Query 010276
Match_columns 514
No_of_seqs 1240 out of 2100
Neff 11.9
Searched_HMMs 29240
Date Mon Mar 25 03:16:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 5.2E-47 1.8E-51 355.4 46.9 381 48-500 4-388 (388)
2 2xpi_A Anaphase-promoting comp 100.0 3.6E-46 1.2E-50 370.4 42.1 467 41-513 82-578 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 6.3E-45 2.2E-49 341.2 45.1 383 5-467 3-388 (388)
4 2xpi_A Anaphase-promoting comp 100.0 3.2E-44 1.1E-48 356.4 42.9 475 4-496 87-595 (597)
5 2gw1_A Mitochondrial precursor 100.0 9.6E-41 3.3E-45 325.3 43.6 418 40-491 3-489 (514)
6 3fp2_A TPR repeat-containing p 100.0 1.5E-40 5E-45 325.8 33.6 414 40-486 22-496 (537)
7 2gw1_A Mitochondrial precursor 100.0 2E-39 7E-44 315.9 36.9 366 106-513 4-477 (514)
8 2y4t_A DNAJ homolog subfamily 100.0 6.1E-38 2.1E-42 300.1 40.3 360 105-505 23-445 (450)
9 2y4t_A DNAJ homolog subfamily 100.0 3.6E-37 1.2E-41 294.7 41.9 343 127-510 11-405 (450)
10 3ieg_A DNAJ homolog subfamily 100.0 2.6E-36 9E-41 279.7 43.6 320 140-500 2-355 (359)
11 3fp2_A TPR repeat-containing p 100.0 1.3E-36 4.6E-41 297.7 42.2 408 3-456 27-500 (537)
12 4g1t_A Interferon-induced prot 100.0 7.7E-37 2.6E-41 294.2 34.8 384 39-492 47-471 (472)
13 3ieg_A DNAJ homolog subfamily 100.0 1.2E-35 4.1E-40 275.2 40.7 320 107-467 2-355 (359)
14 4g1t_A Interferon-induced prot 100.0 2.7E-34 9.4E-39 276.4 36.1 345 138-514 48-459 (472)
15 3hym_B Cell division cycle pro 100.0 7.3E-34 2.5E-38 260.0 32.5 284 138-462 19-314 (330)
16 3hym_B Cell division cycle pro 100.0 2.4E-33 8.2E-38 256.6 33.8 284 218-502 25-322 (330)
17 1fch_A Peroxisomal targeting s 100.0 4.7E-34 1.6E-38 265.5 26.5 287 225-513 35-358 (368)
18 1fch_A Peroxisomal targeting s 100.0 4.8E-33 1.6E-37 258.7 27.2 295 150-481 34-359 (368)
19 2xm6_A Protein corresponding t 100.0 3.6E-30 1.2E-34 248.1 47.7 381 41-511 37-468 (490)
20 4eqf_A PEX5-related protein; a 100.0 2.9E-32 9.9E-37 253.0 27.1 263 250-513 66-355 (365)
21 2xm6_A Protein corresponding t 100.0 1.1E-28 3.9E-33 237.6 47.9 350 106-513 37-431 (490)
22 2ooe_A Cleavage stimulation fa 100.0 4.9E-29 1.7E-33 242.6 43.4 407 41-513 11-491 (530)
23 4eqf_A PEX5-related protein; a 100.0 6.1E-31 2.1E-35 244.1 27.3 263 217-480 67-355 (365)
24 3cv0_A Peroxisome targeting si 100.0 1.8E-30 6.2E-35 237.1 28.3 265 216-481 22-315 (327)
25 3cv0_A Peroxisome targeting si 100.0 4.1E-30 1.4E-34 234.7 29.9 264 249-513 21-314 (327)
26 2h6f_A Protein farnesyltransfe 100.0 1.2E-30 4.2E-35 239.1 26.3 253 243-497 91-365 (382)
27 2h6f_A Protein farnesyltransfe 100.0 1.7E-29 5.9E-34 231.5 29.2 253 211-465 93-366 (382)
28 2ooe_A Cleavage stimulation fa 100.0 6.4E-28 2.2E-32 234.8 41.9 365 106-513 11-453 (530)
29 3mkr_A Coatomer subunit epsilo 100.0 4.9E-28 1.7E-32 215.1 29.6 275 222-508 6-288 (291)
30 3e4b_A ALGK; tetratricopeptide 100.0 1.3E-27 4.4E-32 226.4 30.2 371 47-510 7-417 (452)
31 3u4t_A TPR repeat-containing p 100.0 4.4E-28 1.5E-32 215.0 24.9 248 140-428 2-266 (272)
32 3u4t_A TPR repeat-containing p 100.0 7.6E-28 2.6E-32 213.5 25.0 246 250-497 4-267 (272)
33 2pl2_A Hypothetical conserved 100.0 6.5E-28 2.2E-32 205.1 22.6 196 314-511 2-211 (217)
34 3mkr_A Coatomer subunit epsilo 100.0 9.3E-27 3.2E-31 206.8 30.9 256 51-383 7-268 (291)
35 2pl2_A Hypothetical conserved 100.0 8.9E-28 3E-32 204.3 22.2 210 246-479 2-212 (217)
36 3uq3_A Heat shock protein STI1 100.0 3E-27 1E-31 207.8 25.9 224 216-482 6-237 (258)
37 3uq3_A Heat shock protein STI1 100.0 5.9E-27 2E-31 206.0 27.5 226 173-413 3-237 (258)
38 3sf4_A G-protein-signaling mod 100.0 1E-27 3.6E-32 225.8 21.4 288 214-502 8-364 (406)
39 3sf4_A G-protein-signaling mod 100.0 8.9E-27 3E-31 219.4 23.1 298 138-472 6-367 (406)
40 4a1s_A PINS, partner of inscut 99.9 3.5E-26 1.2E-30 215.7 23.7 273 212-485 45-376 (411)
41 3e4b_A ALGK; tetratricopeptide 99.9 2.1E-26 7.2E-31 218.1 22.0 343 112-513 7-386 (452)
42 4a1s_A PINS, partner of inscut 99.9 1.3E-26 4.5E-31 218.6 19.9 267 247-514 46-372 (411)
43 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.2E-26 3.9E-31 206.2 16.7 246 225-475 15-269 (275)
44 3ro2_A PINS homolog, G-protein 99.9 7.4E-26 2.5E-30 207.3 22.6 265 216-481 6-332 (338)
45 3ro2_A PINS homolog, G-protein 99.9 9.7E-26 3.3E-30 206.5 22.3 265 249-514 5-332 (338)
46 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.7E-25 5.8E-30 198.6 21.6 247 258-508 14-269 (275)
47 2q7f_A YRRB protein; TPR, prot 99.9 4.7E-25 1.6E-29 191.9 22.3 213 249-462 23-237 (243)
48 2q7f_A YRRB protein; TPR, prot 99.9 1.1E-24 3.7E-29 189.6 23.1 216 283-499 23-241 (243)
49 1ouv_A Conserved hypothetical 99.9 4.8E-23 1.6E-27 182.5 31.0 229 245-485 2-255 (273)
50 2ho1_A Type 4 fimbrial biogene 99.9 9.6E-24 3.3E-28 184.7 26.0 204 249-453 37-244 (252)
51 2ond_A Cleavage stimulation fa 99.9 1.5E-23 5.1E-28 188.8 27.0 256 158-459 33-304 (308)
52 3ulq_A Response regulator aspa 99.9 3.6E-24 1.2E-28 199.6 23.4 299 212-513 9-367 (383)
53 2ho1_A Type 4 fimbrial biogene 99.9 2.1E-23 7.3E-28 182.5 27.0 208 278-486 31-243 (252)
54 3vtx_A MAMA; tetratricopeptide 99.9 7.3E-24 2.5E-28 175.6 22.6 170 247-416 3-174 (184)
55 3vtx_A MAMA; tetratricopeptide 99.9 7.3E-24 2.5E-28 175.6 22.5 170 315-485 3-174 (184)
56 1xi4_A Clathrin heavy chain; a 99.9 8.7E-22 3E-26 197.8 40.9 416 45-510 987-1441(1630)
57 2vq2_A PILW, putative fimbrial 99.9 5.7E-23 1.9E-27 176.4 28.1 206 280-486 5-216 (225)
58 1xi4_A Clathrin heavy chain; a 99.9 4E-22 1.4E-26 200.2 37.8 403 52-507 959-1377(1630)
59 4abn_A Tetratricopeptide repea 99.9 5.2E-24 1.8E-28 203.0 23.4 212 264-477 83-317 (474)
60 4abn_A Tetratricopeptide repea 99.9 3.8E-24 1.3E-28 203.9 22.0 214 297-510 82-317 (474)
61 2vq2_A PILW, putative fimbrial 99.9 1.6E-22 5.6E-27 173.5 29.1 210 215-456 8-220 (225)
62 2ond_A Cleavage stimulation fa 99.9 6.7E-23 2.3E-27 184.5 27.6 220 232-452 33-275 (308)
63 1ouv_A Conserved hypothetical 99.9 4.5E-22 1.6E-26 176.1 31.5 228 215-454 6-258 (273)
64 3ulq_A Response regulator aspa 99.9 6.5E-23 2.2E-27 191.1 25.4 231 251-483 105-370 (383)
65 4i17_A Hypothetical protein; T 99.9 4.1E-22 1.4E-26 171.3 25.9 206 249-462 7-224 (228)
66 4gyw_A UDP-N-acetylglucosamine 99.9 3.9E-23 1.3E-27 204.1 20.2 172 312-484 4-177 (723)
67 4gyw_A UDP-N-acetylglucosamine 99.9 7.8E-23 2.7E-27 201.9 20.4 173 278-451 4-178 (723)
68 4i17_A Hypothetical protein; T 99.9 3.6E-22 1.2E-26 171.6 22.1 209 280-496 4-225 (228)
69 3nf1_A KLC 1, kinesin light ch 99.9 5.2E-23 1.8E-27 186.1 15.3 247 211-484 23-310 (311)
70 3dra_A Protein farnesyltransfe 99.9 1.3E-20 4.4E-25 165.5 27.4 230 232-492 50-300 (306)
71 3q15_A PSP28, response regulat 99.9 4.5E-21 1.5E-25 178.2 25.6 294 218-513 15-364 (378)
72 3qky_A Outer membrane assembly 99.9 2.5E-21 8.4E-26 170.1 21.0 211 277-505 9-252 (261)
73 3dra_A Protein farnesyltransfe 99.9 3.6E-20 1.2E-24 162.7 28.0 216 266-513 50-286 (306)
74 3nf1_A KLC 1, kinesin light ch 99.9 3.6E-22 1.2E-26 180.6 15.1 254 169-450 21-310 (311)
75 1b89_A Protein (clathrin heavy 99.9 7.4E-21 2.5E-25 171.8 22.0 370 15-473 17-409 (449)
76 3q15_A PSP28, response regulat 99.9 4.2E-20 1.4E-24 171.6 26.8 230 251-482 103-366 (378)
77 1b89_A Protein (clathrin heavy 99.9 1.9E-21 6.5E-26 175.7 16.5 352 109-504 33-407 (449)
78 1hz4_A MALT regulatory protein 99.9 6.7E-20 2.3E-24 170.2 27.5 268 216-484 15-325 (373)
79 2pzi_A Probable serine/threoni 99.9 9E-21 3.1E-25 188.7 22.4 185 244-433 389-583 (681)
80 4e6h_A MRNA 3'-END-processing 99.9 1.1E-17 3.9E-22 163.1 43.0 210 303-512 329-568 (679)
81 2pzi_A Probable serine/threoni 99.9 3E-21 1E-25 192.1 17.4 185 312-500 389-583 (681)
82 3qky_A Outer membrane assembly 99.9 2.6E-20 9E-25 163.5 21.3 190 211-416 11-228 (261)
83 3urz_A Uncharacterized protein 99.9 1.1E-20 3.7E-25 159.3 17.4 173 218-391 7-198 (208)
84 3urz_A Uncharacterized protein 99.9 1.3E-20 4.3E-25 158.9 16.9 177 316-494 3-199 (208)
85 4ga2_A E3 SUMO-protein ligase 99.9 3.7E-21 1.3E-25 152.6 12.6 144 356-500 3-149 (150)
86 4ga2_A E3 SUMO-protein ligase 99.9 6.9E-21 2.4E-25 151.0 13.2 144 323-467 3-149 (150)
87 1qqe_A Vesicular transport pro 99.9 3.4E-20 1.1E-24 165.3 19.2 225 233-477 3-265 (292)
88 1qqe_A Vesicular transport pro 99.9 2.4E-20 8.3E-25 166.2 18.3 216 231-461 33-283 (292)
89 1hz4_A MALT regulatory protein 99.9 4E-19 1.4E-23 165.0 27.1 264 249-513 14-321 (373)
90 4e6h_A MRNA 3'-END-processing 99.8 6.2E-17 2.1E-21 158.0 40.6 391 59-513 48-532 (679)
91 3dss_A Geranylgeranyl transfer 99.8 5.3E-18 1.8E-22 149.5 29.2 227 267-493 48-317 (331)
92 3as5_A MAMA; tetratricopeptide 99.8 2.7E-19 9.4E-24 148.2 20.0 166 319-485 10-177 (186)
93 3as5_A MAMA; tetratricopeptide 99.8 4.6E-19 1.6E-23 146.8 20.1 164 219-382 12-176 (186)
94 3dss_A Geranylgeranyl transfer 99.8 1.8E-17 6E-22 146.2 30.3 238 225-462 39-319 (331)
95 2r5s_A Uncharacterized protein 99.8 8.6E-20 2.9E-24 149.5 14.6 167 346-513 2-172 (176)
96 3edt_B KLC 2, kinesin light ch 99.8 1.3E-19 4.3E-24 161.3 16.3 197 317-514 43-281 (283)
97 3edt_B KLC 2, kinesin light ch 99.8 1.2E-19 4.1E-24 161.4 15.1 230 225-481 11-281 (283)
98 2yhc_A BAMD, UPF0169 lipoprote 99.8 2.2E-18 7.6E-23 147.2 21.4 199 250-485 5-217 (225)
99 2yhc_A BAMD, UPF0169 lipoprote 99.8 2.4E-18 8.2E-23 147.0 21.0 198 283-513 4-212 (225)
100 4gco_A Protein STI-1; structur 99.8 6.3E-19 2.2E-23 134.7 14.4 117 344-461 7-124 (126)
101 3q7a_A Farnesyltransferase alp 99.8 1.7E-17 5.9E-22 146.7 24.6 230 229-485 68-336 (349)
102 2r5s_A Uncharacterized protein 99.8 5E-19 1.7E-23 144.9 13.7 163 248-411 5-172 (176)
103 3qou_A Protein YBBN; thioredox 99.8 2.6E-18 8.7E-23 152.4 18.5 166 347-513 114-283 (287)
104 3q7a_A Farnesyltransferase alp 99.8 6.9E-17 2.4E-21 142.9 27.2 186 175-366 54-258 (349)
105 4gco_A Protein STI-1; structur 99.8 2.2E-18 7.4E-23 131.7 14.6 120 375-495 4-125 (126)
106 3qou_A Protein YBBN; thioredox 99.8 1.2E-17 4.2E-22 148.0 20.1 167 313-480 113-283 (287)
107 3gyz_A Chaperone protein IPGC; 99.8 1.9E-18 6.5E-23 135.7 11.9 115 371-486 23-138 (151)
108 2ifu_A Gamma-SNAP; membrane fu 99.8 1E-17 3.5E-22 150.4 18.0 198 227-451 3-227 (307)
109 2ifu_A Gamma-SNAP; membrane fu 99.8 2.6E-17 8.8E-22 147.8 18.3 218 262-506 4-253 (307)
110 4f3v_A ESX-1 secretion system 99.8 8.7E-18 3E-22 143.6 13.8 194 262-458 19-247 (282)
111 2vsy_A XCC0866; transferase, g 99.8 2.4E-17 8.2E-22 161.6 18.7 155 330-485 3-161 (568)
112 1p5q_A FKBP52, FK506-binding p 99.7 8.3E-19 2.8E-23 159.1 6.8 182 296-480 78-293 (336)
113 4f3v_A ESX-1 secretion system 99.7 2E-17 6.7E-22 141.5 14.1 207 217-426 9-250 (282)
114 3gyz_A Chaperone protein IPGC; 99.7 1.9E-17 6.5E-22 130.1 12.6 114 338-452 24-138 (151)
115 2vsy_A XCC0866; transferase, g 99.7 9.3E-17 3.2E-21 157.5 20.3 163 228-390 2-169 (568)
116 3rjv_A Putative SEL1 repeat pr 99.7 6.1E-16 2.1E-20 130.4 22.3 174 268-448 5-198 (212)
117 3rjv_A Putative SEL1 repeat pr 99.7 1.7E-16 5.8E-21 133.8 18.6 173 301-482 4-198 (212)
118 1p5q_A FKBP52, FK506-binding p 99.7 1.6E-18 5.4E-23 157.2 5.8 182 262-446 78-293 (336)
119 2vgx_A Chaperone SYCD; alterna 99.7 3.6E-17 1.2E-21 129.0 10.8 113 372-485 9-122 (148)
120 3mv2_B Coatomer subunit epsilo 99.7 2.7E-15 9.4E-20 130.0 23.3 248 221-490 19-291 (310)
121 2vgx_A Chaperone SYCD; alterna 99.7 7.5E-17 2.6E-21 127.1 12.3 121 335-456 6-127 (148)
122 2c2l_A CHIP, carboxy terminus 99.7 1.7E-16 5.7E-21 140.2 15.5 196 246-446 1-198 (281)
123 2c2l_A CHIP, carboxy terminus 99.7 1.1E-16 3.7E-21 141.4 13.6 196 280-481 1-199 (281)
124 2fo7_A Synthetic consensus TPR 99.7 1.4E-15 4.9E-20 118.3 18.2 133 351-484 2-135 (136)
125 2xcb_A PCRH, regulatory protei 99.7 3.5E-16 1.2E-20 122.8 13.6 115 371-486 5-120 (142)
126 1hh8_A P67PHOX, NCF-2, neutrop 99.7 2.5E-15 8.5E-20 127.3 18.8 132 351-485 7-154 (213)
127 2xcb_A PCRH, regulatory protei 99.7 2E-16 6.8E-21 124.2 10.9 125 337-462 5-130 (142)
128 2uy1_A Cleavage stimulation fa 99.7 6.7E-13 2.3E-17 126.1 37.1 366 55-512 6-411 (493)
129 3mv2_B Coatomer subunit epsilo 99.7 1.5E-14 5.2E-19 125.3 23.3 245 116-419 21-289 (310)
130 2qfc_A PLCR protein; TPR, HTH, 99.7 4.1E-15 1.4E-19 132.5 20.0 166 347-513 72-265 (293)
131 2fo7_A Synthetic consensus TPR 99.7 7.6E-15 2.6E-19 114.1 18.5 130 252-381 4-134 (136)
132 1dce_A Protein (RAB geranylger 99.7 1.9E-16 6.4E-21 152.8 10.4 166 334-500 47-241 (567)
133 2fbn_A 70 kDa peptidylprolyl i 99.7 3.8E-16 1.3E-20 130.5 10.7 142 330-472 18-176 (198)
134 1dce_A Protein (RAB geranylger 99.7 7E-16 2.4E-20 148.8 13.2 184 266-450 46-270 (567)
135 3upv_A Heat shock protein STI1 99.6 4E-15 1.4E-19 114.1 14.7 112 384-496 5-123 (126)
136 1a17_A Serine/threonine protei 99.6 1.1E-14 3.9E-19 117.7 17.9 125 386-511 16-143 (166)
137 3upv_A Heat shock protein STI1 99.6 7.9E-15 2.7E-19 112.4 15.9 117 347-464 1-124 (126)
138 2e2e_A Formate-dependent nitri 99.6 3.4E-15 1.2E-19 122.2 14.5 126 360-486 20-149 (177)
139 4gcn_A Protein STI-1; structur 99.6 4.4E-15 1.5E-19 113.6 13.4 108 384-492 9-123 (127)
140 2fbn_A 70 kDa peptidylprolyl i 99.6 1E-15 3.5E-20 127.8 10.2 154 351-505 5-176 (198)
141 1a17_A Serine/threonine protei 99.6 2E-14 6.8E-19 116.3 17.2 132 350-482 13-147 (166)
142 3ffl_A Anaphase-promoting comp 99.6 9.1E-15 3.1E-19 111.0 13.9 146 1-152 20-166 (167)
143 2e2e_A Formate-dependent nitri 99.6 6.4E-15 2.2E-19 120.6 14.2 126 330-456 24-153 (177)
144 2vyi_A SGTA protein; chaperone 99.6 1.5E-14 5.1E-19 111.7 15.3 121 347-468 9-130 (131)
145 2lni_A Stress-induced-phosphop 99.6 1.5E-14 5E-19 112.2 14.6 115 384-499 17-132 (133)
146 2lni_A Stress-induced-phosphop 99.6 3E-14 1E-18 110.4 15.7 121 346-467 12-133 (133)
147 1hh8_A P67PHOX, NCF-2, neutrop 99.6 7.7E-14 2.6E-18 118.0 19.2 132 215-349 6-154 (213)
148 2qfc_A PLCR protein; TPR, HTH, 99.6 9.5E-14 3.3E-18 123.7 20.7 165 249-447 75-266 (293)
149 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 1.8E-15 6.2E-20 143.2 9.7 149 330-479 248-413 (457)
150 3sz7_A HSC70 cochaperone (SGT) 99.6 1.9E-14 6.6E-19 116.0 14.3 110 349-459 10-120 (164)
151 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 3.2E-15 1.1E-19 141.5 10.8 145 362-507 246-407 (457)
152 2vyi_A SGTA protein; chaperone 99.6 3.5E-14 1.2E-18 109.6 14.5 117 384-501 13-130 (131)
153 3u3w_A Transcriptional activat 99.6 2.6E-14 8.8E-19 127.4 15.6 157 356-513 81-265 (293)
154 3sz7_A HSC70 cochaperone (SGT) 99.6 5.8E-14 2E-18 113.2 16.2 117 211-327 7-123 (164)
155 2uy1_A Cleavage stimulation fa 99.6 2.9E-11 9.8E-16 114.9 36.6 364 45-480 16-412 (493)
156 1hxi_A PEX5, peroxisome target 99.6 2.3E-14 7.9E-19 108.4 12.4 100 385-485 19-118 (121)
157 4gcn_A Protein STI-1; structur 99.6 3.3E-14 1.1E-18 108.6 13.3 109 349-459 7-123 (127)
158 2hr2_A Hypothetical protein; a 99.6 2.3E-14 7.8E-19 110.5 11.7 66 419-485 59-135 (159)
159 2hr2_A Hypothetical protein; a 99.6 8.1E-15 2.8E-19 113.0 9.2 111 350-461 11-145 (159)
160 1na0_A Designed protein CTPR3; 99.6 1.8E-13 6E-18 104.6 16.6 113 385-498 11-124 (125)
161 3u3w_A Transcriptional activat 99.6 2.6E-13 9E-18 120.8 19.6 156 290-446 82-265 (293)
162 3q49_B STIP1 homology and U bo 99.6 1E-13 3.5E-18 108.0 15.0 116 384-500 10-131 (137)
163 1na0_A Designed protein CTPR3; 99.6 2.9E-13 9.9E-18 103.4 17.0 120 346-466 4-125 (125)
164 3gw4_A Uncharacterized protein 99.6 6.4E-14 2.2E-18 117.5 14.4 168 329-497 5-192 (203)
165 3q49_B STIP1 homology and U bo 99.6 6.5E-14 2.2E-18 109.1 13.2 120 345-465 4-129 (137)
166 1hxi_A PEX5, peroxisome target 99.5 7.8E-14 2.7E-18 105.5 12.9 101 218-318 20-120 (121)
167 3rkv_A Putative peptidylprolyl 99.5 7.3E-14 2.5E-18 112.3 13.2 113 350-463 11-143 (162)
168 3rkv_A Putative peptidylprolyl 99.5 1.3E-13 4.5E-18 110.8 13.6 118 384-502 12-149 (162)
169 1elw_A TPR1-domain of HOP; HOP 99.5 5.3E-13 1.8E-17 100.7 16.1 109 385-494 6-115 (118)
170 1wao_1 Serine/threonine protei 99.5 1.1E-14 3.8E-19 138.3 8.1 135 349-484 5-153 (477)
171 1elw_A TPR1-domain of HOP; HOP 99.5 1.1E-12 3.9E-17 98.9 17.2 111 217-327 6-116 (118)
172 3gw4_A Uncharacterized protein 99.5 1.8E-13 6E-18 114.8 13.7 152 295-447 4-176 (203)
173 2if4_A ATFKBP42; FKBP-like, al 99.5 2.5E-14 8.5E-19 129.7 9.1 135 350-485 179-332 (338)
174 2xev_A YBGF; tetratricopeptide 99.5 8.9E-13 3E-17 101.4 15.8 98 387-485 6-109 (129)
175 2dba_A Smooth muscle cell asso 99.5 6.8E-13 2.3E-17 104.8 15.2 115 347-462 25-143 (148)
176 2xev_A YBGF; tetratricopeptide 99.5 1.4E-12 4.6E-17 100.3 16.2 117 350-467 2-125 (129)
177 1elr_A TPR2A-domain of HOP; HO 99.5 4.1E-13 1.4E-17 103.5 13.2 116 384-500 5-127 (131)
178 2kck_A TPR repeat; tetratricop 99.5 4.1E-13 1.4E-17 100.3 11.8 101 384-485 7-110 (112)
179 2dba_A Smooth muscle cell asso 99.5 1.3E-12 4.6E-17 103.1 14.9 116 381-497 25-145 (148)
180 1wao_1 Serine/threonine protei 99.5 5.2E-14 1.8E-18 133.7 7.5 124 385-509 8-134 (477)
181 1elr_A TPR2A-domain of HOP; HO 99.5 9.1E-13 3.1E-17 101.5 12.4 116 349-466 3-126 (131)
182 2kck_A TPR repeat; tetratricop 99.4 2.2E-12 7.5E-17 96.3 13.7 106 346-452 2-111 (112)
183 1ihg_A Cyclophilin 40; ppiase 99.4 1.6E-12 5.5E-17 118.9 15.3 139 350-506 223-362 (370)
184 4b4t_Q 26S proteasome regulato 99.4 3E-12 1E-16 121.2 17.6 213 283-512 4-243 (434)
185 3k9i_A BH0479 protein; putativ 99.4 4.2E-13 1.4E-17 101.1 9.2 92 363-455 3-98 (117)
186 1ihg_A Cyclophilin 40; ppiase 99.4 1.3E-12 4.5E-17 119.5 14.2 139 317-474 223-363 (370)
187 1zu2_A Mitochondrial import re 99.4 6.1E-13 2.1E-17 102.3 9.7 89 397-486 16-125 (158)
188 2if4_A ATFKBP42; FKBP-like, al 99.4 4.1E-13 1.4E-17 121.7 9.9 137 214-350 178-333 (338)
189 4b4t_Q 26S proteasome regulato 99.4 1.2E-11 4E-16 117.1 19.0 211 219-447 8-245 (434)
190 3k9i_A BH0479 protein; putativ 99.4 4.2E-13 1.4E-17 101.1 7.2 91 395-486 2-95 (117)
191 3ro3_A PINS homolog, G-protein 99.4 1.9E-12 6.7E-17 104.0 11.5 131 350-481 9-158 (164)
192 1zu2_A Mitochondrial import re 99.4 2E-12 6.8E-17 99.5 10.2 93 227-319 14-127 (158)
193 3ro3_A PINS homolog, G-protein 99.4 4.2E-12 1.4E-16 102.0 12.7 129 384-513 10-157 (164)
194 2kat_A Uncharacterized protein 99.3 6.8E-11 2.3E-15 88.5 12.0 99 401-500 3-104 (115)
195 2l6j_A TPR repeat-containing p 99.2 6.9E-12 2.4E-16 93.4 5.7 93 384-477 5-103 (111)
196 1na3_A Designed protein CTPR2; 99.2 3.5E-10 1.2E-14 80.4 12.5 81 384-465 10-90 (91)
197 2kat_A Uncharacterized protein 99.2 1.4E-10 4.8E-15 86.8 10.5 81 368-449 3-84 (115)
198 1na3_A Designed protein CTPR2; 99.2 3.5E-10 1.2E-14 80.4 11.2 84 415-499 7-91 (91)
199 2l6j_A TPR repeat-containing p 99.2 6.5E-11 2.2E-15 88.0 7.6 92 217-308 6-103 (111)
200 3ma5_A Tetratricopeptide repea 99.1 2.3E-10 7.9E-15 82.9 9.5 88 412-500 2-92 (100)
201 2kc7_A BFR218_protein; tetratr 99.1 3.1E-10 1E-14 82.3 7.6 90 387-485 4-94 (99)
202 1klx_A Cysteine rich protein B 99.1 3.2E-09 1.1E-13 82.0 13.3 111 364-482 9-127 (138)
203 2kc7_A BFR218_protein; tetratr 99.1 5E-10 1.7E-14 81.1 7.9 90 219-316 4-94 (99)
204 1klx_A Cysteine rich protein B 99.0 6.1E-09 2.1E-13 80.4 13.8 120 330-459 9-136 (138)
205 3ly7_A Transcriptional activat 99.0 1.5E-08 5.2E-13 89.5 17.4 80 410-491 270-349 (372)
206 3ma5_A Tetratricopeptide repea 99.0 2.5E-09 8.5E-14 77.4 9.9 68 381-449 4-72 (100)
207 3u64_A Protein TP_0956; tetrat 99.0 3.4E-08 1.2E-12 83.3 17.9 108 344-451 146-273 (301)
208 3n71_A Histone lysine methyltr 99.0 6.3E-09 2.2E-13 97.9 14.0 121 357-478 316-461 (490)
209 3ly7_A Transcriptional activat 99.0 1.2E-07 4.1E-12 83.8 20.2 155 240-417 185-344 (372)
210 3n71_A Histone lysine methyltr 98.9 6.4E-09 2.2E-13 97.9 12.2 118 330-448 323-465 (490)
211 3u64_A Protein TP_0956; tetrat 98.9 2.3E-08 7.7E-13 84.4 14.1 88 398-485 178-273 (301)
212 3bee_A Putative YFRE protein; 98.8 4.8E-08 1.6E-12 68.7 11.3 74 245-318 2-78 (93)
213 3bee_A Putative YFRE protein; 98.8 4.1E-08 1.4E-12 69.1 10.1 72 413-485 2-76 (93)
214 4g26_A Pentatricopeptide repea 98.8 1.4E-06 4.8E-11 82.8 21.8 171 325-497 34-222 (501)
215 1pc2_A Mitochondria fission pr 98.7 2E-07 6.8E-12 70.8 10.9 97 229-325 12-113 (152)
216 1pc2_A Mitochondria fission pr 98.6 3.9E-07 1.3E-11 69.2 11.5 84 401-485 16-104 (152)
217 4g26_A Pentatricopeptide repea 98.6 9.4E-06 3.2E-10 77.1 23.4 174 285-460 28-218 (501)
218 2v5f_A Prolyl 4-hydroxylase su 98.5 1.7E-06 5.8E-11 62.6 11.4 75 216-290 6-87 (104)
219 2v5f_A Prolyl 4-hydroxylase su 98.5 2.1E-06 7.2E-11 62.1 11.0 77 248-324 4-87 (104)
220 3qww_A SET and MYND domain-con 98.4 1.5E-06 5.2E-11 80.4 12.2 84 362-446 310-410 (433)
221 3qww_A SET and MYND domain-con 98.4 9.7E-07 3.3E-11 81.7 9.0 88 394-482 309-412 (433)
222 3qwp_A SET and MYND domain-con 98.4 2.9E-06 9.8E-11 78.7 12.0 88 393-481 297-400 (429)
223 3qwp_A SET and MYND domain-con 98.4 4.2E-06 1.4E-10 77.6 13.0 102 360-462 297-423 (429)
224 4h7y_A Dual specificity protei 98.3 2.8E-05 9.6E-10 57.8 13.8 108 279-386 9-130 (161)
225 4h7y_A Dual specificity protei 98.2 6.5E-05 2.2E-09 55.9 13.9 119 345-492 8-134 (161)
226 1nzn_A CGI-135 protein, fissio 98.2 2.4E-05 8.1E-10 57.1 10.8 97 229-325 15-116 (126)
227 1nzn_A CGI-135 protein, fissio 98.1 4E-05 1.4E-09 55.9 11.3 92 334-425 19-116 (126)
228 3ffl_A Anaphase-promoting comp 98.1 3.9E-05 1.4E-09 58.6 10.2 131 352-495 22-165 (167)
229 3kae_A CDC27, possible protein 98.0 0.002 6.9E-08 48.7 18.2 130 3-179 4-152 (242)
230 1y8m_A FIS1; mitochondria, unk 97.5 0.0058 2E-07 45.3 13.5 80 246-325 36-119 (144)
231 1y8m_A FIS1; mitochondria, unk 97.4 0.0063 2.2E-07 45.1 13.2 71 350-420 39-114 (144)
232 3o48_A Mitochondria fission 1 97.4 0.0043 1.5E-07 45.4 12.1 69 384-453 41-113 (134)
233 1qsa_A Protein (soluble lytic 97.4 0.1 3.6E-06 50.4 32.0 65 110-178 8-72 (618)
234 3o48_A Mitochondria fission 1 97.4 0.0034 1.2E-07 45.9 11.0 78 248-325 39-120 (134)
235 1qsa_A Protein (soluble lytic 97.3 0.13 4.3E-06 49.9 37.7 164 332-509 268-437 (618)
236 3txn_A 26S proteasome regulato 97.2 0.048 1.6E-06 49.3 19.3 92 355-447 104-210 (394)
237 4gns_B Protein CSD3, chitin bi 97.1 0.0057 2E-07 60.1 13.3 59 419-478 339-397 (754)
238 1zbp_A Hypothetical protein VP 97.1 0.012 4.1E-07 49.2 12.8 128 116-248 5-133 (273)
239 3mkq_A Coatomer beta'-subunit; 97.0 0.12 4E-06 52.8 22.5 164 287-502 633-800 (814)
240 4gns_B Protein CSD3, chitin bi 97.0 0.0087 3E-07 58.9 12.9 58 352-409 339-397 (754)
241 3txn_A 26S proteasome regulato 96.8 0.048 1.7E-06 49.2 15.4 90 388-478 104-207 (394)
242 3mkq_A Coatomer beta'-subunit; 96.4 0.16 5.5E-06 51.8 18.8 46 118-167 662-707 (814)
243 4b4t_P 26S proteasome regulato 96.4 0.57 2E-05 43.5 21.0 201 4-244 20-247 (445)
244 3lvg_A Clathrin heavy chain 1; 96.2 1.2E-05 4.3E-10 72.5 -11.2 139 224-371 179-325 (624)
245 1zbp_A Hypothetical protein VP 96.0 0.1 3.6E-06 43.6 11.7 121 222-349 4-133 (273)
246 4ady_A RPN2, 26S proteasome re 95.9 1.7 5.9E-05 44.0 29.6 264 226-497 385-677 (963)
247 3mkq_B Coatomer subunit alpha; 95.9 0.46 1.6E-05 37.1 14.2 102 359-478 14-115 (177)
248 3spa_A Mtrpol, DNA-directed RN 95.8 0.16 5.5E-06 51.5 14.2 96 318-413 128-231 (1134)
249 2ff4_A Probable regulatory pro 95.7 0.19 6.6E-06 45.8 13.4 108 389-511 121-231 (388)
250 4b4t_P 26S proteasome regulato 95.6 1.4 4.8E-05 40.9 21.0 190 121-312 29-247 (445)
251 4fhn_B Nucleoporin NUP120; pro 95.6 2.4 8.2E-05 44.9 23.2 141 255-399 818-987 (1139)
252 3spa_A Mtrpol, DNA-directed RN 95.5 0.17 5.9E-06 51.2 13.1 100 384-485 128-234 (1134)
253 2ff4_A Probable regulatory pro 95.3 0.31 1.1E-05 44.4 13.5 96 214-309 114-231 (388)
254 3kae_A CDC27, possible protein 95.1 0.83 2.8E-05 34.9 18.4 114 106-249 31-148 (242)
255 4b4t_R RPN7, 26S proteasome re 94.9 0.36 1.2E-05 44.7 12.8 98 350-448 131-238 (429)
256 4b4t_S RPN3, 26S proteasome re 94.7 0.036 1.2E-06 51.5 5.2 150 10-174 145-303 (523)
257 1ya0_A SMG-7 transcript varian 94.3 0.32 1.1E-05 45.6 10.9 79 352-430 154-233 (497)
258 4fhn_B Nucleoporin NUP120; pro 94.1 2.6 8.7E-05 44.7 18.3 82 418-500 900-986 (1139)
259 4b4t_S RPN3, 26S proteasome re 94.0 1.9 6.4E-05 40.3 14.9 61 386-449 234-301 (523)
260 1ya0_A SMG-7 transcript varian 93.9 0.49 1.7E-05 44.3 11.1 75 220-294 157-231 (497)
261 4ady_A RPN2, 26S proteasome re 93.8 6.4 0.00022 40.0 36.9 176 330-510 388-585 (963)
262 3lpz_A GET4 (YOR164C homolog); 93.7 3.3 0.00011 36.2 23.8 41 125-165 119-160 (336)
263 3mkq_B Coatomer subunit alpha; 93.4 2.2 7.5E-05 33.3 17.5 101 224-341 14-114 (177)
264 4b4t_R RPN7, 26S proteasome re 93.3 1 3.5E-05 41.7 12.3 95 219-313 135-238 (429)
265 3lvg_A Clathrin heavy chain 1; 93.1 1.2E-05 4E-10 72.7 -19.9 264 211-506 53-325 (624)
266 2wpv_A GET4, UPF0363 protein Y 83.4 22 0.00075 30.9 19.5 41 125-165 117-158 (312)
267 2crb_A Nuclear receptor bindin 81.7 3.6 0.00012 27.5 5.1 35 38-72 10-44 (97)
268 3ax2_A Mitochondrial import re 78.9 3.4 0.00012 26.5 4.3 33 46-78 20-52 (73)
269 1om2_A Protein (mitochondrial 77.5 5.3 0.00018 27.2 5.1 40 38-77 11-54 (95)
270 3t5x_A PCI domain-containing p 76.3 5.1 0.00017 32.3 5.8 40 38-77 9-48 (203)
271 3lpz_A GET4 (YOR164C homolog); 75.6 41 0.0014 29.4 28.2 63 348-410 134-214 (336)
272 3esl_A Checkpoint serine/threo 74.8 17 0.00058 29.0 8.2 80 404-485 58-148 (202)
273 4gq2_M Nucleoporin NUP120; bet 74.7 35 0.0012 35.3 12.9 90 389-483 816-928 (950)
274 4a5x_A MITD1, MIT domain-conta 72.0 6.6 0.00022 26.3 4.5 33 40-72 13-45 (86)
275 3t5v_B Nuclear mRNA export pro 70.5 22 0.00076 32.8 9.1 39 38-76 215-254 (455)
276 2w2u_A Hypothetical P60 katani 69.0 7.5 0.00026 25.8 4.3 31 42-72 18-48 (83)
277 3ax2_A Mitochondrial import re 66.6 21 0.00072 22.9 5.7 27 389-415 23-49 (73)
278 2v6y_A AAA family ATPase, P60 65.5 9.5 0.00033 25.3 4.3 30 43-72 11-40 (83)
279 2w2u_A Hypothetical P60 katani 64.6 8.2 0.00028 25.6 3.8 13 432-444 33-45 (83)
280 2ijq_A Hypothetical protein; s 64.3 45 0.0015 25.5 8.2 61 217-277 34-103 (161)
281 4gq2_M Nucleoporin NUP120; bet 62.7 1.5E+02 0.005 30.7 14.6 53 113-168 815-867 (950)
282 2v6y_A AAA family ATPase, P60 62.2 9.6 0.00033 25.3 3.8 14 432-445 25-38 (83)
283 1wfd_A Hypothetical protein 15 61.4 18 0.00061 24.6 5.1 34 39-72 11-44 (93)
284 2rpa_A Katanin P60 ATPase-cont 60.8 6.9 0.00023 25.5 2.8 28 45-72 14-41 (78)
285 3esl_A Checkpoint serine/threo 60.4 63 0.0022 25.7 10.6 77 371-449 58-146 (202)
286 2vkj_A TM1634; membrane protei 58.1 38 0.0013 22.4 6.2 33 40-72 50-82 (106)
287 3t5v_B Nuclear mRNA export pro 56.6 78 0.0027 29.2 10.0 62 221-282 182-254 (455)
288 2v6x_A Vacuolar protein sortin 56.2 23 0.00079 23.5 4.9 32 41-72 11-42 (85)
289 2crb_A Nuclear receptor bindin 55.6 24 0.00083 23.7 4.6 28 249-276 15-42 (97)
290 4a1g_A Mitotic checkpoint seri 53.5 70 0.0024 24.1 8.4 50 436-485 83-134 (152)
291 1wy6_A Hypothetical protein ST 53.3 67 0.0023 23.8 13.8 119 390-513 14-153 (172)
292 2wpv_A GET4, UPF0363 protein Y 51.6 1.2E+02 0.0041 26.3 24.9 27 348-374 132-158 (312)
293 2cpt_A SKD1 protein, vacuolar 49.4 23 0.00079 25.3 4.2 32 41-72 16-47 (117)
294 3t5x_A PCI domain-containing p 48.9 48 0.0016 26.5 6.6 33 250-282 15-47 (203)
295 4aez_C MAD3, mitotic spindle c 48.8 1.1E+02 0.0037 24.9 9.8 82 402-485 96-183 (223)
296 1wfd_A Hypothetical protein 15 48.5 21 0.00072 24.3 3.8 14 432-445 29-42 (93)
297 2cwy_A Hypothetical protein TT 47.4 52 0.0018 22.4 5.6 57 422-481 6-68 (94)
298 3re2_A Predicted protein; meni 44.9 1.6E+02 0.0055 26.0 9.2 27 452-478 296-322 (472)
299 2cwy_A Hypothetical protein TT 44.8 71 0.0024 21.7 6.8 57 219-277 5-67 (94)
300 2v6x_A Vacuolar protein sortin 44.6 27 0.00091 23.2 3.8 14 432-445 27-40 (85)
301 2rpa_A Katanin P60 ATPase-cont 43.7 45 0.0015 21.7 4.5 28 216-243 13-40 (78)
302 3uzd_A 14-3-3 protein gamma; s 40.6 1.6E+02 0.0053 24.4 18.6 56 285-340 6-64 (248)
303 2npm_A 14-3-3 domain containin 40.0 1.6E+02 0.0056 24.5 18.3 47 435-481 173-227 (260)
304 1om2_A Protein (mitochondrial 39.2 76 0.0026 21.6 5.2 32 217-248 22-53 (95)
305 2cpt_A SKD1 protein, vacuolar 38.9 26 0.0009 25.0 3.2 14 432-445 32-45 (117)
306 3re2_A Predicted protein; meni 38.9 1.1E+02 0.0038 26.9 7.4 46 334-379 275-325 (472)
307 3iqu_A 14-3-3 protein sigma; s 37.3 1.7E+02 0.0059 24.0 17.1 58 284-341 9-69 (236)
308 2br9_A 14-3-3E, 14-3-3 protein 37.1 1.7E+02 0.0059 24.0 17.8 46 435-480 147-201 (234)
309 3bu8_A Telomeric repeat-bindin 37.0 1.6E+02 0.0056 23.6 7.9 41 390-430 121-161 (235)
310 2ijq_A Hypothetical protein; s 36.9 1.4E+02 0.0047 22.8 8.6 60 252-311 35-103 (161)
311 2dl1_A Spartin; SPG20, MIT, st 35.9 33 0.0011 24.3 3.1 14 399-412 19-32 (116)
312 2qx5_A Nucleoporin NIC96; mRNA 35.4 3.3E+02 0.011 26.7 13.4 25 111-135 155-179 (661)
313 3ubw_A 14-3-3E, 14-3-3 protein 35.4 2E+02 0.0067 24.1 18.2 46 435-480 173-227 (261)
314 2ynq_A ESSB; membrane protein, 34.8 1.5E+02 0.0051 22.5 8.5 86 218-309 11-99 (161)
315 3mv2_A Coatomer subunit alpha; 34.7 2.3E+02 0.0078 24.6 13.4 32 213-244 112-143 (325)
316 4aez_C MAD3, mitotic spindle c 34.0 1.9E+02 0.0065 23.5 10.7 53 122-174 131-183 (223)
317 3bu8_A Telomeric repeat-bindin 33.7 1.9E+02 0.0064 23.3 8.7 67 231-297 88-162 (235)
318 3u84_A Menin; MLL, JUND, ledgf 33.5 2.7E+02 0.0093 25.1 9.2 30 451-480 317-346 (550)
319 4b4t_O 26S proteasome regulato 32.0 2.5E+02 0.0087 25.2 9.4 22 457-478 132-153 (393)
320 4a5x_A MITD1, MIT domain-conta 31.5 69 0.0024 21.3 4.1 26 218-243 19-44 (86)
321 2cfu_A SDSA1; SDS-hydrolase, l 30.0 92 0.0032 30.5 6.5 49 250-298 450-498 (658)
322 3lxu_X Tripeptidyl-peptidase 2 29.9 5.6E+02 0.019 27.6 14.4 148 351-499 1108-1331(1354)
323 3mv2_A Coatomer subunit alpha; 29.4 2.8E+02 0.0096 24.0 12.7 116 43-177 114-243 (325)
324 2e2a_A Protein (enzyme IIA); h 28.3 79 0.0027 22.0 4.0 33 40-72 17-49 (105)
325 1wcr_A PTS system, N, N'-diace 27.8 82 0.0028 21.9 4.0 33 40-72 15-47 (103)
326 2cfu_A SDSA1; SDS-hydrolase, l 27.2 1.3E+02 0.0045 29.5 7.0 40 290-329 456-495 (658)
327 3iqu_A 14-3-3 protein sigma; s 27.1 2.6E+02 0.0089 22.9 15.0 25 322-346 13-38 (236)
328 3u84_A Menin; MLL, JUND, ledgf 26.6 2.2E+02 0.0076 25.7 7.3 46 334-379 297-347 (550)
329 3uzd_A 14-3-3 protein gamma; s 25.5 2.9E+02 0.0098 22.9 16.0 28 253-280 8-35 (248)
330 4gq4_A Menin; tumor suppressor 25.5 2.4E+02 0.0082 25.5 7.4 45 334-378 282-331 (489)
331 3k1s_A PTS system, cellobiose- 24.3 1E+02 0.0035 21.6 4.0 33 40-72 19-51 (109)
332 2wvi_A Mitotic checkpoint seri 23.4 2.5E+02 0.0086 21.5 12.0 57 122-178 77-133 (164)
333 2xze_A STAM-binding protein; h 23.3 1.2E+02 0.004 22.7 4.5 37 43-79 40-80 (146)
334 3l8r_A PTCA, putative PTS syst 22.8 1E+02 0.0035 22.1 3.8 34 39-72 33-66 (120)
335 4gq4_A Menin; tumor suppressor 22.4 4.4E+02 0.015 23.9 8.9 29 417-446 303-331 (489)
336 2qx5_A Nucleoporin NIC96; mRNA 22.3 5.6E+02 0.019 25.1 24.2 22 254-275 299-320 (661)
337 2ynq_A ESSB; membrane protein, 22.1 2.6E+02 0.0089 21.2 10.7 49 110-158 10-58 (161)
338 4a1g_A Mitotic checkpoint seri 22.0 2.6E+02 0.0088 21.1 12.2 57 122-178 82-138 (152)
339 1o9d_A 14-3-3-like protein C; 21.9 3.5E+02 0.012 22.6 18.1 54 286-339 11-69 (260)
340 2npm_A 14-3-3 domain containin 21.5 3.6E+02 0.012 22.5 16.1 28 252-279 31-58 (260)
341 3bqo_A Telomeric repeat-bindin 21.3 1.5E+02 0.005 23.5 4.7 27 257-283 125-151 (211)
342 3myv_A SUSD superfamily protei 21.2 1.7E+02 0.0059 26.9 6.3 34 39-72 186-219 (454)
343 3ltm_A Alpha-REP4; protein eng 21.0 3E+02 0.01 21.5 16.6 185 298-498 16-201 (211)
344 2br9_A 14-3-3E, 14-3-3 protein 20.8 3.5E+02 0.012 22.2 16.7 25 254-278 10-34 (234)
345 3bqo_A Telomeric repeat-bindin 20.2 98 0.0034 24.5 3.6 38 222-259 124-161 (211)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=5.2e-47 Score=355.37 Aligned_cols=381 Identities=15% Similarity=0.205 Sum_probs=363.8
Q ss_pred HHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHH
Q 010276 48 ILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAA 127 (514)
Q Consensus 48 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 127 (514)
.+|..+++.|++++|+..|+++++.+| ++..++..++.++...|++++|
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p-------------------------------~~~~~~~~l~~~~~~~~~~~~a 52 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEP-------------------------------DNTGVLLLLSSIHFQCRRLDRS 52 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCT-------------------------------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCC-------------------------------CCHHHHHHHHHHHHHcCCHHHH
Confidence 468899999999999999999999987 4556677888899999999999
Q ss_pred HHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCC
Q 010276 128 IVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAP 206 (514)
Q Consensus 128 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (514)
...++.. ...|.++.++..+|.++...|++++|+..|+++++.+|++..++..+
T Consensus 53 ~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------------------- 107 (388)
T 1w3b_A 53 AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL------------------------- 107 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHH-------------------------
Confidence 9999884 44588999999999999999999999999999999999998888766
Q ss_pred CCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHH
Q 010276 207 FDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYM 286 (514)
Q Consensus 207 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 286 (514)
|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|.+..++
T Consensus 108 ---------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 172 (388)
T 1w3b_A 108 ---------------AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW 172 (388)
T ss_dssp ---------------HHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ---------------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCC
Q 010276 287 DEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR 365 (514)
Q Consensus 287 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (514)
..+|.++...|++++|+..|++++..+|+++.++..+|.++.. |++++|+..+++++..+|+++.++..+|.++...|+
T Consensus 173 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999988 999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 010276 366 PEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESA 444 (514)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a 444 (514)
+++|+..|+++++..|++ .++..+|.++...|++++|+..++++++..|+++.++..+|.++... |++++|+..|+++
T Consensus 253 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a 331 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ-GNIEEAVRLYRKA 331 (388)
T ss_dssp HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 999999999999999997 78999999999999999999999999999999999999999999998 9999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhcc
Q 010276 445 LRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNM 500 (514)
Q Consensus 445 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~ 500 (514)
++..|+++.++..+|.++...|++++|+..|+++++..|+.. ++..+|.++..+|+
T Consensus 332 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 332 LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999999999999999999999875 99999999988874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-46 Score=370.36 Aligned_cols=467 Identities=16% Similarity=0.135 Sum_probs=387.3
Q ss_pred hhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCccccc--ccCChhHHHHHHHHHH
Q 010276 41 LKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNV--SAINENEVKYKIASCH 118 (514)
Q Consensus 41 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~la~~~ 118 (514)
..+..+..++..+.+.|++++|+..|++++...|+. ..+..++.++...|+..+|...+.. ..+.++.++..++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL 160 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 456788999999999999999999999999999955 5567789999999999999988843 3567888999999999
Q ss_pred HhcCCHHHHHHHHhcC-CCC----------------CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHH
Q 010276 119 FALGETKAAIVEMEGI-PSK----------------ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITAL 181 (514)
Q Consensus 119 ~~~g~~~~A~~~~~~~-~~~----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 181 (514)
.+.|++++|+..++++ +.. +.+..+++.+|.+|.+.|++++|+..|+++++.+|++..++..+
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 240 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQL 240 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 9999999999999964 332 34688999999999999999999999999999999999999999
Q ss_pred HHhccCcccHhHHHhccCCcCCCCCCCcCCchh-HHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 010276 182 AELGATPKDIISLFAQTPNRSGRAPFDHLDSSR-WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDA 260 (514)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 260 (514)
+.++...+................ ..++.. ...+...+..+...|++++|+..|+++++. |.++.++..++.++.
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYS---KEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHH---GGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHH
T ss_pred HHhhcccchhHHHHHHhcCCcccc---cchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHH
Confidence 887665543322221111000000 000000 011112245566778889999999888776 677888889999999
Q ss_pred HhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHH
Q 010276 261 IIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYA 339 (514)
Q Consensus 261 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~ 339 (514)
..|++++|+..|+++++.+|.+..++..++.++...|++++|...+++++...|+++.++..++.++.. |++++|+..|
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999999988888888888899999999999999999999888888888888888888877 8899999999
Q ss_pred HHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 010276 340 EKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAK 418 (514)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 418 (514)
+++++..|.+..+|..+|.++...|++++|+..|+++++..|++ .++..++.++...|++++|+..|+++++..|+++.
T Consensus 397 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 476 (597)
T 2xpi_A 397 SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPL 476 (597)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 99998888888888999999999999999999999998888876 78888899999999999999999999998898888
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhh------CCCC-hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-hHHHH
Q 010276 419 ALKLVGDVHASNASGREKAKKFYESALRL------EPGY-LGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVK 490 (514)
Q Consensus 419 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~------~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 490 (514)
++..+|.++... |++++|+..|+++++. +|++ ..++..+|.++...|++++|+..++++++..|++ .++..
T Consensus 477 ~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 555 (597)
T 2xpi_A 477 LLNELGVVAFNK-SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTA 555 (597)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHHh-CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 999999999888 9999999999998887 5554 6788889999999999999999999999888876 48888
Q ss_pred HHHHHHHhccHHHHHHHHHHHhc
Q 010276 491 LAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 491 l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
+|.+|...|++++|.++|+++++
T Consensus 556 l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 556 IALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999988875
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6.3e-45 Score=341.20 Aligned_cols=383 Identities=18% Similarity=0.150 Sum_probs=360.4
Q ss_pred HHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhh
Q 010276 5 KEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSS 84 (514)
Q Consensus 5 ~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 84 (514)
++....++..|+++.|+.....++... +..+..+..+|.+++..|++++|+..++++++.+|
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p---------- 64 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQE--------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP---------- 64 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------
T ss_pred hhHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----------
Confidence 456788899999999999988877642 23356889999999999999999999999999977
Q ss_pred hhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHH
Q 010276 85 RSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVAC 163 (514)
Q Consensus 85 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 163 (514)
.+..+++.+|.++...|++++|+..++++ ...|.++.++..+|.++...|++++|+..
T Consensus 65 ---------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 123 (388)
T 1w3b_A 65 ---------------------LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123 (388)
T ss_dssp ---------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHH
T ss_pred ---------------------CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55677888999999999999999999995 44588999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 010276 164 YKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQ 243 (514)
Q Consensus 164 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 243 (514)
|+++++.+|++..++..+ |.++...|++++|+..|++++.
T Consensus 124 ~~~al~~~p~~~~~~~~l----------------------------------------~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 124 YVSALQYNPDLYCVRSDL----------------------------------------GNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHCTTCTHHHHHH----------------------------------------HHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHH----------------------------------------HHHHHHccCHHHHHHHHHHHHH
Confidence 999999999988887666 8888889999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHH
Q 010276 244 RFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL 323 (514)
Q Consensus 244 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 323 (514)
.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...|+++.++..+
T Consensus 164 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 243 (388)
T 1w3b_A 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHH
Q 010276 324 SVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKE 401 (514)
Q Consensus 324 ~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 401 (514)
|.++.. |++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++..|++ .++..+|.++...|++++
T Consensus 244 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 323 (388)
T 1w3b_A 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHH
Confidence 999888 999999999999999999999999999999999999999999999999999988 889999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q 010276 402 ALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGR 467 (514)
Q Consensus 402 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 467 (514)
|+..++++++..|+++.++..+|.++... |++++|+..|+++++.+|+++.++..+|.++..+|+
T Consensus 324 A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 324 AVRLYRKALEVFPEFAAAHSNLASVLQQQ-GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTSCTTCHHHHHHHHHHHHTT-TCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999998 999999999999999999999999999999988774
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-44 Score=356.39 Aligned_cols=475 Identities=11% Similarity=0.026 Sum_probs=402.4
Q ss_pred hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhh
Q 010276 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (514)
Q Consensus 4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (514)
+...+..+...|+++.|..+...++...+ +...++.+|.++...|++++|+..|++++.. |.++..+..+
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l 156 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLDITG---------NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLA 156 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHhhCC---------CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHH
Confidence 45667788899999999999888775332 2257788999999999999999999998765 6778888999
Q ss_pred hhhhhhccccCCCCcccccccCC-------------------hhHHHHHHHHHHHhcCCHHHHHHHHhcCC-CCCccHHH
Q 010276 84 SRSSLSTSNRSSSPNSFNVSAIN-------------------ENEVKYKIASCHFALGETKAAIVEMEGIP-SKARNLQM 143 (514)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~ 143 (514)
+.++...|+.++|...|....+. +..+++.+|.++...|++++|+..|+++. ..|.++.+
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 99999999999999888633333 47889999999999999999999999963 44888888
Q ss_pred HHHHHHHHHhcCChhhHHHH---HHHHHhcCCCCHH-HHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHH
Q 010276 144 SLLMAKLYRNSRHNRGAVAC---YKECLRHCPFFIE-AITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRY 219 (514)
Q Consensus 144 ~~~l~~~~~~~g~~~~A~~~---~~~~l~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (514)
+..++.++...+....+... +.+....+|.... .+..++..+...++..++.......... +.+.....
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~ 309 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-------EKSSDLLL 309 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-------GGCHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-------CchHHHHH
Confidence 88888776655443332221 2222222221111 1122233444455554444444333221 23344455
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCh
Q 010276 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (514)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (514)
.++..+...|++++|+..|+++++.+|++..++..++.++...|++++|+..+++++...|.+..++..++.++...|++
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 310 CKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccH
Confidence 66999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 010276 300 SKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQE 378 (514)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 378 (514)
++|+..|+++++..|.++.++..++.++.. |++++|+..|++++...|.++.++..+|.++...|++++|+..|+++++
T Consensus 390 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999888 9999999999999999999999999999999999999999999999999
Q ss_pred hcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCC-HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC
Q 010276 379 LRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKA------MPQS-AKALKLVGDVHASNASGREKAKKFYESALRLEPG 450 (514)
Q Consensus 379 ~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~p~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~ 450 (514)
..|++ .+|..+|.++...|++++|+..|+++++. .|++ ..++..+|.++... |++++|+..|+++++.+|+
T Consensus 470 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 470 LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL-KMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSSC
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCC
Confidence 99987 78999999999999999999999999998 5665 78999999999998 9999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHH
Q 010276 451 YLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFA 496 (514)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~ 496 (514)
++.++..++.++...|++++|...++++++..|++. ++..++.+|.
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999999999999999999999985 8888888764
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-41 Score=325.27 Aligned_cols=418 Identities=14% Similarity=0.083 Sum_probs=359.1
Q ss_pred hhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHH
Q 010276 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF 119 (514)
Q Consensus 40 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 119 (514)
...++.++.+|..++..|+|++|+..|++++..+| ++.+++.+|.++.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------------------------------~~~~~~~la~~~~ 50 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE--------------------------------DPVFYSNLSACYV 50 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC--------------------------------CHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc--------------------------------cHHHHHhHHHHHH
Confidence 35678999999999999999999999999999976 2457788999999
Q ss_pred hcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhcc
Q 010276 120 ALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQT 198 (514)
Q Consensus 120 ~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 198 (514)
..|++++|+..++++ ...|.++.+++.+|.++...|++++|+..|++++...|.+......+..............+..
