Query 010278
Match_columns 514
No_of_seqs 429 out of 3391
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 22:39:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5256 TEF1 Translation elong 100.0 3E-99 7E-104 747.3 41.0 424 79-509 3-428 (428)
2 PLN00043 elongation factor 1-a 100.0 6.5E-87 1.4E-91 698.9 49.9 429 79-512 3-434 (447)
3 KOG0459 Polypeptide release fa 100.0 5.2E-88 1.1E-92 658.2 33.0 427 78-509 74-501 (501)
4 PTZ00141 elongation factor 1- 100.0 2.1E-85 4.5E-90 688.0 50.9 428 79-511 3-433 (446)
5 KOG0458 Elongation factor 1 al 100.0 6E-84 1.3E-88 658.6 37.1 428 76-508 170-602 (603)
6 PRK12317 elongation factor 1-a 100.0 2.2E-80 4.8E-85 651.8 49.1 419 79-511 2-424 (425)
7 TIGR00483 EF-1_alpha translati 100.0 1.9E-79 4.1E-84 644.6 49.9 421 79-510 3-425 (426)
8 COG2895 CysN GTPases - Sulfate 100.0 6E-77 1.3E-81 573.1 35.9 409 79-508 2-416 (431)
9 PRK05124 cysN sulfate adenylyl 100.0 1.2E-75 2.6E-80 618.7 47.6 410 79-508 23-438 (474)
10 TIGR02034 CysN sulfate adenyly 100.0 9.8E-76 2.1E-80 610.7 44.3 400 84-504 1-406 (406)
11 PRK05506 bifunctional sulfate 100.0 7.5E-72 1.6E-76 612.5 48.5 411 79-510 20-436 (632)
12 PLN03126 Elongation factor Tu; 100.0 4.9E-68 1.1E-72 558.1 44.4 389 79-508 77-477 (478)
13 CHL00071 tufA elongation facto 100.0 1E-66 2.2E-71 544.0 45.1 390 79-509 8-409 (409)
14 PRK12735 elongation factor Tu; 100.0 1.7E-66 3.6E-71 540.1 46.1 379 79-508 8-395 (396)
15 PRK00049 elongation factor Tu; 100.0 3E-66 6.5E-71 537.8 46.1 379 79-508 8-395 (396)
16 PRK12736 elongation factor Tu; 100.0 1.1E-65 2.5E-70 533.5 44.9 377 79-508 8-393 (394)
17 TIGR00485 EF-Tu translation el 100.0 5.7E-65 1.2E-69 529.0 45.0 377 79-508 8-393 (394)
18 PLN03127 Elongation factor Tu; 100.0 1.5E-64 3.2E-69 529.5 44.6 376 79-508 57-446 (447)
19 COG0050 TufB GTPases - transla 100.0 6.2E-61 1.3E-65 451.3 32.2 377 79-508 8-393 (394)
20 KOG0460 Mitochondrial translat 100.0 7.1E-62 1.5E-66 465.6 25.0 380 78-509 49-438 (449)
21 PTZ00327 eukaryotic translatio 100.0 1.8E-56 3.8E-61 467.3 39.6 346 79-506 30-451 (460)
22 PRK10512 selenocysteinyl-tRNA- 100.0 3.6E-54 7.7E-59 466.4 39.0 339 84-512 1-345 (614)
23 COG5258 GTPBP1 GTPase [General 100.0 4.4E-54 9.5E-59 417.6 30.9 360 80-507 114-526 (527)
24 PRK04000 translation initiatio 100.0 5.2E-52 1.1E-56 432.5 39.8 344 79-505 5-411 (411)
25 TIGR03680 eif2g_arch translati 100.0 5.6E-52 1.2E-56 432.6 39.6 341 81-504 2-405 (406)
26 TIGR00475 selB selenocysteine- 100.0 1.3E-50 2.9E-55 437.5 39.9 335 84-507 1-338 (581)
27 KOG0463 GTP-binding protein GP 100.0 1.4E-51 3E-56 398.6 21.9 380 82-513 132-552 (641)
28 COG3276 SelB Selenocysteine-sp 100.0 1E-48 2.2E-53 390.7 31.3 296 85-441 2-300 (447)
29 KOG1143 Predicted translation 100.0 1.4E-45 2.9E-50 356.8 24.1 377 81-509 165-584 (591)
30 KOG0052 Translation elongation 100.0 1.5E-47 3.3E-52 378.1 10.6 370 79-512 3-376 (391)
31 COG5257 GCD11 Translation init 100.0 6.8E-41 1.5E-45 319.6 32.7 343 81-506 8-413 (415)
32 TIGR01394 TypA_BipA GTP-bindin 100.0 2.5E-40 5.5E-45 356.8 29.1 279 83-396 1-289 (594)
33 cd01883 EF1_alpha Eukaryotic e 100.0 4.3E-39 9.2E-44 309.1 23.3 218 85-305 1-218 (219)
34 KOG0461 Selenocysteine-specifi 100.0 6.3E-39 1.4E-43 307.9 22.0 346 83-482 7-380 (522)
35 KOG0462 Elongation factor-type 100.0 1.1E-38 2.3E-43 323.2 20.7 267 80-395 57-332 (650)
36 COG1217 TypA Predicted membran 100.0 1.1E-37 2.3E-42 310.3 26.5 280 81-396 3-293 (603)
37 PRK10218 GTP-binding protein; 100.0 1.7E-37 3.8E-42 334.3 27.7 278 82-396 4-293 (607)
38 PRK05433 GTP-binding protein L 100.0 2.1E-37 4.6E-42 335.3 28.5 268 81-397 5-283 (600)
39 TIGR01393 lepA GTP-binding pro 100.0 3.2E-37 7E-42 333.6 29.2 267 82-397 2-279 (595)
40 COG0481 LepA Membrane GTPase L 100.0 4.8E-37 1E-41 306.5 23.8 267 79-395 5-283 (603)
41 cd04166 CysN_ATPS CysN_ATPS su 100.0 4E-37 8.6E-42 293.1 21.1 207 85-305 1-207 (208)
42 KOG1145 Mitochondrial translat 100.0 7E-36 1.5E-40 302.5 20.2 252 78-393 148-406 (683)
43 COG0532 InfB Translation initi 100.0 2.1E-35 4.5E-40 302.8 22.7 234 81-375 3-245 (509)
44 TIGR00487 IF-2 translation ini 100.0 9.1E-35 2E-39 312.9 27.2 250 79-392 83-339 (587)
45 PRK05306 infB translation init 100.0 9.8E-35 2.1E-39 319.2 26.8 250 79-393 286-542 (787)
46 cd01884 EF_Tu EF-Tu subfamily. 100.0 5E-35 1.1E-39 274.9 19.6 192 82-304 1-193 (195)
47 PRK07560 elongation factor EF- 100.0 4.2E-33 9.2E-38 310.1 26.4 289 79-395 16-375 (731)
48 PRK00007 elongation factor G; 100.0 2E-32 4.3E-37 303.1 28.3 281 80-395 7-394 (693)
49 COG0480 FusA Translation elong 100.0 3.1E-32 6.7E-37 295.1 27.3 277 80-395 7-392 (697)
50 CHL00189 infB translation init 100.0 1.9E-32 4.2E-37 298.5 25.1 251 80-394 241-501 (742)
51 PRK12739 elongation factor G; 100.0 6E-32 1.3E-36 299.4 27.8 272 80-395 5-391 (691)
52 PRK04004 translation initiatio 100.0 4.8E-32 1E-36 292.5 26.2 260 80-391 3-325 (586)
53 PRK00741 prfC peptide chain re 100.0 2.6E-31 5.7E-36 283.4 27.4 280 81-395 8-380 (526)
54 TIGR00491 aIF-2 translation in 100.0 1.7E-31 3.7E-36 287.0 25.6 259 81-391 2-323 (590)
55 PF00009 GTP_EFTU: Elongation 100.0 6.3E-32 1.4E-36 253.3 19.3 176 81-282 1-179 (188)
56 KOG1144 Translation initiation 100.0 1.4E-32 3E-37 285.3 15.0 247 79-375 471-793 (1064)
57 TIGR00484 EF-G translation elo 100.0 7.9E-31 1.7E-35 290.7 29.0 272 80-395 7-392 (689)
58 TIGR00503 prfC peptide chain r 100.0 2.3E-30 4.9E-35 276.3 27.9 281 80-395 8-381 (527)
59 PRK13351 elongation factor G; 100.0 5.8E-30 1.3E-34 284.4 28.5 272 81-395 6-390 (687)
60 TIGR00490 aEF-2 translation el 100.0 6.1E-30 1.3E-34 284.1 22.4 289 79-395 15-374 (720)
61 PRK12740 elongation factor G; 100.0 5.4E-29 1.2E-33 276.1 27.0 264 89-395 1-373 (668)
62 COG4108 PrfC Peptide chain rel 100.0 2.6E-29 5.7E-34 249.4 17.8 279 81-395 10-382 (528)
63 PLN00116 translation elongatio 100.0 1.1E-28 2.5E-33 277.7 25.1 155 78-255 14-190 (843)
64 KOG0466 Translation initiation 100.0 5.5E-30 1.2E-34 242.8 9.8 349 79-506 34-458 (466)
65 PTZ00416 elongation factor 2; 100.0 3.8E-28 8.3E-33 272.9 24.7 154 79-255 15-184 (836)
66 KOG0465 Mitochondrial elongati 100.0 5.4E-29 1.2E-33 255.3 15.4 275 80-395 36-421 (721)
67 PRK14845 translation initiatio 100.0 2.4E-27 5.1E-32 265.9 24.8 255 82-392 464-781 (1049)
68 cd01885 EF2 EF2 (for archaea a 100.0 2.3E-27 4.9E-32 226.7 16.9 172 84-278 1-200 (222)
69 cd04165 GTPBP1_like GTPBP1-lik 99.9 3.8E-26 8.3E-31 219.2 17.2 191 85-304 1-223 (224)
70 cd01886 EF-G Elongation factor 99.9 7.5E-26 1.6E-30 223.0 15.7 174 85-289 1-175 (270)
71 cd01889 SelB_euk SelB subfamil 99.9 7.1E-25 1.5E-29 206.2 17.4 163 84-281 1-177 (192)
72 cd01888 eIF2_gamma eIF2-gamma 99.9 5E-25 1.1E-29 209.1 16.1 157 84-281 1-190 (203)
73 KOG0469 Elongation factor 2 [T 99.9 2.4E-25 5.1E-30 223.2 13.9 305 76-405 12-484 (842)
74 cd04168 TetM_like Tet(M)-like 99.9 5E-24 1.1E-28 206.4 17.6 144 85-250 1-144 (237)
75 cd01891 TypA_BipA TypA (tyrosi 99.9 1.5E-23 3.3E-28 197.5 17.6 171 83-281 2-173 (194)
76 cd04167 Snu114p Snu114p subfam 99.9 2.6E-23 5.7E-28 198.8 18.1 165 84-270 1-176 (213)
77 KOG0467 Translation elongation 99.9 7.7E-23 1.7E-27 214.7 21.9 177 79-279 5-206 (887)
78 KOG0464 Elongation factor G [T 99.9 9.2E-25 2E-29 214.7 6.6 275 81-395 35-419 (753)
79 cd01890 LepA LepA subfamily. 99.9 5.9E-23 1.3E-27 190.3 16.9 164 84-282 1-169 (179)
80 cd04169 RF3 RF3 subfamily. Pe 99.9 1.6E-22 3.5E-27 199.1 17.3 138 83-237 2-139 (267)
81 cd04171 SelB SelB subfamily. 99.9 2.9E-22 6.3E-27 182.4 17.5 157 84-282 1-158 (164)
82 cd03704 eRF3c_III This family 99.9 9.3E-23 2E-27 173.4 12.5 107 400-507 2-108 (108)
83 cd04093 HBS1_C HBS1_C: this fa 99.9 7.7E-22 1.7E-26 167.5 14.2 106 400-507 2-107 (107)
84 KOG0468 U5 snRNP-specific prot 99.9 3.8E-21 8.3E-26 198.7 20.6 157 78-256 123-290 (971)
85 COG1160 Predicted GTPases [Gen 99.9 1.5E-21 3.3E-26 197.9 15.5 158 81-283 176-344 (444)
86 cd00881 GTP_translation_factor 99.9 8.7E-21 1.9E-25 176.8 17.8 170 85-281 1-178 (189)
87 cd03705 EF1_alpha_III Domain I 99.9 1.8E-21 4E-26 164.3 11.4 102 400-504 2-104 (104)
88 PF02421 FeoB_N: Ferrous iron 99.9 1.5E-21 3.3E-26 175.0 9.3 144 84-282 1-153 (156)
89 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 4.7E-20 1E-24 168.7 16.3 155 84-283 1-159 (168)
90 cd04170 EF-G_bact Elongation f 99.8 3.3E-20 7.2E-25 183.6 16.2 165 85-282 1-165 (268)
91 COG1160 Predicted GTPases [Gen 99.8 3E-20 6.6E-25 188.5 14.0 146 84-283 4-158 (444)
92 PF03143 GTP_EFTU_D3: Elongati 99.8 1.1E-19 2.3E-24 151.7 13.1 98 397-507 1-98 (99)
93 cd04095 CysN_NoDQ_III TCysN_No 99.8 6.3E-20 1.4E-24 154.6 11.7 100 400-504 2-103 (103)
94 COG1159 Era GTPase [General fu 99.8 1E-19 2.2E-24 175.4 12.9 155 80-283 3-165 (298)
95 TIGR03594 GTPase_EngA ribosome 99.8 2.1E-19 4.6E-24 189.9 15.4 157 81-283 170-337 (429)
96 PRK00093 GTP-binding protein D 99.8 3.8E-19 8.3E-24 188.3 16.4 157 81-284 171-338 (435)
97 cd01895 EngA2 EngA2 subfamily. 99.8 2.3E-18 5E-23 157.6 15.9 155 83-282 2-167 (174)
98 cd04160 Arfrp1 Arfrp1 subfamil 99.8 1.2E-18 2.6E-23 159.4 12.9 156 85-281 1-160 (167)
99 cd01513 Translation_factor_III 99.8 2.9E-18 6.3E-23 144.2 12.4 101 400-504 2-102 (102)
100 TIGR00436 era GTP-binding prot 99.8 5.9E-18 1.3E-22 167.7 16.1 148 85-283 2-157 (270)
101 TIGR03598 GTPase_YsxC ribosome 99.8 6.2E-18 1.3E-22 157.1 15.2 153 79-279 14-179 (179)
102 cd01894 EngA1 EngA1 subfamily. 99.8 3.7E-18 8E-23 153.9 12.8 143 87-283 1-151 (157)
103 TIGR03594 GTPase_EngA ribosome 99.8 1.1E-17 2.3E-22 176.9 15.7 145 85-283 1-153 (429)
104 PRK15494 era GTPase Era; Provi 99.8 1.8E-17 3.9E-22 169.0 16.1 152 81-283 50-209 (339)
105 PRK03003 GTP-binding protein D 99.7 1.4E-17 3.1E-22 177.5 14.8 155 82-283 210-375 (472)
106 cd01879 FeoB Ferrous iron tran 99.7 1.1E-17 2.4E-22 151.3 11.3 141 88-282 1-149 (158)
107 PRK03003 GTP-binding protein D 99.7 4.5E-17 9.8E-22 173.6 16.0 149 81-283 36-192 (472)
108 cd03693 EF1_alpha_II EF1_alpha 99.7 2.5E-17 5.4E-22 135.3 10.8 87 310-396 2-90 (91)
109 PRK09554 feoB ferrous iron tra 99.7 5.7E-17 1.2E-21 180.2 15.9 148 82-283 2-161 (772)
110 PRK00089 era GTPase Era; Revie 99.7 1.6E-16 3.5E-21 159.4 16.6 154 81-283 3-164 (292)
111 cd01898 Obg Obg subfamily. Th 99.7 6.8E-17 1.5E-21 148.1 12.5 148 85-282 2-163 (170)
112 cd04089 eRF3_II eRF3_II: domai 99.7 1.2E-16 2.6E-21 128.6 11.0 82 312-393 1-82 (82)
113 PRK09518 bifunctional cytidyla 99.7 1.2E-16 2.6E-21 178.1 15.2 155 82-283 449-614 (712)
114 cd01864 Rab19 Rab19 subfamily. 99.7 9.3E-17 2E-21 146.8 11.8 151 83-282 3-158 (165)
115 PRK00093 GTP-binding protein D 99.7 2.5E-16 5.4E-21 166.8 15.8 146 84-283 2-155 (435)
116 cd01897 NOG NOG1 is a nucleola 99.7 2.4E-16 5.2E-21 144.3 13.5 150 84-283 1-161 (168)
117 cd04124 RabL2 RabL2 subfamily. 99.7 2.7E-16 5.9E-21 143.4 13.7 149 84-283 1-151 (161)
118 cd04164 trmE TrmE (MnmE, ThdF, 99.7 2.7E-16 5.8E-21 141.6 13.4 139 84-282 2-149 (157)
119 TIGR00231 small_GTP small GTP- 99.7 1E-16 2.3E-21 143.5 10.6 153 84-282 2-156 (161)
120 cd04154 Arl2 Arl2 subfamily. 99.7 1.3E-16 2.9E-21 147.2 11.4 151 82-282 13-167 (173)
121 cd04157 Arl6 Arl6 subfamily. 99.7 1.8E-16 4E-21 143.9 12.1 150 85-282 1-156 (162)
122 PRK09518 bifunctional cytidyla 99.7 5.1E-16 1.1E-20 173.2 18.0 151 79-283 271-429 (712)
123 cd04145 M_R_Ras_like M-Ras/R-R 99.7 3.1E-16 6.7E-21 142.8 13.2 150 83-283 2-157 (164)
124 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 1.7E-16 3.8E-21 147.9 11.5 159 83-283 3-163 (183)
125 PRK15467 ethanolamine utilizat 99.7 1.8E-16 3.9E-21 144.2 11.2 134 85-283 3-140 (158)
126 PRK04213 GTP-binding protein; 99.7 4.8E-16 1E-20 147.1 14.5 156 82-283 8-185 (201)
127 cd03698 eRF3_II_like eRF3_II_l 99.7 3.1E-16 6.6E-21 126.6 10.9 82 312-393 1-83 (83)
128 cd01861 Rab6 Rab6 subfamily. 99.7 5.8E-16 1.3E-20 140.6 14.1 149 85-283 2-155 (161)
129 smart00175 RAB Rab subfamily o 99.7 4.5E-16 9.7E-21 141.6 13.2 149 84-283 1-155 (164)
130 cd04151 Arl1 Arl1 subfamily. 99.7 2.3E-16 5E-21 143.2 11.1 149 85-283 1-153 (158)
131 cd04138 H_N_K_Ras_like H-Ras/N 99.7 4.7E-16 1E-20 140.9 13.0 148 84-283 2-155 (162)
132 cd01860 Rab5_related Rab5-rela 99.7 8.6E-16 1.9E-20 139.8 14.7 152 84-283 2-156 (163)
133 cd04113 Rab4 Rab4 subfamily. 99.7 4.7E-16 1E-20 141.4 12.2 149 84-282 1-154 (161)
134 cd01862 Rab7 Rab7 subfamily. 99.7 1.5E-15 3.3E-20 139.3 15.5 146 84-283 1-160 (172)
135 cd01863 Rab18 Rab18 subfamily. 99.7 1.6E-15 3.5E-20 137.8 15.4 150 84-282 1-154 (161)
136 PRK00454 engB GTP-binding prot 99.7 1.3E-15 2.9E-20 143.2 15.1 153 80-282 21-186 (196)
137 cd04163 Era Era subfamily. Er 99.7 1.6E-15 3.4E-20 137.5 15.1 152 82-282 2-161 (168)
138 COG0370 FeoB Fe2+ transport sy 99.7 3.6E-16 7.8E-21 165.7 12.3 143 83-283 3-157 (653)
139 TIGR02528 EutP ethanolamine ut 99.7 3.6E-16 7.8E-21 139.2 10.3 132 85-282 2-137 (142)
140 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 5.9E-16 1.3E-20 143.1 11.7 150 83-282 15-168 (174)
141 COG0486 ThdF Predicted GTPase 99.7 5.5E-16 1.2E-20 158.0 12.3 147 81-283 215-369 (454)
142 cd01866 Rab2 Rab2 subfamily. 99.7 1.1E-15 2.3E-20 140.4 12.9 151 83-282 4-158 (168)
143 cd04106 Rab23_lke Rab23-like s 99.7 2E-15 4.4E-20 137.2 14.6 149 84-282 1-155 (162)
144 cd00154 Rab Rab family. Rab G 99.7 1.3E-15 2.8E-20 136.9 13.1 151 84-282 1-154 (159)
145 cd04149 Arf6 Arf6 subfamily. 99.7 6.3E-16 1.4E-20 142.2 11.2 151 82-282 8-162 (168)
146 cd01878 HflX HflX subfamily. 99.7 7.7E-16 1.7E-20 146.0 11.9 147 81-282 39-197 (204)
147 cd04158 ARD1 ARD1 subfamily. 99.6 8E-16 1.7E-20 141.5 11.2 150 85-283 1-154 (169)
148 smart00173 RAS Ras subfamily o 99.6 1E-15 2.2E-20 139.6 11.8 147 85-283 2-155 (164)
149 cd01867 Rab8_Rab10_Rab13_like 99.6 1.1E-15 2.4E-20 140.1 11.8 153 83-283 3-158 (167)
150 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 1.4E-15 3E-20 139.1 12.3 151 83-283 2-157 (166)
151 cd04114 Rab30 Rab30 subfamily. 99.6 1.7E-15 3.7E-20 138.8 12.9 153 81-283 5-162 (169)
152 PLN00223 ADP-ribosylation fact 99.6 3.2E-15 6.9E-20 139.2 14.6 153 81-283 15-171 (181)
153 cd04119 RJL RJL (RabJ-Like) su 99.6 2.6E-15 5.6E-20 136.9 13.7 149 84-283 1-160 (168)
154 cd04156 ARLTS1 ARLTS1 subfamil 99.6 1.4E-15 2.9E-20 138.1 11.7 150 85-283 1-155 (160)
155 cd03694 GTPBP_II Domain II of 99.6 1.2E-15 2.7E-20 124.0 10.1 81 313-393 1-87 (87)
156 PRK12298 obgE GTPase CgtA; Rev 99.6 1.1E-15 2.4E-20 157.9 12.4 157 81-283 157-326 (390)
157 cd01868 Rab11_like Rab11-like. 99.6 1.7E-15 3.8E-20 138.2 12.0 150 84-283 4-158 (165)
158 COG0218 Predicted GTPase [Gene 99.6 4.1E-15 8.9E-20 136.4 14.2 159 78-283 19-190 (200)
159 cd04150 Arf1_5_like Arf1-Arf5- 99.6 3.3E-15 7.1E-20 136.1 13.6 148 85-282 2-153 (159)
160 cd01865 Rab3 Rab3 subfamily. 99.6 2.1E-15 4.6E-20 137.9 12.3 152 84-283 2-156 (165)
161 cd04140 ARHI_like ARHI subfami 99.6 3.6E-15 7.7E-20 136.4 13.7 150 84-283 2-158 (165)
162 PRK05291 trmE tRNA modificatio 99.6 1.6E-15 3.4E-20 160.3 12.7 142 82-283 214-363 (449)
163 cd04116 Rab9 Rab9 subfamily. 99.6 6.2E-15 1.3E-19 135.3 15.1 151 82-282 4-163 (170)
164 cd04127 Rab27A Rab27a subfamil 99.6 6.1E-15 1.3E-19 136.7 14.9 151 82-283 3-170 (180)
165 COG2229 Predicted GTPase [Gene 99.6 4.9E-15 1.1E-19 132.8 13.5 161 80-281 7-169 (187)
166 cd04112 Rab26 Rab26 subfamily. 99.6 2.5E-15 5.4E-20 141.1 12.3 151 84-283 1-156 (191)
167 cd04175 Rap1 Rap1 subgroup. T 99.6 3E-15 6.5E-20 136.6 12.5 148 84-283 2-156 (164)
168 cd00879 Sar1 Sar1 subfamily. 99.6 2E-15 4.3E-20 141.4 11.5 154 81-283 17-184 (190)
169 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 4.9E-15 1.1E-19 140.3 14.2 151 84-283 1-161 (201)
170 TIGR03156 GTP_HflX GTP-binding 99.6 1.8E-15 4E-20 154.6 11.7 145 82-282 188-344 (351)
171 PRK12299 obgE GTPase CgtA; Rev 99.6 4.3E-15 9.3E-20 150.7 14.3 154 80-283 155-321 (335)
172 cd03697 EFTU_II EFTU_II: Elong 99.6 1.6E-15 3.4E-20 123.5 9.0 83 313-395 1-87 (87)
173 cd00878 Arf_Arl Arf (ADP-ribos 99.6 2E-15 4.4E-20 136.7 10.7 148 85-282 1-152 (158)
174 PF10662 PduV-EutP: Ethanolami 99.6 2.4E-15 5.1E-20 132.1 10.6 132 84-281 2-137 (143)
175 cd04122 Rab14 Rab14 subfamily. 99.6 2E-15 4.3E-20 138.2 10.6 151 84-282 3-156 (166)
176 cd01882 BMS1 Bms1. Bms1 is an 99.6 1.8E-14 3.8E-19 138.8 17.5 165 80-304 36-201 (225)
177 cd04142 RRP22 RRP22 subfamily. 99.6 7.9E-15 1.7E-19 138.5 14.8 151 84-283 1-167 (198)
178 PLN03118 Rab family protein; P 99.6 7.9E-15 1.7E-19 140.0 14.6 154 81-283 12-170 (211)
179 cd04147 Ras_dva Ras-dva subfam 99.6 7.5E-15 1.6E-19 138.7 14.3 150 85-283 1-156 (198)
180 smart00178 SAR Sar1p-like memb 99.6 7.2E-15 1.6E-19 137.2 14.0 154 81-282 15-177 (184)
181 cd04139 RalA_RalB RalA/RalB su 99.6 7.6E-15 1.7E-19 133.3 13.9 149 84-283 1-155 (164)
182 smart00177 ARF ARF-like small 99.6 4.5E-15 9.8E-20 137.4 12.5 152 82-283 12-167 (175)
183 cd04159 Arl10_like Arl10-like 99.6 9.2E-15 2E-19 131.5 14.0 148 86-282 2-153 (159)
184 TIGR02729 Obg_CgtA Obg family 99.6 5.3E-15 1.1E-19 149.9 13.6 156 80-283 154-322 (329)
185 cd04136 Rap_like Rap-like subf 99.6 6.3E-15 1.4E-19 134.0 12.8 149 84-283 2-156 (163)
186 TIGR00450 mnmE_trmE_thdF tRNA 99.6 6.7E-15 1.4E-19 154.7 14.7 145 81-283 201-353 (442)
187 cd04115 Rab33B_Rab33A Rab33B/R 99.6 1.2E-14 2.6E-19 133.7 14.5 149 83-281 2-160 (170)
188 cd04123 Rab21 Rab21 subfamily. 99.6 8.3E-15 1.8E-19 132.7 13.2 149 84-283 1-155 (162)
189 cd04144 Ras2 Ras2 subfamily. 99.6 5.8E-15 1.3E-19 138.5 12.5 148 85-283 1-156 (190)
190 cd04155 Arl3 Arl3 subfamily. 99.6 3.8E-15 8.2E-20 137.1 11.0 152 81-282 12-167 (173)
191 cd04118 Rab24 Rab24 subfamily. 99.6 7.1E-15 1.5E-19 138.0 13.0 155 84-283 1-159 (193)
192 cd01893 Miro1 Miro1 subfamily. 99.6 7.6E-15 1.7E-19 134.4 12.8 153 85-283 2-157 (166)
193 TIGR00437 feoB ferrous iron tr 99.6 3.9E-15 8.5E-20 161.9 12.6 140 90-283 1-148 (591)
194 cd04120 Rab12 Rab12 subfamily. 99.6 7.8E-15 1.7E-19 138.8 12.9 151 84-283 1-156 (202)
195 PRK12297 obgE GTPase CgtA; Rev 99.6 1.3E-14 2.7E-19 151.0 15.5 153 80-283 155-320 (424)
196 PRK12296 obgE GTPase CgtA; Rev 99.6 1.2E-14 2.7E-19 152.9 15.4 160 79-283 155-333 (500)
197 PTZ00369 Ras-like protein; Pro 99.6 1.3E-14 2.7E-19 136.1 13.9 153 82-283 4-160 (189)
198 cd04101 RabL4 RabL4 (Rab-like4 99.6 1.1E-14 2.4E-19 132.7 13.2 153 84-283 1-157 (164)
199 PTZ00133 ADP-ribosylation fact 99.6 9.9E-15 2.2E-19 136.0 13.0 153 81-283 15-171 (182)
200 cd04109 Rab28 Rab28 subfamily. 99.6 3.7E-14 8E-19 135.8 17.3 150 84-283 1-159 (215)
201 PRK11058 GTPase HflX; Provisio 99.6 4.7E-15 1E-19 155.0 11.9 150 83-283 197-355 (426)
202 cd04161 Arl2l1_Arl13_like Arl2 99.6 1.1E-14 2.4E-19 133.7 12.9 148 85-281 1-160 (167)
203 cd00880 Era_like Era (E. coli 99.6 9E-15 1.9E-19 131.0 12.0 148 88-282 1-156 (163)
204 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 1.1E-14 2.5E-19 133.2 12.8 147 86-282 2-158 (164)
205 PF00025 Arf: ADP-ribosylation 99.6 1.7E-14 3.8E-19 133.5 13.8 154 80-282 11-168 (175)
206 cd03696 selB_II selB_II: this 99.6 7.8E-15 1.7E-19 118.4 10.0 81 313-393 1-83 (83)
207 cd04126 Rab20 Rab20 subfamily. 99.6 5.1E-15 1.1E-19 141.8 10.4 158 84-283 1-183 (220)
208 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 1.9E-14 4.1E-19 132.6 13.8 152 85-283 2-158 (170)
209 cd00877 Ran Ran (Ras-related n 99.6 1.7E-14 3.8E-19 132.2 13.5 148 84-283 1-152 (166)
210 cd00157 Rho Rho (Ras homology) 99.6 5E-15 1.1E-19 135.7 9.6 156 84-282 1-165 (171)
211 cd04110 Rab35 Rab35 subfamily. 99.6 3.2E-14 7E-19 134.5 15.4 152 82-283 5-160 (199)
212 cd04176 Rap2 Rap2 subgroup. T 99.6 1.7E-14 3.6E-19 131.4 13.0 148 84-282 2-155 (163)
213 cd04135 Tc10 TC10 subfamily. 99.6 9E-15 1.9E-19 134.7 11.2 156 84-283 1-167 (174)
214 smart00174 RHO Rho (Ras homolo 99.6 8.4E-15 1.8E-19 134.9 10.9 152 86-283 1-165 (174)
215 cd04137 RheB Rheb (Ras Homolog 99.6 2.2E-14 4.7E-19 133.0 13.4 149 84-283 2-156 (180)
216 cd01881 Obg_like The Obg-like 99.6 9.6E-15 2.1E-19 134.4 10.9 151 88-283 1-170 (176)
217 cd04121 Rab40 Rab40 subfamily. 99.6 4.7E-14 1E-18 132.2 15.3 152 82-283 5-160 (189)
218 cd04132 Rho4_like Rho4-like su 99.6 2E-14 4.4E-19 134.2 12.8 154 84-283 1-160 (187)
219 cd00876 Ras Ras family. The R 99.6 2E-14 4.4E-19 129.9 12.3 147 85-282 1-153 (160)
220 cd04177 RSR1 RSR1 subgroup. R 99.6 1.2E-14 2.5E-19 133.4 10.5 152 84-283 2-157 (168)
221 cd04128 Spg1 Spg1p. Spg1p (se 99.6 6.3E-14 1.4E-18 130.6 15.5 154 84-283 1-159 (182)
222 cd01871 Rac1_like Rac1-like su 99.6 3.8E-14 8.3E-19 131.0 13.8 155 84-283 2-168 (174)
223 cd03695 CysN_NodQ_II CysN_NodQ 99.6 2.6E-14 5.6E-19 114.5 10.7 79 313-393 1-81 (81)
224 cd03706 mtEFTU_III Domain III 99.6 5.1E-14 1.1E-18 116.2 12.6 88 401-507 3-93 (93)
225 PLN03110 Rab GTPase; Provision 99.6 4.9E-14 1.1E-18 135.0 14.3 151 82-283 11-167 (216)
226 cd04125 RabA_like RabA-like su 99.6 2.8E-14 6E-19 133.5 12.3 151 84-283 1-155 (188)
227 cd01892 Miro2 Miro2 subfamily. 99.6 2.8E-14 6E-19 131.3 11.6 154 81-283 2-159 (169)
228 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 1.1E-13 2.3E-18 127.8 15.5 149 83-283 2-157 (172)
229 cd01876 YihA_EngB The YihA (En 99.6 6.8E-14 1.5E-18 127.1 14.1 149 86-282 2-163 (170)
230 cd04143 Rhes_like Rhes_like su 99.5 6.7E-14 1.4E-18 136.6 14.5 149 85-283 2-164 (247)
231 cd01874 Cdc42 Cdc42 subfamily. 99.5 6.1E-14 1.3E-18 129.8 13.4 152 84-283 2-168 (175)
232 KOG1423 Ras-like GTPase ERA [C 99.5 4.9E-14 1.1E-18 135.3 12.7 170 79-291 68-277 (379)
233 cd03708 GTPBP_III Domain III o 99.5 4.7E-14 1E-18 115.0 10.6 85 400-507 2-87 (87)
234 PLN03071 GTP-binding nuclear p 99.5 7.9E-14 1.7E-18 133.8 13.7 153 81-283 11-165 (219)
235 PLN03108 Rab family protein; P 99.5 4.1E-14 8.8E-19 135.0 11.3 153 83-283 6-161 (210)
236 cd04130 Wrch_1 Wrch-1 subfamil 99.5 2.3E-14 4.9E-19 132.2 8.9 154 84-283 1-167 (173)
237 cd04146 RERG_RasL11_like RERG/ 99.5 5.7E-14 1.2E-18 128.3 10.7 149 85-283 1-157 (165)
238 cd03707 EFTU_III Domain III of 99.5 1.2E-13 2.5E-18 113.3 11.4 85 401-504 3-90 (90)
239 cd04117 Rab15 Rab15 subfamily. 99.5 1.5E-13 3.2E-18 125.3 13.2 147 85-282 2-154 (161)
240 cd04134 Rho3 Rho3 subfamily. 99.5 1.3E-13 2.8E-18 129.2 13.0 157 84-283 1-167 (189)
241 cd04111 Rab39 Rab39 subfamily. 99.5 8.9E-14 1.9E-18 132.7 11.5 150 84-283 3-159 (211)
242 cd01870 RhoA_like RhoA-like su 99.5 9.3E-14 2E-18 128.0 10.8 158 84-283 2-168 (175)
243 PRK09866 hypothetical protein; 99.5 6.1E-13 1.3E-17 140.7 18.1 111 160-283 229-346 (741)
244 KOG1191 Mitochondrial GTPase [ 99.5 5.6E-14 1.2E-18 143.0 9.5 159 80-284 265-444 (531)
245 cd01875 RhoG RhoG subfamily. 99.5 3.7E-13 8E-18 126.4 14.4 156 83-283 3-170 (191)
246 cd01896 DRG The developmentall 99.5 3.4E-13 7.4E-18 130.5 13.7 82 85-197 2-90 (233)
247 PF01926 MMR_HSR1: 50S ribosom 99.5 1.6E-13 3.5E-18 117.9 10.2 107 85-230 1-116 (116)
248 cd04105 SR_beta Signal recogni 99.5 6.5E-13 1.4E-17 125.9 14.6 130 84-251 1-139 (203)
249 smart00176 RAN Ran (Ras-relate 99.5 3.6E-13 7.8E-18 127.2 12.6 145 89-283 1-147 (200)
250 cd00882 Ras_like_GTPase Ras-li 99.5 1.6E-13 3.5E-18 121.3 9.6 144 88-282 1-152 (157)
251 cd04148 RGK RGK subfamily. Th 99.5 3.7E-13 8.1E-18 129.3 12.4 151 84-283 1-156 (221)
252 cd04133 Rop_like Rop subfamily 99.5 6.6E-13 1.4E-17 123.0 12.7 158 84-283 2-166 (176)
253 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.5 1.1E-12 2.3E-17 122.3 13.8 157 81-283 3-173 (182)
254 cd04104 p47_IIGP_like p47 (47- 99.4 6.1E-13 1.3E-17 125.5 12.2 156 83-281 1-175 (197)
255 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 1E-12 2.2E-17 124.0 13.0 138 84-258 1-153 (196)
256 KOG0092 GTPase Rab5/YPT51 and 99.4 7.5E-13 1.6E-17 119.4 10.7 149 82-281 4-158 (200)
257 cd04131 Rnd Rnd subfamily. Th 99.4 2.1E-12 4.6E-17 119.8 13.6 154 84-283 2-169 (178)
258 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.4 4.1E-12 8.9E-17 122.5 15.2 157 82-283 12-181 (232)
259 cd04129 Rho2 Rho2 subfamily. 99.4 2.3E-12 5.1E-17 120.5 11.1 155 84-283 2-166 (187)
260 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.4 4.8E-12 1E-16 121.4 13.4 152 84-283 2-169 (222)
261 PTZ00132 GTP-binding nuclear p 99.4 8.9E-12 1.9E-16 119.2 14.5 153 80-282 6-160 (215)
262 PF00071 Ras: Ras family; Int 99.4 6.4E-12 1.4E-16 114.1 12.9 150 85-282 1-153 (162)
263 COG2262 HflX GTPases [General 99.4 2.3E-12 5E-17 129.5 10.3 149 80-283 189-349 (411)
264 KOG1489 Predicted GTP-binding 99.4 2.8E-12 6E-17 124.2 10.3 151 80-283 193-360 (366)
265 COG3596 Predicted GTPase [Gene 99.3 9.7E-12 2.1E-16 118.8 12.5 159 79-282 35-214 (296)
266 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.3 2.4E-11 5.2E-16 109.8 13.3 152 80-283 19-178 (221)
267 KOG0073 GTP-binding ADP-ribosy 99.3 2.7E-11 5.8E-16 106.3 13.0 152 81-281 14-169 (185)
268 PF09439 SRPRB: Signal recogni 99.3 5.8E-12 1.3E-16 115.7 9.3 114 83-237 3-128 (181)
269 KOG0078 GTP-binding protein SE 99.3 7.3E-12 1.6E-16 115.1 9.8 156 80-282 9-166 (207)
270 KOG0084 GTPase Rab1/YPT1, smal 99.3 1.3E-11 2.8E-16 111.9 10.7 155 81-282 7-164 (205)
271 COG1084 Predicted GTPase [Gene 99.3 1.8E-11 3.9E-16 119.6 12.0 153 81-281 166-327 (346)
272 cd01873 RhoBTB RhoBTB subfamil 99.3 1.8E-11 3.9E-16 115.3 11.2 109 160-283 65-189 (195)
273 cd04103 Centaurin_gamma Centau 99.3 2.1E-11 4.5E-16 110.9 11.1 146 84-283 1-152 (158)
274 COG1163 DRG Predicted GTPase [ 99.3 1.3E-11 2.8E-16 120.1 9.9 86 82-198 62-154 (365)
275 KOG0098 GTPase Rab2, small G p 99.3 1.5E-11 3.2E-16 110.2 8.3 151 83-283 6-161 (216)
276 KOG1532 GTPase XAB1, interacts 99.3 3.6E-11 7.7E-16 114.1 11.2 202 79-283 15-257 (366)
277 KOG0394 Ras-related GTPase [Ge 99.2 2.1E-11 4.6E-16 109.0 8.0 158 80-283 6-171 (210)
278 cd01850 CDC_Septin CDC/Septin. 99.2 1.5E-10 3.2E-15 114.8 15.0 143 83-259 4-177 (276)
279 PF08477 Miro: Miro-like prote 99.2 1.8E-11 3.9E-16 105.4 6.9 114 85-232 1-119 (119)
280 KOG0076 GTP-binding ADP-ribosy 99.2 2.2E-11 4.8E-16 107.9 6.8 164 80-281 14-178 (197)
281 KOG0070 GTP-binding ADP-ribosy 99.2 5.4E-11 1.2E-15 107.2 8.1 153 80-282 14-170 (181)
282 cd03688 eIF2_gamma_II eIF2_gam 99.2 2.8E-10 6.1E-15 94.3 11.6 87 309-395 2-113 (113)
283 cd04102 RabL3 RabL3 (Rab-like3 99.2 4.9E-10 1.1E-14 106.0 14.3 114 84-233 1-141 (202)
284 cd01853 Toc34_like Toc34-like 99.2 1.1E-09 2.3E-14 106.9 16.7 123 79-237 27-165 (249)
285 cd04094 selB_III This family r 99.2 3.5E-10 7.5E-15 94.0 11.5 95 388-504 1-97 (97)
286 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 4.3E-10 9.2E-15 107.9 13.1 153 85-274 1-161 (232)
287 PLN00023 GTP-binding protein; 99.2 4.6E-10 1E-14 111.8 13.7 146 79-260 17-190 (334)
288 PRK09435 membrane ATPase/prote 99.2 9.9E-11 2.2E-15 118.0 9.1 107 158-283 146-253 (332)
289 cd03692 mtIF2_IVc mtIF2_IVc: t 99.1 5.2E-10 1.1E-14 90.2 10.8 75 315-391 3-82 (84)
290 KOG0090 Signal recognition par 99.1 5.2E-10 1.1E-14 102.8 12.0 156 82-280 37-229 (238)
291 COG1100 GTPase SAR1 and relate 99.1 6.4E-10 1.4E-14 106.4 13.1 164 83-283 5-178 (219)
292 KOG0075 GTP-binding ADP-ribosy 99.1 3E-10 6.6E-15 97.8 9.2 149 83-281 20-173 (186)
293 KOG0095 GTPase Rab30, small G 99.1 2.6E-10 5.6E-15 98.3 8.7 152 82-282 6-161 (213)
294 KOG0087 GTPase Rab11/YPT3, sma 99.1 3.4E-10 7.3E-15 103.8 8.7 152 83-283 14-169 (222)
295 KOG0093 GTPase Rab3, small G p 99.1 2.3E-10 5E-15 98.5 6.5 156 84-284 22-177 (193)
296 KOG0080 GTPase Rab18, small G 99.1 6.2E-10 1.3E-14 97.3 9.0 150 81-281 9-165 (209)
297 COG5192 BMS1 GTP-binding prote 99.1 1.6E-09 3.6E-14 111.4 13.5 146 80-275 66-211 (1077)
298 KOG0086 GTPase Rab4, small G p 99.1 7.2E-10 1.6E-14 96.0 9.1 152 83-281 9-162 (214)
299 COG4917 EutP Ethanolamine util 99.1 5.2E-10 1.1E-14 94.0 7.5 133 84-282 2-138 (148)
300 COG0536 Obg Predicted GTPase [ 99.0 8.1E-10 1.8E-14 108.6 10.1 156 80-284 156-327 (369)
301 PRK13768 GTPase; Provisional 99.0 1.6E-09 3.6E-14 106.1 12.2 111 160-283 96-240 (253)
302 cd01899 Ygr210 Ygr210 subfamil 99.0 3.5E-09 7.5E-14 106.8 14.3 36 161-196 69-111 (318)
303 PF03029 ATP_bind_1: Conserved 99.0 6.6E-10 1.4E-14 107.6 8.6 114 162-282 92-229 (238)
304 PTZ00099 rab6; Provisional 99.0 9E-10 1.9E-14 102.0 8.7 105 160-283 28-135 (176)
305 TIGR00073 hypB hydrogenase acc 99.0 2.3E-09 5E-14 102.0 10.1 99 160-283 102-200 (207)
306 TIGR00750 lao LAO/AO transport 99.0 4.6E-09 9.9E-14 105.7 12.5 103 158-283 124-231 (300)
307 TIGR02836 spore_IV_A stage IV 98.9 9.6E-09 2.1E-13 104.1 13.2 135 79-233 13-192 (492)
308 PF05049 IIGP: Interferon-indu 98.9 5.6E-09 1.2E-13 106.2 9.7 151 80-274 32-200 (376)
309 TIGR00991 3a0901s02IAP34 GTP-b 98.9 2.5E-08 5.4E-13 98.9 13.9 118 81-234 36-166 (313)
310 KOG0088 GTPase Rab21, small G 98.9 4.1E-09 8.8E-14 91.9 7.1 157 82-283 12-168 (218)
311 KOG0079 GTP-binding protein H- 98.9 4.9E-09 1.1E-13 90.4 7.5 152 84-283 9-162 (198)
312 smart00053 DYNc Dynamin, GTPas 98.9 1.1E-08 2.3E-13 98.9 10.4 66 161-234 125-205 (240)
313 PRK09602 translation-associate 98.9 3.9E-08 8.4E-13 102.2 15.2 36 161-196 72-114 (396)
314 KOG0071 GTP-binding ADP-ribosy 98.9 1.9E-08 4.1E-13 86.2 10.1 149 82-280 16-168 (180)
315 KOG2486 Predicted GTPase [Gene 98.9 1E-08 2.2E-13 98.0 9.4 158 80-282 133-308 (320)
316 PF03144 GTP_EFTU_D2: Elongati 98.8 1.2E-08 2.6E-13 80.2 7.9 68 325-392 1-74 (74)
317 PF04548 AIG1: AIG1 family; I 98.8 5.8E-08 1.3E-12 92.7 14.0 139 84-259 1-155 (212)
318 PF00350 Dynamin_N: Dynamin fa 98.8 1.2E-08 2.6E-13 93.3 8.3 66 159-231 99-168 (168)
319 cd01342 Translation_Factor_II_ 98.8 5.3E-08 1.1E-12 77.1 10.2 78 313-392 1-82 (83)
320 KOG0097 GTPase Rab14, small G 98.8 8.3E-08 1.8E-12 82.1 11.5 146 83-281 11-164 (215)
321 KOG0395 Ras-related GTPase [Ge 98.8 2.5E-08 5.4E-13 93.8 8.7 155 82-283 2-158 (196)
322 KOG0072 GTP-binding ADP-ribosy 98.8 1.6E-08 3.4E-13 87.1 6.4 153 82-282 17-171 (182)
323 PF03308 ArgK: ArgK protein; 98.8 4.3E-08 9.3E-13 94.0 10.1 177 81-283 27-223 (266)
324 PRK10463 hydrogenase nickel in 98.7 1.8E-08 4E-13 99.2 7.1 160 79-282 100-281 (290)
325 KOG0074 GTP-binding ADP-ribosy 98.7 6.4E-08 1.4E-12 83.1 9.0 154 80-282 14-171 (185)
326 KOG3886 GTP-binding protein [S 98.7 3.4E-08 7.4E-13 91.8 7.9 153 83-274 4-163 (295)
327 KOG0091 GTPase Rab39, small G 98.7 7.9E-08 1.7E-12 84.5 8.4 147 84-283 9-166 (213)
328 PF14578 GTP_EFTU_D4: Elongati 98.7 2.6E-07 5.6E-12 72.7 10.4 75 311-391 3-79 (81)
329 TIGR00101 ureG urease accessor 98.7 1.1E-07 2.4E-12 89.8 9.9 99 160-283 91-189 (199)
330 COG1703 ArgK Putative periplas 98.7 1.8E-07 3.9E-12 90.9 11.0 104 159-284 142-248 (323)
331 KOG0077 Vesicle coat complex C 98.7 1.2E-07 2.7E-12 83.7 8.9 116 81-237 18-137 (193)
332 KOG0081 GTPase Rab27, small G 98.6 3.1E-08 6.8E-13 86.5 5.1 105 161-283 67-174 (219)
333 TIGR00993 3a0901s04IAP86 chlor 98.6 3.7E-07 8E-12 97.8 13.7 118 82-235 117-250 (763)
334 PTZ00258 GTP-binding protein; 98.6 1.2E-07 2.6E-12 97.7 9.0 84 81-195 19-126 (390)
335 KOG0410 Predicted GTP binding 98.6 1.4E-07 3E-12 92.1 8.7 144 80-282 175-333 (410)
336 cd01900 YchF YchF subfamily. 98.6 8.6E-08 1.9E-12 94.5 7.5 80 86-196 1-104 (274)
337 PRK09601 GTP-binding protein Y 98.6 1.7E-07 3.7E-12 95.4 8.7 82 84-196 3-108 (364)
338 PF00735 Septin: Septin; Inte 98.6 8.6E-07 1.9E-11 88.0 13.3 142 83-260 4-177 (281)
339 COG0378 HypB Ni2+-binding GTPa 98.5 1.5E-07 3.3E-12 86.1 5.4 94 161-281 97-192 (202)
340 cd03690 Tet_II Tet_II: This su 98.5 9.1E-07 2E-11 71.5 8.8 78 310-392 1-84 (85)
341 cd04092 mtEFG2_II_like mtEFG2_ 98.5 1.1E-06 2.4E-11 70.6 9.1 75 315-393 3-83 (83)
342 cd04088 EFG_mtEFG_II EFG_mtEFG 98.4 1.5E-06 3.2E-11 69.9 9.2 75 315-393 3-83 (83)
343 cd03699 lepA_II lepA_II: This 98.4 3E-06 6.6E-11 68.6 10.4 80 313-393 1-86 (86)
344 KOG0083 GTPase Rab26/Rab37, sm 98.4 9.6E-08 2.1E-12 81.0 1.2 104 159-281 45-151 (192)
345 cd03691 BipA_TypA_II BipA_TypA 98.4 3.6E-06 7.9E-11 68.1 10.1 76 313-392 1-85 (86)
346 PRK14974 cell division protein 98.3 8.2E-06 1.8E-10 82.8 14.3 94 159-281 221-321 (336)
347 KOG0448 Mitofusin 1 GTPase, in 98.3 5.1E-06 1.1E-10 88.5 13.1 65 162-234 207-274 (749)
348 KOG1486 GTP-binding protein DR 98.3 2.6E-06 5.7E-11 80.4 9.3 87 81-198 60-153 (364)
349 cd04091 mtEFG1_II_like mtEFG1_ 98.3 4.9E-06 1.1E-10 66.6 9.6 74 315-393 3-81 (81)
350 KOG1490 GTP-binding protein CR 98.3 1.4E-06 3E-11 89.6 7.9 156 81-280 166-331 (620)
351 cd01858 NGP_1 NGP-1. Autoanti 98.3 8.7E-07 1.9E-11 80.3 5.6 57 82-171 101-157 (157)
352 KOG4252 GTP-binding protein [S 98.3 1.4E-07 3.1E-12 84.1 -0.1 154 81-282 18-173 (246)
353 PRK10416 signal recognition pa 98.3 7.6E-06 1.6E-10 82.7 12.3 94 159-281 195-301 (318)
354 cd03689 RF3_II RF3_II: this su 98.3 6.9E-06 1.5E-10 66.3 9.3 67 323-393 14-84 (85)
355 cd01851 GBP Guanylate-binding 98.3 1.2E-05 2.5E-10 77.4 12.5 120 80-233 4-146 (224)
356 KOG1673 Ras GTPases [General f 98.3 5.8E-06 1.3E-10 72.3 9.1 160 80-283 17-179 (205)
357 KOG1707 Predicted Ras related/ 98.2 3.3E-06 7.1E-11 88.5 8.9 158 79-282 5-167 (625)
358 TIGR00064 ftsY signal recognit 98.2 1.7E-05 3.7E-10 78.5 13.6 94 159-281 153-259 (272)
359 cd04178 Nucleostemin_like Nucl 98.2 1.5E-06 3.3E-11 80.0 5.4 58 81-171 115-172 (172)
360 cd01859 MJ1464 MJ1464. This f 98.2 6E-06 1.3E-10 74.7 8.7 80 182-283 10-89 (156)
361 COG5019 CDC3 Septin family pro 98.2 2.8E-05 6.1E-10 77.9 13.5 144 81-259 21-196 (373)
362 TIGR01425 SRP54_euk signal rec 98.1 1.5E-05 3.2E-10 83.1 11.4 64 159-233 181-251 (429)
363 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 1.2E-05 2.6E-10 71.4 9.3 80 176-277 3-84 (141)
364 cd01849 YlqF_related_GTPase Yl 98.1 3.4E-06 7.4E-11 76.3 5.3 58 81-171 98-155 (155)
365 cd01856 YlqF YlqF. Proteins o 98.1 1E-05 2.2E-10 74.5 8.0 92 168-283 2-94 (171)
366 cd01858 NGP_1 NGP-1. Autoanti 98.1 1.2E-05 2.6E-10 72.8 8.3 84 179-283 3-88 (157)
367 KOG3883 Ras family small GTPas 98.1 0.00012 2.7E-09 64.0 13.9 111 82-234 8-131 (198)
368 KOG1547 Septin CDC10 and relat 98.0 0.00011 2.3E-09 69.2 13.4 142 83-260 46-219 (336)
369 KOG0393 Ras-related small GTPa 98.0 1.6E-05 3.4E-10 73.8 7.7 155 82-283 3-172 (198)
370 cd01855 YqeH YqeH. YqeH is an 98.0 1.8E-05 3.9E-10 74.0 8.0 98 171-283 21-118 (190)
371 PF00448 SRP54: SRP54-type pro 98.0 1.7E-05 3.8E-10 74.6 7.6 66 159-234 82-153 (196)
372 TIGR03596 GTPase_YlqF ribosome 97.9 2.5E-05 5.4E-10 77.7 8.2 91 169-283 5-96 (276)
373 cd01855 YqeH YqeH. YqeH is an 97.9 1E-05 2.2E-10 75.7 5.1 64 83-171 127-190 (190)
374 KOG1487 GTP-binding protein DR 97.9 1.4E-05 3E-10 75.9 5.9 85 83-198 59-150 (358)
375 cd03700 eEF2_snRNP_like_II EF2 97.9 7.4E-05 1.6E-09 61.4 9.3 66 323-392 14-92 (93)
376 PRK11889 flhF flagellar biosyn 97.9 6.3E-05 1.4E-09 77.0 10.5 65 160-234 320-390 (436)
377 cd03115 SRP The signal recogni 97.9 0.0001 2.3E-09 67.7 10.9 65 159-234 81-152 (173)
378 PF03193 DUF258: Protein of un 97.9 6.5E-06 1.4E-10 74.3 2.6 23 84-106 36-58 (161)
379 PRK09563 rbgA GTPase YlqF; Rev 97.9 2.1E-05 4.5E-10 78.7 6.3 58 81-171 119-176 (287)
380 cd03702 IF2_mtIF2_II This fami 97.9 7.8E-05 1.7E-09 61.3 8.4 74 314-392 2-78 (95)
381 cd01849 YlqF_related_GTPase Yl 97.9 4.5E-05 9.7E-10 68.9 7.7 77 186-283 1-78 (155)
382 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 1.5E-05 3.3E-10 70.8 4.5 21 85-105 85-105 (141)
383 TIGR00157 ribosome small subun 97.9 2E-05 4.4E-10 76.8 5.8 84 181-283 33-116 (245)
384 COG1161 Predicted GTPases [Gen 97.9 1.5E-05 3.3E-10 80.8 5.0 58 81-171 130-187 (322)
385 PRK12288 GTPase RsgA; Reviewed 97.9 1.3E-05 2.8E-10 82.0 4.5 22 85-106 207-228 (347)
386 PRK14722 flhF flagellar biosyn 97.8 9.9E-05 2.2E-09 75.8 10.6 67 158-234 213-294 (374)
387 TIGR03596 GTPase_YlqF ribosome 97.8 2.2E-05 4.7E-10 78.1 5.6 58 81-171 116-173 (276)
388 PRK12289 GTPase RsgA; Reviewed 97.8 4.4E-05 9.4E-10 78.2 7.8 82 182-283 87-168 (352)
389 cd01856 YlqF YlqF. Proteins o 97.8 2.6E-05 5.7E-10 71.7 5.6 57 82-171 114-170 (171)
390 KOG0096 GTPase Ran/TC4/GSP1 (n 97.8 7.2E-05 1.6E-09 67.9 8.1 149 81-282 8-161 (216)
391 cd03114 ArgK-like The function 97.8 0.00011 2.4E-09 65.9 9.4 59 159-232 90-148 (148)
392 PRK00098 GTPase RsgA; Reviewed 97.8 4E-05 8.6E-10 77.1 7.0 82 182-282 78-159 (298)
393 TIGR00157 ribosome small subun 97.8 2.1E-05 4.5E-10 76.8 4.6 64 84-174 121-184 (245)
394 PRK00771 signal recognition pa 97.8 0.00012 2.6E-09 77.0 10.2 63 160-233 175-244 (437)
395 PRK09563 rbgA GTPase YlqF; Rev 97.7 7.5E-05 1.6E-09 74.7 7.8 92 168-283 7-99 (287)
396 KOG2655 Septin family protein 97.7 0.0003 6.5E-09 71.1 11.9 143 82-259 20-192 (366)
397 KOG1954 Endocytosis/signaling 97.7 0.00027 5.8E-09 70.6 10.9 133 82-233 57-223 (532)
398 PRK12289 GTPase RsgA; Reviewed 97.7 3.4E-05 7.5E-10 78.9 4.8 22 85-106 174-195 (352)
399 cd04090 eEF2_II_snRNP Loc2 eEF 97.7 0.00035 7.6E-09 57.5 9.6 66 315-382 3-84 (94)
400 COG1419 FlhF Flagellar GTP-bin 97.7 0.00022 4.7E-09 73.0 10.0 132 81-234 201-351 (407)
401 COG3640 CooC CO dehydrogenase 97.7 0.00016 3.4E-09 68.4 8.2 65 159-233 132-197 (255)
402 cd03701 IF2_IF5B_II IF2_IF5B_I 97.7 0.0003 6.5E-09 58.0 8.9 60 314-375 2-64 (95)
403 cd03112 CobW_like The function 97.7 0.00015 3.2E-09 65.9 7.8 22 85-106 2-23 (158)
404 cd03703 aeIF5B_II aeIF5B_II: T 97.7 0.00032 7E-09 58.8 9.1 77 314-392 2-93 (110)
405 KOG3905 Dynein light intermedi 97.7 0.00045 9.8E-09 67.8 11.3 56 218-280 220-280 (473)
406 PRK12723 flagellar biosynthesi 97.6 0.0003 6.5E-09 72.9 10.7 66 159-234 253-325 (388)
407 PRK14721 flhF flagellar biosyn 97.6 0.00024 5.2E-09 74.2 9.9 66 158-234 267-339 (420)
408 COG1162 Predicted GTPases [Gen 97.6 5.7E-05 1.2E-09 74.5 4.5 66 83-174 164-229 (301)
409 TIGR00092 GTP-binding protein 97.6 0.00016 3.5E-09 73.9 7.7 36 161-196 67-109 (368)
410 PRK12724 flagellar biosynthesi 97.6 0.00055 1.2E-08 71.0 11.5 66 159-234 298-372 (432)
411 KOG2485 Conserved ATP/GTP bind 97.6 9.5E-05 2E-09 72.5 5.5 66 80-170 140-205 (335)
412 TIGR00487 IF-2 translation ini 97.6 0.00063 1.4E-08 74.5 12.6 179 166-393 392-576 (587)
413 COG0012 Predicted GTPase, prob 97.6 0.00015 3.3E-09 73.1 7.2 90 83-196 2-109 (372)
414 PRK10867 signal recognition pa 97.6 0.00039 8.5E-09 73.0 10.3 64 159-233 182-252 (433)
415 PRK13796 GTPase YqeH; Provisio 97.5 9.1E-05 2E-09 76.6 5.1 62 83-172 160-221 (365)
416 TIGR03597 GTPase_YqeH ribosome 97.5 0.00011 2.3E-09 75.9 5.5 89 84-200 155-253 (360)
417 CHL00189 infB translation init 97.5 0.0012 2.6E-08 73.6 14.0 180 165-393 548-732 (742)
418 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00018 3.9E-09 71.9 6.9 80 182-281 76-155 (287)
419 PRK12726 flagellar biosynthesi 97.5 0.00023 5E-09 72.7 7.6 66 159-234 284-355 (407)
420 KOG3887 Predicted small GTPase 97.5 0.00014 2.9E-09 68.6 5.3 154 84-274 28-187 (347)
421 PRK05306 infB translation init 97.5 0.0019 4.2E-08 72.6 15.5 178 166-392 594-777 (787)
422 TIGR00959 ffh signal recogniti 97.5 0.0006 1.3E-08 71.6 10.7 64 159-233 181-251 (428)
423 COG0552 FtsY Signal recognitio 97.5 0.0014 3.1E-08 65.3 12.6 28 80-107 136-163 (340)
424 PRK12727 flagellar biosynthesi 97.5 0.00053 1.2E-08 72.9 10.3 64 159-233 427-496 (559)
425 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.0001 2.2E-09 73.7 4.7 23 84-106 162-184 (287)
426 PRK05703 flhF flagellar biosyn 97.5 0.00059 1.3E-08 71.8 10.0 65 159-233 298-369 (424)
427 cd01859 MJ1464 MJ1464. This f 97.4 0.00018 3.8E-09 65.0 5.2 23 82-104 100-122 (156)
428 cd03111 CpaE_like This protein 97.4 0.0011 2.3E-08 55.9 9.0 60 162-230 44-106 (106)
429 cd02036 MinD Bacterial cell di 97.4 0.0018 3.9E-08 59.4 11.3 63 162-233 64-126 (179)
430 PRK01889 GTPase RsgA; Reviewed 97.4 0.00041 8.8E-09 71.5 7.5 79 182-281 110-188 (356)
431 PF05783 DLIC: Dynein light in 97.4 0.00077 1.7E-08 71.5 9.6 56 219-281 195-255 (472)
432 PRK06731 flhF flagellar biosyn 97.4 0.00097 2.1E-08 65.8 9.7 65 160-234 154-224 (270)
433 TIGR03597 GTPase_YqeH ribosome 97.4 0.00042 9.1E-09 71.6 7.4 97 171-283 50-146 (360)
434 PRK12288 GTPase RsgA; Reviewed 97.3 0.00067 1.4E-08 69.5 8.4 83 182-282 118-200 (347)
435 cd02038 FleN-like FleN is a me 97.3 0.0027 5.9E-08 56.2 11.2 64 161-233 45-109 (139)
436 COG0541 Ffh Signal recognition 97.3 0.0016 3.5E-08 66.9 10.9 134 80-233 97-251 (451)
437 COG0532 InfB Translation initi 97.3 0.0075 1.6E-07 63.6 15.9 179 166-392 313-496 (509)
438 KOG0780 Signal recognition par 97.3 0.0017 3.7E-08 65.5 10.4 68 156-233 179-252 (483)
439 PRK00098 GTPase RsgA; Reviewed 97.3 0.00021 4.5E-09 71.9 4.1 24 83-106 164-187 (298)
440 PF02492 cobW: CobW/HypB/UreG, 97.3 0.00085 1.8E-08 62.1 7.4 65 160-233 84-153 (178)
441 KOG4181 Uncharacterized conser 97.2 0.0035 7.6E-08 62.2 11.4 143 80-255 185-374 (491)
442 KOG1534 Putative transcription 97.2 0.00081 1.8E-08 62.4 6.3 65 161-234 98-177 (273)
443 KOG1491 Predicted GTP-binding 97.1 0.00096 2.1E-08 66.2 6.7 85 81-196 18-126 (391)
444 PRK13796 GTPase YqeH; Provisio 97.1 0.0013 2.8E-08 68.1 7.8 94 173-283 58-152 (365)
445 PRK11537 putative GTP-binding 97.1 0.006 1.3E-07 61.8 12.4 25 82-106 3-27 (318)
446 PRK14723 flhF flagellar biosyn 97.1 0.0032 6.9E-08 70.1 11.0 23 83-105 185-207 (767)
447 PRK06995 flhF flagellar biosyn 97.1 0.00024 5.2E-09 75.3 1.9 66 158-233 332-403 (484)
448 KOG0447 Dynamin-like GTP bindi 97.0 0.0092 2E-07 62.5 12.9 110 144-259 392-518 (980)
449 COG1162 Predicted GTPases [Gen 97.0 0.0025 5.5E-08 63.0 8.3 82 183-282 78-159 (301)
450 cd03110 Fer4_NifH_child This p 97.0 0.0037 7.9E-08 57.7 8.8 65 159-233 91-155 (179)
451 smart00275 G_alpha G protein a 96.9 0.0041 8.9E-08 63.7 8.7 87 144-233 167-263 (342)
452 cd00066 G-alpha G protein alph 96.8 0.0027 5.9E-08 64.4 7.3 86 145-233 145-240 (317)
453 KOG0459 Polypeptide release fa 96.8 0.00083 1.8E-08 67.9 3.3 199 80-279 80-278 (501)
454 TIGR00491 aIF-2 translation in 96.8 0.025 5.3E-07 62.1 14.7 75 319-393 473-549 (590)
455 KOG2484 GTPase [General functi 96.8 0.00092 2E-08 67.6 3.3 59 80-171 249-307 (435)
456 cd02042 ParA ParA and ParB of 96.8 0.0088 1.9E-07 49.8 8.7 35 161-197 40-74 (104)
457 cd01983 Fer4_NifH The Fer4_Nif 96.8 0.012 2.7E-07 47.5 9.3 70 86-198 2-72 (99)
458 PRK08099 bifunctional DNA-bind 96.7 0.0086 1.9E-07 62.6 9.9 31 80-110 216-246 (399)
459 KOG4423 GTP-binding protein-li 96.6 0.00019 4.1E-09 65.0 -2.9 155 84-283 26-187 (229)
460 KOG1424 Predicted GTP-binding 96.5 0.0024 5.2E-08 66.6 3.9 26 80-105 311-336 (562)
461 TIGR02475 CobW cobalamin biosy 96.5 0.018 3.9E-07 59.0 10.3 25 82-106 3-27 (341)
462 KOG1533 Predicted GTPase [Gene 96.5 0.0088 1.9E-07 56.6 7.2 75 159-234 95-176 (290)
463 COG0523 Putative GTPases (G3E 96.5 0.014 3.1E-07 59.0 9.3 92 161-272 85-184 (323)
464 PF06858 NOG1: Nucleolar GTP-b 96.4 0.0097 2.1E-07 43.6 5.4 51 178-232 6-58 (58)
465 PRK13695 putative NTPase; Prov 96.3 0.0072 1.6E-07 55.6 5.7 56 167-232 78-137 (174)
466 PRK10751 molybdopterin-guanine 96.3 0.013 2.9E-07 53.7 7.2 26 81-106 4-29 (173)
467 PF09547 Spore_IV_A: Stage IV 96.1 0.1 2.2E-06 54.0 13.1 30 79-108 13-42 (492)
468 PRK04004 translation initiatio 96.1 0.12 2.5E-06 57.0 14.7 75 319-393 475-551 (586)
469 KOG1707 Predicted Ras related/ 96.1 0.018 3.9E-07 61.2 7.7 146 78-273 420-567 (625)
470 COG1618 Predicted nucleotide k 96.0 0.045 9.7E-07 49.1 9.0 24 81-104 3-26 (179)
471 KOG2423 Nucleolar GTPase [Gene 96.0 0.0026 5.7E-08 64.1 1.4 27 80-106 304-330 (572)
472 TIGR03348 VI_IcmF type VI secr 96.0 0.013 2.8E-07 69.7 7.3 22 82-103 110-131 (1169)
473 KOG2743 Cobalamin synthesis pr 96.0 0.063 1.4E-06 52.7 10.5 27 79-105 53-79 (391)
474 cd04178 Nucleostemin_like Nucl 96.0 0.019 4E-07 52.9 6.6 40 186-233 1-42 (172)
475 KOG1144 Translation initiation 95.9 0.11 2.5E-06 56.6 12.9 60 320-379 945-1007(1064)
476 COG1341 Predicted GTPase or GT 95.8 0.025 5.4E-07 58.0 7.3 29 80-108 70-98 (398)
477 PRK01889 GTPase RsgA; Reviewed 95.8 0.008 1.7E-07 62.0 3.7 23 84-106 196-218 (356)
478 KOG3859 Septins (P-loop GTPase 95.8 0.047 1E-06 52.9 8.5 138 80-260 39-211 (406)
479 PRK14845 translation initiatio 95.7 0.19 4.1E-06 58.5 14.6 75 319-393 931-1007(1049)
480 PHA00729 NTP-binding motif con 95.7 0.012 2.7E-07 56.1 4.3 26 82-107 16-41 (226)
481 cd02037 MRP-like MRP (Multiple 95.4 0.044 9.6E-07 50.0 6.8 66 159-233 66-133 (169)
482 PF13555 AAA_29: P-loop contai 95.4 0.017 3.6E-07 43.4 3.2 22 85-106 25-46 (62)
483 cd03116 MobB Molybdenum is an 95.3 0.045 9.7E-07 49.6 6.5 22 84-105 2-23 (159)
484 PF13207 AAA_17: AAA domain; P 95.2 0.02 4.3E-07 48.9 3.7 24 85-108 1-24 (121)
485 KOG0082 G-protein alpha subuni 95.1 0.068 1.5E-06 54.3 7.6 88 144-233 178-274 (354)
486 KOG0781 Signal recognition par 95.1 0.049 1.1E-06 56.6 6.6 143 79-233 374-542 (587)
487 PRK13505 formate--tetrahydrofo 94.8 0.034 7.3E-07 59.3 4.8 77 170-259 307-402 (557)
488 PF09173 eIF2_C: Initiation fa 94.7 0.46 9.9E-06 38.3 9.9 75 402-504 2-88 (88)
489 PF00503 G-alpha: G-protein al 94.7 0.063 1.4E-06 56.1 6.6 87 144-233 218-315 (389)
490 PRK13833 conjugal transfer pro 94.7 0.082 1.8E-06 53.6 7.0 24 83-106 144-167 (323)
491 PF03205 MobB: Molybdopterin g 94.7 0.032 7E-07 49.5 3.6 23 84-106 1-23 (140)
492 cd02019 NK Nucleoside/nucleoti 94.6 0.026 5.6E-07 43.4 2.5 20 85-104 1-20 (69)
493 PF00437 T2SE: Type II/IV secr 94.6 0.068 1.5E-06 52.8 6.2 25 82-106 126-150 (270)
494 cd03238 ABC_UvrA The excision 94.6 0.028 6.2E-07 51.9 3.2 27 82-108 20-46 (176)
495 KOG2484 GTPase [General functi 94.6 0.16 3.5E-06 51.9 8.6 63 165-234 126-190 (435)
496 COG1116 TauB ABC-type nitrate/ 94.5 0.026 5.6E-07 54.3 2.7 21 84-104 30-50 (248)
497 PF13671 AAA_33: AAA domain; P 94.4 0.039 8.5E-07 48.5 3.6 24 85-108 1-24 (143)
498 COG3523 IcmF Type VI protein s 94.4 0.059 1.3E-06 62.8 5.8 19 83-101 125-143 (1188)
499 TIGR00235 udk uridine kinase. 94.3 0.047 1E-06 51.7 4.0 29 80-108 3-31 (207)
500 PRK07261 topology modulation p 94.3 0.041 9E-07 50.5 3.4 22 85-106 2-23 (171)
No 1
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-99 Score=747.32 Aligned_cols=424 Identities=45% Similarity=0.797 Sum_probs=410.2
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
..++++|++++||||||||||+|+|||++|.++.+.|+++++++.+.|+.||+++|+||++++||+||+|++.+...|++
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
+.+.|+|+|||||++|+++|+.|+++||+|||||||..|.||+||..++||+||+.+++.+|+.++||+|||||. .+|
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~--v~w 160 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDL--VSW 160 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccc--ccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 789
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEEEE
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 318 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~i~ 318 (514)
++++|+++++++..+++.+||+++ +++|||+||++|+|+.+..+ .+|||+||||+++|+.+..|.+..++|||++|.
T Consensus 161 de~rf~ei~~~v~~l~k~~G~~~~-~v~FIPiSg~~G~Nl~~~s~--~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~ 237 (428)
T COG5256 161 DEERFEEIVSEVSKLLKMVGYNPK-DVPFIPISGFKGDNLTKKSE--NMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQ 237 (428)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcc-CCeEEecccccCCcccccCc--CCcCccCChHHHHHhccCCCCCCCCCCeEeEee
Confidence 999999999999999999999854 79999999999999999773 699999999999999999999999999999999
Q ss_pred EEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEccCCC
Q 010278 319 DKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 396 (514)
Q Consensus 319 ~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~ 396 (514)
++| .+.|++..|||++|.|++||+|+++|.+...+|+||+++|++++.|.|||+|+++++++...+|++||+++++++
T Consensus 238 ~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n 317 (428)
T COG5256 238 DVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSDN 317 (428)
T ss_pred eEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCCC
Confidence 999 689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcceE
Q 010278 397 PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSI 476 (514)
Q Consensus 397 ~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~pi 476 (514)
++..+..|.|++.+|+. +..|.+||+|++|+|+..++|++.+|++++|+.||+..+++|.++++|+.+.|.+++.+|+
T Consensus 318 ~~t~s~~f~a~i~vl~~--p~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~~t~k~~~~~p~f~k~g~~~iv~i~~~kP~ 395 (428)
T COG5256 318 PPTVSPEFTAQIIVLWH--PGIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAAIVKIEPEKPL 395 (428)
T ss_pred CcccccceEEEEEEEec--CccccCCCccEEEecccceeeeHHHHHHhhCcccccccccChhhhhcCceEEEEEEecCce
Confidence 99999999999999542 3789999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecccccccceEEEEeCCeEEEEEEEEecCC
Q 010278 477 CTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 509 (514)
Q Consensus 477 ~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~~ 509 (514)
|++++++++.||||+|||.|+|||+|+|.++.+
T Consensus 396 ~~e~~~~~~~Lgrfalrd~g~tIA~G~v~~v~~ 428 (428)
T COG5256 396 CLEKVSEIPQLGRFALRDMGQTIAAGKVLEVKK 428 (428)
T ss_pred EeeecccCCccceEEEEeCCCeEEeEEEEeccC
Confidence 999999999999999999999999999998753
No 2
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=6.5e-87 Score=698.88 Aligned_cols=429 Identities=36% Similarity=0.655 Sum_probs=405.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
.+++++||+++||+|||||||+++|++.+|.++.+.++++++++...|+.++.|+|++|..++|+++|+|++.+...|++
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 36789999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
.++.++|+|||||++|+++|+++++.+|++||||||..|.|++++...+||++|+.++..+|+|++|||+||||+...+|
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~ 162 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKY 162 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhh
Confidence 99999999999999999999999999999999999999999999988899999999999999998999999999855579
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEEEE
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 318 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~i~ 318 (514)
++.+|+++.++++.++++.||+. .+++|+|+||++|+|+.+.... ++||+|++|++.|+.++.|.+..+.||||+|+
T Consensus 163 ~~~~~~~i~~ei~~~l~~~g~~~-~~~~~ipiSa~~G~ni~~~~~~--~~Wy~g~tLl~~l~~i~~p~~~~~~plr~~I~ 239 (447)
T PLN00043 163 SKARYDEIVKEVSSYLKKVGYNP-DKIPFVPISGFEGDNMIERSTN--LDWYKGPTLLEALDQINEPKRPSDKPLRLPLQ 239 (447)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCc-ccceEEEEeccccccccccccC--CcccchHHHHHHHhhcCCCccccCCCcEEEEE
Confidence 99999999999999999999863 3589999999999999887653 89999999999999998888888999999999
Q ss_pred EEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEccC-C
Q 010278 319 DKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV-A 395 (514)
Q Consensus 319 ~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~-~ 395 (514)
++| ++.|+|++|+|.+|.|++||+|.++|++..++|++|++++.++++|.||++|+++|++++..++++|+||+++ +
T Consensus 240 ~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~~~~ 319 (447)
T PLN00043 240 DVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASNSKD 319 (447)
T ss_pred EEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEccCCC
Confidence 999 5889999999999999999999999999999999999999999999999999999999998999999999997 4
Q ss_pred CCccceeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcce
Q 010278 396 KPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNS 475 (514)
Q Consensus 396 ~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~p 475 (514)
.|+..+++|+|+|.||+. ..+|..||++++|||+.+++|+|.+|.+++|.++|+..+++|++|++|+.|.|+|++++|
T Consensus 320 ~p~~~~~~F~A~i~~l~~--~~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~~~~a~v~i~~~~p 397 (447)
T PLN00043 320 DPAKEAANFTSQVIIMNH--PGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKP 397 (447)
T ss_pred CCCccccEEEEEEEEECC--CCCCCCCCeEEEEEccCEEEEEEEEeEEEeccCCccccccCcccccCCCEEEEEEEECCc
Confidence 677889999999999542 278999999999999999999999999999999998888899999999999999999999
Q ss_pred EEeeecccccccceEEEEeCCeEEEEEEEEecCCCCC
Q 010278 476 ICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVSS 512 (514)
Q Consensus 476 i~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~~~~~ 512 (514)
+|+|+|.+|+.||||+|||+|.|+|+|+|+++...++
T Consensus 398 i~~e~~~~~~~lGrf~lrd~~~Tva~G~v~~v~~~~~ 434 (447)
T PLN00043 398 MVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434 (447)
T ss_pred EEEEecccCCCCceEEEEECCCeEEEEEEEEEeccCC
Confidence 9999999999999999999999999999999887544
No 3
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-88 Score=658.24 Aligned_cols=427 Identities=61% Similarity=0.998 Sum_probs=416.0
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEE
Q 010278 78 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 157 (514)
Q Consensus 78 ~~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~ 157 (514)
...+.+.|+.++||+|+||||+-+.+++.+|+++.+.+++|++++.+.+|.||+++|.||+..+||..|-|+..+..+|+
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010278 158 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 158 ~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~ 237 (514)
+..++|+++|+|||..|+.+|+.|+++||+++||++|..|.||.||+.++||++|..+++.+|+.++||+|||||-+.++
T Consensus 154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 233 (501)
T ss_pred ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEEE
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 317 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~i 317 (514)
|++++|+++++++..+|+.+||+...+..++|+|+++|.|+.+..+ ..||||.|++++..|+.++...|..++|++++|
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~-s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~pI 312 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD-SVCPWYKGPIFLEYLDELPHLERILNGPIRCPV 312 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc-ccCCcccCCccceehhccCcccccCCCCEEeeh
Confidence 9999999999999999999999998899999999999999999887 789999999999999999988999999999999
Q ss_pred EEEEccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEccCCCC
Q 010278 318 IDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 397 (514)
Q Consensus 318 ~~~~~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~~ 397 (514)
.+.|+..|||+.|+|+||+++.||.++++|.+..+.|.+|......++.+.||+++.+.|+|+...+|..|.|||+++++
T Consensus 313 ~~KykdmGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~~~n~ 392 (501)
T KOG0459|consen 313 ANKYKDMGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFILCSPNNP 392 (501)
T ss_pred hhhccccceEEEEEecccceecCCeEEEccCCcceEEEEEecccceeeeccCCcceEEEecccchhhccCceEEecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEEEEEeccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcceE
Q 010278 398 VAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSI 476 (514)
Q Consensus 398 ~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~pi 476 (514)
..+.+.|.|+|.++ .| ..|.+||.+++|+|+...+|.| ++++.+|++||.+.++.|+|++.|+.+.++|+...||
T Consensus 393 ~~s~~~F~aqi~Il---E~~sIi~~GY~~VlHIht~ieEv~i-~li~~idkktg~ksKkrprFvkq~~~~iarl~t~~~i 468 (501)
T KOG0459|consen 393 CKSGRTFDAQIVIL---EHKSIICAGYSCVLHIHTAVEEVEI-KLIHLIDKKTGEKSKKRPRFVKQGQKCIARLETEGPI 468 (501)
T ss_pred cccccEEEEEEEEE---ecCceeccCcceEeeeeeehhheee-eeeeeecccccccccCCCeeecCCcEEEEEEecCCcE
Confidence 99999999999995 45 7899999999999999999999 6889999999999999999999999999999999999
Q ss_pred EeeecccccccceEEEEeCCeEEEEEEEEecCC
Q 010278 477 CTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 509 (514)
Q Consensus 477 ~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~~ 509 (514)
|+++|.+||++|||.|||+|+|||+|+|+++.+
T Consensus 469 Cle~fkd~pqmgRFtLRdegkTIAiGkV~kv~~ 501 (501)
T KOG0459|consen 469 CLETFKDYPQMGRFTLRDEGKTIAIGKVLKVVE 501 (501)
T ss_pred ehhhcccchhhcceEEecCCcEEEEEEEEeecC
Confidence 999999999999999999999999999998764
No 4
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=2.1e-85 Score=688.02 Aligned_cols=428 Identities=39% Similarity=0.708 Sum_probs=404.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
.+++++||+++||+|||||||+++|++.+|.++.+.++++++++.+.|++++.|+|++|..++|+++|+|++.+...|++
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
+++.++|||||||++|+++|+++++.+|++||||||..|+||++|+.++||++|+.++..+|+|++||||||||+..++|
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchh
Confidence 99999999999999999999999999999999999999999999987899999999999999999999999999755889
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEEEE
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 318 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~i~ 318 (514)
++.+|+++.+++..+|+.+|++. .++||||+||++|+|+.++.. .++||+|++|++.|+.++.|.+..++||+++|+
T Consensus 163 ~~~~~~~i~~~i~~~l~~~g~~~-~~~~~ipiSa~~g~ni~~~~~--~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~ 239 (446)
T PTZ00141 163 SQERYDEIKKEVSAYLKKVGYNP-EKVPFIPISGWQGDNMIEKSD--NMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQ 239 (446)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCc-ccceEEEeecccCCCcccCCC--CCcccchHHHHHHHhCCCCCCcCCCCCeEEEEE
Confidence 99999999999999999999862 368999999999999987654 489999999999999988888888999999999
Q ss_pred EEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEccCC-
Q 010278 319 DKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA- 395 (514)
Q Consensus 319 ~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~- 395 (514)
++| +|.|+|++|+|.+|+|++||+|.++|++..++|++|++++.++++|.||++|+++|++++..++++||+|++++
T Consensus 240 ~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~~~~ 319 (446)
T PTZ00141 240 DVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASDSKN 319 (446)
T ss_pred EEEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEecCCC
Confidence 999 58899999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCccceeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcce
Q 010278 396 KPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNS 475 (514)
Q Consensus 396 ~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~p 475 (514)
.|+..+++|+|+|.||+. ..+|++||++++||++.+++|+|..|.+++|++||+..+++|++|++|+.+.|+|++++|
T Consensus 320 ~p~~~~~~f~a~i~~l~~--~~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a~v~l~~~~p 397 (446)
T PTZ00141 320 DPAKECADFTAQVIVLNH--PGQIKNGYTPVLDCHTAHIACKFAEIESKIDRRSGKVLEENPKAIKSGDAAIVKMVPTKP 397 (446)
T ss_pred CCCccceEEEEEEEEECC--CCccCCCCeEEEEEeceEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCc
Confidence 566789999999999642 268999999999999999999999999999999999888899999999999999999999
Q ss_pred EEeeecccccccceEEEEeCCeEEEEEEEEecCCCC
Q 010278 476 ICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVS 511 (514)
Q Consensus 476 i~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~~~~ 511 (514)
+|+++|++|+.+|||+||+.|+|+|+|+|+++...+
T Consensus 398 i~~e~~~~~~~lgrfilrd~g~tva~G~I~~v~~~~ 433 (446)
T PTZ00141 398 MCVEVFNEYPPLGRFAVRDMKQTVAVGVIKSVEKKE 433 (446)
T ss_pred eEEeecccCCCCccEEEEECCCEEEEEEEEEEecCC
Confidence 999999999999999999999999999999987654
No 5
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-84 Score=658.58 Aligned_cols=428 Identities=37% Similarity=0.692 Sum_probs=409.1
Q ss_pred cccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEE
Q 010278 76 TEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH 155 (514)
Q Consensus 76 ~~~~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~ 155 (514)
.+...+.+++++++||+|+|||||+|+|||..|.+..+.|.++++++...|+.||.|+|++|.+.+||+||+|.+++...
T Consensus 170 ~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~ 249 (603)
T KOG0458|consen 170 EQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTW 249 (603)
T ss_pred cccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEE
Confidence 44456689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCC
Q 010278 156 FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 156 ~~~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~ 235 (514)
|+...+.++|+|+|||.+|+++|+.|+.+||++||||||+.|.||+||+..+||+||+.+++.+|+.++||+|||||+
T Consensus 250 fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~-- 327 (603)
T KOG0458|consen 250 FESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDL-- 327 (603)
T ss_pred EecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhhhhhhh-hhccCcccCCeeEEeecccccccccccc-ccCCCCCCCcccHHHHhhhccCCCCCCCCCc
Q 010278 236 VNWSKERYDEIESKMTPFL-KASGYNVKKDVQFLPISGLMGLNMKTRV-DKSLCPWWNGPCLFEALDRIEITPRDPNGPF 313 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l-~~~g~~~~~~~~iipiSa~~G~gi~~l~-~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~ 313 (514)
++|+++||++|++.+..|| +.+||. ..++.|||||+++|+|+.... .+.+..||+||||++.|+.+..|.++.++||
T Consensus 328 V~Wsq~RF~eIk~~l~~fL~~~~gf~-es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl 406 (603)
T KOG0458|consen 328 VSWSQDRFEEIKNKLSSFLKESCGFK-ESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKPL 406 (603)
T ss_pred cCccHHHHHHHHHHHHHHHHHhcCcc-cCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhhccCCCCcccCCe
Confidence 9999999999999999999 888997 457899999999999998873 3467889999999999999999989899999
Q ss_pred eEEEEEEEc--cCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEE
Q 010278 314 RMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVL 391 (514)
Q Consensus 314 ~~~i~~~~~--~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl 391 (514)
+++|.++++ +.|..++|+|++|.|++||+|+++|+...++|++|.+++++..+|.|||.|.+.|.++....+..|+++
T Consensus 407 ~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~ 486 (603)
T KOG0458|consen 407 RLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSNDEPKTWAVAGDNVSLKLPGILPNLVQVGDIA 486 (603)
T ss_pred EEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecCCCcceeEeeCCEEEEecCccChhhcccceee
Confidence 999999995 567789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-cCCCCccceeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEE
Q 010278 392 S-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRI 470 (514)
Q Consensus 392 ~-~~~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~ 470 (514)
+ .+..+...+..|.+++.||+. +.||..|.+..+|+|+..++|++.++...+++.||+..++.|++|..|+.|.+++
T Consensus 487 ~~~~~~~i~~~~~f~~~~~~f~~--~~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR~L~~~~~a~vel 564 (603)
T KOG0458|consen 487 DSGPQFPISKTTRFVARITTFDI--NLPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPRCLTSNQSAIVEL 564 (603)
T ss_pred ecCCCccccceeEEEEEEEEeec--cccccCCcceEEEeccccchhhhhhhhhhhccCCCchhhcccceeccCceeeeec
Confidence 9 778888899999999999874 4788899999999999999999999999999999999999999999999999999
Q ss_pred EEcceEEeeecccccccceEEEEeCCeEEEEEEEEecC
Q 010278 471 QVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 508 (514)
Q Consensus 471 ~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~ 508 (514)
+.+.|||+++|.+++.+|||+||..|+|||+|+|+++.
T Consensus 565 e~~~pI~~etf~~~~~lgr~vlr~~g~TiAaG~V~~i~ 602 (603)
T KOG0458|consen 565 ETERPICLETFAENRALGRVVLRKSGSTIAAGKVTEII 602 (603)
T ss_pred cccCchhhhhhhhchhheeEEEeccCceeeeeeEEeec
Confidence 99999999999999999999999999999999999874
No 6
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=2.2e-80 Score=651.84 Aligned_cols=419 Identities=38% Similarity=0.703 Sum_probs=393.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
.+++++||+++||+|||||||+|+|++..|.++.+.++++++++.+.|+.++.++|++|..++|+++|+|++.....|++
T Consensus 2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~ 81 (425)
T PRK12317 2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET 81 (425)
T ss_pred CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCC--CcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCC
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK--GEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~--g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~ 236 (514)
+++.++|||||||++|.++++++++.+|++|||||+.+ +. .+|+++|+.++..++++++||++||||+ .
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~-------~~~~~~~~~~~~~~~~~~iivviNK~Dl--~ 152 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGV-------MPQTREHVFLARTLGINQLIVAINKMDA--V 152 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCC-------CcchHHHHHHHHHcCCCeEEEEEEcccc--c
Confidence 99999999999999999999999999999999999998 63 3799999999999998779999999999 6
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEE
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 316 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~ 316 (514)
+|++.+++.+.+++..+++.+++.. ..++++|+||++|.|+.++.+. ++||+|++|+++|+.++.+.+..++||+|+
T Consensus 153 ~~~~~~~~~~~~~i~~~l~~~g~~~-~~~~ii~iSA~~g~gi~~~~~~--~~wy~g~~L~~~l~~~~~~~~~~~~p~r~~ 229 (425)
T PRK12317 153 NYDEKRYEEVKEEVSKLLKMVGYKP-DDIPFIPVSAFEGDNVVKKSEN--MPWYNGPTLLEALDNLKPPEKPTDKPLRIP 229 (425)
T ss_pred cccHHHHHHHHHHHHHHHHhhCCCc-CcceEEEeecccCCCccccccC--CCcccHHHHHHHHhcCCCCccccCCCcEEE
Confidence 6777889999999999999888752 2478999999999999998764 899999999999999988888889999999
Q ss_pred EEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEccC
Q 010278 317 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV 394 (514)
Q Consensus 317 i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~ 394 (514)
|+++| ++.|+|++|+|.+|+|++||+|+++|++..++|++|++++.+++.|.||++|+++|++++..++++||+|+++
T Consensus 230 i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~ 309 (425)
T PRK12317 230 IQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHP 309 (425)
T ss_pred EEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCC
Confidence 99999 6899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccceeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcc
Q 010278 395 AKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNN 474 (514)
Q Consensus 395 ~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~ 474 (514)
++++..+++|+|+|.||+. ..+|++||++++|+++.+++|+|.+|.+.+|++|++..+++|++|++|+.+.|+|+|.+
T Consensus 310 ~~~~~~~~~f~a~v~~l~~--~~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~p~~l~~g~~a~v~l~~~~ 387 (425)
T PRK12317 310 DNPPTVAEEFTAQIVVLQH--PSAITVGYTPVFHAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPTK 387 (425)
T ss_pred CCCCCcccEEEEEEEEECC--CCcCCCCCeEEEEEcCcEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECC
Confidence 8888889999999999542 26899999999999999999999999999999999988899999999999999999999
Q ss_pred eEEeeecccccccceEEEEeCCeEEEEEEEEecCCCC
Q 010278 475 SICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVS 511 (514)
Q Consensus 475 pi~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~~~~ 511 (514)
|+|+++|++++.+|||+||++|+|+|+|+|+++.++.
T Consensus 388 p~~~~~~~~~~~lgrfilr~~g~tv~~G~i~~v~~~~ 424 (425)
T PRK12317 388 PLVIEKVKEIPQLGRFAIRDMGQTIAAGMVIDVKPAK 424 (425)
T ss_pred eeEEEeCCcCCCCccEEEEECCCeEEEEEEEEeccCC
Confidence 9999999999999999999999999999999987653
No 7
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=1.9e-79 Score=644.57 Aligned_cols=421 Identities=38% Similarity=0.693 Sum_probs=394.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
.++++++|+++||+|||||||+++|++.+|.++.+.++++++++...|+.++.|+|++|..++|+++|+|++.+...|.+
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~ 82 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET 82 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
+++.++|+|||||++|.++++.+++.+|++|||||++++.++ ...|+.+|+.++..++++++||++||+|+ .+|
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~----~~~~t~~~~~~~~~~~~~~iIVviNK~Dl--~~~ 156 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE----VQPQTREHAFLARTLGINQLIVAINKMDS--VNY 156 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc----cCCchHHHHHHHHHcCCCeEEEEEEChhc--cCc
Confidence 999999999999999999999999999999999999998543 34799999999999998779999999999 677
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEEEE
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 318 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~i~ 318 (514)
++++++.+.+++..+++..++.. ..++++|+||++|.|+.++... ++||+|++|++.|+.++++.+..++||+|+|+
T Consensus 157 ~~~~~~~~~~ei~~~~~~~g~~~-~~~~~i~iSA~~g~ni~~~~~~--~~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~ 233 (426)
T TIGR00483 157 DEEEFEAIKKEVSNLIKKVGYNP-DTVPFIPISAWNGDNVIKKSEN--TPWYKGKTLLEALDALEPPEKPTDKPLRIPIQ 233 (426)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCc-ccceEEEeeccccccccccccC--CccccchHHHHHHhcCCCCCCccCCCcEEEEE
Confidence 88889999999999999988752 2579999999999999987654 89999999999999998888888899999999
Q ss_pred EEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEccCCC
Q 010278 319 DKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 396 (514)
Q Consensus 319 ~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~ 396 (514)
++| +|.|+|++|+|.+|+|++||.|+++|.+..++|++|++++.++++|.||++|+++|++++..++++||+|++++.
T Consensus 234 ~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~~ 313 (426)
T TIGR00483 234 DVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPDN 313 (426)
T ss_pred EEEecCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecCCC
Confidence 999 589999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CccceeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcceE
Q 010278 397 PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSI 476 (514)
Q Consensus 397 ~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~pi 476 (514)
+++.+++|+|++.||+. ..+|.+||++++|+++.+++|+|.+|.+.+|+++++..+++|++|++|+.+.|+|+|++|+
T Consensus 314 ~~~~~~~f~a~v~~l~~--~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi 391 (426)
T TIGR00483 314 PPKVAKEFTAQIVVLQH--PGAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTKPM 391 (426)
T ss_pred CCceeeEEEEEEEEECC--CCccCCCCeEEEEecCcEEEEEEEEEEEEecCccccccCCCCceeCCCCEEEEEEEECCee
Confidence 88889999999999542 2689999999999999999999999999999999998889999999999999999999999
Q ss_pred EeeecccccccceEEEEeCCeEEEEEEEEecCCC
Q 010278 477 CTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 510 (514)
Q Consensus 477 ~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~~~ 510 (514)
|+++|++++.+|||+||+.|+|||+|+|+++.++
T Consensus 392 ~~e~~~~~~~~grf~lr~~g~tv~~G~v~~~~~~ 425 (426)
T TIGR00483 392 VIEAVKEIPPLGRFAIRDMGQTVAAGMIIDVDPT 425 (426)
T ss_pred EEeecccCCCCccEEEEECCCEEEEEEEEEeeec
Confidence 9999999999999999999999999999988653
No 8
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6e-77 Score=573.08 Aligned_cols=409 Identities=31% Similarity=0.504 Sum_probs=380.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcC--ccchhhhhhccCchhhhhcccEEEeeeEEE
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKS--RESWYMAYIMDTNEEERIKGKTVEVGRAHF 156 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g--~~s~~~~~~~d~~~~e~~~giT~~~~~~~~ 156 (514)
+.+..+++..+|+||.|||||+|+|||++..+-..++..+++.+...| ...+.++.++|..+.||+.||||++++.+|
T Consensus 2 ~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF 81 (431)
T COG2895 2 QHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF 81 (431)
T ss_pred CcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence 356789999999999999999999999999999999999988886444 356789999999999999999999999999
Q ss_pred EeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCC
Q 010278 157 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 157 ~~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~ 236 (514)
.+++++|.+.|||||+.|.+||..|++.||.||++|||.+|+. .||++|..++..+|++|+|+++||||+ +
T Consensus 82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl-------~QTrRHs~I~sLLGIrhvvvAVNKmDL--v 152 (431)
T COG2895 82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVL-------EQTRRHSFIASLLGIRHVVVAVNKMDL--V 152 (431)
T ss_pred ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhH-------HHhHHHHHHHHHhCCcEEEEEEeeecc--c
Confidence 9999999999999999999999999999999999999999976 599999999999999999999999999 9
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEE
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 316 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~ 316 (514)
+|++++|++|..+...+.+++|+. ...+||+||+.|+|+...++ .||||+||+|++.|+.+........++|||+
T Consensus 153 dy~e~~F~~I~~dy~~fa~~L~~~---~~~~IPiSAl~GDNV~~~s~--~mpWY~GptLLe~LE~v~i~~~~~~~~~RfP 227 (431)
T COG2895 153 DYSEEVFEAIVADYLAFAAQLGLK---DVRFIPISALLGDNVVSKSE--NMPWYKGPTLLEILETVEIADDRSAKAFRFP 227 (431)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCC---cceEEechhccCCccccccc--CCCcccCccHHHHHhhccccccccccceeec
Confidence 999999999999999999999987 56999999999999998755 5999999999999999988777778899999
Q ss_pred EEEEEc-cC-CeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEccC
Q 010278 317 IIDKFK-DM-GTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV 394 (514)
Q Consensus 317 i~~~~~-~~-G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~ 394 (514)
|+.+.+ +. =+-+.|+|.+|++++||.|+++|+++..+|++|..+..++.+|.+|+.|++.|. +..+++||++|+..
T Consensus 228 VQ~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg~~~~A~aG~aVtl~L~--deidisRGd~i~~~ 305 (431)
T COG2895 228 VQYVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDGELAQASAGEAVTLVLA--DEIDISRGDLIVAA 305 (431)
T ss_pred eEEecCCCCcccccceeeeccceecCCeEEEccCCCeeeEEEEeccCCchhhccCCceEEEEEc--ceeecccCcEEEcc
Confidence 999984 21 122899999999999999999999999999999999999999999999999998 78899999999999
Q ss_pred CCCccceeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcc
Q 010278 395 AKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNN 474 (514)
Q Consensus 395 ~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~ 474 (514)
+.+|..++.|.|.++| +...++.+|..|.+.+++..+.++|..|.+++|.+|.+.. .++.|..|+.+.|++.+++
T Consensus 306 ~~~~~~~~~f~A~vvW---m~~~pl~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~~--~a~~l~lN~Ig~v~i~~~~ 380 (431)
T COG2895 306 DAPPAVADAFDADVVW---MDEEPLLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQE--GAESLPLNEIGRVRISFDK 380 (431)
T ss_pred CCCcchhhhcceeEEE---ecCCCCCCCceEEEEecceEEEEEeeeeEEEEeccccccc--cccccCCCcceEEEEecCC
Confidence 9999999999999999 5567889999999999999999999999999999998754 6788999999999999999
Q ss_pred eEEeeecccccccceEEEEeC--CeEEEEEEEEecC
Q 010278 475 SICTEKFADFAQLGRFTLRTE--GKTVAVGKVTELP 508 (514)
Q Consensus 475 pi~~e~~~~~~~lgrfilr~~--g~tva~G~I~~v~ 508 (514)
|+++++|.+++.+|+|||.|. +.|||+|+|.+-.
T Consensus 381 pi~fd~Y~~N~atG~FIlID~~tn~TVgaGmI~~~l 416 (431)
T COG2895 381 PIAFDAYAENRATGSFILIDRLTNGTVGAGMILASL 416 (431)
T ss_pred ceeecccccCcccccEEEEEcCCCCceeceeeechh
Confidence 999999999999999999985 7899999998644
No 9
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=1.2e-75 Score=618.73 Aligned_cols=410 Identities=28% Similarity=0.443 Sum_probs=377.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCcc--chhhhhhccCchhhhhcccEEEeeeEEE
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRE--SWYMAYIMDTNEEERIKGKTVEVGRAHF 156 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~--s~~~~~~~d~~~~e~~~giT~~~~~~~~ 156 (514)
..+++++|+++||+|||||||+++||+.+|.++.+.+.++++++...|++ ++.|+|++|..++|++||+|++.+...|
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 45778999999999999999999999999999999999999999999986 7899999999999999999999999999
Q ss_pred EeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCC
Q 010278 157 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 157 ~~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~ 236 (514)
++++++++|||||||++|.+++..++..+|++||||||..|+. .||++|+.++..++++++||++||||+ .
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~-------~qt~~~~~l~~~lg~~~iIvvvNKiD~--~ 173 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVL-------DQTRRHSFIATLLGIKHLVVAVNKMDL--V 173 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-------ccchHHHHHHHHhCCCceEEEEEeecc--c
Confidence 9999999999999999999999999999999999999999954 699999999999998879999999999 6
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEE
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 316 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~ 316 (514)
+|++++++++.+++..+++.+++. ...++||+||++|+|+.++.. .++||+|++|+++|+.++.+.+..+.|||++
T Consensus 174 ~~~~~~~~~i~~~l~~~~~~~~~~--~~~~iipvSA~~g~ni~~~~~--~~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~ 249 (474)
T PRK05124 174 DYSEEVFERIREDYLTFAEQLPGN--LDIRFVPLSALEGDNVVSQSE--SMPWYSGPTLLEVLETVDIQRVVDAQPFRFP 249 (474)
T ss_pred cchhHHHHHHHHHHHHHHHhcCCC--CCceEEEEEeecCCCcccccc--cccccchhhHHHHHhhcCCCCCCCCCCceee
Confidence 778888999999998888887742 257999999999999998764 4899999999999999988878888999999
Q ss_pred EEEEEcc--CCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEccC
Q 010278 317 IIDKFKD--MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV 394 (514)
Q Consensus 317 i~~~~~~--~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~ 394 (514)
|+++++. ....+.|+|.+|+|++||+|+++|++..++|++|++++.+++.|.||++|+++|++ ..++++|||||++
T Consensus 250 I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aG~~V~l~L~~--~~~i~rG~VL~~~ 327 (474)
T PRK05124 250 VQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFDGDLEEAFAGEAITLVLED--EIDISRGDLLVAA 327 (474)
T ss_pred EEEEEecCCcccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEcCccccCcCCCCEEEEEeCC--ccccCCccEEECC
Confidence 9999742 11227899999999999999999999999999999999999999999999999985 5679999999999
Q ss_pred CCCccceeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcc
Q 010278 395 AKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNN 474 (514)
Q Consensus 395 ~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~ 474 (514)
+.++..+++|+|++.||+ ..+|++||++.+|+|+.+++|+|..|.+++|++||+. .+|.+|++|+.+.|+|++++
T Consensus 328 ~~~~~~~~~f~a~i~~l~---~~~i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t~~~--~~~~~l~~g~~a~v~l~~~~ 402 (474)
T PRK05124 328 DEALQAVQHASADVVWMA---EQPLQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQ--REAENLPLNGIGLVELTFDE 402 (474)
T ss_pred CCCCccceEEEEEEEEeC---CcccCCCCeEEEEeCCCEEEEEEEEEeeeeccCCCcc--cCccccCCCCEEEEEEEECC
Confidence 888888999999999954 4679999999999999999999999999999999974 45889999999999999999
Q ss_pred eEEeeecccccccceEEEE--eCCeEEEEEEEEecC
Q 010278 475 SICTEKFADFAQLGRFTLR--TEGKTVAVGKVTELP 508 (514)
Q Consensus 475 pi~~e~~~~~~~lgrfilr--~~g~tva~G~I~~v~ 508 (514)
|+|+++|.+++.||||+|| +++.|||+|+|+++.
T Consensus 403 pv~~e~~~~~~~lGRfil~dr~~~~tva~G~V~~~~ 438 (474)
T PRK05124 403 PLVLDPYQQNRVTGGFIFIDRLTNVTVGAGMVREPL 438 (474)
T ss_pred eeccccCCcCCcceeEEEEECCCCceEEEEEEeccc
Confidence 9999999999999999995 579999999999876
No 10
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=9.8e-76 Score=610.72 Aligned_cols=400 Identities=29% Similarity=0.496 Sum_probs=371.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCcc--chhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRE--SWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~--s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
++|+++||+|||||||+++||+.+|.++.+.+.++++++...|++ ||.|+|++|..++|++||+|++.+...|+++++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 479999999999999999999999999999999999999999986 799999999999999999999999999999999
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHH
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 241 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~ 241 (514)
+++|+|||||++|+++|..++..+|++||||||..|++ +||++|+.++..++++++||++||||+ .+|+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-------~qt~~~~~~~~~~~~~~iivviNK~D~--~~~~~~ 151 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL-------EQTRRHSYIASLLGIRHVVLAVNKMDL--VDYDEE 151 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-------cccHHHHHHHHHcCCCcEEEEEEeccc--ccchHH
Confidence 99999999999999999999999999999999999964 699999999999999889999999999 667788
Q ss_pred HHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEEEEEEE
Q 010278 242 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF 321 (514)
Q Consensus 242 ~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~i~~~~ 321 (514)
+++++.+++..+++.+++. +++++|+||++|.|+.++.+ .++||+|++|+++|+.++.+.+..++||+++|++++
T Consensus 152 ~~~~i~~~~~~~~~~~~~~---~~~iipiSA~~g~ni~~~~~--~~~wy~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~ 226 (406)
T TIGR02034 152 VFENIKKDYLAFAEQLGFR---DVTFIPLSALKGDNVVSRSE--SMPWYSGPTLLEILETVEVERDAQDLPLRFPVQYVN 226 (406)
T ss_pred HHHHHHHHHHHHHHHcCCC---CccEEEeecccCCCCccccc--CCCccchhHHHHHHHhcCCCCCcCCCCcccceEEEe
Confidence 8999999999999888875 67999999999999998765 489999999999999998888888899999999997
Q ss_pred c--cCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEccCCCCcc
Q 010278 322 K--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVA 399 (514)
Q Consensus 322 ~--~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~~~~ 399 (514)
+ ..+.-+.|+|.+|+|++||+|.++|++..++|++|++++.++++|.||++|+++|++ ..++++||+|+++++++.
T Consensus 227 ~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~~G~~v~l~l~~--~~~i~rG~vl~~~~~~~~ 304 (406)
T TIGR02034 227 RPNLDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFDGDLEQARAGQAVTLTLDD--EIDISRGDLLAAADSAPE 304 (406)
T ss_pred ecCCCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEECCcccCEeCCCCEEEEEECC--ccccCCccEEEcCCCCCC
Confidence 4 223337899999999999999999999999999999999999999999999999984 467999999999998888
Q ss_pred ceeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcceEEee
Q 010278 400 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 479 (514)
Q Consensus 400 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~pi~~e 479 (514)
.++.|+|++.||+ +.+|+.||++++|+|+.+++|+|..|.+.+|++||+. .+|++|++|+.+.|+|++++|+|++
T Consensus 305 ~~~~f~a~i~~l~---~~~i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t~~~--~~~~~l~~~~~~~v~l~~~~p~~~~ 379 (406)
T TIGR02034 305 VADQFAATLVWMA---EEPLLPGRSYDLKLGTRKVRASVAAIKHKVDVNTLEK--GAAKSLELNEIGRVNLSLDEPIAFD 379 (406)
T ss_pred cceEEEEEEEEeC---hhhcCCCCEEEEEeCCCEEEEEEEEEEEEecCCCCcc--cCCcccCCCCEEEEEEEECCeeccC
Confidence 8999999999954 5689999999999999999999999999999999974 4578999999999999999999999
Q ss_pred ecccccccceEEE--EeCCeEEEEEEE
Q 010278 480 KFADFAQLGRFTL--RTEGKTVAVGKV 504 (514)
Q Consensus 480 ~~~~~~~lgrfil--r~~g~tva~G~I 504 (514)
+|++++.||||+| |++|+|||+|+|
T Consensus 380 ~~~~~~~lGr~~l~d~~~~~tva~G~I 406 (406)
T TIGR02034 380 PYAENRTTGAFILIDRLSNRTVGAGMI 406 (406)
T ss_pred cccCCCcceeEEEEECCCCCeEEEEeC
Confidence 9999999999999 668999999986
No 11
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=7.5e-72 Score=612.46 Aligned_cols=411 Identities=29% Similarity=0.460 Sum_probs=378.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCc--cchhhhhhccCchhhhhcccEEEeeeEEE
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSR--ESWYMAYIMDTNEEERIKGKTVEVGRAHF 156 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~--~s~~~~~~~d~~~~e~~~giT~~~~~~~~ 156 (514)
..++.++|+++||+|||||||+|+|++.+|.++.+.+.++++++...|. .++.++|.+|..++|+++|+|++.+...|
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 4556789999999999999999999999999999999999999999997 78999999999999999999999999999
Q ss_pred EeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCC
Q 010278 157 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 157 ~~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~ 236 (514)
++++++++|+|||||++|.++++.++..+|++|||||+..|.+ +||++|+.++..++++++||++||||+ +
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-------~~t~e~~~~~~~~~~~~iivvvNK~D~--~ 170 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-------TQTRRHSFIASLLGIRHVVLAVNKMDL--V 170 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-------ccCHHHHHHHHHhCCCeEEEEEEeccc--c
Confidence 9999999999999999999999999999999999999999954 699999999999998889999999999 6
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEE
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 316 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~ 316 (514)
+|++++++++..++..+++.+++. +++++|+||++|.|+.++.+ .++||.|++|+++|+.++.+.+..++||+++
T Consensus 171 ~~~~~~~~~i~~~i~~~~~~~~~~---~~~iipiSA~~g~ni~~~~~--~~~wy~g~tL~~~l~~~~~~~~~~~~p~r~~ 245 (632)
T PRK05506 171 DYDQEVFDEIVADYRAFAAKLGLH---DVTFIPISALKGDNVVTRSA--RMPWYEGPSLLEHLETVEIASDRNLKDFRFP 245 (632)
T ss_pred cchhHHHHHHHHHHHHHHHHcCCC---CccEEEEecccCCCcccccc--CCCcccHhHHHHHHhcCCCCCCcCCCCceee
Confidence 778888999999999999988884 67899999999999998765 3899999999999999987777788999999
Q ss_pred EEEEEcc--CCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEccC
Q 010278 317 IIDKFKD--MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV 394 (514)
Q Consensus 317 i~~~~~~--~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~ 394 (514)
|.++++. .+.-+.|+|.+|+|++||+|.++|++..++|++|++++.++++|.||++|+++|++ ..++++|+|||++
T Consensus 246 i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~--~~~i~rG~vL~~~ 323 (632)
T PRK05506 246 VQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPDGDLDEAFAGQAVTLTLAD--EIDISRGDMLARA 323 (632)
T ss_pred EEEEEecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEECCceeCEEcCCCeEEEEecC--ccccCCccEEecC
Confidence 9999752 22337899999999999999999999999999999999999999999999999984 4679999999999
Q ss_pred CCCccceeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcc
Q 010278 395 AKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNN 474 (514)
Q Consensus 395 ~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~ 474 (514)
+++++.+++|+|++.||+ +.++.+||++++|+|+.+++|+|..|.+++|++|++. ++|++|++|+.+.|+|++++
T Consensus 324 ~~~~~~~~~f~a~i~~l~---~~~~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t~~~--~~p~~l~~g~~~~v~l~~~~ 398 (632)
T PRK05506 324 DNRPEVADQFDATVVWMA---EEPLLPGRPYLLKHGTRTVPASVAAIKYRVDVNTLER--LAAKTLELNEIGRCNLSTDA 398 (632)
T ss_pred CCCCcceeEEEEEEEEec---ccccCCCCeEEEEeCCCEEEEEEEEEEEEecCCCCcc--CCcceeCCCCEEEEEEEECC
Confidence 988888999999999954 5567799999999999999999999999999998873 78999999999999999999
Q ss_pred eEEeeecccccccceEEEEe--CCeEEEEEEEEecCCC
Q 010278 475 SICTEKFADFAQLGRFTLRT--EGKTVAVGKVTELPTV 510 (514)
Q Consensus 475 pi~~e~~~~~~~lgrfilr~--~g~tva~G~I~~v~~~ 510 (514)
|+|+++|.+|+.||||+||| +|+|+|+|+|+...+.
T Consensus 399 pi~~e~~~~~~~lGRfilrdr~~~~Tva~G~I~~~~~~ 436 (632)
T PRK05506 399 PIAFDPYARNRTTGSFILIDRLTNATVGAGMIDFALRR 436 (632)
T ss_pred EEeeeeccccccCceEEEEeccCCceEEEEEECccccc
Confidence 99999999999999999965 8999999999987663
No 12
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=4.9e-68 Score=558.09 Aligned_cols=389 Identities=28% Similarity=0.468 Sum_probs=341.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
.+++++||+++||+|||||||+++|++..+.+..+..++ ...+|..++|+.+|+|++.+...|++
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~---------------~~~~D~~~~Er~rGiTi~~~~~~~~~ 141 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKK---------------YDEIDAAPEERARGITINTATVEYET 141 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccc---------------cccccCChhHHhCCeeEEEEEEEEec
Confidence 568899999999999999999999999888765433221 13589999999999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
+++.++|||||||++|+++++++++.+|++||||||.+|.. +||++|+.++..+|+|++||++||||+ .+
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~-------~qt~e~~~~~~~~gi~~iIvvvNK~Dl--~~- 211 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPM-------PQTKEHILLAKQVGVPNMVVFLNKQDQ--VD- 211 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEecccc--cC-
Confidence 99999999999999999999999999999999999999954 799999999999999989999999999 44
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc---cccCCCCCCC-cccHHHHhhhc-cCCCCCCCCCc
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR---VDKSLCPWWN-GPCLFEALDRI-EITPRDPNGPF 313 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l---~~~~~~~w~~-g~tL~~~l~~l-~~~~~~~~~p~ 313 (514)
.++.++.+.+++..+|+.+||.. .++|++|+||++|.|+... ......+||+ +++|++.|+.+ +.|.++.++||
T Consensus 212 ~~~~~~~i~~~i~~~l~~~g~~~-~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~ 290 (478)
T PLN03126 212 DEELLELVELEVRELLSSYEFPG-DDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPF 290 (478)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCc-CcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccce
Confidence 35568888889999999999862 4789999999999877421 1112358998 57888888874 45777788999
Q ss_pred eEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCC--cEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeee
Q 010278 314 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 389 (514)
Q Consensus 314 ~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~--~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~ 389 (514)
+|+|+++| +|+|+|++|+|.+|.|++||.|.++|.+ ..++|++|++++.++++|.|||+|+++|++++..++++|+
T Consensus 291 r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~ 370 (478)
T PLN03126 291 LLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGM 370 (478)
T ss_pred eeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEECCeECCEEeCCceeeeeccCCcHHHcCCcc
Confidence 99999999 5899999999999999999999999975 5789999999999999999999999999999999999999
Q ss_pred EEccCCCCccceeEEEEEEEEecccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEE
Q 010278 390 VLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIV 466 (514)
Q Consensus 390 vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a 466 (514)
+|++++. +..+++|+|++.||+... +.+|.+||++++|+|+.+++|+|..|.+..+ ++|++|++|+.+
T Consensus 371 VL~~~~~-~~~~~~F~A~i~vL~~~~gg~~~~I~~G~~~~lhigt~~~~~~I~~i~~~~~--------~~~~~l~~gd~a 441 (478)
T PLN03126 371 VLAKPGS-ITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKD--------EESKMVMPGDRV 441 (478)
T ss_pred EEecCCC-CCceEEEEEEEEEecccccCCcccccCCcEEEEEEEecEEEEEEEEEecccC--------CCccEeCCCCEE
Confidence 9999874 567899999999976421 3689999999999999999999998865432 357889999999
Q ss_pred EEEEEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecC
Q 010278 467 VCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 508 (514)
Q Consensus 467 ~v~~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~ 508 (514)
.|+|+|++|+|+++ ++||+||+.|+|+|+|+|+++.
T Consensus 442 ~v~l~~~~Pi~~~~------~~RfilR~~~~Tva~G~V~~v~ 477 (478)
T PLN03126 442 KMVVELIVPVACEQ------GMRFAIREGGKTVGAGVIQSII 477 (478)
T ss_pred EEEEEECCeEEEcc------CCEEEEecCCceEEEEEEEEec
Confidence 99999999999986 5899999999999999999875
No 13
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=1e-66 Score=543.97 Aligned_cols=390 Identities=31% Similarity=0.467 Sum_probs=340.9
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
.++++++|+++||+|||||||+|+|++..|.++.+.. ..++ .+|..++|+++|+|++.....|++
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~--------------~~~~-~~d~~~~e~~rg~T~~~~~~~~~~ 72 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKA--------------KKYD-EIDSAPEEKARGITINTAHVEYET 72 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccc--------------cccc-cccCChhhhcCCEeEEccEEEEcc
Confidence 4678899999999999999999999998887643321 1112 589999999999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
++++++|+|||||.+|++++++++..+|+++|||||..|.. +||++|+.++..+|+|++|+++||||+ +++
T Consensus 73 ~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-------~qt~~~~~~~~~~g~~~iIvvvNK~D~--~~~ 143 (409)
T CHL00071 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-------PQTKEHILLAKQVGVPNIVVFLNKEDQ--VDD 143 (409)
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCEEEEEEEccCC--CCH
Confidence 99999999999999999999999999999999999999854 799999999999999988899999999 543
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccccc---CCCCCCCc-ccHHHHhhh-ccCCCCCCCCCc
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDK---SLCPWWNG-PCLFEALDR-IEITPRDPNGPF 313 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~---~~~~w~~g-~tL~~~l~~-l~~~~~~~~~p~ 313 (514)
++.++.+.+++..+|+.++++. ..+|++|+||++|+|+...... ...+||++ ++|++.|+. ++.|.++.++||
T Consensus 144 -~~~~~~~~~~l~~~l~~~~~~~-~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~ 221 (409)
T CHL00071 144 -EELLELVELEVRELLSKYDFPG-DDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPF 221 (409)
T ss_pred -HHHHHHHHHHHHHHHHHhCCCC-CcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCE
Confidence 4577888899999999998863 3589999999999998754322 12589985 999998887 466777788999
Q ss_pred eEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecC--CcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeee
Q 010278 314 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 389 (514)
Q Consensus 314 ~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~--~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~ 389 (514)
+++|+++| ++.|+|++|+|.+|+|++||.|.+.|. +..++|++|+++++++++|.|||+|+++|++++..++++||
T Consensus 222 r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~ 301 (409)
T CHL00071 222 LMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQKEDIERGM 301 (409)
T ss_pred EEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcCcCCCEECCCceeEEEEcCCCHHHcCCeE
Confidence 99999999 688999999999999999999998874 57799999999999999999999999999999989999999
Q ss_pred EEccCCCCccceeEEEEEEEEecccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEE
Q 010278 390 VLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIV 466 (514)
Q Consensus 390 vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a 466 (514)
+|++++ ++.++++|+|++.+|+... ..+|.+||++++|+|+.+++|+|..|... + .++|++|++|+.+
T Consensus 302 vl~~~~-~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~gt~~~~~~i~~i~~~----~----~~~~~~l~~g~~a 372 (409)
T CHL00071 302 VLAKPG-TITPHTKFEAQVYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTAD----D----GSKTEMVMPGDRI 372 (409)
T ss_pred EEecCC-CCCcceEEEEEEEEEecccCCccccccCCceEEEEEcccEEEEEEEEEccc----C----CCCCcEecCCCEE
Confidence 999987 4567899999999976432 36899999999999999999999988643 1 2568899999999
Q ss_pred EEEEEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecCC
Q 010278 467 VCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 509 (514)
Q Consensus 467 ~v~~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~~ 509 (514)
.|+|+|++|+|++++ |||+||+.|+|+|+|+|+++.+
T Consensus 373 ~v~l~~~~pi~~e~~------~rfilR~~~~tig~G~V~~~~~ 409 (409)
T CHL00071 373 KMTVELIYPIAIEKG------MRFAIREGGRTVGAGVVSKILK 409 (409)
T ss_pred EEEEEECCeEEEeeC------CEEEEecCCeEEEEEEEEEecC
Confidence 999999999999985 7999999999999999998753
No 14
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.7e-66 Score=540.14 Aligned_cols=379 Identities=30% Similarity=0.439 Sum_probs=332.2
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
..+++++|+++||+|||||||+++|++..+ ..|+.++...+.+|.+++|+++|+|++.....+++
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~ 72 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET 72 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhh---------------hcCCcccchhhhccCChhHHhcCceEEEeeeEEcC
Confidence 457889999999999999999999987432 23444444446799999999999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
++++++|+|||||++|++++++++..+|+++||||+..|.. +|+++|+.++..+|+|++||++||||+ .+
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~-------~qt~e~l~~~~~~gi~~iivvvNK~Dl--~~- 142 (396)
T PRK12735 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-------PQTREHILLARQVGVPYIVVFLNKCDM--VD- 142 (396)
T ss_pred CCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-------hhHHHHHHHHHHcCCCeEEEEEEecCC--cc-
Confidence 99999999999999999999999999999999999999854 799999999999999977678999999 43
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCc-ccHHHHhhh-ccCCCCCCCCCceEE
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRMP 316 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g-~tL~~~l~~-l~~~~~~~~~p~~~~ 316 (514)
+++.++.+.+++..+++.+++.. .+++++|+||++|.|... .++||.+ ++|++.|+. ++.|.+..++||+++
T Consensus 143 ~~~~~~~~~~ei~~~l~~~~~~~-~~~~ii~~Sa~~g~n~~~-----~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~ 216 (396)
T PRK12735 143 DEELLELVEMEVRELLSKYDFPG-DDTPIIRGSALKALEGDD-----DEEWEAKILELMDAVDSYIPEPERAIDKPFLMP 216 (396)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCc-CceeEEecchhccccCCC-----CCcccccHHHHHHHHHhcCCCCCccCCCCeEEE
Confidence 34567788889999999988742 358999999999999642 3789965 889998886 566777888999999
Q ss_pred EEEEE--ccCCeEEEEEEeeeeeecCCEEEEecC--CcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEc
Q 010278 317 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 392 (514)
Q Consensus 317 i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~--~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~ 392 (514)
|+++| +|.|+|++|+|.+|+|++||+|+++|. +..++|++|+++++++++|.|||+|+++|+|++..++++|+|||
T Consensus 217 I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~ 296 (396)
T PRK12735 217 IEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLA 296 (396)
T ss_pred EEEEEecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcHHHCCcceEEE
Confidence 99999 689999999999999999999999997 47899999999999999999999999999999999999999999
Q ss_pred cCCCCccceeEEEEEEEEecccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEE
Q 010278 393 SVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 469 (514)
Q Consensus 393 ~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~ 469 (514)
+++ ++.+++.|+|++.+|+... +.+|..||++++|+|+.+++|+|.. .++|++|++|+.+.|+
T Consensus 297 ~~~-~~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~-------------~~~~~~l~~g~~a~v~ 362 (396)
T PRK12735 297 KPG-SIKPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGTIEL-------------PEGVEMVMPGDNVKMT 362 (396)
T ss_pred cCC-CCCcceEEEEEEEEEecccCCCCCcccCCCeeEEEeccceEEEEEEc-------------cCCCceeCCCCEEEEE
Confidence 987 4567899999999976321 3578999999999999999999841 2357789999999999
Q ss_pred EEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecC
Q 010278 470 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 508 (514)
Q Consensus 470 ~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~ 508 (514)
|+|++|+|++++ |||+||+.|+|+|+|+|+++.
T Consensus 363 l~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~ 395 (396)
T PRK12735 363 VELIAPIAMEEG------LRFAIREGGRTVGAGVVAKII 395 (396)
T ss_pred EEECceEEEeEC------CEEEEEcCCcEEEEEEEEEec
Confidence 999999999985 899999999999999999875
No 15
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=3e-66 Score=537.78 Aligned_cols=379 Identities=31% Similarity=0.453 Sum_probs=330.9
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
..++++||+++||+|||||||+++|++... ..|+......+.+|..++|+++|+|++.....+++
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~ 72 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET 72 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhh---------------hccCCcccchhhccCChHHHhcCeEEeeeEEEEcC
Confidence 457889999999999999999999986432 12222222233799999999999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
++++++|+|||||.+|++++.+++..+|++++|||+..|.. +||++|+.++..+++|.+||++||||+ .+
T Consensus 73 ~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-------~qt~~~~~~~~~~g~p~iiVvvNK~D~--~~- 142 (396)
T PRK00049 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-------PQTREHILLARQVGVPYIVVFLNKCDM--VD- 142 (396)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-------hHHHHHHHHHHHcCCCEEEEEEeecCC--cc-
Confidence 99999999999999999999999999999999999999853 799999999999999966679999999 43
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCc-ccHHHHhhh-ccCCCCCCCCCceEE
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRMP 316 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g-~tL~~~l~~-l~~~~~~~~~p~~~~ 316 (514)
.++.++.+.+++..+|+.+++. ..++|++|+||++|.+- ...++||++ ++|+++|+. ++.|.+..++||+|+
T Consensus 143 ~~~~~~~~~~~i~~~l~~~~~~-~~~~~iv~iSa~~g~~~-----~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~ 216 (396)
T PRK00049 143 DEELLELVEMEVRELLSKYDFP-GDDTPIIRGSALKALEG-----DDDEEWEKKILELMDAVDSYIPTPERAIDKPFLMP 216 (396)
T ss_pred hHHHHHHHHHHHHHHHHhcCCC-ccCCcEEEeecccccCC-----CCcccccccHHHHHHHHHhcCCCCCCCCCCCeEEE
Confidence 4556778888999999999884 24689999999999873 234789975 899999887 666777889999999
Q ss_pred EEEEE--ccCCeEEEEEEeeeeeecCCEEEEecC--CcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEc
Q 010278 317 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 392 (514)
Q Consensus 317 i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~--~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~ 392 (514)
|+++| +|.|+|++|+|.+|+|++||+|.++|. +..++|++|++++.++++|.|||+|+++|++++..++++|++||
T Consensus 217 I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~ 296 (396)
T PRK00049 217 IEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVLA 296 (396)
T ss_pred EEEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCHHHCCcceEEe
Confidence 99999 589999999999999999999999986 68899999999999999999999999999999999999999999
Q ss_pred cCCCCccceeEEEEEEEEecccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEE
Q 010278 393 SVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 469 (514)
Q Consensus 393 ~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~ 469 (514)
+++ ++.+++.|+|++.+|+... +++|..||++++|+++.+++|+|. + .++|++|++|+.+.|+
T Consensus 297 ~~~-~~~~~~~f~a~i~vl~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~-l------------~~~~~~l~~g~~a~v~ 362 (396)
T PRK00049 297 KPG-SITPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGVIE-L------------PEGVEMVMPGDNVEMT 362 (396)
T ss_pred cCC-CCCcceEEEEEEEEEecCcCCCCCcccCCCEEEEEEecCcEEEEEE-e------------cCCCcccCCCCEEEEE
Confidence 987 4556799999999976321 368999999999999999999983 2 2357889999999999
Q ss_pred EEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecC
Q 010278 470 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 508 (514)
Q Consensus 470 ~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~ 508 (514)
|+|++|+|++++ |||+||+.|+|+|+|+|+++.
T Consensus 363 i~~~~p~~~e~~------~RfilR~~g~t~~~G~V~~v~ 395 (396)
T PRK00049 363 VELIAPIAMEEG------LRFAIREGGRTVGAGVVTKII 395 (396)
T ss_pred EEECceEEEeeC------CEEEEecCCcEEEEEEEEEec
Confidence 999999999985 799999999999999999875
No 16
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.1e-65 Score=533.50 Aligned_cols=377 Identities=30% Similarity=0.461 Sum_probs=328.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
..++++||+++||+|||||||+++|+...+ +.|+.++...+.+|..++|+++|+|++.....|++
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~ 72 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLA---------------ERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET 72 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhh---------------hhccccccchhhhcCCHHHHhcCccEEEEeeEecC
Confidence 467889999999999999999999974322 12444444445799999999999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
+++.++|||||||++|+++++++++.+|++|||||+.+|.. +||++|+.++..+|+|++||++||||+ ++
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~-------~~t~~~~~~~~~~g~~~~IvviNK~D~--~~- 142 (394)
T PRK12736 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-------PQTREHILLARQVGVPYLVVFLNKVDL--VD- 142 (394)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-------hhHHHHHHHHHHcCCCEEEEEEEecCC--cc-
Confidence 99999999999999999999999999999999999999854 799999999999999988899999998 43
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCc-ccHHHHhhh-ccCCCCCCCCCceEE
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRMP 316 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g-~tL~~~l~~-l~~~~~~~~~p~~~~ 316 (514)
+++.++.+.+++..+|+..++.. ..+|++|+||++|.+- ..+||.+ ++|++.|+. ++.|.++.++||+++
T Consensus 143 ~~~~~~~i~~~i~~~l~~~~~~~-~~~~ii~vSa~~g~~~-------~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~ 214 (394)
T PRK12736 143 DEELLELVEMEVRELLSEYDFPG-DDIPVIRGSALKALEG-------DPKWEDAIMELMDAVDEYIPTPERDTDKPFLMP 214 (394)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCc-CCccEEEeeccccccC-------CCcchhhHHHHHHHHHHhCCCCCCCCCCCeEEE
Confidence 34567778889999999998853 3579999999999542 1479864 788887776 576777888999999
Q ss_pred EEEEE--ccCCeEEEEEEeeeeeecCCEEEEecC--CcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEc
Q 010278 317 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 392 (514)
Q Consensus 317 i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~--~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~ 392 (514)
|+++| ++.|+|++|+|.+|+|++||.|+++|. +..++|++|+++++++++|.|||+|+++|++++..++++|++||
T Consensus 215 I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~ 294 (394)
T PRK12736 215 VEDVFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLA 294 (394)
T ss_pred EEEEEecCCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEECCEEccEECCCCEEEEEECCCcHHhCCcceEEe
Confidence 99999 689999999999999999999999997 67899999999999999999999999999999989999999999
Q ss_pred cCCCCccceeEEEEEEEEecccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEE
Q 010278 393 SVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 469 (514)
Q Consensus 393 ~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~ 469 (514)
+++. +.++++|+|++.+|+... .++|..||++++|+|+.++.|+|.. .++|.+|++|+.+.|+
T Consensus 295 ~~~~-~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~-------------~~~~~~l~~g~~a~v~ 360 (394)
T PRK12736 295 KPGS-IKPHTKFKAEVYILTKEEGGRHTPFFNNYRPQFYFRTTDVTGSIEL-------------PEGTEMVMPGDNVTIT 360 (394)
T ss_pred cCCC-CCcceEEEEEEEEEecccCCCCCcccCCceEEEEEccCeEEEEEEe-------------cCCcceeCCCCEEEEE
Confidence 9874 456799999999975321 2679999999999999999999742 2356789999999999
Q ss_pred EEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecC
Q 010278 470 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 508 (514)
Q Consensus 470 ~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~ 508 (514)
|+|++|+|++++ +||+||+.|+|+|+|+|+++.
T Consensus 361 l~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~ 393 (394)
T PRK12736 361 VELIHPIAMEQG------LKFAIREGGRTVGAGTVTEIL 393 (394)
T ss_pred EEECceEEEeeC------CEEEEecCCcEEEEEEEEEee
Confidence 999999999985 799999999999999999874
No 17
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=5.7e-65 Score=528.99 Aligned_cols=377 Identities=30% Similarity=0.457 Sum_probs=328.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
..+++++|+++||+|||||||+++|++... ..|+.++...+.+|..++|+++|+|++.....+++
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~ 72 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLA---------------KEGGAAARAYDQIDNAPEEKARGITINTAHVEYET 72 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHH---------------HhhcccccccccccCCHHHHhcCcceeeEEEEEcC
Confidence 467889999999999999999999975421 23444454557899999999999999999999998
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
++++++|||||||++|+++++++++.+|++|||||+.+|.. +||++|+.++..+++|++|+|+||||+ .++
T Consensus 73 ~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~-------~qt~e~l~~~~~~gi~~iIvvvNK~Dl--~~~ 143 (394)
T TIGR00485 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPM-------PQTREHILLARQVGVPYIVVFLNKCDM--VDD 143 (394)
T ss_pred CCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCEEEEEEEeccc--CCH
Confidence 89999999999999999999999999999999999999854 799999999999999977789999999 442
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCC-cccHHHHhhhc-cCCCCCCCCCceEE
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN-GPCLFEALDRI-EITPRDPNGPFRMP 316 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~-g~tL~~~l~~l-~~~~~~~~~p~~~~ 316 (514)
++.++.+.+++..+|+.+++.. .++|++|+||++|.+- ..+||. +++|++.|+.+ +.|.++.++||+++
T Consensus 144 -~~~~~~~~~~i~~~l~~~~~~~-~~~~ii~vSa~~g~~g-------~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~ 214 (394)
T TIGR00485 144 -EELLELVEMEVRELLSEYDFPG-DDTPIIRGSALKALEG-------DAEWEAKILELMDAVDEYIPTPERETDKPFLMP 214 (394)
T ss_pred -HHHHHHHHHHHHHHHHhcCCCc-cCccEEECcccccccc-------CCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEE
Confidence 3467777888999999988752 3589999999998642 246997 48888888764 56777788999999
Q ss_pred EEEEE--ccCCeEEEEEEeeeeeecCCEEEEecC--CcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEc
Q 010278 317 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 392 (514)
Q Consensus 317 i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~--~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~ 392 (514)
|+++| ++.|+|++|+|.+|+|++||+|.++|. +..++|++|++++.++++|.|||+|+++|++++..++++|++|+
T Consensus 215 V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~ 294 (394)
T TIGR00485 215 IEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLA 294 (394)
T ss_pred EEEEEeeCCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEECCeEEEEECCCCEEEEEeCCccHHHCCccEEEe
Confidence 99999 689999999999999999999999984 57899999999999999999999999999999888999999999
Q ss_pred cCCCCccceeEEEEEEEEecccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEE
Q 010278 393 SVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 469 (514)
Q Consensus 393 ~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~ 469 (514)
+++ ++.++++|+|++.||+... +.+|..||++++|+++.++.|+|.. .++|.+|++|+.+.|+
T Consensus 295 ~~~-~~~~~~~f~a~i~vl~~~~g~~~~~i~~g~~~~l~~~t~~~~~~i~~-------------~~~~~~l~~g~~a~v~ 360 (394)
T TIGR00485 295 KPG-SIKPHTKFEAEVYVLKKEEGGRHTPFFSGYRPQFYFRTTDVTGSITL-------------PEGVEMVMPGDNVKMT 360 (394)
T ss_pred cCC-CCCcceEEEEEEEEEecCCCCCCCccccCceEEEEEecceEEEEEEe-------------cCCcceeCCCCEEEEE
Confidence 986 4556799999999975321 3689999999999999999999872 1347789999999999
Q ss_pred EEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecC
Q 010278 470 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 508 (514)
Q Consensus 470 ~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~ 508 (514)
|+|++|+|++++ +||+||+.|+|+|+|+|+++.
T Consensus 361 ~~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~ 393 (394)
T TIGR00485 361 VELISPIALEQG------MRFAIREGGRTVGAGVVSKII 393 (394)
T ss_pred EEECceEEEeEC------CEEEEecCCcEEEEEEEEEec
Confidence 999999999985 799999999999999999875
No 18
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=1.5e-64 Score=529.46 Aligned_cols=376 Identities=28% Similarity=0.449 Sum_probs=323.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhh-hccCchhhhhcccEEEeeeEEEE
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAY-IMDTNEEERIKGKTVEVGRAHFE 157 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~-~~d~~~~e~~~giT~~~~~~~~~ 157 (514)
..++++||+++||+|||||||+++|.... .+.|+.. ...| .+|..++|+++|+|++.+...|+
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~---------------~~~g~~~-~~~~~~~D~~~~E~~rGiTi~~~~~~~~ 120 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAK-AVAFDEIDKAPEEKARGITIATAHVEYE 120 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHH---------------HHhhccc-ceeeccccCChhHhhcCceeeeeEEEEc
Confidence 46889999999999999999999994321 1123321 2222 68999999999999999999999
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010278 158 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 158 ~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~ 237 (514)
+++++|+|+|||||++|++++++++..+|+++|||||.+|.+ +||++|+.++..+|+|++|+++||||+ ++
T Consensus 121 ~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~-------~qt~e~l~~~~~~gip~iIvviNKiDl--v~ 191 (447)
T PLN03127 121 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-------PQTKEHILLARQVGVPSLVVFLNKVDV--VD 191 (447)
T ss_pred CCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCc-------hhHHHHHHHHHHcCCCeEEEEEEeecc--CC
Confidence 999999999999999999999999999999999999999854 799999999999999977899999999 54
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccc---cccccccccCCCCCCCcccHHHHhhh-ccCCCCCCCCCc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG---LNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRDPNGPF 313 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G---~gi~~l~~~~~~~w~~g~tL~~~l~~-l~~~~~~~~~p~ 313 (514)
.+..++.+.+++..+++.+++. ...+|++|+||+++ .|+. ..|..+++|++.|+. ++.|.+..++||
T Consensus 192 -~~~~~~~i~~~i~~~l~~~~~~-~~~vpiip~Sa~sa~~g~n~~-------~~~~~i~~Ll~~l~~~lp~p~r~~~~pf 262 (447)
T PLN03127 192 -DEELLELVEMELRELLSFYKFP-GDEIPIIRGSALSALQGTNDE-------IGKNAILKLMDAVDEYIPEPVRVLDKPF 262 (447)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCC-CCcceEEEeccceeecCCCcc-------cccchHHHHHHHHHHhCCCCCcccccce
Confidence 3446677777888888888875 24689999998754 4422 346677888888876 566777888999
Q ss_pred eEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecC----CcEEEEEEEEECCeeeeecCCCCeEEEEccCCCccccee
Q 010278 314 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN----KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILS 387 (514)
Q Consensus 314 ~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~----~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~ 387 (514)
+|+|+++| +|.|+|++|+|.+|.|++||.|+++|. +..++|++|+++++++++|.|||+|+++|++++..++++
T Consensus 263 r~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~r 342 (447)
T PLN03127 263 LMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDVQR 342 (447)
T ss_pred EeeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEECcEeCEEcCCCEEEEEeCCCCHHHCCC
Confidence 99999999 589999999999999999999999865 468999999999999999999999999999999999999
Q ss_pred eeEEccCCCCccceeEEEEEEEEecccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCC
Q 010278 388 GFVLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGA 464 (514)
Q Consensus 388 G~vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~ 464 (514)
|||||+++ ++..+++|+|++.+|+... +++|..||++++|+++.+++|+|.. .++|.+|++|+
T Consensus 343 G~Vl~~~~-~~~~~~~F~A~i~vl~~~~gg~~~~i~~g~~~~~~~~t~~~~~~i~~-------------~~~~~~l~~gd 408 (447)
T PLN03127 343 GQVICKPG-SIKTYKKFEAEIYVLTKDEGGRHTPFFSNYRPQFYLRTADVTGKVEL-------------PEGVKMVMPGD 408 (447)
T ss_pred ccEEecCC-CCceeEEEEEEEEEEcccccccCcccccCceeEEEeeecceeEEEEe-------------ccCccccCCCC
Confidence 99999985 5678999999999976321 3689999999999999999999852 23578899999
Q ss_pred EEEEEEEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecC
Q 010278 465 IVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 508 (514)
Q Consensus 465 ~a~v~~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~ 508 (514)
.+.|+|+|.+|+|++++ +||+||+.|+|+|+|+|+++.
T Consensus 409 ~a~v~l~~~~p~~le~g------~RfilR~~g~Tvg~G~V~~v~ 446 (447)
T PLN03127 409 NVTAVFELISPVPLEPG------QRFALREGGRTVGAGVVSKVL 446 (447)
T ss_pred EEEEEEEECceEEEeeC------CEEEEEeCCcEEEEEEEEEec
Confidence 99999999999999974 899999999999999999874
No 19
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-61 Score=451.27 Aligned_cols=377 Identities=31% Similarity=0.476 Sum_probs=321.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
..+++.||+.+||+|||||||..+|...+.. .|..++..-.-.|..++|++|||||+.++..+++
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~---------------~~~~~~~~y~~id~aPeEk~rGITIntahveyet 72 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAK---------------KGGAEAKAYDQIDNAPEEKARGITINTAHVEYET 72 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHh---------------hccccccchhhhccCchHhhcCceeccceeEEec
Confidence 5789999999999999999999988332211 1111111111257788999999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
.++.+..+|+|||.+|++||+.|+.+.|++||||+|.+|.| +||+||+.++++.|+|++|+++||+|+ ++
T Consensus 73 ~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpm-------PqTrEHiLlarqvGvp~ivvflnK~Dm--vd- 142 (394)
T COG0050 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-------PQTREHILLARQVGVPYIVVFLNKVDM--VD- 142 (394)
T ss_pred CCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCC-------CcchhhhhhhhhcCCcEEEEEEecccc--cC-
Confidence 99999999999999999999999999999999999999987 799999999999999999999999999 65
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCc-ccHHHHhhh-ccCCCCCCCCCceEE
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRMP 316 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g-~tL~~~l~~-l~~~~~~~~~p~~~~ 316 (514)
+++..+.+..+++.+|..++|. ..+.|++--||+....-. .+|..- .-|+++++. ++.|.++.++||+++
T Consensus 143 d~ellelVemEvreLLs~y~f~-gd~~Pii~gSal~ale~~-------~~~~~~i~eLm~avd~yip~Per~~dkPflmp 214 (394)
T COG0050 143 DEELLELVEMEVRELLSEYGFP-GDDTPIIRGSALKALEGD-------AKWEAKIEELMDAVDSYIPTPERDIDKPFLMP 214 (394)
T ss_pred cHHHHHHHHHHHHHHHHHcCCC-CCCcceeechhhhhhcCC-------cchHHHHHHHHHHHHhcCCCCCCccccccccc
Confidence 6788999999999999999997 457899888886543211 124321 236666665 788999999999999
Q ss_pred EEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCC--cEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEc
Q 010278 317 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 392 (514)
Q Consensus 317 i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~--~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~ 392 (514)
|.++| .|+|+|++|||.+|+|++|+.+.+.... ++..|.+++++++.++++.||++|++.|+|+...++.||++|+
T Consensus 215 vEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~r~~veRGqvLa 294 (394)
T COG0050 215 VEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLA 294 (394)
T ss_pred ceeeEEEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhHHHHHHHHhccccCCCcceEEEeccccceecceEee
Confidence 99999 5999999999999999999999987654 5678999999999999999999999999999999999999999
Q ss_pred cCCCCccceeEEEEEEEEeccc---ccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEE
Q 010278 393 SVAKPVAAVTEFIAQLQILELL---DNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 469 (514)
Q Consensus 393 ~~~~~~~~~~~f~a~i~~~~~~---~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~ 469 (514)
.|+ ...+.++|+|++++|..- .|+++-.||.|.+++++..+++.+. + .+....+++|+.+.+.