T Consensus 51 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 130 (514)
T 2gw1_A 51 SVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKF 130 (514)
T ss_dssp HHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-
T ss_pred HHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999995 4458999999999999999999999999999999999866544332222111111110000000
Q ss_pred -------------------------------------CCcCCC--CCCCcCCchhHHhHHHHHHHHHH---hcCHHHHHH
Q 010276 199 -------------------------------------PNRSGR--APFDHLDSSRWLHRYVEAQCCIA---SNDYKGGLE 236 (514)
Q Consensus 199 -------------------------------------~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~ 236 (514)
...... .......+......+..|.+++. .|++++|+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 210 (514)
T 2gw1_A 131 GDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADE 210 (514)
T ss_dssp --------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHH
T ss_pred HHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHH
Confidence 000000 00111124445566777888876 899999999
Q ss_pred HHHHHHH-----h--C-------CCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHH
Q 010276 237 LFAELLQ-----R--F-------PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKL 302 (514)
Q Consensus 237 ~~~~~~~-----~--~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 302 (514)
.++++++ . . |.++.++..+|.++...|++++|+..|+++++.+|. ..++..+|.++...|++++|
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A 289 (514)
T 2gw1_A 211 SFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEY 289 (514)
T ss_dssp HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTG
T ss_pred HHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHH
Confidence 9999998 4 3 455789999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcC
Q 010276 303 SKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP 381 (514)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 381 (514)
+..+++++...|.++.++..+|.++.. |++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 369 (514)
T 2gw1_A 290 YNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369 (514)
T ss_dssp GGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999888 9999999999999999999999999999999999999999999999999999
Q ss_pred Ch-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHh---cCCChHHHHHHHHHHHhhCCCC
Q 010276 382 DL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAK------ALKLVGDVHAS---NASGREKAKKFYESALRLEPGY 451 (514)
Q Consensus 382 ~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~---~~~~~~~A~~~~~~a~~~~~~~ 451 (514)
++ .++..+|.++...|++++|+..+++++...|+++. ++..+|.++.. . |++++|+..|++++..+|++
T Consensus 370 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~ 448 (514)
T 2gw1_A 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV-ENFIEATNLLEKASKLDPRS 448 (514)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT-THHHHHHHHHHHHHHHCTTC
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc-CCHHHHHHHHHHHHHhCccc
Confidence 87 88999999999999999999999999999998855 99999999999 8 99999999999999999999
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHH
Q 010276 452 LGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKL 491 (514)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l 491 (514)
+.++..+|.++...|++++|+..++++++..|++. ++..+
T Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 449 EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999999999999999999999999999999974 44433
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.5e-40 Score=325.78 Aligned_cols=414 Identities=15% Similarity=0.102 Sum_probs=306.7
Q ss_pred hhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHH
Q 010276 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF 119 (514)
Q Consensus 40 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 119 (514)
...++.++.+|..++..|+|++|+..|++++..+| +++.+++.+|.++.
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-------------------------------~~~~~~~~la~~~~ 70 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-------------------------------NEPVFYSNISACYI 70 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-------------------------------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-------------------------------CCcHHHHHHHHHHH
Confidence 34678999999999999999999999999999987 44567778888888
Q ss_pred hcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhcc
Q 010276 120 ALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQT 198 (514)
Q Consensus 120 ~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 198 (514)
..|++++|+..++++ ...|.++.+++.+|.++...|++++|+..|+ ++..+|+....+................+...
T Consensus 71 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 149 (537)
T 3fp2_A 71 STGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNEN 149 (537)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999988884 4458888889999999999999999999885 77777766554421100000001111111111
Q ss_pred CCcCCCCC----------------------------CCcCCchhHHhHHHHHHHHHH--------hcCHHHHHHHHHHHH
Q 010276 199 PNRSGRAP----------------------------FDHLDSSRWLHRYVEAQCCIA--------SNDYKGGLELFAELL 242 (514)
Q Consensus 199 ~~~~~~~~----------------------------~~~~~~~~~~~~~~~a~~~~~--------~~~~~~A~~~~~~~~ 242 (514)
........ ....++.........+..+.. .|++++|+..+++++
T Consensus 150 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l 229 (537)
T 3fp2_A 150 LSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL 229 (537)
T ss_dssp CC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 11100000 000111111111112222211 247888888999988
Q ss_pred HhCCCcHH-------HHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCC
Q 010276 243 QRFPNNIH-------ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS 315 (514)
Q Consensus 243 ~~~p~~~~-------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 315 (514)
+.+|+++. ++..+|.++...|++++|+..|+++++.+|. ..++..+|.++...|++++|+..+++++...|+
T Consensus 230 ~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 308 (537)
T 3fp2_A 230 SANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE 308 (537)
T ss_dssp C--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT
T ss_pred HHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC
Confidence 88888755 4677788888888999999999999999888 888888999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHH
Q 010276 316 RPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSY 393 (514)
Q Consensus 316 ~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~ 393 (514)
++.++..+|.++.. |++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|++ .++..+|.++
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEIL 388 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 99999999888877 889999999999999999888889999999999999999999999999988887 7888889999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHH------HHHHHHHHHhcC---------CChHHHHHHHHHHHhhCCCChHHHHHH
Q 010276 394 LQFSKVKEALYAAREAMKAMPQSAKA------LKLVGDVHASNA---------SGREKAKKFYESALRLEPGYLGAALAL 458 (514)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~~~p~~~~~------~~~l~~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~l 458 (514)
...|++++|+..+++++...|++... +..+|.++.... |++++|+..|+++++.+|+++.++..+
T Consensus 389 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 468 (537)
T 3fp2_A 389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGL 468 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999998887765433 455566666531 788899999999999999988899999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276 459 AELHVIEGRNGDAVSLLERYLKDWADDS 486 (514)
Q Consensus 459 a~~~~~~g~~~~A~~~~~~~~~~~~~~~ 486 (514)
|.++...|++++|+..|+++++..|+..
T Consensus 469 ~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 469 AQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 9999999999999999999999888764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-39 Score=315.89 Aligned_cols=366 Identities=16% Similarity=0.149 Sum_probs=333.7
Q ss_pred ChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhc
Q 010276 106 NENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELG 185 (514)
Q Consensus 106 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 185 (514)
...+.++.+|.+++..|++++|+..++++.....++.++..+|.++...|++++|+..|+++++.+|++..++..+
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---- 79 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRR---- 79 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHH----
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHH----
Confidence 3567889999999999999999999999644323789999999999999999999999999999999999988777
Q ss_pred cCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------------------
Q 010276 186 ATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFP------------------- 246 (514)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p------------------- 246 (514)
|.++...|++++|+..|++++...|
T Consensus 80 ------------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (514)
T 2gw1_A 80 ------------------------------------ASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAM 123 (514)
T ss_dssp ------------------------------------HHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHH
T ss_pred ------------------------------------HHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHH
Confidence 5556666666666666666655543
Q ss_pred ------------------------------------------------------------CcHHHHHHHHHHHHH---hC
Q 010276 247 ------------------------------------------------------------NNIHILLEMAKVDAI---IG 263 (514)
Q Consensus 247 ------------------------------------------------------------~~~~~~~~la~~~~~---~~ 263 (514)
+++..+..+|.++.. .|
T Consensus 124 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (514)
T 2gw1_A 124 SKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPE 203 (514)
T ss_dssp HHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTT
T ss_pred HHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhc
Confidence 337778888888886 89
Q ss_pred ChHHHHHHHHHHHh-----h--C-------CCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh
Q 010276 264 KNDEAILNFEKVRS-----I--D-------PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER 329 (514)
Q Consensus 264 ~~~~A~~~~~~~~~-----~--~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 329 (514)
++++|+..|+++++ . + |.++.++..+|.++...|++++|+..+++++...|. +.++..+|.++..
T Consensus 204 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~ 282 (514)
T 2gw1_A 204 SYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMAD 282 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHH
Confidence 99999999999999 5 3 445678999999999999999999999999999999 9999999999888
Q ss_pred -cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHH
Q 010276 330 -KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAR 407 (514)
Q Consensus 330 -~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~ 407 (514)
|++++|+..+++++..+|.++.++..+|.++...|++++|+..|+++++..|++ .++..+|.++...|++++|+..++
T Consensus 283 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 283 RNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp SSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987 889999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChH------HHHHHHHHHHH---cCChhHHHHHHHHH
Q 010276 408 EAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG------AALALAELHVI---EGRNGDAVSLLERY 478 (514)
Q Consensus 408 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~la~~~~~---~g~~~~A~~~~~~~ 478 (514)
+++...|+++.++..+|.++... |++++|+..|+++++..|+++. ++..+|.++.. .|++++|+..++++
T Consensus 363 ~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 363 EAKRKFPEAPEVPNFFAEILTDK-NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp HHHHHSTTCSHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred HHHHHcccCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 99999999999999999999998 9999999999999999988865 99999999999 99999999999999
Q ss_pred HhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 479 LKDWADDS-LHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 479 ~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
++..|++. ++..+|.++...|++++|...|+++++
T Consensus 442 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 442 SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999875 999999999999999999999999875
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=6.1e-38 Score=300.06 Aligned_cols=360 Identities=15% Similarity=0.145 Sum_probs=325.7
Q ss_pred CChhHHHHHHHHHHHhcCCHHHHHHHHhcCC-CCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 010276 105 INENEVKYKIASCHFALGETKAAIVEMEGIP-SKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAE 183 (514)
Q Consensus 105 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 183 (514)
|++..+++.+|.++...|++++|+..++++. ..|.++.+++.+|.++...|++++|+..|+++++.+|++..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-- 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR-- 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH--
Confidence 4678889999999999999999999999954 3588999999999999999999999999999999999988887666
Q ss_pred hccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH---HHHHHH-----
Q 010276 184 LGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI---HILLEM----- 255 (514)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l----- 255 (514)
|.++...|++++|+..|++++..+|+++ .++..+
T Consensus 101 --------------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 142 (450)
T 2y4t_A 101 --------------------------------------GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDE 142 (450)
T ss_dssp --------------------------------------HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Confidence 8888999999999999999999999988 776655
Q ss_pred -------HHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHh
Q 010276 256 -------AKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE 328 (514)
Q Consensus 256 -------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (514)
|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 222 (450)
T 2y4t_A 143 MQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY 222 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 6669999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred h-cChhHHHHHHHHHHHhcccCchhHHHH------------HHHHHhcCChHHHHHHHHHhHhhcCCh-----HHHHHHH
Q 010276 329 R-KDERGALSYAEKSIRIDERHIPGYIMK------------GNLLLSMKRPEAAVIAFRGAQELRPDL-----RSYQGLV 390 (514)
Q Consensus 329 ~-~~~~~A~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~l~ 390 (514)
. |++++|+..+++++...|+++..+..+ |.++...|++++|+..|+++++..|++ ..+..+|
T Consensus 223 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~ 302 (450)
T 2y4t_A 223 QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERIC 302 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 8 999999999999999999998887666 999999999999999999999999985 3688999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHH---------
Q 010276 391 HSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAEL--------- 461 (514)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~--------- 461 (514)
.++...|++++|+..+++++..+|+++.++..+|.++... |++++|+..|+++++++|+++.++..++.+
T Consensus 303 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 381 (450)
T 2y4t_A 303 HCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIE-EMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQK 381 (450)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999998 999999999999999999999999999955
Q ss_pred ---HHHcC-----ChhHHHHHHHH-HHhhCCCc-----------hHHHHHHHHHHHhccHHHHH
Q 010276 462 ---HVIEG-----RNGDAVSLLER-YLKDWADD-----------SLHVKLAQVFAATNMLQEAL 505 (514)
Q Consensus 462 ---~~~~g-----~~~~A~~~~~~-~~~~~~~~-----------~~~~~l~~~~~~~g~~~~A~ 505 (514)
|...| +.+++.+.|++ +++..|+. ..+..++.+|..+|+.+++.
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 33445 56778888987 77777763 15667788888888876654
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=3.6e-37 Score=294.72 Aligned_cols=343 Identities=16% Similarity=0.155 Sum_probs=307.4
Q ss_pred HHHHHhc-CCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCC
Q 010276 127 AIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRA 205 (514)
Q Consensus 127 A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 205 (514)
+...+.. +...|.++..++.+|..+...|++++|+..|+++++.+|.+..++..+
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l------------------------ 66 (450)
T 2y4t_A 11 VDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR------------------------ 66 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------------------
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHH------------------------
Confidence 3344444 455689999999999999999999999999999999999988888666
Q ss_pred CCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH--
Q 010276 206 PFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM-- 283 (514)
Q Consensus 206 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-- 283 (514)
|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.+.
T Consensus 67 ----------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 130 (450)
T 2y4t_A 67 ----------------ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEE 130 (450)
T ss_dssp ----------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHH
T ss_pred ----------------HHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Confidence 88899999999999999999999999999999999999999999999999999999999988
Q ss_pred -HHHHHH------------HHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccC
Q 010276 284 -TYMDEY------------AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERH 349 (514)
Q Consensus 284 -~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~ 349 (514)
.++..+ |.++...|++++|+..+++++...|.++.++..+|.++.. |++++|+..++++++.+|.+
T Consensus 131 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 210 (450)
T 2y4t_A 131 KEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN 210 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 776655 6669999999999999999999999999999999999888 99999999999999999999
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHH------------HHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 010276 350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGL------------VHSYLQFSKVKEALYAAREAMKAMPQS 416 (514)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~p~~ 416 (514)
+.++..+|.++...|++++|+..|++++...|++ ..+..+ |.++...|++++|+..|++++...|++
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~ 290 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI 290 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999999987 445444 999999999999999999999999998
Q ss_pred HH----HHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHH
Q 010276 417 AK----ALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKL 491 (514)
Q Consensus 417 ~~----~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l 491 (514)
+. .+..+|.++... |++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++..|++. ++..+
T Consensus 291 ~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 369 (450)
T 2y4t_A 291 AEYTVRSKERICHCFSKD-EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL 369 (450)
T ss_dssp HHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 54 788999999998 9999999999999999999999999999999999999999999999999999975 88888
Q ss_pred HHH------------HHHhc-----cHHHHHHHHHH
Q 010276 492 AQV------------FAATN-----MLQEALSHYEA 510 (514)
Q Consensus 492 ~~~------------~~~~g-----~~~~A~~~~~~ 510 (514)
+.+ |..+| +.+++.+.|++
T Consensus 370 ~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 370 EKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 854 44444 45566777775
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=2.6e-36 Score=279.69 Aligned_cols=320 Identities=16% Similarity=0.144 Sum_probs=279.0
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHH
Q 010276 140 NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRY 219 (514)
Q Consensus 140 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (514)
+++.++.+|.++...|++++|+..|+++++.+|.++.++..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~-------------------------------------- 43 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR-------------------------------------- 43 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH--------------------------------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHH--------------------------------------
Confidence 467788888888888888888888888888888887777655
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCC---CCHHHHHHH-------
Q 010276 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP---YIMTYMDEY------- 289 (514)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l------- 289 (514)
|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+| .+..++..+
T Consensus 44 --a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 121 (359)
T 3ieg_A 44 --ATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ 121 (359)
T ss_dssp --HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHH
Confidence 77788888888888888888888888888888888888888888888888888888888 777777666
Q ss_pred -----HHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhc
Q 010276 290 -----AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM 363 (514)
Q Consensus 290 -----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (514)
|.++...|++++|+..+++++...|.++.++..+|.++.. |++++|+..+++++...|.++.++..+|.++...
T Consensus 122 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 201 (359)
T 3ieg_A 122 RLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQL 201 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 6888899999999999999999999999999999988887 9999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhHhhcCCh-HHH------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHH
Q 010276 364 KRPEAAVIAFRGAQELRPDL-RSY------------QGLVHSYLQFSKVKEALYAAREAMKAMPQSAK----ALKLVGDV 426 (514)
Q Consensus 364 ~~~~~A~~~~~~~~~~~~~~-~~~------------~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~ 426 (514)
|++++|+..++++++..|+. .++ ..+|.++...|++++|+..+++++...|+++. .+..+|.+
T Consensus 202 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 202 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHC 281 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 99999999999999998887 332 24488899999999999999999999999874 45678999
Q ss_pred HHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhcc
Q 010276 427 HASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNM 500 (514)
Q Consensus 427 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~ 500 (514)
+... |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|++. ++..++.++..+++
T Consensus 282 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 282 FSKD-EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHc-cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 9998 9999999999999999999999999999999999999999999999999999875 88888888776654
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.3e-36 Score=297.67 Aligned_cols=408 Identities=12% Similarity=0.032 Sum_probs=331.4
Q ss_pred chHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhh
Q 010276 3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST 82 (514)
Q Consensus 3 ~~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 82 (514)
.++.....++..|+|+.|+.....++...+ ..+.+++.+|.+++..|++++|+..|+++++.+|+++..+..
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 98 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDP--------NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLR 98 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCC--------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHH
Confidence 356778889999999999999998887532 345789999999999999999999999999999988877777
Q ss_pred hhhhhhhccccCCCCcccccc--cCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCC------------------------
Q 010276 83 SSRSSLSTSNRSSSPNSFNVS--AINENEVKYKIASCHFALGETKAAIVEMEGIPS------------------------ 136 (514)
Q Consensus 83 ~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------------------------ 136 (514)
++.++...|+.++|...+... .|+..... ...+...+...+|+..++.+..
T Consensus 99 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 99 RASANESLGNFTDAMFDLSVLSLNGDFDGAS---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCCChHH---HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 777777777777666655221 11111111 1122222233334433333211
Q ss_pred -------------C-CccHHHHHHHHHHHH--------hcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHH
Q 010276 137 -------------K-ARNLQMSLLMAKLYR--------NSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISL 194 (514)
Q Consensus 137 -------------~-~~~~~~~~~l~~~~~--------~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~ 194 (514)
. +........++.++. ..|++++|+..|+++++.+|++...+..++..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~---------- 245 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALA---------- 245 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHH----------
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHH----------
Confidence 1 111223333333332 33588999999999999999988877655433
Q ss_pred HhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHH
Q 010276 195 FAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEK 274 (514)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 274 (514)
++.+|.++...|++++|+..+++++..+|+ +.++..+|.++...|++++|+..+++
T Consensus 246 -----------------------~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 246 -----------------------LCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQK 301 (537)
T ss_dssp -----------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 345689999999999999999999999999 89999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhH
Q 010276 275 VRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGY 353 (514)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~ 353 (514)
+++.+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++.. |++++|+..++++++..|.++.++
T Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 381 (537)
T 3fp2_A 302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVP 381 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 9999999999999999999999999999999999999999999999999999888 999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhCCCC
Q 010276 354 IMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQF----------SKVKEALYAAREAMKAMPQS 416 (514)
Q Consensus 354 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~ 416 (514)
..+|.++...|++++|+..|+++++..|+. ..+..+|.++... |++++|+..++++++.+|++
T Consensus 382 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 461 (537)
T 3fp2_A 382 TFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS 461 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999987654 2367778999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHH
Q 010276 417 AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAAL 456 (514)
Q Consensus 417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 456 (514)
+.++..+|.++... |++++|+..|+++++++|+.+....
T Consensus 462 ~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 462 EQAKIGLAQLKLQM-EKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999 9999999999999999999877654
No 12
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.7e-37 Score=294.23 Aligned_cols=384 Identities=13% Similarity=0.035 Sum_probs=296.7
Q ss_pred hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHH
Q 010276 39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCH 118 (514)
Q Consensus 39 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 118 (514)
....+..+..+|.++...|++++|+++|++|+++.+..... ...+....++..+|.+|
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~----------------------~~~~~~~~~~~nla~~y 104 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHAD----------------------QAEIRSLVTWGNYAWVY 104 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGG----------------------GCTTTTHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcc----------------------ccchHHHHHHHHHHHHH
Confidence 44556788899999999999999999999999885432110 01224456678899999
Q ss_pred HhcCCHHHHHHHHhcCC---------CCCccHHHHHHHHHHHHhc--CChhhHHHHHHHHHhcCCCCHHHHHHHHHhccC
Q 010276 119 FALGETKAAIVEMEGIP---------SKARNLQMSLLMAKLYRNS--RHNRGAVACYKECLRHCPFFIEAITALAELGAT 187 (514)
Q Consensus 119 ~~~g~~~~A~~~~~~~~---------~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 187 (514)
..+|++++|+..++++. ..+..+.++..+|.++... +++++|+.+|+++++.+|+++.++..++.+
T Consensus 105 ~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~--- 181 (472)
T 4g1t_A 105 YHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIA--- 181 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHH---
T ss_pred HHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH---
Confidence 99999999998887631 1245678888888776654 579999999999999999999998776333
Q ss_pred cccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh----C
Q 010276 188 PKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAII----G 263 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----~ 263 (514)
...+...+++++|++.++++++.+|+++.++..+|..+... |
T Consensus 182 ----------------------------------~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 227 (472)
T 4g1t_A 182 ----------------------------------SYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGE 227 (472)
T ss_dssp ----------------------------------HHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC----
T ss_pred ----------------------------------HHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhh
Confidence 22234558889999999999999999999998888776654 6
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh--------------
Q 010276 264 KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-------------- 329 (514)
Q Consensus 264 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------- 329 (514)
++++|..++++++..+|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++..
T Consensus 228 ~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~ 307 (472)
T 4g1t_A 228 EEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMY 307 (472)
T ss_dssp --CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 788999999999999999999999999999999999999999999999999999999999988753
Q ss_pred ------cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChH----HHHHHHHH-HHhcCC
Q 010276 330 ------KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLR----SYQGLVHS-YLQFSK 398 (514)
Q Consensus 330 ------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~l~~~-~~~~~~ 398 (514)
+.+++|+..+++++..+|.++.++..+|.++...|++++|+..|+++++..|++. .+..+|.+ ....|+
T Consensus 308 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (472)
T 4g1t_A 308 GKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKC 387 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCC
Confidence 3356889999999999999999999999999999999999999999999988762 35566654 457899
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHH
Q 010276 399 VKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERY 478 (514)
Q Consensus 399 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 478 (514)
+++|+..|++++++.|++.... +....+...+++++..+|+++.++..+|.++...|++++|+++|+++
T Consensus 388 ~~~Ai~~y~kal~i~~~~~~~~-----------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kA 456 (472)
T 4g1t_A 388 EDKAIHHFIEGVKINQKSREKE-----------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERG 456 (472)
T ss_dssp HHHHHHHHHHHHHSCCCCHHHH-----------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHhcCcccHHHH-----------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999875432 33455667788899999999999999999999999999999999999
Q ss_pred HhhCCCch-HHHHHH
Q 010276 479 LKDWADDS-LHVKLA 492 (514)
Q Consensus 479 ~~~~~~~~-~~~~l~ 492 (514)
++..|..+ +...+|
T Consensus 457 Le~~~~~p~a~~~~G 471 (472)
T 4g1t_A 457 LESGSLIPSASSWNG 471 (472)
T ss_dssp ---------------
T ss_pred HhcCCCCCcHhhcCC
Confidence 99888764 555555
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.2e-35 Score=275.21 Aligned_cols=320 Identities=14% Similarity=0.131 Sum_probs=298.9
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhc
Q 010276 107 ENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELG 185 (514)
Q Consensus 107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 185 (514)
+++.++.+|.++...|++++|+..++++ ...|.++.+++.+|.++...|++++|+..|+++++.+|++..++..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l---- 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQR---- 77 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH----
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHH----
Confidence 4678899999999999999999999995 44588999999999999999999999999999999999998887665
Q ss_pred cCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CcHHHHHHH-------
Q 010276 186 ATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFP---NNIHILLEM------- 255 (514)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~l------- 255 (514)
|.++...|++++|+..++++++..| +++.++..+
T Consensus 78 ------------------------------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 121 (359)
T 3ieg_A 78 ------------------------------------GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ 121 (359)
T ss_dssp ------------------------------------HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHH
Confidence 8889999999999999999999999 888888777
Q ss_pred -----HHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-
Q 010276 256 -----AKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER- 329 (514)
Q Consensus 256 -----a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~- 329 (514)
|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++..
T Consensus 122 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 201 (359)
T 3ieg_A 122 RLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQL 201 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cChhHHHHHHHHHHHhcccCchhHH------------HHHHHHHhcCChHHHHHHHHHhHhhcCChH-----HHHHHHHH
Q 010276 330 KDERGALSYAEKSIRIDERHIPGYI------------MKGNLLLSMKRPEAAVIAFRGAQELRPDLR-----SYQGLVHS 392 (514)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~l~~~ 392 (514)
|++++|+..++++++..|+++..+. .+|.++...|++++|+..++++++..|++. .+..+|.+
T Consensus 202 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 202 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHC 281 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 9999999999999999999887654 448889999999999999999999999862 36679999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q 010276 393 YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGR 467 (514)
Q Consensus 393 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 467 (514)
+...|++++|+..++++++.+|+++.++..+|.++... |++++|+..|+++++++|+++.++..++.+....++
T Consensus 282 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 282 FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIE-EMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 999999999999999999999999999988776543
No 14
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.7e-34 Score=276.43 Aligned_cols=345 Identities=14% Similarity=0.070 Sum_probs=223.6
Q ss_pred CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHh
Q 010276 138 ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLH 217 (514)
Q Consensus 138 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (514)
+.....+..+|.++..+|++++|+..|++++++.+... ....++.....
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~-------------------------------~~~~~~~~~~~ 96 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEH-------------------------------ADQAEIRSLVT 96 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS-------------------------------GGGCTTTTHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcC-------------------------------ccccchHHHHH
Confidence 44567788999999999999999999999987632100 00011222223
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhC--ChHHHHHHHHHHHhhCCCCHHHHH
Q 010276 218 RYVEAQCCIASNDYKGGLELFAELLQR--------FPNNIHILLEMAKVDAIIG--KNDEAILNFEKVRSIDPYIMTYMD 287 (514)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~ 287 (514)
+..+|.++...|++++|+..+++++.. .+..+.++..+|.++...| ++++|+.+|+++++++|+++.++.
T Consensus 97 ~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~ 176 (472)
T 4g1t_A 97 WGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTS 176 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 334477777777777777777777653 2334566666666665543 567777777777777777777777
Q ss_pred HHHHHHHH---hCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-----cChhHHHHHHHHHHHhcccCchhHHHHHHH
Q 010276 288 EYAMLLKV---KCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-----KDERGALSYAEKSIRIDERHIPGYIMKGNL 359 (514)
Q Consensus 288 ~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 359 (514)
.++.++.. .++.++|++.++++++++|+++.++..+|..+.. +++++|..++++++..+|..+.++..+|.+
T Consensus 177 ~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~ 256 (472)
T 4g1t_A 177 GLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKF 256 (472)
T ss_dssp HHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 76666443 3555677777777777777777777766655443 566677777777777777777777777777
Q ss_pred HHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhhCCCCHHH
Q 010276 360 LLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF-------------------SKVKEALYAAREAMKAMPQSAKA 419 (514)
Q Consensus 360 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~-------------------~~~~~A~~~~~~~~~~~p~~~~~ 419 (514)
+...|++++|+..|+++++..|++ .++..+|.+|... +.+++|+..+++++..+|.+..+
T Consensus 257 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 336 (472)
T 4g1t_A 257 YRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRV 336 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCC
T ss_pred HHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhh
Confidence 777777777777777777777776 5666666666432 23566777777777777777777
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChH---HHHHHHHHH-HHcCChhHHHHHHHHHHhhC-------------
Q 010276 420 LKLVGDVHASNASGREKAKKFYESALRLEPGYLG---AALALAELH-VIEGRNGDAVSLLERYLKDW------------- 482 (514)
Q Consensus 420 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~la~~~-~~~g~~~~A~~~~~~~~~~~------------- 482 (514)
+..+|.++... |++++|+.+|+++++.+|++.. ++..+|.+. ...|++++|+..|++++++.
T Consensus 337 ~~~lg~~~~~~-~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l 415 (472)
T 4g1t_A 337 CSILASLHALA-DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKL 415 (472)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred hhhHHHHHHHh-ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 77777777776 7777777777777777665433 344455433 45667777777777766654
Q ss_pred -----------CCc-hHHHHHHHHHHHhccHHHHHHHHHHHhcC
Q 010276 483 -----------ADD-SLHVKLAQVFAATNMLQEALSHYEAALRL 514 (514)
Q Consensus 483 -----------~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~l 514 (514)
|++ .++..+|.+|...|++++|+++|++|+++
T Consensus 416 ~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 416 QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444 48999999999999999999999999874
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.3e-34 Score=260.02 Aligned_cols=284 Identities=15% Similarity=0.119 Sum_probs=197.5
Q ss_pred CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHh
Q 010276 138 ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLH 217 (514)
Q Consensus 138 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (514)
+.++..+..+|..+...|++++|+..|+++++.+|.+..++..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~------------------------------------ 62 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVH------------------------------------ 62 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHH------------------------------------
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHH------------------------------------
Confidence 55666677777777777777777777777777777665554433
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 010276 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG-KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK 296 (514)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (514)
+.++...|++++|+..++++++.+|+++.++..+|.++...| ++++|+..|+++++.+|.++.++..+|.++...
T Consensus 63 ----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 138 (330)
T 3hym_B 63 ----IGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVE 138 (330)
T ss_dssp ----HHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHH
T ss_pred ----HHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc
Confidence 566667777777777777777777777777777777777777 777777777777777777777777777777777
Q ss_pred CChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHH
Q 010276 297 CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRG 375 (514)
Q Consensus 297 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 375 (514)
|++++|+..+++++...|++...+..+|.++.. |++++|+..+++++...|.++.++..+|.++...|++++|+..+++
T Consensus 139 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 218 (330)
T 3hym_B 139 SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLD 218 (330)
T ss_dssp TCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 777777777777777777777777667766666 7777777777777777777767777777777777777777777777
Q ss_pred hHhhc---------CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 010276 376 AQELR---------PDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESAL 445 (514)
Q Consensus 376 ~~~~~---------~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~ 445 (514)
+++.. |.. .++..+|.++...|++++|+..++++++..|+++.++..+|.++... |++++|+.+|++++
T Consensus 219 a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al 297 (330)
T 3hym_B 219 ALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM-GNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH-TCHHHHHHHHHTTT
T ss_pred HHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 76654 222 45666666666666666666666666666666666666666666666 66666666666666
Q ss_pred hhCCCChHHHHHHHHHH
Q 010276 446 RLEPGYLGAALALAELH 462 (514)
Q Consensus 446 ~~~~~~~~~~~~la~~~ 462 (514)
+++|+++.++..++.++
T Consensus 298 ~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 298 GLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp TTCSCCHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHH
Confidence 66666666666666665
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.4e-33 Score=256.57 Aligned_cols=284 Identities=13% Similarity=0.050 Sum_probs=270.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 010276 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (514)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (514)
.+..|..++..|++++|+..++++++.+|.++.++..++.++...|++++|+..++++++.+|.++.++..+|.++...|
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 104 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVG 104 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhh
Confidence 45669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHH
Q 010276 298 -DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRG 375 (514)
Q Consensus 298 -~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 375 (514)
++++|+..+++++...|.++.++..+|.++.. |++++|+..+++++...|.+...+..+|.++...|++++|+..+++
T Consensus 105 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (330)
T 3hym_B 105 HKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQ 184 (330)
T ss_dssp SCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999999999999888 9999999999999999999999999999999999999999999999
Q ss_pred hHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 010276 376 AQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAM---------PQSAKALKLVGDVHASNASGREKAKKFYESAL 445 (514)
Q Consensus 376 ~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~ 445 (514)
+++..|++ .++..+|.++...|++++|+..+++++... |..+.++..+|.++... |++++|+..|++++
T Consensus 185 al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 185 ALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL-KKYAEALDYHRQAL 263 (330)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHH
Confidence 99999998 889999999999999999999999999986 66788999999999998 99999999999999
Q ss_pred hhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHH-HHhccHH
Q 010276 446 RLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVF-AATNMLQ 502 (514)
Q Consensus 446 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~-~~~g~~~ 502 (514)
+.+|+++.++..+|.++...|++++|+..++++++..|++. ++..++.++ ...|+.+
T Consensus 264 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 264 VLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred hhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999999999999999999999999999999999999875 999999988 5666653
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=4.7e-34 Score=265.49 Aligned_cols=287 Identities=18% Similarity=0.112 Sum_probs=220.6
Q ss_pred HHHhcCHHHHHH-HHHHHHHhCCCcH----HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCh
Q 010276 225 CIASNDYKGGLE-LFAELLQRFPNNI----HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (514)
Q Consensus 225 ~~~~~~~~~A~~-~~~~~~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (514)
+...|++++|+. .+++++...|+++ ..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 334466666666 6666666555543 34666677777777777777777777777777766777777777777777
Q ss_pred hHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHH----------------HHHHHHHh
Q 010276 300 SKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYI----------------MKGNLLLS 362 (514)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~ 362 (514)
++|+..+++++...|+++.++..+|.++.. |++++|+..+++++...|.+...+. .++.++ .
T Consensus 115 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 193 (368)
T 1fch_A 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-S 193 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-H
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-h
Confidence 777777777777777777777777666666 6677777777777776666655554 466666 8
Q ss_pred cCChHHHHHHHHHhHhhcCC--h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHH
Q 010276 363 MKRPEAAVIAFRGAQELRPD--L-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKK 439 (514)
Q Consensus 363 ~~~~~~A~~~~~~~~~~~~~--~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~ 439 (514)
.|++++|+..|+++++..|+ . .++..+|.++...|++++|+..+++++...|+++.++..+|.++... |++++|+.
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANG-NQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc-CCHHHHHH
Confidence 89999999999999999988 4 77889999999999999999999999999999999999999999998 99999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc------------hHHHHHHHHHHHhccHHHHHHH
Q 010276 440 FYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD------------SLHVKLAQVFAATNMLQEALSH 507 (514)
Q Consensus 440 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~l~~~~~~~g~~~~A~~~ 507 (514)
.|+++++.+|+++.++..+|.++...|++++|+..|+++++..|++ .++..+|.++..+|++++|..+
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 9999999999999999999999999999999999999999988765 4889999999999999999988
Q ss_pred HHHHhc
Q 010276 508 YEAALR 513 (514)
Q Consensus 508 ~~~al~ 513 (514)
++++++
T Consensus 353 ~~~~l~ 358 (368)
T 1fch_A 353 DARDLS 358 (368)
T ss_dssp HTTCHH
T ss_pred HHHHHH
Confidence 887664
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=4.8e-33 Score=258.71 Aligned_cols=295 Identities=15% Similarity=0.078 Sum_probs=261.0
Q ss_pred HHHhcCChhhHHH-HHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHh
Q 010276 150 LYRNSRHNRGAVA-CYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIAS 228 (514)
Q Consensus 150 ~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (514)
++...|++++|+. .|++++...|.++.. .....+.+|..+...
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~ 77 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLR------------------------------------DHPQPFEEGLRRLQE 77 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTT------------------------------------TCSSHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCccc------------------------------------chHHHHHHHHHHHHC
Confidence 4556688888888 888888877754311 111234569999999
Q ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHH
Q 010276 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHD 308 (514)
Q Consensus 229 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 308 (514)
|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++
T Consensus 78 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 157 (368)
T 1fch_A 78 GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRD 157 (368)
T ss_dssp TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCChHHHH----------------HHHHHHhhcChhHHHHHHHHHHHhccc--CchhHHHHHHHHHhcCChHHHH
Q 010276 309 LLSIDPSRPEVFV----------------ALSVLWERKDERGALSYAEKSIRIDER--HIPGYIMKGNLLLSMKRPEAAV 370 (514)
Q Consensus 309 ~~~~~~~~~~~~~----------------~l~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~ 370 (514)
++...|.++..+. .++.++..|++++|+..+++++..+|. ++.++..+|.++...|++++|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 237 (368)
T 1fch_A 158 WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 237 (368)
T ss_dssp HHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999887765 466777559999999999999999999 7899999999999999999999
Q ss_pred HHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC
Q 010276 371 IAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEP 449 (514)
Q Consensus 371 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~ 449 (514)
..|++++...|++ .++..+|.++...|++++|+..+++++...|+++.++..+|.++... |++++|+..|++++++.|
T Consensus 238 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 238 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL-GAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCC
Confidence 9999999999997 88999999999999999999999999999999999999999999999 999999999999999998
Q ss_pred CC-----------hHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276 450 GY-----------LGAALALAELHVIEGRNGDAVSLLERYLKD 481 (514)
Q Consensus 450 ~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (514)
++ +.++..+|.++...|++++|..+++++++.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 88 889999999999999999999998877654
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=100.00 E-value=3.6e-30 Score=248.09 Aligned_cols=381 Identities=13% Similarity=0.092 Sum_probs=330.0
Q ss_pred hhHHHHHHHHhhHhh----hhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHH
Q 010276 41 LKAENLIILGDSLFR----DREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIAS 116 (514)
Q Consensus 41 ~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~ 116 (514)
..+++++.+|..|+. .+++++|+.+|+++++. .++++.+.+|.
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~---------------------------------~~~~a~~~Lg~ 83 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ---------------------------------GYTPAEYVLGL 83 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---------------------------------TCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC---------------------------------CCHHHHHHHHH
Confidence 457899999999999 89999999999999876 55678889999
Q ss_pred HHHh----cCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCc
Q 010276 117 CHFA----LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRN----SRHNRGAVACYKECLRHCPFFIEAITALAELGATP 188 (514)
Q Consensus 117 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 188 (514)
+|.. .+++++|+..+++... ..++.+++.+|.+|.. .+++++|+..|+++.+. .++.++..+
T Consensus 84 ~y~~g~g~~~~~~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~L------- 153 (490)
T 2xm6_A 84 RYMNGEGVPQDYAQAVIWYKKAAL-KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSM------- 153 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH-------
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH-------
Confidence 9998 9999999999998533 3588999999999998 88999999999999875 456666555
Q ss_pred ccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---
Q 010276 189 KDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIA----SNDYKGGLELFAELLQRFPNNIHILLEMAKVDAI--- 261 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~--- 261 (514)
|.++.. .+++++|+.+|+++.+. .++.+++.+|.+|..
T Consensus 154 ---------------------------------g~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g 198 (490)
T 2xm6_A 154 ---------------------------------GDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLG 198 (490)
T ss_dssp ---------------------------------HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred ---------------------------------HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCC
Confidence 666665 68999999999999876 578999999999999
Q ss_pred -hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-----cC
Q 010276 262 -IGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV----KCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-----KD 331 (514)
Q Consensus 262 -~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~ 331 (514)
.+++++|+.+|+++.+. .++.++..+|.++.. .+++++|+.+++++.+. .++.+++.+|.++.. ++
T Consensus 199 ~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d 274 (490)
T 2xm6_A 199 VERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKE 274 (490)
T ss_dssp SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCC
T ss_pred CCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCC
Confidence 89999999999999875 468899999999997 89999999999999875 678899999998876 78
Q ss_pred hhHHHHHHHHHHHhcccCchhHHHHHHHHHhc-----CChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcC---CHHHHH
Q 010276 332 ERGALSYAEKSIRIDERHIPGYIMKGNLLLSM-----KRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFS---KVKEAL 403 (514)
Q Consensus 332 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~ 403 (514)
+++|+.+|+++.+. .++.+++.+|.++... +++++|+..|+++.+.. +..+++.+|.+|...| ++++|+
T Consensus 275 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 275 PLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 89999999999865 5678999999999988 99999999999998863 3378999999999866 899999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHh----cCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCChhHHHHHH
Q 010276 404 YAAREAMKAMPQSAKALKLVGDVHAS----NASGREKAKKFYESALRLEPGYLGAALALAELHVI----EGRNGDAVSLL 475 (514)
Q Consensus 404 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~ 475 (514)
.+|+++++. .++.+++.+|.+|.. . +++++|+.+|+++++.. ++.+++.+|.+|.. .+++++|+.+|
T Consensus 352 ~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 426 (490)
T 2xm6_A 352 EWFRKAAAK--GEKAAQFNLGNALLQGKGVK-KDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWF 426 (490)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHC--CCHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999999986 679999999999998 7 89999999999999864 68999999999999 89999999999
Q ss_pred HHHHhhCCC---c-hHHHHHHHHHHHhccH--HHHHHHHHHH
Q 010276 476 ERYLKDWAD---D-SLHVKLAQVFAATNML--QEALSHYEAA 511 (514)
Q Consensus 476 ~~~~~~~~~---~-~~~~~l~~~~~~~g~~--~~A~~~~~~a 511 (514)
+++++..|+ + .+...++.++....+. +.|..+|+++
T Consensus 427 ~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~~~~~~ 468 (490)
T 2xm6_A 427 DTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEKY 468 (490)
T ss_dssp HHHHHHHCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCcCCHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence 999999954 4 4888888877654333 2366666664
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=100.00 E-value=2.9e-32 Score=252.99 Aligned_cols=263 Identities=16% Similarity=0.090 Sum_probs=224.3
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh
Q 010276 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER 329 (514)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 329 (514)
..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 44778888888888888888888888888888888888888888888888888888888888888888888888887777
Q ss_pred -cChhHHHHHHHHHHHhcccCchhHHHH----------HHHHHhcCChHHHHHHHHHhHhhcCC--h-HHHHHHHHHHHh
Q 010276 330 -KDERGALSYAEKSIRIDERHIPGYIMK----------GNLLLSMKRPEAAVIAFRGAQELRPD--L-RSYQGLVHSYLQ 395 (514)
Q Consensus 330 -~~~~~A~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~A~~~~~~~~~~~~~--~-~~~~~l~~~~~~ 395 (514)
|++++|+..++++++..|.++..+..+ |.++...|++++|+..|+++++..|+ + .++..+|.++..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 888888888888888888766665544 89999999999999999999999998 5 789999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHH
Q 010276 396 FSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLL 475 (514)
Q Consensus 396 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 475 (514)
.|++++|+..++++++..|+++.++..+|.++... |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|
T Consensus 226 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 304 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANG-DRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNF 304 (365)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCC-------------chHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 476 ERYLKDWAD-------------DSLHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 476 ~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
+++++..|+ ..+|..++.++..+|+.+.|....++.++
T Consensus 305 ~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 305 LTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 999999876 35899999999999999999988776543
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=100.00 E-value=1.1e-28 Score=237.63 Aligned_cols=350 Identities=13% Similarity=0.059 Sum_probs=311.4
Q ss_pred ChhHHHHHHHHHHHh----cCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCHHH
Q 010276 106 NENEVKYKIASCHFA----LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRN----SRHNRGAVACYKECLRHCPFFIEA 177 (514)
Q Consensus 106 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~ 177 (514)
.++++.+.+|.++.. .+++++|+..+++.... .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a 113 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQA 113 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence 678889999999998 89999999999985332 678999999999999 99999999999999875 45666
Q ss_pred HHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcHHHHH
Q 010276 178 ITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIA----SNDYKGGLELFAELLQRFPNNIHILL 253 (514)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~ 253 (514)
+..| |.++.. .+++++|+.+|+++.+. +++.+++
T Consensus 114 ~~~L----------------------------------------g~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~ 151 (490)
T 2xm6_A 114 QQNL----------------------------------------GVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQ 151 (490)
T ss_dssp HHHH----------------------------------------HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHH----------------------------------------HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence 6555 666776 78999999999999775 5789999
Q ss_pred HHHHHHHH----hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCChhHHHHHHHHHhhcCCCChHHHHHHHH
Q 010276 254 EMAKVDAI----IGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV----KCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325 (514)
Q Consensus 254 ~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 325 (514)
.+|.+|.. .+++++|+.+|+++.+. .++.++..+|.++.. .+++++|+.+|+++.+. .++.++..+|.
T Consensus 152 ~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 227 (490)
T 2xm6_A 152 SMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLAD 227 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 99999998 88999999999999886 578999999999998 89999999999999875 57889999999
Q ss_pred HHhh-----cChhHHHHHHHHHHHhcccCchhHHHHHHHHHh----cCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhc
Q 010276 326 LWER-----KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS----MKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQF 396 (514)
Q Consensus 326 ~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 396 (514)
++.. +++++|+.+|+++++. .++.+++.+|.++.. .+++++|+..|+++.+.. +..+++.+|.+|...
T Consensus 228 ~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~~ 304 (490)
T 2xm6_A 228 MYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG-NSDGQYYLAHLYDKG 304 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcC
Confidence 9884 7899999999999875 457889999999998 899999999999998752 347899999999998
Q ss_pred -----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----
Q 010276 397 -----SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS---GREKAKKFYESALRLEPGYLGAALALAELHVI---- 464 (514)
Q Consensus 397 -----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~---- 464 (514)
+++++|+.+|+++.+. .++.+++.+|.++... | ++++|+.+|+++++. +++.+++.+|.++..
T Consensus 305 ~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~-g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~ 379 (490)
T 2xm6_A 305 AEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRL-GSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGV 379 (490)
T ss_dssp BTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSS
T ss_pred CCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhC-CCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCC
Confidence 9999999999999885 5678999999999985 6 789999999999987 578999999999999
Q ss_pred cCChhHHHHHHHHHHhhCCCchHHHHHHHHHHH----hccHHHHHHHHHHHhc
Q 010276 465 EGRNGDAVSLLERYLKDWADDSLHVKLAQVFAA----TNMLQEALSHYEAALR 513 (514)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~ 513 (514)
.+++++|+.+|+++++.. +..+++.+|.+|.. .+++++|..+|+++++
T Consensus 380 ~~~~~~A~~~~~~A~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 380 KKDEQQAAIWMRKAAEQG-LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 899999999999999864 45699999999999 8999999999999975
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=100.00 E-value=4.9e-29 Score=242.61 Aligned_cols=407 Identities=10% Similarity=0.029 Sum_probs=308.0
Q ss_pred hhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHh
Q 010276 41 LKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120 (514)
Q Consensus 41 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 120 (514)
.+..+|..++.. .+.|++++|...|+++++.+| .+..++..++.....
T Consensus 11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P-------------------------------~~~~~w~~~~~~~~~ 58 (530)
T 2ooe_A 11 YDLDAWSILIRE-AQNQPIDKARKTYERLVAQFP-------------------------------SSGRFWKLYIEAEIK 58 (530)
T ss_dssp TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCT-------------------------------TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCC-------------------------------CCHHHHHHHHHHHHh
Confidence 356688888884 778999999999999999987 455677778888888
Q ss_pred cCCHHHHHHHHhcCCCC-CccHHHHHHHHH-HHHhcCChhhHHH----HHHHHHhc---CCCCHHHHHHHHHhccCcccH
Q 010276 121 LGETKAAIVEMEGIPSK-ARNLQMSLLMAK-LYRNSRHNRGAVA----CYKECLRH---CPFFIEAITALAELGATPKDI 191 (514)
Q Consensus 121 ~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~-~~~~~g~~~~A~~----~~~~~l~~---~p~~~~~~~~l~~~~~~~~~~ 191 (514)
.|++++|..++++.... | +.+.|..++. .....|++++|.+ .|++++.. +|.+...|...+.+.......
T Consensus 59 ~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~ 137 (530)
T 2ooe_A 59 AKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAV 137 (530)
T ss_dssp TTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCC
T ss_pred cCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCc
Confidence 99999999999995444 6 6778888875 4456788887776 77777654 566777776654432110000
Q ss_pred hHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHH----------
Q 010276 192 ISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI--HILLEMAKVD---------- 259 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~la~~~---------- 259 (514)
.. +...|++++|..+|+++++ .|.+. ..|...+...
T Consensus 138 ---------------------~~----------~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~ 185 (530)
T 2ooe_A 138 ---------------------GS----------YAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKK 185 (530)
T ss_dssp ---------------------SS----------TTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ---------------------cc----------HHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHH
Confidence 00 1135788999999999988 56542 3333222211
Q ss_pred ---HHhCChHHHHHHHHH------HHhh-----CCCC-------HHHHHHHHHHHHHh----CCh----hHHHHHHHHHh
Q 010276 260 ---AIIGKNDEAILNFEK------VRSI-----DPYI-------MTYMDEYAMLLKVK----CDY----SKLSKLVHDLL 310 (514)
Q Consensus 260 ---~~~~~~~~A~~~~~~------~~~~-----~~~~-------~~~~~~l~~~~~~~----~~~----~~A~~~~~~~~ 310 (514)
...+++..|...+.. .++. .|.. ...|..+....... ++. ..++..|++++
T Consensus 186 ~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al 265 (530)
T 2ooe_A 186 MIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCL 265 (530)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHH
Confidence 123567777776665 3332 3332 23444443322221 222 47788999999
Q ss_pred hcCCCChHHHHHHHHHHh--------hcChh-------HHHHHHHHHHH-hcccCchhHHHHHHHHHhcCChHHHHHHHH
Q 010276 311 SIDPSRPEVFVALSVLWE--------RKDER-------GALSYAEKSIR-IDERHIPGYIMKGNLLLSMKRPEAAVIAFR 374 (514)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~--------~~~~~-------~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 374 (514)
...|.++.+|..+|.++. .|+++ +|+..|+++++ ..|+++.+|..+|.++...|++++|...|+
T Consensus 266 ~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~ 345 (530)
T 2ooe_A 266 LVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYN 345 (530)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999876 37876 89999999997 789999999999999999999999999999
Q ss_pred HhHhhcCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HhcCCChHHHHHHHHHHHhhCCCC
Q 010276 375 GAQELRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH-ASNASGREKAKKFYESALRLEPGY 451 (514)
Q Consensus 375 ~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~~~~~A~~~~~~a~~~~~~~ 451 (514)
++++..|.+ .+|..++.++.+.|++++|...|+++++..|.....+...+.+. ... |++++|...|+++++..|++
T Consensus 346 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~-~~~~~A~~~~e~al~~~p~~ 424 (530)
T 2ooe_A 346 RLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS-KDKSVAFKIFELGLKKYGDI 424 (530)
T ss_dssp HHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHT-CCHHHHHHHHHHHHHHHTTC
T ss_pred HHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHCCCC
Confidence 999998876 47899999999999999999999999998888777777666653 345 99999999999999999999
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-----hHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 452 LGAALALAELHVIEGRNGDAVSLLERYLKDWADD-----SLHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
+.+|..++.++...|+.++|..+|++++...|.+ .+|...+......|+.+.+..+++++++
T Consensus 425 ~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 425 PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999986543 2777778888888999999999988864
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=100.00 E-value=6.1e-31 Score=244.06 Aligned_cols=263 Identities=13% Similarity=0.036 Sum_probs=241.1
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 010276 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK 296 (514)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (514)
..+.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT 146 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Confidence 35667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhhcCCCChHHHHHH----------HHHHhh-cChhHHHHHHHHHHHhccc--CchhHHHHHHHHHhc
Q 010276 297 CDYSKLSKLVHDLLSIDPSRPEVFVAL----------SVLWER-KDERGALSYAEKSIRIDER--HIPGYIMKGNLLLSM 363 (514)
Q Consensus 297 ~~~~~A~~~~~~~~~~~~~~~~~~~~l----------~~~~~~-~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 363 (514)
|++++|+..+++++...|+++..+..+ |.++.. |++++|+..+++++..+|. ++.++..+|.++...
T Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 999999999999999999877666554 777776 9999999999999999999 889999999999999
Q ss_pred CChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 010276 364 KRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYE 442 (514)
Q Consensus 364 ~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 442 (514)
|++++|+..|+++++..|++ .+|..+|.++...|++++|+..|+++++.+|+++.++..+|.++... |++++|+..|+
T Consensus 227 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 305 (365)
T 4eqf_A 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL-GAYREAVSNFL 305 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC-CCHHHHHHHHH
Confidence 99999999999999999998 88999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHhhCCC------------ChHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 010276 443 SALRLEPG------------YLGAALALAELHVIEGRNGDAVSLLERYLK 480 (514)
Q Consensus 443 ~a~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (514)
+++++.|+ +..+|..++.++..+|+.+.|....++.+.
T Consensus 306 ~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 306 TALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 99999877 367899999999999999998887776443
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.98 E-value=1.8e-30 Score=237.09 Aligned_cols=265 Identities=15% Similarity=0.091 Sum_probs=184.5
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 010276 216 LHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV 295 (514)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 295 (514)
...+.+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCChhHHHHHHHHHhhcCCCChHHHHHH--------------HH-HHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHH
Q 010276 296 KCDYSKLSKLVHDLLSIDPSRPEVFVAL--------------SV-LWER-KDERGALSYAEKSIRIDERHIPGYIMKGNL 359 (514)
Q Consensus 296 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 359 (514)
.|++++|+..+++++...|.+...+..+ +. ++.. |++++|+..++++++..|.++.++..+|.+
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 181 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVL 181 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 9999999999999999999887776665 33 2222 555566666666655555555555555555
Q ss_pred HHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHH
Q 010276 360 LLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAK 438 (514)
Q Consensus 360 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~ 438 (514)
+...|++++|+..++++++..|++ .++..+|.++...|++++|+..++++++..|+++.++..+|.++... |++++|+
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-g~~~~A~ 260 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM-SQYDLAA 260 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-ccHHHHH
Confidence 555555555555555555555554 45555555555555555555555555555555555555555555555 5555555
Q ss_pred HHHHHHHhhCCC------------ChHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276 439 KFYESALRLEPG------------YLGAALALAELHVIEGRNGDAVSLLERYLKD 481 (514)
Q Consensus 439 ~~~~~a~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (514)
..|+++++..|+ ++.++..++.++...|++++|...++++++.
T Consensus 261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 555555555555 4555555555555555555555555554443
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.98 E-value=4.1e-30 Score=234.73 Aligned_cols=264 Identities=16% Similarity=0.098 Sum_probs=247.8
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHh
Q 010276 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE 328 (514)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (514)
+..++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred h-cChhHHHHHHHHHHHhcccCchhHHHH--------------HH-HHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHH
Q 010276 329 R-KDERGALSYAEKSIRIDERHIPGYIMK--------------GN-LLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVH 391 (514)
Q Consensus 329 ~-~~~~~A~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~ 391 (514)
. |++++|+..+++++...|.+...+..+ +. ++...|++++|+..++++++..|++ .++..+|.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 180 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 8 999999999999999999998888777 66 7889999999999999999999987 78999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHH
Q 010276 392 SYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDA 471 (514)
Q Consensus 392 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 471 (514)
++...|++++|+..+++++...|+++.++..+|.++... |++++|+..|+++++..|+++.++..+|.++...|++++|
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANG-NRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence 999999999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCC------------c-hHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 472 VSLLERYLKDWAD------------D-SLHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 472 ~~~~~~~~~~~~~------------~-~~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
+..++++++..|+ . .++..+|.++...|++++|...++++++
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999998 4 4999999999999999999999987764
No 26
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.98 E-value=1.2e-30 Score=239.09 Aligned_cols=253 Identities=9% Similarity=-0.007 Sum_probs=183.4
Q ss_pred HhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC-hhHHHHHHHHHhhcCCCChHHHH
Q 010276 243 QRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD-YSKLSKLVHDLLSIDPSRPEVFV 321 (514)
Q Consensus 243 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~ 321 (514)
..+|++..++..+|.++...|++++|+..|+++++++|++..+|..+|.++...|+ +++|+..+++++..+|+++.+|+
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~ 170 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH 170 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 34566666777777777777777777777777777777777777777777777775 77777777777777777777777
Q ss_pred HHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHh-cCC
Q 010276 322 ALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQ-FSK 398 (514)
Q Consensus 322 ~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~-~~~ 398 (514)
.+|.++.. |++++|+..|+++++++|++..+|..+|.++...|++++|+..|+++++++|++ .+|+.+|.++.. .|.
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence 77776666 777777777777777777777777777777777777777777777777777776 667777777777 444
Q ss_pred HHHH-----HHHHHHHHhhCCCCHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC-----
Q 010276 399 VKEA-----LYAAREAMKAMPQSAKALKLVGDVHASNAS--GREKAKKFYESALRLEPGYLGAALALAELHVIEG----- 466 (514)
Q Consensus 399 ~~~A-----~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g----- 466 (514)
.++| +..+++++.++|++..+|+.+|.++... | ++++|+..++++ +.+|+++.++..+|.++..+|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~-g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHcc-CccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 4666 4777777777777777777777777776 6 577777777776 777777777777777777764
Q ss_pred ---C-hhHHHHHHHHH-HhhCCCch-HHHHHHHHHHH
Q 010276 467 ---R-NGDAVSLLERY-LKDWADDS-LHVKLAQVFAA 497 (514)
Q Consensus 467 ---~-~~~A~~~~~~~-~~~~~~~~-~~~~l~~~~~~ 497 (514)
+ +++|+.+|+++ ++.+|... .|..++..+..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2 47777788777 77777664 66666666654
No 27
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=1.7e-29 Score=231.47 Aligned_cols=253 Identities=11% Similarity=-0.012 Sum_probs=237.0
Q ss_pred CchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCC-hHHHHHHHHHHHhhCCCCHHHHHHH
Q 010276 211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGK-NDEAILNFEKVRSIDPYIMTYMDEY 289 (514)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l 289 (514)
++.....+..+|.++...|++++|+..+++++..+|++..+|..+|.++...|+ +++|+..|+++++++|++..+|..+
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~ 172 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 172 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 455566667779999999999999999999999999999999999999999997 9999999999999999999999999
Q ss_pred HHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHh-cCChH
Q 010276 290 AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS-MKRPE 367 (514)
Q Consensus 290 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 367 (514)
|.++...|++++|+..|++++.++|++..+|..+|.++.. |++++|+.+++++++++|++..+|+.+|.++.. .|.++
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999999999999999999999999988 999999999999999999999999999999999 56658
Q ss_pred HH-----HHHHHHhHhhcCCh-HHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC-------
Q 010276 368 AA-----VIAFRGAQELRPDL-RSYQGLVHSYLQFS--KVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS------- 432 (514)
Q Consensus 368 ~A-----~~~~~~~~~~~~~~-~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~------- 432 (514)
+| +..|++++.++|++ .+|..++.++...| ++++|+..++++ +.+|+++.++..+|.++... |
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~-~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM-LENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH-HHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH-hcccccch
Confidence 88 59999999999998 88999999999988 699999999998 99999999999999999987 4
Q ss_pred --ChHHHHHHHHHH-HhhCCCChHHHHHHHHHHHHc
Q 010276 433 --GREKAKKFYESA-LRLEPGYLGAALALAELHVIE 465 (514)
Q Consensus 433 --~~~~A~~~~~~a-~~~~~~~~~~~~~la~~~~~~ 465 (514)
.+++|+.+|+++ ++++|.....|..++..+..+
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 258999999999 999999999999999887654
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.97 E-value=6.4e-28 Score=234.76 Aligned_cols=365 Identities=10% Similarity=0.026 Sum_probs=293.2
Q ss_pred ChhHHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHh
Q 010276 106 NENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAEL 184 (514)
Q Consensus 106 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 184 (514)
.+..++..++.. ...|++++|...++++ ...|.+...|..++..+...|++++|+..|++++...| +...|..++..
T Consensus 11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~ 88 (530)
T 2ooe_A 11 YDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSY 88 (530)
T ss_dssp TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 556667777774 6789999999999995 44599999999999999999999999999999999999 67777665321
Q ss_pred ccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHH----HHHHHHHh---CCCcHHHHHHHHH
Q 010276 185 GATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLE----LFAELLQR---FPNNIHILLEMAK 257 (514)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~----~~~~~~~~---~p~~~~~~~~la~ 257 (514)
.....|++++|.+ .|++++.. +|.+..+|...+.