T Consensus 295 kpg-si~ph~kfeaevyvL~keeggrhtpff~~yrpqfyfRttDVtg~i~-l------------~eg~emvmpgdnv~~~ 360 (394)
T COG0050 295 KPG-SIKPHTKFEAEVYVLSKEEGGRHTPFFHGYRPQFYFRTTDVTGAIT-L------------PEGVEMVMPGDNVKMV 360 (394)
T ss_pred cCC-cccccceeeEEEEEEecccCCCCCCcccCccceeEEEeeeeeeeEe-c------------cCCcceecCCCceEEE
Confidence 998 467789999999998632 2589999999999999998887544 1 1224569999999999
Q ss_pred EEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecC
Q 010278 470 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 508 (514)
Q Consensus 470 ~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~ 508 (514)
++|.+||++|.. .||.+|..|+|+|.|+|+++.
T Consensus 361 veLi~pia~e~G------~rFaIreGgrtvgaGvV~~i~ 393 (394)
T COG0050 361 VELIHPIAMEEG------LRFAIREGGRTVGAGVVTKII 393 (394)
T ss_pred EEEeeeeecCCC------CEEEEEeCCeeeeeeEEeeec
Confidence 999999999986 599999999999999999875
No 20
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.1e-62 Score=465.59 Aligned_cols=380 Identities=31% Similarity=0.458 Sum_probs=326.0
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEE
Q 010278 78 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 157 (514)
Q Consensus 78 ~~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~ 157 (514)
...+++.||+.+||+|||||||..++....- +.|...+.--.-.|.-++|+.|||||+..+..++
T Consensus 49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila---------------~~g~A~~~kydeID~APEEkaRGITIn~aHveYe 113 (449)
T KOG0460|consen 49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILA---------------EKGGAKFKKYDEIDKAPEEKARGITINAAHVEYE 113 (449)
T ss_pred ccCCCcccccccccccCCchhHHHHHHHHHH---------------hccccccccHhhhhcChhhhhccceEeeeeeeee
Confidence 3578999999999999999999988832211 1222222222246888999999999999999999
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010278 158 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 158 ~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~ 237 (514)
+..++|.-+|+|||.+|++||+.|+++.|++||||.|++|.| +||+||+.++++-|+++++|+|||.|+ ++
T Consensus 114 Ta~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~M-------PQTrEHlLLArQVGV~~ivvfiNKvD~--V~ 184 (449)
T KOG0460|consen 114 TAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPM-------PQTREHLLLARQVGVKHIVVFINKVDL--VD 184 (449)
T ss_pred ccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCC-------cchHHHHHHHHHcCCceEEEEEecccc--cC
Confidence 999999999999999999999999999999999999999987 799999999999999999999999999 64
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCC--cccHHHHhhh-ccCCCCCCCCCce
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN--GPCLFEALDR-IEITPRDPNGPFR 314 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~--g~tL~~~l~~-l~~~~~~~~~p~~ 314 (514)
+++.++-+.-+++++|..+||+ ..+.|+|.-||+...-=.+. .... -.-|++++++ +|.|.++.++||.
T Consensus 185 -d~e~leLVEmE~RElLse~gf~-Gd~~PvI~GSAL~ALeg~~p------eig~~aI~kLldavDsyip~P~R~~~~pFl 256 (449)
T KOG0460|consen 185 -DPEMLELVEMEIRELLSEFGFD-GDNTPVIRGSALCALEGRQP------EIGLEAIEKLLDAVDSYIPTPERDLDKPFL 256 (449)
T ss_pred -CHHHHHHHHHHHHHHHHHcCCC-CCCCCeeecchhhhhcCCCc------cccHHHHHHHHHHHhccCCCcccccCCCce
Confidence 5678888888999999999998 66899998887653211110 0000 0126777776 8999999999999
Q ss_pred EEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCC--cEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeE
Q 010278 315 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 390 (514)
Q Consensus 315 ~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~--~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~v 390 (514)
++|.++| .|+|+|++|++++|+|+.|+++.+...+ ....|..|+++++.+++|.|||++++-|+|+...+++||||
T Consensus 257 ~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF~K~ld~a~AGDn~G~LlRGik~~dvkRGmv 336 (449)
T KOG0460|consen 257 LPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMFRKSLDEAQAGDNLGALLRGIKREDVKRGMV 336 (449)
T ss_pred eehhheeeecCCceEEEEEEeecccccCCEEEEeccCcceeeEeehHHHHHHHHHhcccccceehhhhcCCHHHHhcccE
Confidence 9999999 6999999999999999999999998766 56789999999999999999999999999999999999999
Q ss_pred EccCCCCccceeEEEEEEEEecccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEE
Q 010278 391 LSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVV 467 (514)
Q Consensus 391 l~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~ 467 (514)
++.|+. ..+.++|+|++++|+.-. |+++..+|.+.+++.|..+.|++.-.. +.+++++|+.+.
T Consensus 337 l~~pGs-vk~~~k~ea~~YiLsk~EGGR~~pf~s~y~~q~fs~TwD~~~~v~~~~-------------~~~mvMPGe~~~ 402 (449)
T KOG0460|consen 337 LAKPGS-VKPHNKFEAQLYILSKEEGGRHKPFVSGYRPQMFSRTWDVTGRVDIPP-------------EKEMVMPGENVK 402 (449)
T ss_pred EecCCc-ccccceeeEEEEEEEhhhCCCccchhhccchhheeeecccceEEEccC-------------hHhcccCCCCeE
Confidence 999995 788999999999986422 489999999999999999999987321 135799999999
Q ss_pred EEEEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecCC
Q 010278 468 CRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 509 (514)
Q Consensus 468 v~~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~~ 509 (514)
+++.|-+|+++++. .||.||+.|+|||.|+|+++.+
T Consensus 403 ~~~~Li~pm~le~G------qrFtiReGg~TvgtGvvt~~l~ 438 (449)
T KOG0460|consen 403 VEVTLIRPMPLEKG------QRFTLREGGRTVGTGVVTDTLP 438 (449)
T ss_pred EEEEEecccccCCC------ceeeEccCCeeeeeeeEeeeee
Confidence 99999999999986 6999999999999999998876
No 21
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=1.8e-56 Score=467.34 Aligned_cols=346 Identities=22% Similarity=0.379 Sum_probs=288.9
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
...+.++|+++||+|||||||+++|. |. .+|..++|.+||+|+++++.++.+
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLt---g~-------------------------~~~r~~~E~~rGiTi~lGfa~~~~ 81 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALS---GV-------------------------KTVRFKREKVRNITIKLGYANAKI 81 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHh---CC-------------------------CcccchhhHHhCCchhcccccccc
Confidence 35678999999999999999999993 22 235567899999999998876521
Q ss_pred ---------------C------------------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccC
Q 010278 159 ---------------E------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEK 205 (514)
Q Consensus 159 ---------------~------------------~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~ 205 (514)
. .+.++|+|||||++|+++|++|++.+|++||||||.+|. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~------~ 155 (460)
T PTZ00327 82 YKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESC------P 155 (460)
T ss_pred ccCcccCCcccccccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCc------c
Confidence 1 247999999999999999999999999999999999862 1
Q ss_pred CcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccC
Q 010278 206 GGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKS 285 (514)
Q Consensus 206 ~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~ 285 (514)
++||++|+.++..+|++++|||+||||+... +.+++..+++..+++.... ...++||+||++|.|++.
T Consensus 156 ~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~----~~~~~~~~ei~~~l~~~~~---~~~~iipVSA~~G~nI~~----- 223 (460)
T PTZ00327 156 QPQTSEHLAAVEIMKLKHIIILQNKIDLVKE----AQAQDQYEEIRNFVKGTIA---DNAPIIPISAQLKYNIDV----- 223 (460)
T ss_pred chhhHHHHHHHHHcCCCcEEEEEecccccCH----HHHHHHHHHHHHHHHhhcc---CCCeEEEeeCCCCCCHHH-----
Confidence 3799999999999999989999999999432 3445555566666655432 257999999999999976
Q ss_pred CCCCCCcccHHHHhh-hccCCCCCCCCCceEEEEEEE--cc--------CCeEEEEEEeeeeeecCCEEEEecCC-----
Q 010278 286 LCPWWNGPCLFEALD-RIEITPRDPNGPFRMPIIDKF--KD--------MGTVVMGKVESGSVREGDSLLVMPNK----- 349 (514)
Q Consensus 286 ~~~w~~g~tL~~~l~-~l~~~~~~~~~p~~~~i~~~~--~~--------~G~v~~g~v~sG~l~~gd~v~~~p~~----- 349 (514)
|++.|+ .++.|.++.+.||+++|+++| ++ +|+|++|+|.+|+|++||+|.++|++
T Consensus 224 ---------Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~ 294 (460)
T PTZ00327 224 ---------VLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDS 294 (460)
T ss_pred ---------HHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccc
Confidence 667776 677777888899999999887 22 69999999999999999999999975
Q ss_pred --------cEEEEEEEEECCeeeeecCCCCeEEEEcc---CCCcccceeeeEEccCCCCccceeEEEEEEEEeccc----
Q 010278 350 --------AQVKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL---- 414 (514)
Q Consensus 350 --------~~~~V~si~~~~~~v~~a~aG~~v~~~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~---- 414 (514)
..++|++|++++.++++|.||++|+++|+ +++..++.|||||++++..++.++.|+|++.||+..
T Consensus 295 ~g~~~~~~~~~~VksI~~~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~~~~~~~~~~a~v~~L~~~~~~~ 374 (460)
T PTZ00327 295 GGEFTCRPIRTRIVSLFAENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPGKLPEVYAEIEIQYYLLRRLLGVK 374 (460)
T ss_pred cCccccccceEEEEEEEECCeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCCCCCceeEEEEEEEEEeccccccc
Confidence 36799999999999999999999999987 788889999999999987777888999999997542
Q ss_pred -------c-cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcceEEeeecccccc
Q 010278 415 -------D-NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQ 486 (514)
Q Consensus 415 -------~-~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~pi~~e~~~~~~~ 486 (514)
. ..+|+.||++.+|+++.++.|+|..|. . +. .++|+|++|+|+...
T Consensus 375 ~~~~~~~~~~~~l~~g~~~~l~~gt~~~~~~i~~i~----~----------------~~-~~~l~l~~P~~~~~g----- 428 (460)
T PTZ00327 375 SQDGKKATKVAKLKKGESLMINIGSTTTGGRVVGIK----D----------------DG-IAKLELTTPVCTSVG----- 428 (460)
T ss_pred ccccccccCCcccCCCCEEEEEecccEEEEEEEEeC----C----------------Ce-EEEEEECccEeccCC-----
Confidence 0 168999999999999999999999652 1 00 678999999998875
Q ss_pred cceEEEEeC----CeEEEEEEEEe
Q 010278 487 LGRFTLRTE----GKTVAVGKVTE 506 (514)
Q Consensus 487 lgrfilr~~----g~tva~G~I~~ 506 (514)
.||+||+. .+|+|+|.|..
T Consensus 429 -dr~ilr~~~~~~~~tig~G~i~~ 451 (460)
T PTZ00327 429 -EKIALSRRVDKHWRLIGWGTIRK 451 (460)
T ss_pred -CEEEEEeccCCCcEEEEEEEEcC
Confidence 59999974 48999999974
No 22
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=3.6e-54 Score=466.40 Aligned_cols=339 Identities=25% Similarity=0.385 Sum_probs=292.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe-CCeE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETTR 162 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~-~~~~ 162 (514)
+.|+++||+|||||||+++|. |. -+|..++|+++|+|++.++..+.. ++..
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLt---g~-------------------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~ 52 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAIT---GV-------------------------NADRLPEEKKRGMTIDLGYAYWPQPDGRV 52 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CC-------------------------CCccchhcccCCceEEeeeEEEecCCCcE
Confidence 368999999999999999993 21 145666888999999999888866 4578
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHH
Q 010278 163 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 242 (514)
Q Consensus 163 i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~ 242 (514)
++|||||||++|+++|++++..+|+++||||+++|++ +||++|+.++..+|++++|||+||||+ ++ +++
T Consensus 53 i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~-------~qT~ehl~il~~lgi~~iIVVlNKiDl--v~--~~~ 121 (614)
T PRK10512 53 LGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVM-------AQTREHLAILQLTGNPMLTVALTKADR--VD--EAR 121 (614)
T ss_pred EEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEECCcc--CC--HHH
Confidence 9999999999999999999999999999999999965 799999999999999977899999999 42 456
Q ss_pred HHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEEEEEEE-
Q 010278 243 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF- 321 (514)
Q Consensus 243 ~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~i~~~~- 321 (514)
++.+.+++..+++..++. ..++||+||++|.|+++ |.+.|..++.+.+..++||+++|+++|
T Consensus 122 ~~~v~~ei~~~l~~~~~~---~~~ii~VSA~tG~gI~~--------------L~~~L~~~~~~~~~~~~~~rl~Id~vf~ 184 (614)
T PRK10512 122 IAEVRRQVKAVLREYGFA---EAKLFVTAATEGRGIDA--------------LREHLLQLPEREHAAQHRFRLAIDRAFT 184 (614)
T ss_pred HHHHHHHHHHHHHhcCCC---CCcEEEEeCCCCCCCHH--------------HHHHHHHhhccccCcCCCceEEEEEEec
Confidence 778888888888887764 57899999999999987 566666666666667899999999999
Q ss_pred -ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccC-CCcccceeeeEEccCCCCcc
Q 010278 322 -KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSG-IEEEDILSGFVLSSVAKPVA 399 (514)
Q Consensus 322 -~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~-~~~~~i~~G~vl~~~~~~~~ 399 (514)
+|.|+|++|+|.+|+|++||+|.++|.+..++|++|++++.++++|.||++|+++|+| ++..++++||+|++++ ++.
T Consensus 185 v~G~GtVvtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~-~~~ 263 (614)
T PRK10512 185 VKGAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADA-PPE 263 (614)
T ss_pred cCCCeEEEEEEEecceEecCCEEEEcCCCCcEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCC-CCc
Confidence 6899999999999999999999999999999999999999999999999999999997 8889999999999875 455
Q ss_pred ceeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcceEEee
Q 010278 400 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 479 (514)
Q Consensus 400 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~pi~~e 479 (514)
++..+.+ ++.. ..+++.|+++.+|+++.++.|+|..+ +.+.+++.|++|+++.
T Consensus 264 ~~~~~~~---~l~~--~~~l~~~~~~~~~~gt~~~~~~i~~l----------------------~~~~~~l~l~~p~~~~ 316 (614)
T PRK10512 264 PFTRVIV---ELQT--HTPLTQWQPLHIHHAASHVTGRVSLL----------------------EDNLAELVLDTPLWLA 316 (614)
T ss_pred cceeEEE---EEcC--CccCCCCCEEEEEEcccEEEEEEEEc----------------------CCeEEEEEECCccccc
Confidence 5555543 3221 26789999999999999999999854 1257999999999987
Q ss_pred ecccccccceEEEEe--CCeEEEEEEEEecCCCCC
Q 010278 480 KFADFAQLGRFTLRT--EGKTVAVGKVTELPTVSS 512 (514)
Q Consensus 480 ~~~~~~~lgrfilr~--~g~tva~G~I~~v~~~~~ 512 (514)
.. .||+||+ ..+|+|+|.|+.+.++..
T Consensus 317 ~g------dr~ilr~~s~~~tigGg~Vld~~~~~~ 345 (614)
T PRK10512 317 DN------DRLVLRDISARNTLAGARVVMLNPPRR 345 (614)
T ss_pred CC------CEEEEEeCCCCEEEEEEEEcccCCccc
Confidence 65 6999999 469999999999876654
No 23
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=100.00 E-value=4.4e-54 Score=417.65 Aligned_cols=360 Identities=30% Similarity=0.462 Sum_probs=303.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEE--
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-- 157 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~-- 157 (514)
...+++|+++||+|||||||+++| .+|..+++. |. ....+|..++|-++|.|.+++..-+-
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~L--vtG~~DDG~-----------G~----tR~~ldv~kHEverGlsa~iS~~v~Gf~ 176 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVL--VTGRLDDGD-----------GA----TRSYLDVQKHEVERGLSADISLRVYGFD 176 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEE--EecCCCCCC-----------cc----hhhhhhhhhHHHhhccccceeEEEEEec
Confidence 567899999999999999999999 678877642 10 11123444555556665555443322
Q ss_pred ---------------------eCCeEEEEEeCCCCcchHHHHHHhh--hhcCEEEEEEECCCCcccccccCCcchHHHHH
Q 010278 158 ---------------------TETTRFTILDAPGHKSYVPNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVM 214 (514)
Q Consensus 158 ---------------------~~~~~i~liDtPGh~~f~~~~~~g~--~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~ 214 (514)
..++.+.|+||-||+.|++++++|+ +..|+.+|||.|++|++ ..|+||+.
T Consensus 177 dgk~~rlknPld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~-------~~tkEHLg 249 (527)
T COG5258 177 DGKVVRLKNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT-------KMTKEHLG 249 (527)
T ss_pred CCceEeecCcccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc-------hhhhHhhh
Confidence 2346799999999999999999998 58999999999999965 69999999
Q ss_pred HHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcc-------------------cCCeeEEeeccccc
Q 010278 215 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV-------------------KKDVQFLPISGLMG 275 (514)
Q Consensus 215 ~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~-------------------~~~~~iipiSa~~G 275 (514)
++.++++| +|||++|+|+ + +.++++.+.+++..+|+..+--+ ..-+|++.+|+.+|
T Consensus 250 i~~a~~lP-viVvvTK~D~--~--~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg 324 (527)
T COG5258 250 IALAMELP-VIVVVTKIDM--V--PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTG 324 (527)
T ss_pred hhhhhcCC-EEEEEEeccc--C--cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccC
Confidence 99999999 9999999999 4 46799999999999998765211 12479999999999
Q ss_pred cccccccccCCCCCCCcccHHHHhhhccCCCC-CCCCCceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCC---
Q 010278 276 LNMKTRVDKSLCPWWNGPCLFEALDRIEITPR-DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--- 349 (514)
Q Consensus 276 ~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~-~~~~p~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~--- 349 (514)
+|++- |.+++..+|...+ +..+||.|+|+++| +|.|+|+.|.|.+|.|+.||+++++|..
T Consensus 325 ~Gldl--------------L~e~f~~Lp~rr~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~ 390 (527)
T COG5258 325 EGLDL--------------LDEFFLLLPKRRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGK 390 (527)
T ss_pred ccHHH--------------HHHHHHhCCcccccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCc
Confidence 99975 5566667766533 56789999999999 6999999999999999999999999975
Q ss_pred -cEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEccCCCCccceeEEEEEEEEeccccc-ccccCCcEEEE
Q 010278 350 -AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVL 427 (514)
Q Consensus 350 -~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~ 427 (514)
..++|+||++|+-++++|.||.+++++|+|+....+++||||+.+ .+|.++++|.|++++ ++| +.|+.||.+++
T Consensus 391 fr~v~vkSIemh~~rvdsa~aG~iig~Al~gv~~e~lerGMVl~~~-~~pkaVref~AeV~v---l~HPT~I~aGye~v~ 466 (527)
T COG5258 391 FREVVVKSIEMHHYRVDSAKAGSIIGIALKGVEKEELERGMVLSAG-ADPKAVREFDAEVLV---LRHPTTIRAGYEPVF 466 (527)
T ss_pred EEEEEEEEEEEeeEEeccccCCcEEEEEecccCHHHHhcceEecCC-CCchhhheecceEEE---EeCCcEEecCceeee
Confidence 678999999999999999999999999999999999999999987 678999999999999 667 88999999999
Q ss_pred EEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEc-ceEEeeecccccccceEEEEeCCeEEEEEEEEe
Q 010278 428 HIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVN-NSICTEKFADFAQLGRFTLRTEGKTVAVGKVTE 506 (514)
Q Consensus 428 ~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~-~pi~~e~~~~~~~lgrfilr~~g~tva~G~I~~ 506 (514)
|+.+.++++++..| |+ .+|++||.+.++++|. +|..++.. .+|++ ++|++.|+|.|++
T Consensus 467 H~etI~e~~~f~~i----d~----------~~L~~GD~g~vr~~fkyrP~~v~eG------Q~fvF-ReGrskgvG~v~~ 525 (527)
T COG5258 467 HYETIREAVYFEEI----DK----------GFLMPGDRGVVRMRFKYRPHHVEEG------QKFVF-REGRSKGVGRVIR 525 (527)
T ss_pred EeeEeeheeEEEEc----cc----------ccccCCCcceEEEEEEeCchhhccC------cEEEE-ecCCCccceEEec
Confidence 99999999998865 32 3699999999999997 89888763 36655 5899999999997
Q ss_pred c
Q 010278 507 L 507 (514)
Q Consensus 507 v 507 (514)
+
T Consensus 526 ~ 526 (527)
T COG5258 526 V 526 (527)
T ss_pred c
Confidence 5
No 24
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=5.2e-52 Score=432.50 Aligned_cols=344 Identities=25% Similarity=0.419 Sum_probs=282.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
..+++++|+++||+|||||||+++|. + ..+|..++|+++|+|++.++..+.+
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~---~-------------------------~~~d~~~~E~~rg~Ti~~~~~~~~~ 56 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALT---G-------------------------VWTDRHSEELKRGITIRLGYADATI 56 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhh---C-------------------------eecccCHhHHhcCcEEEeccccccc
Confidence 45678999999999999999999982 1 1267778999999999988654333
Q ss_pred C--------------------------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHH
Q 010278 159 E--------------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH 212 (514)
Q Consensus 159 ~--------------------------~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~ 212 (514)
. .+.++|+|||||++|+.+++++++.+|++|+|||+.++.. ..|+.++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~------~~~t~~~ 130 (411)
T PRK04000 57 RKCPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCP------QPQTKEH 130 (411)
T ss_pred ccccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCC------ChhHHHH
Confidence 1 3689999999999999999999999999999999998741 3699999
Q ss_pred HHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCc
Q 010278 213 VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG 292 (514)
Q Consensus 213 l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g 292 (514)
+..+..++++++++|+||+|+...+ ......+++..+++.... ..++++|+||++|.|+.+
T Consensus 131 l~~l~~~~i~~iiVVlNK~Dl~~~~----~~~~~~~~i~~~l~~~~~---~~~~ii~vSA~~g~gI~~------------ 191 (411)
T PRK04000 131 LMALDIIGIKNIVIVQNKIDLVSKE----RALENYEQIKEFVKGTVA---ENAPIIPVSALHKVNIDA------------ 191 (411)
T ss_pred HHHHHHcCCCcEEEEEEeeccccch----hHHHHHHHHHHHhccccC---CCCeEEEEECCCCcCHHH------------
Confidence 9999999987799999999994322 222333444444543221 247899999999999987
Q ss_pred ccHHHHhhh-ccCCCCCCCCCceEEEEEEE--cc--------CCeEEEEEEeeeeeecCCEEEEecCCc-----------
Q 010278 293 PCLFEALDR-IEITPRDPNGPFRMPIIDKF--KD--------MGTVVMGKVESGSVREGDSLLVMPNKA----------- 350 (514)
Q Consensus 293 ~tL~~~l~~-l~~~~~~~~~p~~~~i~~~~--~~--------~G~v~~g~v~sG~l~~gd~v~~~p~~~----------- 350 (514)
|++.|.. ++.+.++.++||+++|+++| ++ +|+|++|+|.+|+|++||.|.++|++.
T Consensus 192 --L~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~ 269 (411)
T PRK04000 192 --LIEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEP 269 (411)
T ss_pred --HHHHHHHhCCCCCCCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceeccccccccc
Confidence 4555544 56677777899999999998 23 577999999999999999999999863
Q ss_pred -EEEEEEEEECCeeeeecCCCCeEEEEcc---CCCcccceeeeEEccCCCCccceeEEEEEEEEeccc-------ccccc
Q 010278 351 -QVKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL-------DNAIF 419 (514)
Q Consensus 351 -~~~V~si~~~~~~v~~a~aG~~v~~~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~-------~~~~i 419 (514)
.++|++|++++.++++|.||++|+++|+ +++..++++||||++++.+++.+++|+|++.||+.. ...+|
T Consensus 270 ~~~~VksI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~i 349 (411)
T PRK04000 270 ITTKIVSLRAGGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEPI 349 (411)
T ss_pred ceEEEeEEEECCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCCC
Confidence 5799999999999999999999999986 777889999999999998888899999999996531 03589
Q ss_pred cCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcceEEeeecccccccceEEE--EeCC-
Q 010278 420 TAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTL--RTEG- 496 (514)
Q Consensus 420 ~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~pi~~e~~~~~~~lgrfil--r~~g- 496 (514)
.+||++.+|+++.+++|+|..|. ++ .++++|.+|+|+.+. .||+| |..+
T Consensus 350 ~~g~~~~l~~~t~~~~~~i~~i~--------------------~~--~~~~~l~~p~~~~~g------~r~~~~~~~~~~ 401 (411)
T PRK04000 350 KTGEPLMLNVGTATTVGVVTSAR--------------------KD--EAEVKLKRPVCAEEG------DRVAISRRVGGR 401 (411)
T ss_pred CCCCEEEEEEeccEEEEEEEEcC--------------------Cc--EEEEEECCcEecCCC------CEEEEEEecCCc
Confidence 99999999999999999999652 12 577889999998875 69999 5667
Q ss_pred -eEEEEEEEE
Q 010278 497 -KTVAVGKVT 505 (514)
Q Consensus 497 -~tva~G~I~ 505 (514)
+++|.|.|.
T Consensus 402 ~~~~~~~~~~ 411 (411)
T PRK04000 402 WRLIGYGIIK 411 (411)
T ss_pred EEEEEEEEeC
Confidence 899999873
No 25
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=5.6e-52 Score=432.60 Aligned_cols=341 Identities=24% Similarity=0.407 Sum_probs=280.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe--
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-- 158 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~-- 158 (514)
++.++|+++||+|||||||+++|. +. .+|..++|+++|+|++.++..+.+
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt---~~-------------------------~~d~~~~e~~rg~Ti~~~~~~~~~~~ 53 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALT---GV-------------------------WTDTHSEELKRGISIRLGYADAEIYK 53 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHh---Ce-------------------------ecccCHhHHHcCceeEeccccccccc
Confidence 467899999999999999999992 11 256777899999999998665431
Q ss_pred ------------------------CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHH
Q 010278 159 ------------------------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 214 (514)
Q Consensus 159 ------------------------~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~ 214 (514)
..+.++|+|||||++|.++++++++.+|++||||||.+|.. ..|+++|+.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~------~~qt~e~l~ 127 (406)
T TIGR03680 54 CPECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCP------QPQTKEHLM 127 (406)
T ss_pred ccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCcc------ccchHHHHH
Confidence 14689999999999999999999999999999999999851 369999999
Q ss_pred HHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCccc
Q 010278 215 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPC 294 (514)
Q Consensus 215 ~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~t 294 (514)
++..++++++||++||+|+...++. .+..+++..+++.... ..++++|+||++|+|+.+
T Consensus 128 ~l~~~gi~~iIVvvNK~Dl~~~~~~----~~~~~~i~~~l~~~~~---~~~~ii~vSA~~g~gi~~-------------- 186 (406)
T TIGR03680 128 ALEIIGIKNIVIVQNKIDLVSKEKA----LENYEEIKEFVKGTVA---ENAPIIPVSALHNANIDA-------------- 186 (406)
T ss_pred HHHHcCCCeEEEEEEccccCCHHHH----HHHHHHHHhhhhhccc---CCCeEEEEECCCCCChHH--------------
Confidence 9999999889999999999432222 2233444444544321 257999999999999986
Q ss_pred HHHHhhh-ccCCCCCCCCCceEEEEEEE--cc--------CCeEEEEEEeeeeeecCCEEEEecCC------------cE
Q 010278 295 LFEALDR-IEITPRDPNGPFRMPIIDKF--KD--------MGTVVMGKVESGSVREGDSLLVMPNK------------AQ 351 (514)
Q Consensus 295 L~~~l~~-l~~~~~~~~~p~~~~i~~~~--~~--------~G~v~~g~v~sG~l~~gd~v~~~p~~------------~~ 351 (514)
|++.|.. ++.+.++.+.||+++|+++| ++ +|+|++|+|.+|+|++||+|.++|++ ..
T Consensus 187 L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~ 266 (406)
T TIGR03680 187 LLEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIY 266 (406)
T ss_pred HHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccc
Confidence 5566655 67677778899999999998 23 57899999999999999999999985 24
Q ss_pred EEEEEEEECCeeeeecCCCCeEEEEcc---CCCcccceeeeEEccCCCCccceeEEEEEEEEeccc-------ccccccC
Q 010278 352 VKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL-------DNAIFTA 421 (514)
Q Consensus 352 ~~V~si~~~~~~v~~a~aG~~v~~~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~-------~~~~i~~ 421 (514)
++|++|++++.++++|.||++|+++|+ +++..++++||+|++++.+++.+++|+|++.|+... ...+|+.
T Consensus 267 ~~V~sI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~~~~~~~~~~~~f~a~i~~l~~~~~~~~~~~~~~i~~ 346 (406)
T TIGR03680 267 TEITSLRAGGYKVEEARPGGLVGVGTKLDPALTKADALAGQVVGKPGTLPPVWESLELEVHLLERVVGTEEELKVEPIKT 346 (406)
T ss_pred eEEeEEEECCEECCEEcCCCEEEEeeccCCCCCHHHcccccEEEcCCCCCCceeEEEEEEEEEecccCcccccccccCCC
Confidence 799999999999999999999999984 788899999999999987788889999999997532 1368999
Q ss_pred CcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcceEEeeecccccccceEEE--EeCC--e
Q 010278 422 GYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTL--RTEG--K 497 (514)
Q Consensus 422 G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~pi~~e~~~~~~~lgrfil--r~~g--~ 497 (514)
||++++|+++.+++|+|..+. ++ .++++|.+|+|+... .||+| |.++ +
T Consensus 347 g~~~~l~~gt~~~~~~v~~~~--------------------~~--~~~l~l~~p~~~~~g------~r~~~~~~~~~~~~ 398 (406)
T TIGR03680 347 GEVLMLNVGTATTVGVVTSAR--------------------KD--EIEVKLKRPVCAEEG------DRVAISRRVGGRWR 398 (406)
T ss_pred CCEEEEEEccceEEEEEEEcC--------------------Cc--EEEEEECCcEEcCCC------CEEEEEEecCCceE
Confidence 999999999999999999652 11 377889999998876 59999 3345 8
Q ss_pred EEEEEEE
Q 010278 498 TVAVGKV 504 (514)
Q Consensus 498 tva~G~I 504 (514)
++|.|.|
T Consensus 399 ~~g~g~~ 405 (406)
T TIGR03680 399 LIGYGII 405 (406)
T ss_pred EEEEEEe
Confidence 9999987
No 26
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=1.3e-50 Score=437.54 Aligned_cols=335 Identities=27% Similarity=0.411 Sum_probs=283.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
++|+++||+|||||||+++|. |. .+|..++|+.+|+|++.++..+.++++.+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLt---g~-------------------------~~d~~~eE~~rGiTid~~~~~~~~~~~~v 52 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALT---GI-------------------------AADRLPEEKKRGMTIDLGFAYFPLPDYRL 52 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHh---Cc-------------------------cCcCChhHhcCCceEEeEEEEEEeCCEEE
Confidence 479999999999999999993 21 13455678889999999999999999999
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHH
Q 010278 164 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERY 243 (514)
Q Consensus 164 ~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~ 243 (514)
+|||||||++|+++|+.++..+|++|+|||+++|.+ +||.+|+.++..+|+|++|||+||||+ ++ ++.+
T Consensus 53 ~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~-------~qT~ehl~il~~lgi~~iIVVlNK~Dl--v~--~~~~ 121 (581)
T TIGR00475 53 GFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVM-------TQTGEHLAVLDLLGIPHTIVVITKADR--VN--EEEI 121 (581)
T ss_pred EEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEECCCC--CC--HHHH
Confidence 999999999999999999999999999999999865 699999999999999999999999999 43 4566
Q ss_pred HHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEEEEEEE--
Q 010278 244 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF-- 321 (514)
Q Consensus 244 ~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~i~~~~-- 321 (514)
+.+.+++..+++..++. .+++++|+||++|.|+.++... |.+.++.++.+ ..++||+++|+++|
T Consensus 122 ~~~~~ei~~~l~~~~~~--~~~~ii~vSA~tG~GI~eL~~~----------L~~l~~~~~~~--~~~~p~r~~Id~~f~v 187 (581)
T TIGR00475 122 KRTEMFMKQILNSYIFL--KNAKIFKTSAKTGQGIGELKKE----------LKNLLESLDIK--RIQKPLRMAIDRAFKV 187 (581)
T ss_pred HHHHHHHHHHHHHhCCC--CCCcEEEEeCCCCCCchhHHHH----------HHHHHHhCCCc--CcCCCcEEEEEEEEec
Confidence 67777888888877653 2579999999999999987542 45555555443 25789999999999
Q ss_pred ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEccCCCCccce
Q 010278 322 KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAV 401 (514)
Q Consensus 322 ~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~~~~~~ 401 (514)
+|.|+|++|+|.+|+|++||+|.++|.+..++|++|+.+++++++|.||++|+++|+|++..++++|++++++..+ .
T Consensus 188 ~G~GtVv~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~~~~---~ 264 (581)
T TIGR00475 188 KGAGTVVTGTAFSGEVKVGDNLRLLPINHEVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLILTPEDP---K 264 (581)
T ss_pred CCcEEEEEEEEecceEecCCEEEECCCCceEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCceEEcCCCCC---C
Confidence 6899999999999999999999999999999999999999999999999999999999999999999888876532 2
Q ss_pred eEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcceEEeeec
Q 010278 402 TEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKF 481 (514)
Q Consensus 402 ~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~pi~~e~~ 481 (514)
..+...+.. ..+|..|+.+.+|+++.++.|+|..+ |. ..+++.+.+|+++...
T Consensus 265 ~~~~~~~~~-----~~~l~~~~~~~~~~gt~~~~~~i~~l----~~------------------~~~~l~l~~P~~~~~g 317 (581)
T TIGR00475 265 LRVVVKFIA-----EVPLLELQPYHIAHGMSVTTGKISLL----DK------------------GIALLTLDAPLILAKG 317 (581)
T ss_pred ceEEEEEEc-----CCccCCCCeEEEEEeceEEEEEEEEc----cC------------------cEEEEEECCceecCCC
Confidence 223333222 24688999999999999999998743 21 1678889999998875
Q ss_pred ccccccceEEEEeC-CeEEEEEEEEec
Q 010278 482 ADFAQLGRFTLRTE-GKTVAVGKVTEL 507 (514)
Q Consensus 482 ~~~~~lgrfilr~~-g~tva~G~I~~v 507 (514)
.||++|++ .+|+|+|.|+..
T Consensus 318 ------d~~i~r~~~~~tiggg~vl~~ 338 (581)
T TIGR00475 318 ------DKLVLRDSSGNFLAGARVLEP 338 (581)
T ss_pred ------CEEEEEeCCCEEEeeeEEecC
Confidence 49999995 699999999987
No 27
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=100.00 E-value=1.4e-51 Score=398.64 Aligned_cols=380 Identities=25% Similarity=0.355 Sum_probs=312.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchh-----HHHHHHHHHhhcCccchhhhhhccCchhhhhcccE----EEee
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDR-----TIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKT----VEVG 152 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~-----~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT----~~~~ 152 (514)
-..+|+++|++|+|||||++.| +.|.++++ +.-..+++..++||+|+..+.++.+..+...-+.. -++.
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVL--THgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~Ld 209 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVL--THGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLD 209 (641)
T ss_pred eeEEEEEEecccCCcceeEeee--eecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccc
Confidence 3578999999999999999998 66777664 22223556679999999999988876654321111 0111
Q ss_pred eEE-EEeCCeEEEEEeCCCCcchHHHHHHhhh--hcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe
Q 010278 153 RAH-FETETTRFTILDAPGHKSYVPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 229 (514)
Q Consensus 153 ~~~-~~~~~~~i~liDtPGh~~f~~~~~~g~~--~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviN 229 (514)
+.. .+...+.++|||.+||++|+++++.|+. .+|+.+|+|.|+.|+. +.|+||+.++.++.+| ++||++
T Consensus 210 WvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-------GmTKEHLgLALaL~VP-VfvVVT 281 (641)
T KOG0463|consen 210 WVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-------GMTKEHLGLALALHVP-VFVVVT 281 (641)
T ss_pred ceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-------eccHHhhhhhhhhcCc-EEEEEE
Confidence 222 2234578999999999999999999985 7999999999999965 7999999999999999 889999
Q ss_pred eccCCCCCchHHHHHHHHhhhhhhhhhccCc--------------------ccCCeeEEeeccccccccccccccCCCCC
Q 010278 230 KMDDHTVNWSKERYDEIESKMTPFLKASGYN--------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPW 289 (514)
Q Consensus 230 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~--------------------~~~~~~iipiSa~~G~gi~~l~~~~~~~w 289 (514)
|+|++.++ -+++....+.++|++.|+. ...-+|++.+|..+|+|+.-
T Consensus 282 KIDMCPAN----iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L--------- 348 (641)
T KOG0463|consen 282 KIDMCPAN----ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL--------- 348 (641)
T ss_pred eeccCcHH----HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH---------
Confidence 99997654 5667777788888887764 23457899999999999874
Q ss_pred CCcccHHHHhhhccCC-CCCCCCCceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCC----cEEEEEEEEECCe
Q 010278 290 WNGPCLFEALDRIEIT-PRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK----AQVKVLAIYCDDN 362 (514)
Q Consensus 290 ~~g~tL~~~l~~l~~~-~~~~~~p~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~----~~~~V~si~~~~~ 362 (514)
|..+|+.++.. ..+.+.|..|.|+++| +|.|+|+.|+..+|+|+.+|.+.++|.. .+..|+||++.+-
T Consensus 349 -----LkmFLNlls~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRM 423 (641)
T KOG0463|consen 349 -----LKMFLNLLSLRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHRKRM 423 (641)
T ss_pred -----HHHHHhhcCcccccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhhhccc
Confidence 33455554432 2356789999999999 7999999999999999999999999975 5789999999999
Q ss_pred eeeecCCCCeEEEEccCCCcccceeeeEEccCCCCccceeEEEEEEEEeccccc-ccccCCcEEEEEEEeEEEEEEEEEE
Q 010278 363 RVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVEL 441 (514)
Q Consensus 363 ~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i 441 (514)
++..+.+||.+.++|+.++..++++|||+++++..|+++|+|+|+|.+ ++| +.|.+.|+.++||++.+++|.|.++
T Consensus 424 pV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~lkPqAsweFEaEILV---LHHPTTIsprYQAMvHcGSiRQTAtivsM 500 (641)
T KOG0463|consen 424 PVGIVRCGQTASFALKKIKRKDVRKGMVMVSPKLKPQASWEFEAEILV---LHHPTTISPRYQAMVHCGSIRQTATIVSM 500 (641)
T ss_pred cceEEeccchhhhHhhhcchhhhhcceEEecCCCCcceeeEEeeeEEE---EecCCccCcchhheeeeccccceeeeeec
Confidence 999999999999999999999999999999999999999999999999 777 8899999999999999999999865
Q ss_pred EEEeecCCCcccccccccccCCCEEEEEEEEc-ceEEeeecccccccceEEEEeCCeEEEEEEEEecCCCCCC
Q 010278 442 LHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVN-NSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVSSS 513 (514)
Q Consensus 442 ~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~-~pi~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~~~~~~ 513 (514)
. -.+|+.||.+.|.|+|- +|-++.+ |.-.++++|+|.|+|.|+++.+..++
T Consensus 501 ~--------------kdcLRTGDka~V~FrFIkqPEYir~-------gqrlVFREGRTKAVGti~~~lp~~~~ 552 (641)
T KOG0463|consen 501 G--------------KDCLRTGDKAKVQFRFIKQPEYIRP-------GQRLVFREGRTKAVGTISSVLPQESL 552 (641)
T ss_pred C--------------hhhhhcCCcceEEEEEecCcceecC-------CceEEeecccceeeeeeccccccccc
Confidence 2 24799999999999984 5555443 55556679999999999999887654
No 28
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-48 Score=390.74 Aligned_cols=296 Identities=29% Similarity=0.450 Sum_probs=258.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
+|+..||+|||||||+.+| +| ..+|..+++.++|+|++++++++..+++.+.
T Consensus 2 ii~t~GhidHgkT~L~~al---tg-------------------------~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~ 53 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKAL---TG-------------------------GVTDRLPEEKKRGITIDLGFYYRKLEDGVMG 53 (447)
T ss_pred eEEEeeeeeccchhhhhhh---cc-------------------------cccccchhhhhcCceEeeeeEeccCCCCceE
Confidence 6899999999999999888 22 2356778999999999999999999999999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHH
Q 010278 165 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 244 (514)
Q Consensus 165 liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~ 244 (514)
|||+|||++|+++|+.|+...|+|+||||+++|.+ +||.||+..+..+|+++.+||+||+|+ ++ ..+.+
T Consensus 54 fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~-------~qtgEhL~iLdllgi~~giivltk~D~--~d--~~r~e 122 (447)
T COG3276 54 FIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLM-------AQTGEHLLILDLLGIKNGIIVLTKADR--VD--EARIE 122 (447)
T ss_pred EeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcc-------hhhHHHHHHHHhcCCCceEEEEecccc--cc--HHHHH
Confidence 99999999999999999999999999999999965 799999999999999999999999999 43 23555
Q ss_pred HHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhcc-CCCCCCCCCceEEEEEEE--
Q 010278 245 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIE-ITPRDPNGPFRMPIIDKF-- 321 (514)
Q Consensus 245 ~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~-~~~~~~~~p~~~~i~~~~-- 321 (514)
+..+++...+. +. +.+++++|+.+|+||++|. +.|..+. .+.++.+.||+++|+++|
T Consensus 123 ~~i~~Il~~l~---l~---~~~i~~~s~~~g~GI~~Lk--------------~~l~~L~~~~e~d~~~~fri~IDraFtV 182 (447)
T COG3276 123 QKIKQILADLS---LA---NAKIFKTSAKTGRGIEELK--------------NELIDLLEEIERDEQKPFRIAIDRAFTV 182 (447)
T ss_pred HHHHHHHhhcc---cc---cccccccccccCCCHHHHH--------------HHHHHhhhhhhhccCCceEEEEeeEEEe
Confidence 55555444333 43 6789999999999999853 3333333 456788999999999999
Q ss_pred ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEccCCCCccce
Q 010278 322 KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAV 401 (514)
Q Consensus 322 ~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~~~~~~ 401 (514)
+|.|+|++|.+.||++++||++++.|.++.++|||||.+..++++|.||++|+++|+|++.+++.||++|++++ +..++
T Consensus 183 KGvGTVVtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~-~~~v~ 261 (447)
T COG3276 183 KGVGTVVTGTVLSGEVKVGDKLYLSPINKEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPE-PLEVT 261 (447)
T ss_pred ccccEEEEeEEeeeeEEECCEEEEecCCCeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhcccEeccCC-CCCcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999987 44678
Q ss_pred eEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEE
Q 010278 402 TEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 441 (514)
Q Consensus 402 ~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i 441 (514)
++|.+.+.|... ...++..|....+|++..+++|++..+
T Consensus 262 ~~~~~~~~i~~~-~~~~l~~~~~~hi~~g~~~~~~~i~~l 300 (447)
T COG3276 262 TRLIVELEIDPL-FKKTLKQGQPVHIHVGLRSVTGRIVPL 300 (447)
T ss_pred eEEEEEEEeccc-cccccCCCceEEEEEeccccceEeeec
Confidence 889998887432 236789999999999999999998854
No 29
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-45 Score=356.83 Aligned_cols=377 Identities=23% Similarity=0.341 Sum_probs=309.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchh------HHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeee-
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDR------TIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR- 153 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~------~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~- 153 (514)
.-..++|++|..|+|||||++.| ..|.++++ .+.++.|+ .++||+|+....++.+...++--+.......
T Consensus 165 fievRvAVlGg~D~GKSTLlGVL--TQgeLDnG~GrARln~FRh~HE-iqsGrTSsis~evlGFd~~g~vVNY~~~~taE 241 (591)
T KOG1143|consen 165 FIEVRVAVLGGCDVGKSTLLGVL--TQGELDNGNGRARLNIFRHPHE-IQSGRTSSISNEVLGFDNRGKVVNYAQNMTAE 241 (591)
T ss_pred ceEEEEEEecCcccCcceeeeee--ecccccCCCCeeeeehhcchhh-hccCcccccchhcccccccccccchhhcccHH
Confidence 34579999999999999999998 67777765 35565555 4789999988888877654433222211111
Q ss_pred EEEEeCCeEEEEEeCCCCcchHHHHHHhhh--hcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeec
Q 010278 154 AHFETETTRFTILDAPGHKSYVPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 231 (514)
Q Consensus 154 ~~~~~~~~~i~liDtPGh~~f~~~~~~g~~--~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~ 231 (514)
...+...+.++|||.+||.+|.++++.|+. .+|+|+|||+|+.|.. ..|+||+.++.++++| |+|+++||
T Consensus 242 Ei~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~-------~tTrEHLgl~~AL~iP-fFvlvtK~ 313 (591)
T KOG1143|consen 242 EIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGIT-------WTTREHLGLIAALNIP-FFVLVTKM 313 (591)
T ss_pred HHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCc-------cccHHHHHHHHHhCCC-eEEEEEee
Confidence 113445788999999999999999999985 6899999999999964 6899999999999999 99999999
Q ss_pred cCCCCCchHHHHHHHHhhhhhhhhhccCc--------------------ccCCeeEEeeccccccccccccccCCCCCCC
Q 010278 232 DDHTVNWSKERYDEIESKMTPFLKASGYN--------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWN 291 (514)
Q Consensus 232 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~--------------------~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~ 291 (514)
|+ . ++..++.+..++..+|++.|+. ...-+|++.+|..+|+|+.-
T Consensus 314 Dl--~--~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l----------- 378 (591)
T KOG1143|consen 314 DL--V--DRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL----------- 378 (591)
T ss_pred cc--c--cchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH-----------
Confidence 99 4 3456788889999999988875 12357999999999999874
Q ss_pred cccHHHHhhhccCCCC------CCCCCceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCC----cEEEEEEEEE
Q 010278 292 GPCLFEALDRIEITPR------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK----AQVKVLAIYC 359 (514)
Q Consensus 292 g~tL~~~l~~l~~~~~------~~~~p~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~----~~~~V~si~~ 359 (514)
|..+|+.+++... -...|..|.|++.| +..|.|+.|.+.+|.++.|+.+.++|.. .+.+|-+|++
T Consensus 379 ---l~~fLn~Lsp~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~R 455 (591)
T KOG1143|consen 379 ---LRTFLNCLSPAGTAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRR 455 (591)
T ss_pred ---HHHHHhhcCCcCChHHHHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeeec
Confidence 3445555544222 23567899999999 6899999999999999999999999976 5789999999
Q ss_pred CCeeeeecCCCCeEEEEccCCCcccceeeeEEccCCCCccceeEEEEEEEEeccccc-ccccCCcEEEEEEEeEEEEEEE
Q 010278 360 DDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEI 438 (514)
Q Consensus 360 ~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i 438 (514)
++.++..+.|||.+.+.|...+..-+|+||||..++..|+.+..|+|.+.+ +-| +.|..||+..+|+++++++|.|
T Consensus 456 nr~acrvvraGqaAslsl~d~D~~~LR~GMVl~~~~~nP~~c~~F~A~~~l---LfHaT~i~~GFQ~TVhiGsvrqTAvi 532 (591)
T KOG1143|consen 456 NRQACRVVRAGQAASLSLNDPDGVSLRRGMVLAEIDHNPPVCYEFTANLLL---LFHATYICEGFQATVHIGSVRQTAVI 532 (591)
T ss_pred cccceeeecCccceeeeccCCCccchhcceEEeecCCCCceEEEEeeeehh---hhhhHhheecceEEEEEcceeeeeee
Confidence 999999999999999999877777899999999999889999999999998 455 8999999999999999999998
Q ss_pred EEEEEEeecCCCcccccccccccCCCEEEEEEEEc-ceEEeeecccccccceEEEEeCCeEEEEEEEEecCC
Q 010278 439 VELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVN-NSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 509 (514)
Q Consensus 439 ~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~-~pi~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~~ 509 (514)
..|.. ..+|+.|++|.|+|.|. +|-++. -|.-+|+++|.|.|+|.|++|-+
T Consensus 533 ~~I~~-------------~d~lrtg~~AvV~f~F~~hPEyir-------~G~~ilfReG~tKGiG~Vt~Vfp 584 (591)
T KOG1143|consen 533 THIDD-------------ADCLRTGKWAVVKFCFAYHPEYIR-------EGSPILFREGKTKGIGEVTKVFP 584 (591)
T ss_pred eeecc-------------cccccCCceEEEEEEecCCchhcc-------CCCeeeeecccccccceEEEEEe
Confidence 87642 24599999999999974 554443 46778888999999999998765
No 30
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-47 Score=378.12 Aligned_cols=370 Identities=37% Similarity=0.644 Sum_probs=336.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
.++.+++|+++||+++||||+.+ +.+|.++.+.+.++++++.+.|+++|.|+|++|.+..|+++|++++.....|++
T Consensus 3 ~~~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t 79 (391)
T KOG0052|consen 3 KEKIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 79 (391)
T ss_pred CcccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccc
Confidence 45678999999999999999997 789999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
..+.++++|.|||++|.++|+.+.+++|.++|+|.+.-|.||+++...+||+||+.++..+|+.++++.+||||.....|
T Consensus 80 ~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~~~ 159 (391)
T KOG0052|consen 80 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 159 (391)
T ss_pred eeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEEEE
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 318 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~i~ 318 (514)
+..+++++....+.+.++.++++. .. ..
T Consensus 160 s~~r~~ei~k~~~~~~~~~g~n~~----------------------------------~~------------------~~ 187 (391)
T KOG0052|consen 160 SEARYEEIKKEVSSYIKKIGYNPA----------------------------------AV------------------LQ 187 (391)
T ss_pred cccchhhhheeeeeeeeccccCCh----------------------------------hh------------------hc
Confidence 999999998877777666665410 00 11
Q ss_pred EEEc--cCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEccCC-
Q 010278 319 DKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA- 395 (514)
Q Consensus 319 ~~~~--~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~- 395 (514)
++|+ +.| +..|.++.++.+...|.....++++..+++....++.+|++|+++..+++..++++|+++.+..
T Consensus 188 ~~~~~~g~~------~~t~iie~~~~v~~~~~~~~~~vk~~~~~~~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~dsK~ 261 (391)
T KOG0052|consen 188 DVYKIGGIG------VETGISEPGMDVTFAPSGVTTEVKSVKVHHEAGSEDLPGDNVGFNVKNVSVKDIDRGNVVGDSKN 261 (391)
T ss_pred cceeeccee------eeeeeccCccceeccccccccccccEEEEeccCccCCCcceeeeecccCccCcccccceeccccc
Confidence 2221 223 7788999999999999888899999999998888999999999999999999999999998866
Q ss_pred CCccceeEEEEEEEEeccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcc
Q 010278 396 KPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNN 474 (514)
Q Consensus 396 ~~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~ 474 (514)
.|+.....|.+++++ ++| ..|..||.|++.||+.+++|++..|..++|..+|+..+..|+++++++.+.+...+.+
T Consensus 262 ~p~~~~~g~t~qvii---lnhpgqis~gy~pvldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~~daai~~~vp~k 338 (391)
T KOG0052|consen 262 DPPVEAAGFTAQVII---LNHPGQISVGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKSGDAAIVEMVPGK 338 (391)
T ss_pred CCccccccceeeEEE---ecCccccCCCccccccccccceeeehhhchhhhhcCCceeecCCCccccCCcceeeeeccCC
Confidence 466677889999999 566 7899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeecccccccceEEEEeCCeEEEEEEEEecCCCCC
Q 010278 475 SICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVSS 512 (514)
Q Consensus 475 pi~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~~~~~ 512 (514)
|+|+|.|++|+.+|||.+|+...|+|.|+|..+.....
T Consensus 339 p~~ve~~~~~~~l~rfav~d~~~tvavgvikav~k~~~ 376 (391)
T KOG0052|consen 339 PLCVESFSDYVPLGRFAVRDMRQTVAVGVIKAVDKKDA 376 (391)
T ss_pred ccccccccccccccchhhhhhhccccccceeeeeeccc
Confidence 99999999999999999999999999999998876554
No 31
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.8e-41 Score=319.57 Aligned_cols=343 Identities=26% Similarity=0.407 Sum_probs=279.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe--
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-- 158 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~-- 158 (514)
.+..||+++||||||||||+.+| +|. -+|++.+|-+||+||.+++.....
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~Al---sGv-------------------------wT~~hseElkRgitIkLGYAd~~i~k 59 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKAL---SGV-------------------------WTDRHSEELKRGITIKLGYADAKIYK 59 (415)
T ss_pred CcceEeeeeeecccchhhheehh---hce-------------------------eeechhHHHhcCcEEEeccccCceEe
Confidence 46799999999999999999988 332 246667888999999998754211
Q ss_pred ------------------C------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHH
Q 010278 159 ------------------E------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 214 (514)
Q Consensus 159 ------------------~------~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~ 214 (514)
. -+++.|+|+|||+-.+.+|++|+...|.|||||+|++.. .++||+|||.
T Consensus 60 C~~c~~~~~y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpc------PQPQT~EHl~ 133 (415)
T COG5257 60 CPECYRPECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC------PQPQTREHLM 133 (415)
T ss_pred CCCCCCCcccccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCC------CCCchHHHHH
Confidence 0 156999999999999999999999999999999999986 5799999999
Q ss_pred HHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCccc
Q 010278 215 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPC 294 (514)
Q Consensus 215 ~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~t 294 (514)
.+..+|++++|++-||+|+ + ++++..+-.+++.+|++-.- .++.|+||+||.++.||+.
T Consensus 134 AleIigik~iiIvQNKIDl--V--~~E~AlE~y~qIk~FvkGt~---Ae~aPIIPiSA~~~~NIDa-------------- 192 (415)
T COG5257 134 ALEIIGIKNIIIVQNKIDL--V--SRERALENYEQIKEFVKGTV---AENAPIIPISAQHKANIDA-------------- 192 (415)
T ss_pred HHhhhccceEEEEecccce--e--cHHHHHHHHHHHHHHhcccc---cCCCceeeehhhhccCHHH--------------
Confidence 9999999999999999999 4 34444455556666666443 2478999999999999997
Q ss_pred HHHHhh-hccCCCCCCCCCceEEEEEEEc----c------CCeEEEEEEeeeeeecCCEEEEecCC------------cE
Q 010278 295 LFEALD-RIEITPRDPNGPFRMPIIDKFK----D------MGTVVMGKVESGSVREGDSLLVMPNK------------AQ 351 (514)
Q Consensus 295 L~~~l~-~l~~~~~~~~~p~~~~i~~~~~----~------~G~v~~g~v~sG~l~~gd~v~~~p~~------------~~ 351 (514)
|++++. .++.|.++.++|.+|+|.++|. | .|-|+.|.+.+|.|++||+|.+.|+- ..
T Consensus 193 l~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~ 272 (415)
T COG5257 193 LIEAIEKYIPTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPIT 272 (415)
T ss_pred HHHHHHHhCCCCccCCCCCceEEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEee
Confidence 555554 5899999999999999999982 2 68899999999999999999999973 24
Q ss_pred EEEEEEEECCeeeeecCCCCeEEEEcc---CCCcccceeeeEEccCCCCccceeEEEEEEEEecccc------c-ccccC
Q 010278 352 VKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD------N-AIFTA 421 (514)
Q Consensus 352 ~~V~si~~~~~~v~~a~aG~~v~~~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~------~-~~i~~ 421 (514)
.+|.||+-.+..+++|.||..+++.-. .+.+.|--.|.|+..++..|+..+.|+.+..+|+..- + .+|+.
T Consensus 273 T~i~Sl~ag~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V~G~pG~lPpv~~~~~ie~~LL~RvvG~~~e~kvepik~ 352 (415)
T COG5257 273 TEIVSLQAGGEDVEEARPGGLVGVGTKLDPTLTKADALVGQVVGKPGTLPPVWTSIRIEYHLLERVVGTKEELKVEPIKT 352 (415)
T ss_pred EEEEEEEeCCeeeeeccCCceEEEecccCcchhhhhhhccccccCCCCCCCceEEEEEEeeehhhhhCcccccccccccC
Confidence 689999999999999999999999543 3455667789999999999999999999999965211 1 58999
Q ss_pred CcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcceEEeeecccccccceEEEEeC----Ce
Q 010278 422 GYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTE----GK 497 (514)
Q Consensus 422 G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~pi~~e~~~~~~~lgrfilr~~----g~ 497 (514)
|-..++.+++...-+.|.+.. + -.+++.|.+|+|.+.. .|.++-+. =|
T Consensus 353 ~E~Lml~VGtatT~GvV~~~k--------------------~--d~~ev~Lk~Pvcae~g------~rvaisRri~~rWR 404 (415)
T COG5257 353 NEVLMLNVGTATTVGVVTSAK--------------------K--DEIEVKLKRPVCAEIG------ERVAISRRIGNRWR 404 (415)
T ss_pred CCeEEEEeecceeEEEEEEec--------------------C--ceEEEEeccceecCCC------CEEEEEeeecceEE
Confidence 999999999998888877542 1 1577888999998875 35555331 27
Q ss_pred EEEEEEEEe
Q 010278 498 TVAVGKVTE 506 (514)
Q Consensus 498 tva~G~I~~ 506 (514)
.+|+|.|..
T Consensus 405 LIG~G~ik~ 413 (415)
T COG5257 405 LIGYGTIKE 413 (415)
T ss_pred EEeEEEEec
Confidence 899999874
No 32
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=2.5e-40 Score=356.78 Aligned_cols=279 Identities=24% Similarity=0.344 Sum_probs=230.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeE
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 162 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~ 162 (514)
.+||+|+||+|||||||+++|++.+|.+..... .-.++||..+.|+++|+|+......+.|.++.
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~---------------v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~k 65 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEA---------------VAERVMDSNDLERERGITILAKNTAIRYNGTK 65 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCccccc---------------ceeecccCchHHHhCCccEEeeeEEEEECCEE
Confidence 379999999999999999999999998764320 01268999999999999999999999999999
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHH
Q 010278 163 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 242 (514)
Q Consensus 163 i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~ 242 (514)
|+|||||||.+|...+.++++.+|++||||||.+|++ +||++++..+..+++| +|||+||||+... +
T Consensus 66 inlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~-------~qT~~~l~~a~~~~ip-~IVviNKiD~~~a-----~ 132 (594)
T TIGR01394 66 INIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPM-------PQTRFVLKKALELGLK-PIVVINKIDRPSA-----R 132 (594)
T ss_pred EEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCc-------HHHHHHHHHHHHCCCC-EEEEEECCCCCCc-----C
Confidence 9999999999999999999999999999999999864 7999999999999999 7899999999432 3
Q ss_pred HHHHHhhhhhhhhhccCcc-cCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEEEEEEE
Q 010278 243 YDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF 321 (514)
Q Consensus 243 ~~~i~~~l~~~l~~~g~~~-~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~i~~~~ 321 (514)
++++.+++..++..++... ...+|++++||++|.+...+.. ..+.-.+.|..+++.++.|..+.++||++.|.+++
T Consensus 133 ~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~---~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~ 209 (594)
T TIGR01394 133 PDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDD---PSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLD 209 (594)
T ss_pred HHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcc---cccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEE
Confidence 5566677777777666431 1247899999999987544311 01111122344666788887778899999999988
Q ss_pred --ccCCeEEEEEEeeeeeecCCEEEEecCC---cEEEEEEEEEC----CeeeeecCCCCeEEEEccCCCcccceeeeEEc
Q 010278 322 --KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 392 (514)
Q Consensus 322 --~~~G~v~~g~v~sG~l~~gd~v~~~p~~---~~~~V~si~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~ 392 (514)
++.|++++|||.+|+|+.||.|++.|.+ ...+|++|+.+ +.++++|.|||+|++ .++ .++.+||+||
T Consensus 210 ~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i--~gl--~~i~~Gdtl~ 285 (594)
T TIGR01394 210 YDEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAV--AGL--EDINIGETIA 285 (594)
T ss_pred eeCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEE--eCC--cccCCCCEEe
Confidence 5789999999999999999999999874 25789999875 678999999999996 465 4589999999
Q ss_pred cCCC
Q 010278 393 SVAK 396 (514)
Q Consensus 393 ~~~~ 396 (514)
++++
T Consensus 286 ~~~~ 289 (594)
T TIGR01394 286 DPEV 289 (594)
T ss_pred CCCc
Confidence 8774
No 33
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=100.00 E-value=4.3e-39 Score=309.08 Aligned_cols=218 Identities=64% Similarity=1.049 Sum_probs=198.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
||+++||+|||||||+++|++.+|.++...++++++.+.+.|.+++.|+|++|..+.|+++|+|++.....|++.++.++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 69999999999999999999999999999888999888899999999999999999999999999999999999999999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHH
Q 010278 165 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 244 (514)
Q Consensus 165 liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~ 244 (514)
|+|||||.+|...++.+++.+|++|+|||+..+.++..|....|+.+++.++..++++++||++||||+...+|++..++
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHH
Confidence 99999999999999999999999999999999876665656689999999998899777999999999965567788899
Q ss_pred HHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCC
Q 010278 245 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEIT 305 (514)
Q Consensus 245 ~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~ 305 (514)
.+.+++..+++.+++.. ..++++|+||++|.||.+..+ .++||+|+||++.|+.+.++
T Consensus 161 ~i~~~l~~~l~~~~~~~-~~~~ii~iSA~tg~gi~~~~~--~~~w~~g~~l~~~l~~~~~~ 218 (219)
T cd01883 161 EIKKELSPFLKKVGYNP-KDVPFIPISGLTGDNLIEKSE--NMPWYKGPTLLEALDSLEPP 218 (219)
T ss_pred HHHHHHHHHHHHcCCCc-CCceEEEeecCcCCCCCcCCC--CCCCccCCcHHHHHhCCCCC
Confidence 99999999999888752 358999999999999997654 59999999999999987553
No 34
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-39 Score=307.92 Aligned_cols=346 Identities=24% Similarity=0.352 Sum_probs=267.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC---
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--- 159 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~--- 159 (514)
.+|++++||+|||||||..+|... + ..-..|..+..++||+|.|.++..+...
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~-~-----------------------STaAFDk~pqS~eRgiTLDLGFS~~~v~~pa 62 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSEL-G-----------------------STAAFDKHPQSTERGITLDLGFSTMTVLSPA 62 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhh-c-----------------------cchhhccCCcccccceeEeecceeeeccccc
Confidence 489999999999999999998321 1 1224678888889999999999887653
Q ss_pred ------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 160 ------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 160 ------~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
.-+++|+|+|||...+++.+.|+...|..+||||+..| .+.||.|++.+...+-- +.||++||+|.
T Consensus 63 rLpq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG-------~QtQtAEcLiig~~~c~-klvvvinkid~ 134 (522)
T KOG0461|consen 63 RLPQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKG-------KQTQTAECLIIGELLCK-KLVVVINKIDV 134 (522)
T ss_pred ccCccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcc-------cccccchhhhhhhhhcc-ceEEEEecccc
Confidence 34679999999999999999999999999999999999 46899999988776664 48999999998
Q ss_pred CCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccc----cccccccccCCCCCCCcccHHHHhhh-ccCCCCC
Q 010278 234 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG----LNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRD 308 (514)
Q Consensus 234 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G----~gi~~l~~~~~~~w~~g~tL~~~l~~-l~~~~~~ 308 (514)
...+..+..+++....++.-|++.+|. ++.|++++||..| ++|.+ |.++|.+ +-.|.++
T Consensus 135 lpE~qr~ski~k~~kk~~KtLe~t~f~--g~~PI~~vsa~~G~~~~~~i~e--------------L~e~l~s~if~P~Rd 198 (522)
T KOG0461|consen 135 LPENQRASKIEKSAKKVRKTLESTGFD--GNSPIVEVSAADGYFKEEMIQE--------------LKEALESRIFEPKRD 198 (522)
T ss_pred ccchhhhhHHHHHHHHHHHHHHhcCcC--CCCceeEEecCCCccchhHHHH--------------HHHHHHHhhcCCCcC
Confidence 666656677888889999999999986 5789999999999 55555 5555554 6778999
Q ss_pred CCCCceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccce
Q 010278 309 PNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDIL 386 (514)
Q Consensus 309 ~~~p~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~ 386 (514)
..+||.|.|+++| ||.|+|.+|+|.+|.|+.|+.|.+...+..-+||++++++.++.+|.+|+++++.+...+...+.
T Consensus 199 ~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqmf~~~vtsa~~GdR~g~cVtqFd~klle 278 (522)
T KOG0461|consen 199 EEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKRKVKSLQMFKQRVTSAAAGDRAGFCVTQFDEKLLE 278 (522)
T ss_pred CCCCeEEEeeeeEEeccCceEEeeeEEEeEEecCcEEeecccchhhhhhhHHHHhhhhhhhhcccceeeeeeccCHHHHh
Confidence 9999999999999 89999999999999999999999988888889999999999999999999999999988888889
Q ss_pred eeeEEccCCCCccceeEEEEEEEEeccccc--ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCC----------cccc
Q 010278 387 SGFVLSSVAKPVAAVTEFIAQLQILELLDN--AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTK----------KPMK 454 (514)
Q Consensus 387 ~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~--~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg----------~~~~ 454 (514)
||- ++.|+ ...++ .|-+..+..+.- .+|..-.+..+-++..++.+.+.-+ +..|.-+. ....
T Consensus 279 Rgi-~~~pg-~Lk~~---~avl~~vepI~yfr~~i~sk~K~Hi~VgheTVMa~~~ff-~d~d~~~~tf~~~kEye~~E~d 352 (522)
T KOG0461|consen 279 RGI-CGPPG-TLKST---KAVLATVEPIQYFRKSINSKSKIHIAVGHETVMAECQFF-KDTDGTTSTFQLDKEYENGEFD 352 (522)
T ss_pred ccc-cCCCc-cccee---eeeeEeecchHHHhhhhhhcceEEEEehhhhhhhheEEe-eccCCcccccccchhhhccccc
Confidence 984 34444 22333 333333322221 4444333333333333444444422 22222110 0112
Q ss_pred cccccccCCCEEEEEEEEcceEEeeecc
Q 010278 455 KKVLFVKNGAIVVCRIQVNNSICTEKFA 482 (514)
Q Consensus 455 ~~~~~l~~g~~a~v~~~~~~pi~~e~~~ 482 (514)
--|..+.+.+...+-|+|++|+.+..|+
T Consensus 353 ~~Pa~~~~~~~~~aL~~FEkpv~~P~~s 380 (522)
T KOG0461|consen 353 MLPALLAPCDVIQALFSFEKPVFLPEYS 380 (522)
T ss_pred cChhhcCCchheeeeeeecccccCcccc
Confidence 3366788888999999999999988764
No 35
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-38 Score=323.23 Aligned_cols=267 Identities=23% Similarity=0.329 Sum_probs=226.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.+|++|+.|+|||||||.++||..+|.++.+.+++ .+||..+.||+||||+......+.+.
T Consensus 57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~----------------q~LDkl~vERERGITIkaQtasify~ 120 (650)
T KOG0462|consen 57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQE----------------QVLDKLQVERERGITIKAQTASIFYK 120 (650)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchh----------------hhhhhhhhhhhcCcEEEeeeeEEEEE
Confidence 36789999999999999999999999999888765433 57999999999999999999888888
Q ss_pred C---eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCC
Q 010278 160 T---TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 160 ~---~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~ 236 (514)
+ +.+++||||||.+|..+..+.+..||+|||||||.+|+ ++||...++++...|+. +|.|+||+|++.+
T Consensus 121 ~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGv-------qAQT~anf~lAfe~~L~-iIpVlNKIDlp~a 192 (650)
T KOG0462|consen 121 DGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGV-------QAQTVANFYLAFEAGLA-IIPVLNKIDLPSA 192 (650)
T ss_pred cCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCc-------hHHHHHHHHHHHHcCCe-EEEeeeccCCCCC
Confidence 7 99999999999999999999999999999999999995 48999999999999998 9999999999766
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEE
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 316 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~ 316 (514)
+ .+++.+++...+... ..+++.+||++|.|+.++ |...++.+|+|....++|||+.
T Consensus 193 d-----pe~V~~q~~~lF~~~------~~~~i~vSAK~G~~v~~l-------------L~AII~rVPpP~~~~d~plr~L 248 (650)
T KOG0462|consen 193 D-----PERVENQLFELFDIP------PAEVIYVSAKTGLNVEEL-------------LEAIIRRVPPPKGIRDAPLRML 248 (650)
T ss_pred C-----HHHHHHHHHHHhcCC------ccceEEEEeccCccHHHH-------------HHHHHhhCCCCCCCCCcchHHH
Confidence 4 345566665555432 347999999999999985 5568889999999999999999
Q ss_pred EEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC---CeeeeecCCCCeEEEEccCCC-cccceeeeE
Q 010278 317 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGIE-EEDILSGFV 390 (514)
Q Consensus 317 i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~---~~~v~~a~aG~~v~~~l~~~~-~~~i~~G~v 390 (514)
+.+++ .-+|.++.++|..|.++.||+|..+.+++...|+.+..+ ..++....+||...|.. ++. ..+...|++
T Consensus 249 ifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~-~mr~~~ea~IGdT 327 (650)
T KOG0462|consen 249 IFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQVGYIIC-NMRNVKEAQIGDT 327 (650)
T ss_pred hhhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeecccccceeEe-cccccccccccce
Confidence 99998 458999999999999999999999999888888887765 34555666666544422 222 456889999
Q ss_pred EccCC
Q 010278 391 LSSVA 395 (514)
Q Consensus 391 l~~~~ 395 (514)
+++..
T Consensus 328 i~~~~ 332 (650)
T KOG0462|consen 328 IAHKS 332 (650)
T ss_pred eeecc
Confidence 98865
No 36
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-37 Score=310.29 Aligned_cols=280 Identities=24% Similarity=0.338 Sum_probs=233.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
...+||||+.|||||||||++.||.++|.+..++ -..-.+||....|++|||||-.....+.|++
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e---------------~v~ERvMDSnDlEkERGITILaKnTav~~~~ 67 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFRERE---------------EVAERVMDSNDLEKERGITILAKNTAVNYNG 67 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhcccccccc---------------chhhhhcCccchhhhcCcEEEeccceeecCC
Confidence 4578999999999999999999999999877643 1224579999999999999999999999999
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~ 240 (514)
++|+|+|||||.+|-....+.++..|.++|+|||.+|.| +||+..+..+..+|++ .||||||+|++.+
T Consensus 68 ~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpM-------PQTrFVlkKAl~~gL~-PIVVvNKiDrp~A---- 135 (603)
T COG1217 68 TRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPM-------PQTRFVLKKALALGLK-PIVVINKIDRPDA---- 135 (603)
T ss_pred eEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCC-------CchhhhHHHHHHcCCC-cEEEEeCCCCCCC----
Confidence 999999999999999999999999999999999999987 7999999999999999 6899999999654
Q ss_pred HHHHHHHhhhhhhhhhccCcc-cCCeeEEeeccccccccccccccCCCCCCCcccHHH-HhhhccCCCCCCCCCceEEEE
Q 010278 241 ERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFE-ALDRIEITPRDPNGPFRMPII 318 (514)
Q Consensus 241 ~~~~~i~~~l~~~l~~~g~~~-~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~-~l~~l~~~~~~~~~p~~~~i~ 318 (514)
+.+++.+++-.++-.++-+. +-++|++..||+.|.--.++.+.. -.-..|++ +++.+|.|..+.++||+|.|.
T Consensus 136 -rp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~----~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt 210 (603)
T COG1217 136 -RPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEA----DDMAPLFETILDHVPAPKGDLDEPLQMQVT 210 (603)
T ss_pred -CHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccc----cchhHHHHHHHHhCCCCCCCCCCCeEEEEE
Confidence 45567777777777776542 236899999999997443332210 00112554 678899999999999999997
Q ss_pred EEE--ccCCeEEEEEEeeeeeecCCEEEEecCC---cEEEEEEEEEC----CeeeeecCCCCeEEEEccCCCcccceeee
Q 010278 319 DKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGF 389 (514)
Q Consensus 319 ~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~---~~~~V~si~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G~ 389 (514)
..- .-.|++..|||.+|++++||.|.+...+ ...+|..+..+ +.++++|.||++|+ +.|+. ++..|+
T Consensus 211 ~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVa--iaG~~--~~~igd 286 (603)
T COG1217 211 QLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVA--IAGLE--DINIGD 286 (603)
T ss_pred eeccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEE--EcCcc--cccccc
Confidence 653 4589999999999999999999988755 46788888776 67899999999999 57774 488999
Q ss_pred EEccCCC
Q 010278 390 VLSSVAK 396 (514)
Q Consensus 390 vl~~~~~ 396 (514)
++|++++
T Consensus 287 Ti~d~~~ 293 (603)
T COG1217 287 TICDPDN 293 (603)
T ss_pred cccCCCC
Confidence 9999884
No 37
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=1.7e-37 Score=334.26 Aligned_cols=278 Identities=23% Similarity=0.330 Sum_probs=227.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
..+||+|+||+|||||||+++|++.+|.+..... .-.++||..+.|+++|+|+......+.++++
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~---------------~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~ 68 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAE---------------TQERVMDSNDLEKERGITILAKNTAIKWNDY 68 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccc---------------cceeeeccccccccCceEEEEEEEEEecCCE
Confidence 5789999999999999999999998887654320 0127899999999999999999999999999
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHH
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 241 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~ 241 (514)
.++|||||||.+|...+.+.++.+|++|||||+.+|+. .||+.++..+..+++| +||++||||+..+
T Consensus 69 ~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~-------~qt~~~l~~a~~~gip-~IVviNKiD~~~a----- 135 (607)
T PRK10218 69 RINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPM-------PQTRFVTKKAFAYGLK-PIVVINKVDRPGA----- 135 (607)
T ss_pred EEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCcc-------HHHHHHHHHHHHcCCC-EEEEEECcCCCCC-----
Confidence 99999999999999999999999999999999999854 6999999999999999 7899999999543
Q ss_pred HHHHHHhhhhhhhhhccCcc-cCCeeEEeecccccccccccccc--CCCCCCCcccHHHHhhhccCCCCCCCCCceEEEE
Q 010278 242 RYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVDK--SLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 318 (514)
Q Consensus 242 ~~~~i~~~l~~~l~~~g~~~-~~~~~iipiSa~~G~gi~~l~~~--~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~i~ 318 (514)
+++++.+++..++..++... ..++|++++||++|.|..++... ...+| |..+++.+|+|.++.++||++.|+
T Consensus 136 ~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~L-----ld~Ii~~iP~P~~~~~~Pl~~~V~ 210 (607)
T PRK10218 136 RPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPL-----YQAIVDHVPAPDVDLDGPFQMQIS 210 (607)
T ss_pred chhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHH-----HHHHHHhCCCCCCCCCCCeEEEEE
Confidence 45566667776665554431 13589999999999975443210 11122 234567788888888999999999
Q ss_pred EEE--ccCCeEEEEEEeeeeeecCCEEEEecC-Cc--EEEEEEEEEC----CeeeeecCCCCeEEEEccCCCcccceeee
Q 010278 319 DKF--KDMGTVVMGKVESGSVREGDSLLVMPN-KA--QVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGF 389 (514)
Q Consensus 319 ~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~-~~--~~~V~si~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G~ 389 (514)
+++ ++.|++++|||.+|+|+.||.|++.+. +. ..+|.+|+.. +.++++|.|||+|++ .|+ .++..||
T Consensus 211 k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~~Gd 286 (607)
T PRK10218 211 QLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAI--TGL--GELNISD 286 (607)
T ss_pred eeEecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEE--ECc--cccccCc
Confidence 986 578999999999999999999999876 33 5788888754 678999999999995 555 4588999
Q ss_pred EEccCCC
Q 010278 390 VLSSVAK 396 (514)
Q Consensus 390 vl~~~~~ 396 (514)
+||++++
T Consensus 287 Tl~~~~~ 293 (607)
T PRK10218 287 TVCDTQN 293 (607)
T ss_pred EEecCCC
Confidence 9998763
No 38
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=2.1e-37 Score=335.28 Aligned_cols=268 Identities=24% Similarity=0.392 Sum_probs=221.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC-
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 159 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~- 159 (514)
++.+||+|+||+|||||||+++|++.+|.++.+.+ ..+++|..+.|+++|+|+......+.|.
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~----------------~~~~lD~~~~ErerGiTi~~~~v~~~~~~ 68 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREM----------------KAQVLDSMDLERERGITIKAQAVRLNYKA 68 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCccccc----------------ccccccCchHHhhcCCcccccEEEEEEEc
Confidence 46789999999999999999999999998775421 2478999999999999999988877764
Q ss_pred ----CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCC
Q 010278 160 ----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 160 ----~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~ 235 (514)
++.++|||||||.+|...+.++++.||++|||||+++|+ +.||.+++.++...++| +|+|+||+|+..
T Consensus 69 ~dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv-------~~qt~~~~~~~~~~~lp-iIvViNKiDl~~ 140 (600)
T PRK05433 69 KDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-------EAQTLANVYLALENDLE-IIPVLNKIDLPA 140 (600)
T ss_pred cCCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCC-------CHHHHHHHHHHHHCCCC-EEEEEECCCCCc
Confidence 588999999999999999999999999999999999984 36999999999889999 899999999843
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceE
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 315 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~ 315 (514)
.+ ++.+.+++... +++. ...++++||++|.|+.+++ ..+++.++.|..+.++||++
T Consensus 141 a~-----~~~v~~ei~~~---lg~~---~~~vi~iSAktG~GI~~Ll-------------~~I~~~lp~P~~~~~~pl~~ 196 (600)
T PRK05433 141 AD-----PERVKQEIEDV---IGID---ASDAVLVSAKTGIGIEEVL-------------EAIVERIPPPKGDPDAPLKA 196 (600)
T ss_pred cc-----HHHHHHHHHHH---hCCC---cceEEEEecCCCCCHHHHH-------------HHHHHhCccccCCCCCCceE
Confidence 22 23333444332 3332 2358999999999998842 23345678887788999999
Q ss_pred EEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC---CeeeeecCCCCeEEEEccCCC-cccceeee
Q 010278 316 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGIE-EEDILSGF 389 (514)
Q Consensus 316 ~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~---~~~v~~a~aG~~v~~~l~~~~-~~~i~~G~ 389 (514)
.|.+++ ++.|++++|||.+|+|+.||+|++.|.+...+|++|..+ ..+++++.|||++.+ +.|+. ..++++||
T Consensus 197 ~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~~~~~v~~~~aGdIg~i-~~~ik~~~~~~~Gd 275 (600)
T PRK05433 197 LIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTPKMVPVDELSAGEVGYI-IAGIKDVRDARVGD 275 (600)
T ss_pred EEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCCceEEEEEeeccCCCceECcEEcCCCEEEE-ecccccccccCCCC
Confidence 999988 678999999999999999999999999999999999875 578999999995554 45553 36799999
Q ss_pred EEccCCCC
Q 010278 390 VLSSVAKP 397 (514)
Q Consensus 390 vl~~~~~~ 397 (514)
+|++.+++
T Consensus 276 tl~~~~~~ 283 (600)
T PRK05433 276 TITLAKNP 283 (600)
T ss_pred EEECCCCc
Confidence 99987643
No 39
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=3.2e-37 Score=333.58 Aligned_cols=267 Identities=22% Similarity=0.378 Sum_probs=219.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC--
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 159 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~-- 159 (514)
..+||+++||+|||||||+++|++.+|.++.+. ...+.+|+.+.|+++|+|+......+.|.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~----------------~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~ 65 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISERE----------------MREQVLDSMDLERERGITIKAQAVRLNYKAK 65 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCcccc----------------ccccccCCChHHHhcCCCeeeeEEEEEEEcC
Confidence 478999999999999999999999998876532 12467899999999999999988877663
Q ss_pred ---CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCC
Q 010278 160 ---TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 160 ---~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~ 236 (514)
.+.++|||||||.+|...+.++++.||++|||+|+++|.. .|+.+++..+...++| +|+|+||+|+...
T Consensus 66 ~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~-------~qt~~~~~~~~~~~ip-iIiViNKiDl~~~ 137 (595)
T TIGR01393 66 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIE-------AQTLANVYLALENDLE-IIPVINKIDLPSA 137 (595)
T ss_pred CCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCC-------HhHHHHHHHHHHcCCC-EEEEEECcCCCcc
Confidence 2789999999999999999999999999999999999853 6899999888888998 8999999999432
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEE
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 316 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~ 316 (514)
. .+++.+++... +++. ...++++||++|.|+.++ |..+++.++.|..+.++||++.
T Consensus 138 --~---~~~~~~el~~~---lg~~---~~~vi~vSAktG~GI~~L-------------le~I~~~lp~p~~~~~~pl~~~ 193 (595)
T TIGR01393 138 --D---PERVKKEIEEV---IGLD---ASEAILASAKTGIGIEEI-------------LEAIVKRVPPPKGDPDAPLKAL 193 (595)
T ss_pred --C---HHHHHHHHHHH---hCCC---cceEEEeeccCCCCHHHH-------------HHHHHHhCCCCCCCCCCCeEEE
Confidence 2 22333344333 2332 135899999999999985 2234456788888889999999
Q ss_pred EEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECC---eeeeecCCCCeEEEEccCCC-cccceeeeE
Q 010278 317 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDD---NRVRHAGPGENLRIRLSGIE-EEDILSGFV 390 (514)
Q Consensus 317 i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~---~~v~~a~aG~~v~~~l~~~~-~~~i~~G~v 390 (514)
|.+++ ++.|++++|||.+|+|+.||+|.+.|.+...+|++|..++ .+++++.||| |++.+.|++ ..++++||+
T Consensus 194 V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGd-Ig~i~~~~~~~~~~~~Gdt 272 (595)
T TIGR01393 194 IFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKLTKTDELSAGE-VGYIIAGIKDVSDVRVGDT 272 (595)
T ss_pred EEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCceECCEEcCCC-EEEEeccccccCccCCCCE
Confidence 99998 5789999999999999999999999999999999999775 6789999999 555566664 367999999
Q ss_pred EccCCCC
Q 010278 391 LSSVAKP 397 (514)
Q Consensus 391 l~~~~~~ 397 (514)
|++.+++
T Consensus 273 l~~~~~~ 279 (595)
T TIGR01393 273 ITHVKNP 279 (595)
T ss_pred EECCCCc
Confidence 9987643
No 40
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.8e-37 Score=306.51 Aligned_cols=267 Identities=22% Similarity=0.380 Sum_probs=230.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
..++.+|++|+.|.|||||||.++|+..+|.++.|.|.. .++|....||+||||+......+.+
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~----------------Q~LDsMdiERERGITIKaq~v~l~Y 68 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRA----------------QVLDSMDIERERGITIKAQAVRLNY 68 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHH----------------HhhhhhhhHhhcCceEEeeEEEEEE
Confidence 356789999999999999999999999999999988754 5789999999999999998887766
Q ss_pred C-----CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 159 E-----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 159 ~-----~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
. .|.++|||||||-+|.-...+++..|.+|||||||++|+ +.||..+.+++...++. +|-|+||+|+
T Consensus 69 k~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGv-------eAQTlAN~YlAle~~Le-IiPViNKIDL 140 (603)
T COG0481 69 KAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-------EAQTLANVYLALENNLE-IIPVLNKIDL 140 (603)
T ss_pred EeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccch-------HHHHHHHHHHHHHcCcE-EEEeeecccC
Confidence 3 388999999999999999999999999999999999995 48999999999999998 9999999999
Q ss_pred CCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCc
Q 010278 234 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPF 313 (514)
Q Consensus 234 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~ 313 (514)
+.++ .+.++.++...+ |+. ....+.+||++|.|+.++ |..++..+|+|.-+.+.|+
T Consensus 141 P~Ad-----pervk~eIe~~i---Gid---~~dav~~SAKtG~gI~~i-------------Le~Iv~~iP~P~g~~~~pL 196 (603)
T COG0481 141 PAAD-----PERVKQEIEDII---GID---ASDAVLVSAKTGIGIEDV-------------LEAIVEKIPPPKGDPDAPL 196 (603)
T ss_pred CCCC-----HHHHHHHHHHHh---CCC---cchheeEecccCCCHHHH-------------HHHHHhhCCCCCCCCCCcc
Confidence 7665 334555555443 444 345788999999999985 5567888999999999999
Q ss_pred eEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC---CeeeeecCCCCeEEE--EccCCCcccce
Q 010278 314 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRI--RLSGIEEEDIL 386 (514)
Q Consensus 314 ~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~---~~~v~~a~aG~~v~~--~l~~~~~~~i~ 386 (514)
+..|.++| .-+|.|+..||..|+|++||+|.++..+....|..+..+ ..+.+...+|+..-+ +++. ..+.+
T Consensus 197 kALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP~~~~~~~L~aGeVG~~~a~iK~--v~d~~ 274 (603)
T COG0481 197 KALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTPKMVKVDELKAGEVGYIIAGIKD--VRDAR 274 (603)
T ss_pred eEEEEeccccccceEEEEEEEeeceecCCCEEEEEecCCEEEEEEEeeccCCccccccccCCceeEEEEeeee--cccCc
Confidence 99999988 468999999999999999999999999999999999876 456788999997666 4443 36689
Q ss_pred eeeEEccCC
Q 010278 387 SGFVLSSVA 395 (514)
Q Consensus 387 ~G~vl~~~~ 395 (514)
.||++...+
T Consensus 275 VGDTiT~~~ 283 (603)
T COG0481 275 VGDTITLAS 283 (603)
T ss_pred ccceEeccC
Confidence 999998544
No 41
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=100.00 E-value=4e-37 Score=293.14 Aligned_cols=207 Identities=36% Similarity=0.628 Sum_probs=188.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
+|+++||+|||||||+++|++.+|.+..+.+.+++++....++.++.+++.+|..+.|+++|+|++.....+++.+..++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999999999999988888888888888888888999999999999999999999999999999999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHH
Q 010278 165 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 244 (514)
Q Consensus 165 liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~ 244 (514)
|+|||||++|...+..++..+|++|+|||+..+.. .++++++.++...+.|++|+|+||||+ .++.+..++
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-------~~~~~~~~~~~~~~~~~iIvviNK~D~--~~~~~~~~~ 151 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-------EQTRRHSYILSLLGIRHVVVAVNKMDL--VDYSEEVFE 151 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-------HhHHHHHHHHHHcCCCcEEEEEEchhc--ccCCHHHHH
Confidence 99999999999999999999999999999998853 588889899988898778889999999 566677788
Q ss_pred HHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCC
Q 010278 245 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEIT 305 (514)
Q Consensus 245 ~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~ 305 (514)
.+..+++.+++.+++. ..+++|+||++|.|+.+.+. .++||.|+||+++|+.++++
T Consensus 152 ~i~~~~~~~~~~~~~~---~~~ii~iSA~~g~ni~~~~~--~~~w~~g~~~~~~~~~~~~~ 207 (208)
T cd04166 152 EIVADYLAFAAKLGIE---DITFIPISALDGDNVVSRSE--NMPWYSGPTLLEHLETVPIA 207 (208)
T ss_pred HHHHHHHHHHHHcCCC---CceEEEEeCCCCCCCccCCC--CCCCCCCCcHHHHHhcCCCC
Confidence 8889999999988874 46899999999999998764 59999999999999998775
No 42
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7e-36 Score=302.53 Aligned_cols=252 Identities=27% Similarity=0.379 Sum_probs=202.1
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEE
Q 010278 78 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 157 (514)
Q Consensus 78 ~~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~ 157 (514)
....|++.|.|+||||||||||+++|+...-. .....|||++++.+...
T Consensus 148 ~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VA-------------------------------A~E~GGITQhIGAF~V~ 196 (683)
T KOG1145|consen 148 LLEPRPPVVTIMGHVDHGKTTLLDALRKSSVA-------------------------------AGEAGGITQHIGAFTVT 196 (683)
T ss_pred hcCCCCCeEEEeecccCChhhHHHHHhhCcee-------------------------------hhhcCCccceeceEEEe
Confidence 34668999999999999999999999543322 33458999999998866
Q ss_pred e-CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCC
Q 010278 158 T-ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 158 ~-~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~ 236 (514)
. ++..++|+|||||..|..++.||+..+|+++|||.|.+|++ +||.|.+.+++..++| +||+|||+|.+++
T Consensus 197 ~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVm-------pQT~EaIkhAk~A~Vp-iVvAinKiDkp~a 268 (683)
T KOG1145|consen 197 LPSGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVM-------PQTLEAIKHAKSANVP-IVVAINKIDKPGA 268 (683)
T ss_pred cCCCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCcc-------HhHHHHHHHHHhcCCC-EEEEEeccCCCCC
Confidence 5 56899999999999999999999999999999999999987 7999999999999999 9999999999776
Q ss_pred CchHHHHHHHHhhhh---hhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCc
Q 010278 237 NWSKERYDEIESKMT---PFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPF 313 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~---~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~ 313 (514)
+.. .++.+|. -.+..+| +++++||+||++|+|+..|.+. ++ ++..+..-..++.+|+
T Consensus 269 ~pe-----kv~~eL~~~gi~~E~~G----GdVQvipiSAl~g~nl~~L~ea----------il-l~Ae~mdLkA~p~g~~ 328 (683)
T KOG1145|consen 269 NPE-----KVKRELLSQGIVVEDLG----GDVQVIPISALTGENLDLLEEA----------IL-LLAEVMDLKADPKGPA 328 (683)
T ss_pred CHH-----HHHHHHHHcCccHHHcC----CceeEEEeecccCCChHHHHHH----------HH-HHHHHhhcccCCCCCc
Confidence 532 2333322 2344444 5799999999999999986553 22 1122223345678999
Q ss_pred eEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC-CeeeeecCCCCeEEEEccCCCcccceeeeE
Q 010278 314 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGFV 390 (514)
Q Consensus 314 ~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~-~~~v~~a~aG~~v~~~l~~~~~~~i~~G~v 390 (514)
...|.++. +++|.+++..|..|+|+.|+.++. +...++||++..+ ++++++|.|++.|.+ .|+.. --..||.
T Consensus 329 eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~--G~~w~KVr~l~D~nGk~i~~A~Ps~pv~V--~Gwkd-lP~aGD~ 403 (683)
T KOG1145|consen 329 EGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVA--GKSWCKVRALFDHNGKPIDEATPSQPVEV--LGWKD-LPIAGDE 403 (683)
T ss_pred eEEEEEeeecCCccceeEEEEeccccccccEEEE--echhhhhhhhhhcCCCCccccCCCCceEe--ecccC-CCCCCce
Confidence 99999887 899999999999999999999998 6678999999877 789999999999996 33321 1235666
Q ss_pred Ecc
Q 010278 391 LSS 393 (514)
Q Consensus 391 l~~ 393 (514)
+..
T Consensus 404 vle 406 (683)
T KOG1145|consen 404 VLE 406 (683)
T ss_pred EEE
Confidence 543
No 43
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-35 Score=302.83 Aligned_cols=234 Identities=27% Similarity=0.425 Sum_probs=191.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC-
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 159 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~- 159 (514)
.|++.|+++||+|||||||++.++..+-. .....|||++++.+.+.++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va-------------------------------~~EaGGITQhIGA~~v~~~~ 51 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVA-------------------------------AGEAGGITQHIGAYQVPLDV 51 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccc-------------------------------cccCCceeeEeeeEEEEecc
Confidence 57899999999999999999999544322 3445899999999999985
Q ss_pred --CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010278 160 --TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 160 --~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~ 237 (514)
...++|||||||+.|..++.+|++.+|++|||||+++|++ +||.|.+.+++..|+| |||++||||++..+
T Consensus 52 ~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~-------pQTiEAI~hak~a~vP-~iVAiNKiDk~~~n 123 (509)
T COG0532 52 IKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVM-------PQTIEAINHAKAAGVP-IVVAINKIDKPEAN 123 (509)
T ss_pred CCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcc-------hhHHHHHHHHHHCCCC-EEEEEecccCCCCC
Confidence 4799999999999999999999999999999999999966 7999999999999999 99999999997554
Q ss_pred chHHHHHHHHhhhhhhhhhccCcc---cCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCce
Q 010278 238 WSKERYDEIESKMTPFLKASGYNV---KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFR 314 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~---~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~ 314 (514)
.. .+..++ .+.|+.+ ..++.|||+||++|+|+.+|++. .-.+......+.+++.+.+
T Consensus 124 p~-----~v~~el----~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~-----------ill~aev~elka~~~~~a~ 183 (509)
T COG0532 124 PD-----KVKQEL----QEYGLVPEEWGGDVIFVPVSAKTGEGIDELLEL-----------ILLLAEVLELKANPEGPAR 183 (509)
T ss_pred HH-----HHHHHH----HHcCCCHhhcCCceEEEEeeccCCCCHHHHHHH-----------HHHHHHHHhhhcCCCCcce
Confidence 33 233332 2234432 34689999999999999997652 1122222234456788999
Q ss_pred EEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC-CeeeeecCCCCeEEE
Q 010278 315 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRI 375 (514)
Q Consensus 315 ~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~-~~~v~~a~aG~~v~~ 375 (514)
..|.++. +|.|.+++..|++|+|+.||.|+++ ....+|+.+... ..++..+.++..+.+
T Consensus 184 gtviE~~~dkG~G~vatviv~~GtL~~GD~iv~g--~~~g~I~t~v~~~~~~i~~a~ps~~v~i 245 (509)
T COG0532 184 GTVIEVKLDKGLGPVATVIVQDGTLKKGDIIVAG--GEYGRVRTMVDDLGKPIKEAGPSKPVEI 245 (509)
T ss_pred EEEEEEEeccCCCceEEEEEecCeEecCCEEEEc--cCCCceEEeehhcCCCccccCCCCCeEE
Confidence 9999987 7999999999999999999999994 456788888775 678889998877775
No 44
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=9.1e-35 Score=312.92 Aligned_cols=250 Identities=30% Similarity=0.419 Sum_probs=195.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
...++++|+++||+|||||||+++|... .+. ....+|+|++.+...+.+
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~--~v~-----------------------------~~e~~GIT~~ig~~~v~~ 131 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKT--KVA-----------------------------QGEAGGITQHIGAYHVEN 131 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhC--Ccc-----------------------------cccCCceeecceEEEEEE
Confidence 3457789999999999999999999432 111 223478999999988888
Q ss_pred CCe-EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010278 159 ETT-RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 159 ~~~-~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~ 237 (514)
.+. .++|||||||++|..++.++++.+|++|||+|+++|.+ +||.+++.+++..++| +||++||+|++..+
T Consensus 132 ~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~-------~qT~e~i~~~~~~~vP-iIVviNKiDl~~~~ 203 (587)
T TIGR00487 132 EDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVM-------PQTIEAISHAKAANVP-IIVAINKIDKPEAN 203 (587)
T ss_pred CCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCC-------HhHHHHHHHHHHcCCC-EEEEEECcccccCC
Confidence 655 99999999999999999999999999999999999854 7999999999999999 99999999995443
Q ss_pred chHHHHHHHHhhhhhhhhhccCcc---cCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCce
Q 010278 238 WSKERYDEIESKMTPFLKASGYNV---KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFR 314 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~---~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~ 314 (514)
+ +++...+ ...++.. ....+++|+||++|.|+.++++. +. .+..+.....+++.|++
T Consensus 204 ~-----e~v~~~L----~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~----------I~-~~~~~~~l~~~~~~~~~ 263 (587)
T TIGR00487 204 P-----DRVKQEL----SEYGLVPEDWGGDTIFVPVSALTGDGIDELLDM----------IL-LQSEVEELKANPNGQAS 263 (587)
T ss_pred H-----HHHHHHH----HHhhhhHHhcCCCceEEEEECCCCCChHHHHHh----------hh-hhhhhccccCCCCCCce
Confidence 2 2222222 2222210 12468999999999999987553 21 11223333445678999
Q ss_pred EEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEE-CCeeeeecCCCCeEEEEccCCCcccceeeeEE
Q 010278 315 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYC-DDNRVRHAGPGENLRIRLSGIEEEDILSGFVL 391 (514)
Q Consensus 315 ~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~-~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl 391 (514)
++|.+++ ++.|++++|+|.+|+|++||.|+++|. ..+|++|+. ++..+++|.||+.|.+. |++. --..|+.+
T Consensus 264 ~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~~~~--~~kVr~l~~~~g~~v~~a~~g~~v~i~--Gl~~-~p~aGd~~ 338 (587)
T TIGR00487 264 GVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVVGAA--YGRVRAMIDENGKSVKEAGPSKPVEIL--GLSD-VPAAGDEF 338 (587)
T ss_pred eEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEECCC--ccEEEEEECCCCCCCCEECCCCEEEEe--CCCC-CCCCCCEE
Confidence 9999998 689999999999999999999999885 579999998 57789999999999863 4432 11578887
Q ss_pred c
Q 010278 392 S 392 (514)
Q Consensus 392 ~ 392 (514)
.
T Consensus 339 ~ 339 (587)
T TIGR00487 339 I 339 (587)
T ss_pred E
Confidence 6
No 45
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=9.8e-35 Score=319.23 Aligned_cols=250 Identities=27% Similarity=0.412 Sum_probs=198.2
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
...++++|+++||+|||||||+++|+. +.+. .+..+|+|++.+.+.+.+
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~--~~v~-----------------------------~~e~~GIT~~iga~~v~~ 334 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRK--TNVA-----------------------------AGEAGGITQHIGAYQVET 334 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHh--CCcc-----------------------------ccccCceeeeccEEEEEE
Confidence 356889999999999999999999943 1111 223479999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
+++.++|||||||++|..++.++++.+|++|||||+++|++ +||.+++.++...++| +||++||||+.. +
T Consensus 335 ~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~-------~qT~e~i~~a~~~~vP-iIVviNKiDl~~--a 404 (787)
T PRK05306 335 NGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVM-------PQTIEAINHAKAAGVP-IIVAINKIDKPG--A 404 (787)
T ss_pred CCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCC-------HhHHHHHHHHHhcCCc-EEEEEECccccc--c
Confidence 99999999999999999999999999999999999999954 7999999999999999 999999999943 3
Q ss_pred hHHHHHHHHhhhhh---hhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceE
Q 010278 239 SKERYDEIESKMTP---FLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 315 (514)
Q Consensus 239 ~~~~~~~i~~~l~~---~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~ 315 (514)
+.. .+..++.. +...+| .+++++|+||++|.|+.++++. |....+.+ ....+++.|+++
T Consensus 405 ~~e---~V~~eL~~~~~~~e~~g----~~vp~vpvSAktG~GI~eLle~----------I~~~~e~~-~l~~~~~~~~~g 466 (787)
T PRK05306 405 NPD---RVKQELSEYGLVPEEWG----GDTIFVPVSAKTGEGIDELLEA----------ILLQAEVL-ELKANPDRPARG 466 (787)
T ss_pred CHH---HHHHHHHHhcccHHHhC----CCceEEEEeCCCCCCchHHHHh----------hhhhhhhh-hcccCCCCCcEE
Confidence 322 23332221 122222 2479999999999999997653 11111111 233456789999
Q ss_pred EEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC-CeeeeecCCCCeEEEEccCCCcccc-eeeeEE
Q 010278 316 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDI-LSGFVL 391 (514)
Q Consensus 316 ~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~-~~~v~~a~aG~~v~~~l~~~~~~~i-~~G~vl 391 (514)
.|.+++ ++.|++++|+|.+|+|+.||.|++++ ...+|++|+.. +.++.+|.||+.|.+. |++. + ..||+|
T Consensus 467 ~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~g~--~~gkVr~m~~~~~~~v~~A~pGd~V~I~--gl~~--~p~~Gd~l 540 (787)
T PRK05306 467 TVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAGT--TYGRVRAMVDDNGKRVKEAGPSTPVEIL--GLSG--VPQAGDEF 540 (787)
T ss_pred EEEEEEEcCCCeEEEEEEEecCeEecCCEEEECC--cEEEEEEEECCCCCCCCEEcCCCeEEEe--CCCC--CCCCCCEE
Confidence 999987 68999999999999999999999964 57899999985 7799999999999963 3332 3 589998
Q ss_pred cc
Q 010278 392 SS 393 (514)
Q Consensus 392 ~~ 393 (514)
+.
T Consensus 541 ~~ 542 (787)
T PRK05306 541 VV 542 (787)
T ss_pred EE
Confidence 84
No 46
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=5e-35 Score=274.91 Aligned_cols=192 Identities=32% Similarity=0.484 Sum_probs=165.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
++++|+++||+|||||||+++|++... ..|+..+...+.+|..++|+++|+|++.....|+++++
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~ 65 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANR 65 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHH---------------hcccccccccccccCChhhhhcCccEEeeeeEecCCCe
Confidence 358999999999999999999987642 12332222235789999999999999999999999999
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHH
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 241 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~ 241 (514)
+++|+|||||.+|+..+.+++..+|++++|||+..|. ..|+++++.++..+++|++|+++||||+ .+ .++
T Consensus 66 ~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~-------~~~~~~~~~~~~~~~~~~iIvviNK~D~--~~-~~~ 135 (195)
T cd01884 66 HYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGP-------MPQTREHLLLARQVGVPYIVVFLNKADM--VD-DEE 135 (195)
T ss_pred EEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCC-------cHHHHHHHHHHHHcCCCcEEEEEeCCCC--CC-cHH
Confidence 9999999999999999999999999999999999985 3799999999999999878899999999 43 456
Q ss_pred HHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCC-cccHHHHhhhccC
Q 010278 242 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN-GPCLFEALDRIEI 304 (514)
Q Consensus 242 ~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~-g~tL~~~l~~l~~ 304 (514)
.++.+.+++..+|+.+|++. .++|++|+||++|.|+.+ .++||+ +++|+++|+++.+
T Consensus 136 ~~~~~~~~i~~~l~~~g~~~-~~v~iipiSa~~g~n~~~-----~~~w~~~~~~l~~~l~~~~~ 193 (195)
T cd01884 136 LLELVEMEVRELLSKYGFDG-DNTPIVRGSALKALEGDD-----PNKWVKKILELLDALDSYIP 193 (195)
T ss_pred HHHHHHHHHHHHHHHhcccc-cCCeEEEeeCccccCCCC-----CCcchhcHhHHHHHHHhCCC
Confidence 77888899999999999863 368999999999999865 379997 7999999987543
No 47
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=4.2e-33 Score=310.09 Aligned_cols=289 Identities=22% Similarity=0.317 Sum_probs=221.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
...+.+||+++||+|||||||+++|++.+|.++.+. .| .++.+|..+.|++||+|++.+...+.|
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~rgiTi~~~~~~~~~ 80 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEEL----------AG-----EQLALDFDEEEQARGITIKAANVSMVH 80 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhh----------cC-----cceecCccHHHHHhhhhhhccceEEEE
Confidence 456789999999999999999999999999877532 12 146799999999999999998877665
Q ss_pred ----CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCC
Q 010278 159 ----ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 234 (514)
Q Consensus 159 ----~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~ 234 (514)
.++.++|||||||.+|...+.++++.+|++|+|||+..|+ +.||+.++.++...++| .|+++||||+.
T Consensus 81 ~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~-------~~~t~~~~~~~~~~~~~-~iv~iNK~D~~ 152 (731)
T PRK07560 81 EYEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGV-------MPQTETVLRQALRERVK-PVLFINKVDRL 152 (731)
T ss_pred EecCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCC-------CccHHHHHHHHHHcCCC-eEEEEECchhh
Confidence 4788999999999999999999999999999999999995 37999999999999999 68999999985
Q ss_pred CCC------chHHHHHHHHhhhhhhhhhcc---------CcccCCeeEEeeccccccccccc--c----------cc---
Q 010278 235 TVN------WSKERYDEIESKMTPFLKASG---------YNVKKDVQFLPISGLMGLNMKTR--V----------DK--- 284 (514)
Q Consensus 235 ~~~------~~~~~~~~i~~~l~~~l~~~g---------~~~~~~~~iipiSa~~G~gi~~l--~----------~~--- 284 (514)
..+ ..+.++.++.+++..++..+. +.+. +-.++..|++.++++... . +.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~-~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~ 231 (731)
T PRK07560 153 IKELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVE-DGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEK 231 (731)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCC-CCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhc
Confidence 433 334566666677766666442 1111 124667799988877510 0 00
Q ss_pred ----CCCCCCCc-ccHHHHh-hhccCCC-------------------------CCCCCCceEEEEEEE--ccCCeEEEEE
Q 010278 285 ----SLCPWWNG-PCLFEAL-DRIEITP-------------------------RDPNGPFRMPIIDKF--KDMGTVVMGK 331 (514)
Q Consensus 285 ----~~~~w~~g-~tL~~~l-~~l~~~~-------------------------~~~~~p~~~~i~~~~--~~~G~v~~g~ 331 (514)
.+..|+.- ..|++.+ +.+|.|. ++.+.|+.+.|.+++ +..|.+++||
T Consensus 232 ~~~~~l~~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~R 311 (731)
T PRK07560 232 GKQKELAEKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGR 311 (731)
T ss_pred CCHHHHHhhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEE
Confidence 00001000 1244433 3356653 133568889998887 4679999999
Q ss_pred EeeeeeecCCEEEEecCCcEEEEEEEEEC----CeeeeecCCCCeEEEEccCCCcccceeeeEEccCC
Q 010278 332 VESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 395 (514)
Q Consensus 332 v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~ 395 (514)
|.+|+|+.||.|++.+.+...+|+.|+.. ..++++|.||++|++ .|++ ++.+|++|+.+.
T Consensus 312 V~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i--~gl~--~~~~GdtL~~~~ 375 (731)
T PRK07560 312 VFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAV--TGLK--DARAGETVVSVE 375 (731)
T ss_pred EEEeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEE--Eccc--ccccCCEEeCCC
Confidence 99999999999999998888899999765 568999999999997 4553 477899998765
No 48
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=2e-32 Score=303.06 Aligned_cols=281 Identities=23% Similarity=0.269 Sum_probs=211.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.+||+|+||+|+|||||+++|++.+|.+..- |+.+ ..++.+|+.+.|+++|+|++.....+.|.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~------------g~v~-~~~~~~D~~~~E~~rg~ti~~~~~~~~~~ 73 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKI------------GEVH-DGAATMDWMEQEQERGITITSAATTCFWK 73 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCcccc------------cccc-CCcccCCCCHHHHhCCCCEeccEEEEEEC
Confidence 4468999999999999999999999998876421 1111 13678999999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~ 239 (514)
+++++|+|||||.+|...+.++++.+|++||||||..|+ +.||++++.++..+|+| +|+++||||+...+
T Consensus 74 ~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~-------~~qt~~~~~~~~~~~~p-~iv~vNK~D~~~~~-- 143 (693)
T PRK00007 74 DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGV-------EPQSETVWRQADKYKVP-RIAFVNKMDRTGAD-- 143 (693)
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCc-------chhhHHHHHHHHHcCCC-EEEEEECCCCCCCC--
Confidence 999999999999999999999999999999999999995 47999999999999999 68999999995443
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccc-cccccccccCCCCC-----------------------------
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG-LNMKTRVDKSLCPW----------------------------- 289 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G-~gi~~l~~~~~~~w----------------------------- 289 (514)
+.++.++++..+...- ...++|+|+..| .|+.+++......|
T Consensus 144 ---~~~~~~~i~~~l~~~~-----~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 215 (693)
T PRK00007 144 ---FYRVVEQIKDRLGANP-----VPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKL 215 (693)
T ss_pred ---HHHHHHHHHHHhCCCe-----eeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHH
Confidence 3344445544443221 235667777665 23322221111111
Q ss_pred ------------------------------------------CCc--------ccHHHH-hhhccCCCC-----------
Q 010278 290 ------------------------------------------WNG--------PCLFEA-LDRIEITPR----------- 307 (514)
Q Consensus 290 ------------------------------------------~~g--------~tL~~~-l~~l~~~~~----------- 307 (514)
+.| ..|++. +..+|.|..
T Consensus 216 ~e~v~e~dd~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~ 295 (693)
T PRK00007 216 IEAAAEADEELMEKYLEGEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDG 295 (693)
T ss_pred HHHHHccCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCc
Confidence 101 123442 334555531
Q ss_pred ---------CCCCCceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC----CeeeeecCCCCe
Q 010278 308 ---------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGEN 372 (514)
Q Consensus 308 ---------~~~~p~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~ 372 (514)
+++.|+.+.|.++. +..|.++++||+||+|+.||+|+....+...+|..|+.. ..++++|.||++
T Consensus 296 ~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI 375 (693)
T PRK00007 296 EEEEVERKASDDEPFSALAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDI 375 (693)
T ss_pred cccceeecCCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcE
Confidence 23568889999887 356999999999999999999987656667788888765 568999999999
Q ss_pred EEEEccCCCcccceeeeEEccCC
Q 010278 373 LRIRLSGIEEEDILSGFVLSSVA 395 (514)
Q Consensus 373 v~~~l~~~~~~~i~~G~vl~~~~ 395 (514)
|++ .|++ +++.|++|++++
T Consensus 376 ~~i--~gl~--~~~~GdtL~~~~ 394 (693)
T PRK00007 376 AAA--VGLK--DTTTGDTLCDEK 394 (693)
T ss_pred EEE--eCCc--cCCcCCEeeCCC
Confidence 996 5554 368999998755
No 49
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-32 Score=295.10 Aligned_cols=277 Identities=22% Similarity=0.303 Sum_probs=213.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.+||+|+||+|||||||+.+||+.+|.+... |. -...+..||+.+.|++||+|+..+...+.|.
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~------------G~-v~~g~~~~D~~e~EqeRGITI~saa~s~~~~ 73 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKI------------GE-VHDGAATMDWMEQEQERGITITSAATTLFWK 73 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCC------------cc-ccCCCccCCCcHHHHhcCCEEeeeeeEEEEc
Confidence 4578999999999999999999999999987752 11 1123568999999999999999999999999
Q ss_pred C-eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 160 T-TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 160 ~-~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
+ +.|+|||||||-+|...+.++++.+|+||+||||..|+. +||+..++++...++| .|++|||||+...++
T Consensus 74 ~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~-------~QTEtv~rqa~~~~vp-~i~fiNKmDR~~a~~ 145 (697)
T COG0480 74 GDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVE-------PQTETVWRQADKYGVP-RILFVNKMDRLGADF 145 (697)
T ss_pred CceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCee-------ecHHHHHHHHhhcCCC-eEEEEECccccccCh
Confidence 6 999999999999999999999999999999999999965 7999999999999999 678999999976664
Q ss_pred hHHHHHHHHhhhhh------------------------------------------------------------------
Q 010278 239 SKERYDEIESKMTP------------------------------------------------------------------ 252 (514)
Q Consensus 239 ~~~~~~~i~~~l~~------------------------------------------------------------------ 252 (514)
.. ..+++...+..
T Consensus 146 ~~-~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l 224 (697)
T COG0480 146 YL-VVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEEL 224 (697)
T ss_pred hh-hHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHH
Confidence 21 11111111111
Q ss_pred ---hhhhcc-------------CcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCC----------
Q 010278 253 ---FLKASG-------------YNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITP---------- 306 (514)
Q Consensus 253 ---~l~~~g-------------~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~---------- 306 (514)
+|.... .......|+++-||.++.|+..+++ ..++.+|.|.
T Consensus 225 ~e~yl~g~e~~~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~lLd-------------av~~~lPsP~e~~~~~g~~~ 291 (697)
T COG0480 225 MEKYLEGEEPTEEEIKKALRKGTIAGKIVPVLCGSAFKNKGVQPLLD-------------AVVDYLPSPLDVPPIKGDLD 291 (697)
T ss_pred HHHHhcCCCccHHHHHHHHHHhhhccceeeEEeeecccCCcHHHHHH-------------HHHHHCCChhhcccccccCC
Confidence 000000 0001134666667766666655422 2334455441
Q ss_pred ----------CCCCCCceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC----CeeeeecCCC
Q 010278 307 ----------RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPG 370 (514)
Q Consensus 307 ----------~~~~~p~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG 370 (514)
.+.+.|+.+.+..+. +..|.+.++||+||+|+.|+.++....+...+|..|... +.+++++.||
T Consensus 292 ~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG 371 (697)
T COG0480 292 DEIEKAVLRKASDEGPLSALVFKIMTDPFVGKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAG 371 (697)
T ss_pred ccccchhcccCCCCCceEEEEEEeEecCCCCeEEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCc
Confidence 134688999998887 457898889999999999999999888888999999765 4689999999
Q ss_pred CeEEEEccCCCcccceeeeEEccCC
Q 010278 371 ENLRIRLSGIEEEDILSGFVLSSVA 395 (514)
Q Consensus 371 ~~v~~~l~~~~~~~i~~G~vl~~~~ 395 (514)
+++++ .|++. ...|++||+.+
T Consensus 372 ~I~a~--~Gl~~--~~tGdTl~~~~ 392 (697)
T COG0480 372 DIVAL--VGLKD--ATTGDTLCDEN 392 (697)
T ss_pred cEEEE--Ecccc--cccCCeeecCC
Confidence 99995 55544 58999999766
No 50
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=1.9e-32 Score=298.48 Aligned_cols=251 Identities=25% Similarity=0.378 Sum_probs=193.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..++++|+++||+|||||||+++|+..... ..+.+|+|++.+.+.+.+.
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~-------------------------------~~e~~GiTq~i~~~~v~~~ 289 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIA-------------------------------QKEAGGITQKIGAYEVEFE 289 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCc-------------------------------cccCCccccccceEEEEEE
Confidence 467899999999999999999999543322 2334789988887766653
Q ss_pred ----CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCC
Q 010278 160 ----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 160 ----~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~ 235 (514)
++.|+|||||||+.|..++.+++..+|++||||||.+|.. +||.+++..+...++| +|||+||+|++.
T Consensus 290 ~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~-------~QT~E~I~~~k~~~iP-iIVViNKiDl~~ 361 (742)
T CHL00189 290 YKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVK-------PQTIEAINYIQAANVP-IIVAINKIDKAN 361 (742)
T ss_pred ecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCC-------hhhHHHHHHHHhcCce-EEEEEECCCccc
Confidence 5899999999999999999999999999999999999854 7999999999999999 999999999943
Q ss_pred CCchHHHHHHHHhhhhhh---hhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCC
Q 010278 236 VNWSKERYDEIESKMTPF---LKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGP 312 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~---l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p 312 (514)
.+ ++.+..++..+ ...+| ..++++++||++|.|+.++++. |.... .+.....+++.|
T Consensus 362 ~~-----~e~v~~eL~~~~ll~e~~g----~~vpvv~VSAktG~GIdeLle~----------I~~l~-e~~~lk~~~~~~ 421 (742)
T CHL00189 362 AN-----TERIKQQLAKYNLIPEKWG----GDTPMIPISASQGTNIDKLLET----------ILLLA-EIEDLKADPTQL 421 (742)
T ss_pred cC-----HHHHHHHHHHhccchHhhC----CCceEEEEECCCCCCHHHHHHh----------hhhhh-hhhcccCCCCCC
Confidence 22 23333333221 12222 2479999999999999987552 22111 122223345678
Q ss_pred ceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC-CeeeeecCCCCeEEEEccCCCcccceeee
Q 010278 313 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGF 389 (514)
Q Consensus 313 ~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~-~~~v~~a~aG~~v~~~l~~~~~~~i~~G~ 389 (514)
+...|.+++ ++.|++++|+|.+|+|+.||.|+++| ..++|++|... +.++.+|.||++|.+ .|++ .....|+
T Consensus 422 ~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD~vv~g~--~~gkVr~m~~~~~~~v~~a~pgdiV~I--~gl~-~~~~~Gd 496 (742)
T CHL00189 422 AQGIILEAHLDKTKGPVATILVQNGTLHIGDIIVIGT--SYAKIRGMINSLGNKINLATPSSVVEI--WGLS-SVPATGE 496 (742)
T ss_pred ceEEEEEEEEcCCCceEEEEEEEcCEEecCCEEEECC--cceEEEEEEcCCCcCccEEcCCCceEe--cCcc-cCCCCCC
Confidence 888888876 68999999999999999999999987 46899999854 789999999999985 4442 2345688
Q ss_pred EEccC
Q 010278 390 VLSSV 394 (514)
Q Consensus 390 vl~~~ 394 (514)
.|.-.
T Consensus 497 ~l~v~ 501 (742)
T CHL00189 497 HFQVF 501 (742)
T ss_pred EEEEe
Confidence 77543
No 51
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=6e-32 Score=299.41 Aligned_cols=272 Identities=21% Similarity=0.257 Sum_probs=207.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.+||+|+||+|+|||||+++|++.+|.+... |+.+ ...+.+|..+.|+++|+|++.....++|+
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~------------~~v~-~~~~~~D~~~~E~~rgiti~~~~~~~~~~ 71 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKI------------GEVH-DGAATMDWMEQEQERGITITSAATTCFWK 71 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCcccc------------cccc-CCccccCCChhHhhcCCCccceeEEEEEC
Confidence 3468999999999999999999999988875421 1111 13578999999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~ 239 (514)
+++++|+|||||.+|..++.++++.+|++|+||||..|+ +.||++++.++...++| +|+++||||+...+
T Consensus 72 ~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~-------~~qt~~i~~~~~~~~~p-~iv~iNK~D~~~~~-- 141 (691)
T PRK12739 72 GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGV-------EPQSETVWRQADKYGVP-RIVFVNKMDRIGAD-- 141 (691)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCC-------CHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC--
Confidence 999999999999999999999999999999999999984 47999999999999999 78999999995433
Q ss_pred HHHHHHHHhhhhhhhhhccCc-----------------------------------------------------------
Q 010278 240 KERYDEIESKMTPFLKASGYN----------------------------------------------------------- 260 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~----------------------------------------------------------- 260 (514)
+..+.++++..+....+.
T Consensus 142 ---~~~~~~~i~~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~ 218 (691)
T PRK12739 142 ---FFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVA 218 (691)
T ss_pred ---HHHHHHHHHHHhCCCceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhh
Confidence 223333333333211000
Q ss_pred ------------------------------ccCCeeEEeeccccccccccccccCCCCCCCcccHHHH-hhhccCCC---
Q 010278 261 ------------------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEA-LDRIEITP--- 306 (514)
Q Consensus 261 ------------------------------~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~-l~~l~~~~--- 306 (514)
...-+|++..||+++.|+.. |++. +..+|.|.
T Consensus 219 e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~--------------LLd~I~~~lPsP~~~~ 284 (691)
T PRK12739 219 EVDEELMEKYLEGEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGVQP--------------LLDAVVDYLPSPLDVP 284 (691)
T ss_pred hcCHHHHHHHhccCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHH--------------HHHHHHHHCCChhhcc
Confidence 00113444455555555554 3333 33455542
Q ss_pred ----------------CCCCCCceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC----Ceee
Q 010278 307 ----------------RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRV 364 (514)
Q Consensus 307 ----------------~~~~~p~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v 364 (514)
++++.|+.+.|.+++ +..|.++++||+||+|+.||.|+....+...+|..|+.. ..++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v 364 (691)
T PRK12739 285 AIKGINPDTEEEIERPASDDEPFAALAFKIMTDPFVGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEI 364 (691)
T ss_pred ccccccCCCCcceeeccCCCCCeEEEEEEeeeCCCCCeEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccc
Confidence 134678999999887 357999999999999999999987766677788888654 4689
Q ss_pred eecCCCCeEEEEccCCCcccceeeeEEccCC
Q 010278 365 RHAGPGENLRIRLSGIEEEDILSGFVLSSVA 395 (514)
Q Consensus 365 ~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~ 395 (514)
+++.||+++++ .|++. ++.|++|++..
T Consensus 365 ~~~~aGdI~~i--~gl~~--~~~gdtl~~~~ 391 (691)
T PRK12739 365 KEVYAGDIAAA--VGLKD--TTTGDTLCDEK 391 (691)
T ss_pred cccCCCCEEEE--eCCCc--ccCCCEEeCCC
Confidence 99999999996 35543 78999998754
No 52
>PRK04004 translation initiation factor IF-2; Validated
Probab=100.00 E-value=4.8e-32 Score=292.51 Aligned_cols=260 Identities=24% Similarity=0.357 Sum_probs=196.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..|++.|+++||+|||||||+++|...... ....+|+|.+.+...+.+.
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~-------------------------------~~~~g~itq~ig~~~~~~~ 51 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVA-------------------------------AKEAGGITQHIGATEVPID 51 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccc-------------------------------cCCCCceEEeeceeecccc
Confidence 457889999999999999999999533211 1222556666655443321
Q ss_pred C------------------eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCC
Q 010278 160 T------------------TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV 221 (514)
Q Consensus 160 ~------------------~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~v 221 (514)
. ..++|+|||||++|...+.++++.+|++|||+|+++|. .+|+.+++.++...++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~-------~~qt~e~i~~~~~~~v 124 (586)
T PRK04004 52 VIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGF-------QPQTIEAINILKRRKT 124 (586)
T ss_pred ccccccceeccccccccccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCC-------CHhHHHHHHHHHHcCC
Confidence 0 13799999999999999999999999999999999984 3799999999999999
Q ss_pred CeEEEEEeeccCCCCCch------------------HHHHHHHHhhhhhhhhhccCcc---------cCCeeEEeecccc
Q 010278 222 TKLLLVVNKMDDHTVNWS------------------KERYDEIESKMTPFLKASGYNV---------KKDVQFLPISGLM 274 (514)
Q Consensus 222 p~~IvviNK~D~~~~~~~------------------~~~~~~i~~~l~~~l~~~g~~~---------~~~~~iipiSa~~ 274 (514)
| +++++||||+. ..|. +..|++...++..+|...|+.. ..+++++|+||++
T Consensus 125 p-iIvviNK~D~~-~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~t 202 (586)
T PRK04004 125 P-FVVAANKIDRI-PGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKT 202 (586)
T ss_pred C-EEEEEECcCCc-hhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCC
Confidence 9 99999999984 2344 3456666677777788777653 2468999999999
Q ss_pred ccccccccccCCCCCCCcccHHHHhhh-cc-CCCCCCCCCceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCc
Q 010278 275 GLNMKTRVDKSLCPWWNGPCLFEALDR-IE-ITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKA 350 (514)
Q Consensus 275 G~gi~~l~~~~~~~w~~g~tL~~~l~~-l~-~~~~~~~~p~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~ 350 (514)
|.|+.++++. +...++. ++ ....+.+.|++++|.+++ +|.|++++|+|.+|+|++||.|+++|.+.
T Consensus 203 GeGi~dLl~~----------i~~~~~~~l~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~ 272 (586)
T PRK04004 203 GEGIPDLLMV----------LAGLAQRYLEERLKIDVEGPGKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDG 272 (586)
T ss_pred CCChHHHHHH----------HHHHHHHHHHHhhccCCCCCeEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCC
Confidence 9999987543 2222221 22 123456789999999998 78999999999999999999999999874
Q ss_pred --EEEEEEEEEC------------CeeeeecCCCCeEEEEccCCCcccceeeeEE
Q 010278 351 --QVKVLAIYCD------------DNRVRHAGPGENLRIRLSGIEEEDILSGFVL 391 (514)
Q Consensus 351 --~~~V~si~~~------------~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl 391 (514)
.++|++|..+ ...+++|.|...|.+...|++. +..|+-+
T Consensus 273 ~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~--~~~g~~~ 325 (586)
T PRK04004 273 PIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLED--ALAGSPL 325 (586)
T ss_pred cceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccc--cCCCCeE
Confidence 5799999976 2567778888777764445443 2445543
No 53
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=2.6e-31 Score=283.41 Aligned_cols=280 Identities=20% Similarity=0.245 Sum_probs=211.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+.+||+|+||+|||||||+++|++..|.+...... .+++. .....+|..+.|+++|+|+......+++.+
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v--------~~~~~-~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~ 78 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTV--------KGRKS-GRHATSDWMEMEKQRGISVTSSVMQFPYRD 78 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCcccccee--------ecccc-CccccCCCcHHHHhhCCceeeeeEEEEECC
Confidence 467899999999999999999999988877543200 01110 112247888999999999999999999999
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~ 240 (514)
+.++|||||||.+|...+.++++.+|++|+|||+..|+ +.|+++.+.++...++| +++++||||+...+..
T Consensus 79 ~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-------~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~~~- 149 (526)
T PRK00741 79 CLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGV-------EPQTRKLMEVCRLRDTP-IFTFINKLDRDGREPL- 149 (526)
T ss_pred EEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCC-------CHHHHHHHHHHHhcCCC-EEEEEECCcccccCHH-
Confidence 99999999999999999999999999999999999984 36899999999999999 8999999999655421
Q ss_pred HHHHHHHhhhhhh-----------------------------------------------------hhh---------c-
Q 010278 241 ERYDEIESKMTPF-----------------------------------------------------LKA---------S- 257 (514)
Q Consensus 241 ~~~~~i~~~l~~~-----------------------------------------------------l~~---------~- 257 (514)
+.++++.+.+..- |.. +
T Consensus 150 ~~l~~i~~~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~le 229 (526)
T PRK00741 150 ELLDEIEEVLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELE 229 (526)
T ss_pred HHHHHHHHHhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHH
Confidence 2223332222110 000 0
Q ss_pred ------------cCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCC---------CCCCCceEE
Q 010278 258 ------------GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR---------DPNGPFRMP 316 (514)
Q Consensus 258 ------------g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~---------~~~~p~~~~ 316 (514)
.+....-+|++..||+++.|+..+++ .+++.+|.|.. ..+.+|...
T Consensus 230 l~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd-------------~i~~~~P~P~~~~~~~~~~~~~~~~~~~~ 296 (526)
T PRK00741 230 LVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEFLD-------------AFVEWAPAPQPRQTDEREVEPTEEKFSGF 296 (526)
T ss_pred hhhhcccchhHHHHhcCCeEEEEEeecccCcCHHHHHH-------------HHHHHCCCCCcccccceeecCCCCceEEE
Confidence 00001126888889999999987522 24445565532 124568888
Q ss_pred EEEEE-----ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC----CeeeeecCCCCeEEEEccCCCccccee
Q 010278 317 IIDKF-----KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILS 387 (514)
Q Consensus 317 i~~~~-----~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~ 387 (514)
|+.+. +.+|+++++||.||+|+.|+.|+....++..++..++.. +.++++|.|||++++ .++ .+++.
T Consensus 297 VFK~~~~m~~~~~grlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v--~~l--~~~~~ 372 (526)
T PRK00741 297 VFKIQANMDPKHRDRIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGL--HNH--GTIQI 372 (526)
T ss_pred EEEEEecCCCCcCceEEEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEE--ECC--CCCcc
Confidence 88876 357999999999999999999999888888888887654 578999999999995 443 45889
Q ss_pred eeEEccCC
Q 010278 388 GFVLSSVA 395 (514)
Q Consensus 388 G~vl~~~~ 395 (514)
||+|+..+
T Consensus 373 GDTL~~~~ 380 (526)
T PRK00741 373 GDTFTQGE 380 (526)
T ss_pred CCCccCCC
Confidence 99998755
No 54
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=100.00 E-value=1.7e-31 Score=287.01 Aligned_cols=259 Identities=21% Similarity=0.377 Sum_probs=188.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.|++.|+++||+|||||||+++|++.... ....+|+|.+.+...+.+..
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~-------------------------------~~e~ggiTq~iG~~~v~~~~ 50 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVA-------------------------------KREAGGITQHIGATEIPMDV 50 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccc-------------------------------cccCCceecccCeeEeeecc
Confidence 46789999999999999999999643211 12235677776665554321
Q ss_pred ------------------eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCC
Q 010278 161 ------------------TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT 222 (514)
Q Consensus 161 ------------------~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp 222 (514)
..++|+|||||+.|...+.++++.+|++|||+|+++|.. +|+.+++.+++..++|
T Consensus 51 ~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~-------~qt~e~i~~l~~~~vp 123 (590)
T TIGR00491 51 IEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFK-------PQTQEALNILRMYKTP 123 (590)
T ss_pred ccccccccccccccccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCC-------HhHHHHHHHHHHcCCC
Confidence 238999999999999999999999999999999999843 6999999999999999
Q ss_pred eEEEEEeeccCCCCCchH------------------HHHHHHHhhhhhhhhhccCcc---------cCCeeEEeeccccc
Q 010278 223 KLLLVVNKMDDHTVNWSK------------------ERYDEIESKMTPFLKASGYNV---------KKDVQFLPISGLMG 275 (514)
Q Consensus 223 ~~IvviNK~D~~~~~~~~------------------~~~~~i~~~l~~~l~~~g~~~---------~~~~~iipiSa~~G 275 (514)
+|+++||+|+.. .|.. ..+++....+...|.+.|+.. ...++++|+||++|
T Consensus 124 -iIVv~NK~Dl~~-~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tG 201 (590)
T TIGR00491 124 -FVVAANKIDRIP-GWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITG 201 (590)
T ss_pred -EEEEEECCCccc-hhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCC
Confidence 999999999942 3421 011112222223345555532 24689999999999
Q ss_pred cccccccccCCCCCCCcccHHHHhhh-cc-CCCCCCCCCceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCc-
Q 010278 276 LNMKTRVDKSLCPWWNGPCLFEALDR-IE-ITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKA- 350 (514)
Q Consensus 276 ~gi~~l~~~~~~~w~~g~tL~~~l~~-l~-~~~~~~~~p~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~- 350 (514)
+|+.+|... |..+... ++ ....+.++|++++|.+++ +|.|++++|+|.+|+|++||.|+++|.+.
T Consensus 202 eGideLl~~----------l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~ 271 (590)
T TIGR00491 202 EGIPELLTM----------LAGLAQQYLEEQLKLEEEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDV 271 (590)
T ss_pred CChhHHHHH----------HHHHHHHHhhhhhccCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCc
Confidence 999997542 2222221 21 123456789999999999 68999999999999999999999999874
Q ss_pred -EEEEEEEEECC------------eeeeecCCCCeEEEEccCCCcccceeeeEE
Q 010278 351 -QVKVLAIYCDD------------NRVRHAGPGENLRIRLSGIEEEDILSGFVL 391 (514)
Q Consensus 351 -~~~V~si~~~~------------~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl 391 (514)
.++||+|...+ ..+.++.|..-+-+...|++. ...|+.+
T Consensus 272 i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~--~~aG~~~ 323 (590)
T TIGR00491 272 IVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDD--VMAGSPI 323 (590)
T ss_pred ccEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCC--CCCCCEE
Confidence 78999998764 355666666666665555543 3456554
No 55
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=100.00 E-value=6.3e-32 Score=253.35 Aligned_cols=176 Identities=36% Similarity=0.596 Sum_probs=152.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEE--e
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE--T 158 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~--~ 158 (514)
|+.++|+++||+|||||||+++|++..+.+..+...+. ....+|..+.|+++|+|++.....+. +
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~-------------~~~~~~~~~~e~~~~~ti~~~~~~~~~~~ 67 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEET-------------KNAFLDKHPEERERGITIDLSFISFEKNE 67 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHH-------------HHCHHHSSHHHHHCTSSSSSEEEEEEBTE
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhcccccccccccc-------------ccccccccchhhhcccccccccccccccc
Confidence 57899999999999999999999999998877654330 12347888899999999999999999 9
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
.++.++|||||||.+|++++.++++.+|++|+|||+.+|. ..|+++++.++..+++| +|||+||||+.
T Consensus 68 ~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~-------~~~~~~~l~~~~~~~~p-~ivvlNK~D~~---- 135 (188)
T PF00009_consen 68 NNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGI-------QPQTEEHLKILRELGIP-IIVVLNKMDLI---- 135 (188)
T ss_dssp SSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBS-------THHHHHHHHHHHHTT-S-EEEEEETCTSS----
T ss_pred cccceeecccccccceeecccceecccccceeeeeccccc-------ccccccccccccccccc-eEEeeeeccch----
Confidence 9999999999999999999999999999999999999994 47999999999999999 99999999993
Q ss_pred hHHHHHHHHhhhh-hhhhhccCcccCCeeEEeecccccccccccc
Q 010278 239 SKERYDEIESKMT-PFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 239 ~~~~~~~i~~~l~-~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
+.+++++.+++. .+++..++.....+|++|+||++|.|+.+|+
T Consensus 136 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll 179 (188)
T PF00009_consen 136 -EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELL 179 (188)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHH
T ss_pred -hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHH
Confidence 567778888887 5667777652135899999999999999853
No 56
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-32 Score=285.31 Aligned_cols=247 Identities=23% Similarity=0.356 Sum_probs=193.2
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
...+.+.|||+||||+|||.|++.|...+.+ ++.+.|||++++..+|..
T Consensus 471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVq-------------------------------egeaggitqqIgAt~fp~ 519 (1064)
T KOG1144|consen 471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQ-------------------------------EGEAGGITQQIGATYFPA 519 (1064)
T ss_pred hhcCCceEEEeecccccchHHHHHhhccccc-------------------------------cccccceeeeccccccch
Confidence 3568899999999999999999999654332 556789999999988865
Q ss_pred C------------------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcC
Q 010278 159 E------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG 220 (514)
Q Consensus 159 ~------------------~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ 220 (514)
. -..+.+||||||+.|.+.+.+|++.||+||||||.++| +++||.|.+.+++..+
T Consensus 520 ~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhG-------lepqtiESi~lLR~rk 592 (1064)
T KOG1144|consen 520 ENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHG-------LEPQTIESINLLRMRK 592 (1064)
T ss_pred HHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhcc-------CCcchhHHHHHHHhcC
Confidence 4 23489999999999999999999999999999999999 5699999999999999
Q ss_pred CCeEEEEEeeccCCCCCchH------------------HHHHHHHhhhhhhhhhccCcc---------cCCeeEEeeccc
Q 010278 221 VTKLLLVVNKMDDHTVNWSK------------------ERYDEIESKMTPFLKASGYNV---------KKDVQFLPISGL 273 (514)
Q Consensus 221 vp~~IvviNK~D~~~~~~~~------------------~~~~~i~~~l~~~l~~~g~~~---------~~~~~iipiSa~ 273 (514)
.| |||++||+|+. +.|.. ..|+...+.+...|...|++. ...+.+||+||.
T Consensus 593 tp-FivALNKiDRL-Ygwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~ 670 (1064)
T KOG1144|consen 593 TP-FIVALNKIDRL-YGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAI 670 (1064)
T ss_pred CC-eEEeehhhhhh-cccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccc
Confidence 99 99999999984 66722 334444444444555666552 345789999999
Q ss_pred cccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCC--
Q 010278 274 MGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK-- 349 (514)
Q Consensus 274 ~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~-- 349 (514)
+|+||.+|+.. |.++-+........+-..+++.|.+|. .|.|+.+...+.+|.|+.||.|+++..+
T Consensus 671 sGeGipdLl~l----------lv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~Gp 740 (1064)
T KOG1144|consen 671 SGEGIPDLLLL----------LVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGP 740 (1064)
T ss_pred cCCCcHHHHHH----------HHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCc
Confidence 99999986431 333333222333345567889999876 7999999999999999999999998765
Q ss_pred --------------cEEEEEEEEECCeee-------------eecCCCCeEEE
Q 010278 350 --------------AQVKVLAIYCDDNRV-------------RHAGPGENLRI 375 (514)
Q Consensus 350 --------------~~~~V~si~~~~~~v-------------~~a~aG~~v~~ 375 (514)
...+|++-++||..| +.|.||..+-+
T Consensus 741 IvTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LEkaiaG~~l~V 793 (1064)
T KOG1144|consen 741 IVTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLEKAIAGTRLLV 793 (1064)
T ss_pred hhHHHHHhcCCcchHhhccccceeehhHhhhhccchhhhcchHHHhcCCeeEE
Confidence 356888888887554 44666666655
No 57
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.98 E-value=7.9e-31 Score=290.67 Aligned_cols=272 Identities=22% Similarity=0.261 Sum_probs=205.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.+||+|+||+|+|||||+++|++.+|.+... |+. ..+.+.+|..+.|+++|+|++.....++++
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~------------~~~-~~g~~~~D~~~~e~~rgiti~~~~~~~~~~ 73 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKI------------GEV-HDGAATMDWMEQEKERGITITSAATTVFWK 73 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCcccc------------ccc-cCCccccCCCHHHHhcCCCEecceEEEEEC
Confidence 3467899999999999999999999988876421 111 124588999999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~ 239 (514)
+++++|+|||||.+|...+.++++.+|++|||||+..|+. .|+++++.++...++| +++++||||+..++
T Consensus 74 ~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~-------~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~-- 143 (689)
T TIGR00484 74 GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQ-------PQSETVWRQANRYEVP-RIAFVNKMDKTGAN-- 143 (689)
T ss_pred CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCC-------hhHHHHHHHHHHcCCC-EEEEEECCCCCCCC--
Confidence 9999999999999999999999999999999999999853 6899999999999999 78899999995443
Q ss_pred HHHHHHHHhhhhhhhhhccCc-----------------------------------------------------------
Q 010278 240 KERYDEIESKMTPFLKASGYN----------------------------------------------------------- 260 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~----------------------------------------------------------- 260 (514)
+..+.+++...+....+.
T Consensus 144 ---~~~~~~~i~~~l~~~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e 220 (689)
T TIGR00484 144 ---FLRVVNQIKQRLGANAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAE 220 (689)
T ss_pred ---HHHHHHHHHHHhCCCceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHh
Confidence 222333333222211000
Q ss_pred -----------------------------ccCCeeEEeeccccccccccccccCCCCCCCcccHHHH-hhhccCCCC---
Q 010278 261 -----------------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEA-LDRIEITPR--- 307 (514)
Q Consensus 261 -----------------------------~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~-l~~l~~~~~--- 307 (514)
...-+|++..||+++.|+.. |++. +..+|.|..
T Consensus 221 ~dd~lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~--------------LLd~I~~~lPsP~~~~~ 286 (689)
T TIGR00484 221 FDEELMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQL--------------LLDAVVDYLPSPTDVPA 286 (689)
T ss_pred cCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHHH--------------HHHHHHHHCCCchhccc
Confidence 01123444445555555554 3433 334555421
Q ss_pred ----------------CCCCCceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC----Ceeee
Q 010278 308 ----------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVR 365 (514)
Q Consensus 308 ----------------~~~~p~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~ 365 (514)
+++.||.+.|.++. +..|.++++||+||+|+.||.|+....+...+|..|... ..+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~ 366 (689)
T TIGR00484 287 IKGIDPDTEKEIERKASDDEPFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIK 366 (689)
T ss_pred ccccCCCCCceeeecCCCCCceEEEEEEeeecCCCCeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCccccc
Confidence 23568899999887 467999999999999999999997666666777777654 46899
Q ss_pred ecCCCCeEEEEccCCCcccceeeeEEccCC
Q 010278 366 HAGPGENLRIRLSGIEEEDILSGFVLSSVA 395 (514)
Q Consensus 366 ~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~ 395 (514)
++.||++|++ .|++ +++.|++|++.+
T Consensus 367 ~~~aGdI~~i--~gl~--~~~~gdtl~~~~ 392 (689)
T TIGR00484 367 EVRAGDICAA--IGLK--DTTTGDTLCDPK 392 (689)
T ss_pred ccCCCCEEEE--cCCC--CCCCCCEEeCCC
Confidence 9999999996 5554 468899998755
No 58
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.97 E-value=2.3e-30 Score=276.32 Aligned_cols=281 Identities=19% Similarity=0.217 Sum_probs=209.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.+||+|+||+|||||||+++|++..|.+..... ..++++. ....+|..+.|+++|+|+......+++.
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~--------v~~~g~~-~~t~~D~~~~E~~rgisi~~~~~~~~~~ 78 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGA--------VKGRGSQ-RHAKSDWMEMEKQRGISITTSVMQFPYR 78 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccce--------ecccccc-ccccCCCCHHHHhcCCcEEEEEEEEeeC
Confidence 356799999999999999999999999888764321 0011111 1235789999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~ 239 (514)
++.++|+|||||.+|...+.++++.+|++|+|||+..|+ ..++..++..++..++| +|+++||+|+...+..
T Consensus 79 ~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-------~~~t~~l~~~~~~~~~P-iivviNKiD~~~~~~~ 150 (527)
T TIGR00503 79 DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-------ETRTRKLMEVTRLRDTP-IFTFMNKLDRDIRDPL 150 (527)
T ss_pred CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCC-------CHHHHHHHHHHHhcCCC-EEEEEECccccCCCHH
Confidence 999999999999999999999999999999999999884 36899999999989999 8999999998544321
Q ss_pred HHHHHHHHhhhhhh------------------------------------------------------------------
Q 010278 240 KERYDEIESKMTPF------------------------------------------------------------------ 253 (514)
Q Consensus 240 ~~~~~~i~~~l~~~------------------------------------------------------------------ 253 (514)
+.++++.+.+...