T Consensus 89 ---------------------------------------~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~ 129 (530)
T 2ooe_A 89 ---------------------------------------VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYIN 129 (530)
T ss_dssp ---------------------------------------HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred ---------------------------------------HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 1223466666554 77777654 5677888888888
Q ss_pred HHHH---------hCChHHHHHHHHHHHhhCCCCH--HHHHHHHHHH-------------HHhCChhHHHHHHHH-----
Q 010276 258 VDAI---------IGKNDEAILNFEKVRSIDPYIM--TYMDEYAMLL-------------KVKCDYSKLSKLVHD----- 308 (514)
Q Consensus 258 ~~~~---------~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~-------------~~~~~~~~A~~~~~~----- 308 (514)
.... .|+++.|..+|+++++ .|... ..|....... ...+++..|...+..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~ 208 (530)
T 2ooe_A 130 FLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVM 208 (530)
T ss_dssp HHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 7765 7899999999999999 56542 3333333221 134567778777665
Q ss_pred -Hhhc-----CCCC-------hHHHHHHHHHHhh-----cCh----hHHHHHHHHHHHhcccCchhHHHHHHHHHh----
Q 010276 309 -LLSI-----DPSR-------PEVFVALSVLWER-----KDE----RGALSYAEKSIRIDERHIPGYIMKGNLLLS---- 362 (514)
Q Consensus 309 -~~~~-----~~~~-------~~~~~~l~~~~~~-----~~~----~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 362 (514)
.++. .|.. ...|......... ++. .+++..|++++..+|.++.+|..+|..+..
T Consensus 209 ~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~ 288 (530)
T 2ooe_A 209 KGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL 288 (530)
T ss_dssp HHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchh
Confidence 4432 2322 2344443332221 122 378899999999999999999999999986
Q ss_pred ---cCChH-------HHHHHHHHhHh-hcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHh
Q 010276 363 ---MKRPE-------AAVIAFRGAQE-LRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSA-KALKLVGDVHAS 429 (514)
Q Consensus 363 ---~~~~~-------~A~~~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~ 429 (514)
.|+++ +|...|+++++ ..|++ ..|..++.++...|++++|...|+++++..|.++ .+|..++.++..
T Consensus 289 ~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 368 (530)
T 2ooe_A 289 LAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR 368 (530)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH
T ss_pred hhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH
Confidence 79987 99999999997 78987 8899999999999999999999999999999986 699999999998
Q ss_pred cCCChHHHHHHHHHHHhhCCCChHHHHHHHHHH-HHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHH
Q 010276 430 NASGREKAKKFYESALRLEPGYLGAALALAELH-VIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSH 507 (514)
Q Consensus 430 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~ 507 (514)
. |++++|+..|+++++..|.....+...+.+. ...|++++|..+|+++++..|++. +|..++.++...|+.++|...
T Consensus 369 ~-~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 369 A-EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp H-HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred h-cCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence 8 9999999999999999998888887777663 468999999999999999999874 999999999999999999999
Q ss_pred HHHHhc
Q 010276 508 YEAALR 513 (514)
Q Consensus 508 ~~~al~ 513 (514)
|++++.
T Consensus 448 ~~~al~ 453 (530)
T 2ooe_A 448 FERVLT 453 (530)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999975
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.97 E-value=4.9e-28 Score=215.09 Aligned_cols=275 Identities=13% Similarity=0.112 Sum_probs=243.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChh
Q 010276 222 AQCCIASNDYKGGLELFAELLQRFPNN-IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300 (514)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (514)
....+..|+|.+|+..++++...+|++ .+....++++|...|+++.|+..++. .+|....++..++..+...|+.+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 667788999999999999887777776 46778899999999999999998865 25667788899999999999999
Q ss_pred HHHHHHHHHhhc--CCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhH
Q 010276 301 KLSKLVHDLLSI--DPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ 377 (514)
Q Consensus 301 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 377 (514)
+|++.+++++.. +|+++.+++.+|.++.. |++++|+..+++ |.++.++..+|.++..+|++++|+..|++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999875 69999999999999888 999999999988 8889999999999999999999999999999
Q ss_pred hhcCChH-HHHH--HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHH
Q 010276 378 ELRPDLR-SYQG--LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA 454 (514)
Q Consensus 378 ~~~~~~~-~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 454 (514)
+.+|+.. .... +..++...|++++|+..|+++++..|+++.+++.+|.++... |++++|+..|+++++.+|+++.+
T Consensus 158 ~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 158 DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ-GRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHH
Confidence 9999873 2222 224445669999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHcCChhH-HHHHHHHHHhhCCCchHHHHHHHHHHHhccHHHHHHHH
Q 010276 455 ALALAELHVIEGRNGD-AVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHY 508 (514)
Q Consensus 455 ~~~la~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 508 (514)
+.++|.++...|++++ +..+++++++..|++.... ....+.+.++++..-|
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~---d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK---EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH---HHHHHHHHHHHHHHHc
Confidence 9999999999999976 5789999999999987433 4567778888887766
No 30
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.96 E-value=1.3e-27 Score=226.41 Aligned_cols=371 Identities=13% Similarity=0.057 Sum_probs=260.1
Q ss_pred HHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCH--
Q 010276 47 IILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET-- 124 (514)
Q Consensus 47 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~-- 124 (514)
..+|..+++.|++++|+..|+++.+. +++ ++.+.+|.++...|++
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~-------------------------------~A~~~Lg~~y~~~g~~~d 53 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYS-------------------------------EAQVGLADIQVGTRDPAQ 53 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCC-------------------------------TGGGTCC-----------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCH-------------------------------HHHHHHHHHHHccCCCCC
Confidence 55899999999999999999999765 333 3444555666667777
Q ss_pred -HHHHHHHhcCCCCCccHHHHHHHHHHHHhcC-----ChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhcc
Q 010276 125 -KAAIVEMEGIPSKARNLQMSLLMAKLYRNSR-----HNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQT 198 (514)
Q Consensus 125 -~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 198 (514)
++|+..+++.... ++.+++.+|.++...| ++++|+..|+++++..+. .++..|
T Consensus 54 ~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~--~A~~~L----------------- 112 (452)
T 3e4b_A 54 IKQAEATYRAAADT--SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG--NTLIPL----------------- 112 (452)
T ss_dssp -------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS--SCHHHH-----------------
T ss_pred HHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH--HHHHHH-----------------
Confidence 8999999986543 8888999999776665 788999999999885543 355555
Q ss_pred CCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHH---HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHH----H
Q 010276 199 PNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYK---GGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAIL----N 271 (514)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~----~ 271 (514)
|.++...+... ++...+.++.. +.++.+++.+|.++...+.++++.. +
T Consensus 113 -----------------------g~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 113 -----------------------AMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp -----------------------HHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred -----------------------HHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 44444444333 34444444433 3456788889999998885554444 4
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhC---ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-----cChhHHHHHHHHHH
Q 010276 272 FEKVRSIDPYIMTYMDEYAMLLKVKC---DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-----KDERGALSYAEKSI 343 (514)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~A~~~~~~~~ 343 (514)
++.+...+| .+++.+|.++...| ++++|+..|+++.+..|.....++.+|.++.. +++++|+.+|+++.
T Consensus 168 ~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 168 CKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 444444444 48889999999999 88999999999999998888888899988876 47889999999987
Q ss_pred HhcccCchhHHHHHHH-H--HhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhhCCC
Q 010276 344 RIDERHIPGYIMKGNL-L--LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFS-----KVKEALYAAREAMKAMPQ 415 (514)
Q Consensus 344 ~~~~~~~~~~~~~~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~p~ 415 (514)
|.++.+++.+|.+ + ...+++++|+.+|+++.+.. +..+++.+|.+|. .| ++++|+.+|+++. |.
T Consensus 245 ---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g 316 (452)
T 3e4b_A 245 ---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GR 316 (452)
T ss_dssp ---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TT
T ss_pred ---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CC
Confidence 8889999999998 4 56889999999999987643 3478889998888 55 8999999999988 88
Q ss_pred CHHHHHHHHHHHHhc---CCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCChhHHHHHHHHHHhhCCCchHH
Q 010276 416 SAKALKLVGDVHASN---ASGREKAKKFYESALRLEPGYLGAALALAELHVI----EGRNGDAVSLLERYLKDWADDSLH 488 (514)
Q Consensus 416 ~~~~~~~l~~~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 488 (514)
++.+++.+|.+|..- ..++++|+.+|+++.+ ++++.+.+.||.+|.. ..++.+|..+|+++.+..+. .+.
T Consensus 317 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~ 393 (452)
T 3e4b_A 317 EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EAN 393 (452)
T ss_dssp CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHH
T ss_pred CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHH
Confidence 899999999888861 1488999999999876 4567888999998875 45889999999998876543 344
Q ss_pred HHHHHHHHH--hccHHHHHHHHHH
Q 010276 489 VKLAQVFAA--TNMLQEALSHYEA 510 (514)
Q Consensus 489 ~~l~~~~~~--~g~~~~A~~~~~~ 510 (514)
..++.+... .++..+|....++
T Consensus 394 ~~l~~l~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 394 DLATQLEAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555555433 3455666665554
No 31
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.96 E-value=4.4e-28 Score=215.03 Aligned_cols=248 Identities=13% Similarity=0.061 Sum_probs=184.3
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHH
Q 010276 140 NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRY 219 (514)
Q Consensus 140 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (514)
+++.++..|.++...|++++|+..|+++++.+|.+..++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l-------------------------------------- 43 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRR-------------------------------------- 43 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHH--------------------------------------
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH--------------------------------------
Confidence 345667788888888888888888888888888766655544
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 010276 220 VEAQCCIASNDYKGGLELFAELLQRFPNN----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV 295 (514)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 295 (514)
|.++...|++++|+..+++++. .|.+ ..++..+|.++...|++++|+..|+++++.+|.++.++..+|.++..
T Consensus 44 --~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 120 (272)
T 3u4t_A 44 --AVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN 120 (272)
T ss_dssp --HHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred --HHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 7777788888888888888887 3333 34577888888888888888888888888888888888888888888
Q ss_pred hCChhHHHHHHHHHhhcCCCChHHHHHHH-HHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCC---hHHHHH
Q 010276 296 KCDYSKLSKLVHDLLSIDPSRPEVFVALS-VLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR---PEAAVI 371 (514)
Q Consensus 296 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~ 371 (514)
.|++++|+..+++++...|.++.++..+| .++..+++++|+..++++++.+|+++.++..+|.++...|+ +++|+.
T Consensus 121 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~ 200 (272)
T 3u4t_A 121 KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKP 200 (272)
T ss_dssp TTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHH
T ss_pred ccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHH
Confidence 88888888888888888888888888888 67777888888888888888888888888888888887777 777888
Q ss_pred HHHHhHhhc---CCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 010276 372 AFRGAQELR---PDL------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHA 428 (514)
Q Consensus 372 ~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (514)
.|+++++.. |+. .++..+|.++...|++++|+.+++++++.+|+++.++-.++.+..
T Consensus 201 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 201 YYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 888877764 331 345666666666666666666666666666666666666655544
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.96 E-value=7.6e-28 Score=213.49 Aligned_cols=246 Identities=13% Similarity=0.047 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCCh----HHHHHHHH
Q 010276 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP----EVFVALSV 325 (514)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~ 325 (514)
+.++..|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++. .|.++ .++..+|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666665 33332 23566666
Q ss_pred HHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHH
Q 010276 326 LWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEAL 403 (514)
Q Consensus 326 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~ 403 (514)
++.. |++++|+..++++++.+|.++.++..+|.++...|++++|+..|+++++..|.+ .++..+|......+++++|+
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 6665 666777777777777777777777777777777777777777777777777766 56677773333444777777
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHhhC---CCC-----hHHHHHHHHHHHHcCChhHHH
Q 010276 404 YAAREAMKAMPQSAKALKLVGDVHASNASG---REKAKKFYESALRLE---PGY-----LGAALALAELHVIEGRNGDAV 472 (514)
Q Consensus 404 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~---~~~A~~~~~~a~~~~---~~~-----~~~~~~la~~~~~~g~~~~A~ 472 (514)
..++++++.+|+++.++..+|.++... |+ +++|+..|+++++.. |+. ..++..+|.++...|++++|+
T Consensus 163 ~~~~~a~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELKPNIYIGYLWRARANAAQ-DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHH-STTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHc-CcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777777777777777776 66 667777777777654 331 246666777777777777777
Q ss_pred HHHHHHHhhCCCch-HHHHHHHHHHH
Q 010276 473 SLLERYLKDWADDS-LHVKLAQVFAA 497 (514)
Q Consensus 473 ~~~~~~~~~~~~~~-~~~~l~~~~~~ 497 (514)
.+++++++.+|++. ++..++.+...
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 77777777777764 55555554443
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.96 E-value=6.5e-28 Score=205.14 Aligned_cols=196 Identities=21% Similarity=0.181 Sum_probs=103.3
Q ss_pred CCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHH
Q 010276 314 PSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVH 391 (514)
Q Consensus 314 ~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~ 391 (514)
|.++.++..+|.++.. |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++ .++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 3444444444444444 455555555555555555555555555555555555555555555555555554 44555555
Q ss_pred HHHhc-----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHH
Q 010276 392 SYLQF-----------SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAE 460 (514)
Q Consensus 392 ~~~~~-----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 460 (514)
++... |++++|+..++++++.+|+++.++..+|.++... |++++|+..|+++++++ +++.++..+|.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~-~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL-GERDKAEASLKQALALE-DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcc-cchHHHHHHHH
Confidence 55555 6666666666666666666666666666666665 66666666666666666 55666666666
Q ss_pred HHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHH
Q 010276 461 LHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAA 511 (514)
Q Consensus 461 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a 511 (514)
++...|++++|+..|+++++..|++. ++..+|.++...|++++|+..|+++
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666666666666666666553 5666666666666666666665543
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.96 E-value=9.3e-27 Score=206.83 Aligned_cols=256 Identities=10% Similarity=0.018 Sum_probs=165.7
Q ss_pred hhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHH
Q 010276 51 DSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVE 130 (514)
Q Consensus 51 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 130 (514)
+-.+..|+|..|+..+++.....|++ ..+..+.++++|+..|++++|+..
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~------------------------------~~e~~~~l~r~yi~~g~~~~al~~ 56 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPER------------------------------DVERDVFLYRAYLAQRKYGVVLDE 56 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHH------------------------------HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchh------------------------------hHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44566778888887777766554421 134556677777778888887777
Q ss_pred HhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhc--CCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCC
Q 010276 131 MEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRH--CPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFD 208 (514)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (514)
++.. .+....++..++..+...|+.++|+..+++++.. +|++..++..+
T Consensus 57 ~~~~--~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~l--------------------------- 107 (291)
T 3mkr_A 57 IKPS--SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMA--------------------------- 107 (291)
T ss_dssp SCTT--SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHH---------------------------
T ss_pred hccc--CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHH---------------------------
Confidence 6653 4456667777777777777777777777777754 47766666544
Q ss_pred cCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHH
Q 010276 209 HLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE 288 (514)
Q Consensus 209 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 288 (514)
|.++...|++++|+..+++ |+++.++..+|.++...|++++|++.|+++++.+|++......
T Consensus 108 -------------a~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~ 169 (291)
T 3mkr_A 108 -------------ASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLA 169 (291)
T ss_dssp -------------HHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -------------HHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHH
Confidence 6677777777777777776 6777777777777777777777777777777777766533332
Q ss_pred HH--HHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCC
Q 010276 289 YA--MLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR 365 (514)
Q Consensus 289 l~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (514)
.+ .++...|++++|+..|+++++..|+++.++..+|.++.. |++++|+..+++++..+|+++.++.++|.++...|+
T Consensus 170 ~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~ 249 (291)
T 3mkr_A 170 TAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK 249 (291)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 22 223334566666666666666666666666666655555 666666666666666666666666666666666666
Q ss_pred hHH-HHHHHHHhHhhcCCh
Q 010276 366 PEA-AVIAFRGAQELRPDL 383 (514)
Q Consensus 366 ~~~-A~~~~~~~~~~~~~~ 383 (514)
+++ +..+++++++.+|++
T Consensus 250 ~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 250 PPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHhCCCC
Confidence 544 345555666666655
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.96 E-value=8.9e-28 Score=204.28 Aligned_cols=210 Identities=15% Similarity=0.069 Sum_probs=141.1
Q ss_pred CCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHH
Q 010276 246 PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325 (514)
Q Consensus 246 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 325 (514)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 55566666777777777777777777777777777777777777777777776666666666666666666666666666
Q ss_pred HHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHH
Q 010276 326 LWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALY 404 (514)
Q Consensus 326 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~ 404 (514)
++.... ...+. .....|++++|+..|+++++.+|++ .++..+|.++...|++++|+.
T Consensus 82 ~~~~~~------------~~~~~----------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 82 AYVALY------------RQAED----------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp HHHHHH------------HTCSS----------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhh------------hhhhh----------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHH
Confidence 554310 00000 1122378888888888888888887 778888888888888888888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 010276 405 AAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYL 479 (514)
Q Consensus 405 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 479 (514)
.|+++++.+ +++.++..+|.++... |++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++-
T Consensus 140 ~~~~al~~~-~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 140 SLKQALALE-DTPEIRSALAELYLSM-GRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHC-CCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHhcc-cchHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 888888888 7888888888888887 888888888888888888888888888888888888888888887653
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3e-27 Score=207.81 Aligned_cols=224 Identities=13% Similarity=0.118 Sum_probs=123.8
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC-------HHHHHH
Q 010276 216 LHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI-------MTYMDE 288 (514)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~ 288 (514)
..++.+|.++...|++++|+..|+++++.+ .++.++..+|.++...|++++|+..++++++.+|.+ +.++..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 344455555555666666666666655555 555555555666666666666666665555555544 445555
Q ss_pred HHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHH
Q 010276 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEA 368 (514)
Q Consensus 289 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (514)
+|.++...|++++|+..+++++...|. +.++...|++++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-----------------------------------------~~~~~~~~~~~~ 123 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-----------------------------------------ADILTKLRNAEK 123 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-----------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-----------------------------------------hHHHHHHhHHHH
Confidence 555555555555555555555554443 233444444555
Q ss_pred HHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 010276 369 AVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRL 447 (514)
Q Consensus 369 A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~ 447 (514)
|+..+++++...|.. .++..+|.++...|++++|+..+++++...|+++.++..+|.++... |++++|+..++++++.
T Consensus 124 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 124 ELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL-MSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHh
Confidence 555555555555444 44555555555555555555555555555555555555555555555 5555555555555555
Q ss_pred CCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhC
Q 010276 448 EPGYLGAALALAELHVIEGRNGDAVSLLERYLKDW 482 (514)
Q Consensus 448 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 482 (514)
+|+++.++..+|.++...|++++|+..++++++..
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 55555555555555555555555555555555555
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.9e-27 Score=205.96 Aligned_cols=226 Identities=12% Similarity=0.052 Sum_probs=154.2
Q ss_pred CCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----
Q 010276 173 FFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---- 248 (514)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---- 248 (514)
.....+..++..+...++..++........... .....++.+|.++...|++++|+..++++++..|++
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 75 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY 75 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch
Confidence 346678889999999999999999988887543 334556778999999999999999999999988866
Q ss_pred ---HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHH
Q 010276 249 ---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325 (514)
Q Consensus 249 ---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 325 (514)
+.++..+|.++...|++++|+..|+++++.+|. +.++...|++++|+..+++++...|.++.++..+|.
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 147 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGK 147 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 789999999999999999999999999999987 345666666666666666666655555555555555
Q ss_pred HHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHH
Q 010276 326 LWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEAL 403 (514)
Q Consensus 326 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~ 403 (514)
++.. |++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|++ .++..+|.++...|++++|+
T Consensus 148 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4444 555555555555555555544444455555555555555555554444444443 34444444444444444444
Q ss_pred HHHHHHHhhC
Q 010276 404 YAAREAMKAM 413 (514)
Q Consensus 404 ~~~~~~~~~~ 413 (514)
..++++++..
T Consensus 228 ~~~~~a~~~~ 237 (258)
T 3uq3_A 228 ETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 4444444444
No 38
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.96 E-value=1e-27 Score=225.81 Aligned_cols=288 Identities=15% Similarity=0.149 Sum_probs=251.8
Q ss_pred hHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHhCChHHHHHHHHHHHhh------CCCCH
Q 010276 214 RWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI----HILLEMAKVDAIIGKNDEAILNFEKVRSI------DPYIM 283 (514)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~ 283 (514)
....++..|..+...|++++|+..|++++...|+++ .++..+|.++...|++++|+.++++++.. .|...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344567789999999999999999999999999884 67889999999999999999999999876 34447
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC------hHHHHHHHHHHhh-cC--------------------hhHHH
Q 010276 284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR------PEVFVALSVLWER-KD--------------------ERGAL 336 (514)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~-~~--------------------~~~A~ 336 (514)
.++..+|.++...|++++|+..+++++...|.. ..++..+|.++.. |+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 789999999999999999999999999876643 4478888988888 88 99999
Q ss_pred HHHHHHHHh------cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhcCCHHHHH
Q 010276 337 SYAEKSIRI------DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEAL 403 (514)
Q Consensus 337 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~ 403 (514)
..+++++.. .|....++..+|.++...|++++|+..++++++..|.. .++..+|.++...|++++|+
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999999887 34445678999999999999999999999999875543 26899999999999999999
Q ss_pred HHHHHHHhhCCCC------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCChhHH
Q 010276 404 YAAREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDA 471 (514)
Q Consensus 404 ~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A 471 (514)
..+++++...|.. ..++..+|.++... |++++|+.+++++++..+.. ..++..+|.++...|++++|
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL-QDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999887765 77889999999998 99999999999999875443 56889999999999999999
Q ss_pred HHHHHHHHhhCCCc-------hHHHHHHHHHHHhccHH
Q 010276 472 VSLLERYLKDWADD-------SLHVKLAQVFAATNMLQ 502 (514)
Q Consensus 472 ~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~ 502 (514)
+.+++++++..+.. .++..+|.++...|+..
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99999999875321 48889999999999763
No 39
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.95 E-value=8.9e-27 Score=219.42 Aligned_cols=298 Identities=16% Similarity=0.160 Sum_probs=251.5
Q ss_pred CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHh
Q 010276 138 ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLH 217 (514)
Q Consensus 138 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (514)
......++.+|.++...|++++|+..|+++++..|.+.......
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------------------------------------ 49 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAI------------------------------------ 49 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHH------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHH------------------------------------
Confidence 34667788999999999999999999999999999876543221
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC------HHH
Q 010276 218 RYVEAQCCIASNDYKGGLELFAELLQR------FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI------MTY 285 (514)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~ 285 (514)
+..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.+++++++..|.. ..+
T Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 129 (406)
T 3sf4_A 50 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHH
Confidence 234589999999999999999998875 33447789999999999999999999999999876643 458
Q ss_pred HHHHHHHHHHhCC--------------------hhHHHHHHHHHhhc------CCCChHHHHHHHHHHhh-cChhHHHHH
Q 010276 286 MDEYAMLLKVKCD--------------------YSKLSKLVHDLLSI------DPSRPEVFVALSVLWER-KDERGALSY 338 (514)
Q Consensus 286 ~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~-~~~~~A~~~ 338 (514)
+..+|.++...|+ +++|+..+.+++.. .|....++..+|.++.. |++++|+.+
T Consensus 130 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 209 (406)
T 3sf4_A 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 209 (406)
T ss_dssp HHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred HHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 8999999999999 99999999998875 23335678888988887 999999999
Q ss_pred HHHHHHhcccCch------hHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhcCCHHHHHHH
Q 010276 339 AEKSIRIDERHIP------GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYA 405 (514)
Q Consensus 339 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~ 405 (514)
+++++...|.... ++..+|.++...|++++|+..+++++...|.. .++..+|.++...|++++|+..
T Consensus 210 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 289 (406)
T 3sf4_A 210 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 289 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 9999998777655 88999999999999999999999999875542 4688999999999999999999
Q ss_pred HHHHHhhCCCC------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC------CChHHHHHHHHHHHHcCChhHHH
Q 010276 406 AREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEP------GYLGAALALAELHVIEGRNGDAV 472 (514)
Q Consensus 406 ~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~g~~~~A~ 472 (514)
+++++...+.. ..++..+|.++... |++++|+.++++++++.+ ....++..++.++...|+...+.
T Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 290 HLKHLAIAQELNDRIGEGRACWSLGNAYTAL-GNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 99999876543 67889999999999 999999999999998733 33568889999999999875433
No 40
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.95 E-value=3.5e-26 Score=215.71 Aligned_cols=273 Identities=14% Similarity=0.139 Sum_probs=227.3
Q ss_pred chhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHhCChHHHHHHHHHHHhh------CCC
Q 010276 212 SSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI----HILLEMAKVDAIIGKNDEAILNFEKVRSI------DPY 281 (514)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~ 281 (514)
+.....++..|..+...|++++|+..|+++++..|+++ .++..+|.++...|++++|+.+++++++. .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 34455566789999999999999999999999999886 57889999999999999999999999987 466
Q ss_pred CHHHHHHHHHHHHHhCChhHHHHHHHHHhhc------CCCChHHHHHHHHHHhh-cC-----------------hhHHHH
Q 010276 282 IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSI------DPSRPEVFVALSVLWER-KD-----------------ERGALS 337 (514)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~-~~-----------------~~~A~~ 337 (514)
...++..+|.++...|++++|+..+++++.. .|....++..+|.++.. |+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 6788999999999999999999999999887 44456678888888877 88 888888
Q ss_pred HHHHHHHhcc------cCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhcCCHHHHHH
Q 010276 338 YAEKSIRIDE------RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALY 404 (514)
Q Consensus 338 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~ 404 (514)
++++++...+ ....++..+|.++...|++++|+..++++++..|.. .++..+|.++...|++++|+.
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 8888877643 334578888999999999999999999988876543 267888999999999999999
Q ss_pred HHHHHHhhCCCC------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCChhHHH
Q 010276 405 AAREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAV 472 (514)
Q Consensus 405 ~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~ 472 (514)
.+++++...|.. ..++..+|.++... |++++|+.++++++...+.. ..++..+|.++...|++++|+
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 363 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLL-HEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERAL 363 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 999988877643 67788889998888 99999999999888874432 347888899999999999999
Q ss_pred HHHHHHHhhCCCc
Q 010276 473 SLLERYLKDWADD 485 (514)
Q Consensus 473 ~~~~~~~~~~~~~ 485 (514)
.++++++++.+..
T Consensus 364 ~~~~~al~~~~~~ 376 (411)
T 4a1s_A 364 KYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHCCHH
T ss_pred HHHHHHHHHHhhc
Confidence 9999988887654
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.95 E-value=2.1e-26 Score=218.13 Aligned_cols=343 Identities=13% Similarity=0.110 Sum_probs=258.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCCh---hhHHHHHHHHHhcCCCCHHHHHHHHHhccCc
Q 010276 112 YKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHN---RGAVACYKECLRHCPFFIEAITALAELGATP 188 (514)
Q Consensus 112 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 188 (514)
..+|..+...|++++|+..++++.. +.++.+++.+|.+|...|++ ++|+..|+++++. ++.++..+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~-~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~L------- 75 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAE-LGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARL------- 75 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HTCCTGGGTCC-------------------------------CHHHH-------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHH-------
Confidence 4578999999999999999998632 35677889999999999998 9999999999876 44455544
Q ss_pred ccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHh-----cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC
Q 010276 189 KDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIAS-----NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG 263 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~ 263 (514)
|.++... +++++|+.+|+++++.. ++.+++.+|.+|...+
T Consensus 76 ---------------------------------g~~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~ 120 (452)
T 3e4b_A 76 ---------------------------------GRLLAAKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYP 120 (452)
T ss_dssp ---------------------------------HHHHHTC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCG
T ss_pred ---------------------------------HHHHHhCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCC
Confidence 4433333 37899999999998854 4558999999999887
Q ss_pred ChHHH---HHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhh-cCCCChHHHHHHHHHHhh-c---ChhHH
Q 010276 264 KNDEA---ILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS-IDPSRPEVFVALSVLWER-K---DERGA 335 (514)
Q Consensus 264 ~~~~A---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~-~---~~~~A 335 (514)
..+++ .+.+.++.. +.++.+++.+|.++...+.++++......... ..+.++.+++.+|.++.. | ++++|
T Consensus 121 ~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A 198 (452)
T 3e4b_A 121 HSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAEL 198 (452)
T ss_dssp GGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHH
Confidence 65544 444444443 34578999999999999977665555333322 123445599999998888 7 88999
Q ss_pred HHHHHHHHHhcccCchhHHHHHHHHHhc----CChHHHHHHHHHhHhhcCCh-HHHHHHHHH-H--HhcCCHHHHHHHHH
Q 010276 336 LSYAEKSIRIDERHIPGYIMKGNLLLSM----KRPEAAVIAFRGAQELRPDL-RSYQGLVHS-Y--LQFSKVKEALYAAR 407 (514)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~-~--~~~~~~~~A~~~~~ 407 (514)
+.+|+++.+..|.....++.+|.+|... +++++|+..|+++. |.+ .+++.+|.+ + ...+++++|+.+|+
T Consensus 199 ~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 199 LKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 9999999999999888889999999766 79999999999997 665 899999998 4 57899999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCChhHHHHHHHHH
Q 010276 408 EAMKAMPQSAKALKLVGDVHASNAS-----GREKAKKFYESALRLEPGYLGAALALAELHVI----EGRNGDAVSLLERY 478 (514)
Q Consensus 408 ~~~~~~p~~~~~~~~l~~~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~ 478 (514)
++.+. .++.+++.+|.+|.. | ++++|+.+|+++. |+++.+.+.||.+|.. ..++++|+.+|+++
T Consensus 276 ~Aa~~--g~~~A~~~Lg~~y~~--G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 348 (452)
T 3e4b_A 276 NGRAA--DQPRAELLLGKLYYE--GKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTA 348 (452)
T ss_dssp HHHHT--TCHHHHHHHHHHHHH--CSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH
T ss_pred HHHHC--CCHHHHHHHHHHHHc--CCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 99864 589999999999984 6 9999999999998 8999999999999887 44999999999999
Q ss_pred HhhCCCchHHHHHHHHHHH----hccHHHHHHHHHHHhc
Q 010276 479 LKDWADDSLHVKLAQVFAA----TNMLQEALSHYEAALR 513 (514)
Q Consensus 479 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~ 513 (514)
.+.. +..+.+.+|.+|.. ..++.+|..+|+++.+
T Consensus 349 a~~g-~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 349 ARNG-QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HTTT-CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HhhC-hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 8753 34689999999985 4689999999999865
No 42
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.95 E-value=1.3e-26 Score=218.62 Aligned_cols=267 Identities=15% Similarity=0.088 Sum_probs=237.2
Q ss_pred CcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhCChhHHHHHHHHHhhc------CCCC
Q 010276 247 NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM----TYMDEYAMLLKVKCDYSKLSKLVHDLLSI------DPSR 316 (514)
Q Consensus 247 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~ 316 (514)
.....+..+|..+...|++++|+..|+++++..|.++ .++..+|.++...|++++|+..+++++.. .|..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3456778899999999999999999999999999986 57899999999999999999999999887 4566
Q ss_pred hHHHHHHHHHHhh-cChhHHHHHHHHHHHh------cccCchhHHHHHHHHHhcCC-----------------hHHHHHH
Q 010276 317 PEVFVALSVLWER-KDERGALSYAEKSIRI------DERHIPGYIMKGNLLLSMKR-----------------PEAAVIA 372 (514)
Q Consensus 317 ~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-----------------~~~A~~~ 372 (514)
..++..+|.++.. |++++|+.++++++.. .|....++..+|.++...|+ +++|+..
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 7889999998888 9999999999999988 55667789999999999999 9999999
Q ss_pred HHHhHhhcCC------h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHhcCCChHHHHH
Q 010276 373 FRGAQELRPD------L-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSA------KALKLVGDVHASNASGREKAKK 439 (514)
Q Consensus 373 ~~~~~~~~~~------~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~~~~~~~A~~ 439 (514)
+++++++.+. . .++..+|.++...|++++|+.++++++...|... .++..+|.++... |++++|+.
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~ 284 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFL-GQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHC-cCHHHHHH
Confidence 9999876422 1 4789999999999999999999999999876543 3889999999998 99999999
Q ss_pred HHHHHHhhCCCC------hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-------hHHHHHHHHHHHhccHHHHHH
Q 010276 440 FYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLKDWADD-------SLHVKLAQVFAATNMLQEALS 506 (514)
Q Consensus 440 ~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~ 506 (514)
.|++++...|.. ..++..+|.++...|++++|+.++++++...+.. .++..+|.+|...|++++|..
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999999987643 5688999999999999999999999999986532 488999999999999999999
Q ss_pred HHHHHhcC
Q 010276 507 HYEAALRL 514 (514)
Q Consensus 507 ~~~~al~l 514 (514)
+|++++++
T Consensus 365 ~~~~al~~ 372 (411)
T 4a1s_A 365 YAEQHLQL 372 (411)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999863
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.94 E-value=1.2e-26 Score=206.23 Aligned_cols=246 Identities=11% Similarity=0.004 Sum_probs=154.5
Q ss_pred HHHhcCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChh
Q 010276 225 CIASNDYKGGLELFAELLQRF----PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300 (514)
Q Consensus 225 ~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (514)
....|++++|+..++++++.. |.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 344578888888888888763 4457788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhh
Q 010276 301 KLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL 379 (514)
Q Consensus 301 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 379 (514)
+|+..+++++...|.++.++..+|.++.. |++++|+..++++++..|+++......+.. ...|++++|+..+++++..
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhc
Confidence 88877777777777777777666666665 666666666666666666655444333322 4446666666666666665
Q ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHH
Q 010276 380 RPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ----SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAA 455 (514)
Q Consensus 380 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 455 (514)
.|+......++..+...++.++|+..+++++...|. ++.++..+|.++... |++++|+..|++++..+|++...+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~ 252 (275)
T 1xnf_A 174 SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL-GDLDSATALFKLAVANNVHNFVEH 252 (275)
T ss_dssp SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred CCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCchhHHHH
Confidence 555533334555555555555555555555544432 234455555555554 555555555555555555442222
Q ss_pred HHHHHHHHHcCChhHHHHHH
Q 010276 456 LALAELHVIEGRNGDAVSLL 475 (514)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~ 475 (514)
+.++...|++++|++.+
T Consensus 253 ---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 253 ---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHhhHHHH
Confidence 34444445555554444
No 44
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.94 E-value=7.4e-26 Score=207.32 Aligned_cols=265 Identities=15% Similarity=0.144 Sum_probs=151.4
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhCChHHHHHHHHHHHhh------CCCCHHH
Q 010276 216 LHRYVEAQCCIASNDYKGGLELFAELLQRFPNN----IHILLEMAKVDAIIGKNDEAILNFEKVRSI------DPYIMTY 285 (514)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~ 285 (514)
..++..|..+...|++++|+..|+++++..|++ ..++..+|.++...|++++|+..+++++.. .|....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 345667888889999999999999999888887 367778889999999999999998888776 3344567
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHhhcCCCCh------HHHHHHHHHHhh-cC--------------------hhHHHHH
Q 010276 286 MDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP------EVFVALSVLWER-KD--------------------ERGALSY 338 (514)
Q Consensus 286 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~-~~--------------------~~~A~~~ 338 (514)
+..+|.++...|++++|+..+++++...|... .++..+|.++.. |+ +++|+..
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 77777788888888888877777776544322 245555555554 55 5555555
Q ss_pred HHHHHHhc------ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhcCCHHHHHHH
Q 010276 339 AEKSIRID------ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYA 405 (514)
Q Consensus 339 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~ 405 (514)
+++++... |....++..+|.++...|++++|+..++++++..|.. .++..+|.++...|++++|+..
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55554431 1222344455555555555555555555554443221 1344444444444444444444
Q ss_pred HHHHHhhCCCC------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCChhHHHH
Q 010276 406 AREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVS 473 (514)
Q Consensus 406 ~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~ 473 (514)
+++++...|.. ..++..+|.++... |++++|+.+++++++..|.. ..++..+|.++...|++++|..
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLL-QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 44444433322 33344444444444 44444444444444432211 1233344444444444444444
Q ss_pred HHHHHHhh
Q 010276 474 LLERYLKD 481 (514)
Q Consensus 474 ~~~~~~~~ 481 (514)
++++++++
T Consensus 325 ~~~~a~~~ 332 (338)
T 3ro2_A 325 FAEKHLEI 332 (338)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 44444443
No 45
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.94 E-value=9.7e-26 Score=206.51 Aligned_cols=265 Identities=14% Similarity=0.117 Sum_probs=232.4
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhCChhHHHHHHHHHhhc------CCCChH
Q 010276 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM----TYMDEYAMLLKVKCDYSKLSKLVHDLLSI------DPSRPE 318 (514)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~ 318 (514)
...+...|..+...|++++|+..|+++++..|.++ .++..+|.++...|++++|+..+++++.. .|....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 45677889999999999999999999999999984 67889999999999999999999998876 344467
Q ss_pred HHHHHHHHHhh-cChhHHHHHHHHHHHhcccCch------hHHHHHHHHHhcCC--------------------hHHHHH
Q 010276 319 VFVALSVLWER-KDERGALSYAEKSIRIDERHIP------GYIMKGNLLLSMKR--------------------PEAAVI 371 (514)
Q Consensus 319 ~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~--------------------~~~A~~ 371 (514)
++..+|.++.. |++++|+..+++++...|.... ++..+|.++...|+ +++|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 78889998888 9999999999999998776543 78899999999999 999999
Q ss_pred HHHHhHhhcC---Ch----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCChHHHH
Q 010276 372 AFRGAQELRP---DL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASGREKAK 438 (514)
Q Consensus 372 ~~~~~~~~~~---~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~ 438 (514)
.+++++...+ +. .++..+|.++...|++++|+..+++++...|.. ..++..+|.++... |++++|+
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~ 243 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL-GEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-TCHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 9999887632 11 468899999999999999999999999876543 34889999999999 9999999
Q ss_pred HHHHHHHhhCCCC------hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-------hHHHHHHHHHHHhccHHHHH
Q 010276 439 KFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLKDWADD-------SLHVKLAQVFAATNMLQEAL 505 (514)
Q Consensus 439 ~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~ 505 (514)
..+++++...|.. ..++..+|.++...|++++|+.+++++++..+.. .++..+|.++...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 9999999876554 5688999999999999999999999999886532 38889999999999999999
Q ss_pred HHHHHHhcC
Q 010276 506 SHYEAALRL 514 (514)
Q Consensus 506 ~~~~~al~l 514 (514)
.+|++++++
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999999864
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.94 E-value=1.7e-25 Score=198.65 Aligned_cols=247 Identities=11% Similarity=0.026 Sum_probs=216.1
Q ss_pred HHHHhCChHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cCh
Q 010276 258 VDAIIGKNDEAILNFEKVRSID----PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDE 332 (514)
Q Consensus 258 ~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 332 (514)
.....|++++|+..|+++++.. |.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.. |++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 3445688999999999999973 45678999999999999999999999999999999999999999999888 999
Q ss_pred hHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 010276 333 RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKA 412 (514)
Q Consensus 333 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 412 (514)
++|+.++++++..+|.++.++..+|.++...|++++|+..|+++++..|++.............|++++|+..+++++..
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999854444444557779999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHH
Q 010276 413 MPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY----LGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLH 488 (514)
Q Consensus 413 ~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 488 (514)
.|++...+. ++.++... ++.++|+..+++++...|.. +.++..+|.++...|++++|+..|+++++..|++..
T Consensus 174 ~~~~~~~~~-~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 250 (275)
T 1xnf_A 174 SDKEQWGWN-IVEFYLGN-ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV- 250 (275)
T ss_dssp SCCCSTHHH-HHHHHTTS-SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH-
T ss_pred CCcchHHHH-HHHHHHHh-cCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH-
Confidence 998866655 66677776 88899999999998877643 689999999999999999999999999999997642
Q ss_pred HHHHHHHHHhccHHHHHHHH
Q 010276 489 VKLAQVFAATNMLQEALSHY 508 (514)
Q Consensus 489 ~~l~~~~~~~g~~~~A~~~~ 508 (514)
..+.++..+|++++|++.|
T Consensus 251 -~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 -EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -HHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHhhHHHH
Confidence 3377888999999999886
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.94 E-value=4.7e-25 Score=191.93 Aligned_cols=213 Identities=18% Similarity=0.146 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHh
Q 010276 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE 328 (514)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (514)
+..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555444
Q ss_pred h-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHH
Q 010276 329 R-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAA 406 (514)
Q Consensus 329 ~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~ 406 (514)
. |++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|++ .++..+|.++...|++++|+..+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4 555555555555555555555555555555555555555555555555555544 44555555555555555555555
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 010276 407 REAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELH 462 (514)
Q Consensus 407 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 462 (514)
++++...|+++.++..+|.++... |++++|+..|+++++.+|+++.++..++.+.
T Consensus 183 ~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 183 AAVTEQDPGHADAFYNAGVTYAYK-ENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHT-TCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHhCcccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 555555555555555555555555 5555555555555555555555555544443
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.94 E-value=1.1e-24 Score=189.63 Aligned_cols=216 Identities=13% Similarity=0.090 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHH
Q 010276 283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLL 361 (514)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (514)
+..+..+|.++...|++++|+..+++++...|.++.++..+|.++.. |++++|+..+++++...|.++.++..+|.++.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999998888 99999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHH
Q 010276 362 SMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKF 440 (514)
Q Consensus 362 ~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~ 440 (514)
..|++++|+..++++++..|++ .++..+|.++...|++++|+..+++++...|+++.++..+|.++... |++++|+..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~ 181 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANE-GMLDEALSQ 181 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 9999999999999999999987 88999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhc
Q 010276 441 YESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATN 499 (514)
Q Consensus 441 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g 499 (514)
++++++..|+++.++..+|.++...|++++|+..++++++..|++. ++..++.+....|
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999985 7777776655544
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.93 E-value=4.8e-23 Score=182.46 Aligned_cols=229 Identities=17% Similarity=0.100 Sum_probs=182.5
Q ss_pred CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCChhHHHHHHHHHhhcCCCChHHH
Q 010276 245 FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV----KCDYSKLSKLVHDLLSIDPSRPEVF 320 (514)
Q Consensus 245 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 320 (514)
+|+++.+++.+|.++...|++++|+.+|+++++ |.++.++..+|.++.. .+++++|+..|+++++.. ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 466777778888888888888888888888777 6667777888888887 888888888888877764 67777
Q ss_pred HHHHHHHhh-----cChhHHHHHHHHHHHhcccCchhHHHHHHHHHh----cCChHHHHHHHHHhHhhcCChHHHHHHHH
Q 010276 321 VALSVLWER-----KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS----MKRPEAAVIAFRGAQELRPDLRSYQGLVH 391 (514)
Q Consensus 321 ~~l~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~ 391 (514)
..+|.++.. +++++|+.+|+++++.+ ++.++..+|.++.. .+++++|+..|+++++.. +..++..+|.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~ 154 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-cHHHHHHHHH
Confidence 778777663 77788888888887763 67788888888888 888888888888888765 3467888888
Q ss_pred HHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 010276 392 SYLQ----FSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS----NASGREKAKKFYESALRLEPGYLGAALALAELHV 463 (514)
Q Consensus 392 ~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 463 (514)
++.. .+++++|+.+++++++. +++.++..+|.++.. . +++++|+.+|+++++.+| +.++..+|.++.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~ 229 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGAT-KNFKEALARYSKACELEN--GGGCFNLGAMQY 229 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSC-CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 8888 88888888888888876 457888888888888 7 888888888888888765 778888888888
Q ss_pred H----cCChhHHHHHHHHHHhhCCCc
Q 010276 464 I----EGRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 464 ~----~g~~~~A~~~~~~~~~~~~~~ 485 (514)
. .+++++|+.+|+++++..|++
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 8 888888999998888887764
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.93 E-value=9.6e-24 Score=184.67 Aligned_cols=204 Identities=16% Similarity=0.096 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHh
Q 010276 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE 328 (514)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (514)
+.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 45555666666666666666666666666655555555555555555555555555555555555555544444444444
Q ss_pred h-cChhHHHHHHHHHHH--hcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHH
Q 010276 329 R-KDERGALSYAEKSIR--IDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALY 404 (514)
Q Consensus 329 ~-~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~ 404 (514)
. |++++|+.++++++. ..|.++.++..+|.++...|++++|+..++++++..|.+ .++..+|.++...|++++|+.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 3 444444444444444 334444444444444444444444444444444444443 344444444444444444444
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChH
Q 010276 405 AAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG 453 (514)
Q Consensus 405 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 453 (514)
.+++++...|++...+..++.++... |++++|...++++++..|+++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 197 YYDLFAQGGGQNARSLLLGIRLAKVF-EDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHCCCCHH
Confidence 44444444444444444444444444 4444444444444444444443
No 51
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.93 E-value=1.5e-23 Score=188.78 Aligned_cols=256 Identities=11% Similarity=0.099 Sum_probs=215.4
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCH------
Q 010276 158 RGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDY------ 231 (514)
Q Consensus 158 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------ 231 (514)
++|+..|++++..+|.++.+|..++...... +..+...|++
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~---------------------------------~~~l~~~g~~~~~~~~ 79 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQS---------------------------------SKLLAEKGDMNNAKLF 79 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------------------HHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---------------------------------chhhhhccchhhcccc
Confidence 7899999999999999999998885443110 1112244665
Q ss_pred -HHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHhCChhHHHHHHHH
Q 010276 232 -KGGLELFAELLQ-RFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT-YMDEYAMLLKVKCDYSKLSKLVHD 308 (514)
Q Consensus 232 -~~A~~~~~~~~~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~ 308 (514)
++|+..|++++. ..|++..+|..+|.++...|++++|...|+++++.+|.++. +|..++.++...|++++|...|++
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999999 69999999999999999999999999999999999999987 999999999999999999999999
Q ss_pred HhhcCCCChHHHHHHHHHHh--hcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhh---cCC-
Q 010276 309 LLSIDPSRPEVFVALSVLWE--RKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL---RPD- 382 (514)
Q Consensus 309 ~~~~~~~~~~~~~~l~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~- 382 (514)
+++..|.+..++...+.+.. .|++++|+..|+++++.+|+++.+|..+|.++...|++++|...|++++.. .|+
T Consensus 160 a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~ 239 (308)
T 2ond_A 160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH
Confidence 99999999888887776643 399999999999999999999999999999999999999999999999995 444
Q ss_pred h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHH
Q 010276 383 L-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALA 459 (514)
Q Consensus 383 ~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 459 (514)
. ..|..++..+...|++++|...++++++..|+++..... +.+ . .++ +.+.++|.++.++..||
T Consensus 240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~~-~~~-~---~r~--------~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 240 SGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKET-ALL-V---DRY--------KFMDLYPCSASELKALG 304 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHH-HHH-H---TTT--------CBTTBCSSCHHHHHTTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccchH-HHH-H---HHH--------HhcccCCCCHHHHHhcC
Confidence 3 678889999999999999999999999999985533211 222 1 111 45668899888887665
No 52
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.93 E-value=3.6e-24 Score=199.60 Aligned_cols=299 Identities=16% Similarity=0.127 Sum_probs=234.3
Q ss_pred chhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CcHHHH--HHH--HHHHHHhCChHHHH-----------HHHH
Q 010276 212 SSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFP---NNIHIL--LEM--AKVDAIIGKNDEAI-----------LNFE 273 (514)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~--~~l--a~~~~~~~~~~~A~-----------~~~~ 273 (514)
++.....+.........+++++|..+++++.+..+ .+..+. +.+ .+.....++.+.+. +.++
T Consensus 9 ~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~ 88 (383)
T 3ulq_A 9 SSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLL 88 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHH
Confidence 34445556667778899999999999999876432 344433 222 22223334444444 5555
Q ss_pred HHHhhCCCCHH------HHHHHHHHHHHhCChhHHHHHHHHHhhc---CCC---ChHHHHHHHHHHhh-cChhHHHHHHH
Q 010276 274 KVRSIDPYIMT------YMDEYAMLLKVKCDYSKLSKLVHDLLSI---DPS---RPEVFVALSVLWER-KDERGALSYAE 340 (514)
Q Consensus 274 ~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~l~~~~~~-~~~~~A~~~~~ 340 (514)
++-. .|.... .++..|.++...|++++|+..+++++.. .++ .+.++..+|.++.. |++++|+.+++
T Consensus 89 ~i~~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ 167 (383)
T 3ulq_A 89 EIDK-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYAR 167 (383)
T ss_dssp HHHH-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHh-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5433 333323 3445899999999999999999999987 233 35788999998888 99999999999
Q ss_pred HHHHhcccCc-------hhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhcCCHHHHHHHH
Q 010276 341 KSIRIDERHI-------PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAA 406 (514)
Q Consensus 341 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~ 406 (514)
+++++.+... .++..+|.++...|++++|+..|+++++..|.. .++.++|.+|...|++++|+.++
T Consensus 168 ~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 247 (383)
T 3ulq_A 168 QAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF 247 (383)
T ss_dssp HHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999865543 478899999999999999999999999885432 37899999999999999999999
Q ss_pred HHHHh-----hC-CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC-----CCChHHHHHHHHHHHHcCC---hhHHH
Q 010276 407 REAMK-----AM-PQSAKALKLVGDVHASNASGREKAKKFYESALRLE-----PGYLGAALALAELHVIEGR---NGDAV 472 (514)
Q Consensus 407 ~~~~~-----~~-p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~~~~g~---~~~A~ 472 (514)
++++. .+ |..+.++..+|.++... |++++|+.++++++++. |.....+..++.++...|+ +++|+
T Consensus 248 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al 326 (383)
T 3ulq_A 248 KRAIAVFEESNILPSLPQAYFLITQIHYKL-GKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFF 326 (383)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHH
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 99999 46 77889999999999999 99999999999999873 3333446779999999999 78888
Q ss_pred HHHHHHHhhCCC-chHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 473 SLLERYLKDWAD-DSLHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 473 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
..+++. ...|. ..++..+|.+|...|++++|..+|+++++
T Consensus 327 ~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 327 DFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888776 22222 24888999999999999999999999986
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.93 E-value=2.1e-23 Score=182.45 Aligned_cols=208 Identities=16% Similarity=0.109 Sum_probs=198.5
Q ss_pred hCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHH
Q 010276 278 IDPYI-MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIM 355 (514)
Q Consensus 278 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~ 355 (514)
.+|.. +.++..+|.++...|++++|+..+++++...|.++.++..+|.++.. |++++|+..++++++..|.++.++..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 45555 78899999999999999999999999999999999999999998888 99999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHhHh--hcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 010276 356 KGNLLLSMKRPEAAVIAFRGAQE--LRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS 432 (514)
Q Consensus 356 ~~~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 432 (514)
+|.++...|++++|+..+++++. ..|.. .++..+|.++...|++++|+..+++++...|.++.++..+|.++... |
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-g 189 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE-R 189 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-C
Confidence 99999999999999999999999 77776 78999999999999999999999999999999999999999999998 9
Q ss_pred ChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276 433 GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS 486 (514)
Q Consensus 433 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 486 (514)
++++|+..++++++..|.++.++..++.++...|++++|...++++++..|++.
T Consensus 190 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 999999999999999999999999999999999999999999999999999875
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=7.3e-24 Score=175.64 Aligned_cols=170 Identities=16% Similarity=0.216 Sum_probs=104.4
Q ss_pred CcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHH
Q 010276 247 NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVL 326 (514)
Q Consensus 247 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 326 (514)
+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 34566666666666666666666666666666666666666666666666666666666666666666666666665555
Q ss_pred Hhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHH
Q 010276 327 WER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALY 404 (514)
Q Consensus 327 ~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~ 404 (514)
+.. ++++.|...+.+++...|.++.++..+|.++...|++++|+..|+++++.+|++ .++..+|.++...|++++|+.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 554 555566666666666666555555555666555555555555555555555555 455555555555555555555
Q ss_pred HHHHHHhhCCCC
Q 010276 405 AAREAMKAMPQS 416 (514)
Q Consensus 405 ~~~~~~~~~p~~ 416 (514)
.|+++++.+|++
T Consensus 163 ~~~~al~~~p~~ 174 (184)
T 3vtx_A 163 YFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHTTHHH
T ss_pred HHHHHHhCCccC
Confidence 555555555543
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=7.3e-24 Score=175.62 Aligned_cols=170 Identities=18% Similarity=0.234 Sum_probs=122.5
Q ss_pred CChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHH
Q 010276 315 SRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHS 392 (514)
Q Consensus 315 ~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~ 392 (514)
+++.+++.+|.++.. |++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|+. .++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 455666667766666 777777777777777777777777777777777777777777777777777766 566677777
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHH
Q 010276 393 YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAV 472 (514)
Q Consensus 393 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 472 (514)
+...++++.|...+.+++...|+++.++..+|.++... |++++|+..|+++++.+|+++.++..+|.++..+|++++|+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSM-GEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHh-CCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 77777777777777777777777777777777777776 77777777777777777777777777777777777777777
Q ss_pred HHHHHHHhhCCCc
Q 010276 473 SLLERYLKDWADD 485 (514)
Q Consensus 473 ~~~~~~~~~~~~~ 485 (514)
..|+++++.+|++
T Consensus 162 ~~~~~al~~~p~~ 174 (184)
T 3vtx_A 162 KYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHTTHHH
T ss_pred HHHHHHHhCCccC
Confidence 7777777776654
No 56
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.93 E-value=8.7e-22 Score=197.77 Aligned_cols=416 Identities=10% Similarity=-0.001 Sum_probs=257.9
Q ss_pred HHHHHHhhHhhhhhHHHHHHHHHHHHhhccc----CchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHh
Q 010276 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKI----VPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120 (514)
Q Consensus 45 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 120 (514)
---...+.|...|++.+|++.|++++ ..|. +......+.++..+. +.....+.... .+ ....-.+|.++..
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~k--Ld-~~d~~eIA~Iai~ 1061 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINR--LD-NYDAPDIANIAIS 1061 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHH--hh-hccHHHHHHHHHh
Confidence 34456677779999999999999999 4454 333333355555544 22221111111 11 1112347888999
Q ss_pred cCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCC
Q 010276 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPN 200 (514)
Q Consensus 121 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 200 (514)
.|.+++|..++++... .. ..+...+...|++++|++.++++ +.+.+|..++......+++.++.+...+
T Consensus 1062 lglyEEAf~IYkKa~~---~~---~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFDV---NT---SAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred CCCHHHHHHHHHHcCC---HH---HHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 9999999999998631 11 11233344778888888888865 5577787776666555555555544433
Q ss_pred cCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCC
Q 010276 201 RSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP 280 (514)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 280 (514)
. +++..+...|.++.+.|++++|+++|..+.+..++. .+...+|.+|.+.+++++ ++.|. ..
T Consensus 1131 A-----------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~rlee-le~fI-----~~ 1192 (1630)
T 1xi4_A 1131 A-----------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTNRLAE-LEEFI-----NG 1192 (1630)
T ss_pred c-----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhcCHHH-HHHHH-----hC
Confidence 1 222233344666667777777777777666655332 222346666666666663 33331 12
Q ss_pred CCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHH
Q 010276 281 YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNL 359 (514)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 359 (514)
.+...+..+|..+...|++++|..+|.++ ..|..++.++.. |++++|++.++++ .++.+|...+.+
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFA 1259 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHH
Confidence 23345556777777777777777777664 356666666666 6777777777666 345666666777
Q ss_pred HHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-CCChHHHH
Q 010276 360 LLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN-ASGREKAK 438 (514)
Q Consensus 360 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~~~~~~A~ 438 (514)
+...|+|..|..+... +..+|+ .+..++..|...|.+++|+.+++.++.++|.+...+..+|.++.+. .++..+++
T Consensus 1260 cve~~Ef~LA~~cgl~-Iiv~~d--eLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLH-IVVHAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred HhhhhHHHHHHHHHHh-hhcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 7777777777666553 322333 3446777788888888888888888888888777887777777653 14556777
Q ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHcCChhHHHHHHHHH-------------HhhCCCchHHHHHHHHHHHhc-
Q 010276 439 KFYESALRLEP-----GYLGAALALAELHVIEGRNGDAVSLLERY-------------LKDWADDSLHVKLAQVFAATN- 499 (514)
Q Consensus 439 ~~~~~a~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~g- 499 (514)
+.|...+.+.| ++...|..+..+|.+-|+++.|+..+-.. +....+.++++.....|...+
T Consensus 1337 k~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P 1416 (1630)
T 1xi4_A 1337 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 1416 (1630)
T ss_pred HHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhCh
Confidence 77777776665 56677888888888888888887433332 222223357777777777666
Q ss_pred --------------cHHHHHHHHHH
Q 010276 500 --------------MLQEALSHYEA 510 (514)
Q Consensus 500 --------------~~~~A~~~~~~ 510 (514)
++..+...|++
T Consensus 1417 ~~lndLl~~l~~rlD~~R~V~l~~~ 1441 (1630)
T 1xi4_A 1417 LLLNDLLMVLSPRLDHTRAVNYFSK 1441 (1630)
T ss_pred HHHHHHHHHhhhcCChHHHHHHHHH
Confidence 66666666553
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.93 E-value=5.7e-23 Score=176.37 Aligned_cols=206 Identities=14% Similarity=0.072 Sum_probs=137.1
Q ss_pred CCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHH
Q 010276 280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGN 358 (514)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 358 (514)
|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++.. |++++|+..+++++...|.++.++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 34444444455555555555555555555555555555555555555444 55555555555555566666666666777
Q ss_pred HHHhc-CChHHHHHHHHHhHh--hcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCh
Q 010276 359 LLLSM-KRPEAAVIAFRGAQE--LRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR 434 (514)
Q Consensus 359 ~~~~~-~~~~~A~~~~~~~~~--~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 434 (514)
++... |++++|+..++++++ ..|.. .++..+|.++...|++++|+..++++++..|+++.++..+|.++... |++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA-GQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-TCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc-CCH
Confidence 77777 777777777777776 44444 56777777777777777777777777777777777777777777777 777
Q ss_pred HHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276 435 EKAKKFYESALRLEP-GYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS 486 (514)
Q Consensus 435 ~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 486 (514)
++|+..++++++..| .++.++..++.++...|++++|..+++.+.+..|++.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 777777777777777 7777777777777777777777777777777777664
No 58
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.93 E-value=4e-22 Score=200.19 Aligned_cols=403 Identities=11% Similarity=0.073 Sum_probs=293.1
Q ss_pred hHhhhhhHHHHHHHHHHHHhh-cccCchhhhhhhhhhhhccccCCCCccccc--ccC----ChhHHHHHHHHHHHhcCCH
Q 010276 52 SLFRDREYRRAIHTYKQALQY-YKIVPKQNSTSSRSSLSTSNRSSSPNSFNV--SAI----NENEVKYKIASCHFALGET 124 (514)
Q Consensus 52 ~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~----~~~~~~~~la~~~~~~g~~ 124 (514)
++-....+.+-+--...++.+ ...+|+-.....+.++..|...++.+.+.. ..+ ++......++.+..+. +.
T Consensus 959 vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~ 1037 (1630)
T 1xi4_A 959 VLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DR 1037 (1630)
T ss_pred HhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-Ch
Confidence 333344555555555454443 233445556667777788888888777732 112 2334444466655555 44
Q ss_pred HHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCC
Q 010276 125 KAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGR 204 (514)
Q Consensus 125 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 204 (514)
.+......++. ... .-.+|.++...|.+++|...|+++- ....+...+.. ..++++++.+.+.+.
T Consensus 1038 ~Rv~eyI~kLd-~~d----~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A~~VLie---~i~nldrAiE~Aerv--- 1102 (1630)
T 1xi4_A 1038 TRVMEYINRLD-NYD----APDIANIAISNELFEEAFAIFRKFD----VNTSAVQVLIE---HIGNLDRAYEFAERC--- 1102 (1630)
T ss_pred hhHHHHHHHhh-hcc----HHHHHHHHHhCCCHHHHHHHHHHcC----CHHHHHHHHHH---HHhhHHHHHHHHHhc---
Confidence 55555555442 111 2338999999999999999999973 23333222221 334455554444432
Q ss_pred CCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH
Q 010276 205 APFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT 284 (514)
Q Consensus 205 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 284 (514)
..+.. ++..|..+...|++++|+..|.++ +++..+..+|.++.+.|++++|+++|..+.+..+.. .
T Consensus 1103 -----n~p~v---WsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~ 1168 (1630)
T 1xi4_A 1103 -----NEPAV---WSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-Y 1168 (1630)
T ss_pred -----CCHHH---HHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-c
Confidence 12333 345699999999999999999775 788999999999999999999999999999887543 2
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhc
Q 010276 285 YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM 363 (514)
Q Consensus 285 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (514)
+-..+|.+|.+.+++++ ++.| + .+.+...+..+|..+.. |++++|..+|.++ ..|..+|.++.++
T Consensus 1169 Idt~LafaYAKl~rlee-le~f---I--~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkL 1234 (1630)
T 1xi4_A 1169 VETELIFALAKTNRLAE-LEEF---I--NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHL 1234 (1630)
T ss_pred ccHHHHHHHHhhcCHHH-HHHH---H--hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHh
Confidence 23358999999999885 3333 2 23344566679988777 9999999999986 4788999999999
Q ss_pred CChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 010276 364 KRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYES 443 (514)
Q Consensus 364 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 443 (514)
|++++|++.++++ .+..+|...+.++...|++..|..+... +.. +++.+..++..|... |.+++|+.++++
T Consensus 1235 ge~q~AIEaarKA----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~-G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1235 GEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDR-GYFEELITMLEA 1305 (1630)
T ss_pred CCHHHHHHHHHHh----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 9999999999998 3348899999999999999999988774 333 355666889999998 999999999999
Q ss_pred HHhhCCCChHHHHHHHHHHHH--cCChhHHHHHHHHHHhhCC-----Cc-hHHHHHHHHHHHhccHHHHHHH
Q 010276 444 ALRLEPGYLGAALALAELHVI--EGRNGDAVSLLERYLKDWA-----DD-SLHVKLAQVFAATNMLQEALSH 507 (514)
Q Consensus 444 a~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~g~~~~A~~~ 507 (514)
++.++|.+...+..++.++.+ .++..++++.|...+.+.| +. ..|..+..+|.+-|+++.|...
T Consensus 1306 aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1306 ALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 999999999999888888866 4567788888888777665 22 5899999999999999999943
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.92 E-value=5.2e-24 Score=203.02 Aligned_cols=212 Identities=15% Similarity=0.109 Sum_probs=169.5
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCh-hHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHH
Q 010276 264 KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY-SKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEK 341 (514)
Q Consensus 264 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~ 341 (514)
.+++++..++......|.+..++..+|.++...|++ ++|+..|+++++.+|+++.++..+|.++.. |++++|+.+|++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 356677777777777777888888888888888888 888888888888888888888888887777 888888888888
Q ss_pred HHHhcccCchhHHHHHHHHHhc---------CChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhc--------CCHHHHH
Q 010276 342 SIRIDERHIPGYIMKGNLLLSM---------KRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF--------SKVKEAL 403 (514)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------~~~~~A~ 403 (514)
+++.+|+ ..++..+|.++... |++++|+..|+++++.+|++ .+|..+|.++... |++++|+
T Consensus 163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 8888877 57778888888888 88888888888888888876 6788888888877 7788888
Q ss_pred HHHHHHHhhCC---CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHH
Q 010276 404 YAAREAMKAMP---QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER 477 (514)
Q Consensus 404 ~~~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (514)
..|++++..+| +++.+++.+|.++... |++++|+..|+++++++|+++.++..++.++...|++++|+..+.+
T Consensus 242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYE-ESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888888888 7788888888888887 8888888888888888888888888888888888888877765543
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.92 E-value=3.8e-24 Score=203.94 Aligned_cols=214 Identities=15% Similarity=0.116 Sum_probs=202.6
Q ss_pred CChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cCh-hHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHH
Q 010276 297 CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDE-RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFR 374 (514)
Q Consensus 297 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 374 (514)
+.+++++..+.+.....|.++.+++.+|.++.. |++ ++|+..|+++++.+|+++.++..+|.++...|++++|+..|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 446778888888889999999999999999988 999 999999999999999999999999999999999999999999
Q ss_pred HhHhhcCChHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-----C--CChHHHH
Q 010276 375 GAQELRPDLRSYQGLVHSYLQF---------SKVKEALYAAREAMKAMPQSAKALKLVGDVHASN-----A--SGREKAK 438 (514)
Q Consensus 375 ~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----~--~~~~~A~ 438 (514)
++++.+|+..++..+|.++... |++++|+..++++++.+|+++.++..+|.++... . |++++|+
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 9999999988899999999999 9999999999999999999999999999999862 1 7799999
Q ss_pred HHHHHHHhhCC---CChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHH
Q 010276 439 KFYESALRLEP---GYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEA 510 (514)
Q Consensus 439 ~~~~~a~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 510 (514)
..|+++++++| +++.+++.+|.++...|++++|+..|+++++..|++. ++..++.++..+|++++|++.+.+
T Consensus 242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999 9999999999999999999999999999999999985 999999999999999999987654
No 61
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.92 E-value=1.6e-22 Score=173.48 Aligned_cols=210 Identities=15% Similarity=0.104 Sum_probs=117.8
Q ss_pred HHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 010276 215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLK 294 (514)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 294 (514)
...++.+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 33444556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred Hh-CChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHH
Q 010276 295 VK-CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAF 373 (514)
Q Consensus 295 ~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 373 (514)
.. |++++|+..+++++. .| ..|..+.++..+|.++...|++++|+..+
T Consensus 88 ~~~~~~~~A~~~~~~~~~-~~------------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 136 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALA-DP------------------------------TYPTPYIANLNKGICSAKQGQFGLAEAYL 136 (225)
T ss_dssp TTTCCHHHHHHHHHHHHT-ST------------------------------TCSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHc-Cc------------------------------CCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66 666666666666665 11 22333344444455555555555555555
Q ss_pred HHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 010276 374 RGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMP-QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (514)
Q Consensus 374 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 451 (514)
+++++..|++ .++..+|.++...|++++|+..+++++...| +++..+..++.++... |+.++|..+++.+.+.+|++
T Consensus 137 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~p~~ 215 (225)
T 2vq2_A 137 KRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL-GNAQAAYEYEAQLQANFPYS 215 (225)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHhCCCC
Confidence 5555555443 4455555555555555555555555555555 5555555555555544 55555555555555555555
Q ss_pred hHHHH
Q 010276 452 LGAAL 456 (514)
Q Consensus 452 ~~~~~ 456 (514)
+.+..
T Consensus 216 ~~~~~ 220 (225)
T 2vq2_A 216 EELQT 220 (225)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=6.7e-23 Score=184.52 Aligned_cols=220 Identities=14% Similarity=0.093 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------hCCh-------HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHh
Q 010276 232 KGGLELFAELLQRFPNNIHILLEMAKVDAI-------IGKN-------DEAILNFEKVRS-IDPYIMTYMDEYAMLLKVK 296 (514)
Q Consensus 232 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-------~~~~-------~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 296 (514)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 577778888888888888888888777763 4665 777777777777 5777777777777777777
Q ss_pred CChhHHHHHHHHHhhcCCCChH-HHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHh-cCChHHHHHHH
Q 010276 297 CDYSKLSKLVHDLLSIDPSRPE-VFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS-MKRPEAAVIAF 373 (514)
Q Consensus 297 ~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~ 373 (514)
|++++|...|+++++..|.++. +|..++.++.. |++++|+..|+++++..|....++...+.+... .|++++|...|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777777777777765 67777776655 777777777777777777666666555544332 57777777777
Q ss_pred HHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CC-CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 010276 374 RGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKA---MP-QSAKALKLVGDVHASNASGREKAKKFYESALRLE 448 (514)
Q Consensus 374 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~p-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~ 448 (514)
+++++..|++ ..|..++..+...|++++|...|++++.. .| +...+|..++..+... |+.++|...++++++..
T Consensus 193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~-g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI-GDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHc
Confidence 7777777766 66777777777777777777777777764 34 2566677777777666 77777777777777777
Q ss_pred CCCh
Q 010276 449 PGYL 452 (514)
Q Consensus 449 ~~~~ 452 (514)
|+++
T Consensus 272 p~~~ 275 (308)
T 2ond_A 272 REEY 275 (308)
T ss_dssp TTTT
T ss_pred cccc
Confidence 7644
No 63
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.92 E-value=4.5e-22 Score=176.14 Aligned_cols=228 Identities=13% Similarity=0.078 Sum_probs=207.9
Q ss_pred HHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----hCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 010276 215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAI----IGKNDEAILNFEKVRSIDPYIMTYMDEYA 290 (514)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 290 (514)
....+.+|..+...|++++|+..|+++++ |+++.+++.+|.++.. .+++++|+.+|+++++.+ ++.++..+|
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 81 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence 33456669999999999999999999998 7888999999999999 999999999999999885 789999999
Q ss_pred HHHHH----hCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-----cChhHHHHHHHHHHHhcccCchhHHHHHHHHH
Q 010276 291 MLLKV----KCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-----KDERGALSYAEKSIRIDERHIPGYIMKGNLLL 361 (514)
Q Consensus 291 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (514)
.++.. .+++++|+..++++++. +++.++..+|.++.. +++++|+.+|+++++.. ++.++..+|.++.
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 99999 99999999999999987 489999999998874 89999999999999876 5788999999999
Q ss_pred h----cCChHHHHHHHHHhHhhcCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----
Q 010276 362 S----MKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQ----FSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS---- 429 (514)
Q Consensus 362 ~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 429 (514)
. .+++++|+..|+++++.. +..++..+|.++.. .+++++|+.+++++++..| +.++..+|.++..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~ 234 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK-DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGV 234 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCc
Confidence 8 999999999999999874 34789999999999 9999999999999999866 8899999999998
Q ss_pred cCCChHHHHHHHHHHHhhCCCChHH
Q 010276 430 NASGREKAKKFYESALRLEPGYLGA 454 (514)
Q Consensus 430 ~~~~~~~A~~~~~~a~~~~~~~~~~ 454 (514)
. +++++|+.+|+++++.+|.++..
T Consensus 235 ~-~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 235 T-RNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp S-CCSTTHHHHHHHHHHHTCHHHHH
T ss_pred c-cCHHHHHHHHHHHHHcCCHHHHH
Confidence 7 99999999999999999865443
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.92 E-value=6.5e-23 Score=191.08 Aligned_cols=231 Identities=13% Similarity=0.015 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhh---CCC---CHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC-------h
Q 010276 251 ILLEMAKVDAIIGKNDEAILNFEKVRSI---DPY---IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR-------P 317 (514)
Q Consensus 251 ~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~ 317 (514)
.++.+|.++...|++++|+..|+++++. .++ ...++..+|.++...|++++|+..+.++++..+.. .
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 3445788888888888888888888776 222 35677888888888888888888888887764433 3
Q ss_pred HHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCc------hhHHHHHHHHHhcCChHHHHHHHHHhHhh-----c-CCh-
Q 010276 318 EVFVALSVLWER-KDERGALSYAEKSIRIDERHI------PGYIMKGNLLLSMKRPEAAVIAFRGAQEL-----R-PDL- 383 (514)
Q Consensus 318 ~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~- 383 (514)
.++..+|.++.. |++++|+.++++++...|... .++.++|.++...|++++|+.++++++++ + |..
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 467778887777 888888888888888766543 47888999999999999999999999884 4 444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHhhCCCChHHH
Q 010276 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAM-----PQSAKALKLVGDVHASNASG---REKAKKFYESALRLEPGYLGAA 455 (514)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~l~~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~ 455 (514)
.++..+|.++...|++++|..++++++... |.....+..+|.++... |+ +.+|+..+++. ...|....++
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~al~~~~~~-~~~~~~~~~~ 342 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSG-PDEEAIQGFFDFLESK-MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSS-CCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 678999999999999999999999999874 33334467789999987 88 78888888776 3334445688
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhhCC
Q 010276 456 LALAELHVIEGRNGDAVSLLERYLKDWA 483 (514)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~~~~~~~ 483 (514)
..+|.++...|++++|..+++++++...
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999988754
No 65
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.91 E-value=4.1e-22 Score=171.27 Aligned_cols=206 Identities=9% Similarity=0.071 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 010276 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDP-YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLW 327 (514)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (514)
+..++.+|.++...|++++|+..|+++++.+| .+..++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 34444444444444444444444444444444 44444444444444444444444444444444444444444444444
Q ss_pred hh-cChhHHHHHHHHHHHhcccCc-------hhHHHHHHHHHhcCChHHHHHHHHHhHhhcCC--h-HHHHHHHHHHHhc
Q 010276 328 ER-KDERGALSYAEKSIRIDERHI-------PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD--L-RSYQGLVHSYLQF 396 (514)
Q Consensus 328 ~~-~~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~-~~~~~l~~~~~~~ 396 (514)
.. |++++|+..++++++.+|+++ .++..+|.++...|++++|+..|+++++.+|+ + .++..+|.++...
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 166 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN 166 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 44 444444444444444444444 34566666666667777777777777666666 5 5666666666544
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 010276 397 SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELH 462 (514)
Q Consensus 397 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 462 (514)
| ...++++....+.+...+. +...... +.+++|+.+|+++++++|+++.+...++.+.
T Consensus 167 ~-----~~~~~~a~~~~~~~~~~~~--~~~~~~~-~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 167 G-----ADVLRKATPLASSNKEKYA--SEKAKAD-AAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp H-----HHHHHHHGGGTTTCHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred H-----HHHHHHHHhcccCCHHHHH--HHHHHHH-HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 3 2334455555554433332 2223333 5667777777777777777766666665553
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.91 E-value=3.9e-23 Score=204.05 Aligned_cols=172 Identities=17% Similarity=0.223 Sum_probs=144.0
Q ss_pred cCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHH
Q 010276 312 IDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGL 389 (514)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l 389 (514)
..|++++++.++|.++.. |++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|++ .++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 357778888888888777 888888888888888888888888888888888888888888888888888887 778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChh
Q 010276 390 VHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNG 469 (514)
Q Consensus 390 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 469 (514)
|.++..+|++++|+..|+++++++|+++.++.++|.++... |++++|+..|+++++++|+++.++.++|.++...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~-g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS-GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 88888888888888888888888888888888888888887 88888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhhCCC
Q 010276 470 DAVSLLERYLKDWAD 484 (514)
Q Consensus 470 ~A~~~~~~~~~~~~~ 484 (514)
+|.+.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 888888888877664
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.90 E-value=7.8e-23 Score=201.90 Aligned_cols=173 Identities=16% Similarity=0.172 Sum_probs=160.2
Q ss_pred hCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHH
Q 010276 278 IDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMK 356 (514)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~ 356 (514)
..|++++++..+|.++..+|++++|+..|+++++++|+++.++.++|.++.. |++++|+..|+++++++|+++.++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4688899999999999999999999999999999999999999999998888 999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChH
Q 010276 357 GNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGRE 435 (514)
Q Consensus 357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 435 (514)
|.++..+|++++|+..|+++++++|++ .++.++|.++..+|++++|+..|+++++++|+++.++.++|.++... |+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~-g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV-CDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-TCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc-ccHH
Confidence 999999999999999999999999998 88999999999999999999999999999999999999999999998 9999
Q ss_pred HHHHHHHHHHhhCCCC
Q 010276 436 KAKKFYESALRLEPGY 451 (514)
Q Consensus 436 ~A~~~~~~a~~~~~~~ 451 (514)
+|++.+++++++.|+.
T Consensus 163 ~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 163 DYDERMKKLVSIVADQ 178 (723)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhH
Confidence 9999999998876653
No 68
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.90 E-value=3.6e-22 Score=171.63 Aligned_cols=209 Identities=14% Similarity=0.077 Sum_probs=179.6
Q ss_pred CCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCC-CChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHH
Q 010276 280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP-SRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKG 357 (514)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 357 (514)
+.++..+..+|.++...|++++|+..|++++...| .++.+++.+|.++.. |++++|+..++++++.+|.++.++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 55678999999999999999999999999999998 888899999998888 9999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHhHhhcCChH--------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHH
Q 010276 358 NLLLSMKRPEAAVIAFRGAQELRPDLR--------SYQGLVHSYLQFSKVKEALYAAREAMKAMPQ--SAKALKLVGDVH 427 (514)
Q Consensus 358 ~~~~~~~~~~~A~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~ 427 (514)
.++...|++++|+..|+++++..|++. ++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 999999999999999999999999863 4788999999999999999999999999999 889999999999
Q ss_pred HhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHH
Q 010276 428 ASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFA 496 (514)
Q Consensus 428 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~ 496 (514)
... | ...++++..+.+..+..+ .+......+.+++|+.++++++++.|++. +...++.+..
T Consensus 164 ~~~-~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 164 YNN-G-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHH-H-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHH-H-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 876 4 345667777776665444 34445566789999999999999999985 6666666643
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=5.2e-23 Score=186.09 Aligned_cols=247 Identities=16% Similarity=0.150 Sum_probs=134.2
Q ss_pred CchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhh----
Q 010276 211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR--------FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI---- 278 (514)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 278 (514)
++..+..+..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.++++++..
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666666666666666653 4444556666666666666666666666666654
Q ss_pred ----CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHH-HhcccCchhH
Q 010276 279 ----DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSI-RIDERHIPGY 353 (514)
Q Consensus 279 ----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~ 353 (514)
.|....++..+|.++...|++++|+..+++++.... +.. ...|....++
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--------------------------~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE--------------------------KVLGKDHPDVAKQL 156 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH--------------------------HHHCTTCHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH--------------------------HhcCCCChHHHHHH
Confidence 233344455555555555555555555555443210 000 0013334455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHhh--------cCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---------
Q 010276 354 IMKGNLLLSMKRPEAAVIAFRGAQEL--------RPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ--------- 415 (514)
Q Consensus 354 ~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--------- 415 (514)
..+|.++...|++++|+..+++++.. .|.. .++..+|.++...|++++|+..+++++...|.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 56666666666666666666666655 2222 34566666666666666666666666654322
Q ss_pred C------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC
Q 010276 416 S------AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD 484 (514)
Q Consensus 416 ~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 484 (514)
. ...+...+..+... +.+.+|...+.++....|..+.++..+|.++...|++++|+.++++++++.|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDG-TSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCHHHHHHHHHHC--------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHhcCchhhH-HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 12222333333343 56666777777777777777777777777777777777777777777776654
No 70
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.89 E-value=1.3e-20 Score=165.51 Aligned_cols=230 Identities=8% Similarity=0.032 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC--ChHHHHHHHHHHHhhCCCCHHHHHHHHHHH----HHhCChhHHHHH
Q 010276 232 KGGLELFAELLQRFPNNIHILLEMAKVDAIIG--KNDEAILNFEKVRSIDPYIMTYMDEYAMLL----KVKCDYSKLSKL 305 (514)
Q Consensus 232 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~ 305 (514)
++|+..+++++..+|++..+|..++.++...| ++++++..+..++..+|++..+|...+.++ ...+.
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~------- 122 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN------- 122 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT-------
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc-------
Confidence 35555555555555555555555555555555 555555555555555555555555555554 32200
Q ss_pred HHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChH--HHHHHHHHhHhhcCCh
Q 010276 306 VHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE--AAVIAFRGAQELRPDL 383 (514)
Q Consensus 306 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~~~~~~~~~ 383 (514)
.+++++++.+++++++.+|.+..+|..++.+....|.++ ++++.++++++.+|.+
T Consensus 123 -----------------------~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N 179 (306)
T 3dra_A 123 -----------------------DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN 179 (306)
T ss_dssp -----------------------CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC
T ss_pred -----------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC
Confidence 034556666666666666666666666666666666666 6666666666666665
Q ss_pred -HHHHHHHHHHHhcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhC---CCCh
Q 010276 384 -RSYQGLVHSYLQFSK------VKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLE---PGYL 452 (514)
Q Consensus 384 -~~~~~l~~~~~~~~~------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~-~~A~~~~~~a~~~~---~~~~ 452 (514)
.+|...+.+....+. ++++++++++++..+|++..+|+.++.++... |+. ++...++.+++.++ |.++
T Consensus 180 ~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~~s~ 258 (306)
T 3dra_A 180 NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERF-DRSITQLEEFSLQFVDLEKDQVTSS 258 (306)
T ss_dssp HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT-TCCGGGGHHHHHTTEEGGGTEESCH
T ss_pred HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhc-CCChHHHHHHHHHHHhccCCCCCCH
Confidence 566666666666665 77777777777777777777777777777776 554 33445666666555 6677
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHh-hCCCch-HHHHHH
Q 010276 453 GAALALAELHVIEGRNGDAVSLLERYLK-DWADDS-LHVKLA 492 (514)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~-~~~~l~ 492 (514)
.++..++.++.+.|+.++|+++++.+.+ .+|... .|...+
T Consensus 259 ~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 259 FALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 7777777777777777777777777775 566653 554444
No 71
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.89 E-value=4.5e-21 Score=178.17 Aligned_cols=294 Identities=16% Similarity=0.072 Sum_probs=224.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHH----HHhCChHHHH---------HHHHHHHhhCCC
Q 010276 218 RYVEAQCCIASNDYKGGLELFAELLQRFP---NNIHILLEMAKVD----AIIGKNDEAI---------LNFEKVRSIDPY 281 (514)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~la~~~----~~~~~~~~A~---------~~~~~~~~~~~~ 281 (514)
.+..-......+++++|..+++++.+..+ .+..+....+... ...+.+..+. ..++++-.....
T Consensus 15 ~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 94 (378)
T 3q15_A 15 KINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKK 94 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCC
Confidence 33334455788999999999998866332 3444443222222 1223332222 444444322111
Q ss_pred -C----HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCC------ChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccC
Q 010276 282 -I----MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS------RPEVFVALSVLWER-KDERGALSYAEKSIRIDERH 349 (514)
Q Consensus 282 -~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~ 349 (514)
+ ...++..|..+...|++++|+..+++++...+. ...++..+|.++.. |++++|+.++++++...+..
T Consensus 95 ~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 95 LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred CccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence 1 225677899999999999999999999886432 35678889998888 99999999999999876543
Q ss_pred -------chhHHHHHHHHHhcCChHHHHHHHHHhHhhcC---Ch----HHHHHHHHHHHhcCCHHHHHHHHHHHHh----
Q 010276 350 -------IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP---DL----RSYQGLVHSYLQFSKVKEALYAAREAMK---- 411 (514)
Q Consensus 350 -------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~---- 411 (514)
..++..+|.++...|++++|+..|+++++..+ +. .++.++|.++...|++++|+.++++++.
T Consensus 175 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 175 PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 34678999999999999999999999998743 21 4689999999999999999999999999
Q ss_pred -hCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHcCC---hhHHHHHHHHHHhhC
Q 010276 412 -AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEP-----GYLGAALALAELHVIEGR---NGDAVSLLERYLKDW 482 (514)
Q Consensus 412 -~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~ 482 (514)
.+|..+.++..+|.++... |++++|+.++++++++.+ .....+..++.++...|+ +.+|+..+++.- ..
T Consensus 255 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~ 332 (378)
T 3q15_A 255 KVPDLLPKVLFGLSWTLCKA-GQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LH 332 (378)
T ss_dssp HCGGGHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CH
T ss_pred hCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-Ch
Confidence 7788899999999999999 999999999999999843 334466778888888888 888888887731 11
Q ss_pred CC-chHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 483 AD-DSLHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 483 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
|. ..++..+|.+|...|++++|..+|+++++
T Consensus 333 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 333 AYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22 24888999999999999999999999975
No 72
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.88 E-value=2.5e-21 Score=170.07 Aligned_cols=211 Identities=15% Similarity=0.049 Sum_probs=143.6
Q ss_pred hhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC---hHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccC---
Q 010276 277 SIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR---PEVFVALSVLWER-KDERGALSYAEKSIRIDERH--- 349 (514)
Q Consensus 277 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~--- 349 (514)
...|.++..++.+|..+...|++++|+..|++++...|.+ +.+++.+|.++.. |++++|+..|+++++..|++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 3456666666777777777777777777777776666666 5666666666655 66666666666666665543
Q ss_pred chhHHHHHHHHHh--------cCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 010276 350 IPGYIMKGNLLLS--------MKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420 (514)
Q Consensus 350 ~~~~~~~~~~~~~--------~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 420 (514)
+.+++.+|.++.. .|++++|+..|+++++..|++ .+...+..+... .+.....+
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~-----------------~~~~~~~~ 151 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL-----------------RAKLARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH-----------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH-----------------HHHHHHHH
Confidence 3355666666666 666666666666666666654 222111111100 01112235
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHc----------CChhHHHHHHHHHHhhCCCc--
Q 010276 421 KLVGDVHASNASGREKAKKFYESALRLEPG---YLGAALALAELHVIE----------GRNGDAVSLLERYLKDWADD-- 485 (514)
Q Consensus 421 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~~~~~~~~~-- 485 (514)
+.+|.++... |++++|+..|+++++..|+ .+.+++.+|.++... |++++|+..|+++++..|++
T Consensus 152 ~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 152 YEAARLYERR-ELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHc-cCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 8889999998 9999999999999999888 456889999999877 88899999999999999987
Q ss_pred --hHHHHHHHHHHHhccHHHHH
Q 010276 486 --SLHVKLAQVFAATNMLQEAL 505 (514)
Q Consensus 486 --~~~~~l~~~~~~~g~~~~A~ 505 (514)
.+...++.++...|+++++.
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHhhhhh
Confidence 36777888888888876654
No 73
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.88 E-value=3.6e-20 Score=162.66 Aligned_cols=216 Identities=10% Similarity=-0.024 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHh
Q 010276 266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRI 345 (514)
Q Consensus 266 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~ 345 (514)
++|+..+.+++.++|++..+|...+.++...|. .++++++..++.++..
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~-------------------------------~~~~eeL~~~~~~L~~ 98 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPN-------------------------------RNLYDELDWCEEIALD 98 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT-------------------------------SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc-------------------------------ccHHHHHHHHHHHHHH
Confidence 467777777777777777777777766666651 1445555555555555
Q ss_pred cccCchhHHHHHHHH----Hhc---CChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHH--HHHHHHHHHHhhCCC
Q 010276 346 DERHIPGYIMKGNLL----LSM---KRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVK--EALYAAREAMKAMPQ 415 (514)
Q Consensus 346 ~~~~~~~~~~~~~~~----~~~---~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~p~ 415 (514)
+|++..+|..++.++ ... +++++++..+.++++.+|.+ .+|...+.+....|.++ ++++.++++++.+|.
T Consensus 99 nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~ 178 (306)
T 3dra_A 99 NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK 178 (306)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT
T ss_pred CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC
Confidence 566666666665555 444 78999999999999999998 89999999999999998 999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhH-HHHHHHHHHhhC---CCc
Q 010276 416 SAKALKLVGDVHASNASG------REKAKKFYESALRLEPGYLGAALALAELHVIEGRNGD-AVSLLERYLKDW---ADD 485 (514)
Q Consensus 416 ~~~~~~~l~~~~~~~~~~------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~~~~~~---~~~ 485 (514)
+..+|..++.++... +. ++++++++.+++..+|++..+|..++.++...|+..+ ....++++++.. |.+
T Consensus 179 N~sAW~~R~~ll~~l-~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s 257 (306)
T 3dra_A 179 NNSAWSHRFFLLFSK-KHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTS 257 (306)
T ss_dssp CHHHHHHHHHHHHSS-GGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESC
T ss_pred CHHHHHHHHHHHHhc-cccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCC
Confidence 999999999999988 76 8999999999999999999999999999999999655 556777777765 555
Q ss_pred -hHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 486 -SLHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 486 -~~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
.++..++.++.+.|+.++|+++|+++.+
T Consensus 258 ~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 258 SFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 4999999999999999999999999864
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.88 E-value=3.6e-22 Score=180.60 Aligned_cols=254 Identities=15% Similarity=0.093 Sum_probs=166.3
Q ss_pred hcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCc--CCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Q 010276 169 RHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDH--LDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR-- 244 (514)
Q Consensus 169 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-- 244 (514)
..+|....++..++.++...++..++............... ..+.....+..+|.++...|++++|+..+++++..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 44677788899999999999999999999988875322111 24556667788899999999999999999999986
Q ss_pred ------CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhCChhHHHHHHHHHh
Q 010276 245 ------FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID--------PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLL 310 (514)
Q Consensus 245 ------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 310 (514)
.|....++..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|+.++++++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35567899999999999999999999999999873 4445667777778877888777777777776
Q ss_pred hc--------CCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhccc---------CchhHHHHHHHHHhcCChHHHHHH
Q 010276 311 SI--------DPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDER---------HIPGYIMKGNLLLSMKRPEAAVIA 372 (514)
Q Consensus 311 ~~--------~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~A~~~ 372 (514)
.. .|....++..+|.++.. |++++|+.++++++...|. ....+...
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~---------------- 244 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA---------------- 244 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH----------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH----------------
Confidence 65 33333444444444444 5555555555555443222 00011000
Q ss_pred HHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC
Q 010276 373 FRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG 450 (514)
Q Consensus 373 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~ 450 (514)
..+...+..+...+.+.+|...++++....|..+.++..+|.++... |++++|+.+|++++++.|+
T Consensus 245 -----------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 245 -----------EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQ-GKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -----------HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHC-
T ss_pred -----------HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHhhc
Confidence 11233344444455666666677777777777777777777777777 7777777777777776654
No 75
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.88 E-value=7.4e-21 Score=171.82 Aligned_cols=370 Identities=11% Similarity=0.061 Sum_probs=198.1
Q ss_pred hhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccC
Q 010276 15 GLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRS 94 (514)
Q Consensus 15 ~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 94 (514)
|..+.|...++.+ ..+.+|..+|.++.+.|++++|++.|.++ .++..+...+.++...|.++
T Consensus 17 ~~ld~A~~fae~~-------------~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 17 GNLDRAYEFAERC-------------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC-------------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHH
Confidence 4466666665543 22359999999999999999999999774 35556777778888889999
Q ss_pred CCCccccc--ccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 010276 95 SSPNSFNV--SAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCP 172 (514)
Q Consensus 95 ~a~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 172 (514)
++...+.. ....++.+...++.+|.++|++.++.+.++. | +..++..+|..+...|++++|+..|.++ +
T Consensus 79 eAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a----~ 149 (449)
T 1b89_A 79 ELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV----S 149 (449)
T ss_dssp ------------------------------CHHHHTTTTTC----C-----------------CTTTHHHHHHHT----T
T ss_pred HHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh----h
Confidence 99986632 2334466778899999999999998877753 3 3459999999999999999999999976 1
Q ss_pred CCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 010276 173 FFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHIL 252 (514)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 252 (514)
.+. .+|.++.+.|++++|++.++++ .++.+|
T Consensus 150 ----n~~----------------------------------------~LA~~L~~Lg~yq~AVea~~KA-----~~~~~W 180 (449)
T 1b89_A 150 ----NFG----------------------------------------RLASTLVHLGEYQAAVDGARKA-----NSTRTW 180 (449)
T ss_dssp ----CHH----------------------------------------HHHHHHHTTTCHHHHHHHHHHH-----TCHHHH
T ss_pred ----hHH----------------------------------------HHHHHHHHhccHHHHHHHHHHc-----CCchhH
Confidence 222 3389999999999999999998 478999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh---
Q 010276 253 LEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER--- 329 (514)
Q Consensus 253 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 329 (514)
.....++...|+++.|..+...+ ...|+ -...++.+|.+.|++++|+.++++++..++.+...+..+|.++..
T Consensus 181 k~v~~aCv~~~ef~lA~~~~l~L-~~~ad---~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p 256 (449)
T 1b89_A 181 KEVCFACVDGKEFRLAQMCGLHI-VVHAD---ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP 256 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHTTTTT-TTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHH-HhCHh---hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCH
Confidence 99999999999999998777753 34444 455688999999999999999999999999999999999999998
Q ss_pred cChhHHHHHHHHHHHhcc-----cCchhHHHHHHHHHhcCChHHHHHHHHHhHhh------------cCCh-HHHHHHHH
Q 010276 330 KDERGALSYAEKSIRIDE-----RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL------------RPDL-RSYQGLVH 391 (514)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------~~~~-~~~~~l~~ 391 (514)
++..+.++.|...+.+.| .++..|..+..+|...++++.|+...-..... .+.+ +.++....
T Consensus 257 ~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~ 336 (449)
T 1b89_A 257 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQ 336 (449)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHH
Confidence 677788888888888888 78999999999999999999998766554322 2333 55666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHH
Q 010276 392 SYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDA 471 (514)
Q Consensus 392 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 471 (514)
.|. +....++..+..++.-.-+.. .....+.+. |...-...+++.+.. .++..+--.+-.++...++++.=
T Consensus 337 fyl--~~~p~~l~~ll~~l~~~ld~~----r~v~~~~~~-~~l~l~~~yl~~v~~--~n~~~vnealn~l~ieeed~~~l 407 (449)
T 1b89_A 337 FYL--EFKPLLLNDLLMVLSPRLDHT----RAVNYFSKV-KQLPLVKPYLRSVQN--HNNKSVNESLNNLFITEEDYQAL 407 (449)
T ss_dssp HHH--HHCGGGHHHHHHHHGGGCCHH----HHHHHHHHT-TCTTTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHH--hcCHHHHHHHHHHHHhccCcH----HHHHHHHHc-CCcHHHHHHHHHHHH--hhHHHHHHHHHHHHHhhhhHHHH
Confidence 665 444455666666662211211 222333444 777777777755543 34566677788888888888654
Q ss_pred HH
Q 010276 472 VS 473 (514)
Q Consensus 472 ~~ 473 (514)
..
T Consensus 408 r~ 409 (449)
T 1b89_A 408 RT 409 (449)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.87 E-value=4.2e-20 Score=171.64 Aligned_cols=230 Identities=13% Similarity=0.050 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC-------h
Q 010276 251 ILLEMAKVDAIIGKNDEAILNFEKVRSIDP------YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR-------P 317 (514)
Q Consensus 251 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~ 317 (514)
.++.+|..+...|++++|+..|+++++..+ ....++..+|.++...|+++.|+..+++++...+.. .
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 344556666666666666666666665421 124456666666666666666666666666543321 2
Q ss_pred HHHHHHHHHHhh-cChhHHHHHHHHHHHhccc------CchhHHHHHHHHHhcCChHHHHHHHHHhHh-----hcCCh-H
Q 010276 318 EVFVALSVLWER-KDERGALSYAEKSIRIDER------HIPGYIMKGNLLLSMKRPEAAVIAFRGAQE-----LRPDL-R 384 (514)
Q Consensus 318 ~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-----~~~~~-~ 384 (514)
.++..+|.++.. |++++|+.++++++...+. ...++.++|.++...|++++|+.++++++. .+|.. .
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 345566666666 7777777777777765332 234677888888888888888888888887 45555 5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHhhCCCChHHHH
Q 010276 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMP-----QSAKALKLVGDVHASNASG---REKAKKFYESALRLEPGYLGAAL 456 (514)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~ 456 (514)
++..+|.++...|++++|+.++++++...+ .....+..++.++... ++ +.+|+..+++. ...|....++.
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~-~~~~~~~~al~~~~~~-~~~~~~~~~~~ 340 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKET-VDERKIHDLLSYFEKK-NLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhC-CChhHHHHHHH
Confidence 688888888888888888888888888743 3345566777777776 77 77777777762 22334455777
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhhC
Q 010276 457 ALAELHVIEGRNGDAVSLLERYLKDW 482 (514)
Q Consensus 457 ~la~~~~~~g~~~~A~~~~~~~~~~~ 482 (514)
.+|.++...|++++|..+|+++++..
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999887754
No 77
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.87 E-value=1.9e-21 Score=175.66 Aligned_cols=352 Identities=11% Similarity=0.049 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCc
Q 010276 109 EVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATP 188 (514)
Q Consensus 109 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 188 (514)
+++..+|..+...|++++|+..+.+. .++..+...+..+...|++++|+.+++.+.+..|+ +.+...++.++...
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Kl 107 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKT 107 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHh
Confidence 35666666666777777777666542 35556666666666677777777766666654333 44455555555555
Q ss_pred ccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHH
Q 010276 189 KDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEA 268 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A 268 (514)
++..++.+.... | ........|..+...|+|++|..+|.++ ..+..+|.++.++|++++|
T Consensus 108 g~l~e~e~f~~~-----p-------n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~A 167 (449)
T 1b89_A 108 NRLAELEEFING-----P-------NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAA 167 (449)
T ss_dssp -CHHHHTTTTTC-----C-----------------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHH
T ss_pred CCHHHHHHHHcC-----C-------cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHH
Confidence 555443322211 0 1113445599999999999999999977 4688999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcc
Q 010276 269 ILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDE 347 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~ 347 (514)
++.++++ .++.+|...+.++...|+++.|..+...+. . +|+-...+..+|.. |.+++|+.++++++..++
T Consensus 168 Vea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~---~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ 238 (449)
T 1b89_A 168 VDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-V---HADELEELINYYQDRGYFEELITMLEAALGLER 238 (449)
T ss_dssp HHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-h---CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcH
Confidence 9999999 478899999999999999999977766522 3 44445567777777 999999999999999999
Q ss_pred cCchhHHHHHHHHHh--cCChHHHHHHHHHhHhhcC-----Ch-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-------
Q 010276 348 RHIPGYIMKGNLLLS--MKRPEAAVIAFRGAQELRP-----DL-RSYQGLVHSYLQFSKVKEALYAAREAMKA------- 412 (514)
Q Consensus 348 ~~~~~~~~~~~~~~~--~~~~~~A~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------- 412 (514)
.+...+..+|.++.+ .++..+.++.|...+.+.| +. ..|..++.+|...++++.|+...-+....
T Consensus 239 ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f 318 (449)
T 1b89_A 239 AHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQF 318 (449)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHH
Confidence 999999999988865 4567777888777766666 33 67999999999999999998866554332
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH--hhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276 413 -----MPQSAKALKLVGDVHASNASGREKAKKFYESAL--RLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 413 -----~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (514)
.+.+.++++.....|. +....++..+..++ +++++ .....+.+.|+..-...+++.+... ...
T Consensus 319 ~~~~~kv~n~elyYkai~fyl---~~~p~~l~~ll~~l~~~ld~~------r~v~~~~~~~~l~l~~~yl~~v~~~-n~~ 388 (449)
T 1b89_A 319 KDIITKVANVELYYRAIQFYL---EFKPLLLNDLLMVLSPRLDHT------RAVNYFSKVKQLPLVKPYLRSVQNH-NNK 388 (449)
T ss_dssp HHHHHHCSSTHHHHHHHHHHH---HHCGGGHHHHHHHHGGGCCHH------HHHHHHHHTTCTTTTHHHHHHHHTT-CCH
T ss_pred HHHHhchhHHHHHHHHHHHHH---hcCHHHHHHHHHHHHhccCcH------HHHHHHHHcCCcHHHHHHHHHHHHh-hHH
Confidence 4667888888888777 44566788888888 44442 3445667888888888888665432 233
Q ss_pred hHHHHHHHHHHHhccHHHH
Q 010276 486 SLHVKLAQVFAATNMLQEA 504 (514)
Q Consensus 486 ~~~~~l~~~~~~~g~~~~A 504 (514)
.+.-.+-.+|....+++.=
T Consensus 389 ~vnealn~l~ieeed~~~l 407 (449)
T 1b89_A 389 SVNESLNNLFITEEDYQAL 407 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhhhhHHHH
Confidence 4666677788888877543
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.87 E-value=6.7e-20 Score=170.18 Aligned_cols=268 Identities=13% Similarity=0.008 Sum_probs=183.0
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC------HH
Q 010276 216 LHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI-----HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI------MT 284 (514)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~ 284 (514)
......|.++...|++++|+..+++++...|.+. .++..+|.++...|++++|...+++++...|.. ..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3445678888888999999999999888776542 256778888888899999999998888765543 23
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHhhcC--------CCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccC-----c
Q 010276 285 YMDEYAMLLKVKCDYSKLSKLVHDLLSID--------PSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERH-----I 350 (514)
Q Consensus 285 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~-----~ 350 (514)
++..+|.++...|++++|+..+++++... |.....+..+|.++.. |++++|..++++++...|.. .
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 35677888888888888888888887653 2223455566666655 77777777777777765542 2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHhhcCC--h-HHHH-----HHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HH
Q 010276 351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD--L-RSYQ-----GLVHSYLQFSKVKEALYAAREAMKAMPQS----AK 418 (514)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~-~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~ 418 (514)
.++..+|.++...|++++|...+++++...+. . ..+. ..+.++...|++++|...+++++...|.. ..
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 34666777777777777777777777765322 1 1111 23444667777777777777777655432 23
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC
Q 010276 419 ALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLKDWAD 484 (514)
Q Consensus 419 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 484 (514)
.+..+|.++... |++++|...+++++...+.. ..++..+|.++...|++++|...+++++...+.
T Consensus 255 ~~~~la~~~~~~-g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 255 QWRNIARAQILL-GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 456677777776 77777777777776653321 235666777777777777777777777766544
No 79
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.87 E-value=9e-21 Score=188.68 Aligned_cols=185 Identities=10% Similarity=-0.073 Sum_probs=166.2
Q ss_pred hCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCC
Q 010276 244 RFPNNIHILLEMAKVDAIIGKNDEAILNFEKVR--------SIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS 315 (514)
Q Consensus 244 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 315 (514)
.+|+++.+++..+ ...|++++|++.+++++ +.+|++..++..+|.++...|++++|+..++++++.+|+
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 465 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW 465 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence 5777877777666 77899999999999999 888999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHH
Q 010276 316 RPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSY 393 (514)
Q Consensus 316 ~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~ 393 (514)
++.+++.+|.++.. |++++|+..|+++++.+|+++.++..+|.++...|++++ +..|+++++.+|++ .+++++|.++
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~ 544 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARAR 544 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHH
Confidence 99999999998888 999999999999999999999999999999999999999 99999999999998 8899999999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCC
Q 010276 394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASG 433 (514)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 433 (514)
...|++++|+..|+++++.+|++..++.++|.++... ++
T Consensus 545 ~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~-~~ 583 (681)
T 2pzi_A 545 SAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSG-RS 583 (681)
T ss_dssp HHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-----
T ss_pred HHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHcc-CC
Confidence 9999999999999999999999999999999998765 55
No 80
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.87 E-value=1.1e-17 Score=163.15 Aligned_cols=210 Identities=8% Similarity=-0.019 Sum_probs=102.4
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHH-HHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhc
Q 010276 303 SKLVHDLLSIDPSRPEVFVALSVLWER-KDERGAL-SYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR 380 (514)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 380 (514)
...|++++...|..+..|...+..... |+.++|. ..|++++...|.+...|...+.+....|+++.|..+|++++...
T Consensus 329 ~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 329 TYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444 4444554 55555555555554455555555555555555555555554421
Q ss_pred -----------CC-----------h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHhcCCChHH
Q 010276 381 -----------PD-----------L-RSYQGLVHSYLQFSKVKEALYAAREAMKA-MPQSAKALKLVGDVHASNASGREK 436 (514)
Q Consensus 381 -----------~~-----------~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~~~~~ 436 (514)
|. . .+|...+....+.|..+.|..+|.++++. .+....++...+.+.....++.+.
T Consensus 409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~ 488 (679)
T 4e6h_A 409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKT 488 (679)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHH
Confidence 21 1 23444444444555555555555555544 222334444444443333123455
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC---c-hHHHHHHHHHHHhccHHHHHHHHHHHh
Q 010276 437 AKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD---D-SLHVKLAQVFAATNMLQEALSHYEAAL 512 (514)
Q Consensus 437 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~-~~~~~l~~~~~~~g~~~~A~~~~~~al 512 (514)
|...|+++++..|+++..|...+......|+.+.|..+|++++...|+ . .+|......-...|+.+.+...++++.
T Consensus 489 Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~ 568 (679)
T 4e6h_A 489 ACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFF 568 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555442 1 244444444445555555555555443
No 81
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.86 E-value=3e-21 Score=192.08 Aligned_cols=185 Identities=15% Similarity=0.071 Sum_probs=124.7
Q ss_pred cCCCChHHHHHHHHHHhhcChhHHHHHHHHHH--------HhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh
Q 010276 312 IDPSRPEVFVALSVLWERKDERGALSYAEKSI--------RIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL 383 (514)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 383 (514)
.+|+++..++..+ ...|++++|+..+++++ +.+|++..++..+|.++...|++++|+..|+++++.+|++
T Consensus 389 ~~p~~~~a~~~~a--~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 466 (681)
T 2pzi_A 389 VDPTDVAASVLQA--TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR 466 (681)
T ss_dssp CCTTSTTHHHHHH--TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCcchHHhhc--ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch
Confidence 4566666555544 33366777777777776 6667777777777777777777777777777777777766
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 010276 384 -RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELH 462 (514)
Q Consensus 384 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 462 (514)
.+|+.+|.++...|++++|+..|+++++.+|+++.++.++|.++... |++++ +..|+++++++|+++.+++++|.++
T Consensus 467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~-g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~ 544 (681)
T 2pzi_A 467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELA-GNTDE-HKFYQTVWSTNDGVISAAFGLARAR 544 (681)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH-TCCCT-TCHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CChHH-HHHHHHHHHhCCchHHHHHHHHHHH
Confidence 66777777777777777777777777777777777777777777776 77777 7777777777777777777777777
Q ss_pred HHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhcc
Q 010276 463 VIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNM 500 (514)
Q Consensus 463 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~ 500 (514)
...|++++|+..|+++++.+|++. +++.+|.++...|+
T Consensus 545 ~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 545 SAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 777777777777777777777653 66667766655333
No 82
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.86 E-value=2.6e-20 Score=163.49 Aligned_cols=190 Identities=15% Similarity=0.114 Sum_probs=109.8
Q ss_pred CchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC---HH
Q 010276 211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI---MT 284 (514)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~ 284 (514)
.+......+.+|..++..|++++|+..|+++++.+|++ +.+++.+|.++...|++++|+..|+++++..|++ +.
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 34444555666666666666666666666666666666 6666666666666666666666666666665543 44
Q ss_pred HHHHHHHHHHH--------hCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHH
Q 010276 285 YMDEYAMLLKV--------KCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMK 356 (514)
Q Consensus 285 ~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 356 (514)
+++.+|.++.. .|++++|+..|++++...|+++.+...+..+... .+.....++.+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~----------------~~~~~~~~~~l 154 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL----------------RAKLARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH----------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH----------------HHHHHHHHHHH
Confidence 56666666666 6666666666666666666655443333221111 01112224556
Q ss_pred HHHHHhcCChHHHHHHHHHhHhhcCCh----HHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhCCCC
Q 010276 357 GNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQF----------SKVKEALYAAREAMKAMPQS 416 (514)
Q Consensus 357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~ 416 (514)
|.++...|++++|+..|+++++..|+. .++..+|.++... |++++|+..|+++++.+|++
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 666666666666666666666665552 3455566666544 44555555555555555554
No 83
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.86 E-value=1.1e-20 Score=159.32 Aligned_cols=173 Identities=10% Similarity=0.053 Sum_probs=130.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH----------------HHHHHHHhCChHHHHHHHHHHHhhCCC
Q 010276 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLE----------------MAKVDAIIGKNDEAILNFEKVRSIDPY 281 (514)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~~~~~~~~ 281 (514)
.+..|..++..|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|+++++.+|+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 86 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN 86 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 4566888999999999999999999999999888888 888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-c--ChhHHHHHHHHHHHhcccCchhHHHHHH
Q 010276 282 IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-K--DERGALSYAEKSIRIDERHIPGYIMKGN 358 (514)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 358 (514)
++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.. + +...+...+.+++...|. ..+++.+|.
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~ 165 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGL 165 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHH
Confidence 888888888888888888888888888888888888888888877654 3 334566666666543332 235666777
Q ss_pred HHHhcCChHHHHHHHHHhHhhcCChHHHHHHHH
Q 010276 359 LLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVH 391 (514)
Q Consensus 359 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~ 391 (514)
++...|++++|+..|++++++.|+..+...+..
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 777777777777777777777777654443433
No 84
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.86 E-value=1.3e-20 Score=158.86 Aligned_cols=177 Identities=11% Similarity=0.070 Sum_probs=152.4
Q ss_pred ChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHH----------------HHHHHHhcCChHHHHHHHHHhHh
Q 010276 316 RPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIM----------------KGNLLLSMKRPEAAVIAFRGAQE 378 (514)
Q Consensus 316 ~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~A~~~~~~~~~ 378 (514)
+++.+...|..+.. |++++|+..|++++..+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677778887776 99999999999999999999999999 99999999999999999999999
Q ss_pred hcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHhhCCCChHHH
Q 010276 379 LRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASG--REKAKKFYESALRLEPGYLGAA 455 (514)
Q Consensus 379 ~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~ 455 (514)
.+|++ .++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++... |+ ...+...+.+++...|. ..++
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~a~ 160 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLT-AEQEKKKLETDYKKLSSPTKM-QYAR 160 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HHHHHHHHHHHHC---CCCHH-HHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHhCCCch-hHHH
Confidence 99998 88999999999999999999999999999999999999999998765 54 45677778777643332 3477
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHH
Q 010276 456 LALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQV 494 (514)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 494 (514)
+.+|.++...|++++|+..|++++++.|++.....+..+
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~i 199 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 889999999999999999999999999997766555554
No 85
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.86 E-value=3.7e-21 Score=152.58 Aligned_cols=144 Identities=15% Similarity=0.130 Sum_probs=92.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCh
Q 010276 356 KGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR 434 (514)
Q Consensus 356 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 434 (514)
+|.++...|++++|+..+++++...|+. ..++.+|.+|...|++++|+..|+++++.+|+++.++..+|.++... |++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE-ENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-Cch
Confidence 4566666666666666666666666655 45666666666666666666666666666666666677777776666 667
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHH-HHHHHhhCCCch-HHHHHHHHHHHhcc
Q 010276 435 EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSL-LERYLKDWADDS-LHVKLAQVFAATNM 500 (514)
Q Consensus 435 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~~~~~~~~~~-~~~~l~~~~~~~g~ 500 (514)
++|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|++. ++..++.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777777777776666666677766666666655544 466666666664 55555666665553
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.85 E-value=6.9e-21 Score=150.99 Aligned_cols=144 Identities=15% Similarity=0.083 Sum_probs=128.4
Q ss_pred HHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHH
Q 010276 323 LSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVK 400 (514)
Q Consensus 323 l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 400 (514)
||.++.. |++++|+..+++++...|+++..++.+|.+|...|++++|+..|+++++++|++ .+|..+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 5566655 888999999999999999999999999999999999999999999999999998 88999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHH-HHHHHhhCCCChHHHHHHHHHHHHcCC
Q 010276 401 EALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKF-YESALRLEPGYLGAALALAELHVIEGR 467 (514)
Q Consensus 401 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~-~~~a~~~~~~~~~~~~~la~~~~~~g~ 467 (514)
+|+..|+++++++|+++.+++.+|.++... |++++|... ++++++++|+++.++..++.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKN-DVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-CSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999998 998776665 589999999999999999999888875
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.85 E-value=3.4e-20 Score=165.29 Aligned_cols=225 Identities=10% Similarity=0.008 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 010276 233 GGLELFAELLQRFPNNIHILLEMAKVDAII---GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL 309 (514)
Q Consensus 233 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 309 (514)
+|.+++.++-+.-+.....+ .++.. +++++|+..|+++ +.++...|++++|+..|.++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 46667777766655432222 11122 1477777777776 44566777777777777777
Q ss_pred hhcCCC------ChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccC------chhHHHHHHHHHhc-CChHHHHHHHHH
Q 010276 310 LSIDPS------RPEVFVALSVLWER-KDERGALSYAEKSIRIDERH------IPGYIMKGNLLLSM-KRPEAAVIAFRG 375 (514)
Q Consensus 310 ~~~~~~------~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~A~~~~~~ 375 (514)
+...+. ...++..+|.++.. |++++|+.++++++.+.|.. ..++..+|.++... |++++|+.+|++
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 665321 13455666666655 66666666666666665543 23455666666664 666666666666
Q ss_pred hHhhcCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHhcCCChHHHHHHH
Q 010276 376 AQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAK-------ALKLVGDVHASNASGREKAKKFY 441 (514)
Q Consensus 376 ~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~l~~~~~~~~~~~~~A~~~~ 441 (514)
++++.|.. .++..+|.++..+|++++|+..|++++...|++.. .+..+|.++... |++++|+..|
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~ 222 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAA-TDAVAAARTL 222 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 66655431 23555666666666666666666666666555432 455566666665 6666666666
Q ss_pred HHHHhhCCCChHH-----HHHHHHHHH--HcCChhHHHHHHHH
Q 010276 442 ESALRLEPGYLGA-----ALALAELHV--IEGRNGDAVSLLER 477 (514)
Q Consensus 442 ~~a~~~~~~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~ 477 (514)
+++++++|+.... +..++..+. ..+++++|+..|++
T Consensus 223 ~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 223 QEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp HGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 6666666654432 223333332 23445555555544
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.85 E-value=2.4e-20 Score=166.20 Aligned_cols=216 Identities=13% Similarity=0.019 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhCChhHHHH
Q 010276 231 YKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY------IMTYMDEYAMLLKVKCDYSKLSK 304 (514)
Q Consensus 231 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~ 304 (514)
+++|+..|+++ |.++...|++++|+..|++++++.+. ...++..+|.++...|++++|+.
T Consensus 33 ~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 98 (292)
T 1qqe_A 33 FEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98 (292)
T ss_dssp HHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 66666666555 45566677777777777777765321 14566777777777777777777
Q ss_pred HHHHHhhcCCCC------hHHHHHHHHHHhh--cChhHHHHHHHHHHHhcccC------chhHHHHHHHHHhcCChHHHH
Q 010276 305 LVHDLLSIDPSR------PEVFVALSVLWER--KDERGALSYAEKSIRIDERH------IPGYIMKGNLLLSMKRPEAAV 370 (514)
Q Consensus 305 ~~~~~~~~~~~~------~~~~~~l~~~~~~--~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~ 370 (514)
++++++.+.|.. ..++..+|.++.. |++++|+.+|++++++.|.. ..++..+|.++...|++++|+
T Consensus 99 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 178 (292)
T 1qqe_A 99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS 178 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 777777665433 3456667776664 77777777777777776653 345666777777777777777
Q ss_pred HHHHHhHhhcCCh-H-------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH-----HHHHHHHHH--hcCCChH
Q 010276 371 IAFRGAQELRPDL-R-------SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKA-----LKLVGDVHA--SNASGRE 435 (514)
Q Consensus 371 ~~~~~~~~~~~~~-~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~~~~~~ 435 (514)
..|+++++..|+. . .+..+|.++...|++++|+..|++++.++|+.... +..++..+. .. ++++
T Consensus 179 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~-~~~~ 257 (292)
T 1qqe_A 179 DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS-EQLS 257 (292)
T ss_dssp HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCT-TTHH
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCH-HHHH
Confidence 7777777766653 1 35667777777777777777777777777665432 333444443 22 5667
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHH
Q 010276 436 KAKKFYESALRLEPGYLGAALALAEL 461 (514)
Q Consensus 436 ~A~~~~~~a~~~~~~~~~~~~~la~~ 461 (514)
+|+..|++++.++|....++..+-..
T Consensus 258 ~A~~~~~~~~~l~~~~~~~~~~~k~~ 283 (292)
T 1qqe_A 258 EHCKEFDNFMRLDKWKITILNKIKES 283 (292)
T ss_dssp HHHHHHTTSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccHHHHHHHHHHHHHH
Confidence 77777777766666655555444433
No 89
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.85 E-value=4e-19 Score=164.95 Aligned_cols=264 Identities=14% Similarity=0.047 Sum_probs=210.0
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCCh------
Q 010276 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM-----TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP------ 317 (514)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------ 317 (514)
..+...+|.++...|++++|+..+++++...|... .++..+|.++...|++++|...+++++...|...
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 46777888999999999999999999998877552 2577889999999999999999999988655432
Q ss_pred HHHHHHHHHHhh-cChhHHHHHHHHHHHhcc--------cCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-----
Q 010276 318 EVFVALSVLWER-KDERGALSYAEKSIRIDE--------RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----- 383 (514)
Q Consensus 318 ~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----- 383 (514)
.++..+|.++.. |++++|+..+++++...+ .....+..+|.++...|++++|...+++++...|..
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 235667777776 999999999999988753 234466779999999999999999999999887652
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHH-----HHHHHHHhcCCChHHHHHHHHHHHhhCCCC----
Q 010276 384 -RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ--SAKALK-----LVGDVHASNASGREKAKKFYESALRLEPGY---- 451 (514)
Q Consensus 384 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~-----~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~---- 451 (514)
.++..+|.++...|++++|...+++++...+. .+..+. ..+.++... |++++|...+++++...|..
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT-GDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHC-CCHHHHHHHHHhCCCCCCCcchhh
Confidence 45788899999999999999999999876332 211121 344557777 99999999999998876653
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC-----c--hHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 452 LGAALALAELHVIEGRNGDAVSLLERYLKDWAD-----D--SLHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~--~~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
...+..++.++...|++++|...+++++...+. . .++..+|.++...|++++|...|++++.
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 235678899999999999999999999876542 1 3777889999999999999999998875
No 90
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.84 E-value=6.2e-17 Score=158.02 Aligned_cols=391 Identities=12% Similarity=0.051 Sum_probs=272.2
Q ss_pred HHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcC-CCC
Q 010276 59 YRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGI-PSK 137 (514)
Q Consensus 59 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~ 137 (514)
..+-+..|++.+..+| .+...+..++......+.++.+..++++. ...
T Consensus 48 ~~d~i~~lE~~l~~np-------------------------------~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f 96 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP-------------------------------TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF 96 (679)
T ss_dssp CSCHHHHHHHHHHHCT-------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCc-------------------------------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC
Confidence 4556677888888877 45566667777777788999999999985 344
Q ss_pred CccHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhcCC--CCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCc
Q 010276 138 ARNLQMSLLMAKLYRNSRH---NRGAVACYKECLRHCP--FFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDS 212 (514)
Q Consensus 138 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (514)
|.....|...+......|+ ++.+..+|++++...| .+...|..........++.. .
T Consensus 97 P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~-------------------~ 157 (679)
T 4e6h_A 97 PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDII-------------------T 157 (679)
T ss_dssp TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCST-------------------T
T ss_pred CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccc-------------------c
Confidence 8899999999999889898 9999999999999984 67777766533211100000 0
Q ss_pred hhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHH---------HhCChHHHHHHHHHHHhhC
Q 010276 213 SRWLHRYVEAQCCIASNDYKGGLELFAELLQR----FPNNIHILLEMAKVDA---------IIGKNDEAILNFEKVRSID 279 (514)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~---------~~~~~~~A~~~~~~~~~~~ 279 (514)
+ ..+..+.....|++++.. +|.+..+|........ ..++.+.+..+|++++...