T Consensus 151 -~ll~~i~~~l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l 229 (527)
T TIGR00503 151 -ELLDEVENELKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDEL 229 (527)
T ss_pred -HHHHHHHHHhCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHH
Confidence 1122222211110
Q ss_pred --hhhc-------cCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCC---------CCCCceE
Q 010278 254 --LKAS-------GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD---------PNGPFRM 315 (514)
Q Consensus 254 --l~~~-------g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~---------~~~p~~~ 315 (514)
+... .+....-+|++..||+++.|+..|+ ..+++.+|.|... .+.+|..
T Consensus 230 e~~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LL-------------d~i~~~~PsP~~~~~~~~~~~~~~~~~~~ 296 (527)
T TIGR00503 230 ELVEGASNEFDLAAFHGGEMTPVFFGTALGNFGVDHFL-------------DGLLQWAPKPEARQSDTRTVEPTEEKFSG 296 (527)
T ss_pred HHHhhhccccCHHHHhcCCeeEEEEeecccCccHHHHH-------------HHHHHHCCCCccccCCceecCCCCCCeeE
Confidence 0000 0000123467777888888887742 2244455655321 2456778
Q ss_pred EEEEEEc-----cCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC----CeeeeecCCCCeEEEEccCCCcccce
Q 010278 316 PIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDIL 386 (514)
Q Consensus 316 ~i~~~~~-----~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~ 386 (514)
.|+++.. .+|++++.||.||+|+.|++|+....++..++..++.. +.++++|.|||++++ .++ ..++
T Consensus 297 ~VFK~~~~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~--~~~--~~~~ 372 (527)
T TIGR00503 297 FVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGL--HNH--GTIQ 372 (527)
T ss_pred EEEEEEeccCcccCceEEEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEE--ECC--CCcc
Confidence 8887753 47999999999999999999998888888898888654 578999999999985 443 4588
Q ss_pred eeeEEccCC
Q 010278 387 SGFVLSSVA 395 (514)
Q Consensus 387 ~G~vl~~~~ 395 (514)
.||+||+.+
T Consensus 373 ~GDtl~~~~ 381 (527)
T TIGR00503 373 IGDTFTQGE 381 (527)
T ss_pred cCCEecCCC
Confidence 999998744
No 59
>PRK13351 elongation factor G; Reviewed
Probab=99.97 E-value=5.8e-30 Score=284.37 Aligned_cols=272 Identities=22% Similarity=0.315 Sum_probs=211.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+.+||+|+||+|+|||||+++|++.+|.+..... ... ..+.+|+.+.|+.+|+|+......+.+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~-------v~~------~~~~~d~~~~e~~r~~ti~~~~~~~~~~~ 72 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGE-------VED------GTTVTDWMPQEQERGITIESAATSCDWDN 72 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCcccccc-------ccC------CcccCCCCHHHHhcCCCcccceEEEEECC
Confidence 46789999999999999999999998887553210 001 24578999999999999999999999999
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~ 240 (514)
+.++|||||||.+|...+.++++.+|++|+|+|+..+.. .++.+++..+...++| +++++||+|+..+++
T Consensus 73 ~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~-------~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~~-- 142 (687)
T PRK13351 73 HRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQ-------PQTETVWRQADRYGIP-RLIFINKMDRVGADL-- 142 (687)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCC-EEEEEECCCCCCCCH--
Confidence 999999999999999999999999999999999999853 6899999999999999 789999999965542
Q ss_pred HHHHHHHhhhhhhhhhc---------------------------------------------------------------
Q 010278 241 ERYDEIESKMTPFLKAS--------------------------------------------------------------- 257 (514)
Q Consensus 241 ~~~~~i~~~l~~~l~~~--------------------------------------------------------------- 257 (514)
..+.++++..|...
T Consensus 143 ---~~~~~~i~~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~ 219 (687)
T PRK13351 143 ---FKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAE 219 (687)
T ss_pred ---HHHHHHHHHHHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHh
Confidence 22222222221110
Q ss_pred -----------c--Cc-------------ccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCC----
Q 010278 258 -----------G--YN-------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR---- 307 (514)
Q Consensus 258 -----------g--~~-------------~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~---- 307 (514)
+ +. ...-+|++..||++|.|+..|++ .++..+|.|..
T Consensus 220 ~d~~lle~~l~~~~l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd-------------~I~~~lPsP~~~~~~ 286 (687)
T PRK13351 220 FDDELLELYLEGEELSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIEPLLD-------------AVVDYLPSPLEVPPP 286 (687)
T ss_pred cCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCcCccHHHHHH-------------HHHHHCCChhhcccc
Confidence 0 00 01235777779999999987533 23344555431
Q ss_pred --------------CCCCCceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC----Ceeeeec
Q 010278 308 --------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHA 367 (514)
Q Consensus 308 --------------~~~~p~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a 367 (514)
+++.|+.+.|.+++ ++.|.++++||.+|+|+.||+|++.+.+...+|..|+.. ..++++|
T Consensus 287 ~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~ 366 (687)
T PRK13351 287 RGSKDNGKPVKVDPDPEKPLLALVFKVQYDPYAGKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRA 366 (687)
T ss_pred cccCCCCCceeecCCCCCCeEEEEEEeeecCCCceEEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCcc
Confidence 34678999999987 467999999999999999999999888877888887654 5789999
Q ss_pred CCCCeEEEEccCCCcccceeeeEEccCC
Q 010278 368 GPGENLRIRLSGIEEEDILSGFVLSSVA 395 (514)
Q Consensus 368 ~aG~~v~~~l~~~~~~~i~~G~vl~~~~ 395 (514)
.||+++++ .|++ ++..|++|++.+
T Consensus 367 ~aGdI~~i--~gl~--~~~~gdtl~~~~ 390 (687)
T PRK13351 367 KAGDIVAV--AGLK--ELETGDTLHDSA 390 (687)
T ss_pred CCCCEEEE--ECcc--cCccCCEEeCCC
Confidence 99999985 5554 367899998754
No 60
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.97 E-value=6.1e-30 Score=284.13 Aligned_cols=289 Identities=21% Similarity=0.323 Sum_probs=210.9
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEE---
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH--- 155 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~--- 155 (514)
.....+||+++||+|+|||||+++|++.+|.+.... .| -.+.+|+.+.|+++|+|++.....
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~----------~~-----~~~~~d~~~~e~~rg~Ti~~~~~~~~~ 79 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEEL----------AG-----QQLYLDFDEQEQERGITINAANVSMVH 79 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhc----------CC-----ceeecCCCHHHHhhcchhhcccceeEE
Confidence 345679999999999999999999999999876521 12 135689999999999999987655
Q ss_pred -EEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCC
Q 010278 156 -FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 234 (514)
Q Consensus 156 -~~~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~ 234 (514)
+++.++.++|||||||.+|...+.++++.+|++|+|+|+..|+ ..++.+++..+...++| +|+++||||+.
T Consensus 80 ~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~-------~~~t~~~~~~~~~~~~p-~ivviNKiD~~ 151 (720)
T TIGR00490 80 EYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGV-------MPQTETVLRQALKENVK-PVLFINKVDRL 151 (720)
T ss_pred eecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCC-------CccHHHHHHHHHHcCCC-EEEEEEChhcc
Confidence 6678899999999999999999999999999999999999985 36999999999899999 67999999995
Q ss_pred CCC------chHHHHHHHHhhhhhhhhhcc---------CcccCCeeEEeeccccccccc------------cccc----
Q 010278 235 TVN------WSKERYDEIESKMTPFLKASG---------YNVKKDVQFLPISGLMGLNMK------------TRVD---- 283 (514)
Q Consensus 235 ~~~------~~~~~~~~i~~~l~~~l~~~g---------~~~~~~~~iipiSa~~G~gi~------------~l~~---- 283 (514)
..+ +.+.+|..+...+...++... +.+. +..+...|++.+++.. ++..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 230 (720)
T TIGR00490 152 INELKLTPQELQERFIKIITEVNKLIKAMAPEEFRDKWKVRVE-DGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKE 230 (720)
T ss_pred cchhcCCHHHHHHHHhhhhHHHHhhhhccCCHHHhhceEechh-hCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHh
Confidence 433 234556666666665554320 0000 1112333555543221 0000
Q ss_pred c---CCCCCCC-cccHHHHh-hhccCCC-------------------------CCCCCCceEEEEEEE--ccCCeEEEEE
Q 010278 284 K---SLCPWWN-GPCLFEAL-DRIEITP-------------------------RDPNGPFRMPIIDKF--KDMGTVVMGK 331 (514)
Q Consensus 284 ~---~~~~w~~-g~tL~~~l-~~l~~~~-------------------------~~~~~p~~~~i~~~~--~~~G~v~~g~ 331 (514)
. .+..|+. -..|++.+ ..+|.|. ++.++|+.+.|.+++ ++.|++++||
T Consensus 231 ~~~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~R 310 (720)
T TIGR00490 231 DKQKELAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGR 310 (720)
T ss_pred ccHHHHhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEE
Confidence 0 0001211 01244433 3345542 123568889999886 5789999999
Q ss_pred EeeeeeecCCEEEEecCCcEEEEEEEEEC----CeeeeecCCCCeEEEEccCCCcccceeeeEEccCC
Q 010278 332 VESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 395 (514)
Q Consensus 332 v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~ 395 (514)
|.+|+|++||.|++.+.+...+|+.|+.. ..++++|.||++|++ .|++ ++.+||+|++++
T Consensus 311 V~sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~GdtL~~~~ 374 (720)
T TIGR00490 311 LYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAV--IGLK--DAVAGETICTTV 374 (720)
T ss_pred EEeCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEE--ECcc--ccccCceeecCC
Confidence 99999999999999999999999999765 468999999999986 4553 477999998765
No 61
>PRK12740 elongation factor G; Reviewed
Probab=99.97 E-value=5.4e-29 Score=276.14 Aligned_cols=264 Identities=23% Similarity=0.320 Sum_probs=205.5
Q ss_pred EecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEEEEeC
Q 010278 89 IGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDA 168 (514)
Q Consensus 89 vG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~liDt 168 (514)
+||+|||||||+++|++.+|.+.... +.. ...+.+|..+.|+++|+|+......+.+.++.++||||
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~------------~~~-~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDt 67 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIG------------EVE-DGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDT 67 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCc------------ccc-CCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEEC
Confidence 69999999999999999999865421 000 12378999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHh
Q 010278 169 PGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIES 248 (514)
Q Consensus 169 PGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~ 248 (514)
|||.+|...+.+++..+|++|+|+|+..+.. .++..++..+...++| +++++||+|+...++ .++.+
T Consensus 68 PG~~~~~~~~~~~l~~aD~vllvvd~~~~~~-------~~~~~~~~~~~~~~~p-~iiv~NK~D~~~~~~-----~~~~~ 134 (668)
T PRK12740 68 PGHVDFTGEVERALRVLDGAVVVVCAVGGVE-------PQTETVWRQAEKYGVP-RIIFVNKMDRAGADF-----FRVLA 134 (668)
T ss_pred CCcHHHHHHHHHHHHHhCeEEEEEeCCCCcC-------HHHHHHHHHHHHcCCC-EEEEEECCCCCCCCH-----HHHHH
Confidence 9999999999999999999999999998853 5888899999999999 888999999854432 12222
Q ss_pred hhhhhhhh------------------------------------------------------------------------
Q 010278 249 KMTPFLKA------------------------------------------------------------------------ 256 (514)
Q Consensus 249 ~l~~~l~~------------------------------------------------------------------------ 256 (514)
+++..+..
T Consensus 135 ~l~~~l~~~~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~ 214 (668)
T PRK12740 135 QLQEKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLE 214 (668)
T ss_pred HHHHHHCCCceeEEecccCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHC
Confidence 22221110
Q ss_pred -ccC-------------cccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCC----------------
Q 010278 257 -SGY-------------NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITP---------------- 306 (514)
Q Consensus 257 -~g~-------------~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~---------------- 306 (514)
..+ ....-+|++..||++|.|+..|++ .++..+|.|.
T Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd-------------~i~~~lPsp~~~~~~~~~~~~~~~~~ 281 (668)
T PRK12740 215 GEELSEEEIKAGLRKATLAGEIVPVFCGSALKNKGVQRLLD-------------AVVDYLPSPLEVPPVDGEDGEEGAEL 281 (668)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHH-------------HHHHHCCChhhcccccCCCCcccccc
Confidence 000 001246788889999999988533 2334455542
Q ss_pred -CCCCCCceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC----CeeeeecCCCCeEEEEccC
Q 010278 307 -RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSG 379 (514)
Q Consensus 307 -~~~~~p~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~~~l~~ 379 (514)
++++.|+.+.|.+++ +..|.++.+||.+|+|+.||+|++.+.+...+|..|... ..++++|.||+++++. |
T Consensus 282 ~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~--g 359 (668)
T PRK12740 282 APDPDGPLVALVFKTMDDPFVGKLSLVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVA--K 359 (668)
T ss_pred ccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEe--c
Confidence 245678999999987 467999999999999999999999988777777777643 5789999999999974 5
Q ss_pred CCcccceeeeEEccCC
Q 010278 380 IEEEDILSGFVLSSVA 395 (514)
Q Consensus 380 ~~~~~i~~G~vl~~~~ 395 (514)
++ .+++|++|++..
T Consensus 360 l~--~~~~Gdtl~~~~ 373 (668)
T PRK12740 360 LK--DAATGDTLCDKG 373 (668)
T ss_pred cC--ccCCCCEEeCCC
Confidence 54 488999998654
No 62
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.6e-29 Score=249.37 Aligned_cols=279 Identities=21% Similarity=0.261 Sum_probs=202.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+.++.||+-|||+|||||...||..-|.|..-..-+ ||.+.. ....|..+.|++|||++..+...|++.+
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk--------~rk~~~-~a~SDWM~iEkqRGISVtsSVMqF~Y~~ 80 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVK--------GRKSGK-HAKSDWMEIEKQRGISVTSSVMQFDYAD 80 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceee--------eccCCc-ccccHHHHHHHhcCceEEeeEEEeccCC
Confidence 4568899999999999999999999888776433211 111111 1235667799999999999999999999
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~ 240 (514)
+.++|+|||||++|...+.+.+..+|.||+||||..|+ ++||+..+..|+..++| ++-+|||||+..-+ .-
T Consensus 81 ~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGi-------E~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rd-P~ 151 (528)
T COG4108 81 CLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGI-------EPQTLKLFEVCRLRDIP-IFTFINKLDREGRD-PL 151 (528)
T ss_pred eEEeccCCCCccccchhHHHHHHhhheeeEEEecccCc-------cHHHHHHHHHHhhcCCc-eEEEeeccccccCC-hH
Confidence 99999999999999999999999999999999999994 58999999999999999 99999999995433 22
Q ss_pred HHHHHHHhhhhhhhhhccCcc-----------------------------------------------------------
Q 010278 241 ERYDEIESKMTPFLKASGYNV----------------------------------------------------------- 261 (514)
Q Consensus 241 ~~~~~i~~~l~~~l~~~g~~~----------------------------------------------------------- 261 (514)
+-++++.++|.--...+.|.+
T Consensus 152 ELLdEiE~~L~i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~E 231 (528)
T COG4108 152 ELLDEIEEELGIQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELE 231 (528)
T ss_pred HHHHHHHHHhCcceecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHH
Confidence 333333333322111111110
Q ss_pred ----------------cCCeeEEeeccccccccccccccCCCCCCCcccHHH-HhhhccCCCC---------CCCCCceE
Q 010278 262 ----------------KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFE-ALDRIEITPR---------DPNGPFRM 315 (514)
Q Consensus 262 ----------------~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~-~l~~l~~~~~---------~~~~p~~~ 315 (514)
..-.|++.-||+..-|+.. |++ +++.-|+|.. +.+..|..
T Consensus 232 L~~~a~~~Fd~~~fl~G~~TPVFFGSAl~NFGV~~--------------~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsG 297 (528)
T COG4108 232 LVQGAGNEFDLEAFLAGELTPVFFGSALGNFGVDH--------------FLDALVDWAPSPRARQADTREVEPTEDKFSG 297 (528)
T ss_pred HHHhhccccCHHHHhcCCccceEehhhhhccCHHH--------------HHHHHHhhCCCCCcccCCcCcccCCCCccce
Confidence 1112444444444444444 233 3333344321 12333555
Q ss_pred EEEEEE-----ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC----CeeeeecCCCCeEEEEccCCCcccce
Q 010278 316 PIIDKF-----KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDIL 386 (514)
Q Consensus 316 ~i~~~~-----~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~ 386 (514)
.|..+. +.+.+++..||-||.+..|+++.....++.+++..-+.+ ++.+++|.|||++++.-.| .++
T Consensus 298 FVFKIQANMDp~HRDRIAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG----~~~ 373 (528)
T COG4108 298 FVFKIQANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHG----TIQ 373 (528)
T ss_pred EEEEEEcCCCcccccceeEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCCC----cee
Confidence 666554 367899999999999999999999999988888877654 7789999999999964443 488
Q ss_pred eeeEEccCC
Q 010278 387 SGFVLSSVA 395 (514)
Q Consensus 387 ~G~vl~~~~ 395 (514)
.||+++..+
T Consensus 374 IGDT~t~Ge 382 (528)
T COG4108 374 IGDTFTEGE 382 (528)
T ss_pred ecceeecCc
Confidence 999998754
No 63
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.96 E-value=1.1e-28 Score=277.68 Aligned_cols=155 Identities=21% Similarity=0.297 Sum_probs=130.8
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEE
Q 010278 78 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 157 (514)
Q Consensus 78 ~~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~ 157 (514)
....+.+||+|+||+|||||||+++|++.+|.+.... .| ..+.+|..++|+++|+|++.+...+.
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~rgiti~~~~~~~~ 78 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AG-----DVRMTDTRADEAERGITIKSTGISLY 78 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCccccc----------CC-----ceeeccCcHHHHHhCCceecceeEEE
Confidence 3466789999999999999999999999999876531 11 34678999999999999999887777
Q ss_pred eC----------------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCC
Q 010278 158 TE----------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV 221 (514)
Q Consensus 158 ~~----------------~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~v 221 (514)
|. ++.++|||||||.+|+.++.++++.+|+||+||||.+|+. .||+.++.++...++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~-------~~t~~~~~~~~~~~~ 151 (843)
T PLN00116 79 YEMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------VQTETVLRQALGERI 151 (843)
T ss_pred eecccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCc-------ccHHHHHHHHHHCCC
Confidence 63 6789999999999999999999999999999999999964 799999999999999
Q ss_pred CeEEEEEeeccCCCCCc------hHHHHHHHHhhhhhhhh
Q 010278 222 TKLLLVVNKMDDHTVNW------SKERYDEIESKMTPFLK 255 (514)
Q Consensus 222 p~~IvviNK~D~~~~~~------~~~~~~~i~~~l~~~l~ 255 (514)
| +|+++||||++..++ ...+++.+.++++.++.
T Consensus 152 p-~i~~iNK~D~~~~~~~~~~~~~~~~~~~vi~~in~~~~ 190 (843)
T PLN00116 152 R-PVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMA 190 (843)
T ss_pred C-EEEEEECCcccchhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 9 889999999953222 12578888888874433
No 64
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=5.5e-30 Score=242.83 Aligned_cols=349 Identities=22% Similarity=0.350 Sum_probs=262.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
.....+||+.+||+-|||||++.++ +|.-+- ..+.|-+|+||+.+++.+...
T Consensus 34 sRQATiNIGTIGHVAHGKSTvVkAi---SGv~Tv-------------------------rFK~ELERNITIKLGYANAKI 85 (466)
T KOG0466|consen 34 SRQATINIGTIGHVAHGKSTVVKAI---SGVHTV-------------------------RFKNELERNITIKLGYANAKI 85 (466)
T ss_pred hheeeeeecceeccccCcceeeeee---ccceEE-------------------------EehhhhhcceeEEeccccceE
Confidence 4556799999999999999999887 332111 223566788888887654211
Q ss_pred -----------------------------C--------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccc
Q 010278 159 -----------------------------E--------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFET 201 (514)
Q Consensus 159 -----------------------------~--------~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~ 201 (514)
. -+++.|+|+|||.-.+.+|+.|+...|+|+|+|.+++..
T Consensus 86 Ykc~~~kCprP~cy~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsC--- 162 (466)
T KOG0466|consen 86 YKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESC--- 162 (466)
T ss_pred EecCCCCCCCcchhhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCC---
Confidence 0 145899999999999999999999999999999999876
Q ss_pred cccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 202 GFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 202 ~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
.++||.|||.....+.++|++++-||+|+...+ ...+-.+++..|++.... ++.|++|+||--+.|++-
T Consensus 163 ---PQPQTsEHLaaveiM~LkhiiilQNKiDli~e~----~A~eq~e~I~kFi~~t~a---e~aPiiPisAQlkyNId~- 231 (466)
T KOG0466|consen 163 ---PQPQTSEHLAAVEIMKLKHIIILQNKIDLIKES----QALEQHEQIQKFIQGTVA---EGAPIIPISAQLKYNIDV- 231 (466)
T ss_pred ---CCCchhhHHHHHHHhhhceEEEEechhhhhhHH----HHHHHHHHHHHHHhcccc---CCCceeeehhhhccChHH-
Confidence 469999999999999999999999999995433 223333445555554432 367999999999999986
Q ss_pred cccCCCCCCCcccHHH-HhhhccCCCCCCCCCceEEEEEEEc----c------CCeEEEEEEeeeeeecCCEEEEecCC-
Q 010278 282 VDKSLCPWWNGPCLFE-ALDRIEITPRDPNGPFRMPIIDKFK----D------MGTVVMGKVESGSVREGDSLLVMPNK- 349 (514)
Q Consensus 282 ~~~~~~~w~~g~tL~~-~l~~l~~~~~~~~~p~~~~i~~~~~----~------~G~v~~g~v~sG~l~~gd~v~~~p~~- 349 (514)
+.+ ++..+|.|.++...|.++.|.++|. | .|-|+.|.+..|.|++||.|.+.|+-
T Consensus 232 -------------v~eyivkkIPvPvRdf~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv 298 (466)
T KOG0466|consen 232 -------------VCEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIV 298 (466)
T ss_pred -------------HHHHHHhcCCCCccccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCcee
Confidence 444 4567999999999999999999982 2 58899999999999999999999963
Q ss_pred -----cE-------EEEEEEEECCeeeeecCCCCeEEEEcc---CCCcccceeeeEEccCCCCccceeEEEEEEEEeccc
Q 010278 350 -----AQ-------VKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL 414 (514)
Q Consensus 350 -----~~-------~~V~si~~~~~~v~~a~aG~~v~~~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~ 414 (514)
.. .+|.|++..+.++..|.||..+++.-+ .+...|--.|.||...+..|....+++...++|..+
T Consensus 299 ~kd~~g~~~C~Pi~SrI~sL~AE~n~L~~AvPGGLIGVGT~~DPtlcraDrlVGqVlG~~G~LP~if~elei~y~Llrrl 378 (466)
T KOG0466|consen 299 TKDENGNIKCRPIFSRIVSLFAEQNDLQFAVPGGLIGVGTKMDPTLCRADRLVGQVLGAVGTLPDIFTELEISYFLLRRL 378 (466)
T ss_pred eecCCCcEEEeeHHHHHHHHHhhhccceeecCCceeeeccccCcchhhhhHHHHHHHhhccCCccceeEEEeehhhhhHH
Confidence 12 245555566889999999999998654 233444557899998888889999999988876422
Q ss_pred c------------cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcceEEeeecc
Q 010278 415 D------------NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFA 482 (514)
Q Consensus 415 ~------------~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~pi~~e~~~ 482 (514)
- -..+..|-..++++++....++|..+.. + .+++.|..|+|.+-.+
T Consensus 379 lgvrt~~~~k~~kv~kL~k~E~lmvNIGS~sTG~~v~~vk~--------------------d--~~k~~Lt~P~CteigE 436 (466)
T KOG0466|consen 379 LGVRTKGDKKQAKVSKLVKNEILMVNIGSTSTGGRVSAVKA--------------------D--MAKIQLTSPVCTEIGE 436 (466)
T ss_pred hccccccccccchhhhcccCcEEEEEecccccCceEEEEec--------------------c--eeeeEecCchhcccch
Confidence 1 0235566677888888877777775532 1 4678888999988653
Q ss_pred cccccceEEEEeCCeEEEEEEEEe
Q 010278 483 DFAQLGRFTLRTEGKTVAVGKVTE 506 (514)
Q Consensus 483 ~~~~lgrfilr~~g~tva~G~I~~ 506 (514)
.-+++|.+=+ .=|.+|+|.|..
T Consensus 437 -kiAlSRrvek-hWRLIGwg~I~~ 458 (466)
T KOG0466|consen 437 -KIALSRRVEK-HWRLIGWGQIKA 458 (466)
T ss_pred -hhhhhhhhhh-heEEecceeEeC
Confidence 3344554321 347899998863
No 65
>PTZ00416 elongation factor 2; Provisional
Probab=99.96 E-value=3.8e-28 Score=272.92 Aligned_cols=154 Identities=21% Similarity=0.321 Sum_probs=131.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
...+.+||+++||+|||||||+++|++.+|.++.. ..|. .+.+|..++|++||+|++.+...+.+
T Consensus 15 ~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~~rgiti~~~~~~~~~ 79 (836)
T PTZ00416 15 NPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSK----------NAGD-----ARFTDTRADEQERGITIKSTGISLYY 79 (836)
T ss_pred CccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccc----------cCCc-----eeecccchhhHhhcceeeccceEEEe
Confidence 34577899999999999999999999999987643 1221 35689999999999999998877777
Q ss_pred C----------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEE
Q 010278 159 E----------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVV 228 (514)
Q Consensus 159 ~----------~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~Ivvi 228 (514)
. ++.|+|+|||||.+|..++.++++.+|+||+||||..|+. .||+.++..+...++| +|+++
T Consensus 80 ~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~-------~~t~~~~~~~~~~~~p-~iv~i 151 (836)
T PTZ00416 80 EHDLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVC-------VQTETVLRQALQERIR-PVLFI 151 (836)
T ss_pred ecccccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcC-------ccHHHHHHHHHHcCCC-EEEEE
Confidence 5 6789999999999999999999999999999999999954 7999999999999999 88999
Q ss_pred eeccCCCCCch------HHHHHHHHhhhhhhhh
Q 010278 229 NKMDDHTVNWS------KERYDEIESKMTPFLK 255 (514)
Q Consensus 229 NK~D~~~~~~~------~~~~~~i~~~l~~~l~ 255 (514)
||||+...++. ..+++.+.++++..+.
T Consensus 152 NK~D~~~~~~~~~~~~~~~~~~~ii~~in~~l~ 184 (836)
T PTZ00416 152 NKVDRAILELQLDPEEIYQNFVKTIENVNVIIA 184 (836)
T ss_pred EChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999533322 4678888888887776
No 66
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=5.4e-29 Score=255.35 Aligned_cols=275 Identities=24% Similarity=0.314 Sum_probs=212.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
-++.+||+|.-|.|+|||||.+++||..|.+..-. +. .|+ ...||+.+.||.+|||++.+..++.|.
T Consensus 36 ~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~------ev--~~~-----~a~md~m~~er~rgITiqSAAt~~~w~ 102 (721)
T KOG0465|consen 36 LNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIG------EV--RGG-----GATMDSMELERQRGITIQSAATYFTWR 102 (721)
T ss_pred hhhhcccceEEEEecCCceeeheeeeecceeeecc------cc--ccC-----ceeeehHHHHHhcCceeeeceeeeeec
Confidence 34789999999999999999999999998765321 11 111 457899999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~ 239 (514)
+++++|||||||.+|.-...++++.-|.||+|+|+..|+ +.||...+.+++..++| .|.+|||||+.+.+.-
T Consensus 103 ~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GV-------qsQt~tV~rQ~~ry~vP-~i~FiNKmDRmGa~~~ 174 (721)
T KOG0465|consen 103 DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGV-------ESQTETVWRQMKRYNVP-RICFINKMDRMGASPF 174 (721)
T ss_pred cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccce-------ehhhHHHHHHHHhcCCC-eEEEEehhhhcCCChH
Confidence 999999999999999999999999999999999999995 48999999999999999 6789999999766531
Q ss_pred H----------------------------------------------------------HHHHHHHhhhhh---------
Q 010278 240 K----------------------------------------------------------ERYDEIESKMTP--------- 252 (514)
Q Consensus 240 ~----------------------------------------------------------~~~~~i~~~l~~--------- 252 (514)
. +...+..+++-.
T Consensus 175 ~~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l 254 (721)
T KOG0465|consen 175 RTLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETL 254 (721)
T ss_pred HHHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 1 111111111111
Q ss_pred ---hhh--------------hccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCC----------
Q 010278 253 ---FLK--------------ASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEIT---------- 305 (514)
Q Consensus 253 ---~l~--------------~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~---------- 305 (514)
||. +.-++ ..-+|++.-||++..|+..+++. .++.+|.|
T Consensus 255 ~e~fLee~~ps~~~l~~aIRr~Ti~-r~fvPVl~GSAlKNkGVQPlLDA-------------VvdYLPsP~Ev~n~a~~k 320 (721)
T KOG0465|consen 255 AEMFLEEEEPSAQQLKAAIRRATIK-RSFVPVLCGSALKNKGVQPLLDA-------------VVDYLPSPSEVENYALNK 320 (721)
T ss_pred HHHHhccCCCCHHHHHHHHHHHHhh-cceeeEEechhhcccCcchHHHH-------------HHHhCCChhhhccccccc
Confidence 111 00000 12368888899999999886443 34444433
Q ss_pred ------------CCCCCCCceEEEEEEEcc-CCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC----CeeeeecC
Q 010278 306 ------------PRDPNGPFRMPIIDKFKD-MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAG 368 (514)
Q Consensus 306 ------------~~~~~~p~~~~i~~~~~~-~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~ 368 (514)
.++ +.||....+....| .|...+.||++|+|+.||.|+....+++++|..+.+. -++|+++.
T Consensus 321 e~~~~ekv~l~~~~d-~~Pfv~LAFKle~g~fGqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~ 399 (721)
T KOG0465|consen 321 ETNSKEKVTLSPSRD-KDPFVALAFKLEEGRFGQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVL 399 (721)
T ss_pred CCCCccceEeccCCC-CCceeeeEEEeeecCccceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhh
Confidence 111 22777777666544 4999999999999999999999999999999888655 36899999
Q ss_pred CCCeEEEEccCCCcccceeeeEEccCC
Q 010278 369 PGENLRIRLSGIEEEDILSGFVLSSVA 395 (514)
Q Consensus 369 aG~~v~~~l~~~~~~~i~~G~vl~~~~ 395 (514)
||++|+ |.|+ ++..||++.+..
T Consensus 400 AG~I~a--lfGi---dcasGDTftd~~ 421 (721)
T KOG0465|consen 400 AGDICA--LFGI---DCASGDTFTDKQ 421 (721)
T ss_pred ccceee--eecc---ccccCceeccCc
Confidence 999999 4665 688999999873
No 67
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.96 E-value=2.4e-27 Score=265.94 Aligned_cols=255 Identities=22% Similarity=0.334 Sum_probs=190.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC-
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 160 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~- 160 (514)
+.+--++++| ||||+++|..+.. ..+..+|||++++++.+.++.
T Consensus 464 ~~~~~~~~~~----KTtLLD~iR~t~v-------------------------------~~~EaGGITQ~IGa~~v~~~~~ 508 (1049)
T PRK14845 464 NFIANGILVH----NTTLLDKIRKTRV-------------------------------AKKEAGGITQHIGATEIPIDVI 508 (1049)
T ss_pred cceeeeeecc----cccHHHHHhCCCc-------------------------------ccccCCCceeccceEEEEeccc
Confidence 3444566666 9999999954432 255679999999999887752
Q ss_pred -----------------eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCe
Q 010278 161 -----------------TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTK 223 (514)
Q Consensus 161 -----------------~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~ 223 (514)
..++|+|||||+.|...+.++++.+|++|||+|+++|. .+|+.+++.++...++|
T Consensus 509 ~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi-------~~qT~e~I~~lk~~~iP- 580 (1049)
T PRK14845 509 KKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGF-------KPQTIEAINILRQYKTP- 580 (1049)
T ss_pred ccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccC-------CHhHHHHHHHHHHcCCC-
Confidence 13899999999999999999999999999999999984 37999999999999999
Q ss_pred EEEEEeeccCCCCCch---------------HHHHHHHHhh---hhhhhhhccCcc---------cCCeeEEeecccccc
Q 010278 224 LLLVVNKMDDHTVNWS---------------KERYDEIESK---MTPFLKASGYNV---------KKDVQFLPISGLMGL 276 (514)
Q Consensus 224 ~IvviNK~D~~~~~~~---------------~~~~~~i~~~---l~~~l~~~g~~~---------~~~~~iipiSa~~G~ 276 (514)
+|+|+||+|+. ..|. +..++++.+. +...|...|+.. ...+++||+||++|+
T Consensus 581 iIVViNKiDL~-~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGe 659 (1049)
T PRK14845 581 FVVAANKIDLI-PGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGE 659 (1049)
T ss_pred EEEEEECCCCc-cccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCC
Confidence 99999999984 2343 1223333222 222356666542 246899999999999
Q ss_pred ccccccccCCCCCCCcccHHHHhhh-c-cCCCCCCCCCceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCc--
Q 010278 277 NMKTRVDKSLCPWWNGPCLFEALDR-I-EITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKA-- 350 (514)
Q Consensus 277 gi~~l~~~~~~~w~~g~tL~~~l~~-l-~~~~~~~~~p~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~-- 350 (514)
||++|+.. |..+... + .....+.+.|++++|.+++ +|.|+|++|.|.+|+|++||.|+++|.+.
T Consensus 660 GId~Ll~~----------l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i 729 (1049)
T PRK14845 660 GIPELLMM----------VAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGTTIDAIIYDGTLRRGDTIVVGGPDDVI 729 (1049)
T ss_pred CHHHHHHH----------HHHhhHHhhhhhhccCCCCceEEEEEEEEEecCceeEEEEEEEcCEEecCCEEEEccCCCcc
Confidence 99986431 2111111 1 1123456789999999998 68999999999999999999999999764
Q ss_pred EEEEEEEEEC------------CeeeeecCCCCeEEEEccCCCcccceeeeEEc
Q 010278 351 QVKVLAIYCD------------DNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 392 (514)
Q Consensus 351 ~~~V~si~~~------------~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~ 392 (514)
.++||+|... ...++++.|+..|.+...|++. +..|+-+.
T Consensus 730 ~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~--~~aG~~~~ 781 (1049)
T PRK14845 730 VTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEE--VLAGSPIR 781 (1049)
T ss_pred eEEEEEecCcccccccccccccccccccccCCCceEEecCCccc--cCCCCeEE
Confidence 7899999742 2467888888888876555543 35666554
No 68
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.95 E-value=2.3e-27 Score=226.75 Aligned_cols=172 Identities=23% Similarity=0.319 Sum_probs=143.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC----
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 159 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~---- 159 (514)
+||+++||+|||||||+++|++.+|.++.+. .| -.+.+|..+.|++||+|+......+.+.
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~ 65 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL----------AG-----KARYMDSREDEQERGITMKSSAISLYFEYEEE 65 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc----------CC-----ceeeccCCHHHHHhccccccceEEEEEecCcc
Confidence 5899999999999999999999998766432 11 1457999999999999999987666554
Q ss_pred ------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 160 ------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 160 ------~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
++.++|||||||.+|...+.++++.+|++|+|||+..|.. .|+++++..+...++| +|+++||||+
T Consensus 66 ~~~~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~-------~~t~~~l~~~~~~~~p-~ilviNKiD~ 137 (222)
T cd01885 66 DKADGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVC-------VQTETVLRQALKERVK-PVLVINKIDR 137 (222)
T ss_pred cccCCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECCCc
Confidence 7889999999999999999999999999999999999954 6999999999999998 9999999998
Q ss_pred C------CCCchHHHHHHHHhhhhhhhhhccCcc-----cCC--e-e----EEeecccccccc
Q 010278 234 H------TVNWSKERYDEIESKMTPFLKASGYNV-----KKD--V-Q----FLPISGLMGLNM 278 (514)
Q Consensus 234 ~------~~~~~~~~~~~i~~~l~~~l~~~g~~~-----~~~--~-~----iipiSa~~G~gi 278 (514)
. .+++.+.++.++.+++..+++.+.-.. ... + | ++..||+.|+..
T Consensus 138 ~~~e~~~~~~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f 200 (222)
T cd01885 138 LILELKLSPEEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGF 200 (222)
T ss_pred chhhhcCCHHHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEe
Confidence 4 334667889999999999888773210 001 2 3 777899999987
No 69
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.94 E-value=3.8e-26 Score=219.20 Aligned_cols=191 Identities=26% Similarity=0.399 Sum_probs=150.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcch------hHHHHHHHHHhhcCccchhhhhhccCchhhh----hcccEEEeeeE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDD------RTIQKYEKEAKDKSRESWYMAYIMDTNEEER----IKGKTVEVGRA 154 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~------~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~----~~giT~~~~~~ 154 (514)
+|+++||+++|||||+++|.. +..+. ..+.++.++. +.|++++...+.+++..+++ ..+.+......
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~--~~~~~~~~~~~~~~~~~~~E~-~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 77 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ--GELDNGRGKARLNLFRHKHEV-ESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIE 77 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCcCCCCCeEEeehhhhhhhh-hcCchhhhhhhhcccCCCCceecCCCCccccccce
Confidence 489999999999999999953 44433 2455666555 47999988888887765543 12333333334
Q ss_pred EEEeCCeEEEEEeCCCCcchHHHHHHhhh--hcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010278 155 HFETETTRFTILDAPGHKSYVPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 232 (514)
Q Consensus 155 ~~~~~~~~i~liDtPGh~~f~~~~~~g~~--~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D 232 (514)
.++..++.++|+|||||++|.+++++++. .+|++++|||+.+|.. .++++++.++..+++| +|+|+||+|
T Consensus 78 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-------~~d~~~l~~l~~~~ip-~ivvvNK~D 149 (224)
T cd04165 78 ICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-------GMTKEHLGLALALNIP-VFVVVTKID 149 (224)
T ss_pred eeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCC-EEEEEECcc
Confidence 56777899999999999999999999986 7999999999999854 7999999999999999 899999999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCc--------------------ccCCeeEEeeccccccccccccccCCCCCCCc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYN--------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG 292 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~--------------------~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g 292 (514)
+ . ++.++....+++..+|+..|+. ....+|++++|+.+|+|++.
T Consensus 150 ~--~--~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~------------ 213 (224)
T cd04165 150 L--A--PANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDL------------ 213 (224)
T ss_pred c--c--CHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHH------------
Confidence 8 3 3567888888888888755443 12346999999999999987
Q ss_pred ccHHHHhhhccC
Q 010278 293 PCLFEALDRIEI 304 (514)
Q Consensus 293 ~tL~~~l~~l~~ 304 (514)
|.++|..+|+
T Consensus 214 --L~~~L~~lp~ 223 (224)
T cd04165 214 --LHAFLNLLPL 223 (224)
T ss_pred --HHHHHHhcCC
Confidence 6677777765
No 70
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.93 E-value=7.5e-26 Score=222.99 Aligned_cols=174 Identities=26% Similarity=0.320 Sum_probs=141.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
||+++||+|||||||+++|++.+|.+... |+.+ ..++.+|..+.|+++|+|++.....++|.+++++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~------------g~v~-~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~ 67 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKI------------GEVH-GGGATMDFMEQERERGITIQSAATTCFWKDHRIN 67 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCccc------------cccc-CCccccCCCccccCCCcCeeccEEEEEECCEEEE
Confidence 69999999999999999999999976542 1111 1367899999999999999999999999999999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHH
Q 010278 165 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 244 (514)
Q Consensus 165 liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~ 244 (514)
|||||||.+|...+.++++.+|++|+|||+..|+ +.|+.+++..+...++| +++++||||+...+ ++
T Consensus 68 liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~-------~~~t~~~~~~~~~~~~p-~ivviNK~D~~~a~-----~~ 134 (270)
T cd01886 68 IIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGV-------EPQTETVWRQADRYNVP-RIAFVNKMDRTGAD-----FF 134 (270)
T ss_pred EEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCC-------CHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC-----HH
Confidence 9999999999999999999999999999999985 47999999999999999 78899999995433 34
Q ss_pred HHHhhhhhhhhhccCcccCCeeEEeecccccc-ccccccccCCCCC
Q 010278 245 EIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRVDKSLCPW 289 (514)
Q Consensus 245 ~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~-gi~~l~~~~~~~w 289 (514)
.+.++++..+.... -..++|+|+..+. |+.++.......|
T Consensus 135 ~~~~~l~~~l~~~~-----~~~~~Pisa~~~f~g~vd~~~~~a~~~ 175 (270)
T cd01886 135 RVVEQIREKLGANP-----VPLQLPIGEEDDFRGVVDLIEMKALYW 175 (270)
T ss_pred HHHHHHHHHhCCCc-----eEEEeccccCCCceEEEEccccEEEec
Confidence 55566665554332 2357899997653 6666655444444
No 71
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.93 E-value=7.1e-25 Score=206.17 Aligned_cols=163 Identities=26% Similarity=0.452 Sum_probs=127.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC----
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 159 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~---- 159 (514)
+||+++||+|+|||||+++|+...+ .+.+|....++++|+|++.....+.+.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~------------------------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~ 56 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIAS------------------------TAAFDKNPQSQERGITLDLGFSSFYVDKPKH 56 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccc------------------------hhhhccCHHHHHcCCeeeecceEEEeccccc
Confidence 4899999999999999999954311 134566678889999999988877765
Q ss_pred ----------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe
Q 010278 160 ----------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 229 (514)
Q Consensus 160 ----------~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviN 229 (514)
++.++|+|||||.+|.+.+..++..+|++++|+|+..+.. .++.+++..+...+.| +++++|
T Consensus 57 ~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~-------~~~~~~~~~~~~~~~~-~iiv~N 128 (192)
T cd01889 57 LRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQ-------TQTAECLVIGEILCKK-LIVVLN 128 (192)
T ss_pred ccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCC-EEEEEE
Confidence 7899999999999999999999999999999999998743 4777777777778888 899999
Q ss_pred eccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 230 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 230 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
|+|+...++.+..++++.+.+...+...++. .++++|+||++|.|+.++
T Consensus 129 K~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~vi~iSa~~g~gi~~L 177 (192)
T cd01889 129 KIDLIPEEERERKIEKMKKKLQKTLEKTRFK---NSPIIPVSAKPGGGEAEL 177 (192)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHhcCcC---CCCEEEEeccCCCCHHHH
Confidence 9999432222233445555554445444443 578999999999999984
No 72
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.93 E-value=5e-25 Score=209.07 Aligned_cols=157 Identities=28% Similarity=0.392 Sum_probs=124.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC----
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 159 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~---- 159 (514)
+||+++||+|||||||+.+|. +. .+|..+.|..+|+|+..++..+.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~---~~-------------------------~~~~~~~e~~~~~s~~~~~~~~~~~~~~~ 52 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALS---GV-------------------------WTVRFKEELERNITIKLGYANAKIYKCPN 52 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CC-------------------------CCCCCCeeEEcCCceeecccccccccccC
Confidence 589999999999999999982 11 1455567788899888887766553
Q ss_pred -----------------------C------eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH
Q 010278 160 -----------------------T------TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR 210 (514)
Q Consensus 160 -----------------------~------~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~ 210 (514)
+ +.++|||||||++|.+.+++++..+|++|+|||+.++. ...++.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~------~~~~t~ 126 (203)
T cd01888 53 CGCPRPYCYRSKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPC------PQPQTS 126 (203)
T ss_pred cCCCCccccccccccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCC------CCcchH
Confidence 3 78999999999999999999999999999999999752 125889
Q ss_pred HHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 211 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 211 e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
+++..+...+++++|+++||+|+. + ...+....+++..+++.... ..++++++||++|.|+.++
T Consensus 127 ~~l~~~~~~~~~~iiivvNK~Dl~--~--~~~~~~~~~~i~~~~~~~~~---~~~~i~~vSA~~g~gi~~L 190 (203)
T cd01888 127 EHLAALEIMGLKHIIIVQNKIDLV--K--EEQALENYEQIKKFVKGTIA---ENAPIIPISAQLKYNIDVL 190 (203)
T ss_pred HHHHHHHHcCCCcEEEEEEchhcc--C--HHHHHHHHHHHHHHHhcccc---CCCcEEEEeCCCCCCHHHH
Confidence 999988888887689999999993 2 23444555566666654432 1468999999999999985
No 73
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.4e-25 Score=223.21 Aligned_cols=305 Identities=23% Similarity=0.308 Sum_probs=218.1
Q ss_pred cccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEE
Q 010278 76 TEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH 155 (514)
Q Consensus 76 ~~~~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~ 155 (514)
.....++.+|+.++.|+|||||||.+.|....|.+.... .| -..++|+.+.|.+|||||....++
T Consensus 12 lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~ak----------aG-----e~Rf~DtRkDEQeR~iTIKStAIS 76 (842)
T KOG0469|consen 12 LMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAK----------AG-----ETRFTDTRKDEQERGITIKSTAIS 76 (842)
T ss_pred HhccccccccceEEEEecCCcchhhHHHHHhhceeeecc----------cC-----CccccccccchhhcceEeeeeeee
Confidence 344677889999999999999999999998888876321 22 245789999999999999998776
Q ss_pred EEe----------------CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc
Q 010278 156 FET----------------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL 219 (514)
Q Consensus 156 ~~~----------------~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~ 219 (514)
+.. ++..++|||.|||-+|......+++..|+|++|||+-.|++ -||+..|.++...
T Consensus 77 l~~e~~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvC-------VQTETVLrQA~~E 149 (842)
T KOG0469|consen 77 LFFEMSDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVC-------VQTETVLRQAIAE 149 (842)
T ss_pred ehhhhhHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceE-------echHHHHHHHHHh
Confidence 422 35679999999999999999999999999999999999988 5999999999999
Q ss_pred CCCeEEEEEeeccCCC--CCchH----HHHHHHHhhhhhhhhhccCcccCCeeEEe-------eccccccccccc-----
Q 010278 220 GVTKLLLVVNKMDDHT--VNWSK----ERYDEIESKMTPFLKASGYNVKKDVQFLP-------ISGLMGLNMKTR----- 281 (514)
Q Consensus 220 ~vp~~IvviNK~D~~~--~~~~~----~~~~~i~~~l~~~l~~~g~~~~~~~~iip-------iSa~~G~gi~~l----- 281 (514)
.+. -++++||||+.- ..+++ +.|+.+.+.+...+..+|..+.+++.+.| .|+++|++..-.
T Consensus 150 RIk-Pvlv~NK~DRAlLELq~~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~ 228 (842)
T KOG0469|consen 150 RIK-PVLVMNKMDRALLELQLSQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEM 228 (842)
T ss_pred hcc-ceEEeehhhHHHHhhcCCHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHH
Confidence 988 578999999831 22232 33555555555555555553333444443 588888876311
Q ss_pred ---------------------cccCCCCCCC-------------------------------------------------
Q 010278 282 ---------------------VDKSLCPWWN------------------------------------------------- 291 (514)
Q Consensus 282 ---------------------~~~~~~~w~~------------------------------------------------- 291 (514)
+....-+|-.
T Consensus 229 Y~~KF~~~~~kmm~~LWg~~~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk 308 (842)
T KOG0469|consen 229 YAKKFGIDVRKMMNRLWGDNFFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLK 308 (842)
T ss_pred HHHHhCCcHHHHHHHhhcccccCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceec
Confidence 0111122321
Q ss_pred ----------------------cccHHHHhh-hccCC-------------------------CCCCCCCceEEEEEEEc-
Q 010278 292 ----------------------GPCLFEALD-RIEIT-------------------------PRDPNGPFRMPIIDKFK- 322 (514)
Q Consensus 292 ----------------------g~tL~~~l~-~l~~~-------------------------~~~~~~p~~~~i~~~~~- 322 (514)
+.+|++.+. .+|+| .++++.|+.|+|+...+
T Consensus 309 ~~~kd~eGK~LlK~vMr~wLPAadallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPt 388 (842)
T KOG0469|consen 309 GDEKDLEGKALLKVVMRKWLPAADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPT 388 (842)
T ss_pred cccccccchHHHHHHHHHhcchHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeecccc
Confidence 223333322 23433 45788999999999874
Q ss_pred -cCCeE-EEEEEeeeeeecCCEEEEecCCc------EEEEEEEE-------ECCeeeeecCCCCeEEEEccCCCccccee
Q 010278 323 -DMGTV-VMGKVESGSVREGDSLLVMPNKA------QVKVLAIY-------CDDNRVRHAGPGENLRIRLSGIEEEDILS 387 (514)
Q Consensus 323 -~~G~v-~~g~v~sG~l~~gd~v~~~p~~~------~~~V~si~-------~~~~~v~~a~aG~~v~~~l~~~~~~~i~~ 387 (514)
+.|+. +.|||++|.+..|+++++..-+. ..-+|+|+ +.-++++.+.+|.+++ |-|++..-++.
T Consensus 389 sDkgRFyAFGRVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiG--lvGvDqfLvKt 466 (842)
T KOG0469|consen 389 SDKGRFYAFGRVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIG--LVGVDQFLVKT 466 (842)
T ss_pred CCCceEEEEeeeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEE--EeehhHhhhcc
Confidence 67886 78999999999999999975441 12234443 2357899999999999 57888877788
Q ss_pred eeEEccCCCCccceeEEE
Q 010278 388 GFVLSSVAKPVAAVTEFI 405 (514)
Q Consensus 388 G~vl~~~~~~~~~~~~f~ 405 (514)
|.+-......-..+-.|.
T Consensus 467 GTiTt~e~AHNmrvMKFS 484 (842)
T KOG0469|consen 467 GTITTSEAAHNMRVMKFS 484 (842)
T ss_pred CceeehhhhccceEEEee
Confidence 877655443323334443
No 74
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.92 E-value=5e-24 Score=206.43 Aligned_cols=144 Identities=33% Similarity=0.463 Sum_probs=122.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
||+++||+|+|||||+++|++.+|.+... |+-. ...+.+|..+.|+.+|+|+......+.+.+++++
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~------------g~v~-~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~ 67 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKL------------GSVD-KGTTRTDTMELERQRGITIFSAVASFQWEDTKVN 67 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCcccc------------cccc-CCcccCCCchhHhhCCCceeeeeEEEEECCEEEE
Confidence 69999999999999999999999876542 1111 1235688899999999999999999999999999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHH
Q 010278 165 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 244 (514)
Q Consensus 165 liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~ 244 (514)
|+|||||.+|...+.++++.+|++|+|+|+..|. ..++++++.++...++| +++++||+|+..+++ ...++
T Consensus 68 liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~-------~~~~~~~~~~~~~~~~P-~iivvNK~D~~~a~~-~~~~~ 138 (237)
T cd04168 68 LIDTPGHMDFIAEVERSLSVLDGAILVISAVEGV-------QAQTRILWRLLRKLNIP-TIIFVNKIDRAGADL-EKVYQ 138 (237)
T ss_pred EEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCC-------CHHHHHHHHHHHHcCCC-EEEEEECccccCCCH-HHHHH
Confidence 9999999999999999999999999999999984 36899999999999999 789999999976654 34555
Q ss_pred HHHhhh
Q 010278 245 EIESKM 250 (514)
Q Consensus 245 ~i~~~l 250 (514)
++.+.+
T Consensus 139 ~i~~~~ 144 (237)
T cd04168 139 EIKEKL 144 (237)
T ss_pred HHHHHH
Confidence 555544
No 75
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=1.5e-23 Score=197.45 Aligned_cols=171 Identities=27% Similarity=0.336 Sum_probs=136.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeE
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 162 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~ 162 (514)
.++|+++|++++|||||+++|++..+.+..... .-.+.+|..+.++.+|+|+......+.+.+..
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~---------------~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~ 66 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEE---------------VEERVMDSNDLERERGITILAKNTAVTYKDTK 66 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCc---------------ccccccccchhHHhcccccccceeEEEECCEE
Confidence 579999999999999999999876665543210 01355778888899999999988889999999
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHH
Q 010278 163 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 242 (514)
Q Consensus 163 i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~ 242 (514)
++|+|||||++|...+...++.+|++|+|+|+..+.+ .++.+++..+...++| +++|+||+|+.. .+
T Consensus 67 ~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~-------~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~-----~~ 133 (194)
T cd01891 67 INIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPM-------PQTRFVLKKALELGLK-PIVVINKIDRPD-----AR 133 (194)
T ss_pred EEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCC-EEEEEECCCCCC-----CC
Confidence 9999999999999999999999999999999998753 4777777777788999 889999999943 23
Q ss_pred HHHHHhhhhhhhhhccCcc-cCCeeEEeeccccccccccc
Q 010278 243 YDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 243 ~~~i~~~l~~~l~~~g~~~-~~~~~iipiSa~~G~gi~~l 281 (514)
+....+++..+++.++... ..+++++++||++|.|+.++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 134 PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred HHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 4455566666665554321 12568999999999999875
No 76
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.91 E-value=2.6e-23 Score=198.81 Aligned_cols=165 Identities=20% Similarity=0.322 Sum_probs=133.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC----
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 159 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~---- 159 (514)
++|+++||+|+|||||+++|++..+.+..+ |+.....++.+|..+.|+.+|+|+......+.+.
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~------------~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~ 68 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPS------------GKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKG 68 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCccc------------ccccCCceeECCCCHHHHHcCccccccceeEEEEcCCC
Confidence 479999999999999999999988875432 2333445667899999999999999888777553
Q ss_pred -CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCC---
Q 010278 160 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT--- 235 (514)
Q Consensus 160 -~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~--- 235 (514)
.+.++|+|||||.+|...+..++..+|++|+|+|+.++.. .++.+++..+...+.| +++++||+|+..
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~-------~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~~ 140 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVT-------SNTERLIRHAILEGLP-IVLVINKIDRLILEL 140 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECcccCcccc
Confidence 4789999999999999999999999999999999998743 4677778888778888 899999999841
Q ss_pred ---CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEee
Q 010278 236 ---VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPI 270 (514)
Q Consensus 236 ---~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipi 270 (514)
..+...+++++++++..+++.++++. .+.|+|+
T Consensus 141 ~l~~~~~~~~l~~~i~~~n~~~~~~~~~~--~~~~~p~ 176 (213)
T cd04167 141 KLPPNDAYFKLRHIIDEVNNIIASFSTTL--SFLFSPE 176 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhcCCC--ceEeccC
Confidence 12344688889999999999887752 3456665
No 77
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=7.7e-23 Score=214.69 Aligned_cols=177 Identities=21% Similarity=0.352 Sum_probs=141.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
.....+|++++.|+|||||||.+.|+..+|.|..+-..+ -.+||+.++|..||||...+.+....
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagk---------------irfld~redeq~rgitmkss~is~~~ 69 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGK---------------IRFLDTREDEQTRGITMKSSAISLLH 69 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccc---------------eeeccccchhhhhceeeecccccccc
Confidence 345679999999999999999999999999887764322 24689999999999999999999888
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC-
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN- 237 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~- 237 (514)
+++.++|||+|||-+|.....++++.+|.++++||+.+|++ .||...++++-..|.+ +|+||||||+.-..
T Consensus 70 ~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~-------~qt~~vlrq~~~~~~~-~~lvinkidrl~~el 141 (887)
T KOG0467|consen 70 KDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVC-------SQTYAVLRQAWIEGLK-PILVINKIDRLITEL 141 (887)
T ss_pred CceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccc-------hhHHHHHHHHHHccCc-eEEEEehhhhHHHHH
Confidence 99999999999999999999999999999999999999987 7999999999999998 89999999952111
Q ss_pred --chHHHHHHH---Hhhhhhhhh-------------------hccCcccCCeeEEeeccccccccc
Q 010278 238 --WSKERYDEI---ESKMTPFLK-------------------ASGYNVKKDVQFLPISGLMGLNMK 279 (514)
Q Consensus 238 --~~~~~~~~i---~~~l~~~l~-------------------~~g~~~~~~~~iipiSa~~G~gi~ 279 (514)
...+.|..+ .++++..+. ..-|++. +-.++..||..|+|+.
T Consensus 142 ~lsp~ea~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~-kgNVif~~A~~~~~f~ 206 (887)
T KOG0467|consen 142 KLSPQEAYEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPE-DGNVIFASALDGWGFG 206 (887)
T ss_pred hcChHHHHHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCC-CCcEEEEEeccccccc
Confidence 123444433 333333333 1122222 3367888999999874
No 78
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=9.2e-25 Score=214.70 Aligned_cols=275 Identities=21% Similarity=0.292 Sum_probs=196.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+.+||+|+.|+|+||||...++||..|.+..-. .--....++|+...||+||||++.+...|.|++
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g-------------~vddgdtvtdfla~erergitiqsaav~fdwkg 101 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAG-------------DVDDGDTVTDFLAIERERGITIQSAAVNFDWKG 101 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhccc-------------ccCCCchHHHHHHHHHhcCceeeeeeeeccccc
Confidence 4678999999999999999999999998754311 111235678889999999999999999999999
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~ 240 (514)
+++++||||||.+|.-...+.++.-|+++.|+|++.|+ ++||...|+++..+++| -++++||||...+++.
T Consensus 102 ~rinlidtpghvdf~leverclrvldgavav~dasagv-------e~qtltvwrqadk~~ip-~~~finkmdk~~anfe- 172 (753)
T KOG0464|consen 102 HRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGV-------EAQTLTVWRQADKFKIP-AHCFINKMDKLAANFE- 172 (753)
T ss_pred ceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCc-------ccceeeeehhccccCCc-hhhhhhhhhhhhhhhh-
Confidence 99999999999999999999999999999999999995 48999999999999999 6789999998666542
Q ss_pred HHHHHHHhhhhh--------------------------------------------------------------------
Q 010278 241 ERYDEIESKMTP-------------------------------------------------------------------- 252 (514)
Q Consensus 241 ~~~~~i~~~l~~-------------------------------------------------------------------- 252 (514)
...+.+.+.+..
T Consensus 173 ~avdsi~ekl~ak~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~ql 252 (753)
T KOG0464|consen 173 NAVDSIEEKLGAKALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQL 252 (753)
T ss_pred hHHHHHHHHhCCceEEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 112222221111
Q ss_pred ----------hhhhccCc------------------ccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhh-hcc
Q 010278 253 ----------FLKASGYN------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALD-RIE 303 (514)
Q Consensus 253 ----------~l~~~g~~------------------~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~-~l~ 303 (514)
+|.++.-+ ....+|+..-||.+..||..+++. +. .+|
T Consensus 253 ad~~~dfad~~ldef~~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqpllda--------------vtmylp 318 (753)
T KOG0464|consen 253 ADLDADFADKFLDEFDENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDA--------------VTMYLP 318 (753)
T ss_pred hhccHHHHHHHHHHhhccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhh--------------hhhccC
Confidence 00000000 022356777788888888775443 22 234
Q ss_pred CCCCCCCCCceEE-------EEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC----CeeeeecCCC
Q 010278 304 ITPRDPNGPFRMP-------IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPG 370 (514)
Q Consensus 304 ~~~~~~~~p~~~~-------i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG 370 (514)
.|......-+..+ ...+. |.+|..++-|+++|+|+.+-.|....++.+-.+..+... +..+++..+|
T Consensus 319 speernyeflqwykddlcalafkvlhdkqrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsag 398 (753)
T KOG0464|consen 319 SPEERNYEFLQWYKDDLCALAFKVLHDKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAG 398 (753)
T ss_pred ChhhcchHHHhhhhhhHHHHhhhhhcccccCceeEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhhcccc
Confidence 4332211111111 12222 468999999999999999999998877776666666432 5678899999
Q ss_pred CeEEEEccCCCcccceeeeEEccCC
Q 010278 371 ENLRIRLSGIEEEDILSGFVLSSVA 395 (514)
Q Consensus 371 ~~v~~~l~~~~~~~i~~G~vl~~~~ 395 (514)
.+.-. .|+.. ...||+++...
T Consensus 399 nialt--~glk~--tatgdtivask 419 (753)
T KOG0464|consen 399 NIALT--AGLKH--TATGDTIVASK 419 (753)
T ss_pred cEEEE--eccee--eccCCeEEecc
Confidence 87642 24432 45788887654
No 79
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.90 E-value=5.9e-23 Score=190.32 Aligned_cols=164 Identities=23% Similarity=0.390 Sum_probs=125.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe-----
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET----- 158 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~----- 158 (514)
+||+++|++|+|||||+++|++..|.+.++. ...+.+++.+.++.+|+|.......+.+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~ 64 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKRE----------------MKEQVLDSMDLERERGITIKAQTVRLNYKAKDG 64 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCC----------------CceEeccCChhHHHCCCeEecceEEEEEecCCC
Confidence 5899999999999999999998877665321 1134567777888999998877665543
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
.+..++|+|||||.+|...+.+++..+|++|+|+|+..+.. .++.+++..+...++| +|+++||+|+....
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~-------~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~- 135 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVE-------AQTLANFYLALENNLE-IIPVINKIDLPSAD- 135 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCcc-------HhhHHHHHHHHHcCCC-EEEEEECCCCCcCC-
Confidence 46778999999999999999999999999999999998742 4677777777778898 89999999984321
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
.....+++.. .+++. ..+++++||++|.|+.+++
T Consensus 136 ----~~~~~~~~~~---~~~~~---~~~~~~~Sa~~g~gi~~l~ 169 (179)
T cd01890 136 ----PERVKQQIED---VLGLD---PSEAILVSAKTGLGVEDLL 169 (179)
T ss_pred ----HHHHHHHHHH---HhCCC---cccEEEeeccCCCCHHHHH
Confidence 1222233322 23332 2358999999999999853
No 80
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.89 E-value=1.6e-22 Score=199.11 Aligned_cols=138 Identities=27% Similarity=0.412 Sum_probs=116.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeE
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 162 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~ 162 (514)
.+||+++||+|+|||||+++|++.+|.++...... ++. ......+|..+.|+++|+|+......+++.++.
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~--------~~~-~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~ 72 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVK--------ARK-SRKHATSDWMEIEKQRGISVTSSVMQFEYRDCV 72 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceec--------ccc-cCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEE
Confidence 48999999999999999999999999876432100 000 112335888999999999999999999999999
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010278 163 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 163 i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~ 237 (514)
++|||||||.+|...+.++++.+|++|+|+|+..+. ..++..++.++...++| +++++||||+...+
T Consensus 73 i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~-------~~~~~~i~~~~~~~~~P-~iivvNK~D~~~a~ 139 (267)
T cd04169 73 INLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGV-------EPQTRKLFEVCRLRGIP-IITFINKLDREGRD 139 (267)
T ss_pred EEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCc-------cHHHHHHHHHHHhcCCC-EEEEEECCccCCCC
Confidence 999999999999999999999999999999999884 35888889888889999 88999999985543
No 81
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.89 E-value=2.9e-22 Score=182.35 Aligned_cols=157 Identities=28% Similarity=0.483 Sum_probs=121.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC-CeE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-TTR 162 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~-~~~ 162 (514)
.+|+++|++|+|||||+++|.... .+....+..+++|++.....+.+. +..
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~----------------------------~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 52 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIE----------------------------TDRLPEEKKRGITIDLGFAYLDLPSGKR 52 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcc----------------------------cccchhhhccCceEEeeeEEEEecCCcE
Confidence 379999999999999999994211 011123445788998888777776 789
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHH
Q 010278 163 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 242 (514)
Q Consensus 163 i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~ 242 (514)
+.||||||+++|...+...++.+|++|+|+|++++.. .++.+++..+...+.+++++++||+|+.. ...
T Consensus 53 ~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~-------~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~----~~~ 121 (164)
T cd04171 53 LGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIM-------PQTREHLEILELLGIKRGLVVLTKADLVD----EDW 121 (164)
T ss_pred EEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCcc-------HhHHHHHHHHHHhCCCcEEEEEECccccC----HHH
Confidence 9999999999999988888999999999999988643 57888888777778744999999999932 223
Q ss_pred HHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 243 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 243 ~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
+....+++...++..++. ..+++++||++|.|+.+++
T Consensus 122 ~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~l~ 158 (164)
T cd04171 122 LELVEEEIRELLAGTFLA---DAPIFPVSAVTGEGIEELK 158 (164)
T ss_pred HHHHHHHHHHHHHhcCcC---CCcEEEEeCCCCcCHHHHH
Confidence 444555666666654332 4689999999999999853
No 82
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
Probab=99.89 E-value=9.3e-23 Score=173.35 Aligned_cols=107 Identities=59% Similarity=0.870 Sum_probs=98.9
Q ss_pred ceeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcceEEee
Q 010278 400 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 479 (514)
Q Consensus 400 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~pi~~e 479 (514)
++++|+|++.||+. .+++|.+||++++|+|+.+++|+|.+|.+++|+++|+..+++|++|++|+.+.|+|++++|+|+|
T Consensus 2 ~~~~F~A~i~vl~~-~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~d~~~g~~~~~~p~~l~~g~~a~v~i~~~~pi~~e 80 (108)
T cd03704 2 VVTEFEAQIAILEL-KRSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIARLETTGPICLE 80 (108)
T ss_pred cccEEEEEEEEEeC-CCCcCcCCCEEEEEEcccEEeEEEehhhhhhccccCcccccCCcEeCCCCEEEEEEEeCCcEEEE
Confidence 46889999999763 12678999999999999999999999999999998887778899999999999999999999999
Q ss_pred ecccccccceEEEEeCCeEEEEEEEEec
Q 010278 480 KFADFAQLGRFTLRTEGKTVAVGKVTEL 507 (514)
Q Consensus 480 ~~~~~~~lgrfilr~~g~tva~G~I~~v 507 (514)
+|++++.||||+||++|+|+|+|+|+++
T Consensus 81 ~~~~~~~lGRf~lR~~g~Tva~G~V~~~ 108 (108)
T cd03704 81 KFEDFPQLGRFTLRDEGKTIAIGKVLKL 108 (108)
T ss_pred EcccCCCcccEEEEeCCCEEEEEEEEEC
Confidence 9999999999999999999999999764
No 83
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Probab=99.88 E-value=7.7e-22 Score=167.52 Aligned_cols=106 Identities=30% Similarity=0.433 Sum_probs=98.8
Q ss_pred ceeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcceEEee
Q 010278 400 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 479 (514)
Q Consensus 400 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~pi~~e 479 (514)
.+++|+|+++|++. ..+|.+||++.+|+++..++|+|.+|.+++|.+|++..+++|++|++|+.|.|+|.+++|+|+|
T Consensus 2 ~~~~f~A~v~~l~~--~~pl~~G~~~~l~~~t~~~~~~v~~I~~~~d~~t~~~~~~~~~~l~~~~~a~v~l~~~~pi~~e 79 (107)
T cd04093 2 SSTRFEARILTFNV--DKPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIVEIELERPIPLE 79 (107)
T ss_pred cccEEEEEEEEECC--CcccCCCCcEEEEecccEEeEEEEEeeEEeccCCCcEeccCCcCcCCCCEEEEEEEECCeEEEE
Confidence 46889999999542 3789999999999999999999999999999999987777899999999999999999999999
Q ss_pred ecccccccceEEEEeCCeEEEEEEEEec
Q 010278 480 KFADFAQLGRFTLRTEGKTVAVGKVTEL 507 (514)
Q Consensus 480 ~~~~~~~lgrfilr~~g~tva~G~I~~v 507 (514)
+|.+++.+|||+||++|.|+|+|+|+++
T Consensus 80 ~~~~~~~~Grfilr~~~~Tva~G~I~~i 107 (107)
T cd04093 80 LFKDNKELGRVVLRRDGETIAAGLVTEI 107 (107)
T ss_pred EcccCCCcceEEEEcCCCEEEEEEEEeC
Confidence 9999999999999999999999999875
No 84
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=3.8e-21 Score=198.65 Aligned_cols=157 Identities=19% Similarity=0.218 Sum_probs=121.9
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEE
Q 010278 78 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 157 (514)
Q Consensus 78 ~~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~ 157 (514)
..+.+.+||+++||-.||||+|++.|...+.---.. ..-.-...+|.+..|++||.+|......+-
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~--------------~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~ 188 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSK--------------NTEADLRYTDTLFYEQERGCSIKSTPVTLV 188 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccc--------------cccccccccccchhhHhcCceEeecceEEE
Confidence 446688999999999999999999997765521100 000112457888999999999998766643
Q ss_pred e-----CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010278 158 T-----ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 232 (514)
Q Consensus 158 ~-----~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D 232 (514)
. ..+.++|+|||||-+|...+.++++.+|+++||||+.+|++ -+|.+.+..+.+.+.| ++|||||+|
T Consensus 189 l~D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVm-------lntEr~ikhaiq~~~~-i~vviNKiD 260 (971)
T KOG0468|consen 189 LSDSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVM-------LNTERIIKHAIQNRLP-IVVVINKVD 260 (971)
T ss_pred EecCcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCce-------eeHHHHHHHHHhccCc-EEEEEehhH
Confidence 3 45789999999999999999999999999999999999987 5999999999999999 999999999
Q ss_pred CCCC------CchHHHHHHHHhhhhhhhhh
Q 010278 233 DHTV------NWSKERYDEIESKMTPFLKA 256 (514)
Q Consensus 233 ~~~~------~~~~~~~~~i~~~l~~~l~~ 256 (514)
+.-. .....++..+.+++...+..