T Consensus 158 ---------~----~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP 224 (679)
T 4e6h_A 158 ---------G----GEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQP 224 (679)
T ss_dssp ---------T----HHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSC
T ss_pred ---------c----cchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCc
Confidence 0 000112334556665542 4555556655544332 2344566777777777642
Q ss_pred CCCH-HHHHHHHHHHH-------------HhCChhHHHHHHHHH------hhc-CCCC-------------------hHH
Q 010276 280 PYIM-TYMDEYAMLLK-------------VKCDYSKLSKLVHDL------LSI-DPSR-------------------PEV 319 (514)
Q Consensus 280 ~~~~-~~~~~l~~~~~-------------~~~~~~~A~~~~~~~------~~~-~~~~-------------------~~~ 319 (514)
.... ..|..+...-. ...+++.|...+... +.. .|.. ...
T Consensus 225 ~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~l 304 (679)
T 4e6h_A 225 MDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLI 304 (679)
T ss_dssp CSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHH
Confidence 2222 22221111111 112334444444332 111 1111 123
Q ss_pred HHHHHHHHhhc--C------hhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHH-HHHHHhHhhcCCh-HHHHHH
Q 010276 320 FVALSVLWERK--D------ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAV-IAFRGAQELRPDL-RSYQGL 389 (514)
Q Consensus 320 ~~~l~~~~~~~--~------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~~~~~-~~~~~l 389 (514)
|......-... . .......|++++...|..+..|+..+..+...|+.++|. ..|++++...|.. ..|...
T Consensus 305 W~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~ 384 (679)
T 4e6h_A 305 WLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSL 384 (679)
T ss_dssp HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 33333322221 1 234567899999999999999999999999999999997 9999999999987 668899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhC-----------CC-----------CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 010276 390 VHSYLQFSKVKEALYAAREAMKAM-----------PQ-----------SAKALKLVGDVHASNASGREKAKKFYESALRL 447 (514)
Q Consensus 390 ~~~~~~~~~~~~A~~~~~~~~~~~-----------p~-----------~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~ 447 (514)
+......|++++|..+|++++... |. ...+|...+.+..+. |+.+.|...|.+|++.
T Consensus 385 a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~-~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 385 SEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI-QGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence 999999999999999999999752 43 345788888888888 9999999999999987
Q ss_pred -CCCChHHHHHHHHHHHHcCC-hhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 448 -EPGYLGAALALAELHVIEGR-NGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 448 -~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
.+....++...+.+....|+ ++.|..+|+.+++..|++. .+...+......|+.+.|...|++++.
T Consensus 464 ~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 464 KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSID 532 (679)
T ss_dssp GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 44556788888888777655 8999999999999999875 777889999999999999999999985
No 91
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.84 E-value=5.3e-18 Score=149.46 Aligned_cols=227 Identities=11% Similarity=0.007 Sum_probs=132.5
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC----------hhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-c--Chh
Q 010276 267 EAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD----------YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-K--DER 333 (514)
Q Consensus 267 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~--~~~ 333 (514)
+|+..+.+++..+|++..+|...+.++...+. +++++.++..++..+|.+..+|...+.++.. + .++
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~ 127 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA 127 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHH
Confidence 34444444444444444444444444444333 3455555555555555555555555555444 3 245
Q ss_pred HHHHHHHHHHHhcccCchhHHHHHHHHHhcCC-hHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhc--------------C
Q 010276 334 GALSYAEKSIRIDERHIPGYIMKGNLLLSMKR-PEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF--------------S 397 (514)
Q Consensus 334 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------------~ 397 (514)
+++.++.++++.+|.+..+|..++.+....|. +++++.++.++++.+|.+ .+|..++.++... +
T Consensus 128 ~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~ 207 (331)
T 3dss_A 128 RELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN 207 (331)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchH
Confidence 55555555555555555555555555555555 355666666666665555 5555555555544 3
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC----------ChHHHHHHHHHHHhhCCCChHHHHHHHHHHH---H
Q 010276 398 KVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS----------GREKAKKFYESALRLEPGYLGAALALAELHV---I 464 (514)
Q Consensus 398 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~---~ 464 (514)
.++++++++.+++..+|++..+|+.+..++....| .++++++.+.++++..|++...+..++.+.. .
T Consensus 208 ~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~ 287 (331)
T 3dss_A 208 VLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDP 287 (331)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcc
Confidence 46777777777777777777777655555444323 3578888888888888887655555544433 2
Q ss_pred cCChhHHHHHHHHHHhhCCCch-HHHHHHH
Q 010276 465 EGRNGDAVSLLERYLKDWADDS-LHVKLAQ 493 (514)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~ 493 (514)
.|..++...++.+.++++|... -|..++.
T Consensus 288 ~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 288 LLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp TTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 4667788888888888888764 4444433
No 92
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.84 E-value=2.7e-19 Score=148.18 Aligned_cols=166 Identities=14% Similarity=0.048 Sum_probs=101.0
Q ss_pred HHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhc
Q 010276 319 VFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF 396 (514)
Q Consensus 319 ~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 396 (514)
.+..+|.++.. |++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|++ .++..+|.++...
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 33444444444 555555555555555555555555555666666666666666666666655554 5556666666666
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHH
Q 010276 397 SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLE 476 (514)
Q Consensus 397 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 476 (514)
|++++|...+++++...|+++.++..+|.++... |++++|+..++++++..|+++.++..+|.++...|++++|...++
T Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL-GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHc-CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666666666666666666666666665 666666666666666666666666666666666666666666666
Q ss_pred HHHhhCCCc
Q 010276 477 RYLKDWADD 485 (514)
Q Consensus 477 ~~~~~~~~~ 485 (514)
++++..|++
T Consensus 169 ~~~~~~~~~ 177 (186)
T 3as5_A 169 KANELDEGA 177 (186)
T ss_dssp HHHHHHHCC
T ss_pred HHHHcCCCc
Confidence 666665554
No 93
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.83 E-value=4.6e-19 Score=146.78 Aligned_cols=164 Identities=13% Similarity=0.084 Sum_probs=94.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 010276 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (514)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (514)
+.+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|+
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 91 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQK 91 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Confidence 44455566666666666666666655665666666666666666666666666666666666555555556666666666
Q ss_pred hhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhH
Q 010276 299 YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ 377 (514)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 377 (514)
+++|...+++++...|.++.++..+|.++.. |++++|+..+++++...|.++.++..+|.++...|++++|+..+++++
T Consensus 92 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 92 YDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666555555555555555555555555444 555555555555555555555555555555555555555555555555
Q ss_pred hhcCC
Q 010276 378 ELRPD 382 (514)
Q Consensus 378 ~~~~~ 382 (514)
+..|+
T Consensus 172 ~~~~~ 176 (186)
T 3as5_A 172 ELDEG 176 (186)
T ss_dssp HHHHC
T ss_pred HcCCC
Confidence 55444
No 94
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.83 E-value=1.8e-17 Score=146.16 Aligned_cols=238 Identities=11% Similarity=0.046 Sum_probs=207.4
Q ss_pred HHHhcCHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCC----------hHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 010276 225 CIASNDYK-GGLELFAELLQRFPNNIHILLEMAKVDAIIGK----------NDEAILNFEKVRSIDPYIMTYMDEYAMLL 293 (514)
Q Consensus 225 ~~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 293 (514)
....|.++ +|+..+..++..+|++..+|...+.++...+. +++++.++..++..+|.+..+|...+.++
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34567766 79999999999999999999999999988876 68999999999999999999999999999
Q ss_pred HHhCC--hhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cC-hhHHHHHHHHHHHhcccCchhHHHHHHHHHhc------
Q 010276 294 KVKCD--YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KD-ERGALSYAEKSIRIDERHIPGYIMKGNLLLSM------ 363 (514)
Q Consensus 294 ~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 363 (514)
...|+ +++++.++.++++.+|.+..+|...+.+... |. +++++.++.+++..+|.+..+|..++.++...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC--
T ss_pred hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccc
Confidence 99994 8999999999999999999999999998887 77 58999999999999999999999999998877
Q ss_pred --------CChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 010276 364 --------KRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF-----------SKVKEALYAAREAMKAMPQSAKALKLV 423 (514)
Q Consensus 364 --------~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~p~~~~~~~~l 423 (514)
+.++++++++.+++..+|++ .+|+.+..++... +.++++++.++++++..|++...+..+
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~ 278 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI 278 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHH
Confidence 56899999999999999999 7888776666665 468999999999999999996665555
Q ss_pred HHHHHh--cCCChHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 010276 424 GDVHAS--NASGREKAKKFYESALRLEPGYLGAALALAELH 462 (514)
Q Consensus 424 ~~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 462 (514)
+.+... ..|..++...++.+.++++|....-|..++.-+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 279 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 444322 127778999999999999999877777665544
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.83 E-value=8.6e-20 Score=149.48 Aligned_cols=167 Identities=14% Similarity=0.074 Sum_probs=132.0
Q ss_pred cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 010276 346 DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVG 424 (514)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 424 (514)
+|.....++.+|..+...|++++|+..|+++++.+|++ .++..+|.++...|++++|+..+++++...| ++..+...+
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 34556677788888888888888888888888888887 7788888888888888888888888888888 777666666
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc---hHHHHHHHHHHHhccH
Q 010276 425 DVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD---SLHVKLAQVFAATNML 501 (514)
Q Consensus 425 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~ 501 (514)
.+.....+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++..|+. .++..+|.++...|+.
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 4433211344567888888888888888888888888888888888888888888888863 3888888888888888
Q ss_pred HHHHHHHHHHhc
Q 010276 502 QEALSHYEAALR 513 (514)
Q Consensus 502 ~~A~~~~~~al~ 513 (514)
++|+..|++++.
T Consensus 161 ~~A~~~y~~al~ 172 (176)
T 2r5s_A 161 NAIASKYRRQLY 172 (176)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 888888888764
No 96
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.83 E-value=1.3e-19 Score=161.30 Aligned_cols=197 Identities=15% Similarity=0.137 Sum_probs=121.3
Q ss_pred hHHHHHHHHHHhh-cChhHHHHHHHHHHHh--------cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhc-------
Q 010276 317 PEVFVALSVLWER-KDERGALSYAEKSIRI--------DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR------- 380 (514)
Q Consensus 317 ~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------- 380 (514)
+.++..+|.++.. |++++|+.++++++.. .|....++..+|.++...|++++|+..|++++...
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 4444555554444 5555555555555544 24445566677777777777777777777776652
Q ss_pred -CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh---
Q 010276 381 -PDL-RSYQGLVHSYLQFSKVKEALYAAREAMKA--------MPQSAKALKLVGDVHASNASGREKAKKFYESALRL--- 447 (514)
Q Consensus 381 -~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--- 447 (514)
|.. .++..+|.++...|++++|+.++++++.. .|....++..+|.++... |++++|+..++++++.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ-GKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH
Confidence 222 45677777777777777777777777776 555566777777777777 7777777777777765
Q ss_pred ------CCCChHHHHHHHHHHHHcCChhHHHHH------HHHHHhhCCCc-hHHHHHHHHHHHhccHHHHHHHHHHHhcC
Q 010276 448 ------EPGYLGAALALAELHVIEGRNGDAVSL------LERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRL 514 (514)
Q Consensus 448 ------~~~~~~~~~~la~~~~~~g~~~~A~~~------~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~l 514 (514)
.+.....+..++......+....+..+ ++......|.. .++..+|.+|...|++++|+.+|++++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344445666666666655544433332 21111111222 37777888888888888888888887753
No 97
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.82 E-value=1.2e-19 Score=161.42 Aligned_cols=230 Identities=17% Similarity=0.175 Sum_probs=144.1
Q ss_pred HHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhh--------CCCCHHHHHH
Q 010276 225 CIASNDYKGGLELFAELLQR--------FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI--------DPYIMTYMDE 288 (514)
Q Consensus 225 ~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~ 288 (514)
....|++++|+..++++++. .|..+.++..+|.++...|++++|+..++++++. .|....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34678888888888888873 2445677888888888888888888888888765 2444556666
Q ss_pred HHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHH-hcccCchhHHHHHHHHHhcCChH
Q 010276 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIR-IDERHIPGYIMKGNLLLSMKRPE 367 (514)
Q Consensus 289 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 367 (514)
+|.++...|++++|+..+++++... ++... .+|....++..+|.++...|+++
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~--------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 144 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIR--------------------------EKVLGKFHPDVAKQLNNLALLCQNQGKAE 144 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHH--------------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHH--------------------------HHHcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 6777766666666666666665431 00000 02344555666666666667777
Q ss_pred HHHHHHHHhHhh--------cCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHh
Q 010276 368 AAVIAFRGAQEL--------RPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKA---------MPQSAKALKLVGDVHAS 429 (514)
Q Consensus 368 ~A~~~~~~~~~~--------~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~p~~~~~~~~l~~~~~~ 429 (514)
+|+..+++++.. .|.. .++..+|.++...|++++|+..+++++.. .+.....+...+.....
T Consensus 145 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (283)
T 3edt_B 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREES 224 (283)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhc
Confidence 777766666665 3333 45666777777777777777777777664 33444555666655554
Q ss_pred cCCCh------HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276 430 NASGR------EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKD 481 (514)
Q Consensus 430 ~~~~~------~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (514)
. +.. .++...++......|..+.++..+|.++...|++++|+.+++++++.
T Consensus 225 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 225 K-DKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp T-CCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred C-CchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 332 33333333333334555667888888888888888888888888765
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.82 E-value=2.2e-18 Score=147.19 Aligned_cols=199 Identities=14% Similarity=0.076 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChH---HHHHH
Q 010276 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM---TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPE---VFVAL 323 (514)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l 323 (514)
..++.+|..+...|++++|+..|+++++..|.++ .+++.+|.++...|++++|+..|+++++..|+++. +++.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3344444444444444444444444444444331 34444444444444444444444444444444432 33444
Q ss_pred HHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHH---HHHHHHHhcCC
Q 010276 324 SVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQ---GLVHSYLQFSK 398 (514)
Q Consensus 324 ~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~---~l~~~~~~~~~ 398 (514)
|.++.. +. .....+..++..+...|++++|+..|+++++..|++ .++. .++.+..
T Consensus 85 g~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~---- 144 (225)
T 2yhc_A 85 GLTNMALDD----------------SALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD---- 144 (225)
T ss_dssp HHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH----
T ss_pred HHHHHhhhh----------------hhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH----
Confidence 443332 10 011122334444455556666666666666666654 2221 1111110
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCChhHHHHHH
Q 010276 399 VKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL---GAALALAELHVIEGRNGDAVSLL 475 (514)
Q Consensus 399 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~ 475 (514)
........+|.++... |++++|+..|+++++..|+++ .++..+|.++.++|++++|+..+
T Consensus 145 ----------------~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 145 ----------------RLAKYEYSVAEYYTER-GAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp ----------------HHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 0012234566666666 777777777777777766664 45666777777777777777777
Q ss_pred HHHHhhCCCc
Q 010276 476 ERYLKDWADD 485 (514)
Q Consensus 476 ~~~~~~~~~~ 485 (514)
+++....|++
T Consensus 208 ~~l~~~~~~~ 217 (225)
T 2yhc_A 208 KIIAANSSNT 217 (225)
T ss_dssp HHHHHCCSCC
T ss_pred HHHHhhCCCc
Confidence 7666666654
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.81 E-value=2.4e-18 Score=146.99 Aligned_cols=198 Identities=15% Similarity=0.125 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCCh---HHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCch---hHHH
Q 010276 283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP---EVFVALSVLWER-KDERGALSYAEKSIRIDERHIP---GYIM 355 (514)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~---~~~~ 355 (514)
+..++.+|..+...|++++|+..|++++...|.++ .+++.+|.++.. |++++|+..|+++++.+|+++. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 44556666666666666666666666666655543 455566665555 6666666666666666665543 4555
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChH
Q 010276 356 KGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGRE 435 (514)
Q Consensus 356 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 435 (514)
+|.++...|.. . ...+..++..+...|++++|+..|+++++.+|+++.++..+..+.... +.
T Consensus 84 ~g~~~~~~~~~-----~----------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~-~~-- 145 (225)
T 2yhc_A 84 RGLTNMALDDS-----A----------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLK-DR-- 145 (225)
T ss_dssp HHHHHHHHHC-----------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH-HH--
T ss_pred HHHHHHhhhhh-----h----------hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH-HH--
Confidence 55555544321 0 012334445555567777777777777777777654443222221111 00
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc----hHHHHHHHHHHHhccHHHHHHHHHHH
Q 010276 436 KAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD----SLHVKLAQVFAATNMLQEALSHYEAA 511 (514)
Q Consensus 436 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a 511 (514)
.......+|.++...|++++|+..|+++++..|++ .+++.+|.++.++|++++|++.++++
T Consensus 146 ---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 146 ---------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp ---------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 01233678999999999999999999999999986 48999999999999999999999987
Q ss_pred hc
Q 010276 512 LR 513 (514)
Q Consensus 512 l~ 513 (514)
..
T Consensus 211 ~~ 212 (225)
T 2yhc_A 211 AA 212 (225)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 100
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.81 E-value=6.3e-19 Score=134.74 Aligned_cols=117 Identities=16% Similarity=0.141 Sum_probs=77.3
Q ss_pred HhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 010276 344 RIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKL 422 (514)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 422 (514)
.++|+.+..+..+|..++..|++++|+..|+++++.+|++ .+|..+|.++...|++++|+..++++++++|+++.+++.
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 4566666666666666666666666666666666666665 566666666666666666666666666666666666666
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 010276 423 VGDVHASNASGREKAKKFYESALRLEPGYLGAALALAEL 461 (514)
Q Consensus 423 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 461 (514)
+|.++... |++++|+..|+++++++|+++.++..++.+
T Consensus 87 lg~~~~~~-~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 87 KAACLVAM-REWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 66666666 666666666666666666666666666554
No 101
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.80 E-value=1.7e-17 Score=146.69 Aligned_cols=230 Identities=14% Similarity=0.102 Sum_probs=139.0
Q ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-C-ChhHHHHH
Q 010276 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG-KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK-C-DYSKLSKL 305 (514)
Q Consensus 229 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~A~~~ 305 (514)
+..++|+..+++++..+|++..+|..++.++...| .+++++..++.++..+|++..+|...+.++... + ++++++.+
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 44457777777777777777777777777777777 477777777777777777777777777777776 6 67777777
Q ss_pred HHHHhhcCCCChHHHHHHHHHHhh-cChh--------HHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHh
Q 010276 306 VHDLLSIDPSRPEVFVALSVLWER-KDER--------GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376 (514)
Q Consensus 306 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~--------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 376 (514)
+.++++.+|.+..+|...+.+... +.++ +++++++++++.+|.+..+|..++.++...++..
T Consensus 148 ~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~--------- 218 (349)
T 3q7a_A 148 IHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAE--------- 218 (349)
T ss_dssp HHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCC---------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc---------
Confidence 777777777777777776666555 4444 5566666666666666666666665555555410
Q ss_pred HhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCh--------------------HH
Q 010276 377 QELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR--------------------EK 436 (514)
Q Consensus 377 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~--------------------~~ 436 (514)
. ....++++++++++++..+|++..+|+.+..++... |.. ..
T Consensus 219 -----~------------~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (349)
T 3q7a_A 219 -----T------------SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHF-SLPLVPILPAILPYTASKLNPDIET 280 (349)
T ss_dssp -----C------------CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCCSGGGHHHHGGGTC---------
T ss_pred -----c------------chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCCcccccccccccccccccccchh
Confidence 0 000044555555555555555555555555554443 322 11
Q ss_pred HHHHHHHHHhh------CCCChHHHHHHHHHHHHcCChhHHHHHHHHHH-hhCCCc
Q 010276 437 AKKFYESALRL------EPGYLGAALALAELHVIEGRNGDAVSLLERYL-KDWADD 485 (514)
Q Consensus 437 A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~ 485 (514)
-.......+.. .+.++.++..++.+|...|+.++|.+.++... +.+|-.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir 336 (349)
T 3q7a_A 281 VEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMR 336 (349)
T ss_dssp -----CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHH
Confidence 11111111111 13556677777888877777778888777765 344443
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.80 E-value=5e-19 Score=144.90 Aligned_cols=163 Identities=9% Similarity=-0.056 Sum_probs=111.4
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 010276 248 NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLW 327 (514)
Q Consensus 248 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (514)
..+.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++..+...+.+.
T Consensus 5 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLE 83 (176)
T ss_dssp -CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHH
Confidence 3345566677777777777777777777777777777777777777777777777777777777766 665554444332
Q ss_pred hh--cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh---HHHHHHHHHHHhcCCHHHH
Q 010276 328 ER--KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQGLVHSYLQFSKVKEA 402 (514)
Q Consensus 328 ~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A 402 (514)
.. ++..+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. .++..++.++...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22 233456777777777777777777777777777777777777777777777653 3677777777777777777
Q ss_pred HHHHHHHHh
Q 010276 403 LYAAREAMK 411 (514)
Q Consensus 403 ~~~~~~~~~ 411 (514)
+..|++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.80 E-value=2.6e-18 Score=152.43 Aligned_cols=166 Identities=14% Similarity=0.031 Sum_probs=115.8
Q ss_pred ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 010276 347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGD 425 (514)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 425 (514)
|.+...+..+|..+...|++++|+..|+++++.+|++ .++..+|.++...|++++|+..+++++..+|+........+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 6666666677777777777777777777777777766 667777777777777777777777777777755555555555
Q ss_pred HHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc---hHHHHHHHHHHHhccHH
Q 010276 426 VHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD---SLHVKLAQVFAATNMLQ 502 (514)
Q Consensus 426 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~ 502 (514)
.+... ++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++..|+. .++..++.++...|+.+
T Consensus 194 ~l~~~-~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQ-AADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHH-HTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhh-cccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 56565 666777777777777777777777777777777777777777777777777664 26777777777777777
Q ss_pred HHHHHHHHHhc
Q 010276 503 EALSHYEAALR 513 (514)
Q Consensus 503 ~A~~~~~~al~ 513 (514)
+|...|++++.
T Consensus 273 ~a~~~~r~al~ 283 (287)
T 3qou_A 273 ALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 77777776653
No 104
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.80 E-value=6.9e-17 Score=142.89 Aligned_cols=186 Identities=12% Similarity=0.050 Sum_probs=157.1
Q ss_pred HHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCcHHHHH
Q 010276 175 IEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASN-DYKGGLELFAELLQRFPNNIHILL 253 (514)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~ 253 (514)
..++..+..+....+...+++......+ ..+|........++.++...| .+++++..++.++..+|++..+|.
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L------~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~ 127 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIV------RMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWH 127 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHH------HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH------HhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHH
Confidence 3344444444444444455555555555 445666667778899999999 599999999999999999999999
Q ss_pred HHHHHHHHh-C-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChh--------HHHHHHHHHhhcCCCChHHHHHH
Q 010276 254 EMAKVDAII-G-KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS--------KLSKLVHDLLSIDPSRPEVFVAL 323 (514)
Q Consensus 254 ~la~~~~~~-~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~l 323 (514)
.++.++... + +++++++.+.++++.+|.+..+|...+.++...|.++ ++++.+.++++.+|.+..+|...
T Consensus 128 hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R 207 (349)
T 3q7a_A 128 HRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWR 207 (349)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999998 8 9999999999999999999999999999999999888 99999999999999999999999
Q ss_pred HHHHhh-cC-------hhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCCh
Q 010276 324 SVLWER-KD-------ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRP 366 (514)
Q Consensus 324 ~~~~~~-~~-------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (514)
+.++.. ++ ++++++++.+++..+|.+..+|+.+..++...|+.
T Consensus 208 ~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 208 WYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 998887 54 67899999999999999999998888888777764
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.79 E-value=2.2e-18 Score=131.74 Aligned_cols=120 Identities=14% Similarity=0.115 Sum_probs=111.4
Q ss_pred HhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChH
Q 010276 375 GAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG 453 (514)
Q Consensus 375 ~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 453 (514)
++..++|+. .++..+|..+++.|++++|+..|+++++.+|+++.++..+|.++... |++++|+..|+++++++|+++.
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~ 82 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL-MEFQRALDDCDTCIRLDSKFIK 82 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhh-ccHHHHHHHHHHHHHhhhhhhH
Confidence 344578887 78999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHH
Q 010276 454 AALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVF 495 (514)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~ 495 (514)
+++.+|.++..+|++++|+..|+++++++|++. ++..++.++
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999985 888887763
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.78 E-value=1.2e-17 Score=148.02 Aligned_cols=167 Identities=13% Similarity=0.069 Sum_probs=150.4
Q ss_pred CCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHH
Q 010276 313 DPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLV 390 (514)
Q Consensus 313 ~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~ 390 (514)
.|.++..+..+|..+.. |++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+. ......+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 47788888888887777 999999999999999999999999999999999999999999999999999976 4456667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHcCCh
Q 010276 391 HSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY--LGAALALAELHVIEGRN 468 (514)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~ 468 (514)
..+...++.++|+..+++++..+|+++.+++.+|.++... |++++|+..|+++++.+|++ ..++..++.++...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~-g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQV-GRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 7788888999999999999999999999999999999998 99999999999999999998 88999999999999999
Q ss_pred hHHHHHHHHHHh
Q 010276 469 GDAVSLLERYLK 480 (514)
Q Consensus 469 ~~A~~~~~~~~~ 480 (514)
++|...|++++.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999999998875
No 107
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.77 E-value=1.9e-18 Score=135.75 Aligned_cols=115 Identities=10% Similarity=0.052 Sum_probs=97.0
Q ss_pred HHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC
Q 010276 371 IAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEP 449 (514)
Q Consensus 371 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~ 449 (514)
..+++++.++|++ .+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++... |++++|+..|+++++++|
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~-g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK-EQFQQAADLYAVAFALGK 101 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-ccHHHHHHHHHHHHhhCC
Confidence 3455667777877 77888888888888888888888888888888888888888888887 888888888888888888
Q ss_pred CChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276 450 GYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS 486 (514)
Q Consensus 450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 486 (514)
+++.+++++|.++..+|++++|+..|++++++.|+++
T Consensus 102 ~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8888888888888888888888888888888888765
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.77 E-value=1e-17 Score=150.40 Aligned_cols=198 Identities=14% Similarity=0.076 Sum_probs=120.2
Q ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHH
Q 010276 227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAI-IGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKL 305 (514)
Q Consensus 227 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 305 (514)
..|++.+|.++++++.+..+.. ++. .+++++|...|.++ +.++...|++++|+..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 4567777777777777665532 122 46777777777665 4566677777777777
Q ss_pred HHHHhhcCCCC------hHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccC------chhHHHHHHHHHhcCChHHHHHH
Q 010276 306 VHDLLSIDPSR------PEVFVALSVLWER-KDERGALSYAEKSIRIDERH------IPGYIMKGNLLLSMKRPEAAVIA 372 (514)
Q Consensus 306 ~~~~~~~~~~~------~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~ 372 (514)
+.+++...+.. ..++..+|.++.. |++++|+.+|++++.+.+.. ..++..+|.++.. |++++|+.+
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 77777654322 2345556666555 66666666666666654321 2345566666666 666666666
Q ss_pred HHHhHhhcCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCChHHHHH
Q 010276 373 FRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASGREKAKK 439 (514)
Q Consensus 373 ~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~ 439 (514)
|++++.+.|.. .++..+|.++..+|++++|+.+|++++...|++ ...+..+|.++... |++++|+.
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~-g~~~~A~~ 216 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR-ADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 66666654421 245566666666666666666666666654432 23455566666665 66666666
Q ss_pred HHHHHHhhCCCC
Q 010276 440 FYESALRLEPGY 451 (514)
Q Consensus 440 ~~~~a~~~~~~~ 451 (514)
.|++++ .+|+.
T Consensus 217 ~~~~al-~~p~~ 227 (307)
T 2ifu_A 217 CVRESY-SIPGF 227 (307)
T ss_dssp HHHHHT-TSTTS
T ss_pred HHHHHh-CCCCC
Confidence 666666 66544
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.76 E-value=2.6e-17 Score=147.76 Aligned_cols=218 Identities=12% Similarity=0.047 Sum_probs=146.9
Q ss_pred hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHH
Q 010276 262 IGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAE 340 (514)
Q Consensus 262 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~ 340 (514)
.|++++|.++++++.+..+... +...+++++|...|.++ +.++.. |++++|+..|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~---------~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSF---------MKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCS---------SSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccc---------cCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHH
Confidence 4667777777777776655320 11146777777777765 334444 77888888888
Q ss_pred HHHHhcccC------chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 010276 341 KSIRIDERH------IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAR 407 (514)
Q Consensus 341 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~ 407 (514)
+++.+.+.. ..++..+|.++...|++++|+.+|++++++.+.. .++..+|.+|.. |++++|+.+|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 877765533 3456777788888888888888888877764321 356777888777 88888888888
Q ss_pred HHHhhCCCC------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCChhHHHHHH
Q 010276 408 EAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLL 475 (514)
Q Consensus 408 ~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~ 475 (514)
+++.+.|.. ..++..+|.++... |++++|+.+|++++++.|++ ..++..+|.++...|++++|+..|
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQ-QKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 887766543 46677788888877 88888888888887765433 236677777777778888888888
Q ss_pred HHHHhhCCCc------hHHHHHHHHHHHhccHHHHHH
Q 010276 476 ERYLKDWADD------SLHVKLAQVFAATNMLQEALS 506 (514)
Q Consensus 476 ~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~ 506 (514)
++++ ..|+. .....++..+ ..|+.+.+..
T Consensus 219 ~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 219 RESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 8887 77753 1344445544 4555544433
No 110
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.76 E-value=8.7e-18 Score=143.61 Aligned_cols=194 Identities=12% Similarity=-0.023 Sum_probs=106.3
Q ss_pred hCChHHHHHHHHHHHhhCCCCHHHHHHH-------HHHHHHhCChhHHHHHHHHHhhcCCCCh-----------------
Q 010276 262 IGKNDEAILNFEKVRSIDPYIMTYMDEY-------AMLLKVKCDYSKLSKLVHDLLSIDPSRP----------------- 317 (514)
Q Consensus 262 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------- 317 (514)
.+++..|.+.|.+++..+|+..++|..+ +.++...++..+++..+++.+.+.|...
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence 4445555555555555555555555544 4444444444444444444444444322
Q ss_pred ----HHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCC---hHHHHHH
Q 010276 318 ----EVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD---LRSYQGL 389 (514)
Q Consensus 318 ----~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~l 389 (514)
++...++.++.. |++++|.+.|+.++...|.+. ..+.+|.++...+++++|+..|+.+....+. ..+++.+
T Consensus 99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L 177 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH 177 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH
Confidence 222333444444 666666666666555556555 6666666666666666666666655443211 1356666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHH
Q 010276 390 VHSYLQFSKVKEALYAAREAMKAM--PQ-SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALAL 458 (514)
Q Consensus 390 ~~~~~~~~~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 458 (514)
|.++..+|++++|+..|++++... |. .+.+++.+|.++..+ |+.++|...|++++..+|+ +.++..|
T Consensus 178 G~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~l-Gr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQ-GNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 666666666666666666665432 33 445666666666666 6666666666666666666 5554444
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.75 E-value=2.4e-17 Score=161.63 Aligned_cols=155 Identities=15% Similarity=0.098 Sum_probs=103.7
Q ss_pred cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 010276 330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAARE 408 (514)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (514)
|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|++ .++..+|.++...|++++|+..+++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566677777777777777777777777777777777777777777777777776 6677777777777777777777777
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc---CChhHHHHHHHHHHhhCCCc
Q 010276 409 AMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE---GRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 409 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~ 485 (514)
+++.+|+++.++..+|.++... |++++|+..|+++++.+|+++.++..++.++... |++++|...++++++..|++
T Consensus 83 al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 83 ASDAAPEHPGIALWLGHALEDA-GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 7777777777777777777776 7777777777777777777777777777777777 77777777777777777765
No 112
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.75 E-value=8.3e-19 Score=159.11 Aligned_cols=182 Identities=15% Similarity=0.105 Sum_probs=117.4
Q ss_pred hCChhHHHHHHHH----HhhcCCCChHHHHHHHHHHh-------------hcChhHHHHHHHHHHHhcccCchhHHHHHH
Q 010276 296 KCDYSKLSKLVHD----LLSIDPSRPEVFVALSVLWE-------------RKDERGALSYAEKSIRIDERHIPGYIMKGN 358 (514)
Q Consensus 296 ~~~~~~A~~~~~~----~~~~~~~~~~~~~~l~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 358 (514)
.+.+++|+..+.. ++.+.|.. ++...|.... .+++++|+..+++++...|..+..+..+|.
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~ 155 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGT 155 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHH
Confidence 3456677766666 66666665 3333332221 145556666666666666766777777777
Q ss_pred HHHhcCChHHHHHHHHHhHhhcCCh----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 010276 359 LLLSMKRPEAAVIAFRGAQELRPDL----------------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKL 422 (514)
Q Consensus 359 ~~~~~~~~~~A~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 422 (514)
++...|++++|+..|++++...|++ .++.++|.++...|++++|+..|++++..+|+++.+++.
T Consensus 156 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 235 (336)
T 1p5q_A 156 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR 235 (336)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 7777777777777777777776665 456666666666666666666666666666666666666
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHH-HHHHHHHHh
Q 010276 423 VGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDA-VSLLERYLK 480 (514)
Q Consensus 423 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~~~~ 480 (514)
+|.++... |++++|+..|+++++++|++..++..++.++...|++++| ...|++++.
T Consensus 236 lg~~~~~~-g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 236 RGEAHLAV-NDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666 6666666666666666666666666666666666666666 345555544
No 113
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.74 E-value=2e-17 Score=141.46 Aligned_cols=207 Identities=9% Similarity=-0.037 Sum_probs=179.7
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH-------HHHHHHhCChHHHHHHHHHHHhhCCCCH------
Q 010276 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEM-------AKVDAIIGKNDEAILNFEKVRSIDPYIM------ 283 (514)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~~~~~~~~~~------ 283 (514)
..|..|.-+ ..+++..|.+.|.+++..+|+..++|..+ +.++...++..+++..+.+.+.+.|...
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 344556665 68999999999999999999999999999 8999999999999999999999777653
Q ss_pred ---------------HHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhc-
Q 010276 284 ---------------TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRID- 346 (514)
Q Consensus 284 ---------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~- 346 (514)
++...++.++...|++++|.+.|..++...|.+. ..+.+|.++.. +++++|+..|+.+....
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d 166 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPD 166 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCC
Confidence 3455688999999999999999999999999888 88999988877 99999999999876653
Q ss_pred ccC-chhHHHHHHHHHhcCChHHHHHHHHHhHhhc--CC-h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 010276 347 ERH-IPGYIMKGNLLLSMKRPEAAVIAFRGAQELR--PD-L-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALK 421 (514)
Q Consensus 347 ~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 421 (514)
|.. ..+++.+|.++..+|++++|+..|+++.... |. . .+++.+|.++..+|+.++|...|++++..+|+ ..+..
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~ 245 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA 245 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence 221 3589999999999999999999999998654 55 3 68999999999999999999999999999999 87776
Q ss_pred HHHHH
Q 010276 422 LVGDV 426 (514)
Q Consensus 422 ~l~~~ 426 (514)
.+...
T Consensus 246 aL~~~ 250 (282)
T 4f3v_A 246 ALKDP 250 (282)
T ss_dssp HHHCT
T ss_pred HHhCC
Confidence 66544
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.74 E-value=1.9e-17 Score=130.05 Aligned_cols=114 Identities=14% Similarity=-0.001 Sum_probs=102.2
Q ss_pred HHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 010276 338 YAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS 416 (514)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 416 (514)
.+++++.++|+++.+++.+|.++...|++++|+..|++++..+|++ .+|..+|.++...|++++|+..|++++.++|++
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 4566777889999999999999999999999999999999999987 788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCh
Q 010276 417 AKALKLVGDVHASNASGREKAKKFYESALRLEPGYL 452 (514)
Q Consensus 417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 452 (514)
+.+++.+|.++... |++++|+..|++++++.|+.+
T Consensus 104 ~~~~~~lg~~~~~l-g~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 104 YTPVFHTGQCQLRL-KAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCCHH
T ss_pred cHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999998 999999999999999988764
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.74 E-value=9.3e-17 Score=157.48 Aligned_cols=163 Identities=10% Similarity=0.052 Sum_probs=129.0
Q ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHH
Q 010276 228 SNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVH 307 (514)
Q Consensus 228 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 307 (514)
.|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 37888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhc---CChHHHHHHHHHhHhhcCCh
Q 010276 308 DLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM---KRPEAAVIAFRGAQELRPDL 383 (514)
Q Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~ 383 (514)
++++.+|+++.++..+|.++.. |++++|+..++++++.+|+++.++..+|.++... |++++|+..++++++.+|+.
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999988887 8999999999999999999888899999999988 89999999999999988886
Q ss_pred -HHHHHHH
Q 010276 384 -RSYQGLV 390 (514)
Q Consensus 384 -~~~~~l~ 390 (514)
..+..++
T Consensus 162 ~~~~~~l~ 169 (568)
T 2vsy_A 162 VEPFAFLS 169 (568)
T ss_dssp SCHHHHTT
T ss_pred cChHHHhC
Confidence 5555554
No 116
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.74 E-value=6.1e-16 Score=130.40 Aligned_cols=174 Identities=14% Similarity=0.043 Sum_probs=100.8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhc----ChhHHHHHHHHHH
Q 010276 268 AILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERK----DERGALSYAEKSI 343 (514)
Q Consensus 268 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~A~~~~~~~~ 343 (514)
|+.+|+++.+. .++.+++.+|.++...+++++|+.+|+++.+. .++.+++.+|.++..+ ++++|+.+|+++.
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIRNPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 44444444443 34455555555555555555555555555442 3455555555555543 5556666666653
Q ss_pred HhcccCchhHHHHHHHHHh----cCChHHHHHHHHHhHhhcCC---hHHHHHHHHHHHh----cCCHHHHHHHHHHHHhh
Q 010276 344 RIDERHIPGYIMKGNLLLS----MKRPEAAVIAFRGAQELRPD---LRSYQGLVHSYLQ----FSKVKEALYAAREAMKA 412 (514)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~ 412 (514)
+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..|. ..+++.+|.+|.. .+++++|+.+|+++.+.
T Consensus 81 ~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 81 E--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp H--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred H--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 2 3455666666666655 56666666666666666663 2566666666666 56666666666666665
Q ss_pred CCCCHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHhhC
Q 010276 413 MPQSAKALKLVGDVHASNAS-----GREKAKKFYESALRLE 448 (514)
Q Consensus 413 ~p~~~~~~~~l~~~~~~~~~-----~~~~A~~~~~~a~~~~ 448 (514)
|.++.+++.+|.+|....| ++++|+.+|+++.+..
T Consensus 159 -~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 159 -SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp -SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred -CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 4555666666666664312 5666777776666653
No 117
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.74 E-value=1.7e-16 Score=133.83 Aligned_cols=173 Identities=14% Similarity=0.059 Sum_probs=98.9
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcC----ChHHHHHHHHH
Q 010276 301 KLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMK----RPEAAVIAFRG 375 (514)
Q Consensus 301 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~A~~~~~~ 375 (514)
+|+..|+++.+. .++.+++.+|.++.. +++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 345555555543 556666666665555 6666666666666543 345566666666655 4 56666666666
Q ss_pred hHhhcCCh-HHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHh----cCCChHHHHHHHHHH
Q 010276 376 AQELRPDL-RSYQGLVHSYLQ----FSKVKEALYAAREAMKAMP--QSAKALKLVGDVHAS----NASGREKAKKFYESA 444 (514)
Q Consensus 376 ~~~~~~~~-~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~a 444 (514)
+.+ +.+ .+++.+|.+|.. .+++++|+.+|+++.+..| +++.+++.+|.+|.. . +++++|+.+|+++
T Consensus 79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~-~d~~~A~~~~~~A 155 (212)
T 3rjv_A 79 AVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGP-EDDVKASEYFKGS 155 (212)
T ss_dssp HHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSS-CCHHHHHHHHHHH
T ss_pred HHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHH
Confidence 633 222 555666666655 5566666666666665555 235566666666655 4 5566666666666
Q ss_pred HhhCCCChHHHHHHHHHHHHc-C-----ChhHHHHHHHHHHhhC
Q 010276 445 LRLEPGYLGAALALAELHVIE-G-----RNGDAVSLLERYLKDW 482 (514)
Q Consensus 445 ~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~~~~~~ 482 (514)
++. |.++.+++.||.+|... | ++++|+.+|+++.+..
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 655 44455666666665543 2 5666666666665543
No 118
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.73 E-value=1.6e-18 Score=157.25 Aligned_cols=182 Identities=13% Similarity=0.053 Sum_probs=133.4
Q ss_pred hCChHHHHHHHHH----HHhhCCCCHHHHHHHHHHHH------------HhCChhHHHHHHHHHhhcCCCChHHHHHHHH
Q 010276 262 IGKNDEAILNFEK----VRSIDPYIMTYMDEYAMLLK------------VKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325 (514)
Q Consensus 262 ~~~~~~A~~~~~~----~~~~~~~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 325 (514)
.+.+++|+..+.. ++.+.|.. ++...|.... ..+++++|+..+++++...|..+..+..+|.
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~ 155 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGT 155 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHH
Confidence 3456777777777 67777765 3333443322 3455667777777777777777777888887
Q ss_pred HHhh-cChhHHHHHHHHHHHhcccC---------------chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHH
Q 010276 326 LWER-KDERGALSYAEKSIRIDERH---------------IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQG 388 (514)
Q Consensus 326 ~~~~-~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~ 388 (514)
++.. |++++|+..|++++...|.+ ..++.++|.++...|++++|+..|+++++++|++ .+++.
T Consensus 156 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 235 (336)
T 1p5q_A 156 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR 235 (336)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 7776 88888888888888888777 4777788888888888888888888888888776 67788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHH-HHHHHHHHh
Q 010276 389 LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKA-KKFYESALR 446 (514)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A-~~~~~~a~~ 446 (514)
+|.++...|++++|+..|+++++++|++..++..++.++... |++++| ...|++++.
T Consensus 236 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 236 RGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI-RRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888877 777777 445655554
No 119
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.71 E-value=3.6e-17 Score=128.97 Aligned_cols=113 Identities=13% Similarity=0.011 Sum_probs=65.9
Q ss_pred HHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC
Q 010276 372 AFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG 450 (514)
Q Consensus 372 ~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~ 450 (514)
.|++++..+|++ .+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++... |++++|+..|++++.++|+
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAM-GQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCC
Confidence 344555555554 45555555555555555555555555555565556666666665555 5666666666666666666
Q ss_pred ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276 451 YLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (514)
++.+++.+|.++...|++++|+..|+++++..|++
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 55666666666666666666666666666555543
No 120
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.71 E-value=2.7e-15 Score=129.96 Aligned_cols=248 Identities=15% Similarity=0.091 Sum_probs=195.3
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCh
Q 010276 221 EAQCCIASNDYKGGLELFAELLQRFPNN-IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (514)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (514)
-.+-.+-.|+|..++.-.. +..|.+ ....+.+.+++..+|++... .. ++....+...++..+. ++
T Consensus 19 ~ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~~-~~~~~~a~~~la~~~~--~~- 84 (310)
T 3mv2_B 19 NIKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ-------DP-TSKLGKVLDLYVQFLD--TK- 84 (310)
T ss_dssp HHHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC-------CS-SSTTHHHHHHHHHHHT--TT-
T ss_pred HHHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC-------CC-CCHHHHHHHHHHHHhc--cc-
Confidence 3677788899999998443 334433 45666778889999998742 11 2222334444554442 22
Q ss_pred hHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcc--cCchhHHHHHHHHHhcCChHHHHHHHHHh
Q 010276 300 SKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDE--RHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376 (514)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 376 (514)
|+..+++.+...+.++..+..+|.++.. |++++|++++.+.+..+| .+.+++...+.++..+|+.+.|.+.++++
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7889999988776777777888988887 999999999999999887 78889999999999999999999999999
Q ss_pred HhhcCC-----hHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 010276 377 QELRPD-----LRSYQGLVHS--YLQFS--KVKEALYAAREAMKAMPQ--SAKALKLVGDVHASNASGREKAKKFYESAL 445 (514)
Q Consensus 377 ~~~~~~-----~~~~~~l~~~--~~~~~--~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~ 445 (514)
.+.+|+ +.....++.. ....| ++.+|..+|+++....|+ .+..+++ ++..+ |++++|...++.++
T Consensus 163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~-g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQ-RNIAEAQGIVELLL 238 (310)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHH-TCHHHHHHHHHHHH
T ss_pred HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHc-CCHHHHHHHHHHHH
Confidence 999993 5555565544 55556 999999999999998887 3334444 78888 99999999999888
Q ss_pred hh----------CCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHH
Q 010276 446 RL----------EPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVK 490 (514)
Q Consensus 446 ~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 490 (514)
+. +|+++.++.+++.+....|+ +|.++++++.+..|+++....
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 76 58899999999999999997 899999999999999875433
No 121
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.71 E-value=7.5e-17 Score=127.14 Aligned_cols=121 Identities=10% Similarity=-0.117 Sum_probs=114.3
Q ss_pred HHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 010276 335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAM 413 (514)
Q Consensus 335 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 413 (514)
+...+++++..+|+++..++.+|.++...|++++|+..|++++..+|++ .+|..+|.++...|++++|+..|++++..+
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3456889999999999999999999999999999999999999999998 889999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHH
Q 010276 414 PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAAL 456 (514)
Q Consensus 414 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 456 (514)
|+++.+++.+|.++... |++++|+..|+++++++|+++....
T Consensus 86 p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQX-GELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp TTCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCCchHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCCCcchH
Confidence 99999999999999999 9999999999999999998876543
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.71 E-value=1.7e-16 Score=140.16 Aligned_cols=196 Identities=8% Similarity=-0.029 Sum_probs=125.5
Q ss_pred CCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHH
Q 010276 246 PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325 (514)
Q Consensus 246 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 325 (514)
|.++..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHH
Q 010276 326 LWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEAL 403 (514)
Q Consensus 326 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~ 403 (514)
++.. |++++|+..|+++++.+|+++..+......... ..++...........|.. .....++..+ .|++++|+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~ 155 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AAEREREL 155 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence 6666 777777777777777777654433322222221 111222222222233333 4444444433 57777777
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 010276 404 YAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALR 446 (514)
Q Consensus 404 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~ 446 (514)
+.++++++.+|++......++.++....+.+++|...|.++.+
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777777777777666666666665543556777777777655
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.70 E-value=1.1e-16 Score=141.39 Aligned_cols=196 Identities=12% Similarity=0.105 Sum_probs=125.1
Q ss_pred CCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHH
Q 010276 280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGN 358 (514)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 358 (514)
|.+...+..+|..+...|++++|+..|++++..+|+++.++..+|.++.. |++++|+..++++++.+|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45566777777777777777777777777777777777777777777666 77777777777777777777777777777
Q ss_pred HHHhcCChHHHHHHHHHhHhhcCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHH
Q 010276 359 LLLSMKRPEAAVIAFRGAQELRPDLR-SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKA 437 (514)
Q Consensus 359 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A 437 (514)
++...|++++|+..|+++++.+|++. .+...+.... ...++...........|.++.+...++.++ . |++++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~-~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--A-AERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--H-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--H-HHHHHH
Confidence 77777777777777777777766541 1111111111 112222222233345556666666665554 3 667777
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHc-CChhHHHHHHHHHHhh
Q 010276 438 KKFYESALRLEPGYLGAALALAELHVIE-GRNGDAVSLLERYLKD 481 (514)
Q Consensus 438 ~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~ 481 (514)
++.++++++.+|++......++.++... +.+++|.+.|.++.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 7777777777776666666666665555 5566677666666543
No 124
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.70 E-value=1.4e-15 Score=118.28 Aligned_cols=133 Identities=21% Similarity=0.278 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 010276 351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS 429 (514)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 429 (514)
.+++.+|.++...|++++|+..++++++..|++ ..+..+|.++...|++++|...+++++...|.++..+..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 356677777777778888888887777777766 6677777777777888888888888777777777777777877777
Q ss_pred cCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC
Q 010276 430 NASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD 484 (514)
Q Consensus 430 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 484 (514)
. |++++|+..++++++..|.++.++..+|.++...|++++|...+++++...|+
T Consensus 82 ~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 Q-GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp T-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred h-cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 7 78888888888887777777777777888888888888888888877777765
No 125
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.69 E-value=3.5e-16 Score=122.75 Aligned_cols=115 Identities=17% Similarity=-0.016 Sum_probs=86.4
Q ss_pred HHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC
Q 010276 371 IAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEP 449 (514)
Q Consensus 371 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~ 449 (514)
..|++++..+|++ ..++.+|..+...|++++|+..|++++..+|+++.+|..+|.++... |++++|+..|++++.++|
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL-GLYEQALQSYSYGALMDI 83 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCC
Confidence 3556666667766 66777777777777777777777777777787778888888887777 788888888888888888
Q ss_pred CChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276 450 GYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS 486 (514)
Q Consensus 450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 486 (514)
+++.+++.+|.++...|++++|+..|+++++..|++.
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 8777888888888888888888888888877777653
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.68 E-value=2.5e-15 Score=127.26 Aligned_cols=132 Identities=18% Similarity=0.033 Sum_probs=115.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 010276 351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN 430 (514)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 430 (514)
..++.+|..+...|++++|+..|++++ .|+..++..+|.++...|++++|+..+++++..+|+++.+++.+|.++...
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 346778888899999999999998885 555578889999999999999999999999999999999999999999988
Q ss_pred CCChHHHHHHHHHHHhhCCCCh----------------HHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276 431 ASGREKAKKFYESALRLEPGYL----------------GAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 431 ~~~~~~A~~~~~~a~~~~~~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (514)
|++++|+..|+++++..|++. .+++.+|.++...|++++|+..++++++..|++
T Consensus 85 -~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 85 -EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp -TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred -ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999999999999887766 888999999999999999999999999998876
No 127
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.68 E-value=2e-16 Score=124.18 Aligned_cols=125 Identities=13% Similarity=-0.018 Sum_probs=107.9
Q ss_pred HHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 010276 337 SYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ 415 (514)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 415 (514)
..+++++..+|++...++.+|..+...|++++|+..|++++..+|++ .+|..+|.++...|++++|+..|++++..+|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45677888889989999999999999999999999999999999987 78999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 010276 416 SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELH 462 (514)
Q Consensus 416 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 462 (514)
++.+++.+|.++... |++++|+..|+++++++|+++........+.
T Consensus 85 ~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 130 (142)
T 2xcb_A 85 EPRFPFHAAECHLQL-GDLDGAESGFYSARALAAAQPAHEALAARAG 130 (142)
T ss_dssp CTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred CcHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 999999999999998 9999999999999999988876655444433
No 128
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.68 E-value=6.7e-13 Score=126.14 Aligned_cols=366 Identities=10% Similarity=0.014 Sum_probs=223.1
Q ss_pred hhh-hHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhc
Q 010276 55 RDR-EYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEG 133 (514)
Q Consensus 55 ~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 133 (514)
+.| ++..|...|++++...| .|+++.+..+|++
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P----------------------------------------------~~~~e~~~~ifer 39 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYM----------------------------------------------SKDYRSLESLFGR 39 (493)
T ss_dssp ------CCHHHHHHHHHHHHH----------------------------------------------TTCHHHHHHHHHH
T ss_pred HcCcchHHHHHHHHHHHHHCC----------------------------------------------CCCHHHHHHHHHH
Confidence 456 48888888988888876 1778899999998
Q ss_pred CCCCCccHHHHHHHHHHHHhcCC-hhhHHHHHHHHHhc---CCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCc
Q 010276 134 IPSKARNLQMSLLMAKLYRNSRH-NRGAVACYKECLRH---CPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDH 209 (514)
Q Consensus 134 ~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (514)
......+.+.|..........+. .+.....|+.++.. +|.+...|............
T Consensus 40 al~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~------------------- 100 (493)
T 2uy1_A 40 CLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIED------------------- 100 (493)
T ss_dssp HSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSS-------------------
T ss_pred HhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchh-------------------
Confidence 54442378888877777776663 46677888888864 78888999887666432110
Q ss_pred CCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHH-------------HHhCChHHHHHHHHHH
Q 010276 210 LDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIH-ILLEMAKVD-------------AIIGKNDEAILNFEKV 275 (514)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~-------------~~~~~~~~A~~~~~~~ 275 (514)
..|+.+.+..+|++++...+.+.+ .|......- ...+.+..|...++.+
T Consensus 101 -----------------~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~ 163 (493)
T 2uy1_A 101 -----------------EQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQI 163 (493)
T ss_dssp -----------------HHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------hhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHH
Confidence 123445555555555553222211 111111100 0112233344444444
Q ss_pred HhhCCC-CHHHHHHHHHHHHHh--CC-----hhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhc
Q 010276 276 RSIDPY-IMTYMDEYAMLLKVK--CD-----YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRID 346 (514)
Q Consensus 276 ~~~~~~-~~~~~~~l~~~~~~~--~~-----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~ 346 (514)
....+. +...|..+...-... |- .+....+|++++...|..+..|...+..... |+.++|...|++++..
T Consensus 164 ~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~- 242 (493)
T 2uy1_A 164 QPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM- 242 (493)
T ss_dssp HHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence 433222 333454444332211 00 2345667888888778888888877776666 7778888888888887
Q ss_pred ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhc--------CC--h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 010276 347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR--------PD--L-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ 415 (514)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~--~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 415 (514)
|.+...+...+... ..+ +....+....... +. . ..|...+....+.+..+.|...|+++ ...+.
T Consensus 243 P~~~~l~~~y~~~~-e~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~ 317 (493)
T 2uy1_A 243 SDGMFLSLYYGLVM-DEE---AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGV 317 (493)
T ss_dssp CCSSHHHHHHHHHT-TCT---HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCC
T ss_pred CCcHHHHHHHHhhc-chh---HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCC
Confidence 77766665444331 111 1111111111000 11 1 45777777777788888888888888 43333
Q ss_pred CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-hHHHHHHHH
Q 010276 416 SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQV 494 (514)
Q Consensus 416 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~ 494 (514)
...+|...+.+.....++.+.|...|+.+++..|+.+..+...+......|+.+.|..+|+++ +.. .+|......
T Consensus 318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~f 393 (493)
T 2uy1_A 318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEY 393 (493)
T ss_dssp CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 556666666666655246888999999988888888888888888888888888888888887 233 467777777
Q ss_pred HHHhccHHHHHHHHHHHh
Q 010276 495 FAATNMLQEALSHYEAAL 512 (514)
Q Consensus 495 ~~~~g~~~~A~~~~~~al 512 (514)
-...|+.+.+.+.+++++
T Consensus 394 E~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 394 EFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHSCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 777788888888888775
No 129
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.68 E-value=1.5e-14 Score=125.33 Aligned_cols=245 Identities=12% Similarity=0.021 Sum_probs=147.5
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHH
Q 010276 116 SCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLF 195 (514)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~ 195 (514)
+-.+-.|+|..++....++.... .....+.+.++|..+|++.... ...| ...+...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~-~~~~~~~~~Rs~iAlg~~~~~~-------~~~~-~~~a~~~l-------------- 77 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVT-DNTLLFYKAKTLLALGQYQSQD-------PTSK-LGKVLDLY-------------- 77 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCC-CHHHHHHHHHHHHHTTCCCCCC-------SSST-THHHHHHH--------------
T ss_pred HHHHHhhHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHcCCCccCC-------CCCH-HHHHHHHH--------------
Confidence 44456899999999777764432 2346667778888888877421 1111 11122111
Q ss_pred hccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 010276 196 AQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKV 275 (514)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 275 (514)
+..+ .++ |+..+++.+...+.+...+..+|.++...|++++|++++.+.
T Consensus 78 --------------------------a~~~--~~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~ 126 (310)
T 3mv2_B 78 --------------------------VQFL--DTK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEG 126 (310)
T ss_dssp --------------------------HHHH--TTT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred --------------------------HHHh--ccc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1111 122 677777777665555666678888888888888888888888
Q ss_pred HhhCC--CCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCC----ChHHHHHHHHH--Hhh---cChhHHHHHHHHHHH
Q 010276 276 RSIDP--YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS----RPEVFVALSVL--WER---KDERGALSYAEKSIR 344 (514)
Q Consensus 276 ~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~--~~~---~~~~~A~~~~~~~~~ 344 (514)
+..+| .+.+++...+.++...|+.+.|.+.++++.+.+|+ +..+...++.. ... +++.+|..+|+++..
T Consensus 127 i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~ 206 (310)
T 3mv2_B 127 IDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ 206 (310)
T ss_dssp HTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT
T ss_pred hccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 88776 67788888888888888888888888888777763 22223333322 222 256666666666655
Q ss_pred hccc--CchhHHHHHHHHHhcCChHHHHHHHHHhHhh----------cCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010276 345 IDER--HIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL----------RPDL-RSYQGLVHSYLQFSKVKEALYAAREAMK 411 (514)
Q Consensus 345 ~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (514)
..|+ .+..+++ ++..+|++++|...++.+++. +|++ .++.+++.+....|+ +|.++++++.+
T Consensus 207 ~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 207 TFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp TSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 5554 1222222 556666666666666655544 2444 344455545555554 55555555555
Q ss_pred hCCCCHHH
Q 010276 412 AMPQSAKA 419 (514)
Q Consensus 412 ~~p~~~~~ 419 (514)
..|+++.+
T Consensus 282 ~~P~hp~i 289 (310)
T 3mv2_B 282 LDHEHAFI 289 (310)
T ss_dssp TTCCCHHH
T ss_pred hCCCChHH
Confidence 55555443
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.67 E-value=4.1e-15 Score=132.54 Aligned_cols=166 Identities=8% Similarity=0.002 Sum_probs=119.1
Q ss_pred ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---
Q 010276 347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS--- 416 (514)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--- 416 (514)
|.....+...+..+...|++++|+..++++++..|.. ..+..+|.++...|++++|+..+++++...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 3334455566777778888888888888777766543 124567777777788888888888887654433
Q ss_pred ---HHHHHHHHHHHHhcCCChHHHHHHHHHHH---hhCCCCh----HHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC--
Q 010276 417 ---AKALKLVGDVHASNASGREKAKKFYESAL---RLEPGYL----GAALALAELHVIEGRNGDAVSLLERYLKDWAD-- 484 (514)
Q Consensus 417 ---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~---~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-- 484 (514)
..++..+|.+|... |++++|+.+|++++ +..|++. .+++++|.++..+|++++|+.+++++++..++
T Consensus 152 ~~~~~~~~~lg~~y~~~-~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 152 YQNLYIENAIANIYAEN-GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp THHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 45777888888887 88888888888887 3445432 47777888888888888888888888776543
Q ss_pred -----chHHHHHHHHHHHhccHHHH-HHHHHHHhc
Q 010276 485 -----DSLHVKLAQVFAATNMLQEA-LSHYEAALR 513 (514)
Q Consensus 485 -----~~~~~~l~~~~~~~g~~~~A-~~~~~~al~ 513 (514)
..+++.+|.+|..+|++++| ..+|++|+.