T Consensus 261 RLilELkLPP~DAY~KLrHii~~iN~~is~ 290 (971)
T KOG0468|consen 261 RLILELKLPPMDAYYKLRHIIDEINNLIST 290 (971)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHhcchhhh
Confidence 7311 11234455666666654443
No 85
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=1.5e-21 Score=197.91 Aligned_cols=158 Identities=25% Similarity=0.351 Sum_probs=137.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
..+++|||+|+||+|||||+|+|+.....+... ..|.|++.....|++++
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~------------------------------~aGTTRD~I~~~~e~~~ 225 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSD------------------------------IAGTTRDSIDIEFERDG 225 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecC------------------------------CCCccccceeeeEEECC
Confidence 367999999999999999999998776655433 38999999999999999
Q ss_pred eEEEEEeCCCCcc----------h-HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe
Q 010278 161 TRFTILDAPGHKS----------Y-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 229 (514)
Q Consensus 161 ~~i~liDtPGh~~----------f-~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviN 229 (514)
+.|.||||+|.++ | +..++.++..+|+++||+||.+|.. .|..+.+.++...|.+ +|||+|
T Consensus 226 ~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~-------~qD~~ia~~i~~~g~~-~vIvvN 297 (444)
T COG1160 226 RKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGIS-------EQDLRIAGLIEEAGRG-IVIVVN 297 (444)
T ss_pred eEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCch-------HHHHHHHHHHHHcCCC-eEEEEE
Confidence 9999999999543 3 4555677899999999999999965 5999999999999999 899999
Q ss_pred eccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 230 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 230 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|||+ .+-+...+++.+.++...|..++|. |++++||++|.|+.++++
T Consensus 298 KWDl--~~~~~~~~~~~k~~i~~~l~~l~~a-----~i~~iSA~~~~~i~~l~~ 344 (444)
T COG1160 298 KWDL--VEEDEATMEEFKKKLRRKLPFLDFA-----PIVFISALTGQGLDKLFE 344 (444)
T ss_pred cccc--CCchhhHHHHHHHHHHHHhccccCC-----eEEEEEecCCCChHHHHH
Confidence 9999 4435577888889999999988875 999999999999998765
No 86
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.86 E-value=8.7e-21 Score=176.77 Aligned_cols=170 Identities=31% Similarity=0.518 Sum_probs=132.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
+|+++|.+|+|||||+++|+.......... ....+.++....+..+|+|++.....+.+.+..++
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDG---------------TVEETFLDVLKEERERGITIKSGVATFEWPDRRVN 65 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCC---------------ceecccccCCHHHHHcCCCeecceEEEeeCCEEEE
Confidence 589999999999999999977655432211 00113455566778899999988888888899999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHH
Q 010278 165 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 244 (514)
Q Consensus 165 liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~ 244 (514)
|+||||+.+|...+...+..+|++++|+|+.++.. .+..+.+..+...+.| +++++||+|+.. +..+.
T Consensus 66 liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~~-i~iv~nK~D~~~----~~~~~ 133 (189)
T cd00881 66 FIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQ-------PQTREHLRIAREGGLP-IIVAINKIDRVG----EEDLE 133 (189)
T ss_pred EEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCc-------HHHHHHHHHHHHCCCC-eEEEEECCCCcc----hhcHH
Confidence 99999999999999999999999999999998743 4777888888888888 999999999942 23455
Q ss_pred HHHhhhhhhhhhccCc--------ccCCeeEEeeccccccccccc
Q 010278 245 EIESKMTPFLKASGYN--------VKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 245 ~i~~~l~~~l~~~g~~--------~~~~~~iipiSa~~G~gi~~l 281 (514)
...+.+...++..+.. .....+++++||++|.|+.++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l 178 (189)
T cd00881 134 EVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEEL 178 (189)
T ss_pred HHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHH
Confidence 5666666666665431 012579999999999999985
No 87
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=99.86 E-value=1.8e-21 Score=164.33 Aligned_cols=102 Identities=33% Similarity=0.624 Sum_probs=96.2
Q ss_pred ceeEEEEEEEEeccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcceEEe
Q 010278 400 AVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICT 478 (514)
Q Consensus 400 ~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~pi~~ 478 (514)
.+++|+|+++|| ++ .+|.+||++.+|+++.+++|+|.+|.+++|.++++..+++|++|++|+.+.|+|++++|+|+
T Consensus 2 ~~~~f~A~v~~l---~~~~pl~~G~~~~~~~~t~~~~~~I~~i~~~~d~~t~~~~~~~~~~l~~n~~a~v~l~~~~pi~~ 78 (104)
T cd03705 2 VAESFTAQVIVL---NHPGQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIVKIVPQKPLVV 78 (104)
T ss_pred cccEEEEEEEEE---CCCCcccCCceEEEEeccceEeEEEEhhhhhhccccCCccccCcCccCCCCEEEEEEEECCeeEE
Confidence 368899999995 45 78999999999999999999999999999999998777789999999999999999999999
Q ss_pred eecccccccceEEEEeCCeEEEEEEE
Q 010278 479 EKFADFAQLGRFTLRTEGKTVAVGKV 504 (514)
Q Consensus 479 e~~~~~~~lgrfilr~~g~tva~G~I 504 (514)
|+|.+++.+|||+|||+|.|+|+|+|
T Consensus 79 e~~~~~~~lgrf~lrd~~~Tva~G~v 104 (104)
T cd03705 79 ETFSEYPPLGRFAVRDMGQTVAVGIV 104 (104)
T ss_pred EEcccCCCccCEEEEeCCCEEEEEEC
Confidence 99999999999999999999999986
No 88
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.85 E-value=1.5e-21 Score=175.03 Aligned_cols=144 Identities=20% Similarity=0.301 Sum_probs=99.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
++|+++|+||+|||||+|+|.+.... .....|.|++.....+.+.+..+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~-------------------------------v~n~pG~Tv~~~~g~~~~~~~~~ 49 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQK-------------------------------VGNWPGTTVEKKEGIFKLGDQQV 49 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEE-------------------------------EEESTTSSSEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCce-------------------------------ecCCCCCCeeeeeEEEEecCceE
Confidence 47999999999999999999433211 22348999999999999999999
Q ss_pred EEEeCCCCcch---------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCC
Q 010278 164 TILDAPGHKSY---------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 234 (514)
Q Consensus 164 ~liDtPGh~~f---------~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~ 234 (514)
.|+|+||..++ ....+. ...+|++|+|+||++- .+....+..+..+|+| +|+|+||||+.
T Consensus 50 ~lvDlPG~ysl~~~s~ee~v~~~~l~-~~~~D~ii~VvDa~~l---------~r~l~l~~ql~e~g~P-~vvvlN~~D~a 118 (156)
T PF02421_consen 50 ELVDLPGIYSLSSKSEEERVARDYLL-SEKPDLIIVVVDATNL---------ERNLYLTLQLLELGIP-VVVVLNKMDEA 118 (156)
T ss_dssp EEEE----SSSSSSSHHHHHHHHHHH-HTSSSEEEEEEEGGGH---------HHHHHHHHHHHHTTSS-EEEEEETHHHH
T ss_pred EEEECCCcccCCCCCcHHHHHHHHHh-hcCCCEEEEECCCCCH---------HHHHHHHHHHHHcCCC-EEEEEeCHHHH
Confidence 99999995333 111111 3589999999999863 2556666777788999 99999999983
Q ss_pred CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 235 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
....-....+ .+. +.+ ++|++|+||++|.|++++.
T Consensus 119 ~~~g~~id~~----~Ls---~~L------g~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 119 ERKGIEIDAE----KLS---ERL------GVPVIPVSARTGEGIDELK 153 (156)
T ss_dssp HHTTEEE-HH----HHH---HHH------TS-EEEEBTTTTBTHHHHH
T ss_pred HHcCCEECHH----HHH---HHh------CCCEEEEEeCCCcCHHHHH
Confidence 2111111122 222 222 3699999999999999853
No 89
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.84 E-value=4.7e-20 Score=168.74 Aligned_cols=155 Identities=31% Similarity=0.408 Sum_probs=113.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC---C
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---T 160 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~---~ 160 (514)
+.|+++|++|+|||||+++|...... .....++|.+.....+... +
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~ 49 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVA-------------------------------AGEAGGITQHIGAFEVPAEVLKI 49 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccc-------------------------------cccCCCeEEeeccEEEecccCCc
Confidence 46999999999999999999432110 1123567777776677664 7
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~ 240 (514)
+.++|+||||+..|...+..++..+|++++|+|+..+.. .++.+.+..+...++| +++++||+|+. +...
T Consensus 50 ~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~ivv~NK~Dl~--~~~~ 119 (168)
T cd01887 50 PGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVM-------PQTIEAIKLAKAANVP-FIVALNKIDKP--NANP 119 (168)
T ss_pred ceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCC-EEEEEEceecc--cccH
Confidence 899999999999998888888899999999999998743 5788888888889999 89999999984 2222
Q ss_pred HHHHHHHhhhhhhh-hhccCcccCCeeEEeeccccccccccccc
Q 010278 241 ERYDEIESKMTPFL-KASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 241 ~~~~~i~~~l~~~l-~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
..+......+.... +..+ ..++++++||++|.|+.++++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~ 159 (168)
T cd01887 120 ERVKNELSELGLQGEDEWG----GDVQIVPTSAKTGEGIDDLLE 159 (168)
T ss_pred HHHHHHHHHhhcccccccc----CcCcEEEeecccCCCHHHHHH
Confidence 22222222221111 0111 246899999999999998543
No 90
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.84 E-value=3.3e-20 Score=183.64 Aligned_cols=165 Identities=22% Similarity=0.335 Sum_probs=128.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
||+++||+|+|||||+++|++..|.+... |... ...+++|..+.++.+++|+......+.+.++.++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~------------g~v~-~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~ 67 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRL------------GSVE-DGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKIN 67 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccC------------Ceec-CCcccCCCCHHHHhhcccccceeEEEEECCEEEE
Confidence 68999999999999999999888765432 1111 2346788899999999999999999999999999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHH
Q 010278 165 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 244 (514)
Q Consensus 165 liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~ 244 (514)
|||||||.+|...+.+++..+|++|+|+|+..+.. .++..++..+...++| +++++||+|+...+ ++
T Consensus 68 liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~-------~~~~~~~~~~~~~~~p-~iivvNK~D~~~~~-----~~ 134 (268)
T cd04170 68 LIDTPGYADFVGETRAALRAADAALVVVSAQSGVE-------VGTEKLWEFADEAGIP-RIIFINKMDRERAD-----FD 134 (268)
T ss_pred EEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECCccCCCC-----HH
Confidence 99999999999999999999999999999999853 5888999999999999 77899999995443 44
Q ss_pred HHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 245 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 245 ~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
+..++++..+. .. +-.+.+...+|.|+..+.
T Consensus 135 ~~~~~l~~~~~---~~----~~~~~ip~~~~~~~~~~v 165 (268)
T cd04170 135 KTLAALQEAFG---RP----VVPLQLPIGEGDDFKGVV 165 (268)
T ss_pred HHHHHHHHHhC---CC----eEEEEecccCCCceeEEE
Confidence 45555554432 11 112333456677665543
No 91
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.83 E-value=3e-20 Score=188.47 Aligned_cols=146 Identities=21% Similarity=0.247 Sum_probs=118.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
+.|||+|+||+|||||+|+|....-++... ..|+|.|..+...+|.++.|
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D------------------------------~pGvTRDr~y~~~~~~~~~f 53 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSD------------------------------TPGVTRDRIYGDAEWLGREF 53 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeec------------------------------CCCCccCCccceeEEcCceE
Confidence 789999999999999999996655444332 38999999999999999999
Q ss_pred EEEeCCCCcc-----h----HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCC
Q 010278 164 TILDAPGHKS-----Y----VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 234 (514)
Q Consensus 164 ~liDtPGh~~-----f----~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~ 234 (514)
.+|||+|... + ..++..++..||++|||||+..|.+ +++.+.+.+++..+.| +|+|+||+|-.
T Consensus 54 ~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git-------~~D~~ia~~Lr~~~kp-viLvvNK~D~~ 125 (444)
T COG1160 54 ILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGIT-------PADEEIAKILRRSKKP-VILVVNKIDNL 125 (444)
T ss_pred EEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCC-EEEEEEcccCc
Confidence 9999999763 2 3444556789999999999999965 6999999999988888 99999999972
Q ss_pred CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 235 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. +....-+.++|+. .++||||.+|.|+.+|.+
T Consensus 126 ~~-----------e~~~~efyslG~g-----~~~~ISA~Hg~Gi~dLld 158 (444)
T COG1160 126 KA-----------EELAYEFYSLGFG-----EPVPISAEHGRGIGDLLD 158 (444)
T ss_pred hh-----------hhhHHHHHhcCCC-----CceEeehhhccCHHHHHH
Confidence 11 1122235567775 689999999999999754
No 92
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=99.82 E-value=1.1e-19 Score=151.70 Aligned_cols=98 Identities=42% Similarity=0.711 Sum_probs=86.6
Q ss_pred CccceeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcceE
Q 010278 397 PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSI 476 (514)
Q Consensus 397 ~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~pi 476 (514)
|++++++|+|++.+|+. ..+|..||++++|+++.+++|++.+|.+.+| +|+.. |++|++||.|.|+|++++|+
T Consensus 1 ~~k~~~~f~A~v~vl~~--~~~i~~Gy~~~~~~~t~~~~~~i~~i~~~~~--~~~~~---p~~l~~g~~a~v~l~~~~pi 73 (99)
T PF03143_consen 1 PIKAVNRFEAQVIVLDH--PKPISPGYQPVLHIHTADVPCRIVKIISKID--TGKKK---PKFLKPGDRAVVELEFQKPI 73 (99)
T ss_dssp SSEEEEEEEEEEEESSG--SS-BETTEEEEEEETTEEEEEEEEEEEEEES--TTTEE----SEB-TTEEEEEEEEEEEEE
T ss_pred CCcccCEEEEEEEEEcC--CccccCCCccceEEeeceeeEEEEeeeeccc--ccccc---ccccccccccccceeeccce
Confidence 56789999999999543 4899999999999999999999999999998 55433 99999999999999999999
Q ss_pred EeeecccccccceEEEEeCCeEEEEEEEEec
Q 010278 477 CTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 507 (514)
Q Consensus 477 ~~e~~~~~~~lgrfilr~~g~tva~G~I~~v 507 (514)
|+|+|. ||+||++|+|+|+|+|++|
T Consensus 74 ~ve~~~------Rf~lR~~~~Tia~G~V~~v 98 (99)
T PF03143_consen 74 CVEPFS------RFILRDGGKTIAVGVVTKV 98 (99)
T ss_dssp EETTTT------EEEEEETTEEEEEEEEEEE
T ss_pred eeecCc------eEEEccCCeEEEEEEEEEe
Confidence 999986 9999999999999999986
No 93
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s
Probab=99.82 E-value=6.3e-20 Score=154.55 Aligned_cols=100 Identities=15% Similarity=0.256 Sum_probs=92.0
Q ss_pred ceeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcceEEee
Q 010278 400 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 479 (514)
Q Consensus 400 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~pi~~e 479 (514)
.+.+|+|+++|++ +.+|.+||.+++|+|+.+++|+|.+|.+++|+++++. .+|++|+.|+.|.|+|++++|+|+|
T Consensus 2 ~~~~f~a~i~~l~---~~pl~~G~~~~l~~~t~~~~~~i~~i~~~id~~t~~~--~~~~~l~~n~~a~v~i~~~~pi~~d 76 (103)
T cd04095 2 VSDQFAATLVWMD---EEPLRPGRKYLLKLGTRTVRATVTAIKYRVDVNTLEH--EAADTLELNDIGRVELSLSKPLAFD 76 (103)
T ss_pred ccceeeEEEEEec---CcccCCCCEEEEEEcCCEEEEEEeeeeEEEcCCCCCc--cCCCEECCCCeEEEEEEeCCccEec
Confidence 4678999999954 5589999999999999999999999999999999873 4789999999999999999999999
Q ss_pred ecccccccceEEEEe--CCeEEEEEEE
Q 010278 480 KFADFAQLGRFTLRT--EGKTVAVGKV 504 (514)
Q Consensus 480 ~~~~~~~lgrfilr~--~g~tva~G~I 504 (514)
+|.+++.+|||+|+| +|.|+|+|+|
T Consensus 77 ~~~~~~~~GrfiliD~~~~~tva~G~i 103 (103)
T cd04095 77 PYRENRATGSFILIDRLTNATVGAGMI 103 (103)
T ss_pred chhhCCCcceEEEEECCCCcEEEEEeC
Confidence 999999999999955 5999999986
No 94
>COG1159 Era GTPase [General function prediction only]
Probab=99.82 E-value=1e-19 Score=175.38 Aligned_cols=155 Identities=23% Similarity=0.234 Sum_probs=110.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.--|||+|.||+|||||+|+|++..-.+..+. ...|.+....-+..+
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k------------------------------~QTTR~~I~GI~t~~ 52 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPK------------------------------PQTTRNRIRGIVTTD 52 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCC------------------------------cchhhhheeEEEEcC
Confidence 34667899999999999999999987766655433 334444444446677
Q ss_pred CeEEEEEeCCCCcc--------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeec
Q 010278 160 TTRFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 231 (514)
Q Consensus 160 ~~~i~liDtPGh~~--------f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~ 231 (514)
+.++.|+||||... ..+....++..+|++++|||+.++. .+..+..+..++..+.| +|+++||+
T Consensus 53 ~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~-------~~~d~~il~~lk~~~~p-vil~iNKI 124 (298)
T COG1159 53 NAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGW-------GPGDEFILEQLKKTKTP-VILVVNKI 124 (298)
T ss_pred CceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccC-------CccHHHHHHHHhhcCCC-eEEEEEcc
Confidence 99999999999321 2444455577899999999999973 45777788888887788 88999999
Q ss_pred cCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 232 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 232 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|.... +.....+.+.+ -....| ..++|+||++|.|+..|.+
T Consensus 125 D~~~~---~~~l~~~~~~~---~~~~~f-----~~ivpiSA~~g~n~~~L~~ 165 (298)
T COG1159 125 DKVKP---KTVLLKLIAFL---KKLLPF-----KEIVPISALKGDNVDTLLE 165 (298)
T ss_pred ccCCc---HHHHHHHHHHH---HhhCCc-----ceEEEeeccccCCHHHHHH
Confidence 98432 11122222222 222333 3799999999999998643
No 95
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.81 E-value=2.1e-19 Score=189.89 Aligned_cols=157 Identities=23% Similarity=0.283 Sum_probs=123.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
...++|+++|++|+|||||+++|++....+ .....|.|.+.....+...+
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~------------------------------~~~~~gtt~~~~~~~~~~~~ 219 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVI------------------------------VSDIAGTTRDSIDIPFERNG 219 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeee------------------------------cCCCCCceECcEeEEEEECC
Confidence 456899999999999999999996533221 12237888888778888888
Q ss_pred eEEEEEeCCCCcchH-----------HHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe
Q 010278 161 TRFTILDAPGHKSYV-----------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 229 (514)
Q Consensus 161 ~~i~liDtPGh~~f~-----------~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviN 229 (514)
..+.|+||||+.++. ..+...+..+|++|+|+|+.+|.. .|+.+.+..+...++| +|+|+|
T Consensus 220 ~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~-------~~~~~~~~~~~~~~~~-iiiv~N 291 (429)
T TIGR03594 220 KKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGIT-------EQDLRIAGLILEAGKA-LVIVVN 291 (429)
T ss_pred cEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCc-EEEEEE
Confidence 999999999976542 223456789999999999999854 5888888888888998 999999
Q ss_pred eccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 230 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 230 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|||+. + +...++++.+.+...+...+ .++++++||++|.|+.++++
T Consensus 292 K~Dl~--~-~~~~~~~~~~~~~~~~~~~~-----~~~vi~~SA~~g~~v~~l~~ 337 (429)
T TIGR03594 292 KWDLV--K-DEKTREEFKKELRRKLPFLD-----FAPIVFISALTGQGVDKLLD 337 (429)
T ss_pred CcccC--C-CHHHHHHHHHHHHHhcccCC-----CCceEEEeCCCCCCHHHHHH
Confidence 99994 2 34566677777776665544 36899999999999998765
No 96
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=3.8e-19 Score=188.27 Aligned_cols=157 Identities=25% Similarity=0.330 Sum_probs=123.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
...++|+++|++|+|||||+++|++....+ .....|.|.+.....+.+.+
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~------------------------------~~~~~gtt~~~~~~~~~~~~ 220 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVI------------------------------VSDIAGTTRDSIDTPFERDG 220 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCceEEEEEEEEEECC
Confidence 357999999999999999999996543221 12237899988888888899
Q ss_pred eEEEEEeCCCCcch-----------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe
Q 010278 161 TRFTILDAPGHKSY-----------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 229 (514)
Q Consensus 161 ~~i~liDtPGh~~f-----------~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviN 229 (514)
..+.|+||||+.+. ...+++.+..+|++|+|+|+..|.. .|+.+.+.++...+.| +|+++|
T Consensus 221 ~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~-------~~~~~i~~~~~~~~~~-~ivv~N 292 (435)
T PRK00093 221 QKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGIT-------EQDLRIAGLALEAGRA-LVIVVN 292 (435)
T ss_pred eeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCc-EEEEEE
Confidence 99999999997542 2334567889999999999999854 5888888888888998 999999
Q ss_pred eccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccccc
Q 010278 230 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDK 284 (514)
Q Consensus 230 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~ 284 (514)
|||+ . ++...+++.+++...+.... .+|++++||++|.|+.++++.
T Consensus 293 K~Dl--~--~~~~~~~~~~~~~~~l~~~~-----~~~i~~~SA~~~~gv~~l~~~ 338 (435)
T PRK00093 293 KWDL--V--DEKTMEEFKKELRRRLPFLD-----YAPIVFISALTGQGVDKLLEA 338 (435)
T ss_pred CccC--C--CHHHHHHHHHHHHHhccccc-----CCCEEEEeCCCCCCHHHHHHH
Confidence 9998 3 23445666666666665443 469999999999999987653
No 97
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.79 E-value=2.3e-18 Score=157.63 Aligned_cols=155 Identities=23% Similarity=0.277 Sum_probs=109.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeE
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 162 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~ 162 (514)
+++|+++|++++|||||+++|+...... ....++.|.+.....+...+..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 51 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVI------------------------------VSDIAGTTRDSIDVPFEYDGKK 51 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccee------------------------------ccCCCCCccCceeeEEEECCee
Confidence 5789999999999999999995432211 1112455666555667778888
Q ss_pred EEEEeCCCCcch----------H-HHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeec
Q 010278 163 FTILDAPGHKSY----------V-PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 231 (514)
Q Consensus 163 i~liDtPGh~~f----------~-~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~ 231 (514)
+++|||||+.+. . ......+..+|++|+|+|+..+.. .+....+..+...+.| +++++||+
T Consensus 52 ~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~~~~~~~~-~iiv~nK~ 123 (174)
T cd01895 52 YTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGIT-------EQDLRIAGLILEEGKA-LVIVVNKW 123 (174)
T ss_pred EEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcc-------hhHHHHHHHHHhcCCC-EEEEEecc
Confidence 999999997443 1 233445678999999999998743 3455566666667888 89999999
Q ss_pred cCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 232 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 232 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
|+. +......+.+.+.+...+...+ ..+++++||++|.|+.++.
T Consensus 124 Dl~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~~ 167 (174)
T cd01895 124 DLV--EKDSKTMKEFKKEIRRKLPFLD-----YAPIVFISALTGQGVDKLF 167 (174)
T ss_pred ccC--CccHHHHHHHHHHHHhhccccc-----CCceEEEeccCCCCHHHHH
Confidence 993 3222345555555555444322 3689999999999998853
No 98
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.78 E-value=1.2e-18 Score=159.42 Aligned_cols=156 Identities=23% Similarity=0.253 Sum_probs=103.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
+|+++|++|+|||||+++|....+.. .+. .......|+......+.+++..+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~--------------~~~-------------~~~~~~~t~~~~~~~~~~~~~~~~ 53 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY--------------KGL-------------PPSKITPTVGLNIGTIEVGNARLK 53 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc--------------cCC-------------cccccCCccccceEEEEECCEEEE
Confidence 58999999999999999995432210 000 001123344444455667789999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH----HcCCCeEEEEEeeccCCCCCchH
Q 010278 165 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 165 liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~----~~~vp~~IvviNK~D~~~~~~~~ 240 (514)
|+|||||..|...+...+..+|++|+|+|+..... + .+....+..+. ..++| +++++||+|+...
T Consensus 54 l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~~---- 122 (167)
T cd04160 54 FWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRER---F---EESKSALEKVLRNEALEGVP-LLILANKQDLPDA---- 122 (167)
T ss_pred EEECCCChhhHHHHHHHhCCCCEEEEEEECchHHH---H---HHHHHHHHHHHhChhhcCCC-EEEEEEccccccC----
Confidence 99999999998888888899999999999976421 0 12222222222 24788 9999999998432
Q ss_pred HHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 241 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 241 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
...+++...+.......+. ..++++++||++|.|+.++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 123 LSVEEIKEVFQDKAEEIGR---RDCLVLPVSALEGTGVREG 160 (167)
T ss_pred CCHHHHHHHhccccccccC---CceEEEEeeCCCCcCHHHH
Confidence 1223333333333333332 2578999999999999885
No 99
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=99.77 E-value=2.9e-18 Score=144.18 Aligned_cols=101 Identities=32% Similarity=0.537 Sum_probs=92.1
Q ss_pred ceeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcceEEee
Q 010278 400 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 479 (514)
Q Consensus 400 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~pi~~e 479 (514)
++++|+|++.+++. ..+|.+||++.+|+++.++.|+|..|.+++|.++ ..++++++|++|+.+.|+|++++|+|++
T Consensus 2 ~~~~f~a~i~~l~~--~~pl~~g~~~~l~~~t~~~~~~i~~i~~~~d~~~--~~~~~~~~l~~~~~a~v~l~~~~pi~~e 77 (102)
T cd01513 2 AVDKFVAEIYVLDH--PEPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKT--EEKKPPEFLKSGERGIVEVELQKPVALE 77 (102)
T ss_pred cccEEEEEEEEECC--CcccCCCCcEEEEeecCEEeEEEEeeeeecccCc--ccccCchhhcCCCEEEEEEEECCceEEE
Confidence 46889999988542 3689999999999999999999999999999874 3456789999999999999999999999
Q ss_pred ecccccccceEEEEeCCeEEEEEEE
Q 010278 480 KFADFAQLGRFTLRTEGKTVAVGKV 504 (514)
Q Consensus 480 ~~~~~~~lgrfilr~~g~tva~G~I 504 (514)
+|.+++.+|||+||+.|+|+|+|+|
T Consensus 78 ~~~~~~~~grfilr~~~~tvg~G~V 102 (102)
T cd01513 78 TFSENQEGGRFALRDGGRTVGAGLI 102 (102)
T ss_pred EhhhCCCcccEEEEeCCCEEEEEEC
Confidence 9999999999999999999999986
No 100
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.77 E-value=5.9e-18 Score=167.67 Aligned_cols=148 Identities=18% Similarity=0.204 Sum_probs=98.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
.|+++|++|+|||||+|+|++....+. ....+.|.+.....+...+.++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~v------------------------------s~~~~TTr~~i~~i~~~~~~qii 51 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISIT------------------------------SPKAQTTRNRISGIHTTGASQII 51 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeec------------------------------CCCCCcccCcEEEEEEcCCcEEE
Confidence 589999999999999999964322111 11134444433333445667899
Q ss_pred EEeCCCCcch--------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCC
Q 010278 165 ILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 165 liDtPGh~~f--------~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~ 236 (514)
|+||||+.+. .+.+...+..+|++++|+|++.+.. .....+..+...+.| +++|+||+|+ .
T Consensus 52 ~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~--------~~~~i~~~l~~~~~p-~ilV~NK~Dl--~ 120 (270)
T TIGR00436 52 FIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNG--------DGEFVLTKLQNLKRP-VVLTRNKLDN--K 120 (270)
T ss_pred EEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCc--------hHHHHHHHHHhcCCC-EEEEEECeeC--C
Confidence 9999996432 2334456789999999999987632 224556667778888 8999999998 3
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+ ... +...+..+....++ .+++|+||++|.|++++.+
T Consensus 121 ~--~~~---~~~~~~~~~~~~~~-----~~v~~iSA~~g~gi~~L~~ 157 (270)
T TIGR00436 121 F--KDK---LLPLIDKYAILEDF-----KDIVPISALTGDNTSFLAA 157 (270)
T ss_pred C--HHH---HHHHHHHHHhhcCC-----CceEEEecCCCCCHHHHHH
Confidence 2 111 22233333333332 2799999999999998644
No 101
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.77 E-value=6.2e-18 Score=157.14 Aligned_cols=153 Identities=18% Similarity=0.222 Sum_probs=107.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
...+.++|+++|++|+|||||+++|...... . ......|.|.+...+..
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~-~----------------------------~~~~~~~~t~~~~~~~~-- 62 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKL-A----------------------------RTSKTPGRTQLINFFEV-- 62 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCc-c----------------------------cccCCCCcceEEEEEEe--
Confidence 3467789999999999999999999543210 0 01112456665544333
Q ss_pred CCeEEEEEeCCCCc----------chHH---HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEE
Q 010278 159 ETTRFTILDAPGHK----------SYVP---NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL 225 (514)
Q Consensus 159 ~~~~i~liDtPGh~----------~f~~---~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~I 225 (514)
+ ..+.|+||||+. +|.. ..++....+|++|+|+|++.+.. .++.+.+.++...+.| ++
T Consensus 63 ~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~-------~~~~~~~~~~~~~~~p-vi 133 (179)
T TIGR03598 63 N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLK-------ELDLEMLEWLRERGIP-VL 133 (179)
T ss_pred C-CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCC-------HHHHHHHHHHHHcCCC-EE
Confidence 2 379999999962 2322 23333346799999999998743 4677777888888998 99
Q ss_pred EEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccc
Q 010278 226 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMK 279 (514)
Q Consensus 226 vviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~ 279 (514)
+++||+|+ .+ ....+...++++..++..+. ..+++++||++|+|++
T Consensus 134 iv~nK~D~--~~--~~~~~~~~~~i~~~l~~~~~----~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 134 IVLTKADK--LK--KSELNKQLKKIKKALKKDAD----DPSVQLFSSLKKTGID 179 (179)
T ss_pred EEEECccc--CC--HHHHHHHHHHHHHHHhhccC----CCceEEEECCCCCCCC
Confidence 99999998 32 34455667777777776543 3589999999999984
No 102
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.77 E-value=3.7e-18 Score=153.94 Aligned_cols=143 Identities=22% Similarity=0.246 Sum_probs=103.3
Q ss_pred EEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEEEE
Q 010278 87 VFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTIL 166 (514)
Q Consensus 87 ~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~li 166 (514)
+++|++|+|||||+++|+...... .+...++|.+.....+...++.+.|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~~~~~i~ 50 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAI------------------------------VEDTPGVTRDRIYGEAEWGGREFILI 50 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEe------------------------------ecCCCCceeCceeEEEEECCeEEEEE
Confidence 589999999999999995321100 11235667766667777888999999
Q ss_pred eCCCCcchHH--------HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 167 DAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 167 DtPGh~~f~~--------~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
||||+.++.. .....+..+|++++|+|+.++.. ....+++..++..+.| +++++||+|+...
T Consensus 51 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~-------~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~-- 120 (157)
T cd01894 51 DTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLT-------PADEEIAKYLRKSKKP-VILVVNKVDNIKE-- 120 (157)
T ss_pred ECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCC-------ccHHHHHHHHHhcCCC-EEEEEECcccCCh--
Confidence 9999988543 44456788999999999988643 3556677778888888 9999999999322
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... ...+..+++ .+++++|+++|.|+.++++
T Consensus 121 ~~~---------~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~~ 151 (157)
T cd01894 121 EDE---------AAEFYSLGF-----GEPIPISAEHGRGIGDLLD 151 (157)
T ss_pred HHH---------HHHHHhcCC-----CCeEEEecccCCCHHHHHH
Confidence 111 112333333 2689999999999988543
No 103
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.75 E-value=1.1e-17 Score=176.91 Aligned_cols=145 Identities=21% Similarity=0.265 Sum_probs=111.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
.|+++|++|+|||||+|+|+.....+ .....|+|.+.....+.+.+..+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~------------------------------v~~~~g~t~d~~~~~~~~~~~~~~ 50 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAI------------------------------VSDTPGVTRDRKYGDAEWGGREFI 50 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcce------------------------------ecCCCCcccCceEEEEEECCeEEE
Confidence 48999999999999999995432211 122368888888888889999999
Q ss_pred EEeCCCC--------cchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCC
Q 010278 165 ILDAPGH--------KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 165 liDtPGh--------~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~ 236 (514)
|+||||+ +.+...+..++..+|++|+|+|+..|.. ....+.+..++..+.| +++|+||+|+...
T Consensus 51 liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~-------~~d~~i~~~l~~~~~p-iilVvNK~D~~~~ 122 (429)
T TIGR03594 51 LIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLT-------PEDEEIAKWLRKSGKP-VILVANKIDGKKE 122 (429)
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHhCCC-EEEEEECccCCcc
Confidence 9999997 4455666777889999999999998843 5677788888888998 9999999998432
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+. . .. .+..+|+. +++++||.+|.|+.++++
T Consensus 123 ~~---~----~~----~~~~lg~~-----~~~~vSa~~g~gv~~ll~ 153 (429)
T TIGR03594 123 DA---V----AA----EFYSLGFG-----EPIPISAEHGRGIGDLLD 153 (429)
T ss_pred cc---c----HH----HHHhcCCC-----CeEEEeCCcCCChHHHHH
Confidence 21 0 11 13345543 689999999999998644
No 104
>PRK15494 era GTPase Era; Provisional
Probab=99.75 E-value=1.8e-17 Score=169.04 Aligned_cols=152 Identities=23% Similarity=0.311 Sum_probs=103.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+..+|+++|++|+|||||+++|+.....+ .....+.|.+.....+..++
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~i------------------------------vs~k~~tTr~~~~~~~~~~~ 99 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSI------------------------------VTPKVQTTRSIITGIITLKD 99 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceee------------------------------ccCCCCCccCcEEEEEEeCC
Confidence 466899999999999999999995432111 01124455554445567788
Q ss_pred eEEEEEeCCCCcc--------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010278 161 TRFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 232 (514)
Q Consensus 161 ~~i~liDtPGh~~--------f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D 232 (514)
.++.|+||||..+ +.+.....+..+|++|+|||+..+. .......+..++..+.| .|+|+||+|
T Consensus 100 ~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~-------~~~~~~il~~l~~~~~p-~IlViNKiD 171 (339)
T PRK15494 100 TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSF-------DDITHNILDKLRSLNIV-PIFLLNKID 171 (339)
T ss_pred eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCC-------CHHHHHHHHHHHhcCCC-EEEEEEhhc
Confidence 9999999999743 2222334467999999999998763 23445566777777888 678999999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+. + + ...+ +...+...+ ...+++|+||++|.|++++++
T Consensus 172 l~--~--~-~~~~----~~~~l~~~~----~~~~i~~iSAktg~gv~eL~~ 209 (339)
T PRK15494 172 IE--S--K-YLND----IKAFLTENH----PDSLLFPISALSGKNIDGLLE 209 (339)
T ss_pred Cc--c--c-cHHH----HHHHHHhcC----CCcEEEEEeccCccCHHHHHH
Confidence 83 2 1 1222 333333322 125799999999999998644
No 105
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=1.4e-17 Score=177.49 Aligned_cols=155 Identities=20% Similarity=0.236 Sum_probs=112.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
..++|+++|++|+|||||+++|+.....+ .....|.|.+.....+.+++.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~------------------------------~s~~~gtT~d~~~~~~~~~~~ 259 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSV------------------------------VDDVAGTTVDPVDSLIELGGK 259 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccc------------------------------ccCCCCccCCcceEEEEECCE
Confidence 46899999999999999999996432111 122367888777777888899
Q ss_pred EEEEEeCCCCcc---------hHHHH--HHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEee
Q 010278 162 RFTILDAPGHKS---------YVPNM--ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 230 (514)
Q Consensus 162 ~i~liDtPGh~~---------f~~~~--~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK 230 (514)
.+.|+||||.++ |...+ ...+..+|++|+|+|++++.. .|..+.+..+...++| +|+|+||
T Consensus 260 ~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s-------~~~~~~~~~~~~~~~p-iIiV~NK 331 (472)
T PRK03003 260 TWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPIS-------EQDQRVLSMVIEAGRA-LVLAFNK 331 (472)
T ss_pred EEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEEC
Confidence 999999999632 22211 234678999999999998854 4667777777778998 9999999
Q ss_pred ccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 231 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 231 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
||+.. ......+..++...+.... ..|++++||++|.|+.++++
T Consensus 332 ~Dl~~----~~~~~~~~~~i~~~l~~~~-----~~~~~~~SAk~g~gv~~lf~ 375 (472)
T PRK03003 332 WDLVD----EDRRYYLEREIDRELAQVP-----WAPRVNISAKTGRAVDKLVP 375 (472)
T ss_pred cccCC----hhHHHHHHHHHHHhcccCC-----CCCEEEEECCCCCCHHHHHH
Confidence 99942 1222333444444444333 35899999999999998765
No 106
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.74 E-value=1.1e-17 Score=151.27 Aligned_cols=141 Identities=20% Similarity=0.234 Sum_probs=97.3
Q ss_pred EEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEEEEe
Q 010278 88 FIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILD 167 (514)
Q Consensus 88 ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~liD 167 (514)
++|++|+|||||+++|..... ......|+|++.....+++++..+.|+|
T Consensus 1 l~G~~~~GKssl~~~~~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~liD 49 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ-------------------------------KVGNWPGVTVEKKEGRFKLGGKEIEIVD 49 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc-------------------------------cccCCCCcccccceEEEeeCCeEEEEEE
Confidence 589999999999999943210 0112367788777777888889999999
Q ss_pred CCCCcchHHH------HHHhh--hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010278 168 APGHKSYVPN------MISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 168 tPGh~~f~~~------~~~g~--~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~ 239 (514)
|||+.+|... +...+ ..+|++|+|+|+... .+....+..+...++| +|+++||+|+......
T Consensus 50 tpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~---------~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~~ 119 (158)
T cd01879 50 LPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNL---------ERNLYLTLQLLELGLP-VVVALNMIDEAEKRGI 119 (158)
T ss_pred CCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcc---------hhHHHHHHHHHHcCCC-EEEEEehhhhcccccc
Confidence 9999876532 22223 489999999999864 2334445556667888 8999999999432211
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
......+.+.++ .+++++||.+|.|+.+++
T Consensus 120 -------~~~~~~~~~~~~------~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 120 -------KIDLDKLSELLG------VPVVPTSARKGEGIDELK 149 (158)
T ss_pred -------hhhHHHHHHhhC------CCeEEEEccCCCCHHHHH
Confidence 111222222322 579999999999998854
No 107
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=4.5e-17 Score=173.65 Aligned_cols=149 Identities=24% Similarity=0.275 Sum_probs=108.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
...++|+|+|++|+|||||+++|+.....+ .....|+|.+.....+.+.+
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~------------------------------v~~~~gvT~d~~~~~~~~~~ 85 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAV------------------------------VEDVPGVTRDRVSYDAEWNG 85 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCccc------------------------------ccCCCCCCEeeEEEEEEECC
Confidence 345789999999999999999995432111 12247888888888888899
Q ss_pred eEEEEEeCCCCcc--------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010278 161 TRFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 232 (514)
Q Consensus 161 ~~i~liDtPGh~~--------f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D 232 (514)
..+.|+||||++. |...+...+..||++|+|+|+..+.. ....+.+..++..++| +|+|+||+|
T Consensus 86 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s-------~~~~~i~~~l~~~~~p-iilV~NK~D 157 (472)
T PRK03003 86 RRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGAT-------ATDEAVARVLRRSGKP-VILAANKVD 157 (472)
T ss_pred cEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECcc
Confidence 9999999999763 34445556789999999999998843 2456667777778888 999999999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+.... . + .. .+..+|+. ..+++||++|.|+.++++
T Consensus 158 l~~~~--~----~----~~-~~~~~g~~-----~~~~iSA~~g~gi~eL~~ 192 (472)
T PRK03003 158 DERGE--A----D----AA-ALWSLGLG-----EPHPVSALHGRGVGDLLD 192 (472)
T ss_pred CCccc--h----h----hH-HHHhcCCC-----CeEEEEcCCCCCcHHHHH
Confidence 84221 1 0 11 12234443 246999999999998644
No 108
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.73 E-value=2.5e-17 Score=135.25 Aligned_cols=87 Identities=26% Similarity=0.495 Sum_probs=82.8
Q ss_pred CCCceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCccccee
Q 010278 310 NGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILS 387 (514)
Q Consensus 310 ~~p~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~ 387 (514)
++||||+|+++| ++.|++++|+|++|+|+.||+++++|++..++|++|++++.++++|.||++|+|+|++++..++++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~~v~~ 81 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDIKR 81 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEECCcCcCEECCCCEEEEEECCCCHHHcCC
Confidence 579999999999 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEccCCC
Q 010278 388 GFVLSSVAK 396 (514)
Q Consensus 388 G~vl~~~~~ 396 (514)
||+||++++
T Consensus 82 G~vl~~~~~ 90 (91)
T cd03693 82 GDVAGDSKN 90 (91)
T ss_pred cCEEccCCC
Confidence 999999764
No 109
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.72 E-value=5.7e-17 Score=180.19 Aligned_cols=148 Identities=21% Similarity=0.277 Sum_probs=105.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
+.++|+++||+|+|||||+|+|.+... ...+..|+|++.....+.++++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~-------------------------------~vgn~pGvTve~k~g~~~~~~~ 50 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQ-------------------------------RVGNWAGVTVERKEGQFSTTDH 50 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC-------------------------------ccCCCCCceEeeEEEEEEcCce
Confidence 347899999999999999999932111 0223489999988888999999
Q ss_pred EEEEEeCCCCcchHH--------HHHHh----hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe
Q 010278 162 RFTILDAPGHKSYVP--------NMISG----ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 229 (514)
Q Consensus 162 ~i~liDtPGh~~f~~--------~~~~g----~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviN 229 (514)
.++++||||+.+|.. +.+.. ...+|++|+|+|++... +.......+..+|+| +|+++|
T Consensus 51 ~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le---------r~l~l~~ql~e~giP-vIvVlN 120 (772)
T PRK09554 51 QVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE---------RNLYLTLQLLELGIP-CIVALN 120 (772)
T ss_pred EEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcch---------hhHHHHHHHHHcCCC-EEEEEE
Confidence 999999999987742 11111 23789999999998752 334455667778999 899999
Q ss_pred eccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 230 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 230 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|+|+.... .+.. .+..+-+.+| +|++|+||.+|+|++++.+
T Consensus 121 K~Dl~~~~----~i~i---d~~~L~~~LG------~pVvpiSA~~g~GIdeL~~ 161 (772)
T PRK09554 121 MLDIAEKQ----NIRI---DIDALSARLG------CPVIPLVSTRGRGIEALKL 161 (772)
T ss_pred chhhhhcc----CcHH---HHHHHHHHhC------CCEEEEEeecCCCHHHHHH
Confidence 99984221 1111 2222223333 5899999999999998543
No 110
>PRK00089 era GTPase Era; Reviewed
Probab=99.71 E-value=1.6e-16 Score=159.35 Aligned_cols=154 Identities=20% Similarity=0.211 Sum_probs=101.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+...|+++|++|+|||||+|+|++....+.. ...+.|.+.....+..++
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs------------------------------~~~~tt~~~i~~i~~~~~ 52 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVS------------------------------PKPQTTRHRIRGIVTEDD 52 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecC------------------------------CCCCcccccEEEEEEcCC
Confidence 35678999999999999999999643221110 012223322222233456
Q ss_pred eEEEEEeCCCCcch--------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010278 161 TRFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 232 (514)
Q Consensus 161 ~~i~liDtPGh~~f--------~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D 232 (514)
.++.|+||||+.+. .......+..+|++++|+|+..+. .....+.+..+...+.| +++++||+|
T Consensus 53 ~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~-------~~~~~~i~~~l~~~~~p-vilVlNKiD 124 (292)
T PRK00089 53 AQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKI-------GPGDEFILEKLKKVKTP-VILVLNKID 124 (292)
T ss_pred ceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCC-------ChhHHHHHHHHhhcCCC-EEEEEECCc
Confidence 89999999996442 334455678899999999999852 23556667777767888 899999999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+. . +........+.+. +..+ ..+++|+||++|.|+.++++
T Consensus 125 l~--~-~~~~l~~~~~~l~---~~~~-----~~~i~~iSA~~~~gv~~L~~ 164 (292)
T PRK00089 125 LV--K-DKEELLPLLEELS---ELMD-----FAEIVPISALKGDNVDELLD 164 (292)
T ss_pred CC--C-CHHHHHHHHHHHH---hhCC-----CCeEEEecCCCCCCHHHHHH
Confidence 93 1 1222333333332 2222 24799999999999998643
No 111
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.71 E-value=6.8e-17 Score=148.10 Aligned_cols=148 Identities=18% Similarity=0.153 Sum_probs=92.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe-EE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT-RF 163 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~-~i 163 (514)
+|+++|++|+|||||+++|...... .....+.|+......+...+. .+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~-------------------------------v~~~~~~t~~~~~~~~~~~~~~~~ 50 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK-------------------------------IADYPFTTLVPNLGVVRVDDGRSF 50 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc-------------------------------ccCCCccccCCcceEEEcCCCCeE
Confidence 6999999999999999999432110 001123344433344555665 89
Q ss_pred EEEeCCCCc-------chHHHHHHhhhhcCEEEEEEECCCC-cccccccCCcchHHHHHHHHH-----cCCCeEEEEEee
Q 010278 164 TILDAPGHK-------SYVPNMISGASQADIGVLVISARKG-EFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNK 230 (514)
Q Consensus 164 ~liDtPGh~-------~f~~~~~~g~~~~D~ailVVda~~g-~~e~~~~~~~qt~e~l~~~~~-----~~vp~~IvviNK 230 (514)
.|+||||+. .+...+.+.+..+|++|+|+|+..+ ... .+....+..+.. .+.| +++|+||
T Consensus 51 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~------~~~~~~~~~l~~~~~~~~~~p-~ivv~NK 123 (170)
T cd01898 51 VVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPV------EDYKTIRNELELYNPELLEKP-RIVVLNK 123 (170)
T ss_pred EEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHH------HHHHHHHHHHHHhCccccccc-cEEEEEc
Confidence 999999963 2345555667789999999999875 110 122222223332 2567 8899999
Q ss_pred ccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 231 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 231 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
+|+.... ... ..+..++... ...+++++||++|.|+.+++
T Consensus 124 ~Dl~~~~----~~~---~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~ 163 (170)
T cd01898 124 IDLLDEE----ELF---ELLKELLKEL-----WGKPVFPISALTGEGLDELL 163 (170)
T ss_pred hhcCCch----hhH---HHHHHHHhhC-----CCCCEEEEecCCCCCHHHHH
Confidence 9983321 111 1222223221 13579999999999999854
No 112
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.70 E-value=1.2e-16 Score=128.62 Aligned_cols=82 Identities=71% Similarity=1.149 Sum_probs=79.1
Q ss_pred CceEEEEEEEccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEE
Q 010278 312 PFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVL 391 (514)
Q Consensus 312 p~~~~i~~~~~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl 391 (514)
||+|+|+++|+..|++++|+|.+|+|++||++.++|++..++|++|++++.++++|.|||+|+++|++++..++++||+|
T Consensus 1 plr~~I~~v~~~~g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v~~G~vl 80 (82)
T cd04089 1 PLRLPIIDKYKDMGTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDISPGFVL 80 (82)
T ss_pred CeEEEEEeEEEcCCEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEECCEECCEECCCCEEEEEecCCCHHHCCCCCEE
Confidence 79999999998779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 010278 392 SS 393 (514)
Q Consensus 392 ~~ 393 (514)
++
T Consensus 81 ~~ 82 (82)
T cd04089 81 CS 82 (82)
T ss_pred eC
Confidence 74
No 113
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.70 E-value=1.2e-16 Score=178.13 Aligned_cols=155 Identities=18% Similarity=0.209 Sum_probs=112.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
..++|+++|++|+|||||+++|+.....+ .....|.|.+.....+.+++.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~------------------------------v~~~~gtT~d~~~~~~~~~~~ 498 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAV------------------------------VNDLAGTTRDPVDEIVEIDGE 498 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccc------------------------------cCCCCCCCcCcceeEEEECCC
Confidence 45899999999999999999996432211 112367787777777888899
Q ss_pred EEEEEeCCCCcc---------hHHH--HHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEee
Q 010278 162 RFTILDAPGHKS---------YVPN--MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 230 (514)
Q Consensus 162 ~i~liDtPGh~~---------f~~~--~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK 230 (514)
.+.|+||||+.+ |... ....+..+|++|+|+|++.+.. .|....+..+...++| +|+|+||
T Consensus 499 ~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s-------~~~~~i~~~~~~~~~p-iIiV~NK 570 (712)
T PRK09518 499 DWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPIS-------EQDLKVMSMAVDAGRA-LVLVFNK 570 (712)
T ss_pred EEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEEc
Confidence 999999999642 2222 2344678999999999999853 4777777777778999 9999999
Q ss_pred ccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 231 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 231 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
||+.. ....+.+...+...+.... ..+++++||++|.|+.++++
T Consensus 571 ~DL~~----~~~~~~~~~~~~~~l~~~~-----~~~ii~iSAktg~gv~~L~~ 614 (712)
T PRK09518 571 WDLMD----EFRRQRLERLWKTEFDRVT-----WARRVNLSAKTGWHTNRLAP 614 (712)
T ss_pred hhcCC----hhHHHHHHHHHHHhccCCC-----CCCEEEEECCCCCCHHHHHH
Confidence 99932 1223334444443333322 35889999999999998765
No 114
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.70 E-value=9.3e-17 Score=146.81 Aligned_cols=151 Identities=17% Similarity=0.232 Sum_probs=97.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC--
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 160 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~-- 160 (514)
.++|+++|++|+|||||+++|+. +.... +....++.+.....+..++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 51 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKS--GTFSE-----------------------------RQGNTIGVDFTMKTLEIEGKR 51 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhh--CCCcc-----------------------------cCCCccceEEEEEEEEECCEE
Confidence 47899999999999999999843 22110 0001122233333444555
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~~~~ 237 (514)
..+.|+||||+++|.......++.+|++|+|+|++.... ++ .....+..+.. .++| +|+|+||+|+....
T Consensus 52 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~ 124 (165)
T cd01864 52 VKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSS---FE---SVPHWIEEVEKYGASNVV-LLLIGNKCDLEEQR 124 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHH---HH---hHHHHHHHHHHhCCCCCc-EEEEEECccccccc
Confidence 578999999999998877777889999999999987532 11 22233333333 3677 89999999984221
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
+. ..++...+.+..+. ..++++||++|.|+.+++
T Consensus 125 --~~----~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~~ 158 (165)
T cd01864 125 --EV----LFEEACTLAEKNGM-----LAVLETSAKESQNVEEAF 158 (165)
T ss_pred --cc----CHHHHHHHHHHcCC-----cEEEEEECCCCCCHHHHH
Confidence 11 11222233333332 468999999999999853
No 115
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=2.5e-16 Score=166.80 Aligned_cols=146 Identities=21% Similarity=0.232 Sum_probs=106.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
++|+++|++|+|||||+++|+.....+ .....|+|.+.....+.+.+..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~------------------------------v~~~~~~t~d~~~~~~~~~~~~~ 51 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAI------------------------------VADTPGVTRDRIYGEAEWLGREF 51 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee------------------------------eCCCCCCcccceEEEEEECCcEE
Confidence 579999999999999999995332111 11236788887777788889999
Q ss_pred EEEeCCCCcc----h----HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCC
Q 010278 164 TILDAPGHKS----Y----VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 164 ~liDtPGh~~----f----~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~ 235 (514)
.||||||+.+ + .......+..+|++|+|+|+..+.. ....+.+.+++..+.| +|+|+||+|...
T Consensus 52 ~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~-------~~~~~~~~~l~~~~~p-iilv~NK~D~~~ 123 (435)
T PRK00093 52 ILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLT-------PADEEIAKILRKSNKP-VILVVNKVDGPD 123 (435)
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCc-EEEEEECccCcc
Confidence 9999999987 3 3334556789999999999998743 3556677778888998 999999999732
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. ... +.. +..+|+. .++++||.+|.|+.++++
T Consensus 124 ~---~~~-------~~~-~~~lg~~-----~~~~iSa~~g~gv~~l~~ 155 (435)
T PRK00093 124 E---EAD-------AYE-FYSLGLG-----EPYPISAEHGRGIGDLLD 155 (435)
T ss_pred c---hhh-------HHH-HHhcCCC-----CCEEEEeeCCCCHHHHHH
Confidence 1 111 111 1234442 478999999999988643
No 116
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.69 E-value=2.4e-16 Score=144.30 Aligned_cols=150 Identities=18% Similarity=0.183 Sum_probs=92.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
++|+++|++|+|||||+++|...... .....+.|.......+.+++..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~ 49 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-------------------------------VAPYPFTTKSLFVGHFDYKYLRW 49 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-------------------------------cCCCCCcccceeEEEEccCceEE
Confidence 57999999999999999999532110 11123445555545556677899
Q ss_pred EEEeCCCCcc-------hH-HHHHHh-hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeecc
Q 010278 164 TILDAPGHKS-------YV-PNMISG-ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMD 232 (514)
Q Consensus 164 ~liDtPGh~~-------f~-~~~~~g-~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~vp~~IvviNK~D 232 (514)
+|+||||+.+ ++ ...+.. ...+|++|+|+|+..... +.. ....+.+..++.. +.| +|+++||+|
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~---~~~-~~~~~~~~~l~~~~~~~p-vilv~NK~D 124 (168)
T cd01897 50 QVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCG---YSL-EEQLSLFEEIKPLFKNKP-VIVVLNKID 124 (168)
T ss_pred EEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccc---cch-HHHHHHHHHHHhhcCcCC-eEEEEEccc
Confidence 9999999842 11 112222 234799999999986421 000 1122334444444 677 999999999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+... ....+ ...+.+. ...+++++||++|.|+.++++
T Consensus 125 l~~~----~~~~~----~~~~~~~------~~~~~~~~Sa~~~~gi~~l~~ 161 (168)
T cd01897 125 LLTF----EDLSE----IEEEEEL------EGEEVLKISTLTEEGVDEVKN 161 (168)
T ss_pred cCch----hhHHH----HHHhhhh------ccCceEEEEecccCCHHHHHH
Confidence 8321 11221 2222221 146899999999999998643
No 117
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.69 E-value=2.7e-16 Score=143.37 Aligned_cols=149 Identities=17% Similarity=0.203 Sum_probs=96.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
++|+++|++++|||||+++|+.. ..... .....+.++......+......+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMD--GYEPQ---------------------------QLSTYALTLYKHNAKFEGKTILV 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC--CCCCC---------------------------cCCceeeEEEEEEEEECCEEEEE
Confidence 47999999999999999998532 11000 00011222222222233334678
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCCCchHH
Q 010278 164 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKE 241 (514)
Q Consensus 164 ~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~vp~~IvviNK~D~~~~~~~~~ 241 (514)
.|+||||++.|.......+..+|++|+|+|++.+.. + ....+.+..++.. ++| ++++.||+|+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~p-~ivv~nK~Dl~~~----- 119 (161)
T cd04124 52 DFWDTAGQERFQTMHASYYHKAHACILVFDVTRKIT---Y---KNLSKWYEELREYRPEIP-CIVVANKIDLDPS----- 119 (161)
T ss_pred EEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCc-EEEEEECccCchh-----
Confidence 899999999998888888899999999999987532 1 1223344444443 677 8999999998211
Q ss_pred HHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 242 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 242 ~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. .+...+.+.. .++++++||++|.|+.++++
T Consensus 120 ~~----~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~~ 151 (161)
T cd04124 120 VT----QKKFNFAEKH------NLPLYYVSAADGTNVVKLFQ 151 (161)
T ss_pred HH----HHHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 11 1111222222 35899999999999998644
No 118
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.69 E-value=2.7e-16 Score=141.64 Aligned_cols=139 Identities=19% Similarity=0.251 Sum_probs=97.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
.+|+++|++|+|||||+++|....... .....+.|.+.....+...+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 51 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAI------------------------------VSDIAGTTRDVIEESIDIGGIPV 51 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEe------------------------------ccCCCCCccceEEEEEEeCCEEE
Confidence 479999999999999999995322110 11125666666666777788899
Q ss_pred EEEeCCCCcchHH--------HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-HcCCCeEEEEEeeccCC
Q 010278 164 TILDAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMDDH 234 (514)
Q Consensus 164 ~liDtPGh~~f~~--------~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~-~~~vp~~IvviNK~D~~ 234 (514)
+++||||+.++.. .+...+..+|++++|+|+... .+...+.... ..+.| +++++||+|+.
T Consensus 52 ~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~----------~~~~~~~~~~~~~~~~-vi~v~nK~D~~ 120 (157)
T cd04164 52 RLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRG----------LDEEDLEILELPADKP-IIVVLNKSDLL 120 (157)
T ss_pred EEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCC----------CCHHHHHHHHhhcCCC-EEEEEEchhcC
Confidence 9999999877632 344556789999999999975 3333444444 35666 99999999994
Q ss_pred CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 235 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
... . . ... ....+++++||.+|.|+.++.
T Consensus 121 ~~~--~--~---------~~~------~~~~~~~~~Sa~~~~~v~~l~ 149 (157)
T cd04164 121 PDS--E--L---------LSL------LAGKPIIAISAKTGEGLDELK 149 (157)
T ss_pred Ccc--c--c---------ccc------cCCCceEEEECCCCCCHHHHH
Confidence 321 1 0 011 124689999999999999854
No 119
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.69 E-value=1e-16 Score=143.50 Aligned_cols=153 Identities=20% Similarity=0.230 Sum_probs=94.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC--e
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~--~ 161 (514)
++|+++|++|+|||||+++|+... . ..+...+++.+.....+..++ +
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 50 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-F------------------------------ITEYKPGTTRNYVTTVIEEDGKTY 50 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-C------------------------------cCcCCCCceeeeeEEEEEECCEEE
Confidence 689999999999999999995332 1 122335677776666566677 7
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHH
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 241 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~ 241 (514)
.+.++|+||+.+|..........++.++.++|....+.................+.. +.| +++++||+|+. .+.
T Consensus 51 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p-~ivv~nK~D~~--~~~-- 124 (161)
T TIGR00231 51 KFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVP-IILVGNKIDLR--DAK-- 124 (161)
T ss_pred EEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCc-EEEEEEcccCC--cch--
Confidence 899999999999854444434444444444444322111000000122333333322 778 89999999993 221
Q ss_pred HHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 242 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 242 ~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
........+...+. .+++++||.+|.|+.+++
T Consensus 125 ----~~~~~~~~~~~~~~-----~~~~~~sa~~~~gv~~~~ 156 (161)
T TIGR00231 125 ----LKTHVAFLFAKLNG-----EPIIPLSAETGKNIDSAF 156 (161)
T ss_pred ----hhHHHHHHHhhccC-----CceEEeecCCCCCHHHHH
Confidence 33344444554443 479999999999998753
No 120
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.69 E-value=1.3e-16 Score=147.18 Aligned_cols=151 Identities=20% Similarity=0.241 Sum_probs=96.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
..++|+++|++++|||||+++|.+. .... .....|. ....+..++.
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~--~~~~----------------------------~~~t~g~----~~~~~~~~~~ 58 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGE--DIDT----------------------------ISPTLGF----QIKTLEYEGY 58 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC--CCCC----------------------------cCCcccc----ceEEEEECCE
Confidence 4578999999999999999999432 1000 0001122 1223445678
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH----HHcCCCeEEEEEeeccCCCCC
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~----~~~~vp~~IvviNK~D~~~~~ 237 (514)
.+.++||||++.|...+...+..+|++|+|+|+..... + .+..+.+..+ ...++| +++++||+|+....
T Consensus 59 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~ 131 (173)
T cd04154 59 KLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLR---L---DDCKRELKELLQEERLAGAT-LLILANKQDLPGAL 131 (173)
T ss_pred EEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHH---H---HHHHHHHHHHHhChhhcCCC-EEEEEECcccccCC
Confidence 89999999999987777777889999999999987521 0 0122222222 224677 99999999984321
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
. . +++...++..... ...++++++||++|.|+.+++
T Consensus 132 -~---~----~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~ 167 (173)
T cd04154 132 -S---E----EEIREALELDKIS-SHHWRIQPCSAVTGEGLLQGI 167 (173)
T ss_pred -C---H----HHHHHHhCccccC-CCceEEEeccCCCCcCHHHHH
Confidence 1 1 1222223221111 125789999999999998853
No 121
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.69 E-value=1.8e-16 Score=143.94 Aligned_cols=150 Identities=20% Similarity=0.183 Sum_probs=94.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
+|+++|.+++|||||+++|......... .....|.+ ...+...+..+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~----------------------------~~~t~g~~----~~~~~~~~~~~~ 48 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQI----------------------------IVPTVGFN----VESFEKGNLSFT 48 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcce----------------------------ecCccccc----eEEEEECCEEEE
Confidence 5899999999999999998432100000 00012222 223456788999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH------HcCCCeEEEEEeeccCCCCCc
Q 010278 165 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK------TLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 165 liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~------~~~vp~~IvviNK~D~~~~~~ 238 (514)
|+||||+++|...+...+..+|++|+|+|+++... + ......+..+. ..++| +++++||+|+....
T Consensus 49 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~- 120 (162)
T cd04157 49 AFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLR---L---VVVKDELELLLNHPDIKHRRVP-ILFFANKMDLPDAL- 120 (162)
T ss_pred EEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHH---H---HHHHHHHHHHHcCcccccCCCC-EEEEEeCccccCCC-
Confidence 99999999998888777899999999999987521 0 11222222221 23688 99999999984321
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
. ..++...+. +... . ...++++++||++|.|+++++
T Consensus 121 ~---~~~~~~~l~--~~~~--~-~~~~~~~~~Sa~~g~gv~~~~ 156 (162)
T cd04157 121 T---AVKITQLLG--LENI--K-DKPWHIFASNALTGEGLDEGV 156 (162)
T ss_pred C---HHHHHHHhC--Cccc--c-CceEEEEEeeCCCCCchHHHH
Confidence 1 112221111 0111 0 123578999999999999854
No 122
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.69 E-value=5.1e-16 Score=173.18 Aligned_cols=151 Identities=25% Similarity=0.283 Sum_probs=112.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
.....++|+|+|++|+|||||+|+|++....+ .+...|+|.+.....+++
T Consensus 271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~i------------------------------v~~~pGvT~d~~~~~~~~ 320 (712)
T PRK09518 271 GPKAVGVVAIVGRPNVGKSTLVNRILGRREAV------------------------------VEDTPGVTRDRVSYDAEW 320 (712)
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCeeEEEEEEEEEE
Confidence 34456889999999999999999995432111 122378999888888888
Q ss_pred CCeEEEEEeCCCCcc--------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEee
Q 010278 159 ETTRFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 230 (514)
Q Consensus 159 ~~~~i~liDtPGh~~--------f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK 230 (514)
.+..+.|+||||... |...+..++..||++|+|+|+..+.. ....+.+..++..+.| +|+|+||
T Consensus 321 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~-------~~d~~i~~~Lr~~~~p-vIlV~NK 392 (712)
T PRK09518 321 AGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLT-------STDERIVRMLRRAGKP-VVLAVNK 392 (712)
T ss_pred CCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHhcCCC-EEEEEEC
Confidence 999999999999653 45666667889999999999998743 4566677888888999 9999999
Q ss_pred ccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 231 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 231 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+|+.... . . ... +..+|+. ..+|+||++|.|+.++++
T Consensus 393 ~D~~~~~---~---~----~~~-~~~lg~~-----~~~~iSA~~g~GI~eLl~ 429 (712)
T PRK09518 393 IDDQASE---Y---D----AAE-FWKLGLG-----EPYPISAMHGRGVGDLLD 429 (712)
T ss_pred cccccch---h---h----HHH-HHHcCCC-----CeEEEECCCCCCchHHHH
Confidence 9983211 0 1 111 1223443 347999999999998644
No 123
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.69 E-value=3.1e-16 Score=142.76 Aligned_cols=150 Identities=17% Similarity=0.126 Sum_probs=94.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC--
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 160 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~-- 160 (514)
..+|+++|.+++|||||++++++... ... ....+.+.-...+...+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~~------------------------------~~~t~~~~~~~~~~~~~~~ 49 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTD------------------------------YDPTIEDSYTKQCEIDGQW 49 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--Ccc------------------------------cCCCccceEEEEEEECCEE
Confidence 47899999999999999999864221 100 00111111111222333
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~ 236 (514)
..+.++||||+++|...+...+..+|++++|+|+++... |+ ...+.+..+.. .++| +|+++||+|+...
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl~~~ 122 (164)
T cd04145 50 AILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGS---FE---EVDKFHTQILRVKDRDEFP-MILVGNKADLEHQ 122 (164)
T ss_pred EEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCCC-EEEEeeCcccccc
Confidence 568899999999998888788899999999999987521 11 11222222222 3678 8999999998421
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. ... ..+...+++..+ ++++++||++|.|+.++++
T Consensus 123 ~--~~~----~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~ 157 (164)
T cd04145 123 R--KVS----REEGQELARKLK------IPYIETSAKDRLNVDKAFH 157 (164)
T ss_pred c--eec----HHHHHHHHHHcC------CcEEEeeCCCCCCHHHHHH
Confidence 1 001 112233344332 5799999999999998643
No 124
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.68 E-value=1.7e-16 Score=147.93 Aligned_cols=159 Identities=19% Similarity=0.237 Sum_probs=95.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEE-EeCCe
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF-ETETT 161 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~-~~~~~ 161 (514)
.+.|+++|++++|||||++++++.... . .....|.+........ ...+.
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~--~----------------------------~~~t~~~~~~~~~~~~~~~~~~ 52 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV--N----------------------------TVPTKGFNTEKIKVSLGNSKGI 52 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC--C----------------------------cCCccccceeEEEeeccCCCce
Confidence 478999999999999999999532110 0 0000222222111111 22457
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCccccccc-CCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFE-KGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~-~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~ 240 (514)
.+.|+||||+++|...+...+..+|++|+|+|++.... +. ......+.+......+.| +++++||+|+... ...
T Consensus 53 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~---~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~~~~-~~~ 127 (183)
T cd04152 53 TFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVER---MEEAKTELHKITRFSENQGVP-VLVLANKQDLPNA-LSV 127 (183)
T ss_pred EEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHH---HHHHHHHHHHHHhhhhcCCCc-EEEEEECcCcccc-CCH
Confidence 89999999999997777666789999999999987521 00 000111122222335788 8999999998421 122
Q ss_pred HHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 241 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 241 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+..+ .++....+.....++++++||++|.|+.+++.
T Consensus 128 ~~~~-------~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 163 (183)
T cd04152 128 SEVE-------KLLALHELSASTPWHVQPACAIIGEGLQEGLE 163 (183)
T ss_pred HHHH-------HHhCccccCCCCceEEEEeecccCCCHHHHHH
Confidence 2221 11111111101136789999999999998755
No 125
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.68 E-value=1.8e-16 Score=144.25 Aligned_cols=134 Identities=19% Similarity=0.243 Sum_probs=88.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
+|+++|++|+|||||+++|..... . ...|. ...+ ... .
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~--------------------------------~---~~~~~---~v~~--~~~--~ 40 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT--------------------------------L---ARKTQ---AVEF--NDK--G 40 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc--------------------------------c---Cccce---EEEE--CCC--C
Confidence 699999999999999999832100 0 00111 1111 121 2
Q ss_pred EEeCCCC----cchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010278 165 ILDAPGH----KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 165 liDtPGh----~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~ 240 (514)
+|||||. .++.+.++.++..+|++|+|+|++.+.. ......+.+ ..+.| +++++||+|+...+
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s-------~~~~~~~~~--~~~~~-ii~v~nK~Dl~~~~--- 107 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPES-------RLPAGLLDI--GVSKR-QIAVISKTDMPDAD--- 107 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCccc-------ccCHHHHhc--cCCCC-eEEEEEccccCccc---
Confidence 7999995 5677777778899999999999997742 122222221 24667 89999999984321
Q ss_pred HHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 241 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 241 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. ..+..+++..++. .|++++||++|.|+.++++
T Consensus 108 --~----~~~~~~~~~~~~~----~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 108 --V----AATRKLLLETGFE----EPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred --H----HHHHHHHHHcCCC----CCEEEEECCCccCHHHHHH
Confidence 1 2233445555542 5899999999999998644
No 126
>PRK04213 GTP-binding protein; Provisional
Probab=99.68 E-value=4.8e-16 Score=147.05 Aligned_cols=156 Identities=24% Similarity=0.268 Sum_probs=94.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
+.++|+++|++|+|||||+++|....- .....+|.|.+.... ...
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-------------------------------~~~~~~~~t~~~~~~--~~~-- 52 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-------------------------------RVGKRPGVTRKPNHY--DWG-- 52 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-------------------------------ccCCCCceeeCceEE--eec--
Confidence 457899999999999999999943210 012235677654433 333
Q ss_pred EEEEEeCCCC-----------cchHHHH---H-HhhhhcCEEEEEEECCCCcc-ccccc---CCcchHHHHHHHHHcCCC
Q 010278 162 RFTILDAPGH-----------KSYVPNM---I-SGASQADIGVLVISARKGEF-ETGFE---KGGQTREHVMLAKTLGVT 222 (514)
Q Consensus 162 ~i~liDtPGh-----------~~f~~~~---~-~g~~~~D~ailVVda~~g~~-e~~~~---~~~qt~e~l~~~~~~~vp 222 (514)
.++|+||||+ +.|...+ . +++..+|++++|+|+....- ...+. ...++.+.+..+...++|
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p 132 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP 132 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC
Confidence 6899999994 3332221 2 24567899999999864210 00000 012346667777778999
Q ss_pred eEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCc-c--cCCeeEEeeccccccccccccc
Q 010278 223 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN-V--KKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 223 ~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~-~--~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+++++||+|+. +......+++.+ .+++. . ....+++++||++| |+.++++
T Consensus 133 -~iiv~NK~Dl~--~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~ 185 (201)
T PRK04213 133 -PIVAVNKMDKI--KNRDEVLDEIAE-------RLGLYPPWRQWQDIIAPISAKKG-GIEELKE 185 (201)
T ss_pred -eEEEEECcccc--CcHHHHHHHHHH-------HhcCCccccccCCcEEEEecccC-CHHHHHH
Confidence 89999999983 222222222222 22221 0 00136899999999 9998543
No 127
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.68 E-value=3.1e-16 Score=126.56 Aligned_cols=82 Identities=61% Similarity=0.947 Sum_probs=78.0
Q ss_pred CceEEEEEEEc-cCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeE
Q 010278 312 PFRMPIIDKFK-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 390 (514)
Q Consensus 312 p~~~~i~~~~~-~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~v 390 (514)
||+|+|+++|+ ..|++++|+|.+|+|++||+|.++|++..++|++|++++.++++|.|||+|+++|++++..++++||+
T Consensus 1 p~r~~V~~v~~~~~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v~~G~v 80 (83)
T cd03698 1 PFRLPISDKYKDQGGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISPGDV 80 (83)
T ss_pred CeEEEEEeEEEcCCCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEECCeECCEECCCCEEEEEECCCCHHHCCCCCE
Confidence 79999999993 28999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred Ecc
Q 010278 391 LSS 393 (514)
Q Consensus 391 l~~ 393 (514)
|++
T Consensus 81 l~~ 83 (83)
T cd03698 81 LCS 83 (83)
T ss_pred EeC
Confidence 974
No 128
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.68 E-value=5.8e-16 Score=140.61 Aligned_cols=149 Identities=18% Similarity=0.234 Sum_probs=99.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC--eE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TR 162 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~--~~ 162 (514)
+|+++|++++|||||+++|+...-. .....+.+.+.....+..++ ..
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 50 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFD-------------------------------NQYQATIGIDFLSKTMYLEDKTVR 50 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-------------------------------ccCCCceeeeEEEEEEEECCEEEE
Confidence 6999999999999999999532211 12224555555555555554 46
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-HHcC--CCeEEEEEeeccCCCCCch
Q 010278 163 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLG--VTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 163 i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~-~~~~--vp~~IvviNK~D~~~~~~~ 239 (514)
+.|+||||+.+|.......+..+|++|+|+|++.... |+ +....+..+ ...+ +| +++++||+|+... .
T Consensus 51 l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-iilv~nK~D~~~~--~ 121 (161)
T cd01861 51 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQS---FD---NTDKWIDDVRDERGNDVI-IVLVGNKTDLSDK--R 121 (161)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCE-EEEEEEChhcccc--C
Confidence 8999999999998888888899999999999987532 11 223333333 2333 77 9999999998321 1
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. ..++...+.+.. +++++++||.+|.|+.++++
T Consensus 122 ~~----~~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 122 QV----STEEGEKKAKEL------NAMFIETSAKAGHNVKELFR 155 (161)
T ss_pred cc----CHHHHHHHHHHh------CCEEEEEeCCCCCCHHHHHH
Confidence 11 112222222332 35799999999999998643
No 129
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.68 E-value=4.5e-16 Score=141.60 Aligned_cols=149 Identities=21% Similarity=0.261 Sum_probs=96.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC--e
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~--~ 161 (514)
++|+++|++++|||||+++|+... .. ......++.+.....+...+ .
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 49 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGK--FS-----------------------------EQYKSTIGVDFKTKTIEVDGKRV 49 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC--CC-----------------------------CCCCCceeeEEEEEEEEECCEEE
Confidence 479999999999999999994321 10 11112233333333444444 5
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCC-C
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV-N 237 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~~~-~ 237 (514)
.+.|+|+||+.+|.......+..+|++|+|+|+.+... ++ .....+..+.. .++| +++++||+|+... .
T Consensus 50 ~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~l~~~~~~~~~~~p-ivvv~nK~D~~~~~~ 122 (164)
T smart00175 50 KLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRES---FE---NLKNWLKELREYADPNVV-IMLVGNKSDLEDQRQ 122 (164)
T ss_pred EEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEEchhcccccC
Confidence 78999999999998888888899999999999987532 10 11112222222 3577 9999999998421 1
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
++.+ ....+.+..+ ++++++|+.+|.|+.++++
T Consensus 123 ~~~~-------~~~~~~~~~~------~~~~e~Sa~~~~~i~~l~~ 155 (164)
T smart00175 123 VSRE-------EAEAFAEEHG------LPFFETSAKTNTNVEEAFE 155 (164)
T ss_pred CCHH-------HHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 1111 1222333333 5799999999999998643
No 130
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.68 E-value=2.3e-16 Score=143.18 Aligned_cols=149 Identities=21% Similarity=0.296 Sum_probs=94.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
+|+++|++++|||||+++|.. +.... .. .|+......+...+..+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~--~~~~~----------------------------~~----~t~~~~~~~~~~~~~~~~ 46 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQL--GEVVT----------------------------TI----PTIGFNVETVTYKNLKFQ 46 (158)
T ss_pred CEEEECCCCCCHHHHHHHHcc--CCCcC----------------------------cC----CccCcCeEEEEECCEEEE
Confidence 489999999999999999832 11000 00 011111223455678899
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHH-HHHH---cCCCeEEEEEeeccCCCCCchH
Q 010278 165 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKT---LGVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 165 liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~-~~~~---~~vp~~IvviNK~D~~~~~~~~ 240 (514)
|+||||+.+|...+...+..+|++|+|+|++.... + ....+.+. ++.. .+.| +++++||+|+.... .
T Consensus 47 i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~-~- 117 (158)
T cd04151 47 VWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDR---L---GTAKEELHAMLEEEELKGAV-LLVFANKQDMPGAL-S- 117 (158)
T ss_pred EEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhcCCc-EEEEEeCCCCCCCC-C-
Confidence 99999999998877777889999999999986421 0 11223332 2222 3677 99999999984332 1
Q ss_pred HHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 241 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 241 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
..++...+ ....+. ....+++++||++|.|+.++++
T Consensus 118 --~~~i~~~~----~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 118 --EAEISEKL----GLSELK-DRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred --HHHHHHHh----CccccC-CCcEEEEEeeccCCCCHHHHHH
Confidence 11222222 111111 1235899999999999998543
No 131
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.67 E-value=4.7e-16 Score=140.93 Aligned_cols=148 Identities=17% Similarity=0.135 Sum_probs=92.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC--e
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~--~ 161 (514)
.+|+++|.+|+|||||+++|+.. ..... ....+.+.-...+..++ .
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~--~~~~~------------------------------~~~t~~~~~~~~~~~~~~~~ 49 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQN--HFVDE------------------------------YDPTIEDSYRKQVVIDGETC 49 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC--CCcCC------------------------------cCCcchheEEEEEEECCEEE
Confidence 57999999999999999999532 11100 00000000111222333 5
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH----HcCCCeEEEEEeeccCCCCC
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~----~~~vp~~IvviNK~D~~~~~ 237 (514)
.+.++||||+++|...+...+..+|++++|+|..+... |+ .....+..+. ..++| ++++.||+|+....
T Consensus 50 ~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~ 122 (162)
T cd04138 50 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKS---FE---DIHTYREQIKRVKDSDDVP-MVLVGNKCDLAART 122 (162)
T ss_pred EEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECcccccce
Confidence 57899999999998888888889999999999886421 11 1111222222 23677 89999999984311
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. ...++..+.+.. .++++++||++|.|+.++++
T Consensus 123 ~-------~~~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 123 V-------SSRQGQDLAKSY------GIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred e-------cHHHHHHHHHHh------CCeEEEecCCCCCCHHHHHH
Confidence 1 112222333333 25799999999999998643
No 132
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.67 E-value=8.6e-16 Score=139.78 Aligned_cols=152 Identities=18% Similarity=0.235 Sum_probs=98.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
.+|+++|++++|||||+++|++..- .. ......|.+.......+......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~t~~~~~~~~~v~~~~~~~~~ 52 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEF--SE---------------------------NQESTIGAAFLTQTVNLDDTTVKF 52 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CC---------------------------CCCCccceeEEEEEEEECCEEEEE
Confidence 5799999999999999999953221 00 011112333333333344445678
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCCchH
Q 010278 164 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 164 ~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK~D~~~~~~~~ 240 (514)
.++|+||+++|.......++.+|++|+|+|++.... + .+....+..+... ++| +++++||+|+.....
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~-- 123 (163)
T cd01860 53 EIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEES---F---EKAKSWVKELQRNASPNII-IALVGNKADLESKRQ-- 123 (163)
T ss_pred EEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCCe-EEEEEECccccccCc--
Confidence 999999999998877777789999999999986521 1 1334444444444 366 899999999842111
Q ss_pred HHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 241 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 241 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... +++..+....+ ++++++||++|.|+.++++
T Consensus 124 ~~~----~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd01860 124 VST----EEAQEYADENG------LLFFETSAKTGENVNELFT 156 (163)
T ss_pred CCH----HHHHHHHHHcC------CEEEEEECCCCCCHHHHHH
Confidence 011 12223333332 5799999999999998643
No 133
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.67 E-value=4.7e-16 Score=141.39 Aligned_cols=149 Identities=21% Similarity=0.225 Sum_probs=96.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC--Ce
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~--~~ 161 (514)
.+|+++|++++|||||+++|+...-. .+....++.+.....+..+ ..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 49 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFK-------------------------------EDSQHTIGVEFGSKIIRVGGKRV 49 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-------------------------------CCCCCceeeeEEEEEEEECCEEE
Confidence 47999999999999999999532211 0011222222222223333 35
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH---HcCCCeEEEEEeeccCCCCCc
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK---TLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~---~~~vp~~IvviNK~D~~~~~~ 238 (514)
.+.|+||||+++|.......++.+|++|+|+|++++.. + .+....+..++ ..++| ++++.||+|+...
T Consensus 50 ~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~-- 120 (161)
T cd04113 50 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTS---F---EALPTWLSDARALASPNIV-VILVGNKSDLADQ-- 120 (161)
T ss_pred EEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCCe-EEEEEEchhcchh--
Confidence 78999999999998888888899999999999988632 1 12223333333 23677 8999999998321
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
.. ....++..+.+..+ ++++.+||++|.|+.+++
T Consensus 121 ~~----~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 121 RE----VTFLEASRFAQENG------LLFLETSALTGENVEEAF 154 (161)
T ss_pred cc----CCHHHHHHHHHHcC------CEEEEEECCCCCCHHHHH
Confidence 10 11122333344333 579999999999999864
No 134
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.67 E-value=1.5e-15 Score=139.27 Aligned_cols=146 Identities=16% Similarity=0.222 Sum_probs=94.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC--e
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~--~ 161 (514)
.+|+++|++++|||||+++|+...- .. .....+..+.....+.+++ .
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~--~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 49 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKF--SN-----------------------------QYKATIGADFLTKEVTVDDKLV 49 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--Cc-----------------------------CcCCccceEEEEEEEEECCEEE
Confidence 3799999999999999999953211 00 0001111122222233444 4
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHH-----HHHHHc------CCCeEEEEEee
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-----MLAKTL------GVTKLLLVVNK 230 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l-----~~~~~~------~vp~~IvviNK 230 (514)
.+.|+|+||++.|.......++.+|++|+|+|+.... +.+.+ .+.... ++| +++++||
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK 118 (172)
T cd01862 50 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPK----------SFESLDSWRDEFLIQASPSDPENFP-FVVLGNK 118 (172)
T ss_pred EEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCccCCCCce-EEEEEEC
Confidence 5779999999999888888889999999999998752 22222 112221 677 8999999
Q ss_pred ccCCCCC-chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 231 MDDHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 231 ~D~~~~~-~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+|+...+ ... +++..+++..+ .++++++|+++|.|+.++++
T Consensus 119 ~Dl~~~~~~~~-------~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 119 IDLEEKRQVST-------KKAQQWCQSNG-----NIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred cccccccccCH-------HHHHHHHHHcC-----CceEEEEECCCCCCHHHHHH
Confidence 9994211 111 22233334333 35899999999999988644
No 135
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.67 E-value=1.6e-15 Score=137.77 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=95.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
++|+++|.+++|||||+++|+...-. . ......+.+.......+......+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFD--P---------------------------DLAATIGVDFKVKTLTVDGKKVKL 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC--c---------------------------ccCCcccceEEEEEEEECCEEEEE
Confidence 47999999999999999999532110 0 011123333333333333334678
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCCCch
Q 010278 164 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 164 ~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~~~~ 239 (514)
.|+||||+++|.......++.+|++|+|+|+..... ++ ....++..+.. .++| +++++||+|+......
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~~~~~~~ 124 (161)
T cd01863 52 AIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDT---FT---NLETWLNELETYSTNNDIV-KMLVGNKIDKENREVT 124 (161)
T ss_pred EEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHH---HH---hHHHHHHHHHHhCCCCCCc-EEEEEECCcccccccC
Confidence 999999999998777777889999999999986532 11 11222332322 3577 8899999999422211
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
. ++...+.+.. .++++++||++|.|+.+++
T Consensus 125 ~-------~~~~~~~~~~------~~~~~~~Sa~~~~gi~~~~ 154 (161)
T cd01863 125 R-------EEGLKFARKH------NMLFIETSAKTRDGVQQAF 154 (161)
T ss_pred H-------HHHHHHHHHc------CCEEEEEecCCCCCHHHHH
Confidence 1 1222233332 3689999999999999863
No 136
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.66 E-value=1.3e-15 Score=143.16 Aligned_cols=153 Identities=18% Similarity=0.224 Sum_probs=101.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
....++|+++|++|+|||||+++|+..... . ......|.|.......+
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~-~----------------------------~~~~~~~~t~~~~~~~~--- 68 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNL-A----------------------------RTSKTPGRTQLINFFEV--- 68 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCc-c----------------------------cccCCCCceeEEEEEec---
Confidence 446689999999999999999999542100 0 01112455655544332
Q ss_pred CeEEEEEeCCCCc----------chHH---HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEE
Q 010278 160 TTRFTILDAPGHK----------SYVP---NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 226 (514)
Q Consensus 160 ~~~i~liDtPGh~----------~f~~---~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~Iv 226 (514)
+..+.|+||||+. .|.. ..++....++++++|+|+..+.. ....+.+..+...++| +++
T Consensus 69 ~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------~~~~~i~~~l~~~~~~-~ii 140 (196)
T PRK00454 69 NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLK-------ELDLQMIEWLKEYGIP-VLI 140 (196)
T ss_pred CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCC-------HHHHHHHHHHHHcCCc-EEE
Confidence 4789999999962 2322 22333345678999999887632 2344556667778888 899
Q ss_pred EEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 227 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 227 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
++||+|+ .+ ....+.+.+.+...+... ..+++|+||++|.|+.+++
T Consensus 141 v~nK~Dl--~~--~~~~~~~~~~i~~~l~~~------~~~~~~~Sa~~~~gi~~l~ 186 (196)
T PRK00454 141 VLTKADK--LK--KGERKKQLKKVRKALKFG------DDEVILFSSLKKQGIDELR 186 (196)
T ss_pred EEECccc--CC--HHHHHHHHHHHHHHHHhc------CCceEEEEcCCCCCHHHHH
Confidence 9999998 32 233444455555555443 2578999999999998854
No 137
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.66 E-value=1.6e-15 Score=137.51 Aligned_cols=152 Identities=21% Similarity=0.212 Sum_probs=99.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
...+|+++|.+|+|||||+++|+...-... ......+.......+...+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 51 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIV------------------------------SPKPQTTRNRIRGIYTDDDA 51 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEec------------------------------cCCCCceeceEEEEEEcCCe
Confidence 357899999999999999999953211100 00112233333333445568
Q ss_pred EEEEEeCCCCcch--------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 162 RFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 162 ~i~liDtPGh~~f--------~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
.+.|+||||+... .......+..+|++++|+|+.+... ......+..+...+.| +++++||+|+
T Consensus 52 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~-------~~~~~~~~~~~~~~~~-~iiv~nK~Dl 123 (168)
T cd04163 52 QIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIG-------EGDEFILELLKKSKTP-VILVLNKIDL 123 (168)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccC-------chHHHHHHHHHHhCCC-EEEEEEchhc
Confidence 8999999997543 2234455788999999999998621 3455566667777888 8999999998
Q ss_pred CCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 234 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 234 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
.. ......+....+.. ..+ ..+++++|++++.|+.++.
T Consensus 124 ~~---~~~~~~~~~~~~~~---~~~-----~~~~~~~s~~~~~~~~~l~ 161 (168)
T cd04163 124 VK---DKEDLLPLLEKLKE---LGP-----FAEIFPISALKGENVDELL 161 (168)
T ss_pred cc---cHHHHHHHHHHHHh---ccC-----CCceEEEEeccCCChHHHH
Confidence 32 12222333333222 211 2589999999999998853
No 138
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.66 E-value=3.6e-16 Score=165.73 Aligned_cols=143 Identities=22% Similarity=0.332 Sum_probs=103.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeE
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 162 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~ 162 (514)
...||++|+||+|||||+|+|. |. ... ..+-.|+|++.....+...++.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LT---G~------------------~q~----------VgNwpGvTVEkkeg~~~~~~~~ 51 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALT---GA------------------NQK----------VGNWPGVTVEKKEGKLKYKGHE 51 (653)
T ss_pred cceEEEecCCCccHHHHHHHHh---cc------------------Cce----------ecCCCCeeEEEEEEEEEecCce
Confidence 3569999999999999999993 22 112 2333999999999999999999
Q ss_pred EEEEeCCCCcch---------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHH---HHHcCCCeEEEEEee
Q 010278 163 FTILDAPGHKSY---------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML---AKTLGVTKLLLVVNK 230 (514)
Q Consensus 163 i~liDtPGh~~f---------~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~---~~~~~vp~~IvviNK 230 (514)
+.++|+||..++ .+..+. -..+|++|.||||. +.++++++ +..+|+| +|+++|+
T Consensus 52 i~ivDLPG~YSL~~~S~DE~Var~~ll-~~~~D~ivnVvDAt------------nLeRnLyltlQLlE~g~p-~ilaLNm 117 (653)
T COG0370 52 IEIVDLPGTYSLTAYSEDEKVARDFLL-EGKPDLIVNVVDAT------------NLERNLYLTLQLLELGIP-MILALNM 117 (653)
T ss_pred EEEEeCCCcCCCCCCCchHHHHHHHHh-cCCCCEEEEEcccc------------hHHHHHHHHHHHHHcCCC-eEEEecc
Confidence 999999995443 222222 24789999999997 45555555 5567999 9999999
Q ss_pred ccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 231 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 231 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+|.... +-+.-+..++-+.+ .+|++|+||.+|.|++++..
T Consensus 118 ~D~A~~-------~Gi~ID~~~L~~~L------GvPVv~tvA~~g~G~~~l~~ 157 (653)
T COG0370 118 IDEAKK-------RGIRIDIEKLSKLL------GVPVVPTVAKRGEGLEELKR 157 (653)
T ss_pred HhhHHh-------cCCcccHHHHHHHh------CCCEEEEEeecCCCHHHHHH
Confidence 998321 11122222223333 37999999999999988643
No 139
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.66 E-value=3.6e-16 Score=139.21 Aligned_cols=132 Identities=23% Similarity=0.238 Sum_probs=84.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
+|+++|++|+|||||+++|....- ....|+. +.+.. .
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~-----------------------------------~~~~t~~-----~~~~~---~ 38 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI-----------------------------------LYKKTQA-----VEYND---G 38 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc-----------------------------------cccccee-----EEEcC---e
Confidence 699999999999999999842110 0001211 12222 6
Q ss_pred EEeCCCCc----chHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010278 165 ILDAPGHK----SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 165 liDtPGh~----~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~ 240 (514)
++||||+. .+.+.+...++.+|++|+|+|++.+.. .+..+.+ ...+.| +|+++||+|+.. ..
T Consensus 39 ~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s-------~~~~~~~---~~~~~p-~ilv~NK~Dl~~--~~- 104 (142)
T TIGR02528 39 AIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPES-------RFPPGFA---SIFVKP-VIGLVTKIDLAE--AD- 104 (142)
T ss_pred eecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCc-------CCChhHH---HhccCC-eEEEEEeeccCC--cc-
Confidence 89999973 445555556789999999999988743 1222222 223446 889999999832 11
Q ss_pred HHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 241 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 241 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
.. .+++..+++..++ .+++++||++|.|+.+++
T Consensus 105 ~~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 105 VD----IERAKELLETAGA-----EPIFEISSVDEQGLEALV 137 (142)
T ss_pred cC----HHHHHHHHHHcCC-----CcEEEEecCCCCCHHHHH
Confidence 11 1223334444432 379999999999998853
No 140
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.66 E-value=5.9e-16 Score=143.10 Aligned_cols=150 Identities=21% Similarity=0.262 Sum_probs=96.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeE
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 162 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~ 162 (514)
..+|+++|++++|||||+++|.. +.... ...|+......+...+..
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~--~~~~~--------------------------------~~~t~~~~~~~~~~~~~~ 60 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLL--GEVVH--------------------------------TSPTIGSNVEEIVYKNIR 60 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHcc--CCCCC--------------------------------cCCccccceEEEEECCeE
Confidence 47899999999999999999942 21100 011222223345567889
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHH-HHHHH---cCCCeEEEEEeeccCCCCCc
Q 010278 163 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT---LGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 163 i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l-~~~~~---~~vp~~IvviNK~D~~~~~~ 238 (514)
+.|+||||+..|.......+..+|++|+|+|++.... + ....+.+ .++.. .++| +++++||+|+... .
T Consensus 61 ~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~---~---~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl~~~-~ 132 (174)
T cd04153 61 FLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRER---L---PLTKEELYKMLAHEDLRKAV-LLVLANKQDLKGA-M 132 (174)
T ss_pred EEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhcCCC-EEEEEECCCCCCC-C
Confidence 9999999999998887777889999999999987521 0 0112222 22222 2577 9999999998431 1
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
+ .+++.+.+. ..... ...++++++||++|.|+.+++
T Consensus 133 ~---~~~i~~~l~----~~~~~-~~~~~~~~~SA~~g~gi~e~~ 168 (174)
T cd04153 133 T---PAEISESLG----LTSIR-DHTWHIQGCCALTGEGLPEGL 168 (174)
T ss_pred C---HHHHHHHhC----ccccc-CCceEEEecccCCCCCHHHHH
Confidence 1 122222221 00011 124689999999999999854
No 141
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.66 E-value=5.5e-16 Score=158.02 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=110.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
..-++++|+|.||+|||||+|+|+.....|... ..|.|.|+-..++..++
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTd------------------------------I~GTTRDviee~i~i~G 264 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTD------------------------------IAGTTRDVIEEDINLNG 264 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecC------------------------------CCCCccceEEEEEEECC
Confidence 356899999999999999999998776655432 28999999999999999
Q ss_pred eEEEEEeCCCCcch--------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010278 161 TRFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 232 (514)
Q Consensus 161 ~~i~liDtPGh~~f--------~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D 232 (514)
+.+.|+||+|.++- +......+..||.+++|+|++.+.. .+....+. +...+.| +++++||.|
T Consensus 265 ~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~-------~~d~~~~~-~~~~~~~-~i~v~NK~D 335 (454)
T COG0486 265 IPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLD-------KEDLALIE-LLPKKKP-IIVVLNKAD 335 (454)
T ss_pred EEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCc-------hhhHHHHH-hcccCCC-EEEEEechh
Confidence 99999999996543 4444556789999999999998632 34555555 3445566 899999999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+.... .. ..+ +. ....+++++|+++|+|++.|.+
T Consensus 336 L~~~~-~~-------~~~-----~~----~~~~~~i~iSa~t~~Gl~~L~~ 369 (454)
T COG0486 336 LVSKI-EL-------ESE-----KL----ANGDAIISISAKTGEGLDALRE 369 (454)
T ss_pred ccccc-cc-------chh-----hc----cCCCceEEEEecCccCHHHHHH
Confidence 94332 10 000 11 1134799999999999998654
No 142
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.65 E-value=1.1e-15 Score=140.39 Aligned_cols=151 Identities=20% Similarity=0.174 Sum_probs=96.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeE
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 162 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~ 162 (514)
..+|+++|++|+|||||+++|+...-... .....|.+.......+......
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~~ 54 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMITIDGKQIK 54 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-----------------------------CCCccceeEEEEEEEECCEEEE
Confidence 37899999999999999999843211000 0011233333333333333457
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCC-Cc
Q 010278 163 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV-NW 238 (514)
Q Consensus 163 i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~~~-~~ 238 (514)
+.|+||||+++|.......+..+|++|+|+|++.... ++ .....+..++. .++| +|++.||+|+... ..
T Consensus 55 ~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~ 127 (168)
T cd01866 55 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLTSWLEDARQHSNSNMT-IMLIGNKCDLESRREV 127 (168)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCc-EEEEEECcccccccCC
Confidence 8999999999988877777889999999999986432 11 22223333333 2577 8999999998421 11
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
+. ++...+++.. .++++++||++|.|+.+++
T Consensus 128 ~~-------~~~~~~~~~~------~~~~~e~Sa~~~~~i~~~~ 158 (168)
T cd01866 128 SY-------EEGEAFAKEH------GLIFMETSAKTASNVEEAF 158 (168)
T ss_pred CH-------HHHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 11 2222333333 3579999999999999854
No 143
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.65 E-value=2e-15 Score=137.17 Aligned_cols=149 Identities=17% Similarity=0.162 Sum_probs=94.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe----C
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET----E 159 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~----~ 159 (514)
++|+++|.+++|||||+++|... ... .+..+.+..+.....+.. .
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~--~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~ 49 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKG--IFT-----------------------------KDYKKTIGVDFLEKQIFLRQSDE 49 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--CCC-----------------------------CCCCCcEEEEEEEEEEEEcCCCC
Confidence 36999999999999999998431 110 000122222322222333 2
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH--HcCCCeEEEEEeeccCCCCC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK--TLGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~--~~~vp~~IvviNK~D~~~~~ 237 (514)
...+.|+||||+++|...+...++.+|++++|+|+..... ++ .....+..+. ..++| +|+++||+|+...
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s---~~---~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~- 121 (162)
T cd04106 50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRES---FE---AIESWKEKVEAECGDIP-MVLVQTKIDLLDQ- 121 (162)
T ss_pred EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEEChhcccc-
Confidence 4679999999999998888778899999999999987532 11 1111222222 23788 8999999998321
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
.... .++...+.+.++ ++++++||++|.|+.+++
T Consensus 122 -~~v~----~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~ 155 (162)
T cd04106 122 -AVIT----NEEAEALAKRLQ------LPLFRTSVKDDFNVTELF 155 (162)
T ss_pred -cCCC----HHHHHHHHHHcC------CeEEEEECCCCCCHHHHH
Confidence 1100 122233333333 589999999999998853
No 144
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.65 E-value=1.3e-15 Score=136.90 Aligned_cols=151 Identities=19% Similarity=0.215 Sum_probs=97.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
++|+++|.+++|||||+++|........ ..+..+.+..............+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~~~ 51 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-----------------------------YKSTIGVDFKSKTIEIDGKTVKL 51 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-----------------------------cCCceeeeeEEEEEEECCEEEEE
Confidence 4799999999999999999943221100 00112222222222222244778
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCCchH
Q 010278 164 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 164 ~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK~D~~~~~~~~ 240 (514)
.++|+||+..|.......+..+|++|+|+|+.+... + ......+..+... +.| +++++||+|+... ..
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~--~~ 122 (159)
T cd00154 52 QIWDTAGQERFRSITPSYYRGAHGAILVYDITNRES---F---ENLDKWLKELKEYAPENIP-IILVGNKIDLEDQ--RQ 122 (159)
T ss_pred EEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCCc-EEEEEEccccccc--cc
Confidence 999999999999888888899999999999987421 1 1233344444443 377 9999999999411 11
Q ss_pred HHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 241 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 241 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
...+++..+.... .++++.+|+++|.|+.+++
T Consensus 123 ----~~~~~~~~~~~~~------~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 123 ----VSTEEAQQFAKEN------GLLFFETSAKTGENVEELF 154 (159)
T ss_pred ----ccHHHHHHHHHHc------CCeEEEEecCCCCCHHHHH
Confidence 1122333333332 3589999999999998853
No 145
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.65 E-value=6.3e-16 Score=142.15 Aligned_cols=151 Identities=17% Similarity=0.210 Sum_probs=95.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
+.++|+++|+.++|||||+++|.. +.... .....|.++ ..+.....
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~--~~~~~----------------------------~~~t~g~~~----~~~~~~~~ 53 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKL--GQSVT----------------------------TIPTVGFNV----ETVTYKNV 53 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHcc--CCCcc----------------------------ccCCcccce----EEEEECCE
Confidence 457999999999999999999842 11100 000012222 23344678
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-H---HcCCCeEEEEEeeccCCCCC
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-K---TLGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~-~---~~~vp~~IvviNK~D~~~~~ 237 (514)
.+.|+||||+++|.......++.+|++|+|+|++.... + ....+.+... . ..++| ++++.||+|+...
T Consensus 54 ~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~- 125 (168)
T cd04149 54 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDR---I---DEARQELHRIINDREMRDAL-LLVFANKQDLPDA- 125 (168)
T ss_pred EEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhh---H---HHHHHHHHHHhcCHhhcCCc-EEEEEECcCCccC-
Confidence 89999999999998777677789999999999987421 1 1222333222 2 23577 9999999998421
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
.+ .+++.+. ++..... ...++++++||++|.|+.+++
T Consensus 126 ~~---~~~i~~~----~~~~~~~-~~~~~~~~~SAk~g~gv~~~~ 162 (168)
T cd04149 126 MK---PHEIQEK----LGLTRIR-DRNWYVQPSCATSGDGLYEGL 162 (168)
T ss_pred CC---HHHHHHH----cCCCccC-CCcEEEEEeeCCCCCChHHHH
Confidence 11 1222222 2111111 113578999999999998853
No 146
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.65 E-value=7.7e-16 Score=146.00 Aligned_cols=147 Identities=20% Similarity=0.192 Sum_probs=91.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
...++|+++|++|+|||||+++|....... ....+.|++.....+.+.+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~ 87 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYA-------------------------------EDQLFATLDPTTRRLRLPD 87 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhcc-------------------------------CCccceeccceeEEEEecC
Confidence 345899999999999999999995432110 0012233333334444444
Q ss_pred e-EEEEEeCCCCcch--------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEE
Q 010278 161 T-RFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVV 228 (514)
Q Consensus 161 ~-~i~liDtPGh~~f--------~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~Ivvi 228 (514)
. .+.|+||||+.+. ...+...+..+|++++|+|++.+... .+...+...+... ++| +++|+
T Consensus 88 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~------~~~~~~~~~l~~~~~~~~~-viiV~ 160 (204)
T cd01878 88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYE------EQIETVEKVLKELGAEDIP-MILVL 160 (204)
T ss_pred CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChh------hHHHHHHHHHHHcCcCCCC-EEEEE
Confidence 3 8999999998331 11222335689999999999876421 1223333444433 567 99999
Q ss_pred eeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 229 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 229 NK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
||+|+... .. .. ..+.. ...+++++||++|.|+.+++
T Consensus 161 NK~Dl~~~--~~--~~-------~~~~~------~~~~~~~~Sa~~~~gi~~l~ 197 (204)
T cd01878 161 NKIDLLDD--EE--LE-------ERLEA------GRPDAVFISAKTGEGLDELL 197 (204)
T ss_pred EccccCCh--HH--HH-------HHhhc------CCCceEEEEcCCCCCHHHHH
Confidence 99999322 11 11 11211 13579999999999998854
No 147
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.65 E-value=8e-16 Score=141.48 Aligned_cols=150 Identities=19% Similarity=0.163 Sum_probs=94.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
+|+++|..++|||||+++|... .... ...|+......++..+..+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~--~~~~--------------------------------~~~T~~~~~~~~~~~~~~i~ 46 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQD--EFMQ--------------------------------PIPTIGFNVETVEYKNLKFT 46 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcC--CCCC--------------------------------cCCcCceeEEEEEECCEEEE
Confidence 4889999999999999998432 1000 11122222234566788999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-H---cCCCeEEEEEeeccCCCCCchH
Q 010278 165 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-T---LGVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 165 liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~-~---~~vp~~IvviNK~D~~~~~~~~ 240 (514)
|+||||+.+|.......+..+|++|+|+|++.... + ....+.+..+. . .+.| ++++.||+|+... .+
T Consensus 47 l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~-~~- 117 (169)
T cd04158 47 IWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDR---V---SEAHSELAKLLTEKELRDAL-LLIFANKQDVAGA-LS- 117 (169)
T ss_pred EEECCCChhcchHHHHHhccCCEEEEEEeCCcHHH---H---HHHHHHHHHHhcChhhCCCC-EEEEEeCcCcccC-CC-
Confidence 99999999988877777889999999999876421 1 12223232222 1 2366 9999999998321 11
Q ss_pred HHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 241 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 241 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.+++ ..+++..++.....+.++++||++|.|+.++++
T Consensus 118 --~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~ 154 (169)
T cd04158 118 --VEEM----TELLSLHKLCCGRSWYIQGCDARSGMGLYEGLD 154 (169)
T ss_pred --HHHH----HHHhCCccccCCCcEEEEeCcCCCCCCHHHHHH
Confidence 1122 222211111001135788999999999998643
No 148
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.65 E-value=1e-15 Score=139.58 Aligned_cols=147 Identities=20% Similarity=0.172 Sum_probs=91.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe--CCeE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETTR 162 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~--~~~~ 162 (514)
+|+++|++|+|||||+++|+... ..... ...+.+.-...+.. ....
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~--~~~~~------------------------------~~t~~~~~~~~~~~~~~~~~ 49 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGH--FVDDY------------------------------DPTIEDSYRKQIEIDGEVCL 49 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--CCccc------------------------------CCchhhhEEEEEEECCEEEE
Confidence 69999999999999999995322 11000 00000000111222 2357
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-HH---cCCCeEEEEEeeccCCCCC-
Q 010278 163 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KT---LGVTKLLLVVNKMDDHTVN- 237 (514)
Q Consensus 163 i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~-~~---~~vp~~IvviNK~D~~~~~- 237 (514)
+.++||||+++|.......+..+|++++|+|+..... ++ ........+ .. .++| +|++.||+|+....
T Consensus 50 l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~~~~~ 122 (164)
T smart00173 50 LDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQS---FE---EIKKFREQILRVKDRDDVP-IVLVGNKCDLESERV 122 (164)
T ss_pred EEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccccccce
Confidence 8899999999998888778899999999999987421 11 111212222 11 2567 89999999984211
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... +....+.+.. ..+++++||++|.|+.++++
T Consensus 123 ~~~-------~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 123 VST-------EEGKELARQW------GCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred EcH-------HHHHHHHHHc------CCEEEEeecCCCCCHHHHHH
Confidence 111 1222233332 25899999999999998643
No 149
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.64 E-value=1.1e-15 Score=140.14 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=95.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeE
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 162 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~ 162 (514)
..+|+++|.+++|||||++++.. +..... .....|.+.......+......
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~--~~f~~~---------------------------~~~t~~~~~~~~~~~~~~~~~~ 53 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSE--DSFNPS---------------------------FISTIGIDFKIRTIELDGKKIK 53 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhh--CcCCcc---------------------------cccCccceEEEEEEEECCEEEE
Confidence 47899999999999999999943 211100 0001122222222222222357
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCCCch
Q 010278 163 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 163 i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~~~~~~ 239 (514)
+.|+||||+++|.......+..+|++|+|+|++++.. |+ +..+.+..+.. .++| ++++.||+|+....
T Consensus 54 l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~-- 124 (167)
T cd01867 54 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKS---FE---NIRNWMRNIEEHASEDVE-RMLVGNKCDMEEKR-- 124 (167)
T ss_pred EEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHH---HH---hHHHHHHHHHHhCCCCCc-EEEEEECccccccc--
Confidence 8999999999988877777889999999999987532 11 22233333332 3567 89999999994211
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+... ++...+.+.. ..+++++||++|.|+.+++.
T Consensus 125 ~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~~~~ 158 (167)
T cd01867 125 VVSK----EEGEALADEY------GIKFLETSAKANINVEEAFF 158 (167)
T ss_pred CCCH----HHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 1111 1222233333 35899999999999998643
No 150
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.64 E-value=1.4e-15 Score=139.14 Aligned_cols=151 Identities=21% Similarity=0.191 Sum_probs=96.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC--C
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 160 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~--~ 160 (514)
..+|+++|.+|+|||||+++|+.. ... ......++.+.....+... .
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~--~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~ 50 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADD--TYT-----------------------------ESYISTIGVDFKIRTIELDGKT 50 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC--CCC-----------------------------CCCCCccceeEEEEEEEECCEE
Confidence 368999999999999999999432 110 0001222222222333333 3
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~~~~ 237 (514)
..+.|+||||+++|.......++.+|++|+|+|+++... |. +..+.+..+.. .++| +|++.||+|+....
T Consensus 51 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~~---~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~ 123 (166)
T cd01869 51 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---FN---NVKQWLQEIDRYASENVN-KLLVGNKCDLTDKR 123 (166)
T ss_pred EEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHH---HH---hHHHHHHHHHHhCCCCCc-EEEEEEChhccccc
Confidence 578999999999998877777889999999999987421 11 23333333333 3567 89999999983221
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.... ++...+.+.. .++++++||++|.|+.+++.
T Consensus 124 --~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~~~~ 157 (166)
T cd01869 124 --VVDY----SEAQEFADEL------GIPFLETSAKNATNVEQAFM 157 (166)
T ss_pred --CCCH----HHHHHHHHHc------CCeEEEEECCCCcCHHHHHH
Confidence 1111 1222233332 35899999999999998643
No 151
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.64 E-value=1.7e-15 Score=138.78 Aligned_cols=153 Identities=18% Similarity=0.146 Sum_probs=96.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
+...+|+++|++|+|||||+++|.. +.... .....++.+.....+...+
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 53 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQ--GLFPP-----------------------------GQGATIGVDFMIKTVEIKG 53 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHh--CCCCC-----------------------------CCCCceeeEEEEEEEEECC
Confidence 4568999999999999999999842 21110 0012222233333344554
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH---HcCCCeEEEEEeeccCCC
Q 010278 161 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK---TLGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 161 --~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~---~~~vp~~IvviNK~D~~~ 235 (514)
..+.|+|+||+..|.......+..+|++|+|+|+..+.. ++ .....+..++ ..++| ++++.||+|+..
T Consensus 54 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~~-~i~v~NK~D~~~ 126 (169)
T cd04114 54 EKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEES---FR---CLPEWLREIEQYANNKVI-TILVGNKIDLAE 126 (169)
T ss_pred EEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECccccc
Confidence 557889999999998888888899999999999987531 10 1122222222 23677 789999999832
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. ......... +.+.. ..+++++||++|.|+.++++
T Consensus 127 ~~---~i~~~~~~~----~~~~~-----~~~~~~~Sa~~~~gv~~l~~ 162 (169)
T cd04114 127 RR---EVSQQRAEE----FSDAQ-----DMYYLETSAKESDNVEKLFL 162 (169)
T ss_pred cc---ccCHHHHHH----HHHHc-----CCeEEEeeCCCCCCHHHHHH
Confidence 11 111111122 22111 35799999999999998643
No 152
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.64 E-value=3.2e-15 Score=139.23 Aligned_cols=153 Identities=17% Similarity=0.189 Sum_probs=96.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
++..+|+++|..++|||||+.+|.. +.... .....|.+ ...++..+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~--~~~~~----------------------------~~pt~g~~----~~~~~~~~ 60 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIVT----------------------------TIPTIGFN----VETVEYKN 60 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHcc--CCCcc----------------------------ccCCccee----EEEEEECC
Confidence 4457899999999999999998832 21100 00011222 22355678
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH----HcCCCeEEEEEeeccCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~----~~~vp~~IvviNK~D~~~~ 236 (514)
..+.|+|+||+++|...+...++.+|++|+|+|+++... + ...++.+.... ..++| ++|+.||+|+...
T Consensus 61 ~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s---~---~~~~~~l~~~l~~~~~~~~p-iilv~NK~Dl~~~ 133 (181)
T PLN00223 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR---V---VEARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHH---H---HHHHHHHHHHhcCHhhCCCC-EEEEEECCCCCCC
Confidence 899999999999998887777889999999999986421 1 11222222221 12567 9999999998432
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. . .+++.+ .+.-..+. ...+.++++||++|+|+.+.++
T Consensus 134 ~-~---~~~~~~----~l~l~~~~-~~~~~~~~~Sa~~g~gv~e~~~ 171 (181)
T PLN00223 134 M-N---AAEITD----KLGLHSLR-QRHWYIQSTCATSGEGLYEGLD 171 (181)
T ss_pred C-C---HHHHHH----HhCccccC-CCceEEEeccCCCCCCHHHHHH
Confidence 1 1 122222 22111111 1234677999999999998643
No 153
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.64 E-value=2.6e-15 Score=136.90 Aligned_cols=149 Identities=15% Similarity=0.165 Sum_probs=93.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeee--EEEEeCCe
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR--AHFETETT 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~--~~~~~~~~ 161 (514)
++|+++|++++|||||+++|+...- . ......+..+... ..+.....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~ 49 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRF--V-----------------------------SKYLPTIGIDYGVKKVSVRNKEV 49 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--C-----------------------------CCCCCccceeEEEEEEEECCeEE
Confidence 4799999999999999999953211 0 0011122222222 22333346
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--------cCCCeEEEEEeeccC
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--------LGVTKLLLVVNKMDD 233 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~--------~~vp~~IvviNK~D~ 233 (514)
.++|+||||++.|...+......+|++|+|+|+++... ++ ...+.+..+.. .+.| ++++.||+|+
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 122 (168)
T cd04119 50 RVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQS---FE---ALDSWLKEMKQEGGPHGNMENIV-VVVCANKIDL 122 (168)
T ss_pred EEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHH---HH---hHHHHHHHHHHhccccccCCCce-EEEEEEchhc
Confidence 78999999999998777777789999999999987522 11 11222222222 2456 9999999998
Q ss_pred CCC-CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 234 HTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 234 ~~~-~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... .-+. .+...+.... ..+++++||++|.|+.++++
T Consensus 123 ~~~~~~~~-------~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 123 TKHRAVSE-------DEGRLWAESK------GFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ccccccCH-------HHHHHHHHHc------CCeEEEEECCCCCCHHHHHH
Confidence 411 1111 1112222332 25799999999999998644
No 154
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.64 E-value=1.4e-15 Score=138.12 Aligned_cols=150 Identities=21% Similarity=0.241 Sum_probs=93.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe-CCeEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETTRF 163 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~-~~~~i 163 (514)
+|+++|.+++|||||+++|.... ... .....|.++ ..+.. ....+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~--~~~----------------------------~~~t~~~~~----~~~~~~~~~~l 46 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAE--LVT----------------------------TIPTVGFNV----EMLQLEKHLSL 46 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC--ccc----------------------------ccCccCcce----EEEEeCCceEE
Confidence 48999999999999999994321 100 000012221 11222 35789
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-H---HcCCCeEEEEEeeccCCCCCch
Q 010278 164 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-K---TLGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 164 ~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~-~---~~~vp~~IvviNK~D~~~~~~~ 239 (514)
.|+||||+..|...+...+..+|++|+|+|+.+... + ......+..+ + ..++| +++++||+|+... ..
T Consensus 47 ~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~-~~ 118 (160)
T cd04156 47 TVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEAR---L---DESQKELKHILKNEHIKGVP-VVLLANKQDLPGA-LT 118 (160)
T ss_pred EEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHH---H---HHHHHHHHHHHhchhhcCCC-EEEEEECcccccC-cC
Confidence 999999999998877777889999999999987531 0 1122222222 1 14678 9999999998422 11
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.+++...+. +.. +.....++++++||++|.|+.++++
T Consensus 119 ---~~~i~~~~~--~~~--~~~~~~~~~~~~Sa~~~~gv~~~~~ 155 (160)
T cd04156 119 ---AEEITRRFK--LKK--YCSDRDWYVQPCSAVTGEGLAEAFR 155 (160)
T ss_pred ---HHHHHHHcC--Ccc--cCCCCcEEEEecccccCCChHHHHH
Confidence 122222221 011 1111246899999999999998543
No 155
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.64 E-value=1.2e-15 Score=124.02 Aligned_cols=81 Identities=32% Similarity=0.479 Sum_probs=76.8
Q ss_pred ceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCC----cEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccce
Q 010278 313 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK----AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDIL 386 (514)
Q Consensus 313 ~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~----~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~ 386 (514)
|+|+|+++| ++.|+|++|+|++|++++||+++++|.+ ..++|++|++++.++++|.|||+|+++|++++..+++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~ 80 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLR 80 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHHcC
Confidence 579999999 6899999999999999999999999984 6899999999999999999999999999999999999
Q ss_pred eeeEEcc
Q 010278 387 SGFVLSS 393 (514)
Q Consensus 387 ~G~vl~~ 393 (514)
+|++||+
T Consensus 81 ~G~vl~~ 87 (87)
T cd03694 81 KGMVLVS 87 (87)
T ss_pred CccEEeC
Confidence 9999984
No 156
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.64 E-value=1.1e-15 Score=157.90 Aligned_cols=157 Identities=18% Similarity=0.140 Sum_probs=98.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
+-...|+|+|.||+|||||+|+|....-. .....+.|.......+.+.+
T Consensus 157 k~iadValVG~PNaGKSTLln~Lt~~k~~-------------------------------vs~~p~TT~~p~~Giv~~~~ 205 (390)
T PRK12298 157 KLLADVGLLGLPNAGKSTFIRAVSAAKPK-------------------------------VADYPFTTLVPNLGVVRVDD 205 (390)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhCCccc-------------------------------ccCCCCCccCcEEEEEEeCC
Confidence 34457999999999999999999432211 12225566666555566654
Q ss_pred -eEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-----cCCCeEEEE
Q 010278 161 -TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLV 227 (514)
Q Consensus 161 -~~i~liDtPGh~~-------f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~-----~~vp~~Ivv 227 (514)
..|.|+||||..+ ....+++.+..+|++++|||+...... +...+....+..+.. .+.| +|+|
T Consensus 206 ~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~---d~~e~~~~l~~eL~~~~~~L~~kP-~IlV 281 (390)
T PRK12298 206 ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGS---DPVENARIIINELEKYSPKLAEKP-RWLV 281 (390)
T ss_pred CcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCccccc---ChHHHHHHHHHHHHhhhhhhcCCC-EEEE
Confidence 4699999999643 344566778899999999998721000 000122233333333 2567 7889
Q ss_pred EeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 228 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 228 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+||+|+.. ...+. +.+..+.+..++ ..+++++||+++.|+.++.+
T Consensus 282 lNKiDl~~----~~el~---~~l~~l~~~~~~----~~~Vi~ISA~tg~GIdeLl~ 326 (390)
T PRK12298 282 FNKIDLLD----EEEAE---ERAKAIVEALGW----EGPVYLISAASGLGVKELCW 326 (390)
T ss_pred EeCCccCC----hHHHH---HHHHHHHHHhCC----CCCEEEEECCCCcCHHHHHH
Confidence 99999832 12222 222233333332 23689999999999998755
No 157
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.63 E-value=1.7e-15 Score=138.21 Aligned_cols=150 Identities=19% Similarity=0.232 Sum_probs=95.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC--e
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~--~ 161 (514)
.+|+++|.+++|||||+++|+...- . .+....++.+.....+..++ .
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~ 52 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEF--N-----------------------------LDSKSTIGVEFATRSIQIDGKTI 52 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--C-----------------------------CCCCCccceEEEEEEEEECCEEE
Confidence 6899999999999999999943211 0 00112222233333344444 5
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCCCc
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~~~~~ 238 (514)
.+.|+||||+++|.......+..+|++|+|+|+.+... ++ ...+.+..+.. .++| +++|.||+|+....
T Consensus 53 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-i~vv~nK~Dl~~~~- 124 (165)
T cd01868 53 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQT---FE---NVERWLKELRDHADSNIV-IMLVGNKSDLRHLR- 124 (165)
T ss_pred EEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECccccccc-
Confidence 68999999999988777777889999999999986422 11 22222333322 2467 89999999984211
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... .++...+.... .++++++||++|.|+.++++
T Consensus 125 -~~~----~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~~ 158 (165)
T cd01868 125 -AVP----TEEAKAFAEKN------GLSFIETSALDGTNVEEAFK 158 (165)
T ss_pred -cCC----HHHHHHHHHHc------CCEEEEEECCCCCCHHHHHH
Confidence 111 11222333322 35799999999999998643
No 158
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=4.1e-15 Score=136.37 Aligned_cols=159 Identities=18% Similarity=0.213 Sum_probs=108.3
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEE
Q 010278 78 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 157 (514)
Q Consensus 78 ~~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~ 157 (514)
..+...+-||++|+.|+|||||+|+|....+.. . .....|.|+.+.++.+.
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LA-----------------------r------tSktPGrTq~iNff~~~ 69 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLA-----------------------R------TSKTPGRTQLINFFEVD 69 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhCCccee-----------------------e------cCCCCCccceeEEEEec
Confidence 344566889999999999999999995432210 0 22338999988876654
Q ss_pred eCCeEEEEEeCCCC-------------cchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeE
Q 010278 158 TETTRFTILDAPGH-------------KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKL 224 (514)
Q Consensus 158 ~~~~~i~liDtPGh-------------~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~ 224 (514)
.. +.|+|.||. .+.+...+..-..-..++++||+.++.. ..+++.+..+...++| +
T Consensus 70 ~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~-------~~D~em~~~l~~~~i~-~ 138 (200)
T COG0218 70 DE---LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPK-------DLDREMIEFLLELGIP-V 138 (200)
T ss_pred Cc---EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCc-------HHHHHHHHHHHHcCCC-e
Confidence 32 899999994 1223333333345788999999999954 4688999999999999 8
Q ss_pred EEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 225 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 225 IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+|++||+|.... .........+...+ ++.+.....++..|+.++.|++++..
T Consensus 139 ~vv~tK~DKi~~----~~~~k~l~~v~~~l---~~~~~~~~~~~~~ss~~k~Gi~~l~~ 190 (200)
T COG0218 139 IVVLTKADKLKK----SERNKQLNKVAEEL---KKPPPDDQWVVLFSSLKKKGIDELKA 190 (200)
T ss_pred EEEEEccccCCh----hHHHHHHHHHHHHh---cCCCCccceEEEEecccccCHHHHHH
Confidence 999999999432 22333333333222 22211122278889999999988643
No 159
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.63 E-value=3.3e-15 Score=136.05 Aligned_cols=148 Identities=20% Similarity=0.229 Sum_probs=92.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
+|+++|..++|||||+.+|. .+.... . ...-|..+ ..+......+.
T Consensus 2 kv~~~G~~~~GKTsli~~l~--~~~~~~-------------------------~---~pt~g~~~----~~~~~~~~~~~ 47 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLK--LGEIVT-------------------------T---IPTIGFNV----ETVEYKNISFT 47 (159)
T ss_pred EEEEECCCCCCHHHHHHHHh--cCCCcc-------------------------c---CCCCCcce----EEEEECCEEEE
Confidence 69999999999999999983 221100 0 00012211 23445678899
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCCCchH
Q 010278 165 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 165 liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~~~~~ 240 (514)
|+||||+.+|........+.+|++|+|+|++.... + .+..+.+..+.. .+.| ++++.||+|+.... .
T Consensus 48 l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~- 118 (159)
T cd04150 48 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---I---GEAREELQRMLNEDELRDAV-LLVFANKQDLPNAM-S- 118 (159)
T ss_pred EEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhcHHhcCCC-EEEEEECCCCCCCC-C-
Confidence 99999999998877777899999999999976321 1 123333322221 2466 99999999984321 1
Q ss_pred HHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 241 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 241 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
.+++...+. +... . ...+.++++||++|.|+.+++
T Consensus 119 --~~~i~~~~~--~~~~--~-~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 119 --AAEVTDKLG--LHSL--R-NRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred --HHHHHHHhC--cccc--C-CCCEEEEEeeCCCCCCHHHHH
Confidence 112222220 1111 1 124578899999999999853
No 160
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.63 E-value=2.1e-15 Score=137.94 Aligned_cols=152 Identities=17% Similarity=0.188 Sum_probs=94.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
.+|+++|.+|+|||||+++|... ..... + ....|++..............+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~--~~~~~--------------------~-------~~t~~~~~~~~~~~~~~~~~~~ 52 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADD--SFTSA--------------------F-------VSTVGIDFKVKTVFRNDKRVKL 52 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC--CCCCC--------------------C-------CCceeeEEEEEEEEECCEEEEE
Confidence 57999999999999999999432 11000 0 0001222222122122223678
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCCchH
Q 010278 164 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 164 ~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK~D~~~~~~~~ 240 (514)
.|+||||+++|.......++.+|++++|+|...... ++ +..+.+..+... +.| ++++.||+|+.... .
T Consensus 53 ~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~--~ 123 (165)
T cd01865 53 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES---FN---AVQDWSTQIKTYSWDNAQ-VILVGNKCDMEDER--V 123 (165)
T ss_pred EEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCC-EEEEEECcccCccc--c
Confidence 999999999998888888899999999999876421 11 233333334332 456 99999999983221 1
Q ss_pred HHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 241 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 241 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. .++...+.+.++ ++++++||++|.|+.++++
T Consensus 124 ~~----~~~~~~~~~~~~------~~~~~~Sa~~~~gv~~l~~ 156 (165)
T cd01865 124 VS----SERGRQLADQLG------FEFFEASAKENINVKQVFE 156 (165)
T ss_pred cC----HHHHHHHHHHcC------CEEEEEECCCCCCHHHHHH
Confidence 00 112222233333 4799999999999998644
No 161
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.63 E-value=3.6e-15 Score=136.44 Aligned_cols=150 Identities=17% Similarity=0.138 Sum_probs=93.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
.+|+++|.+|+|||||+++++. +...... . ..-+.+. .....+......+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~--~~f~~~~--------------------------~-~t~~~~~-~~~~~~~~~~~~l 51 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVK--GTFRESY--------------------------I-PTIEDTY-RQVISCSKNICTL 51 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCCCc--------------------------C-CcchheE-EEEEEECCEEEEE
Confidence 5799999999999999999853 2211000 0 0000011 1112233345678
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH------cCCCeEEEEEeeccCCCC-
Q 010278 164 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDDHTV- 236 (514)
Q Consensus 164 ~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~------~~vp~~IvviNK~D~~~~- 236 (514)
.|+||||+++|..........+|++|+|+|.+.... + ......+..++. .++| +++|.||+|+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~ 124 (165)
T cd04140 52 QITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQS---L---EELKPIYELICEIKGNNIEKIP-IMLVGNKCDESHKR 124 (165)
T ss_pred EEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhcCCCCCCC-EEEEEECccccccC
Confidence 999999999998777777789999999999987532 1 122333333333 3578 8999999998431
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.... .+...+.... .++++++||++|.|+.++++
T Consensus 125 ~v~~-------~~~~~~~~~~------~~~~~e~SA~~g~~v~~~f~ 158 (165)
T cd04140 125 EVSS-------NEGAACATEW------NCAFMETSAKTNHNVQELFQ 158 (165)
T ss_pred eecH-------HHHHHHHHHh------CCcEEEeecCCCCCHHHHHH
Confidence 1111 1111122222 35799999999999998643
No 162
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.63 E-value=1.6e-15 Score=160.35 Aligned_cols=142 Identities=20% Similarity=0.226 Sum_probs=100.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
..++|+++|++|+|||||+|+|+.....+ .....|.|.+.....+.+++.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~------------------------------v~~~~gtT~d~~~~~i~~~g~ 263 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAI------------------------------VTDIAGTTRDVIEEHINLDGI 263 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcc------------------------------cCCCCCcccccEEEEEEECCe
Confidence 45799999999999999999995422111 122367788877777888899
Q ss_pred EEEEEeCCCCcchH--------HHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 162 RFTILDAPGHKSYV--------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 162 ~i~liDtPGh~~f~--------~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
.+.|+||||++++. ..+...+..+|++|+|+|++++.. .+..+.+.. ..+.| +++|+||+|+
T Consensus 264 ~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s-------~~~~~~l~~--~~~~p-iiiV~NK~DL 333 (449)
T PRK05291 264 PLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLT-------EEDDEILEE--LKDKP-VIVVLNKADL 333 (449)
T ss_pred EEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCC-------hhHHHHHHh--cCCCC-cEEEEEhhhc
Confidence 99999999987653 223445778999999999987632 122222222 34677 8999999999
Q ss_pred CCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 234 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 234 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.... . .. .. ...+++++||++|.|+.++.+
T Consensus 334 ~~~~--~--~~----------~~------~~~~~i~iSAktg~GI~~L~~ 363 (449)
T PRK05291 334 TGEI--D--LE----------EE------NGKPVIRISAKTGEGIDELRE 363 (449)
T ss_pred cccc--h--hh----------hc------cCCceEEEEeeCCCCHHHHHH
Confidence 4211 1 00 11 135789999999999998654
No 163
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.63 E-value=6.2e-15 Score=135.33 Aligned_cols=151 Identities=15% Similarity=0.177 Sum_probs=95.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC--
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 159 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~-- 159 (514)
..++|+++|.+++|||||+++++. +.... .....++.+.....+..+
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 52 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVT--NKFDT-----------------------------QLFHTIGVEFLNKDLEVDGH 52 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHc--CCCCc-----------------------------CcCCceeeEEEEEEEEECCe
Confidence 458999999999999999999843 21110 001112222222233333
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-H------HcCCCeEEEEEeecc
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-K------TLGVTKLLLVVNKMD 232 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~-~------~~~vp~~IvviNK~D 232 (514)
...+.|+||||+++|.......++.+|++|+|+|.+.... ++ ...+.+..+ . ..++| ++++.||+|
T Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 125 (170)
T cd04116 53 FVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQS---FQ---NLSNWKKEFIYYADVKEPESFP-FVVLGNKND 125 (170)
T ss_pred EEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHH---HH---hHHHHHHHHHHhcccccCCCCc-EEEEEECcc
Confidence 3567889999999998877777889999999999887532 11 111111111 1 13577 899999999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
+...... .+++..++++.++ .+++++||++|.|+.+++
T Consensus 126 l~~~~~~-------~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~~ 163 (170)
T cd04116 126 IPERQVS-------TEEAQAWCRENGD-----YPYFETSAKDATNVAAAF 163 (170)
T ss_pred ccccccC-------HHHHHHHHHHCCC-----CeEEEEECCCCCCHHHHH
Confidence 8421111 1233334444432 479999999999998863
No 164
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.63 E-value=6.1e-15 Score=136.66 Aligned_cols=151 Identities=15% Similarity=0.163 Sum_probs=95.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe---
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--- 158 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~--- 158 (514)
..++|+++|..++|||||+++|... .... .....+..+.....+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~--~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 51 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDN--KFNP-----------------------------KFITTVGIDFREKRVVYNSS 51 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC--CCCc-----------------------------cCCCccceEEEEEEEEEcCc
Confidence 3478999999999999999998432 1110 00011111221111211
Q ss_pred ---------CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc----CCCeEE
Q 010278 159 ---------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLL 225 (514)
Q Consensus 159 ---------~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~----~vp~~I 225 (514)
....+.|+||||+++|.......++.+|++|+|+|+++... |. .....+..+... +.| ++
T Consensus 52 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-ii 124 (180)
T cd04127 52 GPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQS---FL---NVRNWMSQLQTHAYCENPD-IV 124 (180)
T ss_pred cccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EE
Confidence 23678999999999998887777899999999999986421 11 122222233332 456 89
Q ss_pred EEEeeccCCCC-CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 226 LVVNKMDDHTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 226 vviNK~D~~~~-~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+|.||+|+... ..+. ++...+.+..+ ++++++||++|.|+.++++
T Consensus 125 iv~nK~Dl~~~~~v~~-------~~~~~~~~~~~------~~~~e~Sak~~~~v~~l~~ 170 (180)
T cd04127 125 LCGNKADLEDQRQVSE-------EQAKALADKYG------IPYFETSAATGTNVEKAVE 170 (180)
T ss_pred EEEeCccchhcCccCH-------HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 99999998421 1111 22333334333 5799999999999998754
No 165
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=4.9e-15 Score=132.84 Aligned_cols=161 Identities=16% Similarity=0.163 Sum_probs=116.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
......|++.|..++||||++.++.+......... + ++ +. ....|..|+...+..+...
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~-----------~-~~-------~s--~k~kr~tTva~D~g~~~~~ 65 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEAD-----------A-SS-------VS--GKGKRPTTVAMDFGSIELD 65 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeecc-----------c-cc-------cc--cccccceeEeecccceEEc
Confidence 44567899999999999999999965543221100 0 00 00 0013458888888888877
Q ss_pred C-eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcC-CCeEEEEEeeccCCCCC
Q 010278 160 T-TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG-VTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 160 ~-~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~-vp~~IvviNK~D~~~~~ 237 (514)
+ +.+.|+|||||++|-.++.-.++.++.+|++||++.+.. ...++.+..+...+ +| ++|++||.|+..+
T Consensus 66 ~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~-------~~a~~ii~f~~~~~~ip-~vVa~NK~DL~~a- 136 (187)
T COG2229 66 EDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPIT-------FHAEEIIDFLTSRNPIP-VVVAINKQDLFDA- 136 (187)
T ss_pred CcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcc-------hHHHHHHHHHhhccCCC-EEEEeeccccCCC-
Confidence 6 899999999999999888888899999999999998732 12366777777777 77 9999999999654
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
|+.+.+.+.. +... ..+|+|+++|..+++..+.
T Consensus 137 ~ppe~i~e~l-------~~~~----~~~~vi~~~a~e~~~~~~~ 169 (187)
T COG2229 137 LPPEKIREAL-------KLEL----LSVPVIEIDATEGEGARDQ 169 (187)
T ss_pred CCHHHHHHHH-------Hhcc----CCCceeeeecccchhHHHH
Confidence 4554444333 2211 1579999999999998774
No 166
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.63 E-value=2.5e-15 Score=141.11 Aligned_cols=151 Identities=17% Similarity=0.170 Sum_probs=93.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC--Ce
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~--~~ 161 (514)
.+|+++|.+|+|||||+++|........ +....+..+.....+..+ ..
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~------------------------------~~~~t~~~~~~~~~~~~~~~~~ 50 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNG------------------------------NFIATVGIDFRNKVVTVDGVKV 50 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcc------------------------------CcCCcccceeEEEEEEECCEEE
Confidence 3699999999999999999843211100 000111112211122223 35
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCCc
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK~D~~~~~~ 238 (514)
.+.|+||||+.+|.......+..+|++|+|+|++.... ++ +....+..+..+ ++| +++|+||+|+....
T Consensus 51 ~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~- 122 (191)
T cd04112 51 KLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKAS---FD---NIRAWLTEIKEYAQEDVV-IMLLGNKADMSGER- 122 (191)
T ss_pred EEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCc-EEEEEEcccchhcc-
Confidence 78999999999998777777888999999999986421 11 223333334333 577 89999999983211
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. ....+...+.+.. .++++++||++|.|+.+++.
T Consensus 123 -~----~~~~~~~~l~~~~------~~~~~e~Sa~~~~~v~~l~~ 156 (191)
T cd04112 123 -V----VKREDGERLAKEY------GVPFMETSAKTGLNVELAFT 156 (191)
T ss_pred -c----cCHHHHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 0 0011222233333 25899999999999998644
No 167
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.63 E-value=3e-15 Score=136.59 Aligned_cols=148 Identities=21% Similarity=0.184 Sum_probs=93.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC--Ce
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~--~~ 161 (514)
.+|+++|.+|+|||||+++++. |..... ....+.+.-...+... ..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~--~~~~~~------------------------------~~~t~~~~~~~~~~~~~~~~ 49 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQ--GIFVEK------------------------------YDPTIEDSYRKQVEVDGQQC 49 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHh--CCCCcc------------------------------cCCcchheEEEEEEECCEEE
Confidence 5799999999999999999852 221110 0011111111223334 45
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH----HcCCCeEEEEEeeccCCCCC
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~----~~~vp~~IvviNK~D~~~~~ 237 (514)
.+.|+||||+++|...+...++.+|++|+|+|.+.... |+ ...+.+..+. ..++| ++++.||+|+....
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~ 122 (164)
T cd04175 50 MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQST---FN---DLQDLREQILRVKDTEDVP-MILVGNKCDLEDER 122 (164)
T ss_pred EEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECCcchhcc
Confidence 67899999999998888888899999999999876421 11 1222222222 23578 99999999984211
Q ss_pred -chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 238 -WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 -~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.+.. +...+.+.+ .++++++||++|.|+.+++.
T Consensus 123 ~~~~~-------~~~~~~~~~------~~~~~~~Sa~~~~~v~~~~~ 156 (164)
T cd04175 123 VVGKE-------QGQNLARQW------GCAFLETSAKAKINVNEIFY 156 (164)
T ss_pred EEcHH-------HHHHHHHHh------CCEEEEeeCCCCCCHHHHHH
Confidence 1111 122223333 25899999999999998643
No 168
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.62 E-value=2e-15 Score=141.41 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=97.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+..+|+++|+.|+|||||+++|.. +.... ...|+......+...+
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~--~~~~~--------------------------------~~~T~~~~~~~i~~~~ 62 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKD--DRLAQ--------------------------------HVPTLHPTSEELTIGN 62 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc--CCCcc--------------------------------cCCccCcceEEEEECC
Confidence 4568899999999999999999842 11100 0012222223455677
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH----HcCCCeEEEEEeeccCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~----~~~vp~~IvviNK~D~~~~ 236 (514)
..+.++|+||+..|.......+..+|++++|+|+.+... + ....+.+..+. ..+.| ++|++||+|+...
T Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-vivv~NK~Dl~~~ 135 (190)
T cd00879 63 IKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPER---F---QESKEELDSLLSDEELANVP-FLILGNKIDLPGA 135 (190)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHH---H---HHHHHHHHHHHcCccccCCC-EEEEEeCCCCCCC
Confidence 889999999999988777777789999999999976411 1 11222222222 24578 8999999998432
Q ss_pred CchHHHHHHHHhhhhhhhhhccC----------cccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGY----------NVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~----------~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. +. +++.+ +++.... .....++++++||++|.|+.++++
T Consensus 136 ~-~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~ 184 (190)
T cd00879 136 V-SE---EELRQ----ALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFR 184 (190)
T ss_pred c-CH---HHHHH----HhCcccccccccccccccCceeEEEEEeEecCCCChHHHHH
Confidence 1 11 22222 2221110 001236799999999999998643
No 169
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.62 E-value=4.9e-15 Score=140.29 Aligned_cols=151 Identities=18% Similarity=0.205 Sum_probs=95.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe---CC
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET---ET 160 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~---~~ 160 (514)
++|+++|.+++|||||+++|+.. .... ....-+..+.....+.. ..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~--~~~~-----------------------------~~~~t~~~d~~~~~v~~~~~~~ 49 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHG--IFSQ-----------------------------HYKATIGVDFALKVIEWDPNTV 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC--CCCC-----------------------------CCCCceeEEEEEEEEEECCCCE
Confidence 36999999999999999998532 1110 00011112222222333 34
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-------HcCCCeEEEEEeeccC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-------TLGVTKLLLVVNKMDD 233 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~-------~~~vp~~IvviNK~D~ 233 (514)
..+.|+||||+++|...+...++.+|++|+|+|.+.... |+ ...+.+..+. ..++| +|+|.||+|+
T Consensus 50 ~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s---~~---~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~Dl 122 (201)
T cd04107 50 VRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPST---FE---AVLKWKADLDSKVTLPNGEPIP-CLLLANKCDL 122 (201)
T ss_pred EEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhcccCCCCCc-EEEEEECCCc
Confidence 678999999999998777777889999999999886421 11 1111111111 13577 8999999998
Q ss_pred CCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 234 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 234 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.... ....+++..+.+..++ .+++++||++|.|+.++++
T Consensus 123 ~~~~------~~~~~~~~~~~~~~~~-----~~~~e~Sak~~~~v~e~f~ 161 (201)
T cd04107 123 KKRL------AKDGEQMDQFCKENGF-----IGWFETSAKEGINIEEAMR 161 (201)
T ss_pred cccc------ccCHHHHHHHHHHcCC-----ceEEEEeCCCCCCHHHHHH
Confidence 4211 0112234444454442 4799999999999999755
No 170
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.62 E-value=1.8e-15 Score=154.59 Aligned_cols=145 Identities=19% Similarity=0.184 Sum_probs=93.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe-CC
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ET 160 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~-~~ 160 (514)
..+.|+++|++|+|||||+|+|..... + .....+.|.+.....+.. ++
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~-~------------------------------v~~~~~tT~d~~~~~i~~~~~ 236 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADV-Y------------------------------AADQLFATLDPTTRRLDLPDG 236 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCce-e------------------------------eccCCccccCCEEEEEEeCCC
Confidence 458999999999999999999953211 0 111235566655555666 46
Q ss_pred eEEEEEeCCCC-cch-------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEe
Q 010278 161 TRFTILDAPGH-KSY-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVN 229 (514)
Q Consensus 161 ~~i~liDtPGh-~~f-------~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviN 229 (514)
..+.|+||||. ++. .+.+...+..||++|+|+|++++... .+.......+..+ +.| +|+|+|
T Consensus 237 ~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~------~~~~~~~~~L~~l~~~~~p-iIlV~N 309 (351)
T TIGR03156 237 GEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDRE------EQIEAVEKVLEELGAEDIP-QLLVYN 309 (351)
T ss_pred ceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchH------HHHHHHHHHHHHhccCCCC-EEEEEE
Confidence 79999999997 221 22344457899999999999876321 1222222334443 567 899999
Q ss_pred eccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 230 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 230 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
|+|+. +. ..... ... + ..+++++||++|.|+.++.
T Consensus 310 K~Dl~--~~--~~v~~-------~~~--~-----~~~~i~iSAktg~GI~eL~ 344 (351)
T TIGR03156 310 KIDLL--DE--PRIER-------LEE--G-----YPEAVFVSAKTGEGLDLLL 344 (351)
T ss_pred eecCC--Ch--HhHHH-------HHh--C-----CCCEEEEEccCCCCHHHHH
Confidence 99983 21 11111 111 1 1368999999999999854
No 171
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=4.3e-15 Score=150.69 Aligned_cols=154 Identities=16% Similarity=0.117 Sum_probs=98.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe-
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 158 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~- 158 (514)
-+-...|+++|.||||||||+++|...... .....+.|.......+.+
T Consensus 155 lk~~adVglVG~PNaGKSTLln~ls~a~~~-------------------------------va~ypfTT~~p~~G~v~~~ 203 (335)
T PRK12299 155 LKLLADVGLVGLPNAGKSTLISAVSAAKPK-------------------------------IADYPFTTLHPNLGVVRVD 203 (335)
T ss_pred EcccCCEEEEcCCCCCHHHHHHHHHcCCCc-------------------------------cCCCCCceeCceEEEEEeC
Confidence 345678999999999999999999432111 111245566665556666
Q ss_pred CCeEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-----cCCCeEEE
Q 010278 159 ETTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLL 226 (514)
Q Consensus 159 ~~~~i~liDtPGh~~-------f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~-----~~vp~~Iv 226 (514)
+...|+|+|+||..+ +....++.+..+|++|+|||++.... + .+.......+.. .+.| +|+
T Consensus 204 ~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s---~---e~~~~~~~EL~~~~~~L~~kp-~II 276 (335)
T PRK12299 204 DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDP---V---EDYKTIRNELEKYSPELADKP-RIL 276 (335)
T ss_pred CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCC---H---HHHHHHHHHHHHhhhhcccCC-eEE
Confidence 557899999999632 34555667788999999999986421 1 012222222222 3567 889
Q ss_pred EEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 227 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 227 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|+||+|+.... .... ..+..+++.. ..+++++||++|+|+.++++
T Consensus 277 V~NKiDL~~~~---~~~~---~~~~~~~~~~------~~~i~~iSAktg~GI~eL~~ 321 (335)
T PRK12299 277 VLNKIDLLDEE---EERE---KRAALELAAL------GGPVFLISAVTGEGLDELLR 321 (335)
T ss_pred EEECcccCCch---hHHH---HHHHHHHHhc------CCCEEEEEcCCCCCHHHHHH
Confidence 99999984321 1111 1122222222 25799999999999998754
No 172
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.62 E-value=1.6e-15 Score=123.55 Aligned_cols=83 Identities=33% Similarity=0.548 Sum_probs=77.6
Q ss_pred ceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecC--CcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceee
Q 010278 313 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 388 (514)
Q Consensus 313 ~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~--~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G 388 (514)
|+|+|+++| ++.|++++|+|.+|++++||++.++|. +..++|++|+++++++++|.|||+|+++|++++..++.+|
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~rG 80 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVERG 80 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcCCc
Confidence 689999999 578999999999999999999999986 5789999999999999999999999999999999999999
Q ss_pred eEEccCC
Q 010278 389 FVLSSVA 395 (514)
Q Consensus 389 ~vl~~~~ 395 (514)
++|++++
T Consensus 81 ~vl~~~~ 87 (87)
T cd03697 81 MVLAKPG 87 (87)
T ss_pred cEEecCC
Confidence 9999863
No 173
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.62 E-value=2e-15 Score=136.74 Aligned_cols=148 Identities=18% Similarity=0.160 Sum_probs=95.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
+|+++|++++|||||+++|..... .. ....-|++ ...+......+.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~~----------------------------~~~t~~~~----~~~~~~~~~~~~ 46 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--VT----------------------------TIPTIGFN----VETVEYKNVSFT 46 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--CC----------------------------CCCCcCcc----eEEEEECCEEEE
Confidence 489999999999999999954320 00 00011222 233555678999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH----HcCCCeEEEEEeeccCCCCCchH
Q 010278 165 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 165 liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~----~~~vp~~IvviNK~D~~~~~~~~ 240 (514)
|+|+||+..|.......+..+|++++|+|+..+.. + .+....+..+. ..+.| +++++||+|+....