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 24777888888888888888 677777764
No 131
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.67 E-value=7.6e-15 Score=114.11 Aligned_cols=130 Identities=22% Similarity=0.305 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-c
Q 010276 252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-K 330 (514)
Q Consensus 252 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 330 (514)
++.+|.++...|++++|+..++++++.+|.+...+..++.++...|++++|...+++++...|.++..+..++.++.. |
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 344444444444444444444444444444444444444444444444444444444444444444444444444333 4
Q ss_pred ChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcC
Q 010276 331 DERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP 381 (514)
Q Consensus 331 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 381 (514)
++++|+..+++++...|.++..+..+|.++...|++++|...+++++..+|
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 444444444444444444444444444444444444444444444444444
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=1.9e-16 Score=152.81 Aligned_cols=166 Identities=8% Similarity=0.008 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhcccCchhHHHHHHHHHhcCC----------hHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcC--CHH
Q 010276 334 GALSYAEKSIRIDERHIPGYIMKGNLLLSMKR----------PEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFS--KVK 400 (514)
Q Consensus 334 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~--~~~ 400 (514)
+|+..+++++..+|++..+|+.++.++...|+ +++++..++++++.+|++ .+|...+.++...+ +++
T Consensus 47 eal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~ 126 (567)
T 1dce_A 47 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA 126 (567)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHH
Confidence 45555555555555555555555555555555 555555555555555555 55555555555555 445
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc--------------
Q 010276 401 EALYAAREAMKAMPQSAKALKLVGDVHASNAS-GREKAKKFYESALRLEPGYLGAALALAELHVIE-------------- 465 (514)
Q Consensus 401 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-------------- 465 (514)
++++.+.++++.+|.+..+|...+.+.... | .++++++++.++++.+|.+..+|...+.++...
T Consensus 127 ~el~~~~k~l~~d~~N~~aW~~R~~~l~~l-~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~ 205 (567)
T 1dce_A 127 RELELCARFLEADERNFHCWDYRRFVAAQA-AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE 205 (567)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-CCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCH
T ss_pred HHHHHHHHHHhhccccccHHHHHHHHHHHc-CCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccH
Confidence 555555555555555555555555555555 4 555555555555555555555555555555553
Q ss_pred CChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhcc
Q 010276 466 GRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNM 500 (514)
Q Consensus 466 g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~ 500 (514)
+.+++|++++.+++..+|++. +|+.++.++...|+
T Consensus 206 ~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 206 NVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 334566666666666666553 55555555555544
No 133
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.66 E-value=3.8e-16 Score=130.50 Aligned_cols=142 Identities=15% Similarity=0.041 Sum_probs=69.8
Q ss_pred cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-----------------HHHHHHHHH
Q 010276 330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-----------------RSYQGLVHS 392 (514)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~l~~~ 392 (514)
++++++.+.++......+.....+..+|..+...|++++|+..|++++...|.+ .++..+|.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 97 (198)
T 2fbn_A 18 YFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 97 (198)
T ss_dssp ----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 444555544444444444445555555666666666666666666665554443 234444555
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHH
Q 010276 393 YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAV 472 (514)
Q Consensus 393 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 472 (514)
+...|++++|+..+++++..+|+++.+++.+|.++... |++++|+..|+++++++|+++.++..++.++...++..++.
T Consensus 98 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 98 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYF-GFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555544 55555555555555555555555555555544444444433
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=7e-16 Score=148.79 Aligned_cols=184 Identities=10% Similarity=0.049 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC----------hhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-c--Ch
Q 010276 266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD----------YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-K--DE 332 (514)
Q Consensus 266 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~--~~ 332 (514)
++|++.+.+++..+|++..+|...+.++...|+ +++++..+++++..+|++..+|...+.++.. + ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 455666666666666666666666666666665 6666666666666666666666666666665 5 45
Q ss_pred hHHHHHHHHHHHhcccCchhHHHHHHHHHhcC-ChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhc--------------
Q 010276 333 RGALSYAEKSIRIDERHIPGYIMKGNLLLSMK-RPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF-------------- 396 (514)
Q Consensus 333 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~-------------- 396 (514)
++++..++++++.+|.+..+|..++.+....| .++++++++.++++.+|++ .+|..++.++...
T Consensus 126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~ 205 (567)
T 1dce_A 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE 205 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCH
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccH
Confidence 77777777777777777777777777777777 6777777777777777776 6677777776653
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHH------------HHHHHHHHHhhCCC
Q 010276 397 SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREK------------AKKFYESALRLEPG 450 (514)
Q Consensus 397 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~------------A~~~~~~a~~~~~~ 450 (514)
+.++++++++.+++..+|++..+|+.++.++... +++++ |+..|.+++.++|.
T Consensus 206 ~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~-~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 206 NVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred HHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcC-CCccceeeeeeccCCceEEEEeccceecccc
Confidence 5679999999999999999999999999999987 77655 55667777777765
No 135
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=4e-15 Score=114.13 Aligned_cols=112 Identities=14% Similarity=0.081 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 010276 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHV 463 (514)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 463 (514)
..+..+|..+...|++++|+..|++++..+|+++.++..+|.++... |++++|+..|+++++++|+++.+++.+|.++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL-MSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666665 66666666666666666666666666666666
Q ss_pred HcCChhHHHHHHHHHHhhC------CCch-HHHHHHHHHH
Q 010276 464 IEGRNGDAVSLLERYLKDW------ADDS-LHVKLAQVFA 496 (514)
Q Consensus 464 ~~g~~~~A~~~~~~~~~~~------~~~~-~~~~l~~~~~ 496 (514)
..|++++|+..|+++++.. |++. ++..++.+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 6666666666666666666 5543 5555554443
No 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.65 E-value=1.1e-14 Score=117.71 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 010276 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE 465 (514)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 465 (514)
+..+|.++...|++++|+..+++++...|+++.++..+|.++... |++++|+..++++++.+|+++.++..+|.++...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 444455555555555555555555555555555555555555554 5555555555555555555555555555555555
Q ss_pred CChhHHHHHHHHHHhhCCCch-HH--HHHHHHHHHhccHHHHHHHHHHH
Q 010276 466 GRNGDAVSLLERYLKDWADDS-LH--VKLAQVFAATNMLQEALSHYEAA 511 (514)
Q Consensus 466 g~~~~A~~~~~~~~~~~~~~~-~~--~~l~~~~~~~g~~~~A~~~~~~a 511 (514)
|++++|+..++++++..|++. ++ ..++..+...|++++|+..++++
T Consensus 95 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 95 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 555555555555555555442 33 22222344445555555555443
No 137
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=7.9e-15 Score=112.43 Aligned_cols=117 Identities=12% Similarity=0.072 Sum_probs=110.2
Q ss_pred ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 010276 347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGD 425 (514)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 425 (514)
|..+..+..+|..+...|++++|+..|+++++.+|++ .++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 3456788999999999999999999999999999998 889999999999999999999999999999999999999999
Q ss_pred HHHhcCCChHHHHHHHHHHHhhC------CCChHHHHHHHHHHHH
Q 010276 426 VHASNASGREKAKKFYESALRLE------PGYLGAALALAELHVI 464 (514)
Q Consensus 426 ~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~la~~~~~ 464 (514)
++... |++++|+..|+++++++ |+++.++..++.+..+
T Consensus 81 ~~~~~-~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAV-KEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHH-hCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999 99999999999999999 9999999888887654
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.64 E-value=3.4e-15 Score=122.24 Aligned_cols=126 Identities=19% Similarity=0.239 Sum_probs=98.5
Q ss_pred HHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHhcCCCh--H
Q 010276 360 LLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDV-HASNASGR--E 435 (514)
Q Consensus 360 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~--~ 435 (514)
+...|++++|+..+++++..+|++ .++..+|.++...|++++|+..|++++..+|+++.++..+|.+ +... |++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~-~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQA-SQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT-TTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc-CCcchH
Confidence 455677888888888888888876 7788888888888888888888888888888888888888888 6666 777 8
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276 436 KAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS 486 (514)
Q Consensus 436 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 486 (514)
+|+..|+++++.+|+++.++..+|.++...|++++|+..++++++..|++.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 888888888888888888888888888888888888888888888887763
No 139
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.63 E-value=4.4e-15 Score=113.58 Aligned_cols=108 Identities=15% Similarity=0.085 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCh-------HHHH
Q 010276 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL-------GAAL 456 (514)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~ 456 (514)
.++..+|..++..|++++|+..|+++++++|+++.++.++|.++... |++++|+..|+++++++|++. .++.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEE-KKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh-hhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34677888888888888888888888888888888888888888887 888888888888888776553 3677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHH
Q 010276 457 ALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLA 492 (514)
Q Consensus 457 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 492 (514)
.+|.++..+|++++|++.|++++...|+++....+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~ 123 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVK 123 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHHH
Confidence 788888888888888888888888888766544443
No 140
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.63 E-value=1e-15 Score=127.84 Aligned_cols=154 Identities=10% Similarity=0.003 Sum_probs=119.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH------------
Q 010276 351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSA------------ 417 (514)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------------ 417 (514)
......+......|+++++.+.+.......+.. ..+..+|..+...|++++|+..|++++...|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (198)
T 2fbn_A 5 HHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK 84 (198)
T ss_dssp -----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH
T ss_pred ccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 334445666677788888888887666555554 6788899999999999999999999999888876
Q ss_pred ----HHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHH
Q 010276 418 ----KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLA 492 (514)
Q Consensus 418 ----~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~ 492 (514)
.++..+|.++... |++++|+.+++++++.+|+++.+++.+|.++...|++++|+..|+++++..|++. ++..++
T Consensus 85 ~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 163 (198)
T 2fbn_A 85 NIEISCNLNLATCYNKN-KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 163 (198)
T ss_dssp HHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 8889999999998 9999999999999999999999999999999999999999999999999999875 888899
Q ss_pred HHHHHhccHHHHH
Q 010276 493 QVFAATNMLQEAL 505 (514)
Q Consensus 493 ~~~~~~g~~~~A~ 505 (514)
.++...|+..++.
T Consensus 164 ~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 164 LCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHH
Confidence 9999988888777
No 141
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.62 E-value=2e-14 Score=116.29 Aligned_cols=132 Identities=18% Similarity=0.072 Sum_probs=119.2
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 010276 350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHA 428 (514)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (514)
+..+..+|.++...|++++|+..|++++...|++ .++..+|.++...|++++|+..+++++..+|+++.++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 5678889999999999999999999999999987 789999999999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHhhCCCChHHHHH--HHHHHHHcCChhHHHHHHHHHHhhC
Q 010276 429 SNASGREKAKKFYESALRLEPGYLGAALA--LAELHVIEGRNGDAVSLLERYLKDW 482 (514)
Q Consensus 429 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~~~~~~ 482 (514)
.. |++++|+..|+++++.+|+++.++.. ++..+...|++++|+..+.+.....
T Consensus 93 ~~-~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 93 AL-GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh-ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 98 99999999999999999999888854 4444888899999999999876653
No 142
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=99.62 E-value=9.1e-15 Score=111.00 Aligned_cols=146 Identities=36% Similarity=0.528 Sum_probs=113.6
Q ss_pred CCchHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCC-ChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchh
Q 010276 1 MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGET-SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQ 79 (514)
Q Consensus 1 ~~~~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 79 (514)
|-.++++++.+++.|+|++|+.++++++++...++.. ++...+++++.+|++++.+|+|.+|...|+++++....-++.
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3468999999999999999999999999998877765 899999999999999999999999999999999875433322
Q ss_pred hhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHH
Q 010276 80 NSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYR 152 (514)
Q Consensus 80 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 152 (514)
..... .+ +.....++.+. .+.+.+++|+++.|+.++|++++|+..++.|+....++.+...+|++|.
T Consensus 100 ~s~~~--~~--~~~ss~p~s~~--~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 100 SKVRP--ST--GNSASTPQSQC--LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLYK 166 (167)
T ss_dssp ---------------------C--CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHCC
T ss_pred CCccc--cc--cccCCCccccc--ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHhc
Confidence 21110 00 00011111111 2357899999999999999999999999999999999999999999874
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.62 E-value=6.4e-15 Score=120.58 Aligned_cols=126 Identities=17% Similarity=0.239 Sum_probs=109.0
Q ss_pred cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHH-HHhcCCH--HHHHHH
Q 010276 330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHS-YLQFSKV--KEALYA 405 (514)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~-~~~~~~~--~~A~~~ 405 (514)
|++++|+..+++++..+|.++.++..+|.++...|++++|+..|+++++.+|++ .++..+|.+ +...|++ ++|+..
T Consensus 24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~ 103 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAM 103 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 778888889999999999888899999999999999999999999999998887 778888988 7788988 999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHH
Q 010276 406 AREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAAL 456 (514)
Q Consensus 406 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 456 (514)
+++++..+|+++.++..+|.++... |++++|+..|+++++.+|+++....
T Consensus 104 ~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 104 IDKALALDSNEITALMLLASDAFMQ-ANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhhCCCCccHHH
Confidence 9999999999999999999999998 9999999999999999988765443
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.62 E-value=1.5e-14 Score=111.71 Aligned_cols=121 Identities=21% Similarity=0.188 Sum_probs=64.2
Q ss_pred ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 010276 347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGD 425 (514)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 425 (514)
|.++..+..+|..+...|++++|+..|++++...|++ .++..+|.++...|++++|+..+++++...|+++.++..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 3334445555555555555555555555555555544 445555555555555555555555555555555555555555
Q ss_pred HHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCh
Q 010276 426 VHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRN 468 (514)
Q Consensus 426 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 468 (514)
++... |++++|+..|+++++.+|+++.++..++.++...|++
T Consensus 89 ~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSL-NKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHh-CCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 55554 5555555555555555555555555555555555443
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-14 Score=112.17 Aligned_cols=115 Identities=16% Similarity=0.046 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 010276 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHV 463 (514)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 463 (514)
.++..+|.++...|++++|+..+++++..+|++..++..+|.++... |++++|+..++++++.+|+++.++..+|.++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL-LEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 44555555566666666666666666655565566666666666555 66666666666666666665566666666666
Q ss_pred HcCChhHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhc
Q 010276 464 IEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATN 499 (514)
Q Consensus 464 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 499 (514)
..|++++|+..++++++..|++ .++..++.++...|
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 6666666666666666655554 25555555555544
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.60 E-value=3e-14 Score=110.36 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=115.1
Q ss_pred cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 010276 346 DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVG 424 (514)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 424 (514)
.|..+..+..+|.++...|++++|+..|++++...|++ .++..+|.++...|++++|+..+++++...|+++.++..+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 45567789999999999999999999999999999987 88999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q 010276 425 DVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGR 467 (514)
Q Consensus 425 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 467 (514)
.++... |++++|+..|+++++.+|++..++..++.++...|+
T Consensus 92 ~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAM-KDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHH-hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999998 999999999999999999999999999999988774
No 147
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.60 E-value=7.7e-14 Score=118.01 Aligned_cols=132 Identities=16% Similarity=0.186 Sum_probs=107.0
Q ss_pred HHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 010276 215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLK 294 (514)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 294 (514)
...++.+|..+...|++++|+..|++++ .| ++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 3445677899999999999999999885 33 67899999999999999999999999999999999999999999999
Q ss_pred HhCChhHHHHHHHHHhhcCCCCh----------------HHHHHHHHHHhh-cChhHHHHHHHHHHHhcccC
Q 010276 295 VKCDYSKLSKLVHDLLSIDPSRP----------------EVFVALSVLWER-KDERGALSYAEKSIRIDERH 349 (514)
Q Consensus 295 ~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~ 349 (514)
..|++++|+..+++++...|.+. .++..+|.++.. |++++|+..++++++..|++
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999999998888766 666666666555 66666666666666666654
No 148
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.60 E-value=9.5e-14 Score=123.69 Aligned_cols=165 Identities=12% Similarity=-0.010 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHH
Q 010276 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT------YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVA 322 (514)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 322 (514)
...+...+..+...|++++|++.+.++++..|.... .+..+|.++...|
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 129 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV------------------------- 129 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSS-------------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCC-------------------------
Confidence 344445556666666666666666666665554321 2233344444444
Q ss_pred HHHHHhhcChhHHHHHHHHHHHhcccC------chhHHHHHHHHHhcCChHHHHHHHHHhH---hhcCCh-----HHHHH
Q 010276 323 LSVLWERKDERGALSYAEKSIRIDERH------IPGYIMKGNLLLSMKRPEAAVIAFRGAQ---ELRPDL-----RSYQG 388 (514)
Q Consensus 323 l~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~-----~~~~~ 388 (514)
++++|+..+++++...+.. ..++..+|.+|...|++++|+.+|++++ +..|+. .++.+
T Consensus 130 --------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~n 201 (293)
T 2qfc_A 130 --------DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN 201 (293)
T ss_dssp --------CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHh
Confidence 4555555555554433221 2355666777777777777777777766 333432 35667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhcCCChHHH-HHHHHHHHhh
Q 010276 389 LVHSYLQFSKVKEALYAAREAMKAMPQ------SAKALKLVGDVHASNASGREKA-KKFYESALRL 447 (514)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~~~~A-~~~~~~a~~~ 447 (514)
+|.+|..+|++++|+.++++++...++ ...+++.+|.++... |++++| ..+|++++.+
T Consensus 202 lg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~-g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL-EYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHH
Confidence 777777777777777777777665432 156677777777776 777777 6667777654
No 149
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.60 E-value=1.8e-15 Score=143.19 Aligned_cols=149 Identities=16% Similarity=0.129 Sum_probs=125.4
Q ss_pred cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh----------------HHHHHHHHHH
Q 010276 330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----------------RSYQGLVHSY 393 (514)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------~~~~~l~~~~ 393 (514)
+++++|+..++.++...|.....+..+|..++..|++++|+..|+++++..|.+ .+|.++|.++
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777788888888888888888888888888888888888775 5788999999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHH
Q 010276 394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVS 473 (514)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 473 (514)
..+|++++|+..|++++.++|+++.+++.+|.++... |++++|+..|+++++++|++..++..++.++...|++++|..
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~-g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM-NEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 999999999999999999999999999999999999888764
Q ss_pred -HHHHHH
Q 010276 474 -LLERYL 479 (514)
Q Consensus 474 -~~~~~~ 479 (514)
.+.+++
T Consensus 407 ~~~~~~f 413 (457)
T 1kt0_A 407 RIYANMF 413 (457)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 344433
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.60 E-value=1.9e-14 Score=116.01 Aligned_cols=110 Identities=18% Similarity=0.121 Sum_probs=67.4
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 010276 349 HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH 427 (514)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 427 (514)
++..+..+|.++...|++++|+..|+++++.+|++ .++..+|.++...|++++|+..+++++..+|+++.+++.+|.++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34455566666666666666666666666666655 55666666666666666666666666666666666666666666
Q ss_pred HhcCCChHHHHHHHHHHHhhCCCChHHHHHHH
Q 010276 428 ASNASGREKAKKFYESALRLEPGYLGAALALA 459 (514)
Q Consensus 428 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 459 (514)
... |++++|+..|+++++++|+++.++...+
T Consensus 90 ~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 90 FDM-ADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHT-TCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHc-cCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 665 6666666666666666666655444433
No 151
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.59 E-value=3.2e-15 Score=141.47 Aligned_cols=145 Identities=12% Similarity=0.036 Sum_probs=132.9
Q ss_pred hcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHH
Q 010276 362 SMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---------------AKALKLVGD 425 (514)
Q Consensus 362 ~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~ 425 (514)
..+++++|+..|+.++...|+. ..+..+|..+...|++++|+..|++++...|.+ ..++.++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 5567888888888888888887 789999999999999999999999999999998 699999999
Q ss_pred HHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHH
Q 010276 426 VHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEA 504 (514)
Q Consensus 426 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A 504 (514)
++... |++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|++++++.|++. ++..++.++...|++++|
T Consensus 326 ~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 326 CYLKL-REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999999999999999999999999999999999885 999999999999999988
Q ss_pred HHH
Q 010276 505 LSH 507 (514)
Q Consensus 505 ~~~ 507 (514)
...
T Consensus 405 ~~~ 407 (457)
T 1kt0_A 405 DRR 407 (457)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 152
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.59 E-value=3.5e-14 Score=109.58 Aligned_cols=117 Identities=13% Similarity=0.041 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 010276 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHV 463 (514)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 463 (514)
..+..+|..+...|++++|+..+++++...|+++.++..+|.++... |++++|+..++++++.+|+++.++..+|.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKL-GNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-hchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccH
Q 010276 464 IEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNML 501 (514)
Q Consensus 464 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 501 (514)
..|++++|+..++++++..|++. ++..++.++...|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999875 999999999998875
No 153
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.59 E-value=2.6e-14 Score=127.37 Aligned_cols=157 Identities=10% Similarity=0.001 Sum_probs=100.9
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhhcCCh-H------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHH
Q 010276 356 KGNLLLSMKRPEAAVIAFRGAQELRPDL-R------SYQGLVHSYLQFSKVKEALYAAREAMKAMPQS------AKALKL 422 (514)
Q Consensus 356 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~ 422 (514)
.+..+...|++++|...+++++...+.. . .+..+|.++...|++++|+..+++++...+.. ..++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3455666677777777777666655443 1 12246666666667777777777777643322 235677
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhh---C----CCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-------hHH
Q 010276 423 VGDVHASNASGREKAKKFYESALRL---E----PGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-------SLH 488 (514)
Q Consensus 423 l~~~~~~~~~~~~~A~~~~~~a~~~---~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~ 488 (514)
+|.+|... |++++|+.+|+++++. . +....+++++|.++..+|++++|+.+++++++..+.. .++
T Consensus 161 lg~~y~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 161 IANIYAEN-GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 77777776 7777777777777742 1 1123366777777777777777777777777765321 467
Q ss_pred HHHHHHHHHhc-cHHHHHHHHHHHhc
Q 010276 489 VKLAQVFAATN-MLQEALSHYEAALR 513 (514)
Q Consensus 489 ~~l~~~~~~~g-~~~~A~~~~~~al~ 513 (514)
+.+|.+|..+| ++++|+++|++|+.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 77777777777 35777777777764
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.59 E-value=5.8e-14 Score=113.18 Aligned_cols=117 Identities=14% Similarity=0.122 Sum_probs=102.2
Q ss_pred CchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 010276 211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA 290 (514)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 290 (514)
.+.....++.+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|.++.++..+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 44555666778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 010276 291 MLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLW 327 (514)
Q Consensus 291 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (514)
.++...|++++|+..|++++..+|+++..+...+...
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 9999999999999999999999999888776666543
No 155
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.58 E-value=2.9e-11 Score=114.94 Aligned_cols=364 Identities=7% Similarity=-0.039 Sum_probs=238.7
Q ss_pred HHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCC-
Q 010276 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGE- 123 (514)
Q Consensus 45 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~- 123 (514)
..+..+-..+-.|+++.+...|++++...| +.+.+........ ..+.
T Consensus 16 ~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~-------------------------------~~~~~ 63 (493)
T 2uy1_A 16 AIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVR-------------------------------KVSQK 63 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHH-------------------------------HHC--
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHH-------------------------------HhCch
Confidence 334444444444899999999999999877 4444443322222 1111
Q ss_pred HHHHHHHHhc----CCCCCccHHHHHHHHHHHH----hcCChhhHHHHHHHHHhcCCCCHHH-HHHHHHhccCcccHhHH
Q 010276 124 TKAAIVEMEG----IPSKARNLQMSLLMAKLYR----NSRHNRGAVACYKECLRHCPFFIEA-ITALAELGATPKDIISL 194 (514)
Q Consensus 124 ~~~A~~~~~~----~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~l~~~p~~~~~-~~~l~~~~~~~~~~~~~ 194 (514)
.+.....++. +...+.+...|......+. .+|+.+.+..+|++++..-+.+..- |..........+
T Consensus 64 ~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~----- 138 (493)
T 2uy1_A 64 KFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELN----- 138 (493)
T ss_dssp --CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhc-----
Confidence 1111222222 3334667788888877755 3567889999999999953333322 221111100000
Q ss_pred HhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhCC---------
Q 010276 195 FAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPN-NIHILLEMAKVDAIIGK--------- 264 (514)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~--------- 264 (514)
... .........+.+..|...++.+....+. +...|...... ..++
T Consensus 139 -----------------~~~-----~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~--E~~~~~~~~~~~~ 194 (493)
T 2uy1_A 139 -----------------KIT-----GKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDL--EMENGMKLGGRPH 194 (493)
T ss_dssp -----------------HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHH--HHTCTTCCCHHHH
T ss_pred -----------------ccc-----HHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH--HhcCCccCcchhh
Confidence 000 0011111224555666666666554332 44455444333 2232
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHH
Q 010276 265 NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIR 344 (514)
Q Consensus 265 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~ 344 (514)
.+.....|++++...|..+..|..++..+...|+.++|..++++++.. |.+...+...+.....+ +....+.....
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~---~~~~~l~~~~~ 270 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEE---AVYGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCT---HHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchh---HHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999 99887777655442111 11111111110
Q ss_pred ----------hcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh--HHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 010276 345 ----------IDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL--RSYQGLVHSYLQFS-KVKEALYAAREAMK 411 (514)
Q Consensus 345 ----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~-~~~~A~~~~~~~~~ 411 (514)
..+....+|...+....+.+..+.|...|+++ . .|.. ..|...+.+-...+ +.+.|..+|+.+++
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 11222356788888888888999999999999 4 3432 56666676666656 69999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 010276 412 AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480 (514)
Q Consensus 412 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (514)
..|+++..+...+...... |+.+.|...|+++ +.....|..........|+.+.+...++++++
T Consensus 349 ~~~~~~~~~~~yid~e~~~-~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 349 KHPDSTLLKEEFFLFLLRI-GDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999888888888887 9999999999997 45678888888888999999999999999886
No 156
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.58 E-value=2.3e-14 Score=108.41 Aligned_cols=100 Identities=22% Similarity=0.173 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 010276 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI 464 (514)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 464 (514)
.++.+|..+...|++++|+..++++++.+|+++.+|+.+|.++... |++++|+..|+++++++|+++.++..+|.++..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN-EKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3566677777777777777777777777777777777777777776 777777777777777777777777777777777
Q ss_pred cCChhHHHHHHHHHHhhCCCc
Q 010276 465 EGRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~~~~ 485 (514)
.|++++|+..++++++..|++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCcCC
Confidence 777777777777777776653
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.58 E-value=3.3e-14 Score=108.64 Aligned_cols=109 Identities=18% Similarity=0.168 Sum_probs=87.1
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------HHHH
Q 010276 349 HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS-------AKAL 420 (514)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~ 420 (514)
...++..+|..++..|++++|+..|+++++++|++ .+|.++|.+|..+|++++|+..++++++++|++ ..++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 34567778888888888888888888888888887 778888888888888888888888888877765 3577
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHH
Q 010276 421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALA 459 (514)
Q Consensus 421 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 459 (514)
..+|.++... |++++|+..|++++...|+ ++....+.
T Consensus 87 ~~lg~~~~~~-~~~~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 87 SRAGNAFQKQ-NDLSLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 8888888888 8999999999998888775 45444433
No 158
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.57 E-value=2.3e-14 Score=110.51 Aligned_cols=66 Identities=12% Similarity=-0.006 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhh-------CCCChHHH----HHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276 419 ALKLVGDVHASNASGREKAKKFYESALRL-------EPGYLGAA----LALAELHVIEGRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 419 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (514)
+|.++|.++..+ |++++|+..|++++++ +|+++.+| +++|.++..+|++++|+..|++++++.|++
T Consensus 59 a~~n~g~al~~L-gr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 59 CHAGLAEALAGL-RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 677777777776 7777777777777777 77777777 777777777777777777777777777665
No 159
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.57 E-value=8.1e-15 Score=113.02 Aligned_cols=111 Identities=14% Similarity=0.038 Sum_probs=94.1
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCC-------h------HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----
Q 010276 350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD-------L------RSYQGLVHSYLQFSKVKEALYAAREAMKA---- 412 (514)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 412 (514)
...+...|..++..|++++|+..|+++++++|+ + .+|.++|.++..+|++++|+..+++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 445677788888888888888888888888887 3 27999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 010276 413 ---MPQSAKAL----KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAEL 461 (514)
Q Consensus 413 ---~p~~~~~~----~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 461 (514)
+|+++.+| +++|.++..+ |++++|+..|+++++++|++..+...+..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~l-gr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGL-GRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHC-CCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 99999999 9999999998 999999999999999999886554444433
No 160
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.57 E-value=1.8e-13 Score=104.60 Aligned_cols=113 Identities=19% Similarity=0.268 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 010276 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI 464 (514)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 464 (514)
.+..+|.++...|++++|+..+++++...|+++.++..+|.++... |++++|+..++++++..|.++.++..+|.++..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555554 555555555555555555555555555555555
Q ss_pred cCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHh
Q 010276 465 EGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAAT 498 (514)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 498 (514)
.|++++|+..++++++..|++. ++..++.++...
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 90 QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 5555555555555555555442 445555554443
No 161
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.56 E-value=2.6e-13 Score=120.81 Aligned_cols=156 Identities=13% Similarity=0.055 Sum_probs=76.7
Q ss_pred HHHHHHhCChhHHHHHHHHHhhcCCCChHH------HHHHHHHHhh-cChhHHHHHHHHHHHhcccCch------hHHHH
Q 010276 290 AMLLKVKCDYSKLSKLVHDLLSIDPSRPEV------FVALSVLWER-KDERGALSYAEKSIRIDERHIP------GYIMK 356 (514)
Q Consensus 290 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~------~~~~~ 356 (514)
+..+...|++++|...+++++...+..+.. +..+|.++.. +++++|+.++++++...+.... ++..+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 445555666666666666666555544432 1123333333 4555555555555554332221 35555
Q ss_pred HHHHHhcCChHHHHHHHHHhHhhc---CCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHH
Q 010276 357 GNLLLSMKRPEAAVIAFRGAQELR---PDL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS------AKALKL 422 (514)
Q Consensus 357 ~~~~~~~~~~~~A~~~~~~~~~~~---~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~ 422 (514)
|.+|...|++++|+.+|+++++.. |.+ .++.++|.+|..+|++++|+.+++++++..+.. +.+++.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 666666666666666666555321 111 234555555555555555555555555443222 444555
Q ss_pred HHHHHHhcCCC-hHHHHHHHHHHHh
Q 010276 423 VGDVHASNASG-REKAKKFYESALR 446 (514)
Q Consensus 423 l~~~~~~~~~~-~~~A~~~~~~a~~ 446 (514)
+|.++... |+ +++|+.+|++++.
T Consensus 242 lg~~~~~~-g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKL-EYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCcHHHHHHHHHHHHH
Confidence 55555554 42 3555555555443
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.56 E-value=1e-13 Score=107.97 Aligned_cols=116 Identities=15% Similarity=-0.000 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 010276 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHV 463 (514)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 463 (514)
..+..+|.++...|++++|+..|++++..+|+++.++..+|.++... |++++|+..++++++.+|+++.+++.+|.++.
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM-QQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 56777777777778888888888888877887788888888888877 88888888888888888887788888888888
Q ss_pred HcCChhHHHHHHHHHHhhCCC-----c-hHHHHHHHHHHHhcc
Q 010276 464 IEGRNGDAVSLLERYLKDWAD-----D-SLHVKLAQVFAATNM 500 (514)
Q Consensus 464 ~~g~~~~A~~~~~~~~~~~~~-----~-~~~~~l~~~~~~~g~ 500 (514)
..|++++|+..|+++++..|+ + .+...+..+..+.+.
T Consensus 89 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 89 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877765 2 355555555554443
No 163
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.56 E-value=2.9e-13 Score=103.36 Aligned_cols=120 Identities=22% Similarity=0.318 Sum_probs=111.3
Q ss_pred cccC-chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 010276 346 DERH-IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLV 423 (514)
Q Consensus 346 ~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 423 (514)
+|.. +..+..+|.++...|++++|+..+++++...|++ .++..+|.++...|++++|+..+++++...|+++.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4554 6788999999999999999999999999999987 7899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 010276 424 GDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG 466 (514)
Q Consensus 424 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 466 (514)
|.++... |++++|+..++++++.+|+++.++..++.++...|
T Consensus 84 a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 84 GNAYYKQ-GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHh-cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999998 99999999999999999999999999999987765
No 164
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.56 E-value=6.4e-14 Score=117.50 Aligned_cols=168 Identities=16% Similarity=0.042 Sum_probs=112.1
Q ss_pred hcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcC------Ch-HHHHHHHHHHHhcCCHHH
Q 010276 329 RKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP------DL-RSYQGLVHSYLQFSKVKE 401 (514)
Q Consensus 329 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~-~~~~~l~~~~~~~~~~~~ 401 (514)
.|++++|...++......+..+.++..+|.++...|++++|+..+++++.... .. .++..+|.++...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 37777777755444332234566777888888888888888888888777422 11 457777888888888888
Q ss_pred HHHHHHHHHhh---CCCC----HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC--CC----hHHHHHHHHHHHHcCCh
Q 010276 402 ALYAAREAMKA---MPQS----AKALKLVGDVHASNASGREKAKKFYESALRLEP--GY----LGAALALAELHVIEGRN 468 (514)
Q Consensus 402 A~~~~~~~~~~---~p~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~--~~----~~~~~~la~~~~~~g~~ 468 (514)
|+..+++++.. .+++ ..++..+|.++... |++++|+..+++++...+ .+ ..++..+|.++...|++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHF-GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888887776 3322 45577778888877 888888888888776532 11 22456778888888888
Q ss_pred hHHHHHHHHHHhhCCCchHHHHHHHHHHH
Q 010276 469 GDAVSLLERYLKDWADDSLHVKLAQVFAA 497 (514)
Q Consensus 469 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 497 (514)
++|...+++++++..........+.+...
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 192 (203)
T 3gw4_A 164 LEAQQHWLRARDIFAELEDSEAVNELMTR 192 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHhc
Confidence 88888888887776666433444444433
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.55 E-value=6.5e-14 Score=109.15 Aligned_cols=120 Identities=19% Similarity=0.157 Sum_probs=102.6
Q ss_pred hcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 010276 345 IDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLV 423 (514)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 423 (514)
.+|.++..+..+|.++...|++++|+..|++++..+|++ .++..+|.++...|++++|+..+++++..+|+++.+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 456678888999999999999999999999999999987 7889999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHc
Q 010276 424 GDVHASNASGREKAKKFYESALRLEPG-----YLGAALALAELHVIE 465 (514)
Q Consensus 424 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~la~~~~~~ 465 (514)
|.++... |++++|+..|+++++.+|+ +..+...+..+..+.
T Consensus 84 ~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 84 GQCQLEM-ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHH-hhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 9999999999999998887 566666666665443
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.55 E-value=7.8e-14 Score=105.50 Aligned_cols=101 Identities=14% Similarity=0.118 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 010276 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (514)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (514)
.+.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 46679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhhcCCCChH
Q 010276 298 DYSKLSKLVHDLLSIDPSRPE 318 (514)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~ 318 (514)
++++|+..++++++.+|+++.
T Consensus 100 ~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHC-------
T ss_pred CHHHHHHHHHHHHHhCcCCCC
Confidence 999999999999999887653
No 167
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.54 E-value=7.3e-14 Score=112.30 Aligned_cols=113 Identities=21% Similarity=0.194 Sum_probs=67.1
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHhHhh------------------cCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010276 350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQEL------------------RPDL-RSYQGLVHSYLQFSKVKEALYAAREAM 410 (514)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------------~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (514)
+..+...|..++..|++++|+..|++++.. +|.. .++.++|.++...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445677788888888888888888888776 3333 345555555555555555555555555
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCh-HHHHHHHHHHH
Q 010276 411 KAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL-GAALALAELHV 463 (514)
Q Consensus 411 ~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~ 463 (514)
.++|+++.+++.+|.++... |++++|+..|+++++++|+++ .+...++.+..
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~-g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAA-WKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHH-hcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 55555555555555555555 555555555555555555554 33444444443
No 168
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.53 E-value=1.3e-13 Score=110.81 Aligned_cols=118 Identities=13% Similarity=0.060 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 010276 384 RSYQGLVHSYLQFSKVKEALYAAREAMKA------------------MPQSAKALKLVGDVHASNASGREKAKKFYESAL 445 (514)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~ 445 (514)
..+...|..++..|++++|+..|++++.. +|.+..++.++|.++... |++++|+..+++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-~~~~~A~~~~~~al 90 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI-GDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHH
Confidence 46889999999999999999999999998 677789999999999999 99999999999999
Q ss_pred hhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch--HHHHHHHHHHHhccHH
Q 010276 446 RLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS--LHVKLAQVFAATNMLQ 502 (514)
Q Consensus 446 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~ 502 (514)
+++|+++.+++.+|.++..+|++++|+..|++++++.|++. +...++.+....++..
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~ 149 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKK 149 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999975 5667777777665543
No 169
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.53 E-value=5.3e-13 Score=100.70 Aligned_cols=109 Identities=19% Similarity=0.115 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 010276 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI 464 (514)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 464 (514)
.+..+|..+...|++++|+..+++++...|+++.++..+|.++... |++++|+..++++++.+|+++.++..+|.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK-GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 4555566666666666666666666666666666666666666665 666666666666666666666666666666666
Q ss_pred cCChhHHHHHHHHHHhhCCCch-HHHHHHHH
Q 010276 465 EGRNGDAVSLLERYLKDWADDS-LHVKLAQV 494 (514)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~ 494 (514)
.|++++|...++++++..|++. ++..++.+
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 6666666666666666665543 44444444
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.53 E-value=1.1e-14 Score=138.26 Aligned_cols=135 Identities=19% Similarity=0.097 Sum_probs=116.3
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 010276 349 HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH 427 (514)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 427 (514)
.+..+..+|..+...|++++|+..|+++++.+|++ .++..+|.++..+|++++|+..++++++.+|+++.+++.+|.++
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 35567778888999999999999999999999987 78999999999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHH--HHHcCChhHHHHHHH-----------HHHhhCCC
Q 010276 428 ASNASGREKAKKFYESALRLEPGYLGAALALAEL--HVIEGRNGDAVSLLE-----------RYLKDWAD 484 (514)
Q Consensus 428 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~~~~~~~~ 484 (514)
... |++++|+..|+++++++|+++.++..++.+ +...|++++|++.++ +++...|+
T Consensus 85 ~~~-g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 85 MAL-GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HHH-TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred HHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 998 999999999999999999999999888888 888899999999999 77766654
No 171
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.52 E-value=1.1e-12 Score=98.85 Aligned_cols=111 Identities=13% Similarity=0.104 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 010276 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK 296 (514)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (514)
.++..|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 34566888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 010276 297 CDYSKLSKLVHDLLSIDPSRPEVFVALSVLW 327 (514)
Q Consensus 297 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (514)
|++++|...+++++...|+++.++..++.+.
T Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999988888887664
No 172
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.51 E-value=1.8e-13 Score=114.80 Aligned_cols=152 Identities=15% Similarity=0.097 Sum_probs=85.9
Q ss_pred HhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHH------hcccCchhHHHHHHHHHhcCChH
Q 010276 295 VKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIR------IDERHIPGYIMKGNLLLSMKRPE 367 (514)
Q Consensus 295 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 367 (514)
..|++++|.+.++.+....+....++..+|.++.. |++++|+..+++++. ..|....++..+|.++...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 45666666664443333222445566666665555 666666666666666 23334455666666666666666
Q ss_pred HHHHHHHHhHhh---cCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHhcCCC
Q 010276 368 AAVIAFRGAQEL---RPDL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ--S----AKALKLVGDVHASNASG 433 (514)
Q Consensus 368 ~A~~~~~~~~~~---~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~~~~ 433 (514)
+|+..+++++.. .++. .++..+|.++...|++++|+..+++++...+. + ..++..+|.++... |+
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~ 162 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE-KN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC-cC
Confidence 666666666655 2211 24566666666666666666666666654321 1 12345666666666 66
Q ss_pred hHHHHHHHHHHHhh
Q 010276 434 REKAKKFYESALRL 447 (514)
Q Consensus 434 ~~~A~~~~~~a~~~ 447 (514)
+++|+..+++++++
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666654
No 173
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.51 E-value=2.5e-14 Score=129.66 Aligned_cols=135 Identities=16% Similarity=0.139 Sum_probs=72.9
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010276 350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL------------------RSYQGLVHSYLQFSKVKEALYAAREAMK 411 (514)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (514)
...+..+|..++..|++++|+..|++++...|++ .++.++|.++...|++++|+..+++++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555543 2788889999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHH-HHHcCChhHHHHHHHHHHhhCCCc
Q 010276 412 AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAEL-HVIEGRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 412 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~~~~~~~~~ 485 (514)
.+|+++.+++.+|.++... |++++|+..|+++++++|+++.++..++.+ ....+..+++...|.+++...|++
T Consensus 259 ~~p~~~~a~~~lg~a~~~~-g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 259 EEEKNPKALFRRGKAKAEL-GQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp HCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHTTC----------------------------------------
T ss_pred hCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 9998888999999998888 899999999999988888888888888888 445567788888888888888765
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.50 E-value=8.9e-13 Score=101.38 Aligned_cols=98 Identities=17% Similarity=0.193 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC---hHHHHHHHH
Q 010276 387 QGLVHSYLQFSKVKEALYAAREAMKAMPQSA---KALKLVGDVHASNASGREKAKKFYESALRLEPGY---LGAALALAE 460 (514)
Q Consensus 387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~ 460 (514)
+.+|.++...|++++|+..+++++..+|+++ .+++.+|.++... |++++|+..|+++++.+|++ +.+++.+|.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYAT-RNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3344444444444444444444444444443 3444444444444 44444444444444444444 444444444
Q ss_pred HHHHcCChhHHHHHHHHHHhhCCCc
Q 010276 461 LHVIEGRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 461 ~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (514)
++...|++++|+..|+++++..|++
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 4444444444444444444444443
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=6.8e-13 Score=104.79 Aligned_cols=115 Identities=17% Similarity=0.088 Sum_probs=72.1
Q ss_pred ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 010276 347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKL 422 (514)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 422 (514)
|.....+..+|..+...|++++|+..|+++++..|++ .++..+|.++...|++++|+..+++++..+|+++.+++.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 4445556666666666666666666666666666653 445666666666666666666666666666666666666
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 010276 423 VGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELH 462 (514)
Q Consensus 423 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 462 (514)
+|.++... |++++|+..|+++++.+|+++.++..++.+.
T Consensus 105 ~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQALEKL-GRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHH-TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 66666665 6666666666666666666666655555543
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.49 E-value=1.4e-12 Score=100.33 Aligned_cols=117 Identities=19% Similarity=0.086 Sum_probs=104.9
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHH
Q 010276 350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLR----SYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---AKALKL 422 (514)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~ 422 (514)
+..++.+|..+...|++++|+..|+++++..|++. +++.+|.++...|++++|+..+++++..+|++ +.+++.
T Consensus 2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 34678899999999999999999999999999864 89999999999999999999999999999999 899999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q 010276 423 VGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGR 467 (514)
Q Consensus 423 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 467 (514)
+|.++... |++++|+..|+++++..|+++.+......+....++
T Consensus 82 la~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 82 LGLSQYGE-GKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG 125 (129)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence 99999998 999999999999999999998887776666554443
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.49 E-value=4.1e-13 Score=103.53 Aligned_cols=116 Identities=14% Similarity=0.077 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC-------hHHHH
Q 010276 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY-------LGAAL 456 (514)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~ 456 (514)
..+..+|.++...|++++|+..+++++...|+++.++..+|.++... |++++|+.++++++...|++ +.++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK-GDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 45677777777777888888888887777777777788888888777 88888888888887776665 67777
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHhcc
Q 010276 457 ALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNM 500 (514)
Q Consensus 457 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 500 (514)
.+|.++...|++++|+..++++++..|+......++.+....++
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888877766677777776665543
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.48 E-value=4.1e-13 Score=100.27 Aligned_cols=101 Identities=14% Similarity=0.034 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC--ChHHHHHHHHH
Q 010276 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG--YLGAALALAEL 461 (514)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~ 461 (514)
..+..+|.++...|++++|+..++++++..|++..++..+|.++... |++++|+..|+++++.+|+ ++.++..+|.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNL-ERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 45566666666666666666666666666666666777777777766 7777777777777777777 67777777777
Q ss_pred HHHc-CChhHHHHHHHHHHhhCCCc
Q 010276 462 HVIE-GRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 462 ~~~~-g~~~~A~~~~~~~~~~~~~~ 485 (514)
+... |++++|++.+++++...|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCC
Confidence 7777 77777777777777766653
No 179
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-12 Score=103.10 Aligned_cols=116 Identities=16% Similarity=0.071 Sum_probs=107.0
Q ss_pred CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHH
Q 010276 381 PDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAAL 456 (514)
Q Consensus 381 ~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 456 (514)
|.. ..+..+|..+...|++++|+..|++++...|++ ..++..+|.++... |++++|+..++++++.+|+++.+++
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL-EDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHhhCccCHHHHH
Confidence 444 679999999999999999999999999999998 89999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHH
Q 010276 457 ALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAA 497 (514)
Q Consensus 457 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~ 497 (514)
.+|.++...|++++|+..|+++++..|++. ++..++.+...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 999999999999999999999999999875 77777766543
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.47 E-value=5.2e-14 Score=133.67 Aligned_cols=124 Identities=15% Similarity=0.101 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 010276 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI 464 (514)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 464 (514)
++..+|..+...|++++|+..|+++++.+|+++.++..+|.++... |++++|+..++++++++|+++.+++.+|.++..
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3566788889999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhhCCCch-HHHHHHHH--HHHhccHHHHHHHHH
Q 010276 465 EGRNGDAVSLLERYLKDWADDS-LHVKLAQV--FAATNMLQEALSHYE 509 (514)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~--~~~~g~~~~A~~~~~ 509 (514)
+|++++|+..++++++..|++. ++..++.+ +...|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999874 88888888 889999999999998
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.45 E-value=9.1e-13 Score=101.53 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=99.4
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------HHHH
Q 010276 349 HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS-------AKAL 420 (514)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~ 420 (514)
.+..+..+|.++...|++++|+..|++++...|++ .++..+|.++...|++++|+..+++++...|++ +.++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 35677888899999999999999999999888877 778888999999999999999999999888776 8889
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 010276 421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG 466 (514)
Q Consensus 421 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 466 (514)
..+|.++... |++++|+..|+++++..| ++..+..++.+....+
T Consensus 83 ~~la~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 83 ARIGNSYFKE-EKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-ccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 9999999998 999999999999999988 5778888877766544
No 182
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.44 E-value=2.2e-12 Score=96.26 Aligned_cols=106 Identities=11% Similarity=0.071 Sum_probs=90.6
Q ss_pred cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHH
Q 010276 346 DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ--SAKALKL 422 (514)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~ 422 (514)
+|+++..+..+|.++...|++++|+..|+++++..|.+ .++..+|.++...|++++|+..++++++..|+ +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57778888888888888888888888888888888877 77888888888888888888888888888888 8888888
Q ss_pred HHHHHHhcC-CChHHHHHHHHHHHhhCCCCh
Q 010276 423 VGDVHASNA-SGREKAKKFYESALRLEPGYL 452 (514)
Q Consensus 423 l~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~ 452 (514)
+|.++.. . |++++|+.++++++...|.++
T Consensus 82 l~~~~~~-~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRY-IEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTT-CSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHhhcccCCC
Confidence 8888876 5 788888888888888888653
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.44 E-value=1.6e-12 Score=118.91 Aligned_cols=139 Identities=15% Similarity=0.089 Sum_probs=92.4
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 010276 350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS 429 (514)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 429 (514)
...+..+|..+...|++++|+..|+++++..|... +....++.....|.+..++.++|.++..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------------AAAEDADGAKLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------------HHSCHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------------cccChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777777777777777777777776433210 0001122223556666777777777777
Q ss_pred cCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHH
Q 010276 430 NASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALS 506 (514)
Q Consensus 430 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~ 506 (514)
. |++++|+.+++++++++|+++.+++.+|.++..+|++++|+..|++++++.|++. ++..++.++...++.+++..
T Consensus 286 ~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 286 M-SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp T-TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-cCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 7777777777777777777777777777777777777777777777777777664 67777777777777766654
No 184
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.44 E-value=3e-12 Score=121.17 Aligned_cols=213 Identities=11% Similarity=0.041 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHh
Q 010276 283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLS 362 (514)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (514)
|.+....|..+...|++++|++.|.++++..|.........+. ........ ..++..+|.+|..
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~----------~~al~~l~~~y~~ 67 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASV------DDKRRNEQ----------ETSILELGQLYVT 67 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSB------CSHHHHHH----------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHH------HHHHhhhH----------HHHHHHHHHHHHH
Confidence 3445566777777777777777777777776654321110000 00001111 1124556666666
Q ss_pred cCChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHh
Q 010276 363 MKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMP------QSAKALKLVGDVHAS 429 (514)
Q Consensus 363 ~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~ 429 (514)
.|++++|++.+.+++...+.. .+...++.++...|++++|+.++++++...+ ....++..+|.++..
T Consensus 68 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 147 (434)
T 4b4t_Q 68 MGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ 147 (434)
T ss_dssp HTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 666666666666666554332 1234456666666667777776666665322 224566667777777
Q ss_pred cCCChHHHHHHHHHHHhh------CCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCC---Cc-----hHHHHHHHHH
Q 010276 430 NASGREKAKKFYESALRL------EPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWA---DD-----SLHVKLAQVF 495 (514)
Q Consensus 430 ~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~-----~~~~~l~~~~ 495 (514)
. |++++|...+++++.. .|....++..++.++...|++++|...+++++...+ .+ .++..+|.++
T Consensus 148 ~-g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~ 226 (434)
T 4b4t_Q 148 K-KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILH 226 (434)
T ss_dssp H-TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT
T ss_pred c-cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 6 7777777777666653 122244666677777777777777777777665532 11 2555566666
Q ss_pred HHhccHHHHHHHHHHHh
Q 010276 496 AATNMLQEALSHYEAAL 512 (514)
Q Consensus 496 ~~~g~~~~A~~~~~~al 512 (514)
...|++++|..+|.+++
T Consensus 227 ~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 227 CEDKDYKTAFSYFFESF 243 (434)
T ss_dssp TSSSCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 66777777777766664
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.44 E-value=4.2e-13 Score=101.06 Aligned_cols=92 Identities=14% Similarity=0.107 Sum_probs=48.7
Q ss_pred cCChHHHHHHHHHhHhh---cCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHH
Q 010276 363 MKRPEAAVIAFRGAQEL---RPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAK 438 (514)
Q Consensus 363 ~~~~~~A~~~~~~~~~~---~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~ 438 (514)
.|++++|+..|+++++. +|++ .++..+|.++...|++++|+..++++++.+|+++.+++.+|.++... |++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNL-GRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc-CCHHHHH
Confidence 35555555555555555 2433 44555555555555555555555555555555555555555555555 5555555
Q ss_pred HHHHHHHhhCCCChHHH
Q 010276 439 KFYESALRLEPGYLGAA 455 (514)
Q Consensus 439 ~~~~~a~~~~~~~~~~~ 455 (514)
..+++++...|+++.+.
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 55555555555554443
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.44 E-value=1.3e-12 Score=119.48 Aligned_cols=139 Identities=16% Similarity=0.079 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHH
Q 010276 317 PEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYL 394 (514)
Q Consensus 317 ~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~ 394 (514)
...+..+|..+.. |++++|+..|+++++..|..+ +....+......|.. .++.++|.++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888777 999999999999998765532 111233444455555 67888899999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHH
Q 010276 395 QFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSL 474 (514)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 474 (514)
..|++++|+..++++++.+|+++.+++.+|.++... |++++|+..|+++++++|++..++..++.++...++++++...
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGL-KEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998899999999999988 9999999999999999998888888899888888888777643
No 187
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.43 E-value=6.1e-13 Score=102.32 Aligned_cols=89 Identities=18% Similarity=0.147 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCh----------HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 010276 397 SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR----------EKAKKFYESALRLEPGYLGAALALAELHVIEG 466 (514)
Q Consensus 397 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 466 (514)
+.+++|+..++++++.+|+++.+|+++|.++... +++ ++|+..|+++++++|++..+++++|.+|..+|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l-~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLEL-SQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh-cccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 3445555555555555555555555555555544 432 35555566666666655555556665555543
Q ss_pred -----------ChhHHHHHHHHHHhhCCCch
Q 010276 467 -----------RNGDAVSLLERYLKDWADDS 486 (514)
Q Consensus 467 -----------~~~~A~~~~~~~~~~~~~~~ 486 (514)
++++|+.+|+++++++|++.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 56666666666666666654
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.42 E-value=4.1e-13 Score=121.70 Aligned_cols=137 Identities=9% Similarity=-0.008 Sum_probs=68.8
Q ss_pred hHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHhCChHHHHHHHHHHH
Q 010276 214 RWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI-----------------HILLEMAKVDAIIGKNDEAILNFEKVR 276 (514)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~~~ 276 (514)
....++.+|..++..|++++|+..|++++...|++. .++..+|.++...|++++|+..|++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344456678888888888888888888888888765 256666666666666666666666666
Q ss_pred hhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh--cChhHHHHHHHHHHHhcccCc
Q 010276 277 SIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER--KDERGALSYAEKSIRIDERHI 350 (514)
Q Consensus 277 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~A~~~~~~~~~~~~~~~ 350 (514)
+.+|.+..+++.+|.++...|++++|+..|++++.++|+++.++..++.+... +..+++...|.+++...|.++
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 66666666666666666666666666666666666666666666666655333 445555666666666655543
No 189
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.2e-11 Score=117.12 Aligned_cols=211 Identities=13% Similarity=0.061 Sum_probs=127.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 010276 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (514)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (514)
+..|..+...|+|++|++.|.++++..|.........+......+ .. ..++..+|.+|...|+
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~----------~~al~~l~~~y~~~~~ 70 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRN-------EQ----------ETSILELGQLYVTMGA 70 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHH-------HH----------HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhh-------hH----------HHHHHHHHHHHHHCCC
Confidence 344666666666666666666666665543211000000000000 00 1134455555555555
Q ss_pred hhHHHHHHHHHhhcCCCChH------HHHHHHHHHhh-cChhHHHHHHHHHHHhcccC------chhHHHHHHHHHhcCC
Q 010276 299 YSKLSKLVHDLLSIDPSRPE------VFVALSVLWER-KDERGALSYAEKSIRIDERH------IPGYIMKGNLLLSMKR 365 (514)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 365 (514)
+++|.+.+.+++...+.... +...++.++.. |++++|+.++++++...+.. ..++..+|.++...|+
T Consensus 71 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 150 (434)
T 4b4t_Q 71 KDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQ 150 (434)
T ss_dssp HHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccC
Confidence 55555555555544333221 22334444444 77777777777777654332 3456778888888888
Q ss_pred hHHHHHHHHHhHhhcCC------h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CC----HHHHHHHHHHHHhcC
Q 010276 366 PEAAVIAFRGAQELRPD------L-RSYQGLVHSYLQFSKVKEALYAAREAMKAMP---QS----AKALKLVGDVHASNA 431 (514)
Q Consensus 366 ~~~A~~~~~~~~~~~~~------~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~----~~~~~~l~~~~~~~~ 431 (514)
+++|+..+++++..... . .++..++.+|...|++++|...+++++...+ +. ...+...|.++...
T Consensus 151 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~- 229 (434)
T 4b4t_Q 151 YKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCED- 229 (434)
T ss_dssp HHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSS-
T ss_pred hHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHH-
Confidence 88888888887765221 1 4678888888888888888888888876532 22 34566777777777
Q ss_pred CChHHHHHHHHHHHhh
Q 010276 432 SGREKAKKFYESALRL 447 (514)
Q Consensus 432 ~~~~~A~~~~~~a~~~ 447 (514)
+++++|..+|.++++.
T Consensus 230 ~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 230 KDYKTAFSYFFESFES 245 (434)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH
Confidence 8888888888888764
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.40 E-value=4.2e-13 Score=101.07 Aligned_cols=91 Identities=16% Similarity=0.133 Sum_probs=83.5
Q ss_pred hcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHH
Q 010276 395 QFSKVKEALYAAREAMKA---MPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDA 471 (514)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 471 (514)
..|++++|+..|+++++. +|+++.++..+|.++... |++++|+..|+++++.+|+++.+++.+|.++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL-GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 468999999999999999 688899999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCch
Q 010276 472 VSLLERYLKDWADDS 486 (514)
Q Consensus 472 ~~~~~~~~~~~~~~~ 486 (514)
+..+++++...|++.
T Consensus 81 ~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 81 VELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHhCCCcH
Confidence 999999999999875
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.40 E-value=1.9e-12 Score=103.96 Aligned_cols=131 Identities=18% Similarity=0.138 Sum_probs=70.4
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------
Q 010276 350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS------ 416 (514)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------ 416 (514)
..++..+|.++...|++++|+..++++++..+.. .++..+|.++...|++++|+..+++++...+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 3455666666666666666666666666654322 245556666666666666666666665543321
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276 417 AKALKLVGDVHASNASGREKAKKFYESALRLEPG------YLGAALALAELHVIEGRNGDAVSLLERYLKD 481 (514)
Q Consensus 417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (514)
..++..+|.++... |++++|+..++++++..+. ...++..+|.++...|++++|+..++++++.
T Consensus 89 ~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLL-QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33445555555555 5555555555555543211 1224444555555555555555555555444
No 192
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.39 E-value=2e-12 Score=99.46 Aligned_cols=93 Identities=13% Similarity=0.054 Sum_probs=82.2
Q ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCh----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 010276 227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKN----------DEAILNFEKVRSIDPYIMTYMDEYAMLLKVK 296 (514)
Q Consensus 227 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (514)
+.+.+++|+..++++++.+|++++++..+|.++...+++ ++|+..|+++++++|++..+++.+|.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 447899999999999999999999999999999998875 5999999999999999999999999999987
Q ss_pred C-----------ChhHHHHHHHHHhhcCCCChHH
Q 010276 297 C-----------DYSKLSKLVHDLLSIDPSRPEV 319 (514)
Q Consensus 297 ~-----------~~~~A~~~~~~~~~~~~~~~~~ 319 (514)
| ++++|+.+|+++++++|++...
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 5 7888888888888888877543
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.39 E-value=4.2e-12 Score=101.98 Aligned_cols=129 Identities=15% Similarity=0.154 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC------
Q 010276 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEPGY------ 451 (514)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~------ 451 (514)
.++..+|.++...|++++|+..+++++...+.. ..++..+|.++... |++++|+.+++++++..+..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL-GEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 467778888888888888888888888765432 24677888888887 88888888888887764332
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC---c----hHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 452 LGAALALAELHVIEGRNGDAVSLLERYLKDWAD---D----SLHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~----~~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
..++..+|.++...|++++|+..++++++..+. . .++..+|.++...|++++|..+++++++
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 446777888888888888888888888776422 1 3677788888888888888888888765
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.26 E-value=6.8e-11 Score=88.52 Aligned_cols=99 Identities=14% Similarity=0.030 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 010276 401 EALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480 (514)
Q Consensus 401 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (514)
+|+..|+++++.+|+++.+++.+|.++... |++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEH-EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467778888888888888888888888887 8888888888888888888888888888888888888888888888888
Q ss_pred hCCCc---hHHHHHHHHHHHhcc
Q 010276 481 DWADD---SLHVKLAQVFAATNM 500 (514)
Q Consensus 481 ~~~~~---~~~~~l~~~~~~~g~ 500 (514)
..|+. .....+...+...|+
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhcc
Confidence 77643 244455555554443
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.25 E-value=6.9e-12 Score=93.39 Aligned_cols=93 Identities=13% Similarity=0.035 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC------hHHHHH
Q 010276 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALA 457 (514)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~ 457 (514)
..+..+|.++...|++++|+..|++++..+|+++.++..+|.++... |++++|+..|+++++++|++ ..+++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL-GEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777776 77777777777777777776 667777
Q ss_pred HHHHHHHcCChhHHHHHHHH
Q 010276 458 LAELHVIEGRNGDAVSLLER 477 (514)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~ 477 (514)
+|.++...|+++.|+..+++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 77777777777666655443
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.20 E-value=3.5e-10 Score=80.43 Aligned_cols=81 Identities=21% Similarity=0.320 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 010276 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHV 463 (514)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 463 (514)
..+..+|.++...|++++|+..+++++...|+++.++..+|.++... |++++|+..|+++++.+|+++.++..+|.++.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34555566666666666666666666666666666666666666655 66666666666666666666666666665555
Q ss_pred Hc
Q 010276 464 IE 465 (514)
Q Consensus 464 ~~ 465 (514)
..
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.19 E-value=1.4e-10 Score=86.77 Aligned_cols=81 Identities=21% Similarity=0.191 Sum_probs=52.3
Q ss_pred HHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 010276 368 AAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALR 446 (514)
Q Consensus 368 ~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~ 446 (514)
+|+..|+++++.+|++ .++..+|.++...|++++|+..+++++..+|+++.++..+|.++... |++++|+..|+++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ-GDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 4556666666666665 55666666666666666666666666666666666666666666666 666666666666666
Q ss_pred hCC
Q 010276 447 LEP 449 (514)
Q Consensus 447 ~~~ 449 (514)
..|
T Consensus 82 ~~~ 84 (115)
T 2kat_A 82 AAQ 84 (115)
T ss_dssp HHH
T ss_pred hcc
Confidence 655
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.16 E-value=3.5e-10 Score=80.43 Aligned_cols=84 Identities=19% Similarity=0.256 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHH
Q 010276 415 QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQ 493 (514)
Q Consensus 415 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~ 493 (514)
.++..++.+|.++... |++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++..|++. ++..+|.
T Consensus 7 ~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4578899999999998 9999999999999999999999999999999999999999999999999999875 9999999
Q ss_pred HHHHhc
Q 010276 494 VFAATN 499 (514)
Q Consensus 494 ~~~~~g 499 (514)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 988765
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.16 E-value=6.5e-11 Score=88.00 Aligned_cols=92 Identities=10% Similarity=0.026 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHH
Q 010276 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI------MTYMDEYA 290 (514)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~ 290 (514)
.++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|++ ..++..+|
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 85 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLE 85 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 345568888888888888888888888888888888888888888888888888888888888887 77888888
Q ss_pred HHHHHhCChhHHHHHHHH
Q 010276 291 MLLKVKCDYSKLSKLVHD 308 (514)
Q Consensus 291 ~~~~~~~~~~~A~~~~~~ 308 (514)
.++...|+++.|+..+++
T Consensus 86 ~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 86 LAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHhHhhhHhHHHH
Confidence 888888877777655443
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.14 E-value=2.3e-10 Score=82.91 Aligned_cols=88 Identities=15% Similarity=0.197 Sum_probs=66.0
Q ss_pred hCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc---hHH
Q 010276 412 AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD---SLH 488 (514)
Q Consensus 412 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~ 488 (514)
.+|+++.+++.+|.++... |++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++++.|.. ...
T Consensus 2 ~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKH-DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp ---CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence 3678888888888888887 888888888888888888888888888888888888888888888888876543 344
Q ss_pred HHHHHHHHHhcc
Q 010276 489 VKLAQVFAATNM 500 (514)
Q Consensus 489 ~~l~~~~~~~g~ 500 (514)
..+..++...+.
T Consensus 81 ~~l~~~l~~~~~ 92 (100)
T 3ma5_A 81 SELQDAKLKAEG 92 (100)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHccc
Confidence 555555554443
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.08 E-value=3.1e-10 Score=82.28 Aligned_cols=90 Identities=18% Similarity=0.227 Sum_probs=64.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 010276 387 QGLVHSYLQFSKVKEALYAAREAMKAMPQSAK-ALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE 465 (514)
Q Consensus 387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 465 (514)
+..|..+...|++++|+..++++++.+|+++. +++.+|.++... |++++|+..|+++++.+|+++.++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKL-GDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 45677777777777777777777777777777 777777777777 77888888888887777777776633
Q ss_pred CChhHHHHHHHHHHhhCCCc
Q 010276 466 GRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 466 g~~~~A~~~~~~~~~~~~~~ 485 (514)
+.+.+++..|+++....|++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHHhccCccc
Confidence 45566666666666655543
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.06 E-value=3.2e-09 Score=81.95 Aligned_cols=111 Identities=18% Similarity=0.140 Sum_probs=86.9
Q ss_pred CChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCChHHHHH
Q 010276 364 KRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS----NASGREKAKK 439 (514)
Q Consensus 364 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~A~~ 439 (514)
+++++|+..|+++.+..+.. +. +|.+|...+..++|+.+|+++.+. .++.+.+.+|.+|.. . +++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~-a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~-~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF-GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVK-KDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT-HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSC-CCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHh-hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCC-ccHHHHHH
Confidence 46788888888887765333 23 888888888888888888888775 567888888888887 5 78888888
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHH----cCChhHHHHHHHHHHhhC
Q 010276 440 FYESALRLEPGYLGAALALAELHVI----EGRNGDAVSLLERYLKDW 482 (514)
Q Consensus 440 ~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~ 482 (514)
+|+++.+. .++.+.+.||.+|.. .+++++|+.+|+++.+..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888776 567888888888888 788888888888887764
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.05 E-value=5e-10 Score=81.13 Aligned_cols=90 Identities=13% Similarity=0.130 Sum_probs=65.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 010276 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIH-ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (514)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (514)
+..|..+...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++.+|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 44577777888888888888888888888877 88888888888888888888888888888877766532 4
Q ss_pred ChhHHHHHHHHHhhcCCCC
Q 010276 298 DYSKLSKLVHDLLSIDPSR 316 (514)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~ 316 (514)
.+.++...|+++...+|++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 4555566665555554443
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.04 E-value=6.1e-09 Score=80.35 Aligned_cols=120 Identities=19% Similarity=0.117 Sum_probs=86.6
Q ss_pred cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHh----cCCHHHHHHH
Q 010276 330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQ----FSKVKEALYA 405 (514)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~ 405 (514)
+++++|+.+|+++.+.. ++.+. +|.+|...+..++|+.+|+++.+. .+..+.+.+|.+|.. .+++++|+.+
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 46678888888887765 33344 788877777778888888888765 233677888888877 7788888888
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHh----cCCChHHHHHHHHHHHhhCCCChHHHHHHH
Q 010276 406 AREAMKAMPQSAKALKLVGDVHAS----NASGREKAKKFYESALRLEPGYLGAALALA 459 (514)
Q Consensus 406 ~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 459 (514)
|+++.+. .++.+.+.+|.+|.. . +++++|+.+|+++.+.. ++.+...|+
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~-~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVV-KNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCC-cCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 8888765 567788888888877 5 77888888888887763 445555444
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.02 E-value=1.5e-08 Score=89.46 Aligned_cols=80 Identities=8% Similarity=0.043 Sum_probs=67.4
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHH
Q 010276 410 MKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHV 489 (514)
Q Consensus 410 ~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 489 (514)
+...|.++.++..++..+... |++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++++.++|..+.++
T Consensus 270 ~~~~~~~a~~~~alal~~l~~-gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVK-GKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 356788888888888888877 9999999999999999875 56778889999999999999999999999999886554
Q ss_pred HH
Q 010276 490 KL 491 (514)
Q Consensus 490 ~l 491 (514)
..
T Consensus 348 ~~ 349 (372)
T 3ly7_A 348 WI 349 (372)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.00 E-value=2.5e-09 Score=77.39 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=37.7
Q ss_pred CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC
Q 010276 381 PDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEP 449 (514)
Q Consensus 381 ~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~ 449 (514)
|++ .+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++... |++++|+..|++++++.|
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERL-DRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhhh
Confidence 443 44555555555555555555555555555555555555555555555 555555555555555543
No 207
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.00 E-value=3.4e-08 Score=83.31 Aligned_cols=108 Identities=16% Similarity=0.138 Sum_probs=83.0
Q ss_pred HhcccCchhHHHHHHHHHh-----cC------ChHHHHHHHHHhHhhcCCh---HHHHHHHHHHHhc-----CCHHHHHH
Q 010276 344 RIDERHIPGYIMKGNLLLS-----MK------RPEAAVIAFRGAQELRPDL---RSYQGLVHSYLQF-----SKVKEALY 404 (514)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~-----~~------~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~-----~~~~~A~~ 404 (514)
+.+|++++.++..|.+... .| ....|...++++++++|+. .+|..+|.+|... |+.++|..
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 3456666666655554422 12 2467888889999999984 5788889888884 89999999
Q ss_pred HHHHHHhhCCCC-HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 010276 405 AAREAMKAMPQS-AKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (514)
Q Consensus 405 ~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 451 (514)
+|+++++++|+. ...++..|..+....|++++|...+++++..+|..
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999999975 88899999888774388899999999999887763
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.97 E-value=6.3e-09 Score=97.93 Aligned_cols=121 Identities=12% Similarity=-0.069 Sum_probs=57.5
Q ss_pred HHHHHhcCChHHHHHHHHHhHhhc-----CCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCC---HHH
Q 010276 357 GNLLLSMKRPEAAVIAFRGAQELR-----PDL----RSYQGLVHSYLQFSKVKEALYAAREAMKA-----MPQS---AKA 419 (514)
Q Consensus 357 ~~~~~~~~~~~~A~~~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~ 419 (514)
+..+..+|++++|+..+++++++. |++ .++.++|.+|..+|++++|+.++++++.+ .|++ ...
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 333445555555555555555431 221 23455555555555555555555555542 1222 233
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhh-----CCCChH---HHHHHHHHHHHcCChhHHHHHHHHH
Q 010276 420 LKLVGDVHASNASGREKAKKFYESALRL-----EPGYLG---AALALAELHVIEGRNGDAVSLLERY 478 (514)
Q Consensus 420 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~~ 478 (514)
+.++|.+|..+ |++++|+.+|++|+++ .|++|. ....++.++..++.+++|...|.++
T Consensus 396 l~nLa~~~~~~-G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 396 VMRAGLTNWHA-GHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554 5555555555555442 344333 2334444444555555555555443
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.95 E-value=1.2e-07 Score=83.80 Aligned_cols=155 Identities=17% Similarity=0.096 Sum_probs=92.6
Q ss_pred HHHHhCCCcHHHH--HHHHHHHHHhCC---hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCC
Q 010276 240 ELLQRFPNNIHIL--LEMAKVDAIIGK---NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP 314 (514)
Q Consensus 240 ~~~~~~p~~~~~~--~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 314 (514)
++....|.++.+| +..|..+...++ ..+|+.+|+++++++|++..++..++.++.... ...|
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~-------------~~~~ 251 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRH-------------SQHP 251 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------------HHSC
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh-------------ccCC
Confidence 3444556654433 344555555444 356777777777777777777776666665110 0001
Q ss_pred CChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHH
Q 010276 315 SRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYL 394 (514)
Q Consensus 315 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 394 (514)
........+ ..+... ..++...|.++.++..++..+...|++++|+..+++++.++|+..+|..+|.++.
T Consensus 252 ~~~~~~~~l---------~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~ 321 (372)
T 3ly7_A 252 LDEKQLAAL---------NTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYE 321 (372)
T ss_dssp CCHHHHHHH---------HHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CchhhHHHH---------HHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 111100000 112221 1233456667777777777777777888888888887777776666777777777
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCH
Q 010276 395 QFSKVKEALYAAREAMKAMPQSA 417 (514)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~~p~~~ 417 (514)
..|++++|++.|++++.++|..+
T Consensus 322 ~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 322 MKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HCCCHHHHHHHHHHHHhcCCCcC
Confidence 77777777777777777777754
No 210
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.93 E-value=6.4e-09 Score=97.88 Aligned_cols=118 Identities=6% Similarity=-0.059 Sum_probs=81.0
Q ss_pred cChhHHHHHHHHHHHh-----cccC---chhHHHHHHHHHhcCChHHHHHHHHHhHhh-----cCCh----HHHHHHHHH
Q 010276 330 KDERGALSYAEKSIRI-----DERH---IPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-----RPDL----RSYQGLVHS 392 (514)
Q Consensus 330 ~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~----~~~~~l~~~ 392 (514)
|++++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++.+ .|++ ..+.++|.+
T Consensus 323 g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 402 (490)
T 3n71_A 323 GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLT 402 (490)
T ss_dssp TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 7778888888777764 2333 345677777788888888888887777765 2332 347777888
Q ss_pred HHhcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 010276 393 YLQFSKVKEALYAAREAMKA-----MPQSA---KALKLVGDVHASNASGREKAKKFYESALRLE 448 (514)
Q Consensus 393 ~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~ 448 (514)
|..+|++++|+.++++++.+ .|+++ .....++.++..+ +.+++|...|.++.+..
T Consensus 403 ~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~-~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 403 NWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMEL-RMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 88888888888888877763 34443 4446677777776 77777777777765443
No 211
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.93 E-value=2.3e-08 Score=84.42 Aligned_cols=88 Identities=18% Similarity=0.171 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhc----CCChHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHH-cCChh
Q 010276 398 KVKEALYAAREAMKAMPQ--SAKALKLVGDVHASN----ASGREKAKKFYESALRLEPGY-LGAALALAELHVI-EGRNG 469 (514)
Q Consensus 398 ~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~----~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~-~g~~~ 469 (514)
....|...++++++++|+ +..++..+|.+|... .|+.++|..+|+++++++|+. ..+++.+|..+.. .|+++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 357899999999999999 677999999999983 399999999999999999975 9999999999988 49999
Q ss_pred HHHHHHHHHHhhCCCc
Q 010276 470 DAVSLLERYLKDWADD 485 (514)
Q Consensus 470 ~A~~~~~~~~~~~~~~ 485 (514)
+|..++++++...|..
T Consensus 258 ~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 258 GFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHcCCCCC
Confidence 9999999999988873
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.84 E-value=4.8e-08 Score=68.70 Aligned_cols=74 Identities=16% Similarity=0.084 Sum_probs=63.0
Q ss_pred CCCcHHHHHHHHHHHHHhCC---hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChH
Q 010276 245 FPNNIHILLEMAKVDAIIGK---NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPE 318 (514)
Q Consensus 245 ~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 318 (514)
+|++++++..+|.+++..++ .++|...++++++.+|+++.++..+|..+...|++++|+..++++++.+|.++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 67888888888888876665 688889999999999999888888999999999999999999888888887543
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.81 E-value=4.1e-08 Score=69.06 Aligned_cols=72 Identities=21% Similarity=0.119 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276 413 MPQSAKALKLVGDVHASNASG---REKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 413 ~p~~~~~~~~l~~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (514)
+|+++..+..+|.++... ++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+++++++..|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~-~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYL-HKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHT-TTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 588899999999998765 44 6899999999999999999999999999999999999999999999998874
No 214
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.75 E-value=1.4e-06 Score=82.76 Aligned_cols=171 Identities=10% Similarity=-0.026 Sum_probs=133.8
Q ss_pred HHHhh-cChhHHHHHHHHHHHhcc-cCchhHHHHHHHHHhcCC---------hHHHHHHHHHhHhh--cCChHHHHHHHH
Q 010276 325 VLWER-KDERGALSYAEKSIRIDE-RHIPGYIMKGNLLLSMKR---------PEAAVIAFRGAQEL--RPDLRSYQGLVH 391 (514)
Q Consensus 325 ~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~A~~~~~~~~~~--~~~~~~~~~l~~ 391 (514)
..+.. |+.++|+..|+++.+..- .+...|..+-.++...+. .+.|...|+++... .|+..+|..+..
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~ 113 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGAR 113 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34444 999999999999887532 235566667667665543 67899999988765 577788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHcCCh
Q 010276 392 SYLQFSKVKEALYAAREAMKAM-PQSAKALKLVGDVHASNASGREKAKKFYESALRL--EPGYLGAALALAELHVIEGRN 468 (514)
Q Consensus 392 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~ 468 (514)
.+.+.|++++|..+++++.... +-+...+..+-..+.+. |+.++|.+.|++..+. .|+ ...+..+...+.+.|+.
T Consensus 114 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~-g~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~ 191 (501)
T 4g26_A 114 LAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK-GDADKAYEVDAHMVESEVVPE-EPELAALLKVSMDTKNA 191 (501)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCH
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC-CCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhCCCH
Confidence 9999999999999999988753 23478888888888888 9999999999998875 343 57888899999999999
Q ss_pred hHHHHHHHHHHhhC--CCchHHHHHHHHHHH
Q 010276 469 GDAVSLLERYLKDW--ADDSLHVKLAQVFAA 497 (514)
Q Consensus 469 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~ 497 (514)
++|.++++++.+.. |+...+..+-..+..
T Consensus 192 d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 192 DKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999999987754 555566666555544
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.69 E-value=2e-07 Score=70.81 Aligned_cols=97 Identities=15% Similarity=-0.003 Sum_probs=84.7
Q ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC---ChHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHhCChhHHH
Q 010276 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG---KNDEAILNFEKVRSID-P-YIMTYMDEYAMLLKVKCDYSKLS 303 (514)
Q Consensus 229 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~ 303 (514)
.....+.+.|.+.+..+|.+.++.+.+|.++.+.+ +.++++..++.+++.+ | .+.+.++.+|..+.+.|+|++|.
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34566777888888888889999999999999988 6669999999999998 7 56899999999999999999999
Q ss_pred HHHHHHhhcCCCChHHHHHHHH
Q 010276 304 KLVHDLLSIDPSRPEVFVALSV 325 (514)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~ 325 (514)
++++++++..|++..+......
T Consensus 92 ~y~~~lL~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKELERL 113 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHH
Confidence 9999999999999887765543
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.65 E-value=3.9e-07 Score=69.18 Aligned_cols=84 Identities=11% Similarity=-0.096 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHhhC-C-CChHHHHHHHHHHHHcCChhHHHHHH
Q 010276 401 EALYAAREAMKAMPQSAKALKLVGDVHASNAS---GREKAKKFYESALRLE-P-GYLGAALALAELHVIEGRNGDAVSLL 475 (514)
Q Consensus 401 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~---~~~~A~~~~~~a~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~ 475 (514)
.+.+.|.+.+..+|.+.++.+.+|+++.+. + +.++++..++..++.+ | ++.+.++.+|..+++.|+|++|+.++
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S-~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRS-KYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 344445555555555555666666655554 4 3445666666655555 4 33555566666666666666666666
Q ss_pred HHHHhhCCCc
Q 010276 476 ERYLKDWADD 485 (514)
Q Consensus 476 ~~~~~~~~~~ 485 (514)
+++++..|++
T Consensus 95 ~~lL~ieP~n 104 (152)
T 1pc2_A 95 RGLLQTEPQN 104 (152)
T ss_dssp HHHHHHCTTC
T ss_pred HHHHhcCCCC
Confidence 6666666655
No 217
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.63 E-value=9.4e-06 Score=77.11 Aligned_cols=174 Identities=12% Similarity=0.087 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHhhcC-CCChHHHHHHHHHHhh----------cChhHHHHHHHHHHHhcc-cCchh
Q 010276 285 YMDEYAMLLKVKCDYSKLSKLVHDLLSID-PSRPEVFVALSVLWER----------KDERGALSYAEKSIRIDE-RHIPG 352 (514)
Q Consensus 285 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~----------~~~~~A~~~~~~~~~~~~-~~~~~ 352 (514)
.+......+.+.|+.++|.++|+++.+.. +.+...+..+-..+.. +..++|.+.|+++....- .+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 45566788889999999999999998753 3355566666555544 236789999998876532 24677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhh--cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHh
Q 010276 353 YIMKGNLLLSMKRPEAAVIAFRGAQEL--RPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAM-PQSAKALKLVGDVHAS 429 (514)
Q Consensus 353 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 429 (514)
+..+...+.+.|++++|..+|+++.+. .|+..+|..+...|.+.|+.++|.++++++.+.. .-+...+..+-..+.+
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 889999999999999999999998765 5777899999999999999999999999998753 2247888889999999
Q ss_pred cCCChHHHHHHHHHHHhh--CCCChHHHHHHHH
Q 010276 430 NASGREKAKKFYESALRL--EPGYLGAALALAE 460 (514)
Q Consensus 430 ~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~ 460 (514)
. |+.++|.+.+++..+. .|+ ...+..+-.
T Consensus 188 ~-g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~ 218 (501)
T 4g26_A 188 T-KNADKVYKTLQRLRDLVRQVS-KSTFDMIEE 218 (501)
T ss_dssp T-TCHHHHHHHHHHHHHHTSSBC-HHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHhCCCcC-HHHHHHHHH
Confidence 8 9999999999998764 444 334433433
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.51 E-value=1.7e-06 Score=62.60 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=58.0
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHH
Q 010276 216 LHRYVEAQCCIASNDYKGGLELFAELLQRF-------PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE 288 (514)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 288 (514)
...+.+|..++..|+|..|+.+|+.+++.. +..+.++..+|.++.+.|+++.|+..++++++.+|++..+..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 345666888888888888888888888742 3456778888888888888888888888888888888777666
Q ss_pred HH
Q 010276 289 YA 290 (514)
Q Consensus 289 l~ 290 (514)
++
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.46 E-value=2.1e-06 Score=62.11 Aligned_cols=77 Identities=18% Similarity=0.111 Sum_probs=67.2
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHH
Q 010276 248 NIHILLEMAKVDAIIGKNDEAILNFEKVRSID-------PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVF 320 (514)
Q Consensus 248 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 320 (514)
++.-.+.+|..++..|+|..|+.+|+.+++.. +....++..+|.++.+.|+++.|+..+++++...|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 45667899999999999999999999999863 34577889999999999999999999999999999998887
Q ss_pred HHHH
Q 010276 321 VALS 324 (514)
Q Consensus 321 ~~l~ 324 (514)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7776
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.44 E-value=1.5e-06 Score=80.40 Aligned_cols=84 Identities=15% Similarity=0.085 Sum_probs=47.8
Q ss_pred hcCChHHHHHHHHHhHhh-----cCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHH
Q 010276 362 SMKRPEAAVIAFRGAQEL-----RPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKA-----MPQS---AKALKLVG 424 (514)
Q Consensus 362 ~~~~~~~A~~~~~~~~~~-----~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~l~ 424 (514)
..|+|++|+..+++++++ .|++ .++.++|.+|..+|+|++|+.++++++.+ .|++ ...++++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 345666666666666554 2332 24556666666666666666666666543 2222 34455666
Q ss_pred HHHHhcCCChHHHHHHHHHHHh
Q 010276 425 DVHASNASGREKAKKFYESALR 446 (514)
Q Consensus 425 ~~~~~~~~~~~~A~~~~~~a~~ 446 (514)
.+|..+ |++++|+.+|++|++
T Consensus 390 ~~~~~q-g~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGL-ENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHhc-cCHHHHHHHHHHHHH
Confidence 666665 666666666666655
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.37 E-value=9.7e-07 Score=81.69 Aligned_cols=88 Identities=13% Similarity=0.011 Sum_probs=74.9
Q ss_pred HhcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHhcCCChHHHHHHHHHHHhh-----CCCChH---HHHH
Q 010276 394 LQFSKVKEALYAAREAMKA-----MPQS---AKALKLVGDVHASNASGREKAKKFYESALRL-----EPGYLG---AALA 457 (514)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~---~~~~ 457 (514)
...|++++|+..+++++.+ .|++ ..++.++|.+|..+ |++++|+.++++++.+ .|+++. .+.+
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~-g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYM-QDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 3568999999999999974 3555 45678999999998 9999999999999974 556654 7889
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhhC
Q 010276 458 LAELHVIEGRNGDAVSLLERYLKDW 482 (514)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~~~~~~ 482 (514)
||.+|..+|++++|+.++++++++.
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998864
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.36 E-value=2.9e-06 Score=78.75 Aligned_cols=88 Identities=13% Similarity=0.016 Sum_probs=56.5
Q ss_pred HHhcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHhcCCChHHHHHHHHHHHhh-----CCCChH---HHH
Q 010276 393 YLQFSKVKEALYAAREAMKA-----MPQS---AKALKLVGDVHASNASGREKAKKFYESALRL-----EPGYLG---AAL 456 (514)
Q Consensus 393 ~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~---~~~ 456 (514)
+..+|++++|+..+++++.+ .|++ ..++.++|.+|..+ |++++|+.++++++.+ .|++|. .++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~-g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINL-GLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 44566677777777776653 2333 34556677777776 7777777777777653 344443 566
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhh
Q 010276 457 ALAELHVIEGRNGDAVSLLERYLKD 481 (514)
Q Consensus 457 ~la~~~~~~g~~~~A~~~~~~~~~~ 481 (514)
+||.+|..+|++++|+.++++++++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 6777777777777777777777664
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.36 E-value=4.2e-06 Score=77.62 Aligned_cols=102 Identities=14% Similarity=0.070 Sum_probs=71.0
Q ss_pred HHhcCChHHHHHHHHHhHhh-----cCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCC---HHHHHH
Q 010276 360 LLSMKRPEAAVIAFRGAQEL-----RPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKA-----MPQS---AKALKL 422 (514)
Q Consensus 360 ~~~~~~~~~A~~~~~~~~~~-----~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~ 422 (514)
+..+|++++|+..+++++++ .|++ .++.+++.+|..+|++++|+.++++++.. .|++ ...+++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 45667788888888887765 2333 35777888888888888888888888763 2333 456778
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhh-----CCCChHHH---HHHHHHH
Q 010276 423 VGDVHASNASGREKAKKFYESALRL-----EPGYLGAA---LALAELH 462 (514)
Q Consensus 423 l~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~---~~la~~~ 462 (514)
+|.+|..+ |++++|+.+|++|+++ .|++|.+. .+|+.+.
T Consensus 377 La~~~~~~-g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 377 VGKLQLHQ-GMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD 423 (429)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 88888887 8888888888888764 66666533 3344444
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.32 E-value=2.8e-05 Score=57.83 Aligned_cols=108 Identities=12% Similarity=-0.049 Sum_probs=61.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCh------hHHHHHHHHHhhcCCCC--------hHHHHHHHHHHhhcChhHHHHHHHHHHH
Q 010276 279 DPYIMTYMDEYAMLLKVKCDY------SKLSKLVHDLLSIDPSR--------PEVFVALSVLWERKDERGALSYAEKSIR 344 (514)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~A~~~~~~~~~ 344 (514)
.|.+++.|..+.......|+. ++.++.|++++..-|.. ...|...+.....++.++|.+.|+.++.
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 455555555555555555555 55555555555544432 1223333333222666667777776666
Q ss_pred hcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHH
Q 010276 345 IDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSY 386 (514)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 386 (514)
.+...+.+|...|..-.++|+...|.+.+.+++...|...-.
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 655556666666666667777777777777777666665333
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.23 E-value=6.5e-05 Score=55.92 Aligned_cols=119 Identities=12% Similarity=0.112 Sum_probs=61.8
Q ss_pred hcccCchhHHHHHHHHHhcCCh------HHHHHHHHHhHhhcCChH--HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 010276 345 IDERHIPGYIMKGNLLLSMKRP------EAAVIAFRGAQELRPDLR--SYQGLVHSYLQFSKVKEALYAAREAMKAMPQS 416 (514)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~------~~A~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 416 (514)
+.|.+++.|........+.|+. +.-++.|++++..-|... .|.. .
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrr---------------------------Y 60 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNES---------------------------F 60 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHH---------------------------H
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHH---------------------------H
Confidence 3566666666666666666666 555566666665544320 0000 1
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHH
Q 010276 417 AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLA 492 (514)
Q Consensus 417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 492 (514)
...|...+.. ... ++.++|...|+.++++....+.+|...|....++|+...|.+.+.+++...|.+.-....+
T Consensus 61 I~LWIrYA~~-~ei-~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 61 ARIQVRFAEL-KAI-QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp HHHHHHHHHH-HHH-HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred HHHHHHHHHH-HHh-cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 2233333322 233 5556666666666555555555666666666666666666666666666665554333333
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.19 E-value=2.4e-05 Score=57.08 Aligned_cols=97 Identities=18% Similarity=0.038 Sum_probs=81.4
Q ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHHhCChhHHH
Q 010276 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDE---AILNFEKVRSID-P-YIMTYMDEYAMLLKVKCDYSKLS 303 (514)
Q Consensus 229 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~---A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~ 303 (514)
.....+...|.+....++.+.++.+.+|+++....+... ++..++..+..+ | ...+.++.+|..+++.|+|++|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 445667777777777788889999999999999887776 999999998876 5 46788999999999999999999
Q ss_pred HHHHHHhhcCCCChHHHHHHHH
Q 010276 304 KLVHDLLSIDPSRPEVFVALSV 325 (514)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~ 325 (514)
.+++.+++..|++..+......
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999887665543
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.14 E-value=4e-05 Score=55.88 Aligned_cols=92 Identities=10% Similarity=-0.007 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHH---HHHHHHHhHhhc-CCh--HHHHHHHHHHHhcCCHHHHHHHHH
Q 010276 334 GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEA---AVIAFRGAQELR-PDL--RSYQGLVHSYLQFSKVKEALYAAR 407 (514)
Q Consensus 334 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---A~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~A~~~~~ 407 (514)
.+...|.+....++....+.+.+|.++.+..+... ++..++..+... |.. +..+.+|..+++.|+|++|..+++
T Consensus 19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44445555555555556666666666666665554 666666666655 422 456666667777777777777777
Q ss_pred HHHhhCCCCHHHHHHHHH
Q 010276 408 EAMKAMPQSAKALKLVGD 425 (514)
Q Consensus 408 ~~~~~~p~~~~~~~~l~~ 425 (514)
.+++..|++..+......
T Consensus 99 ~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 99 GLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HHHHHCTTCHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHH
Confidence 777777766655544433
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.06 E-value=3.9e-05 Score=58.56 Aligned_cols=131 Identities=15% Similarity=0.154 Sum_probs=83.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHhhc---CCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCCHH
Q 010276 352 GYIMKGNLLLSMKRPEAAVIAFRGAQELR---PDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAM---PQSAK 418 (514)
Q Consensus 352 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~ 418 (514)
+++.-...+...|.|+.|+.....++... |+. .++..+|.+++..++|..|...|+++++.. +..+.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45556667788888888888888766553 331 257788888888888888888888887642 22222
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHH
Q 010276 419 ALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVF 495 (514)
Q Consensus 419 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 495 (514)
....++. . ..... .... +.+.++.+.++.|+.+.|++++|+..++.+-....+..+...||..|
T Consensus 102 ~~~~~~~----~-ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGN----S-ASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp ---------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred ccccccc----c-CCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 1111110 0 01111 1111 34567889999999999999999999887655555567888888776
No 229
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=98.01 E-value=0.002 Score=48.74 Aligned_cols=130 Identities=21% Similarity=0.266 Sum_probs=99.2
Q ss_pred chHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhh
Q 010276 3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST 82 (514)
Q Consensus 3 ~~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 82 (514)
.+.-.+..-++-.+|+.++.++..|..- ..+--.+++..++-.|+|.+|+-.+..
T Consensus 4 ~~~~kI~Ks~kY~dYdt~~fLsa~L~~~-----------~~eY~lL~~I~LyyngEY~R~Lf~L~~-------------- 58 (242)
T 3kae_A 4 KLIGKICKSIRYRDYETAIFLAACLLPC-----------KPEYRMLMSIVLYLNGEYTRALFHLHK-------------- 58 (242)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHC---------------CTHHHHHHHHHHTTCHHHHHHHHHT--------------
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHccC-----------ChHHHhhhhhhhhhcchHhHHHHHHHh--------------
Confidence 4556677788899999999988877541 112447788999999999998776653
Q ss_pred hhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCC------------------CCccHH-H
Q 010276 83 SSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPS------------------KARNLQ-M 143 (514)
Q Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------------------~~~~~~-~ 143 (514)
.+.....+..+.|+...+++..|+..++++.. +|.+.+ .
T Consensus 59 ----------------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfF 116 (242)
T 3kae_A 59 ----------------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFF 116 (242)
T ss_dssp ----------------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHH
T ss_pred ----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHH
Confidence 25567788889999999999999999887531 123333 3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHH
Q 010276 144 SLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAIT 179 (514)
Q Consensus 144 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 179 (514)
+..+|.++.+.|+.++|+..|.......|-.+.+-.
T Consensus 117 y~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEn 152 (242)
T 3kae_A 117 ESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVEN 152 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHH
Confidence 467899999999999999999999999996555543
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.47 E-value=0.0058 Score=45.34 Aligned_cols=80 Identities=10% Similarity=-0.038 Sum_probs=67.3
Q ss_pred CCcHHHHHHHHHHHHHhCChH---HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHH
Q 010276 246 PNNIHILLEMAKVDAIIGKND---EAILNFEKVRSIDPY-IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFV 321 (514)
Q Consensus 246 p~~~~~~~~la~~~~~~~~~~---~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 321 (514)
+.++++.+.+|+++....+.+ +++..++..+..+|. ..+.++.+|..+++.|+|++|.++.+.+++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 456789999999999887654 688999999988884 5678899999999999999999999999999999987765
Q ss_pred HHHH
Q 010276 322 ALSV 325 (514)
Q Consensus 322 ~l~~ 325 (514)
....
T Consensus 116 Lk~~ 119 (144)
T 1y8m_A 116 LKSM 119 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.43 E-value=0.0063 Score=45.12 Aligned_cols=71 Identities=7% Similarity=-0.085 Sum_probs=34.6
Q ss_pred chhHHHHHHHHHhcCCh---HHHHHHHHHhHhhcCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 010276 350 IPGYIMKGNLLLSMKRP---EAAVIAFRGAQELRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420 (514)
Q Consensus 350 ~~~~~~~~~~~~~~~~~---~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 420 (514)
+.+.+++|.++.+..+. .+++.+++..+...|.. +.++.++..+.+.|+|++|..+.+.+++..|++..+.
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 34444555555444432 23445555555444432 3445555555555555555555555555555554443
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.42 E-value=0.0043 Score=45.37 Aligned_cols=69 Identities=10% Similarity=0.046 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCH---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChH
Q 010276 384 RSYQGLVHSYLQFSKV---KEALYAAREAMKAMPQ-SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG 453 (514)
Q Consensus 384 ~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 453 (514)
.+.+++++++.+..+. .+++.+++..+...|. .-+.++.+|..+.+. |+|++|.++.+..++..|++..
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~ykl-gdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL-GEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTTCTTCHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHh-hhHHHHHHHHHHHHhhCCCCHH
Confidence 3444444444443322 2344444444444432 233444444444444 4444444444444444444433
No 233
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.41 E-value=0.1 Score=50.43 Aligned_cols=65 Identities=11% Similarity=0.064 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHH
Q 010276 110 VKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAI 178 (514)
Q Consensus 110 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 178 (514)
..+.-+.-.+..|++..+......+...|-.+- .....+-...+.. .-..+...+..+|+.+...
T Consensus 8 ~~~~~a~~a~~~~~~~~~~~l~~~l~~~pL~~y--l~y~~l~~~l~~~--~~~ev~~Fl~~~~~~p~~~ 72 (618)
T 1qsa_A 8 SRYAQIKQAWDNRQMDVVEQMMPGLKDYPLYPY--LEYRQITDDLMNQ--PAVTVTNFVRANPTLPPAR 72 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSGGGTTSTTHHH--HHHHHHHHTGGGC--CHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhcCCCcHHH--HHHHHHHhCcccC--CHHHHHHHHHHCCCChhHH
Confidence 446667777889999999888887755555332 2222222232321 2225566677788776654
No 234
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.37 E-value=0.0034 Score=45.88 Aligned_cols=78 Identities=10% Similarity=-0.049 Sum_probs=63.4
Q ss_pred cHHHHHHHHHHHHHhCCh---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHH
Q 010276 248 NIHILLEMAKVDAIIGKN---DEAILNFEKVRSIDPY-IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL 323 (514)
Q Consensus 248 ~~~~~~~la~~~~~~~~~---~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 323 (514)
++.+.+.+|+++.+..+. .+++..++..++.+|. ..+.++.+|..+.+.|+|++|.++.+.+++..|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 568888888888888764 4688888888888874 477888899999999999999999999999999988776554
Q ss_pred HH
Q 010276 324 SV 325 (514)
Q Consensus 324 ~~ 325 (514)
..
T Consensus 119 ~~ 120 (134)
T 3o48_A 119 SM 120 (134)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 235
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.35 E-value=0.13 Score=49.89 Aligned_cols=164 Identities=9% Similarity=-0.034 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010276 332 ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD-LRSYQGLVHSYLQFSKVKEALYAAREAM 410 (514)
Q Consensus 332 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (514)
..++...+.+.....+++.. .-.++......|+++.|...++.+-...+. ....+-+|.++...|+.++|...|+++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~-~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRSQSTSL-IERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp CHHHHHHHHHHHHTCCCHHH-HHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHhccccCCChHH-HHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44555555554433322222 222222334456666666666554332212 2445566666666666666666666665
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC-----hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276 411 KAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY-----LGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 411 ~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (514)
. +.+ .|-.++.-. . |.... ... ....+.. ...-...+..+...|....|...+....... ++
T Consensus 347 ~--~~~--fYg~lAa~~--L-g~~~~-~~~----~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~-~~ 413 (618)
T 1qsa_A 347 Q--QRG--FYPMVAAQR--I-GEEYE-LKI----DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK-SK 413 (618)
T ss_dssp T--SCS--HHHHHHHHH--T-TCCCC-CCC----CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CH
T ss_pred c--CCC--hHHHHHHHH--c-CCCCC-CCC----CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC-CH
Confidence 4 221 121222111 1 21100 000 0000100 0122455667788899999988888777643 33
Q ss_pred hHHHHHHHHHHHhccHHHHHHHHH
Q 010276 486 SLHVKLAQVFAATNMLQEALSHYE 509 (514)
Q Consensus 486 ~~~~~l~~~~~~~g~~~~A~~~~~ 509 (514)
.-...++.+....|.+..++....
T Consensus 414 ~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 414 TEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHH
Confidence 444566777778888877765443
No 236
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.22 E-value=0.048 Score=49.28 Aligned_cols=92 Identities=14% Similarity=-0.030 Sum_probs=68.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhhcCC-----h--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCCH----HHH
Q 010276 355 MKGNLLLSMKRPEAAVIAFRGAQELRPD-----L--RSYQGLVHSYLQFSKVKEALYAAREAMKAM---PQSA----KAL 420 (514)
Q Consensus 355 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~----~~~ 420 (514)
.+|.+|+..|+|.+|.+.+.+..+.... . +.+.....+|...+++.++...+.++.... +.+| ...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 6888999999999999888888765322 1 456777888899999999999998886532 1222 344
Q ss_pred HHHHHHHH-hcCCChHHHHHHHHHHHhh
Q 010276 421 KLVGDVHA-SNASGREKAKKFYESALRL 447 (514)
Q Consensus 421 ~~l~~~~~-~~~~~~~~A~~~~~~a~~~ 447 (514)
..-|..+. .. ++|..|...|-++++.
T Consensus 184 ~~~Gi~~l~~~-rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 184 LQSGILHAADE-RDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHTT-SCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhc-cCHHHHHHHHHHHHhc
Confidence 56677777 66 9999999998888754
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.0057 Score=60.15 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHH
Q 010276 419 ALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERY 478 (514)
Q Consensus 419 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 478 (514)
.+...+..+..+ |+++-|+.+.++++...|.....|+.|+.+|..+|+++.|+-.+..+
T Consensus 339 LL~~Qa~FLl~K-~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNR-GDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhcc-CcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 444556666665 77777777777777777777777777777777777777777666654
No 238
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=97.08 E-value=0.012 Score=49.18 Aligned_cols=128 Identities=11% Similarity=0.091 Sum_probs=97.7
Q ss_pred HHHHhcCCHHHHHHHHhc-CCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHH
Q 010276 116 SCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISL 194 (514)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~ 194 (514)
..+++.|..++|++.+.. +...|.+......+.++++-.|++++|.+.++.+.+++|........+..+- ..+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-~aE~~--- 80 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-KAAQA--- 80 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-HHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-HHHHH---
Confidence 346789999999998887 7778999999999999999999999999999999999998766553332211 11111
Q ss_pred HhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 010276 195 FAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN 248 (514)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~ 248 (514)
....-.....|.....+..|......+......|+.++|...-.++++..|..
T Consensus 81 -R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 81 -RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp -HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred -HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 11111223344445567889999999999999999999999999998877654
No 239
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.99 E-value=0.12 Score=52.76 Aligned_cols=164 Identities=15% Similarity=0.050 Sum_probs=83.7
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCCh
Q 010276 287 DEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRP 366 (514)
Q Consensus 287 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (514)
...+..+...|.+++|+...+ ++...+. .....|++++|.+..+. .+++..|..+|..+...+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~f~--~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~ 697 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQKFE--LALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNF 697 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHHHH--HHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchhee--hhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCH
Confidence 444555556666666654431 2222111 12233777777665432 24466777888888888888
Q ss_pred HHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 010276 367 EAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALR 446 (514)
Q Consensus 367 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~ 446 (514)
+.|+.+|.++-. +..+..++...|+. +.+..++...... |++..|...|.+.
T Consensus 698 ~~A~~~y~~~~d-------~~~l~~l~~~~~~~------------------~~~~~~~~~a~~~-~~~~~A~~~~~~~-- 749 (814)
T 3mkq_A 698 KLAIEAFTNAHD-------LESLFLLHSSFNNK------------------EGLVTLAKDAETT-GKFNLAFNAYWIA-- 749 (814)
T ss_dssp HHHHHHHHHHTC-------HHHHHHHHHHTTCH------------------HHHHHHHHHHHHT-TCHHHHHHHHHHH--
T ss_pred HHHHHHHHHccC-------hhhhHHHHHHcCCH------------------HHHHHHHHHHHHc-CchHHHHHHHHHc--
Confidence 888887776511 11222222223333 3333444444444 5555555444331
Q ss_pred hCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc----hHHHHHHHHHHHhccHH
Q 010276 447 LEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD----SLHVKLAQVFAATNMLQ 502 (514)
Q Consensus 447 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~ 502 (514)
++ ......+|...+++++|+.+.++ ..|.. .+....+.-+...|+.+
T Consensus 750 ---g~---~~~a~~~~~~~~~~~~A~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~~~~ 800 (814)
T 3mkq_A 750 ---GD---IQGAKDLLIKSQRFSEAAFLGST---YGLGDNEVNDIVTKWKENLILNGKNT 800 (814)
T ss_dssp ---TC---HHHHHHHHHHTTCHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred ---CC---HHHHHHHHHHcCChHHHHHHHHH---hCCChHHHHHHHHHHHHHHHhccchh
Confidence 11 11223345556777777776554 44554 45555566666666543
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.0087 Score=58.90 Aligned_cols=58 Identities=22% Similarity=0.208 Sum_probs=45.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010276 352 GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREA 409 (514)
Q Consensus 352 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~ 409 (514)
.+..-+..+...|+++-|+.+-++++...|+. ..|..|+.+|..+|+++.|+-.+..+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44555667777888888888888888888886 78888888888888888888777655
No 241
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.80 E-value=0.048 Score=49.24 Aligned_cols=90 Identities=19% Similarity=0.082 Sum_probs=42.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC---CCChH----H
Q 010276 388 GLVHSYLQFSKVKEALYAAREAMKAMPQ--S----AKALKLVGDVHASNASGREKAKKFYESALRLE---PGYLG----A 454 (514)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~----~ 454 (514)
.+|..|...|+|.+|...+.+..+.... + .+++.....+|... +++.++...+.++.... +.+|. .
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~-~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHAL-SNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 4555556666666665555555442111 1 23344444555555 55555555555554321 11111 2
Q ss_pred HHHHHHHHH-HcCChhHHHHHHHHH
Q 010276 455 ALALAELHV-IEGRNGDAVSLLERY 478 (514)
Q Consensus 455 ~~~la~~~~-~~g~~~~A~~~~~~~ 478 (514)
...-|.++. ..++|..|...|-.+
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHH
Confidence 223344444 455555555555544
No 242
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.45 E-value=0.16 Score=51.77 Aligned_cols=46 Identities=7% Similarity=-0.031 Sum_probs=33.4
Q ss_pred HHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010276 118 HFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC 167 (514)
Q Consensus 118 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 167 (514)
.+..|++++|.+..+.+ .++..|..+|..+.+.|+++.|+.+|.++
T Consensus 662 ~l~~~~~~~A~~~~~~~----~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE----SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 35677777777776655 45667777777777778877777777765
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.57 Score=43.50 Aligned_cols=201 Identities=11% Similarity=0.047 Sum_probs=114.1
Q ss_pred hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCC-CChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhh
Q 010276 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGE-TSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST 82 (514)
Q Consensus 4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 82 (514)
.+..++.+. .|++..|+.. ++.+...+.. .........+..+...++..|+++...+.+.-..............
T Consensus 20 ~~~~~~~l~-~~~~~~a~e~---ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~ 95 (445)
T 4b4t_P 20 EFPKIDSLA-QNDCNSALDQ---LLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQY 95 (445)
T ss_dssp --------C-HHHHHHHHHH---HHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHH
T ss_pred HHHHHHHHH-cCCHHHHHHH---HHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 344455553 4677766653 3333222111 1233345567778888999999988877665544433222222222
Q ss_pred hhhh---hhhc-cccCCC--C---ccc---cc----ccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-------Cc
Q 010276 83 SSRS---SLST-SNRSSS--P---NSF---NV----SAINENEVKYKIASCHFALGETKAAIVEMEGIPSK-------AR 139 (514)
Q Consensus 83 ~~~~---~~~~-~~~~~a--~---~~~---~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------~~ 139 (514)
+... ++.. ...+.. . ..+ .. .......+...|+..+...|++.+|..++..+... ..
T Consensus 96 ~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~ 175 (445)
T 4b4t_P 96 MIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE 175 (445)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH
Confidence 2111 1110 000000 0 000 00 01113445678999999999999999999886321 22
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHHh---cCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHH
Q 010276 140 NLQMSLLMAKLYRNSRHNRGAVACYKECLR---HCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWL 216 (514)
Q Consensus 140 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (514)
-.+.+....+++...+++.+|...++++.. ..+..+.....+
T Consensus 176 kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~----------------------------------- 220 (445)
T 4b4t_P 176 KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY----------------------------------- 220 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH-----------------------------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH-----------------------------------
Confidence 356778889999999999999999998742 233333333222
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 010276 217 HRYVEAQCCIASNDYKGGLELFAELLQR 244 (514)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 244 (514)
....|..+...++|.+|...|..+...
T Consensus 221 -~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 221 -YNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp -HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 234488888999999999999988763
No 244
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.23 E-value=1.2e-05 Score=72.46 Aligned_cols=139 Identities=10% Similarity=0.051 Sum_probs=85.5
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHH
Q 010276 224 CCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLS 303 (514)
Q Consensus 224 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 303 (514)
++...|+|..|++..+++ +++.+|-....+....+++.-|..+--.++- .|+. +-.+...|...|.+++-+
T Consensus 179 tLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hade---L~elv~~YE~~G~f~ELI 249 (624)
T 3lvg_A 179 TLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADE---LEELINYYQDRGYFEELI 249 (624)
T ss_dssp SSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSC---CSGGGSSSSTTCCCTTST
T ss_pred HHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHH---HHHHHHHHHhCCCHHHHH
Confidence 333444444444443332 3455666666666666666666555444332 2222 123445567788888889
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHh-c-c------cCchhHHHHHHHHHhcCChHHHHH
Q 010276 304 KLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRI-D-E------RHIPGYIMKGNLLLSMKRPEAAVI 371 (514)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~-~-~------~~~~~~~~~~~~~~~~~~~~~A~~ 371 (514)
.+++..+.+..-+...+..+|.+|..=++++-.+.++..... + | +....|..+..+|..-.+|+.|..
T Consensus 250 sLlEaglglErAHmGmFTELaILYsKY~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 250 TMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTHHHHTTSTTCCHHHHHHHHHHHHSSCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 999999888888888888999988886666666665542221 1 1 124456777777777778877653
No 245
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.01 E-value=0.1 Score=43.61 Aligned_cols=121 Identities=13% Similarity=0.105 Sum_probs=80.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhH
Q 010276 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (514)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (514)
....++.|+.++|++.....++..|.+......+...++-.|+++.|.+.++.+.+++|........+-.+. .
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-------~ 76 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-------K 76 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-------H
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-------H
Confidence 344567799999999999999999999999999999999999999999999999999998754322211110 0
Q ss_pred HHHHHHHHhh-----cCCCChHHHHHHHH----HHhhcChhHHHHHHHHHHHhcccC
Q 010276 302 LSKLVHDLLS-----IDPSRPEVFVALSV----LWERKDERGALSYAEKSIRIDERH 349 (514)
Q Consensus 302 A~~~~~~~~~-----~~~~~~~~~~~l~~----~~~~~~~~~A~~~~~~~~~~~~~~ 349 (514)
|...=.+++. ..+..+..|...-. ....|+.++|...-.++++..|..
T Consensus 77 aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 77 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 1111111221 12223333433221 112288888888888887776554
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.91 E-value=1.7 Score=43.97 Aligned_cols=264 Identities=9% Similarity=0.013 Sum_probs=122.0
Q ss_pred HHhcCHHHHHHHHHHHHHhC-CCc----HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCC------CH----HHHHHHH
Q 010276 226 IASNDYKGGLELFAELLQRF-PNN----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY------IM----TYMDEYA 290 (514)
Q Consensus 226 ~~~~~~~~A~~~~~~~~~~~-p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~----~~~~~l~ 290 (514)
...|+.++++..+.+.+... .++ ..+.+.+|.++... .+++...+...+..+.. .. .+-..+|
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~--~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGF--GRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTT--THHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 44566667766666655421 122 23444455554433 34567766666654320 11 2334455
Q ss_pred HHHHHhCChhHHHHHHHHHhhcCCCCh--HHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChH
Q 010276 291 MLLKVKCDYSKLSKLVHDLLSIDPSRP--EVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE 367 (514)
Q Consensus 291 ~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (514)
.++.-.++ +++...+..++..+.... .+-..+|.++.. |+.+-....+..+.+...+...-...+|..+...|+.+
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 55544443 445555555554322111 122334444444 44433333333333322222222233444455667766
Q ss_pred HHHHHHHHhHhhcCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 010276 368 AAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYES 443 (514)
Q Consensus 368 ~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 443 (514)
.+....+.... .++. .+-..+|..|...|+...-..++..+..-..++..-...+|...... |+.+.+.+.+..
T Consensus 542 ~~~~li~~L~~-~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~-g~~e~v~rlv~~ 619 (963)
T 4ady_A 542 LADDLITKMLA-SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLL-RDYTTVPRIVQL 619 (963)
T ss_dssp GGHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTS-SSCSSHHHHTTT
T ss_pred HHHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhcc-CCHHHHHHHHHH
Confidence 66655555433 2232 23456677777788865444466655543222232222333333333 554444443332
Q ss_pred HHhhCCCChHHHHHHHHHHHHc--CC-hhHHHHHHHHHHhhCCCch----HHHHHHHHHHH
Q 010276 444 ALRLEPGYLGAALALAELHVIE--GR-NGDAVSLLERYLKDWADDS----LHVKLAQVFAA 497 (514)
Q Consensus 444 a~~~~~~~~~~~~~la~~~~~~--g~-~~~A~~~~~~~~~~~~~~~----~~~~l~~~~~~ 497 (514)
..+ ..++.+.+..+.++-.. |+ ..+++..+.+... ++++. +...||.+...
T Consensus 620 L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 620 LSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp GGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHSTT
T ss_pred HHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHhcC
Confidence 222 23455555544444333 33 2567777777643 44442 44455554433
No 247
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.46 Score=37.08 Aligned_cols=102 Identities=13% Similarity=0.026 Sum_probs=65.9
Q ss_pred HHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHH
Q 010276 359 LLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAK 438 (514)
Q Consensus 359 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~ 438 (514)
+....|+++.|.+..+.. .+...|..+|......|+++-|..+|+++-. . ..+..+|... |+.+.-.
T Consensus 14 LAL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~---~~L~~Ly~~t-g~~e~L~ 80 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQHS-----F---DKLSFLYLVT-GDVNKLS 80 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----H---HHHHHHHHHH-TCHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----H---HHHHHHHHHh-CCHHHHH
Confidence 446788999988887654 2336789999999999999998888877532 2 2233334444 7766555
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHH
Q 010276 439 KFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERY 478 (514)
Q Consensus 439 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 478 (514)
+.-+.+...+ + +.....++...|+++++++.|.+.
T Consensus 81 kla~iA~~~g-~----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTRE-D----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTT-C----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc-c----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5444443322 1 122334566788999998888653
No 248
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.85 E-value=0.16 Score=51.47 Aligned_cols=96 Identities=9% Similarity=-0.109 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhh-cChhHHHHHHHHHHHh----cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhh--cCChHHHHHHH
Q 010276 318 EVFVALSVLWER-KDERGALSYAEKSIRI----DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL--RPDLRSYQGLV 390 (514)
Q Consensus 318 ~~~~~l~~~~~~-~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 390 (514)
..+..+-..+.. |+.++|...|..+.+. ..-+...|..+...+.+.|+.++|.+.|+++.+. .|+..+|..+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 345555555555 8889999888765432 1234677888888889999999999999888765 47778888888
Q ss_pred HHHHhcCCH-HHHHHHHHHHHhhC
Q 010276 391 HSYLQFSKV-KEALYAAREAMKAM 413 (514)
Q Consensus 391 ~~~~~~~~~-~~A~~~~~~~~~~~ 413 (514)
.++.+.|+. ++|..+++++....
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcC
Confidence 888888874 67888888888754
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.69 E-value=0.19 Score=45.77 Aligned_cols=108 Identities=14% Similarity=0.063 Sum_probs=57.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-CCChHHH-HHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 010276 389 LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN-ASGREKA-KKFYESALRLEPGYLGAALALAELHVIEG 466 (514)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~~~~~~A-~~~~~~a~~~~~~~~~~~~~la~~~~~~g 466 (514)
.+......|+.+.|...+++++.+.....- ... ...+-.+ ...+++. ...+...++..+...|
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L---------~~~~~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g 185 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVL---------DDLRDFQFVEPFATALVED------KVLAHTAKAEAEIACG 185 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTT---------GGGTTSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCC---------CCCCchhHHHHHHHHHHHH------HHHHHHHHHHHHHHCC
Confidence 344445578999999999999987533210 000 0111111 1111111 0123344555556666
Q ss_pred ChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHH
Q 010276 467 RNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAA 511 (514)
Q Consensus 467 ~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a 511 (514)
++.+|+..+..++..+|-++ ++..+..++...|+..+|+..|+++
T Consensus 186 ~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 186 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666666554 5666666666666666666666554
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.64 E-value=1.4 Score=40.91 Aligned_cols=190 Identities=11% Similarity=0.105 Sum_probs=121.4
Q ss_pred cCCHHHHHHHHhcC------CC-CCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhcc------C
Q 010276 121 LGETKAAIVEMEGI------PS-KARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGA------T 187 (514)
Q Consensus 121 ~g~~~~A~~~~~~~------~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~------~ 187 (514)
.|++++|++.+..+ .. .+....+...+..++...|+++...+.+.-..+.......+...+.+... .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 46788887765332 22 25678888888899999999988877776666655555555444433211 1
Q ss_pred cccH---hHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCc----HHHHHHHHHH
Q 010276 188 PKDI---ISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF--PNN----IHILLEMAKV 258 (514)
Q Consensus 188 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~----~~~~~~la~~ 258 (514)
..+. ....+......... .............++..+...|++.+|..++..+.... ..+ .+++....++
T Consensus 109 ~~d~~~~~~~i~~l~~vte~k--iflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENK--IFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCC--CCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 1111 11111111111100 01122233334567999999999999999999987521 111 5677888899
Q ss_pred HHHhCChHHHHHHHHHHHh---hCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHhhc
Q 010276 259 DAIIGKNDEAILNFEKVRS---IDPYI----MTYMDEYAMLLKVKCDYSKLSKLVHDLLSI 312 (514)
Q Consensus 259 ~~~~~~~~~A~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 312 (514)
+...+++.+|...+.++.. ..+.. ...+...|.++...++|.+|-..|..++..
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 9999999999999988743 22333 235667788888899999999888888753
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.63 E-value=2.4 Score=44.94 Aligned_cols=141 Identities=9% Similarity=-0.081 Sum_probs=73.8
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhc----------------------
Q 010276 255 MAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSI---------------------- 312 (514)
Q Consensus 255 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------------- 312 (514)
+...+...+.++-+.+ .+...|.++...+.+|.++...|++++|..+|+++..-
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3334444555544433 22334444445555566666666666666555554211
Q ss_pred -CCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCch-----hHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHH
Q 010276 313 -DPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIP-----GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRS 385 (514)
Q Consensus 313 -~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 385 (514)
....+..+..+..++.. +-++.+++....+++..+.+.. .|..+-..+...|+|++|...+...-...-....
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~c 973 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSC 973 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHH
Confidence 01112334444445554 7777888888777775543322 4566667777888888887766544322222244
Q ss_pred HHHHHHHHHhcCCH
Q 010276 386 YQGLVHSYLQFSKV 399 (514)
Q Consensus 386 ~~~l~~~~~~~~~~ 399 (514)
+..+....+..|..
T Consensus 974 Lr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 974 LLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHHHHCCH
T ss_pred HHHHHHHHHhCCCh
Confidence 44554444544443
No 252
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.53 E-value=0.17 Score=51.23 Aligned_cols=100 Identities=10% Similarity=-0.089 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh--CCCChHHHHH
Q 010276 384 RSYQGLVHSYLQFSKVKEALYAAREAMKA----MPQSAKALKLVGDVHASNASGREKAKKFYESALRL--EPGYLGAALA 457 (514)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~ 457 (514)
..+..+...|.+.|+.++|..++.++.+. ..-+...|+.+-..+.+. |+.++|.+.|++..+. .| +...|..
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~-G~~~eA~~Lf~eM~~~G~~P-DvvTYnt 205 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ-GAFKELVYVLFMVKDAGLTP-DLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHTTCCC-CHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCC-cHHHHHH
Confidence 46899999999999999999999876532 233588999999999998 9999999999998774 45 4678888
Q ss_pred HHHHHHHcCCh-hHHHHHHHHHHhhCCCc
Q 010276 458 LAELHVIEGRN-GDAVSLLERYLKDWADD 485 (514)
Q Consensus 458 la~~~~~~g~~-~~A~~~~~~~~~~~~~~ 485 (514)
+..++.+.|+. ++|.++|+++.+..-.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~P 234 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKL 234 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCC
Confidence 88899999985 78899999999876443
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.34 E-value=0.31 Score=44.37 Aligned_cols=96 Identities=10% Similarity=0.131 Sum_probs=60.0
Q ss_pred hHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----------------------HHHHHHHHHHHHHhCChHHHHHH
Q 010276 214 RWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN----------------------IHILLEMAKVDAIIGKNDEAILN 271 (514)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~~ 271 (514)
.+......|......|+.+.|...+++++...... ..+...++..+...|++.+++..
T Consensus 114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~ 193 (388)
T 2ff4_A 114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE 193 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 33444445555566789999999999998754221 01223344555566666666666
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 010276 272 FEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL 309 (514)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 309 (514)
+..++..+|-+..++..+..++...|+..+|+..|+++
T Consensus 194 l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 194 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666666666666666666666666554
No 254
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.07 E-value=0.83 Score=34.91 Aligned_cols=114 Identities=12% Similarity=0.136 Sum_probs=79.5
Q ss_pred ChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhc----CCCCHHHHHHH
Q 010276 106 NENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRH----CPFFIEAITAL 181 (514)
Q Consensus 106 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l 181 (514)
..++-...++.+++-.|.+..++-++-++ +...+.+..+.||...+++..|+.+++.+++. +|+- ++. +
T Consensus 31 ~~~eY~lL~~I~LyyngEY~R~Lf~L~~l----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~-d~~--~ 103 (242)
T 3kae_A 31 CKPEYRMLMSIVLYLNGEYTRALFHLHKL----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDV-DAR--I 103 (242)
T ss_dssp ---CTHHHHHHHHHHTTCHHHHHHHHHTC----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCC-CHH--H
T ss_pred CChHHHhhhhhhhhhcchHhHHHHHHHhc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc-ccc--c
Confidence 33456677888888999999999998876 66778888999999999999999999999943 3431 111 1
Q ss_pred HHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Q 010276 182 AELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI 249 (514)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~ 249 (514)
-..... ..+. -......|..+...|+-++|+..+.......|--+
T Consensus 104 ~~ffvd---------------------~~Dk--EfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~ 148 (242)
T 3kae_A 104 QEMFVD---------------------PGDE--EFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFS 148 (242)
T ss_dssp HTTSCC---------------------TTCH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred ceeeec---------------------cchH--HHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccc
Confidence 011111 1111 12233558888899999999999988887776543
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.94 E-value=0.36 Score=44.69 Aligned_cols=98 Identities=7% Similarity=-0.032 Sum_probs=72.4
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CC----HHH
Q 010276 350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMP--QS----AKA 419 (514)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p--~~----~~~ 419 (514)
..++..+|..+...|+++.|.+.|.++....... ..+.....++...+++..+...+.++..... .+ ...
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 4467788999999999999999998887764432 5677788888888999999888888865421 12 233
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 010276 420 LKLVGDVHASNASGREKAKKFYESALRLE 448 (514)
Q Consensus 420 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~ 448 (514)
....|.++... ++|..|...|-.++...
T Consensus 211 k~~~gl~~l~~-r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 211 KTYYGIHCLAV-RNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHGGGGT-SCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHh-ChHHHHHHHHHHHhccC
Confidence 45566677776 88988888888877643
No 256
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.66 E-value=0.036 Score=51.48 Aligned_cols=150 Identities=11% Similarity=-0.007 Sum_probs=60.2
Q ss_pred HHHhhhhhhHHHhHHHHHH---HhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhh
Q 010276 10 ALIDQGLYDSAQMLGCFLV---SSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRS 86 (514)
Q Consensus 10 ~l~~~~~~~~a~~~~~~ll---~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 86 (514)
.++.++.|+.+..++..++ .+...+...-+...+..|+..+.++-..|+.............+.|... .. -+.
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll---~~-~rt 220 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMM---KF-LKI 220 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHH---HH-HHH
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHH---HH-HHH
Confidence 4678888998888877665 2222344444556677788888777777776654433333332222110 00 000
Q ss_pred hhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcC--CCC--C--ccHHHHHHHHHHHHhcCChhhH
Q 010276 87 SLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGI--PSK--A--RNLQMSLLMAKLYRNSRHNRGA 160 (514)
Q Consensus 87 ~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~--~~~--~--~~~~~~~~l~~~~~~~g~~~~A 160 (514)
... ..-......++..+-+.|+..+.++.|..+..+. +.. + .....++.+|+++.-+++|.+|
T Consensus 221 a~l-----------r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA 289 (523)
T 4b4t_S 221 ASL-----------KHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTA 289 (523)
T ss_dssp CCS-----------CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred Hhc-----------ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHH
Confidence 000 0000123456678889999999999999999984 322 1 2245678899999999999999
Q ss_pred HHHHHHHHhcCCCC
Q 010276 161 VACYKECLRHCPFF 174 (514)
Q Consensus 161 ~~~~~~~l~~~p~~ 174 (514)
...+..+++..|.+
T Consensus 290 ~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 290 NEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHTSSCSCS
T ss_pred HHHHHHHHHhCCcc
Confidence 99999999998854
No 257
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.32 E-value=0.32 Score=45.58 Aligned_cols=79 Identities=11% Similarity=0.062 Sum_probs=70.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 010276 352 GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN 430 (514)
Q Consensus 352 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 430 (514)
.+..+|++......++.|..+|.+|..+.|+. ..++.+|.+....|+.-+|+-+|-+++......+.+..++...+...
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 56779999999999999999999999999998 89999999999999999999999999987777788888888887654
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.05 E-value=2.6 Score=44.72 Aligned_cols=82 Identities=10% Similarity=-0.105 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC-hH----HHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHH
Q 010276 418 KALKLVGDVHASNASGREKAKKFYESALRLEPGY-LG----AALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLA 492 (514)
Q Consensus 418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~----~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 492 (514)
..+..+..++.+. +.++.+++..+.|++..+.+ .. .|..+-..+...|+|++|...+...-...-....+..+.
T Consensus 900 ~YY~hv~~LFe~~-~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV 978 (1139)
T 4fhn_B 900 CYYLHLSKKLFEE-SAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHHT-SCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4455556666666 77777777777777654332 21 455666667777777777776654432221223444444
Q ss_pred HHHHHhcc
Q 010276 493 QVFAATNM 500 (514)
Q Consensus 493 ~~~~~~g~ 500 (514)
...+..|.
T Consensus 979 ~~lce~~~ 986 (1139)
T 4fhn_B 979 NQLTKQGK 986 (1139)
T ss_dssp HHHHHHCC
T ss_pred HHHHhCCC
Confidence 44444443
No 259
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.00 E-value=1.9 Score=40.28 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC
Q 010276 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQS-------AKALKLVGDVHASNASGREKAKKFYESALRLEP 449 (514)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~ 449 (514)
++.+...|...+.+++|..+..++. .|.+ ...++.+|.++... ++|.+|.+++..|+...|
T Consensus 234 ~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q-~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 234 INLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQ-LDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCC
Confidence 4444555555555555555555542 2221 23344455555555 555555555555555444
No 260
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.87 E-value=0.49 Score=44.34 Aligned_cols=75 Identities=11% Similarity=0.035 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 010276 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLK 294 (514)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 294 (514)
.+|........+..|..+|.++....|++...+..+|.+....|+.-+|+-+|-+++......+.+..++...+.
T Consensus 157 ~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 345555555556666666666666666666666666666666666666666666666554445555555554443
No 261
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.85 E-value=6.4 Score=39.98 Aligned_cols=176 Identities=11% Similarity=0.013 Sum_probs=92.6
Q ss_pred cChhHHHHHHHHHHHhc-ccC----chhHHHHHHHHHhcCChHHHHHHHHHhHhhcC-------Ch----HHHHHHHHHH
Q 010276 330 KDERGALSYAEKSIRID-ERH----IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP-------DL----RSYQGLVHSY 393 (514)
Q Consensus 330 ~~~~~A~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-------~~----~~~~~l~~~~ 393 (514)
|+.++++..+.+.+... ..+ ..+.+.+|.++...+ .++...+...+.... .. .+-..+|.++
T Consensus 388 g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 388 GNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp SCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred CchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 66667777776655421 111 223444555544443 467777777665433 11 2455677776
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHH
Q 010276 394 LQFSKVKEALYAAREAMKAMPQSA--KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDA 471 (514)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 471 (514)
...++ +++.+.+...+..+.... .+-..+|.++... |+-+-....+..+.+-..+...-...+|..+...|+.+.+
T Consensus 466 ~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGT-gn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~ 543 (963)
T 4ady_A 466 MGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGT-GKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELA 543 (963)
T ss_dssp TTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGG
T ss_pred cCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc-CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHH
Confidence 66665 456666666665332211 2345667777766 6655555555555543222111112233334456777766
Q ss_pred HHHHHHHHhhCCCc----hHHHHHHHHHHHhccHHHHHHHHHH
Q 010276 472 VSLLERYLKDWADD----SLHVKLAQVFAATNMLQEALSHYEA 510 (514)
Q Consensus 472 ~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 510 (514)
-...+.... .+++ ..-+.+|..|...|+...-...+..
T Consensus 544 ~~li~~L~~-~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~ 585 (963)
T 4ady_A 544 DDLITKMLA-SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHV 585 (963)
T ss_dssp HHHHHHHHH-CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 666665443 3333 2445567777778886444434443
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.73 E-value=3.3 Score=36.24 Aligned_cols=41 Identities=15% Similarity=0.085 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCC-CCccHHHHHHHHHHHHhcCChhhHHHHHH
Q 010276 125 KAAIVEMEGIPS-KARNLQMSLLMAKLYRNSRHNRGAVACYK 165 (514)
Q Consensus 125 ~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 165 (514)
++|+.+-.+... ...+++.+..+|..+.+.+++.+|...|-
T Consensus 119 ~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 119 KEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 455555554322 24689999999999999999999998873
No 263
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.43 E-value=2.2 Score=33.30 Aligned_cols=101 Identities=16% Similarity=0.132 Sum_probs=62.0
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHH
Q 010276 224 CCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLS 303 (514)
Q Consensus 224 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 303 (514)
.....|+++.|.++.+.+ ++...|..+|......|+++-|..+|.++-.. ..+..+|...|+.+.-.
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF--------DKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HHHHHHHHHHTCHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------HHHHHHHHHhCCHHHHH
Confidence 345678999988887765 56788888999999999999888888876332 23444555666665555
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHH
Q 010276 304 KLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEK 341 (514)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~ 341 (514)
+..+.+..... ........+..|+++++++.|.+
T Consensus 81 kla~iA~~~g~----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTRED----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTTC----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCcc----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444333211 11111112233666666666544
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.28 E-value=1 Score=41.65 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=68.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC--CCCH----HHHHHH
Q 010276 219 YVEAQCCIASNDYKGGLELFAELLQRFP---NNIHILLEMAKVDAIIGKNDEAILNFEKVRSID--PYIM----TYMDEY 289 (514)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~----~~~~~l 289 (514)
..+|..+...|+++.|.+.|.++..... ...+.+....+++...+++..+...+.++.... ..++ ......
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~ 214 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYY 214 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence 4568888899999999999988876432 236788888888888999999998888886542 1122 233445
Q ss_pred HHHHHHhCChhHHHHHHHHHhhcC
Q 010276 290 AMLLKVKCDYSKLSKLVHDLLSID 313 (514)
Q Consensus 290 ~~~~~~~~~~~~A~~~~~~~~~~~ 313 (514)
|.++...++|..|...|-.++...
T Consensus 215 gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 215 GIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhChHHHHHHHHHHHhccC
Confidence 666677788888888887776543
No 265
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.12 E-value=1.2e-05 Score=72.66 Aligned_cols=264 Identities=14% Similarity=0.147 Sum_probs=174.9
Q ss_pred CchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 010276 211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA 290 (514)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 290 (514)
.|.-|..+ |..++..+...+|++.|-++ .+|.+ +.....+..+.|++++-+.++..+-+. ...+..-..+.
T Consensus 53 ~p~VWs~L---gkAqL~~~~v~eAIdsyIkA--~Dps~---y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQL---AKAQLQKGMVKEAIDSYIKA--DDPSS---YMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELI 123 (624)
T ss_dssp CCCCSSSH---HHHTTTSSSCTTTTTSSCCC--SCCCS---SSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHH
T ss_pred CccHHHHH---HHHHHccCchHHHHHHHHhC--CChHH---HHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHH
Confidence 34445443 88888888888888877554 34433 444555666778888888888776654 33334445666
Q ss_pred HHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHH
Q 010276 291 MLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAV 370 (514)
Q Consensus 291 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 370 (514)
.+|.+.++..+-.+.+ ..|+...+...--.++..|.|+.|.-+|. +..-|..++.++..+|+|..|+
T Consensus 124 ~ayAk~~rL~elEefl-----~~~N~A~iq~VGDrcf~e~lYeAAKilys--------~isN~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 124 FALAKTNRLAELEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYN--------NVSNFGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HHHHTSCSSSTTTSTT-----SCCSSSCTHHHHHHHHHSCCSTTSSTTGG--------GSCCCTTTSSSSSSCSGGGSST
T ss_pred HHHHhhCcHHHHHHHH-----cCCCcccHHHHHHHHHHccCHHHHHHHHH--------hCccHHHHHHHHHHHHHHHHHH
Confidence 7777777765543322 13554444433344666677777765553 3445667888899999999988
Q ss_pred HHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC
Q 010276 371 IAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG 450 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~ 450 (514)
+.-+++ .+..+|.....++...+++.-|..+--..+- .|+. +-.+...|... |-+++-+..++.++.+...
T Consensus 191 daArKA----ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hade---L~elv~~YE~~-G~f~ELIsLlEaglglErA 261 (624)
T 3lvg_A 191 DGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADE---LEELINYYQDR-GYFEELITMLEAALGLERA 261 (624)
T ss_dssp TTTTTC----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSC---CSGGGSSSSTT-CCCTTSTTTHHHHTTSTTC
T ss_pred HHHHhc----CChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHH---HHHHHHHHHhC-CCHHHHHHHHHHHhCCCch
Confidence 776665 2336788888888888888877666555442 2322 12234456666 9999999999999998888
Q ss_pred ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhC--C-------CchHHHHHHHHHHHhccHHHHHH
Q 010276 451 YLGAALALAELHVIEGRNGDAVSLLERYLKDW--A-------DDSLHVKLAQVFAATNMLQEALS 506 (514)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~-------~~~~~~~l~~~~~~~g~~~~A~~ 506 (514)
+......||.+|.+- ++++-.+.++.....- | ....|..+..+|.+-.+++.|..
T Consensus 262 HmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 262 HMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp CHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 888888999888764 5666666655432211 2 22588888899999899988764
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.36 E-value=22 Score=30.85 Aligned_cols=41 Identities=5% Similarity=-0.148 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCC-CCccHHHHHHHHHHHHhcCChhhHHHHHH
Q 010276 125 KAAIVEMEGIPS-KARNLQMSLLMAKLYRNSRHNRGAVACYK 165 (514)
Q Consensus 125 ~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 165 (514)
++|+.+-.+... .-.++..+..+|..+...|++.+|...|-
T Consensus 117 ~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 117 TGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 456666665533 34689999999999999999999988775
No 267
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=81.70 E-value=3.6 Score=27.50 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=29.8
Q ss_pred ChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 38 SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 38 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
++-..+..+-.+++.+.+.|.|++||++.+++...
T Consensus 10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 45566778888999999999999999999998754
No 268
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=78.94 E-value=3.4 Score=26.51 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=28.7
Q ss_pred HHHHHhhHhhhhhHHHHHHHHHHHHhhcccCch
Q 010276 46 LIILGDSLFRDREYRRAIHTYKQALQYYKIVPK 78 (514)
Q Consensus 46 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 78 (514)
-..+|+.+..+|++++|...|-+|+..+|.-..
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 356899999999999999999999999885443
No 269
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=77.47 E-value=5.3 Score=27.18 Aligned_cols=40 Identities=15% Similarity=0.313 Sum_probs=31.4
Q ss_pred ChhhhHHHH----HHHHhhHhhhhhHHHHHHHHHHHHhhcccCc
Q 010276 38 SPHLKAENL----IILGDSLFRDREYRRAIHTYKQALQYYKIVP 77 (514)
Q Consensus 38 ~~~~~~~~~----~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 77 (514)
++....+.+ ..+|..+..+|+++.|+..|-+|+..+|.-.
T Consensus 11 ~d~e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 11 KDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 344444444 4689999999999999999999999988543
No 270
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=76.34 E-value=5.1 Score=32.30 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=35.0
Q ss_pred ChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCc
Q 010276 38 SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVP 77 (514)
Q Consensus 38 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 77 (514)
+....+.-++.+|..++.+++|.+|.+.+..|+..+|...
T Consensus 9 ~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 9 STAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred CHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 4556677889999999999999999999999999988553
No 271
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.60 E-value=41 Score=29.44 Aligned_cols=63 Identities=19% Similarity=0.016 Sum_probs=33.9
Q ss_pred cCchhHHHHHHHHHhcCChHHHHHHHHHh---------------Hhh-cCCh-HH-HHHHHHHHHhcCCHHHHHHHHHHH
Q 010276 348 RHIPGYIMKGNLLLSMKRPEAAVIAFRGA---------------QEL-RPDL-RS-YQGLVHSYLQFSKVKEALYAAREA 409 (514)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~---------------~~~-~~~~-~~-~~~l~~~~~~~~~~~~A~~~~~~~ 409 (514)
.++..+..+|..+.+.+++.+|..+|-.. ... .|.. .. .......|...++...|...++..
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f 213 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIF 213 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34566666777777777777766655210 000 1111 12 223345566777888777765554
Q ss_pred H
Q 010276 410 M 410 (514)
Q Consensus 410 ~ 410 (514)
.
T Consensus 214 ~ 214 (336)
T 3lpz_A 214 T 214 (336)
T ss_dssp H
T ss_pred H
Confidence 4
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.81 E-value=17 Score=28.95 Aligned_cols=80 Identities=8% Similarity=-0.086 Sum_probs=58.9
Q ss_pred HHHHHHHhhCCC---------CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHcCChhHHH
Q 010276 404 YAAREAMKAMPQ---------SAKALKLVGDVHASNASGREKAKKFYESALRL--EPGYLGAALALAELHVIEGRNGDAV 472 (514)
Q Consensus 404 ~~~~~~~~~~p~---------~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~ 472 (514)
.++++++....+ ...+|...+..+. . +...++...|.-.... ....+..|...|..+...|++.+|.
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~~-~-~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~ 135 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLFL-S-NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAK 135 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHHS-T-TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhhc-c-cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 578888764322 2456666666552 2 5577888888887764 4556777888999999999999999
Q ss_pred HHHHHHHhhCCCc
Q 010276 473 SLLERYLKDWADD 485 (514)
Q Consensus 473 ~~~~~~~~~~~~~ 485 (514)
++|+..++..-.+
T Consensus 136 ~Vy~~GI~~~A~P 148 (202)
T 3esl_A 136 VLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHTTCBS
T ss_pred HHHHHHHHcCCcc
Confidence 9999999987554
No 273
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=74.74 E-value=35 Score=35.26 Aligned_cols=90 Identities=13% Similarity=0.047 Sum_probs=61.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh-CC------------------
Q 010276 389 LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRL-EP------------------ 449 (514)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~-~~------------------ 449 (514)
+...+...|.++-|. +.+...|.++..-+.+|.++... |++++|..+|++|-.- .+
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~-ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKS-KEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHT-TCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence 455556666665443 34456677777777788888887 8888888888765421 10
Q ss_pred --C--ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCC
Q 010276 450 --G--YLGAALALAELHVIEGRNGDAVSLLERYLKDWA 483 (514)
Q Consensus 450 --~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 483 (514)
. ....|.....++...+-++-++...+.+++...
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~ 928 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE 928 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Confidence 0 122566788888889999999999999987653
No 274
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=71.97 E-value=6.6 Score=26.30 Aligned_cols=33 Identities=15% Similarity=0.280 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 40 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
...+..+...|...-..|+|++|+.+|..+++.
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345566777888889999999999999999876
No 275
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=70.49 E-value=22 Score=32.81 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=35.0
Q ss_pred ChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh-cccC
Q 010276 38 SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQY-YKIV 76 (514)
Q Consensus 38 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~ 76 (514)
+....+.-+|.+|+.++.+++|.+|.+.+..|+.. +|..
T Consensus 215 p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 215 QLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred CccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 45667788899999999999999999999999999 8865
No 276
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=68.95 E-value=7.5 Score=25.80 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=25.7
Q ss_pred hHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 42 KAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 42 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
.+-.+...|...-+.|+|++|+.+|.++++.
T Consensus 18 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 18 MARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3446677888888999999999999998876
No 277
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=66.61 E-value=21 Score=22.89 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=12.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 010276 389 LVHSYLQFSKVKEALYAAREAMKAMPQ 415 (514)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~~p~ 415 (514)
+|..+...|++++|..+|-+++...|+
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 344444444444444444444444433
No 278
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=65.51 E-value=9.5 Score=25.30 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=24.5
Q ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 43 AENLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
+-.+...|...-+.|+|++|+.+|.++++.
T Consensus 11 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 11 ARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 345666777788899999999999998876
No 279
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=64.59 E-value=8.2 Score=25.60 Aligned_cols=13 Identities=31% Similarity=0.355 Sum_probs=6.5
Q ss_pred CChHHHHHHHHHH
Q 010276 432 SGREKAKKFYESA 444 (514)
Q Consensus 432 ~~~~~A~~~~~~a 444 (514)
|++++|+.+|.++
T Consensus 33 g~y~eAl~lY~~a 45 (83)
T 2w2u_A 33 GNAEEAITNYKKA 45 (83)
T ss_dssp TCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 5555555544443
No 280
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=64.28 E-value=45 Score=25.46 Aligned_cols=61 Identities=11% Similarity=0.059 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHH------HHHHHHHHhCChHHHHHHHHHHHh
Q 010276 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILL------EMAKVDAIIGKNDEAILNFEKVRS 277 (514)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~------~la~~~~~~~~~~~A~~~~~~~~~ 277 (514)
..+..+..++..|+|=+|-++++.+....+.. ...+. ..|..+.+.|+...|...+.+++.
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44667888999999999999999998766543 22222 233455667888888888888766
No 281
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=62.74 E-value=1.5e+02 Score=30.73 Aligned_cols=53 Identities=19% Similarity=0.257 Sum_probs=41.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010276 113 KIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECL 168 (514)
Q Consensus 113 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 168 (514)
.+...+...|.++-|..++.-+ |.++..-+.+|+++...|++++|..+|+++-
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~---~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWL---NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGC---CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhcHHHHHHHHHhhc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3556667788888777665444 3455666999999999999999999999865
No 282
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=62.16 E-value=9.6 Score=25.29 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=6.8
Q ss_pred CChHHHHHHHHHHH
Q 010276 432 SGREKAKKFYESAL 445 (514)
Q Consensus 432 ~~~~~A~~~~~~a~ 445 (514)
|++++|+.+|..++
T Consensus 25 g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 25 GKVEDAITYYKKAI 38 (83)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 55555555444443
No 283
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=61.42 E-value=18 Score=24.61 Aligned_cols=34 Identities=15% Similarity=0.257 Sum_probs=27.9
Q ss_pred hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 39 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
....+-.+...|...-..|+|++|+.+|..+++.
T Consensus 11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3445566778888889999999999999999876
No 284
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=60.83 E-value=6.9 Score=25.53 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=25.2
Q ss_pred HHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 45 NLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 45 ~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
-...+|+-+...|+|+.|+.+|+.+++.
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 4577899999999999999999999876
No 285
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.35 E-value=63 Score=25.74 Aligned_cols=77 Identities=6% Similarity=-0.070 Sum_probs=56.1
Q ss_pred HHHHHhHhhcCC------h----HHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcCCChHHHH
Q 010276 371 IAFRGAQELRPD------L----RSYQGLVHSYLQFSKVKEALYAAREAMKA--MPQSAKALKLVGDVHASNASGREKAK 438 (514)
Q Consensus 371 ~~~~~~~~~~~~------~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~A~ 438 (514)
..+++++....+ + ..|...+..+ ..+...++..+|.-+... ....+..|...|..+... |++.+|.
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~-g~~~~A~ 135 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENA-QFFLEAK 135 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHT-TCHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 567777664322 1 2455555544 234477889999888764 456688888999999998 9999999
Q ss_pred HHHHHHHhhCC
Q 010276 439 KFYESALRLEP 449 (514)
Q Consensus 439 ~~~~~a~~~~~ 449 (514)
..|+..++...
T Consensus 136 ~Vy~~GI~~~A 146 (202)
T 3esl_A 136 VLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 99999998653
No 286
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=58.05 E-value=38 Score=22.44 Aligned_cols=33 Identities=33% Similarity=0.526 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 40 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
...++++...|.-+++.++|.+|...|+++...
T Consensus 50 e~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 50 EKKARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 356788899999999999999999999999865
No 287
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=56.62 E-value=78 Score=29.23 Aligned_cols=62 Identities=6% Similarity=-0.019 Sum_probs=49.8
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCC--------C--cHHHHHHHHHHHHHhCChHHHHHHHHHHHhh-CCCC
Q 010276 221 EAQCCIASNDYKGGLELFAELLQRFP--------N--NIHILLEMAKVDAIIGKNDEAILNFEKVRSI-DPYI 282 (514)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~p--------~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~ 282 (514)
+-.+|++.++..-+..+++.+-...+ . .....+.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 182 L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 182 LNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 35789999999999999987655432 1 1467888999999999999999999999988 6654
No 288
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=56.22 E-value=23 Score=23.51 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=26.2
Q ss_pred hhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 41 LKAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 41 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
..+..+...|...-..|+|++|+.+|..+++.
T Consensus 11 ~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 11 TKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44556677777788889999999999999886
No 289
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=55.55 E-value=24 Score=23.65 Aligned_cols=28 Identities=29% Similarity=0.157 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 010276 249 IHILLEMAKVDAIIGKNDEAILNFEKVR 276 (514)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~ 276 (514)
+..+..++..+...|+|++|+++.+++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 3455566777777777777777766654
No 290
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.49 E-value=70 Score=24.13 Aligned_cols=50 Identities=18% Similarity=0.142 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhh--CCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276 436 KAKKFYESALRL--EPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 436 ~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (514)
++...|.-.... ....+..|...|..+...|++.+|.++|+..++....+
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 366777766653 44556677778888888899999999999888876544
No 291
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=53.31 E-value=67 Score=23.84 Aligned_cols=119 Identities=11% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--------------------HHhcCCChHHHHHHHHHHHhhCC
Q 010276 390 VHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDV--------------------HASNASGREKAKKFYESALRLEP 449 (514)
Q Consensus 390 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--------------------~~~~~~~~~~A~~~~~~a~~~~~ 449 (514)
+.-..-.|..++..+...+.....|-...-|+..-.+ ...- |+...-+.+|-+ ..
T Consensus 14 AK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C-~NlKrVi~C~~~----~n 88 (172)
T 1wy6_A 14 AKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKC-QNLKSVVECGVI----NN 88 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGC-SCTHHHHHHHHH----TT
T ss_pred HHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhh-hcHHHHHHHHHH----hc
Q ss_pred CChHHHHHHHHHHHHcCChhHHHHHHHH-HHhhCCCchHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 450 GYLGAALALAELHVIEGRNGDAVSLLER-YLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
.+.+....--..+..+|+.++-.+.+.. .-...|+++++..+|..|.+.|+..+|.+.+.+|.+
T Consensus 89 ~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 89 TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
No 292
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=51.62 E-value=1.2e+02 Score=26.27 Aligned_cols=27 Identities=19% Similarity=-0.174 Sum_probs=17.8
Q ss_pred cCchhHHHHHHHHHhcCChHHHHHHHH
Q 010276 348 RHIPGYIMKGNLLLSMKRPEAAVIAFR 374 (514)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~A~~~~~ 374 (514)
.++..+..+|..+.+.|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 355666777777777777777766653
No 293
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=49.36 E-value=23 Score=25.34 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=25.9
Q ss_pred hhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 41 LKAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 41 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
..+..+...|...-..|+|++|+.+|..+++.
T Consensus 16 ~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 16 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34555677777778889999999999999886
No 294
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=48.90 E-value=48 Score=26.54 Aligned_cols=33 Identities=3% Similarity=-0.250 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC
Q 010276 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI 282 (514)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 282 (514)
...+.+|.+++..++|.+|.+.+..++...|..
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 345556666666666666666666666655543
No 295
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=48.80 E-value=1.1e+02 Score=24.91 Aligned_cols=82 Identities=6% Similarity=-0.127 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhCCCCHH----HHHHHHHHHHhcCCChHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHcCChhHHHHHH
Q 010276 402 ALYAAREAMKAMPQSAK----ALKLVGDVHASNASGREKAKKFYESALRL--EPGYLGAALALAELHVIEGRNGDAVSLL 475 (514)
Q Consensus 402 A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~ 475 (514)
=..++++++....++.. ..+..-.+... ...+.+...|.-.... .-..+..|...|..+...|++.+|..+|
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya--~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy 173 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQYV--NYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVY 173 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHH--TTCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHH--HccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35677788776654421 11222222111 2234666677766654 4555677788889999999999999999
Q ss_pred HHHHhhCCCc
Q 010276 476 ERYLKDWADD 485 (514)
Q Consensus 476 ~~~~~~~~~~ 485 (514)
+..++..-.+
T Consensus 174 ~~Gi~~~A~P 183 (223)
T 4aez_C 174 QKGKRMKAKP 183 (223)
T ss_dssp HHHHHHTCBS
T ss_pred HHHHHcCCcc
Confidence 9999877554
No 296
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=48.47 E-value=21 Score=24.25 Aligned_cols=14 Identities=21% Similarity=0.320 Sum_probs=6.4
Q ss_pred CChHHHHHHHHHHH
Q 010276 432 SGREKAKKFYESAL 445 (514)
Q Consensus 432 ~~~~~A~~~~~~a~ 445 (514)
|++++|+.+|..++
T Consensus 29 g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 29 SRYQQALVCYQEGI 42 (93)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444433
No 297
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=47.36 E-value=52 Score=22.35 Aligned_cols=57 Identities=14% Similarity=-0.116 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhCCCChH------HHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276 422 LVGDVHASNASGREKAKKFYESALRLEPGYLG------AALALAELHVIEGRNGDAVSLLERYLKD 481 (514)
Q Consensus 422 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (514)
..|..++.. |+|=+|-+.++..-...|+... +....|......|+. |...+.+++..
T Consensus 6 ~~~~~lfn~-g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~ 68 (94)
T 2cwy_A 6 EEVLGLWRA-GRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEAR 68 (94)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred HHHHHHHhC-CChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHH
Confidence 345566666 8888888888888777654211 222334444566777 88888888773
No 298
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=44.87 E-value=1.6e+02 Score=25.95 Aligned_cols=27 Identities=7% Similarity=-0.109 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHH
Q 010276 452 LGAALALAELHVIEGRNGDAVSLLERY 478 (514)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~~ 478 (514)
...+..+|-.+++.+++.+|+..+-.+
T Consensus 296 vYPYtylgGy~yR~~~~reAl~~WA~A 322 (472)
T 3re2_A 296 IYPYTYLGGYYYRKKKYYEAIASWVDA 322 (472)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhcchHHHHHHHHHHH
Confidence 334444444555555555555544444
No 299
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=44.83 E-value=71 Score=21.69 Aligned_cols=57 Identities=18% Similarity=0.203 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-H-----HHHHHHHHHHHhCChHHHHHHHHHHHh
Q 010276 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNI-H-----ILLEMAKVDAIIGKNDEAILNFEKVRS 277 (514)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-~-----~~~~la~~~~~~~~~~~A~~~~~~~~~ 277 (514)
+..|..++..|+|=+|-+.++.+-...|+.. . +....|..+...|+. |...+.+++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 3457788888999999999998888775431 1 222234445556776 7777777765
No 300
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=44.64 E-value=27 Score=23.20 Aligned_cols=14 Identities=29% Similarity=0.290 Sum_probs=6.9
Q ss_pred CChHHHHHHHHHHH
Q 010276 432 SGREKAKKFYESAL 445 (514)
Q Consensus 432 ~~~~~A~~~~~~a~ 445 (514)
|++++|+.+|..++
T Consensus 27 g~y~eAl~~Y~~ai 40 (85)
T 2v6x_A 27 TQYEEAYTAYYNGL 40 (85)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555444443
No 301
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=43.74 E-value=45 Score=21.73 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=19.6
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 010276 216 LHRYVEAQCCIASNDYKGGLELFAELLQ 243 (514)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 243 (514)
.....+|+-+...|+|+.|+.+|+.+++
T Consensus 13 ~e~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 13 VENVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3344557777777888888877777765
No 302
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=40.61 E-value=1.6e+02 Score=24.45 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHhhcCCC-ChHHHHHHHHHHhh--cChhHHHHHHH
Q 010276 285 YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS-RPEVFVALSVLWER--KDERGALSYAE 340 (514)
Q Consensus 285 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~--~~~~~A~~~~~ 340 (514)
-+..++.+..+.++|++.....+++...++. +.+-...+..+|.. |....+.+.+.
T Consensus 6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiis 64 (248)
T 3uzd_A 6 QLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVIS 64 (248)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 3445566666677777777777766665543 23444445555544 44444444443
No 303
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=40.04 E-value=1.6e+02 Score=24.54 Aligned_cols=47 Identities=26% Similarity=0.231 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHh----hCCCChH---HHHHHHHHHHH-cCChhHHHHHHHHHHhh
Q 010276 435 EKAKKFYESALR----LEPGYLG---AALALAELHVI-EGRNGDAVSLLERYLKD 481 (514)
Q Consensus 435 ~~A~~~~~~a~~----~~~~~~~---~~~~la~~~~~-~g~~~~A~~~~~~~~~~ 481 (514)
+.|...|++|.. +.|.+|- ...+.+..|+. +++.++|....++++..
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 227 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEM 227 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566677777664 4555543 23334444443 68888888887777653
No 304
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=39.17 E-value=76 Score=21.59 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 010276 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNN 248 (514)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~ 248 (514)
....+|..+...|+++.|+..|-+++...|.-
T Consensus 22 ~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 22 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 33456777777788887777777776665543
No 305
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=38.92 E-value=26 Score=25.03 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=7.0
Q ss_pred CChHHHHHHHHHHH
Q 010276 432 SGREKAKKFYESAL 445 (514)
Q Consensus 432 ~~~~~A~~~~~~a~ 445 (514)
|++++|+.+|..++
T Consensus 32 g~y~eAl~lY~~Ai 45 (117)
T 2cpt_A 32 GNYEEALQLYQHAV 45 (117)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 55555555554444
No 306
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=38.88 E-value=1.1e+02 Score=26.88 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHh-----cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhh
Q 010276 334 GALSYAEKSIRI-----DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL 379 (514)
Q Consensus 334 ~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 379 (514)
.++..|.+++.. ...+...+..+|..+++.+++.+|+..+-.+-..
T Consensus 275 ~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 275 PAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 355566666543 2334566777888888899999998888777543
No 307
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=37.29 E-value=1.7e+02 Score=23.98 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHhhcCCC-ChHHHHHHHHHHhh--cChhHHHHHHHH
Q 010276 284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS-RPEVFVALSVLWER--KDERGALSYAEK 341 (514)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~--~~~~~A~~~~~~ 341 (514)
+-+..++.+..+.++|++.....+++...++. +.+-...+..+|.. |....+...+..
T Consensus 9 e~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiiss 69 (236)
T 3iqu_A 9 ASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSS 69 (236)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 34555666667777777777777776665543 23444555555554 444455554443
No 308
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=37.14 E-value=1.7e+02 Score=23.96 Aligned_cols=46 Identities=20% Similarity=0.109 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHh-----hCCCChH---HHHHHHHHHHH-cCChhHHHHHHHHHHh
Q 010276 435 EKAKKFYESALR-----LEPGYLG---AALALAELHVI-EGRNGDAVSLLERYLK 480 (514)
Q Consensus 435 ~~A~~~~~~a~~-----~~~~~~~---~~~~la~~~~~-~g~~~~A~~~~~~~~~ 480 (514)
+.|...|++|+. +.|.+|- ...+.+..|+. +++.++|....++++.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566667776664 4666653 23334444443 7888888887777765
No 309
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=36.99 E-value=1.6e+02 Score=23.64 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=25.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 010276 390 VHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN 430 (514)
Q Consensus 390 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 430 (514)
..++.+.|.+++|.+.+++....+|.+......+..+-...
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~K 161 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREK 161 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhcc
Confidence 45556677777777777777766655555555555554443
No 310
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=36.86 E-value=1.4e+02 Score=22.78 Aligned_cols=60 Identities=15% Similarity=-0.179 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCCC---H---HHHHH---HHHHHHHhCChhHHHHHHHHHhh
Q 010276 252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPYI---M---TYMDE---YAMLLKVKCDYSKLSKLVHDLLS 311 (514)
Q Consensus 252 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~---~~~~~---l~~~~~~~~~~~~A~~~~~~~~~ 311 (514)
-+..+..++..|+|-+|-+.++.+-...+.. . ..+.. .|......|+...|..++.+++.
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3456777888899999999999998776544 1 22222 33345667888888888887765
No 311
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.94 E-value=33 Score=24.34 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhh
Q 010276 399 VKEALYAAREAMKA 412 (514)
Q Consensus 399 ~~~A~~~~~~~~~~ 412 (514)
+++|..+..+++..
T Consensus 19 h~~AF~~Is~AL~~ 32 (116)
T 2dl1_A 19 YKKAFLFVNKGLNT 32 (116)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 34444555554443
No 312
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=35.41 E-value=3.3e+02 Score=26.65 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC
Q 010276 111 KYKIASCHFALGETKAAIVEMEGIP 135 (514)
Q Consensus 111 ~~~la~~~~~~g~~~~A~~~~~~~~ 135 (514)
...+....++.|.+++|.++.+...
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~~ 179 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVENK 179 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTG
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhh
Confidence 3344556679999999999888753
No 313
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=35.40 E-value=2e+02 Score=24.07 Aligned_cols=46 Identities=20% Similarity=0.109 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHh-----hCCCChH---HHHHHHHHHHH-cCChhHHHHHHHHHHh
Q 010276 435 EKAKKFYESALR-----LEPGYLG---AALALAELHVI-EGRNGDAVSLLERYLK 480 (514)
Q Consensus 435 ~~A~~~~~~a~~-----~~~~~~~---~~~~la~~~~~-~g~~~~A~~~~~~~~~ 480 (514)
+.|...|++|.. +.|.+|- ...+.+..|+. ++++++|....++++.
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666654 4566653 23334444443 6888888877777655
No 314
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=34.83 E-value=1.5e+02 Score=22.51 Aligned_cols=86 Identities=10% Similarity=0.121 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHhCChH-HHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 010276 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNN--IHILLEMAKVDAIIGKND-EAILNFEKVRSIDPYIMTYMDEYAMLLK 294 (514)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 294 (514)
.+..+...+-..+|...+..++.. +|.. ....+.+|..|....... +..+.....+.+.. +-.+.+=+++.
T Consensus 11 a~i~a~~afl~~dYs~VI~~L~~~---~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkS---de~yL~YWIyi 84 (161)
T 2ynq_A 11 AYIQSTELFLQNKYSDVITTLEDY---APEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKT---DEQYMLYWIYI 84 (161)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHTTS---CGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTS---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcC---ChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccC---CHHHHHHHHHH
Confidence 356688888889999998888764 4433 567888999999887655 33333333333222 12233446677
Q ss_pred HhCChhHHHHHHHHH
Q 010276 295 VKCDYSKLSKLVHDL 309 (514)
Q Consensus 295 ~~~~~~~A~~~~~~~ 309 (514)
-.|++++|+.+...+
T Consensus 85 GRg~~~eAlDiA~~L 99 (161)
T 2ynq_A 85 GRSQSEEALELARTI 99 (161)
T ss_dssp HHTCHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHhc
Confidence 789999999887765
No 315
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=34.68 E-value=2.3e+02 Score=24.61 Aligned_cols=32 Identities=19% Similarity=0.076 Sum_probs=25.8
Q ss_pred hhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 010276 213 SRWLHRYVEAQCCIASNDYKGGLELFAELLQR 244 (514)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 244 (514)
......+..|..+...|++.+|+..|+.++..
T Consensus 112 ~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~ 143 (325)
T 3mv2_A 112 DVVNEKMNEGYKNFKLNKPDIAIECFREAIYR 143 (325)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 33444567788889999999999999999864
No 316
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=34.03 E-value=1.9e+02 Score=23.49 Aligned_cols=53 Identities=9% Similarity=-0.081 Sum_probs=40.7
Q ss_pred CCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 010276 122 GETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFF 174 (514)
Q Consensus 122 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 174 (514)
.+..+-...+..-.........|...|..+...|++.+|..+|+..++..-.-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45555555554444456788889999999999999999999999999876543
No 317
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=33.73 E-value=1.9e+02 Score=23.33 Aligned_cols=67 Identities=10% Similarity=0.079 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhCCCcHH--------HHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 010276 231 YKGGLELFAELLQRFPNNIH--------ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (514)
Q Consensus 231 ~~~A~~~~~~~~~~~p~~~~--------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (514)
.+.|+.+++.+-+..+-... +......++.+.|.+++|.+.+++....+|.+......|..+-...+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Confidence 35677777776665543211 11223445678899999999999998877776666666665554444
No 318
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=33.49 E-value=2.7e+02 Score=25.15 Aligned_cols=30 Identities=13% Similarity=0.040 Sum_probs=16.0
Q ss_pred ChHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 010276 451 YLGAALALAELHVIEGRNGDAVSLLERYLK 480 (514)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (514)
+...+..+|-.+++.+++.+|+..+-.+-.
T Consensus 317 HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 317 HIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 344455555555555555555555555433
No 319
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.01 E-value=2.5e+02 Score=25.19 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=10.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHH
Q 010276 457 ALAELHVIEGRNGDAVSLLERY 478 (514)
Q Consensus 457 ~la~~~~~~g~~~~A~~~~~~~ 478 (514)
.++..+...|+.++|...++++
T Consensus 132 ~i~~~yl~~~d~~~a~~~l~~~ 153 (393)
T 4b4t_O 132 EIARTYLLKNDLVKARDLLDDL 153 (393)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHH
Confidence 3444444455555555444444
No 320
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=31.50 E-value=69 Score=21.29 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Q 010276 218 RYVEAQCCIASNDYKGGLELFAELLQ 243 (514)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~ 243 (514)
....|.-.-..|++++|+.+|..+++
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34446666667777777777776654
No 321
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=30.05 E-value=92 Score=30.51 Aligned_cols=49 Identities=16% Similarity=0.014 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 010276 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (514)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (514)
+.....|...+..|+|.-|.+..+.++..+|++..+...++.++.++|.
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3444455555556666666666666666666666666666666555553
No 322
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=29.90 E-value=5.6e+02 Score=27.65 Aligned_cols=148 Identities=11% Similarity=0.045 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcC--------------------------------
Q 010276 351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFS-------------------------------- 397 (514)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~-------------------------------- 397 (514)
++...+=...+..-+.+++.++|++.++..|++ .++..+...+....
T Consensus 1108 e~~rd~~~~~~~k~~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1187 (1354)
T 3lxu_X 1108 ESFRDFQCSQIVKCELEMAEKIYNDVVAAHPKHLQANLLLIQNIESNQLKSQLPLTFVNAQKTSPPEAGESADKQKEDQK 1187 (1354)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHSSCCCCHHHHHHTTSCCCSSCTTHHHHTTHHHH
T ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHCCccHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccchhhh
Q ss_pred ----CHHHHHHHHHHHHhhCCCCH------------------------------HHHHH----HHHHHHhcCCChHHHHH
Q 010276 398 ----KVKEALYAAREAMKAMPQSA------------------------------KALKL----VGDVHASNASGREKAKK 439 (514)
Q Consensus 398 ----~~~~A~~~~~~~~~~~p~~~------------------------------~~~~~----l~~~~~~~~~~~~~A~~ 439 (514)
..++-++...+++..-..+. +++.. ++...... ...++...
T Consensus 1188 ~~~~~~~~ii~~ad~vi~~id~~~l~~~~g~k~d~~~~a~k~k~~m~~~k~~l~~al~~k~~ala~~~~~~-~~~~~~~~ 1266 (1354)
T 3lxu_X 1188 KVRSALERIVKLADKVIQETDSEALLSYYGLKNDTRADAAKIKTNMDKQKNTLIEALSKKGIAVAKLAVLD-DCIKDSLA 1266 (1354)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHTTTSTTCCSTHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCSGGGHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhHHH
Q ss_pred HHHHHHh-----hCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHhc
Q 010276 440 FYESALR-----LEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATN 499 (514)
Q Consensus 440 ~~~~a~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 499 (514)
.+.++.. .++.+..+.....+-....|+|-.|++++.++++..|.-+.+..++.++..+|
T Consensus 1267 ~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k~~~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1267 EINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEKRTRDHFVELAAINGALG 1331 (1354)
T ss_dssp HHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHcC
No 323
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=29.36 E-value=2.8e+02 Score=24.05 Aligned_cols=116 Identities=10% Similarity=0.019 Sum_probs=63.8
Q ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchh--------hhh--hhhhhhhccccCCCCcccccccCChhHHHH
Q 010276 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQ--------NST--SSRSSLSTSNRSSSPNSFNVSAINENEVKY 112 (514)
Q Consensus 43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 112 (514)
...-+..|..++..|+|.+|+..|+.++..-|-..-. ... ..+-|. .-...
T Consensus 114 L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYi-------------------lal~i 174 (325)
T 3mv2_A 114 VNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYI-------------------LGLSI 174 (325)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHH-------------------HHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHH-------------------HHHHH
Confidence 3445678999999999999999999999875422100 000 001110 00001
Q ss_pred HHHHHHHhcCCHHHHHH---HHhcCCCCCcc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHH
Q 010276 113 KIASCHFALGETKAAIV---EMEGIPSKARN-LQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEA 177 (514)
Q Consensus 113 ~la~~~~~~g~~~~A~~---~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 177 (514)
.+.+--+...+....++ +|......|.+ .-++..--...++.++|.-|...-++.++..|....+
T Consensus 175 El~Rr~l~~~~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a 243 (325)
T 3mv2_A 175 ELERRSLKEGNTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRA 243 (325)
T ss_dssp HHHHHTCCTTCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHH
T ss_pred HHHHHhcCcccHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHH
Confidence 11111111123333332 33333333332 2233333456678999999999999999999865443
No 324
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=28.32 E-value=79 Score=22.03 Aligned_cols=33 Identities=9% Similarity=-0.018 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 40 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
..++.++..-|-...+.|+|++|.+.++++-+.
T Consensus 17 aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~~ 49 (105)
T 2e2a_A 17 AGDARSKLLEALKAAENGDFAKADSLVVEAGSC 49 (105)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456778888888899999999999999998654
No 325
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=27.82 E-value=82 Score=21.85 Aligned_cols=33 Identities=12% Similarity=0.017 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 40 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
...+.++..-|-...+.|+|++|.+.++++-+.
T Consensus 15 aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~~ 47 (103)
T 1wcr_A 15 SGQARSLAYAALKQAKQGDFAAAKAMMDQSRMA 47 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456778888888899999999999999998654
No 326
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=27.21 E-value=1.3e+02 Score=29.45 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=19.6
Q ss_pred HHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh
Q 010276 290 AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER 329 (514)
Q Consensus 290 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 329 (514)
+......|++.-|.++...++..+|++..+...++.++.+
T Consensus 456 a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~ 495 (658)
T 2cfu_A 456 ARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQ 495 (658)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 3333444555555555555555555555554444444444
No 327
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=27.08 E-value=2.6e+02 Score=22.93 Aligned_cols=25 Identities=8% Similarity=0.104 Sum_probs=11.4
Q ss_pred HHHHHHhh-cChhHHHHHHHHHHHhc
Q 010276 322 ALSVLWER-KDERGALSYAEKSIRID 346 (514)
Q Consensus 322 ~l~~~~~~-~~~~~A~~~~~~~~~~~ 346 (514)
.++.+..+ ++|++.+.+..++...+
T Consensus 13 ~~AklaeqaeRyddM~~~mk~v~~~~ 38 (236)
T 3iqu_A 13 QKAKLAEQAERYEDMAAFMKGAVEKG 38 (236)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 33443333 55555555554444443
No 328
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=26.60 E-value=2.2e+02 Score=25.67 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHh-----cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhh
Q 010276 334 GALSYAEKSIRI-----DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL 379 (514)
Q Consensus 334 ~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 379 (514)
.++..|.+++.. ...+...|..+|..+++.+++.+|+..+-.+-..
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 355556555543 2234566777888888888888888888776543
No 329
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=25.50 E-value=2.9e+02 Score=22.89 Aligned_cols=28 Identities=11% Similarity=0.268 Sum_probs=14.0
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCC
Q 010276 253 LEMAKVDAIIGKNDEAILNFEKVRSIDP 280 (514)
Q Consensus 253 ~~la~~~~~~~~~~~A~~~~~~~~~~~~ 280 (514)
..+|.+..+.++|++...+.+++...++
T Consensus 8 v~~AklaeqaeRyddM~~~Mk~v~~~~~ 35 (248)
T 3uzd_A 8 VQKARLAEQAERYDDMAAAMKNVTELNE 35 (248)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 3444555555555555555555554443
No 330
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=25.47 E-value=2.4e+02 Score=25.49 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhc-----ccCchhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 010276 334 GALSYAEKSIRID-----ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQE 378 (514)
Q Consensus 334 ~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 378 (514)
.++..|.+++... ..+...|..+|..+++.+++.+|+..+..+-.
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 3445555555432 23345566677777778888888877777644
No 331
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=24.33 E-value=1e+02 Score=21.65 Aligned_cols=33 Identities=9% Similarity=-0.002 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 40 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
...+.+...-|-...+.|+|++|.+.++++-+.
T Consensus 19 aG~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~~~ 51 (109)
T 3k1s_A 19 SGNARSFAMEALQFAKQGKMAEADEAMVKAKEA 51 (109)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455677888888889999999999999988654
No 332
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=23.44 E-value=2.5e+02 Score=21.46 Aligned_cols=57 Identities=16% Similarity=0.091 Sum_probs=43.7
Q ss_pred CCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHH
Q 010276 122 GETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAI 178 (514)
Q Consensus 122 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 178 (514)
+++.+-...+..-.........|...|..+...|++.+|..+|+..++.......-+
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 566655555555444567888999999999999999999999999998775444433
No 333
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=23.26 E-value=1.2e+02 Score=22.73 Aligned_cols=37 Identities=8% Similarity=0.094 Sum_probs=29.2
Q ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHhh----cccCchh
Q 010276 43 AENLIILGDSLFRDREYRRAIHTYKQALQY----YKIVPKQ 79 (514)
Q Consensus 43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~ 79 (514)
+..++..|..|...|+++.|.-.|-+...+ -|.+|++
T Consensus 40 a~~llr~A~~y~~egd~e~AYily~R~~~L~~e~IpkHpdy 80 (146)
T 2xze_A 40 GVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLPKHRDY 80 (146)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGGGSTTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcccCccc
Confidence 457788899999999999999999986544 4655544
No 334
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=22.83 E-value=1e+02 Score=22.10 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=28.2
Q ss_pred hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 39 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
...++.++..-|-...+.|+|++|.+.++++-+.
T Consensus 33 ~aG~ARS~~~eAl~~Ak~gdfe~A~~~l~eA~e~ 66 (120)
T 3l8r_A 33 NSGNARSIVHEAFDAMREKNYILAEQKLQEANDE 66 (120)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456778888888899999999999999998654
No 335
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=22.36 E-value=4.4e+02 Score=23.89 Aligned_cols=29 Identities=10% Similarity=0.123 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 010276 417 AKALKLVGDVHASNASGREKAKKFYESALR 446 (514)
Q Consensus 417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~ 446 (514)
...+..+|..+.+. +++.+|+..+..+-.
T Consensus 303 vYPYtYlgG~~~R~-~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 303 IYPYMYLAGYHCRN-RNVREALQAWADTAT 331 (489)
T ss_dssp SHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred ccceeecchHHHHh-hhHHHHHHHhhhhhh
Confidence 33444445555554 555555555555444
No 336
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=22.30 E-value=5.6e+02 Score=25.06 Aligned_cols=22 Identities=14% Similarity=-0.150 Sum_probs=17.0
Q ss_pred HHHHHHHHhCChHHHHHHHHHH
Q 010276 254 EMAKVDAIIGKNDEAILNFEKV 275 (514)
Q Consensus 254 ~la~~~~~~~~~~~A~~~~~~~ 275 (514)
..-.++.-.|+++.|+.++-+.
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~ 320 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF 320 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc
Confidence 3566777889999999887754
No 337
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=22.13 E-value=2.6e+02 Score=21.20 Aligned_cols=49 Identities=12% Similarity=0.107 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChh
Q 010276 110 VKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNR 158 (514)
Q Consensus 110 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 158 (514)
-.+.-+...+-..+|...+..++.+....-.....+.+|..|....++.
T Consensus 10 ~a~i~a~~afl~~dYs~VI~~L~~~~~~~Lp~~~kY~LA~SYI~~e~Ls 58 (161)
T 2ynq_A 10 EAYIQSTELFLQNKYSDVITTLEDYAPEDMPYVIQYELASSYVMTESLT 58 (161)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTTSCGGGSCHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCChhhCChhHHHHHHHHHHHccCCC
Confidence 3445566777889999999999998777667788899999999877665
No 338
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=22.04 E-value=2.6e+02 Score=21.07 Aligned_cols=57 Identities=7% Similarity=-0.087 Sum_probs=41.3
Q ss_pred CCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHH
Q 010276 122 GETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAI 178 (514)
Q Consensus 122 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 178 (514)
.++.+-...+..-.........|...|..+...|++.+|..+|+..++......+-+
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL 138 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFL 138 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 344444444444333467888899999999999999999999999998765444433
No 339
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=21.91 E-value=3.5e+02 Score=22.59 Aligned_cols=54 Identities=15% Similarity=0.083 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHhhcC--CC-ChHHHHHHHHHHhh--cChhHHHHHH
Q 010276 286 MDEYAMLLKVKCDYSKLSKLVHDLLSID--PS-RPEVFVALSVLWER--KDERGALSYA 339 (514)
Q Consensus 286 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~l~~~~~~--~~~~~A~~~~ 339 (514)
+..++.+..+.++|++.....+++...+ +. +.+-...+..+|.. |....+.+.+
T Consensus 11 ~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRii 69 (260)
T 1o9d_A 11 NVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRII 69 (260)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 3445555555566666666666555544 22 23334444444443 4333444443
No 340
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=21.54 E-value=3.6e+02 Score=22.54 Aligned_cols=28 Identities=21% Similarity=0.150 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhC
Q 010276 252 LLEMAKVDAIIGKNDEAILNFEKVRSID 279 (514)
Q Consensus 252 ~~~la~~~~~~~~~~~A~~~~~~~~~~~ 279 (514)
+..++.+..+.++|++...+.+++.+.+
T Consensus 31 ~v~~AkLaeqaeRyddmv~~mk~v~~~~ 58 (260)
T 2npm_A 31 NVYMAKLAEQAERYDEMAKYMKDVVEAR 58 (260)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 3344555555566666666666555543
No 341
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.31 E-value=1.5e+02 Score=23.51 Aligned_cols=27 Identities=26% Similarity=0.065 Sum_probs=12.4
Q ss_pred HHHHHhCChHHHHHHHHHHHhhCCCCH
Q 010276 257 KVDAIIGKNDEAILNFEKVRSIDPYIM 283 (514)
Q Consensus 257 ~~~~~~~~~~~A~~~~~~~~~~~~~~~ 283 (514)
.++.+.|.+++|.+.+++....++.+.
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~~~~~ 151 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDPNSHM 151 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CC
T ss_pred HHHHHccchHHHHHHHHHHhcCCCCch
Confidence 345555666666666666555554443
No 342
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=21.19 E-value=1.7e+02 Score=26.92 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=29.3
Q ss_pred hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 39 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
......++.++|++++..|+|++|+...++++..
T Consensus 186 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 186 RMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 3445568889999999999999999999999975
No 343
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.03 E-value=3e+02 Score=21.48 Aligned_cols=185 Identities=14% Similarity=-0.017 Sum_probs=101.5
Q ss_pred ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHh
Q 010276 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376 (514)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 376 (514)
...+++..+.+.+. + .++.........+.. +. ..++..+.+.+. ++ ++.........+...+. .+++..+.+.
T Consensus 16 ~~~~~~~~L~~~L~-~-~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~-~~-~~~vr~~a~~aL~~~~~-~~~~~~L~~~ 89 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQ-D-DSYYVRRAAAYALGKIGD-ERAVEPLIKALK-DE-DAWVRRAAADALGQIGD-ERAVEPLIKA 89 (211)
T ss_dssp CCGGGHHHHHHHTT-C-SSHHHHHHHHHHHHHHCC-GGGHHHHHHHTT-CS-CHHHHHHHHHHHHHHCC-GGGHHHHHHH
T ss_pred cCHhHHHHHHHHHc-C-CCHHHHHHHHHHHHHhCC-ccHHHHHHHHHc-CC-CHHHHHHHHHHHHhhCC-HHHHHHHHHH
Confidence 34566666666665 3 344444444444433 43 466666666665 22 45555555555555565 3455555555
Q ss_pred HhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHH
Q 010276 377 QELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAAL 456 (514)
Q Consensus 377 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 456 (514)
+. +++..........+...++. +++..+.+++ ...++.+.......+... +. .+++..+.+.+. + .++.+..
T Consensus 90 l~-~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l--~d~~~~vr~~a~~aL~~~-~~-~~~~~~L~~~l~-d-~~~~vr~ 161 (211)
T 3ltm_A 90 LK-DEDGWVRQSAAVALGQIGDE-RAVEPLIKAL--KDEDWFVRIAAAFALGEI-GD-ERAVEPLIKALK-D-EDGWVRQ 161 (211)
T ss_dssp TT-CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHT--TCSSHHHHHHHHHHHHHH-CC-GGGHHHHHHHTT-C-SSHHHHH
T ss_pred Hc-CCCHHHHHHHHHHHHHhCcH-HHHHHHHHHH--hCCCHHHHHHHHHHHHHc-CC-HHHHHHHHHHHc-C-CCHHHHH
Confidence 43 44444444445555555553 4555565555 234466666666666665 54 346666666552 3 3466777
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHh
Q 010276 457 ALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAAT 498 (514)
Q Consensus 457 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 498 (514)
.....+...+. .+++..+.+.++. ++..+.......+...
T Consensus 162 ~a~~aL~~~~~-~~~~~~L~~~l~d-~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 162 SAADALGEIGG-ERVRAAMEKLAET-GTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHHHHCS-HHHHHHHHHHHHH-CCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhCc-hhHHHHHHHHHhC-CCHHHHHHHHHHHHhc
Confidence 77777777765 5678888887763 4444444444444333
No 344
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=20.82 E-value=3.5e+02 Score=22.16 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=11.3
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHhh
Q 010276 254 EMAKVDAIIGKNDEAILNFEKVRSI 278 (514)
Q Consensus 254 ~la~~~~~~~~~~~A~~~~~~~~~~ 278 (514)
.++.+..+.++|++...+.+++.+.
T Consensus 10 ~~AklaeqaeRyddm~~~mk~v~~~ 34 (234)
T 2br9_A 10 YQAKLAEQAERYDEMVESMKKVAGM 34 (234)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCHHHHHHHHHHHhcc
Confidence 3344444444444444444444443
No 345
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.20 E-value=98 Score=24.48 Aligned_cols=38 Identities=11% Similarity=0.302 Sum_probs=25.3
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 010276 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVD 259 (514)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 259 (514)
..+++..|.+++|.+++++....++.+......|..+-
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II 161 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMII 161 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 56789999999999999999887776655554444443
Done!