T Consensus 47 i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~--- 116 (158)
T cd00878 47 VWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRER---I---EEAKEELHKLLNEEELKGVP-LLIFANKQDLPGAL--- 116 (158)
T ss_pred EEECCCChhhHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCcccCCCc-EEEEeeccCCcccc---
Confidence 99999999987777777789999999999987521 0 12233332222 24677 99999999984321
Q ss_pred HHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 241 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 241 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
..+++.+.+.... .. ...++++++||++|.|+.+++
T Consensus 117 -~~~~~~~~~~~~~----~~-~~~~~~~~~Sa~~~~gv~~~~ 152 (158)
T cd00878 117 -SVSELIEKLGLEK----IL-GRRWHIQPCSAVTGDGLDEGL 152 (158)
T ss_pred -CHHHHHHhhChhh----cc-CCcEEEEEeeCCCCCCHHHHH
Confidence 1223333322111 11 125789999999999999853
No 174
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.62 E-value=2.4e-15 Score=132.08 Aligned_cols=132 Identities=19% Similarity=0.255 Sum_probs=94.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
.+|.++|.++||||||+.+|..... .-..|+.+. +.=
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~-----------------------------------~~~KTq~i~--------~~~ 38 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI-----------------------------------RYKKTQAIE--------YYD 38 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC-----------------------------------CcCccceeE--------ecc
Confidence 3789999999999999999933211 112233221 112
Q ss_pred EEEeCCC----CcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010278 164 TILDAPG----HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 164 ~liDtPG----h~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~ 239 (514)
.+||||| +..|.+..+..+..||++++|.||+... ...--..+..++.| +|-||||+|++. +
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~----------~~~pP~fa~~f~~p-vIGVITK~Dl~~---~ 104 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPR----------SVFPPGFASMFNKP-VIGVITKIDLPS---D 104 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCC----------ccCCchhhcccCCC-EEEEEECccCcc---c
Confidence 4699999 6677888888888999999999999752 22223455667778 999999999941 1
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
..+. +...++|+..|+. .++++|+.+|+|+++|
T Consensus 105 ~~~i----~~a~~~L~~aG~~-----~if~vS~~~~eGi~eL 137 (143)
T PF10662_consen 105 DANI----ERAKKWLKNAGVK-----EIFEVSAVTGEGIEEL 137 (143)
T ss_pred hhhH----HHHHHHHHHcCCC-----CeEEEECCCCcCHHHH
Confidence 2333 3445567778875 4699999999999984
No 175
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.62 E-value=2e-15 Score=138.19 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=94.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
.+|+++|+.++|||||+++|.. +..... .....|.+.......+......+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~--~~~~~~---------------------------~~~t~~~~~~~~~~~~~~~~~~l 53 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTE--KKFMAD---------------------------CPHTIGVEFGTRIIEVNGQKIKL 53 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhc--CCCCCC---------------------------CCcccceeEEEEEEEECCEEEEE
Confidence 6899999999999999999842 221110 00001222222222222234578
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCCchH
Q 010278 164 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 164 ~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK~D~~~~~~~~ 240 (514)
.|+||||+++|.......++.+|++|+|+|++.... |+ ...+.+...... +.| ++++.||+|+.... .
T Consensus 54 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl~~~~--~ 124 (166)
T cd04122 54 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---YN---HLSSWLTDARNLTNPNTV-IFLIGNKADLEAQR--D 124 (166)
T ss_pred EEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECccccccc--C
Confidence 999999999998888777899999999999987521 11 222333333322 455 89999999984221 1
Q ss_pred HHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 241 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 241 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
.. .++...+.+.. .++++++||++|.|+.+++
T Consensus 125 ~~----~~~~~~~~~~~------~~~~~e~Sa~~~~~i~e~f 156 (166)
T cd04122 125 VT----YEEAKQFADEN------GLLFLECSAKTGENVEDAF 156 (166)
T ss_pred cC----HHHHHHHHHHc------CCEEEEEECCCCCCHHHHH
Confidence 01 12222333333 3589999999999999864
No 176
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.62 E-value=1.8e-14 Score=138.79 Aligned_cols=165 Identities=20% Similarity=0.239 Sum_probs=114.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcc-cEEEeeeEEEEe
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKG-KTVEVGRAHFET 158 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g-iT~~~~~~~~~~ 158 (514)
..++..|+++|++|+|||||++.|+....... .....| +++ +..
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~-----------------------------~~~~~g~i~i------~~~ 80 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQN-----------------------------ISDIKGPITV------VTG 80 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCc-----------------------------cccccccEEE------Eec
Confidence 45678899999999999999999864321100 001123 221 223
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
.+.+++|+||||+. ..++..+..+|++++|+|+..+.. .++.+.+..+...|+|.+|+++||+|+..
T Consensus 81 ~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~-------~~~~~i~~~l~~~g~p~vi~VvnK~D~~~--- 147 (225)
T cd01882 81 KKRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFE-------METFEFLNILQVHGFPRVMGVLTHLDLFK--- 147 (225)
T ss_pred CCceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCC-------HHHHHHHHHHHHcCCCeEEEEEeccccCC---
Confidence 67889999999964 666777899999999999998743 57888888888899996667999999842
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccC
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEI 304 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~ 304 (514)
....++.+...++..+...-+ ...+++++||++.-.+ +|-++..|+..++.+..
T Consensus 148 ~~~~~~~~~~~l~~~~~~~~~---~~~ki~~iSa~~~~~~---------~~~e~~~~~r~i~~~~~ 201 (225)
T cd01882 148 KNKTLRKTKKRLKHRFWTEVY---QGAKLFYLSGIVHGRY---------PKTEIHNLARFISVMKF 201 (225)
T ss_pred cHHHHHHHHHHHHHHHHHhhC---CCCcEEEEeeccCCCC---------CHHHHHHHHHHHHhCCC
Confidence 233456666666663331112 1469999999876433 45555567777776654
No 177
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.62 E-value=7.9e-15 Score=138.51 Aligned_cols=151 Identities=17% Similarity=0.203 Sum_probs=88.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC--e
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~--~ 161 (514)
.+|+++|.+|+|||||+++++. +.... +....++.+.....+.+++ +
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~--~~f~~-----------------------------~~~pt~~~~~~~~~i~~~~~~~ 49 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLA--QEFPE-----------------------------EYIPTEHRRLYRPAVVLSGRVY 49 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHc--CCCCc-----------------------------ccCCccccccceeEEEECCEEE
Confidence 3799999999999999999843 21110 0001111111111233344 5
Q ss_pred EEEEEeCCCCcchH--------HHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH------HcCCCeEEEE
Q 010278 162 RFTILDAPGHKSYV--------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK------TLGVTKLLLV 227 (514)
Q Consensus 162 ~i~liDtPGh~~f~--------~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~------~~~vp~~Ivv 227 (514)
.+.|+||||+.+|. ......+..+|++|+|+|++.... |+ .....+..+. ..++| +|+|
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S---~~---~~~~~~~~i~~~~~~~~~~~p-iiiv 122 (198)
T cd04142 50 DLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDS---FH---YVKLLRQQILETRPAGNKEPP-IVVV 122 (198)
T ss_pred EEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcccCCCCCC-EEEE
Confidence 78899999987652 113344678999999999987521 10 1111122222 23577 8999
Q ss_pred EeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 228 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 228 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.||+|+...... . .+++..+.++. + .++++++||++|.|+.++++
T Consensus 123 gNK~Dl~~~~~~--~----~~~~~~~~~~~-~----~~~~~e~Sak~g~~v~~lf~ 167 (198)
T cd04142 123 GNKRDQQRHRFA--P----RHVLSVLVRKS-W----KCGYLECSAKYNWHILLLFK 167 (198)
T ss_pred EECccccccccc--c----HHHHHHHHHHh-c----CCcEEEecCCCCCCHHHHHH
Confidence 999999432110 1 11222222221 1 36899999999999999754
No 178
>PLN03118 Rab family protein; Provisional
Probab=99.61 E-value=7.9e-15 Score=139.97 Aligned_cols=154 Identities=18% Similarity=0.191 Sum_probs=96.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
+..++|+++|++++|||||+++|+.. .... .....|.+.......+....
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~--~~~~----------------------------~~~t~~~~~~~~~~~~~~~~ 61 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISS--SVED----------------------------LAPTIGVDFKIKQLTVGGKR 61 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC--CCCC----------------------------cCCCceeEEEEEEEEECCEE
Confidence 34689999999999999999999532 1100 00112222222222232234
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHH-HHHHH----cCCCeEEEEEeeccCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT----LGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l-~~~~~----~~vp~~IvviNK~D~~~ 235 (514)
..+.|+||||+++|.......++.+|++|+|+|+..... |. ...+.+ ..+.. .++| +|+|.||+|+..
T Consensus 62 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~s---f~---~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~~ 134 (211)
T PLN03118 62 LKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRET---FT---NLSDVWGKEVELYSTNQDCV-KMLVGNKVDRES 134 (211)
T ss_pred EEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcCCCCCC-EEEEEECccccc
Confidence 678999999999998888888899999999999987521 10 111111 11221 3567 888999999842
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. ... .++...+.+.. .++++++||++|.|+.++++
T Consensus 135 ~~--~i~----~~~~~~~~~~~------~~~~~e~SAk~~~~v~~l~~ 170 (211)
T PLN03118 135 ER--DVS----REEGMALAKEH------GCLFLECSAKTRENVEQCFE 170 (211)
T ss_pred cC--ccC----HHHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 21 100 11122223332 35799999999999999755
No 179
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.61 E-value=7.5e-15 Score=138.70 Aligned_cols=150 Identities=19% Similarity=0.220 Sum_probs=91.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC--eE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TR 162 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~--~~ 162 (514)
+|+++|+.|+|||||+++|+... .... ....+.......+...+ ..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~~~~~ 48 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDT--FEPK------------------------------YRRTVEEMHRKEYEVGGVSLT 48 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcc------------------------------CCCchhhheeEEEEECCEEEE
Confidence 48999999999999999995421 1100 00011111112233334 57
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCCCc
Q 010278 163 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 163 i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~~~ 238 (514)
+.|+||||+.+|.......+..+|++|+|+|+.+... ++ .....+..+.. .++| +|+++||+|+....
T Consensus 49 l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~- 120 (198)
T cd04147 49 LDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPES---FE---EVERLREEILEVKEDKFVP-IVVVGNKADSLEEE- 120 (198)
T ss_pred EEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EEEEEEcccccccc-
Confidence 8999999999998776677889999999999987521 11 11111122222 4688 89999999984321
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.....+...+ ... ..+ ..+++++||++|.|+.++++
T Consensus 121 ~~v~~~~~~~----~~~-~~~----~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 121 RQVPAKDALS----TVE-LDW----NCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred ccccHHHHHH----HHH-hhc----CCcEEEecCCCCCCHHHHHH
Confidence 1111111111 111 111 35789999999999998654
No 180
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.61 E-value=7.2e-15 Score=137.15 Aligned_cols=154 Identities=18% Similarity=0.189 Sum_probs=98.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+..+|+++|.+|+|||||+++|... .... . ..|.......+...+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~--~~~~----------------------------~----~~t~~~~~~~~~~~~ 60 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKND--RLAQ----------------------------H----QPTQHPTSEELAIGN 60 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcC--CCcc----------------------------c----CCccccceEEEEECC
Confidence 45589999999999999999998431 1100 0 011111223345567
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH----HcCCCeEEEEEeeccCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~----~~~vp~~IvviNK~D~~~~ 236 (514)
..+.++|+||+..+...+...+..+|++|+|+|+.+... + ....+.+..+. ..++| +++++||+|++..
T Consensus 61 ~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~---~---~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~ 133 (184)
T smart00178 61 IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKER---F---AESKRELDALLSDEELATVP-FLILGNKIDAPYA 133 (184)
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHH---H---HHHHHHHHHHHcChhhcCCC-EEEEEeCccccCC
Confidence 899999999999988777777889999999999986421 1 12333333222 24778 9999999998432
Q ss_pred CchHHHHHHHHhhhhhh--hh---hccCcccCCeeEEeecccccccccccc
Q 010278 237 NWSKERYDEIESKMTPF--LK---ASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~--l~---~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
.+. +++.+.+... .. ..+. ....++++||++|.|+.+.+
T Consensus 134 -~~~---~~i~~~l~l~~~~~~~~~~~~---~~~~i~~~Sa~~~~g~~~~~ 177 (184)
T smart00178 134 -ASE---DELRYALGLTNTTGSKGKVGV---RPLEVFMCSVVRRMGYGEGF 177 (184)
T ss_pred -CCH---HHHHHHcCCCcccccccccCC---ceeEEEEeecccCCChHHHH
Confidence 222 2333333210 00 0111 24679999999999999853
No 181
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.61 E-value=7.6e-15 Score=133.33 Aligned_cols=149 Identities=21% Similarity=0.227 Sum_probs=93.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEe--eeEEEEeCCe
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEV--GRAHFETETT 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~--~~~~~~~~~~ 161 (514)
.+|+++|.+|+|||||+++|+... .... ..+.+.+. ....+.....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~--~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 48 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDE--FVED------------------------------YEPTKADSYRKKVVLDGEDV 48 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--Cccc------------------------------cCCcchhhEEEEEEECCEEE
Confidence 379999999999999999995321 1100 00110000 0112222346
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-H---HcCCCeEEEEEeeccCCCCC
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-K---TLGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~-~---~~~vp~~IvviNK~D~~~~~ 237 (514)
.+.|+||||+.+|.......++.+|++++|+|...... +. ...+.+... . ..++| +++|+||+|+....
T Consensus 49 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~ 121 (164)
T cd04139 49 QLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMES---FT---ATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKR 121 (164)
T ss_pred EEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEcccccccc
Confidence 78999999999999888888899999999999876421 10 112222222 2 24788 99999999984310
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.... .+...+.+.++ ++++++||++|.|+.++++
T Consensus 122 --~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 122 --QVSS----EEAANLARQWG------VPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred --ccCH----HHHHHHHHHhC------CeEEEeeCCCCCCHHHHHH
Confidence 0001 11122233332 5899999999999998644
No 182
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.61 E-value=4.5e-15 Score=137.37 Aligned_cols=152 Identities=16% Similarity=0.206 Sum_probs=97.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
..++|+++|..++|||||+.+|.. +.... . -.|+......+.....
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~--~~~~~----------------------------~----~~t~~~~~~~~~~~~~ 57 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKL--GESVT----------------------------T----IPTIGFNVETVTYKNI 57 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhc--CCCCC----------------------------c----CCccccceEEEEECCE
Confidence 458899999999999999999832 21100 0 0111111223445678
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCCC
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~~ 237 (514)
.+.|+||||+.+|.......+..+|++|+|+|++.... + ....+.+..+.. .++| ++|+.||+|+...
T Consensus 58 ~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s---~---~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~- 129 (175)
T smart00177 58 SFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDR---I---DEAREELHRMLNEDELRDAV-ILVFANKQDLPDA- 129 (175)
T ss_pred EEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHH---H---HHHHHHHHHHhhCHhhcCCc-EEEEEeCcCcccC-
Confidence 89999999999998877777899999999999886421 1 133444433322 2467 9999999998432
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.+. +++.+.+.. .. .. ...+.++++||++|.|+.++++
T Consensus 130 ~~~---~~i~~~~~~--~~--~~-~~~~~~~~~Sa~~g~gv~e~~~ 167 (175)
T smart00177 130 MKA---AEITEKLGL--HS--IR-DRNWYIQPTCATSGDGLYEGLT 167 (175)
T ss_pred CCH---HHHHHHhCc--cc--cC-CCcEEEEEeeCCCCCCHHHHHH
Confidence 121 122222210 00 11 1245688999999999998643
No 183
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.61 E-value=9.2e-15 Score=131.46 Aligned_cols=148 Identities=19% Similarity=0.187 Sum_probs=93.9
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEEE
Q 010278 86 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTI 165 (514)
Q Consensus 86 v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~l 165 (514)
|+++|++|+|||||+++|....- .. +... |+......+...+..+.+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~--~~-----------------------------~~~~--t~~~~~~~~~~~~~~~~~ 48 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF--SE-----------------------------DTIP--TVGFNMRKVTKGNVTLKV 48 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC--Cc-----------------------------CccC--CCCcceEEEEECCEEEEE
Confidence 79999999999999999943210 00 0001 111122234456688999
Q ss_pred EeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCCCchHH
Q 010278 166 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWSKE 241 (514)
Q Consensus 166 iDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~~~~~~ 241 (514)
+|+||++.|...+...+..+|++++|+|+..... + .+..+.+..+.. .++| +++++||+|+....
T Consensus 49 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~---- 117 (159)
T cd04159 49 WDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTA---L---EAAKNELHDLLEKPSLEGIP-LLVLGNKNDLPGAL---- 117 (159)
T ss_pred EECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHcChhhcCCC-EEEEEeCccccCCc----
Confidence 9999999998888888899999999999986321 0 123333333322 4678 89999999984321
Q ss_pred HHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 242 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 242 ~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
..+++...+. +.... ...++++++|+++|.|+.+++
T Consensus 118 ~~~~~~~~~~--~~~~~---~~~~~~~~~Sa~~~~gi~~l~ 153 (159)
T cd04159 118 SVDELIEQMN--LKSIT---DREVSCYSISCKEKTNIDIVL 153 (159)
T ss_pred CHHHHHHHhC--ccccc---CCceEEEEEEeccCCChHHHH
Confidence 1112222211 01111 124689999999999998853
No 184
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.61 E-value=5.3e-15 Score=149.89 Aligned_cols=156 Identities=19% Similarity=0.165 Sum_probs=95.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
-+-...|+++|.+|+|||||+++|......+ ..+...|.......+.+.
T Consensus 154 lk~~adV~lvG~pnaGKSTLl~~lt~~~~~v-------------------------------a~y~fTT~~p~ig~v~~~ 202 (329)
T TIGR02729 154 LKLLADVGLVGLPNAGKSTLISAVSAAKPKI-------------------------------ADYPFTTLVPNLGVVRVD 202 (329)
T ss_pred eeccccEEEEcCCCCCHHHHHHHHhcCCccc-------------------------------cCCCCCccCCEEEEEEeC
Confidence 4556789999999999999999994321111 111233444333444555
Q ss_pred C-eEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-----cCCCeEEE
Q 010278 160 T-TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLL 226 (514)
Q Consensus 160 ~-~~i~liDtPGh~~-------f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~-----~~vp~~Iv 226 (514)
+ ..|.|+||||+.+ .....++.+..+|++|+|+|++.......+ .+.......+.. .+.| +++
T Consensus 203 ~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~---e~l~~l~~EL~~~~~~l~~kp-~II 278 (329)
T TIGR02729 203 DGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPI---EDYEIIRNELKKYSPELAEKP-RIV 278 (329)
T ss_pred CceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHH---HHHHHHHHHHHHhhhhhccCC-EEE
Confidence 5 8899999999742 344556667789999999999864110000 011111111221 3567 889
Q ss_pred EEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 227 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 227 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|+||+|+... ...+++.+.+. +.++ .+++++||+++.|+.++++
T Consensus 279 V~NK~DL~~~----~~~~~~~~~l~---~~~~------~~vi~iSAktg~GI~eL~~ 322 (329)
T TIGR02729 279 VLNKIDLLDE----EELAELLKELK---KALG------KPVFPISALTGEGLDELLY 322 (329)
T ss_pred EEeCccCCCh----HHHHHHHHHHH---HHcC------CcEEEEEccCCcCHHHHHH
Confidence 9999998422 22333333322 2222 4799999999999998644
No 185
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.61 E-value=6.3e-15 Score=133.97 Aligned_cols=149 Identities=18% Similarity=0.132 Sum_probs=91.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC--Ce
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~--~~ 161 (514)
.+|+++|.+|+|||||+++++.. ...... ...+.+.-...+..+ ..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~--~~~~~~------------------------------~~t~~~~~~~~~~~~~~~~ 49 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQG--IFVEKY------------------------------DPTIEDSYRKQIEVDGQQC 49 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC--CCCccc------------------------------CCchhhhEEEEEEECCEEE
Confidence 57999999999999999998532 111000 000000001122233 35
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCCC
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~~ 237 (514)
.+.|+||||+++|...+...++.+|++++|+|.+.... |+ .....+..+.. .++| +|++.||+|+...
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~- 121 (163)
T cd04136 50 MLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSS---FN---DLQDLREQILRVKDTENVP-MVLVGNKCDLEDE- 121 (163)
T ss_pred EEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECcccccc-
Confidence 67889999999998777677789999999999876421 11 22222222322 2577 8999999998321
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.... .++...+.+.+ ..+++++||++|.|+.++++
T Consensus 122 -~~~~----~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04136 122 -RVVS----REEGQALARQW------GCPFYETSAKSKINVDEVFA 156 (163)
T ss_pred -ceec----HHHHHHHHHHc------CCeEEEecCCCCCCHHHHHH
Confidence 1101 11122222222 25899999999999998643
No 186
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.61 E-value=6.7e-15 Score=154.74 Aligned_cols=145 Identities=22% Similarity=0.281 Sum_probs=100.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
++.++|+++|++|+|||||+|+|+.....+ .....|.|.+.....+.+++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~ai------------------------------vs~~pgtTrd~~~~~i~~~g 250 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAI------------------------------VSDIKGTTRDVVEGDFELNG 250 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcc------------------------------cCCCCCcEEEEEEEEEEECC
Confidence 456899999999999999999996432221 11237888888888888899
Q ss_pred eEEEEEeCCCCcchHH--------HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010278 161 TRFTILDAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 232 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~--------~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D 232 (514)
..+.|+||||++++.. .....+..+|++|+|+|++.+.. .+.. .+..+...++| +|+|+||+|
T Consensus 251 ~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s-------~~~~-~l~~~~~~~~p-iIlV~NK~D 321 (442)
T TIGR00450 251 ILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLT-------KDDF-LIIDLNKSKKP-FILVLNKID 321 (442)
T ss_pred EEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCC-------hhHH-HHHHHhhCCCC-EEEEEECcc
Confidence 9999999999865432 23445678999999999987632 1222 34444445788 899999999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+... + .+ .+.+.+ ..+++++||++ .|+.++++
T Consensus 322 l~~~--~---~~-------~~~~~~------~~~~~~vSak~-~gI~~~~~ 353 (442)
T TIGR00450 322 LKIN--S---LE-------FFVSSK------VLNSSNLSAKQ-LKIKALVD 353 (442)
T ss_pred CCCc--c---hh-------hhhhhc------CCceEEEEEec-CCHHHHHH
Confidence 8321 1 11 111222 24789999998 57776544
No 187
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.61 E-value=1.2e-14 Score=133.69 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=91.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC--
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 160 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~-- 160 (514)
..+|+++|++|+|||||+++++. +... .+....+..+.....+..++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~--~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~ 50 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCA--GRFP-----------------------------ERTEATIGVDFRERTVEIDGER 50 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh--CCCC-----------------------------CccccceeEEEEEEEEEECCeE
Confidence 57899999999999999999842 2111 01112222233333344444
Q ss_pred eEEEEEeCCCCcchHHH-HHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCC
Q 010278 161 TRFTILDAPGHKSYVPN-MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~-~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~ 235 (514)
..+.|+||||+++|... .....+.+|++|+|+|++.... + ......+..+.. .++| +|++.||+|+..
T Consensus 51 ~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~ 123 (170)
T cd04115 51 IKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMAS---F---HSLPSWIEECEQHSLPNEVP-RILVGNKCDLRE 123 (170)
T ss_pred EEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHH---H---HhHHHHHHHHHHhcCCCCCC-EEEEEECccchh
Confidence 67899999999988643 3444678999999999987532 1 122233333333 2478 899999999832
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccc---ccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM---GLNMKTR 281 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~---G~gi~~l 281 (514)
... .. .++...+.+.. .++++++||++ +.|+.++
T Consensus 124 ~~~---~~---~~~~~~~~~~~------~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 124 QIQ---VP---TDLAQRFADAH------SMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred hcC---CC---HHHHHHHHHHc------CCcEEEEeccCCcCCCCHHHH
Confidence 110 00 11112222222 36899999999 6666664
No 188
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.61 E-value=8.3e-15 Score=132.69 Aligned_cols=149 Identities=17% Similarity=0.186 Sum_probs=92.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe--CCe
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETT 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~--~~~ 161 (514)
.+|+++|.+++|||||+++|+..... . ...+.++.......+.. ...
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 49 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFN--E-----------------------------KHESTTQASFFQKTVNIGGKRI 49 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--C-----------------------------CcCCccceeEEEEEEEECCEEE
Confidence 37999999999999999999532211 0 00011211222222222 234
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCCC-
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN- 237 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~~~~- 237 (514)
.+.++|+||++.|....-..+..+|++++|+|+.++.. + .+....+..+.. .++| +++++||+|+....
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~~~~~ 122 (162)
T cd04123 50 DLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADS---F---QKVKKWIKELKQMRGNNIS-LVIVGNKIDLERQRV 122 (162)
T ss_pred EEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCCe-EEEEEECcccccccC
Confidence 68999999999887777666789999999999987632 1 012222222222 2577 89999999984211
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... +++..+.+.. ..+++++|+++|.|+.++++
T Consensus 123 ~~~-------~~~~~~~~~~------~~~~~~~s~~~~~gi~~~~~ 155 (162)
T cd04123 123 VSK-------SEAEEYAKSV------GAKHFETSAKTGKGIEELFL 155 (162)
T ss_pred CCH-------HHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 111 1222233333 35789999999999998643
No 189
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.60 E-value=5.8e-15 Score=138.48 Aligned_cols=148 Identities=16% Similarity=0.179 Sum_probs=91.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC--eE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TR 162 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~--~~ 162 (514)
+|+++|.+|+|||||+++|+. +...... ...+.+.-...+...+ ..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~--~~f~~~~------------------------------~~t~~~~~~~~~~~~~~~~~ 48 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCL--NHFVETY------------------------------DPTIEDSYRKQVVVDGQPCM 48 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCCCccC------------------------------CCchHhhEEEEEEECCEEEE
Confidence 489999999999999999953 2211100 0000000001122233 45
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH------cCCCeEEEEEeeccCCCC
Q 010278 163 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 163 i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~------~~vp~~IvviNK~D~~~~ 236 (514)
+.|+||||+++|.......++.+|++|+|+|.+.... |+ ...+.+..+.. .++| +|+|.||+|+...
T Consensus 49 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl~~~ 121 (190)
T cd04144 49 LEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRST---FE---RVERFREQIQRVKDESAADVP-IMIVGNKCDKVYE 121 (190)
T ss_pred EEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcccCCCCC-EEEEEEChhcccc
Confidence 8899999999998888888899999999999977532 11 22223332322 3567 8999999998321
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
..... .+...+.+.. +++++++||++|.|+.+++.
T Consensus 122 --~~v~~----~~~~~~~~~~------~~~~~e~SAk~~~~v~~l~~ 156 (190)
T cd04144 122 --REVST----EEGAALARRL------GCEFIEASAKTNVNVERAFY 156 (190)
T ss_pred --CccCH----HHHHHHHHHh------CCEEEEecCCCCCCHHHHHH
Confidence 11011 1122223333 25799999999999998754
No 190
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.60 E-value=3.8e-15 Score=137.08 Aligned_cols=152 Identities=16% Similarity=0.234 Sum_probs=96.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+..+|+++|++|+|||||+++|.... .. ......|+++ ..+...+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~--~~----------------------------~~~~t~g~~~----~~i~~~~ 57 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASED--IS----------------------------HITPTQGFNI----KTVQSDG 57 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCC--Cc----------------------------ccCCCCCcce----EEEEECC
Confidence 346889999999999999999983210 00 0001123322 2345567
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHH----HHHcCCCeEEEEEeeccCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML----AKTLGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~----~~~~~vp~~IvviNK~D~~~~ 236 (514)
..+.++|+||+..|...+...+..+|++++|+|+..... + ......+.. ....++| +++++||+|+...
T Consensus 58 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 130 (173)
T cd04155 58 FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKR---L---EEAGAELVELLEEEKLAGVP-VLVFANKQDLATA 130 (173)
T ss_pred EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhChhhcCCC-EEEEEECCCCccC
Confidence 899999999999988777777889999999999976311 0 122222222 2234688 8999999998432
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
. ..+++.+.+. ...+. ....+++++||++|.|+.+++
T Consensus 131 ~----~~~~i~~~l~----~~~~~-~~~~~~~~~Sa~~~~gi~~~~ 167 (173)
T cd04155 131 A----PAEEIAEALN----LHDLR-DRTWHIQACSAKTGEGLQEGM 167 (173)
T ss_pred C----CHHHHHHHcC----CcccC-CCeEEEEEeECCCCCCHHHHH
Confidence 1 1222322221 11111 123568899999999999853
No 191
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.60 E-value=7.1e-15 Score=138.02 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=93.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC--e
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~--~ 161 (514)
++|+++|.+++|||||+++|+.. ...... .....|.+... ..+..++ .
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~--~~~~~~--------------------------~~~t~~~~~~~--~~~~~~~~~~ 50 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHH--RFLVGP--------------------------YQNTIGAAFVA--KRMVVGERVV 50 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC--CcCCcC--------------------------cccceeeEEEE--EEEEECCEEE
Confidence 47999999999999999999532 111000 00001222211 2233343 4
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCCCch
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~vp~~IvviNK~D~~~~~~~ 239 (514)
.+.|+||||.++|-.........+|++|+|+|.+.... |+ .....+..+... ++| +++|.||+|+......
T Consensus 51 ~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~ 123 (193)
T cd04118 51 TLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSS---FE---RAKFWVKELQNLEEHCK-IYLCGTKSDLIEQDRS 123 (193)
T ss_pred EEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHhcCCCCC-EEEEEEcccccccccc
Confidence 57799999999887666666778999999999976421 10 122333334433 577 9999999998422100
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.... ...++..+.... .++++++||++|.|+.++++
T Consensus 124 ~~~v--~~~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 124 LRQV--DFHDVQDFADEI------KAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred cCcc--CHHHHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 0000 012233333333 25789999999999998755
No 192
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.60 E-value=7.6e-15 Score=134.43 Aligned_cols=153 Identities=20% Similarity=0.234 Sum_probs=93.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
+|+++|+.++|||||+++|.. +...... . ......++.. .+......+.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~--~~~~~~~------------------~--------~~~~~~~~~~---~~~~~~~~~~ 50 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVS--EEFPENV------------------P--------RVLPEITIPA---DVTPERVPTT 50 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHh--CcCCccC------------------C--------CcccceEeee---eecCCeEEEE
Confidence 799999999999999999953 2211000 0 0001112111 1223457899
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHH--cCCCeEEEEEeeccCCCCCchHH
Q 010278 165 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKT--LGVTKLLLVVNKMDDHTVNWSKE 241 (514)
Q Consensus 165 liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~-e~l~~~~~--~~vp~~IvviNK~D~~~~~~~~~ 241 (514)
|+||||+..|...+...+..+|++++|+|++.+.. ++ +.. ..+..++. .++| +++|+||+|+.... ...
T Consensus 51 i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~~---~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~~~~-~~~ 122 (166)
T cd01893 51 IVDTSSRPQDRANLAAEIRKANVICLVYSVDRPST---LE---RIRTKWLPLIRRLGVKVP-IILVGNKSDLRDGS-SQA 122 (166)
T ss_pred EEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEchhccccc-chh
Confidence 99999999887777777889999999999987532 10 111 12233333 3577 99999999994321 111
Q ss_pred HHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 242 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 242 ~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
...+.+..+.+.+.- ..+++++||++|.|+.++++
T Consensus 123 ---~~~~~~~~~~~~~~~----~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 123 ---GLEEEMLPIMNEFRE----IETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ---HHHHHHHHHHHHHhc----ccEEEEeccccccCHHHHHH
Confidence 112222222222210 13799999999999998644
No 193
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.60 E-value=3.9e-15 Score=161.90 Aligned_cols=140 Identities=20% Similarity=0.205 Sum_probs=98.4
Q ss_pred ecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEEEEeCC
Q 010278 90 GHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAP 169 (514)
Q Consensus 90 G~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~liDtP 169 (514)
|++|+|||||+|+|.+..- .....+|+|++.....++++++.++++|||
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-------------------------------~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtP 49 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-------------------------------TVGNWPGVTVEKKEGKLGFQGEDIEIVDLP 49 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-------------------------------eecCCCCeEEEEEEEEEEECCeEEEEEECC
Confidence 8999999999999943210 022348999999888888889999999999
Q ss_pred CCcchHHH-----HHH---hhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHH
Q 010278 170 GHKSYVPN-----MIS---GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 241 (514)
Q Consensus 170 Gh~~f~~~-----~~~---g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~ 241 (514)
|+.+|... +.+ ....+|++++|+|++.. .+..+....+...++| +++|+||+|+....
T Consensus 50 G~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l---------er~l~l~~ql~~~~~P-iIIVlNK~Dl~~~~---- 115 (591)
T TIGR00437 50 GIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL---------ERNLYLTLQLLELGIP-MILALNLVDEAEKK---- 115 (591)
T ss_pred CccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc---------hhhHHHHHHHHhcCCC-EEEEEehhHHHHhC----
Confidence 99887432 111 12478999999999863 1344445556668999 99999999983211
Q ss_pred HHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 242 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 242 ~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... .+.+.+.+.+ +++++++||++|.|++++.+
T Consensus 116 ~i~---~d~~~L~~~l------g~pvv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 116 GIR---IDEEKLEERL------GVPVVPTSATEGRGIERLKD 148 (591)
T ss_pred CCh---hhHHHHHHHc------CCCEEEEECCCCCCHHHHHH
Confidence 111 1122222333 35899999999999998654
No 194
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.60 E-value=7.8e-15 Score=138.80 Aligned_cols=151 Identities=21% Similarity=0.199 Sum_probs=96.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC--e
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~--~ 161 (514)
+.|+++|..++|||||+.++.+ +.... +....++.+.....+..++ .
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~--~~f~~-----------------------------~~~~Ti~~~~~~~~i~~~~~~v 49 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTD--DTFCE-----------------------------ACKSGVGVDFKIKTVELRGKKI 49 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHh--CCCCC-----------------------------cCCCcceeEEEEEEEEECCEEE
Confidence 3689999999999999999843 22111 1112222333333445554 6
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCCCc
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~~~~~ 238 (514)
.+.|+||+|+++|...+...++.+|++|+|+|.++... |+ .....+..+.. .++| +|+|.||+|+.. .
T Consensus 50 ~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~S---f~---~l~~w~~~i~~~~~~~~p-iilVgNK~DL~~--~ 120 (202)
T cd04120 50 RLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET---FD---DLPKWMKMIDKYASEDAE-LLLVGNKLDCET--D 120 (202)
T ss_pred EEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCc-EEEEEECccccc--c
Confidence 78999999999998888777899999999999987532 11 22222333333 2577 899999999832 1
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.+.. ..+...+.++. ..++++.+||++|.|+.+++.
T Consensus 121 ~~v~----~~~~~~~a~~~-----~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 121 REIS----RQQGEKFAQQI-----TGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred cccC----HHHHHHHHHhc-----CCCEEEEecCCCCCCHHHHHH
Confidence 1100 11122222222 135799999999999998754
No 195
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.60 E-value=1.3e-14 Score=150.96 Aligned_cols=153 Identities=22% Similarity=0.227 Sum_probs=96.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
-+-...|+++|.+|+|||||+++|......+ ....+.|.......+.+.
T Consensus 155 lk~~adVglVG~pNaGKSTLLn~Lt~ak~kI-------------------------------a~ypfTTl~PnlG~v~~~ 203 (424)
T PRK12297 155 LKLLADVGLVGFPNVGKSTLLSVVSNAKPKI-------------------------------ANYHFTTLVPNLGVVETD 203 (424)
T ss_pred ecccCcEEEEcCCCCCHHHHHHHHHcCCCcc-------------------------------ccCCcceeceEEEEEEEe
Confidence 3445689999999999999999994322111 112455666555556665
Q ss_pred -CeEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-----cCCCeEEE
Q 010278 160 -TTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLL 226 (514)
Q Consensus 160 -~~~i~liDtPGh~~-------f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~-----~~vp~~Iv 226 (514)
+..|+|+|+||... .....++.+..+|++|+|||++.......+ .+.......+.. .+.| +||
T Consensus 204 ~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~---e~~~~i~~EL~~y~~~L~~kP-~IV 279 (424)
T PRK12297 204 DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPI---EDYEKINKELKLYNPRLLERP-QIV 279 (424)
T ss_pred CCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChH---HHHHHHHHHHhhhchhccCCc-EEE
Confidence 78899999999632 334556667789999999999642100000 011222222322 3677 889
Q ss_pred EEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 227 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 227 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|+||+|+. + ....++. +.+.++ .+++++||++|.|+.++++
T Consensus 280 V~NK~DL~--~-~~e~l~~-------l~~~l~------~~i~~iSA~tgeGI~eL~~ 320 (424)
T PRK12297 280 VANKMDLP--E-AEENLEE-------FKEKLG------PKVFPISALTGQGLDELLY 320 (424)
T ss_pred EEeCCCCc--C-CHHHHHH-------HHHHhC------CcEEEEeCCCCCCHHHHHH
Confidence 99999983 2 1222222 222222 3799999999999999755
No 196
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.60 E-value=1.2e-14 Score=152.86 Aligned_cols=160 Identities=19% Similarity=0.166 Sum_probs=100.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
.-+-...|+++|.+|+|||||+++|....-. .....+.|+......+..
T Consensus 155 eLk~~adV~LVG~PNAGKSTLln~Ls~akpk-------------------------------IadypfTTl~P~lGvv~~ 203 (500)
T PRK12296 155 ELKSVADVGLVGFPSAGKSSLISALSAAKPK-------------------------------IADYPFTTLVPNLGVVQA 203 (500)
T ss_pred EecccceEEEEEcCCCCHHHHHHHHhcCCcc-------------------------------ccccCcccccceEEEEEE
Confidence 3455678999999999999999999432111 112256677766666777
Q ss_pred CCeEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCccc-ccccCCcchHHHH-HHH----------HHc
Q 010278 159 ETTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFE-TGFEKGGQTREHV-MLA----------KTL 219 (514)
Q Consensus 159 ~~~~i~liDtPGh~~-------f~~~~~~g~~~~D~ailVVda~~g~~e-~~~~~~~qt~e~l-~~~----------~~~ 219 (514)
.+..|+|+||||... .....++.+..||++|+|||++..... ..++-.....+.| .+. ...
T Consensus 204 ~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~ 283 (500)
T PRK12296 204 GDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLA 283 (500)
T ss_pred CCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhc
Confidence 888999999999532 123345567789999999999742100 0000000111112 121 223
Q ss_pred CCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 220 GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 220 ~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+.| +|||+||+|++.. .. +.+.+...++..+ ++++++||++|.|+.+++.
T Consensus 284 ~kP-~IVVlNKiDL~da---~e----l~e~l~~~l~~~g------~~Vf~ISA~tgeGLdEL~~ 333 (500)
T PRK12296 284 ERP-RLVVLNKIDVPDA---RE----LAEFVRPELEARG------WPVFEVSAASREGLRELSF 333 (500)
T ss_pred CCC-EEEEEECccchhh---HH----HHHHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 577 8899999998321 11 2222333343333 5799999999999999765
No 197
>PTZ00369 Ras-like protein; Provisional
Probab=99.60 E-value=1.3e-14 Score=136.10 Aligned_cols=153 Identities=20% Similarity=0.145 Sum_probs=94.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
+..+|+++|++++|||||++++++.. ..... . ...|.+. .....+.....
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~--~~~~~----------------------~-----~t~~~~~-~~~~~~~~~~~ 53 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNH--FIDEY----------------------D-----PTIEDSY-RKQCVIDEETC 53 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC--CCcCc----------------------C-----CchhhEE-EEEEEECCEEE
Confidence 34789999999999999999985321 11000 0 0001111 11112233345
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCCC
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~~ 237 (514)
.+.|+||||+++|...+......+|++|+|+|+++... |+ +..+.+..+.. .++| +|++.||+|+....
T Consensus 54 ~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s---~~---~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~ 126 (189)
T PTZ00369 54 LLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSS---FE---EIASFREQILRVKDKDRVP-MILVGNKCDLDSER 126 (189)
T ss_pred EEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccccccc
Confidence 68899999999999888778889999999999987532 11 22222222222 2677 99999999983211
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.-.. .+...+.+.. .++++++||++|.|+.+++.
T Consensus 127 --~i~~----~~~~~~~~~~------~~~~~e~Sak~~~gi~~~~~ 160 (189)
T PTZ00369 127 --QVST----GEGQELAKSF------GIPFLETSAKQRVNVDEAFY 160 (189)
T ss_pred --ccCH----HHHHHHHHHh------CCEEEEeeCCCCCCHHHHHH
Confidence 0001 1122222332 25899999999999998654
No 198
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.60 E-value=1.1e-14 Score=132.67 Aligned_cols=153 Identities=18% Similarity=0.205 Sum_probs=93.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEE-eCCeE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-TETTR 162 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~-~~~~~ 162 (514)
++|+++|.+++|||||+++|.......... .....|..+......+. .....
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~---------------------------~~~t~~~~~~~~~~~~~~~~~~~ 53 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKN---------------------------YLMTTGCDFVVKEVPVDTDNTVE 53 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcc---------------------------CCCceEEEEEEEEEEeCCCCEEE
Confidence 479999999999999999985321111000 00012222222222232 23478
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--cCCCeEEEEEeeccCCCCC-ch
Q 010278 163 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVN-WS 239 (514)
Q Consensus 163 i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~--~~vp~~IvviNK~D~~~~~-~~ 239 (514)
+.++||||++.|...+...+..+|++|+|+|.+.... + ......+..+.. .++| +|+|+||+|+.... .+
T Consensus 54 l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~ 126 (164)
T cd04101 54 LFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKAS---F---ENCSRWVNKVRTASKHMP-GVLVGNKMDLADKAEVT 126 (164)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCC-EEEEEECcccccccCCC
Confidence 9999999999998877777889999999999986421 0 112222333333 3577 89999999983221 01
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... ...+.... .++++++||.+|.|+.++++
T Consensus 127 ~~~-------~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 157 (164)
T cd04101 127 DAQ-------AQAFAQAN------QLKFFKTSALRGVGYEEPFE 157 (164)
T ss_pred HHH-------HHHHHHHc------CCeEEEEeCCCCCChHHHHH
Confidence 111 11111222 35799999999999998643
No 199
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.60 E-value=9.9e-15 Score=136.00 Aligned_cols=153 Identities=19% Similarity=0.218 Sum_probs=96.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
++..+|+++|..++|||||+.++. .+.... .....|..+ ..+...+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~--~~~~~~----------------------------~~~T~~~~~----~~~~~~~ 60 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLK--LGEVVT----------------------------TIPTIGFNV----ETVEYKN 60 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHh--cCCccc----------------------------cCCccccce----EEEEECC
Confidence 345789999999999999999983 221100 000112221 2344577
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-HH---cCCCeEEEEEeeccCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KT---LGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~-~~---~~vp~~IvviNK~D~~~~ 236 (514)
..+.|+||||+++|.......++.+|++|+|+|++.... +. ...+.+... .. ..+| ++++.||.|+...
T Consensus 61 ~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s---~~---~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~ 133 (182)
T PTZ00133 61 LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRER---IG---DAREELERMLSEDELRDAV-LLVFANKQDLPNA 133 (182)
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH---HH---HHHHHHHHHHhCHhhcCCC-EEEEEeCCCCCCC
Confidence 899999999999998877777899999999999975311 11 223233222 21 2466 9999999998432
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. +. +++...+. ...+. ...++++++||++|.|+.++++
T Consensus 134 ~-~~---~~i~~~l~----~~~~~-~~~~~~~~~Sa~tg~gv~e~~~ 171 (182)
T PTZ00133 134 M-ST---TEVTEKLG----LHSVR-QRNWYIQGCCATTAQGLYEGLD 171 (182)
T ss_pred C-CH---HHHHHHhC----CCccc-CCcEEEEeeeCCCCCCHHHHHH
Confidence 1 11 12222221 11111 1245788999999999998654
No 200
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.60 E-value=3.7e-14 Score=135.76 Aligned_cols=150 Identities=15% Similarity=0.129 Sum_probs=94.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC---C
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---T 160 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~---~ 160 (514)
++|+++|.+++|||||+++|... .... ....-++.+.....+... .
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~--~~~~-----------------------------~~~~T~~~d~~~~~i~~~~~~~ 49 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKE--GFGK-----------------------------SYKQTIGLDFFSKRVTLPGNLN 49 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcC--CCCC-----------------------------CCCCceeEEEEEEEEEeCCCCE
Confidence 36899999999999999999432 1110 001112223222233332 4
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc------CCCeEEEEEeeccCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL------GVTKLLLVVNKMDDH 234 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~------~vp~~IvviNK~D~~ 234 (514)
..+.|+||||++.|.......++.+|++|+|+|++.... |+ +..+.+..+... ++| +|+|.||+|+.
T Consensus 50 ~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s---~~---~~~~w~~~l~~~~~~~~~~~p-iilVgNK~DL~ 122 (215)
T cd04109 50 VTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQS---FE---NLEDWYSMVRKVLKSSETQPL-VVLVGNKTDLE 122 (215)
T ss_pred EEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhccccCCCce-EEEEEECcccc
Confidence 678999999999887777777889999999999987421 11 222233333332 234 88999999983
Q ss_pred CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 235 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. .+ ...++...+.+..+ ++++++||++|.|+.++++
T Consensus 123 ~~--~~----v~~~~~~~~~~~~~------~~~~~iSAktg~gv~~lf~ 159 (215)
T cd04109 123 HN--RT----VKDDKHARFAQANG------MESCLVSAKTGDRVNLLFQ 159 (215)
T ss_pred cc--cc----cCHHHHHHHHHHcC------CEEEEEECCCCCCHHHHHH
Confidence 21 10 11122223333332 4789999999999999754
No 201
>PRK11058 GTPase HflX; Provisional
Probab=99.59 E-value=4.7e-15 Score=155.01 Aligned_cols=150 Identities=17% Similarity=0.105 Sum_probs=93.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe-
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT- 161 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~- 161 (514)
.+.|+++|.+|+|||||+|+|...... .....+.|.+.....+.+.+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~-------------------------------v~~~~~tTld~~~~~i~l~~~~ 245 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVY-------------------------------AADQLFATLDPTLRRIDVADVG 245 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcee-------------------------------eccCCCCCcCCceEEEEeCCCC
Confidence 368999999999999999999432111 111245566655555665553
Q ss_pred EEEEEeCCCCcch--------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 162 RFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 162 ~i~liDtPGh~~f--------~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
.+.|+||||..+. +..++..+..||++|+|+|++++.+...+. .+.+.+..+...++| +|+|+||+|+
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~---~v~~iL~el~~~~~p-vIiV~NKiDL 321 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIE---AVNTVLEEIDAHEIP-TLLVMNKIDM 321 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHH---HHHHHHHHhccCCCC-EEEEEEcccC
Confidence 8899999997432 223445568899999999998863210000 012223333334677 8999999998
Q ss_pred CCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 234 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 234 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. +.....+ . . ...++ ..++++||++|.|+.++.+
T Consensus 322 ~--~~~~~~~----~---~--~~~~~-----~~~v~ISAktG~GIdeL~e 355 (426)
T PRK11058 322 L--DDFEPRI----D---R--DEENK-----PIRVWLSAQTGAGIPLLFQ 355 (426)
T ss_pred C--CchhHHH----H---H--HhcCC-----CceEEEeCCCCCCHHHHHH
Confidence 3 2111111 0 0 01121 1258899999999998654
No 202
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.59 E-value=1.1e-14 Score=133.73 Aligned_cols=148 Identities=15% Similarity=0.179 Sum_probs=94.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
+|+++|..++|||||+++|... .... .....|.+ ...+...+..+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~---~~~~---------------------------~~~t~g~~----~~~~~~~~~~~~ 46 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE---IPKK---------------------------VAPTVGFT----PTKLRLDKYEVC 46 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---CCcc---------------------------ccCcccce----EEEEEECCEEEE
Confidence 4899999999999999998421 1100 00012222 234556788999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCCCchH
Q 010278 165 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 165 liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~~~~~ 240 (514)
++|+||+.+|.......+..+|++|+|+|++.... + ......+..+.. .++| +++++||+|+.... +.
T Consensus 47 i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s---~---~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~-~~ 118 (167)
T cd04161 47 IFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDR---V---QEVKEILRELLQHPRVSGKP-ILVLANKQDKKNAL-LG 118 (167)
T ss_pred EEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhH---H---HHHHHHHHHHHcCccccCCc-EEEEEeCCCCcCCC-CH
Confidence 99999999998888888899999999999986421 1 122333333322 3677 99999999994332 11
Q ss_pred HHHHHHHhhh--hhhhhhccCcccCCeeEEeeccccc------cccccc
Q 010278 241 ERYDEIESKM--TPFLKASGYNVKKDVQFLPISGLMG------LNMKTR 281 (514)
Q Consensus 241 ~~~~~i~~~l--~~~l~~~g~~~~~~~~iipiSa~~G------~gi~~l 281 (514)
. ++.+.+ ..+.++.+ ..++++++||++| .|+.+-
T Consensus 119 ~---~i~~~~~l~~~~~~~~----~~~~~~~~Sa~~g~~~~~~~g~~~~ 160 (167)
T cd04161 119 A---DVIEYLSLEKLVNENK----SLCHIEPCSAIEGLGKKIDPSIVEG 160 (167)
T ss_pred H---HHHHhcCcccccCCCC----ceEEEEEeEceeCCCCccccCHHHH
Confidence 1 222221 22221111 1468999999998 677663
No 203
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.59 E-value=9e-15 Score=130.98 Aligned_cols=148 Identities=19% Similarity=0.204 Sum_probs=96.0
Q ss_pred EEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC-CeEEEEE
Q 010278 88 FIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-TTRFTIL 166 (514)
Q Consensus 88 ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~-~~~i~li 166 (514)
++|++|+|||||+++|....... .....+.|.......+... ...+.|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI------------------------------VSPVPGTTTDPVEYVWELGPLGPVVLI 50 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc------------------------------cCCCCCcEECCeEEEEEecCCCcEEEE
Confidence 58999999999999995432110 1122455555555555544 7899999
Q ss_pred eCCCCcchHH-------HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010278 167 DAPGHKSYVP-------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 167 DtPGh~~f~~-------~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~ 239 (514)
||||+..+.. .+...++.+|++++|+|+..+.. ......+......+.| +++++||+|+...+
T Consensus 51 Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~-------~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~-- 120 (163)
T cd00880 51 DTPGIDEAGGLGREREELARRVLERADLILFVVDADLRAD-------EEEEKLLELLRERGKP-VLLVLNKIDLLPEE-- 120 (163)
T ss_pred ECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCe-EEEEEEccccCChh--
Confidence 9999877643 33446789999999999998742 1222235566667888 89999999994322
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
....... ...... .. ....+++++|+.++.|+.++.
T Consensus 121 --~~~~~~~-~~~~~~-~~---~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 121 --EEEELLE-LRLLIL-LL---LLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred --hHHHHHH-HHHhhc-cc---ccCCceEEEeeeccCCHHHHH
Confidence 1111111 001111 11 125789999999999998753
No 204
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.59 E-value=1.1e-14 Score=133.19 Aligned_cols=147 Identities=14% Similarity=0.108 Sum_probs=94.4
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEEE
Q 010278 86 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTI 165 (514)
Q Consensus 86 v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~l 165 (514)
|+++|..++|||||+++|.... .... ...|+......+...+..+.|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~--~~~~-------------------------------~~pt~g~~~~~i~~~~~~l~i 48 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSER--SLES-------------------------------VVPTTGFNSVAIPTQDAIMEL 48 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--Cccc-------------------------------ccccCCcceEEEeeCCeEEEE
Confidence 7899999999999999995321 1000 001111112345567789999
Q ss_pred EeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--cCCCeEEEEEeeccCCCCCchHHHH
Q 010278 166 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWSKERY 243 (514)
Q Consensus 166 iDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~--~~vp~~IvviNK~D~~~~~~~~~~~ 243 (514)
+||||+.+|...+...++.+|++|+|+|+.+... + ...++.+..+.. .++| +++|.||+|+.... ..
T Consensus 49 ~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s---~---~~~~~~l~~~~~~~~~~p-iilv~NK~Dl~~~~----~~ 117 (164)
T cd04162 49 LEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSER---L---PLARQELHQLLQHPPDLP-LVVLANKQDLPAAR----SV 117 (164)
T ss_pred EECCCCcchhHHHHHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCCCCCc-EEEEEeCcCCcCCC----CH
Confidence 9999999998888888899999999999887421 1 122333333322 4677 99999999984321 12
Q ss_pred HHHHhh--hhhhhhhccCcccCCeeEEeecccc------cccccccc
Q 010278 244 DEIESK--MTPFLKASGYNVKKDVQFLPISGLM------GLNMKTRV 282 (514)
Q Consensus 244 ~~i~~~--l~~~l~~~g~~~~~~~~iipiSa~~------G~gi~~l~ 282 (514)
.++.+. +..+.++ ..++++++||++ |+|+.+++
T Consensus 118 ~~i~~~~~~~~~~~~------~~~~~~~~Sa~~~~s~~~~~~v~~~~ 158 (164)
T cd04162 118 QEIHKELELEPIARG------RRWILQGTSLDDDGSPSRMEAVKDLL 158 (164)
T ss_pred HHHHHHhCChhhcCC------CceEEEEeeecCCCChhHHHHHHHHH
Confidence 222222 1222222 246789999888 99988754
No 205
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.59 E-value=1.7e-14 Score=133.50 Aligned_cols=154 Identities=19% Similarity=0.270 Sum_probs=104.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
.++..+|+++|..+||||||+++|. .+.+.. ...|+......+.+.
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~--~~~~~~--------------------------------~~pT~g~~~~~i~~~ 56 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLK--NGEISE--------------------------------TIPTIGFNIEEIKYK 56 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHH--SSSEEE--------------------------------EEEESSEEEEEEEET
T ss_pred cCcEEEEEEECCCccchHHHHHHhh--hccccc--------------------------------cCcccccccceeeeC
Confidence 3678999999999999999999983 221110 112333334556778
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~ 235 (514)
+..++|+|.+|+..+...+-.....+|++|+|||+++..- + .+.++.+..+.. .++| ++|++||.|++.
T Consensus 57 ~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~---l---~e~~~~L~~ll~~~~~~~~p-iLIl~NK~D~~~ 129 (175)
T PF00025_consen 57 GYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPER---L---QEAKEELKELLNDPELKDIP-ILILANKQDLPD 129 (175)
T ss_dssp TEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGG---H---HHHHHHHHHHHTSGGGTTSE-EEEEEESTTSTT
T ss_pred cEEEEEEeccccccccccceeeccccceeEEEEeccccee---e---cccccchhhhcchhhcccce-EEEEeccccccC
Confidence 9999999999999887777777889999999999986420 1 234444433322 2577 999999999854
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
+- +. +++...+. +..+. ....+.++++||.+|+|+.+.+
T Consensus 130 ~~-~~---~~i~~~l~--l~~l~--~~~~~~v~~~sa~~g~Gv~e~l 168 (175)
T PF00025_consen 130 AM-SE---EEIKEYLG--LEKLK--NKRPWSVFSCSAKTGEGVDEGL 168 (175)
T ss_dssp SS-TH---HHHHHHTT--GGGTT--SSSCEEEEEEBTTTTBTHHHHH
T ss_pred cc-hh---hHHHhhhh--hhhcc--cCCceEEEeeeccCCcCHHHHH
Confidence 32 22 23333221 12221 1236889999999999998853
No 206
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.59 E-value=7.8e-15 Score=118.38 Aligned_cols=81 Identities=40% Similarity=0.636 Sum_probs=77.0
Q ss_pred ceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeE
Q 010278 313 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 390 (514)
Q Consensus 313 ~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~v 390 (514)
|+|+|+++| ++.|++++|+|.+|++++||++.++|++...+|++|+.++.++++|.|||.|++.|++++..++++||+
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~~G~v 80 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERGDV 80 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcCCccE
Confidence 689999999 578999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred Ecc
Q 010278 391 LSS 393 (514)
Q Consensus 391 l~~ 393 (514)
|+.
T Consensus 81 l~~ 83 (83)
T cd03696 81 LSS 83 (83)
T ss_pred EcC
Confidence 973
No 207
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.59 E-value=5.1e-15 Score=141.76 Aligned_cols=158 Identities=15% Similarity=0.121 Sum_probs=96.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
++|+++|.+++|||||+++|+. +.... .-.|+........+..+.+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~--~~f~~--------------------------------~~~Tig~~~~~~~~~~~~l 46 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYME--RRFKD--------------------------------TVSTVGGAFYLKQWGPYNI 46 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhc--CCCCC--------------------------------CCCccceEEEEEEeeEEEE
Confidence 4689999999999999999843 21100 0112222222233456789
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCCCchH
Q 010278 164 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 164 ~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~~~~~~~ 240 (514)
.|+||||++.|........+.+|++|+|+|+++... |+ .....+..+.. .++| +|+|.||+|+... +..
T Consensus 47 ~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~S---f~---~l~~~~~~l~~~~~~~~p-iIlVgNK~DL~~~-~~~ 118 (220)
T cd04126 47 SIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQS---LE---ELEDRFLGLTDTANEDCL-FAVVGNKLDLTEE-GAL 118 (220)
T ss_pred EEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEECcccccc-ccc
Confidence 999999999998877777889999999999987421 11 11222222222 2467 8999999998431 000
Q ss_pred --------------HHHHHHHhhhhhhhhhccC--------cccCCeeEEeeccccccccccccc
Q 010278 241 --------------ERYDEIESKMTPFLKASGY--------NVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 241 --------------~~~~~i~~~l~~~l~~~g~--------~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
....-..++...+.++.+. .+...++++.+||++|.|+.+++.
T Consensus 119 ~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~ 183 (220)
T cd04126 119 AGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFE 183 (220)
T ss_pred ccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHH
Confidence 0001111222233333320 111236899999999999999765
No 208
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.59 E-value=1.9e-14 Score=132.59 Aligned_cols=152 Identities=17% Similarity=0.163 Sum_probs=93.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC--CeE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TTR 162 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~--~~~ 162 (514)
.|+++|..++|||||+++++.. .... +....+..+.....+... ...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~--~f~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~ 50 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKD--VFDK-----------------------------NYKATIGVDFEMERFEILGVPFS 50 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCC-----------------------------CCCCceeeEEEEEEEEECCEEEE
Confidence 5899999999999999999532 1110 000111122222233333 357
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCC---CeEEEEEeeccCCCCCch
Q 010278 163 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV---TKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 163 i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~v---p~~IvviNK~D~~~~~~~ 239 (514)
+.|+||||+++|.......++.+|++|+|+|+..... + ....+.+..+..... +.+|+|.||+|+....
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~-- 122 (170)
T cd04108 51 LQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVAS---L---EHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA-- 122 (170)
T ss_pred EEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc--
Confidence 8999999999998887777899999999999976421 1 122333333322221 2388999999983221
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.......+...+.++++ .+++.+||++|.|+.+++.
T Consensus 123 --~~~~~~~~~~~~~~~~~------~~~~e~Sa~~g~~v~~lf~ 158 (170)
T cd04108 123 --QYALMEQDAIKLAAEMQ------AEYWSVSALSGENVREFFF 158 (170)
T ss_pred --cccccHHHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 11111222223333332 4789999999999998654
No 209
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.59 E-value=1.7e-14 Score=132.21 Aligned_cols=148 Identities=18% Similarity=0.267 Sum_probs=91.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe--CCe
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETT 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~--~~~ 161 (514)
.+|+++|..++|||||+++++. +.... .....+..+.....+.. ...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 49 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLT--GEFEK-----------------------------KYVATLGVEVHPLDFHTNRGKI 49 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CCCCC-----------------------------CCCCceeeEEEEEEEEECCEEE
Confidence 3699999999999999999853 21110 00011112222233333 346
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCCCch
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~vp~~IvviNK~D~~~~~~~ 239 (514)
.+.++||||+++|..........+|++|+|+|.+.+.. ++ .....+..+... ++| +|++.||+|+....
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~p-iiiv~nK~Dl~~~~-- 120 (166)
T cd00877 50 RFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVT---YK---NVPNWHRDLVRVCGNIP-IVLCGNKVDIKDRK-- 120 (166)
T ss_pred EEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCc-EEEEEEchhccccc--
Confidence 78999999999887655556678999999999987632 10 111222222222 588 99999999984211
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+..+...+.+. ...+++++||++|.|+.++++
T Consensus 121 ------~~~~~~~~~~~------~~~~~~e~Sa~~~~~v~~~f~ 152 (166)
T cd00877 121 ------VKAKQITFHRK------KNLQYYEISAKSNYNFEKPFL 152 (166)
T ss_pred ------CCHHHHHHHHH------cCCEEEEEeCCCCCChHHHHH
Confidence 00111112222 146899999999999998654
No 210
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.58 E-value=5e-15 Score=135.74 Aligned_cols=156 Identities=14% Similarity=0.150 Sum_probs=93.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEe--eeEEEEeCCe
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEV--GRAHFETETT 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~--~~~~~~~~~~ 161 (514)
++|+++|.+++|||||+++|.... ... + ......+. ....+.....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~--~~~-----------------------------~-~~~~~~~~~~~~~~~~~~~~ 48 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGK--FPT-----------------------------E-YVPTVFDNYSATVTVDGKQV 48 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CCC-----------------------------C-CCCceeeeeEEEEEECCEEE
Confidence 479999999999999999994321 100 0 00111111 1112222345
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCCCch
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~vp~~IvviNK~D~~~~~~~ 239 (514)
.+.|+||||+++|..........+|++++|+|+++... +. ....+.+..+... ++| ++++.||+|+......
T Consensus 49 ~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~--~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~ 122 (171)
T cd00157 49 NLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSS---FE--NVKTKWIPEIRHYCPNVP-IILVGTKIDLRDDENT 122 (171)
T ss_pred EEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHhhCCCCC-EEEEEccHHhhhchhh
Confidence 79999999999886655556678999999999987421 10 1122233333333 477 9999999998433211
Q ss_pred HHH-----HHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 240 KER-----YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 240 ~~~-----~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
... ..-...+...+....++ .+++++||++|.|+.+++
T Consensus 123 ~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~ 165 (171)
T cd00157 123 LKKLEKGKEPITPEEGEKLAKEIGA-----IGYMECSALTQEGVKEVF 165 (171)
T ss_pred hhhcccCCCccCHHHHHHHHHHhCC-----eEEEEeecCCCCCHHHHH
Confidence 000 00012233334444432 389999999999999853
No 211
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.58 E-value=3.2e-14 Score=134.49 Aligned_cols=152 Identities=16% Similarity=0.161 Sum_probs=97.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC-
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 160 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~- 160 (514)
..++|+++|..|+|||||+++|+.. .... .....+..+.....+...+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~--~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 53 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADN--TFSG-----------------------------SYITTIGVDFKIRTVEINGE 53 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC--CCCC-----------------------------CcCccccceeEEEEEEECCE
Confidence 3589999999999999999998431 1110 0001122222223344343
Q ss_pred -eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCCC
Q 010278 161 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 161 -~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~vp~~IvviNK~D~~~~~ 237 (514)
..+.|+||||++.|.......+..+|++|+|+|+++... |+ ...+.+..+... .+| ++|+.||+|+....
T Consensus 54 ~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s---~~---~~~~~~~~i~~~~~~~p-iivVgNK~Dl~~~~ 126 (199)
T cd04110 54 RVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGES---FV---NVKRWLQEIEQNCDDVC-KVLVGNKNDDPERK 126 (199)
T ss_pred EEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECccccccc
Confidence 568899999999998887777889999999999987521 11 223333333332 366 88999999984211
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. ....+...+.+.. .++++++||++|.|+.++++
T Consensus 127 --~----~~~~~~~~~~~~~------~~~~~e~Sa~~~~gi~~lf~ 160 (199)
T cd04110 127 --V----VETEDAYKFAGQM------GISLFETSAKENINVEEMFN 160 (199)
T ss_pred --c----cCHHHHHHHHHHc------CCEEEEEECCCCcCHHHHHH
Confidence 0 0112222333333 25799999999999998754
No 212
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.58 E-value=1.7e-14 Score=131.45 Aligned_cols=148 Identities=17% Similarity=0.155 Sum_probs=91.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC--e
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~--~ 161 (514)
.+|+++|.+++|||||+++++. +...... .....+.....+..++ .
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~--~~~~~~~------------------------------~~t~~~~~~~~~~~~~~~~ 49 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVS--GTFIEKY------------------------------DPTIEDFYRKEIEVDSSPS 49 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCCCC------------------------------CCchhheEEEEEEECCEEE
Confidence 5799999999999999998843 2211100 0000001111222233 4
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCCC
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~~ 237 (514)
.+.|+||||+++|...+...+..+|++|+|+|.++... |. +..+.+..+.. .++| ++++.||+|+...
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~~- 121 (163)
T cd04176 50 VLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQT---FQ---DIKPMRDQIVRVKGYEKVP-IILVGNKVDLESE- 121 (163)
T ss_pred EEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccchhc-
Confidence 57899999999998877777889999999999987521 11 22222222322 3688 8999999998321
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
..... .+...+.+.. .++++++||++|.|+.+++
T Consensus 122 -~~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04176 122 -REVSS----AEGRALAEEW------GCPFMETSAKSKTMVNELF 155 (163)
T ss_pred -CccCH----HHHHHHHHHh------CCEEEEecCCCCCCHHHHH
Confidence 10000 1112222222 2589999999999999864
No 213
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.58 E-value=9e-15 Score=134.71 Aligned_cols=156 Identities=17% Similarity=0.126 Sum_probs=92.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC--Ce
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~--~~ 161 (514)
++|+++|++++|||||++++++. ...... .....+.-...+..+ .+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~--~~~~~~------------------------------~~t~~~~~~~~~~~~~~~~ 48 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYAND--AFPEEY------------------------------VPTVFDHYAVSVTVGGKQY 48 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC--CCCCCC------------------------------CCceeeeeEEEEEECCEEE
Confidence 47999999999999999988432 111000 000011111122233 35
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHH--HcCCCeEEEEEeeccCCCCCc
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAK--TLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~-e~l~~~~--~~~vp~~IvviNK~D~~~~~~ 238 (514)
.+.|+||||+.+|..........+|++|+|+|..+... |+ ... ..+..+. ..++| ++++.||+|+.....
T Consensus 49 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s---~~---~~~~~~~~~l~~~~~~~p-iivv~nK~Dl~~~~~ 121 (174)
T cd04135 49 LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPAS---FQ---NVKEEWVPELKEYAPNVP-YLLVGTQIDLRDDPK 121 (174)
T ss_pred EEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEeEchhhhcChh
Confidence 67899999999987766666788999999999887521 10 111 1122222 24677 899999999832210
Q ss_pred hHHHHH------HHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 239 SKERYD------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 239 ~~~~~~------~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
...... -..++...+.+.++. .+++.+||++|.|+.++++
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~gi~~~f~ 167 (174)
T cd04135 122 TLARLNDMKEKPVTVEQGQKLAKEIGA-----HCYVECSALTQKGLKTVFD 167 (174)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcCC-----CEEEEecCCcCCCHHHHHH
Confidence 000000 001223334444443 3799999999999998643
No 214
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.58 E-value=8.4e-15 Score=134.91 Aligned_cols=152 Identities=18% Similarity=0.180 Sum_probs=91.6
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC--eEE
Q 010278 86 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TRF 163 (514)
Q Consensus 86 v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~--~~i 163 (514)
|+++|..++|||||+++++. +...... ...+. ..-...+..++ ..+
T Consensus 1 i~i~G~~~vGKTsli~~~~~--~~~~~~~-----------------------------~~~~~-~~~~~~~~~~~~~~~~ 48 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTT--NAFPEDY-----------------------------VPTVF-ENYSADVEVDGKPVEL 48 (174)
T ss_pred CEEECCCCCCHHHHHHHHHh--CCCCCCC-----------------------------CCcEE-eeeeEEEEECCEEEEE
Confidence 58999999999999999853 2211100 00010 11111222233 468
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--cCCCeEEEEEeeccCCCCCchHH
Q 010278 164 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWSKE 241 (514)
Q Consensus 164 ~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~--~~vp~~IvviNK~D~~~~~~~~~ 241 (514)
.|+||||++.|.......+..+|++|+|+|.+.... |+ ......+..+.. .++| +|+|.||+|+... ..
T Consensus 49 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~--~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~---~~ 119 (174)
T smart00174 49 GLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPAS---FE--NVKEKWYPEVKHFCPNTP-IILVGTKLDLRED---KS 119 (174)
T ss_pred EEEECCCCcccchhchhhcCCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHhhCCCCC-EEEEecChhhhhC---hh
Confidence 999999999997766667789999999999986421 10 000112222332 2677 9999999998421 11
Q ss_pred HHHHH---------HhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 242 RYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 242 ~~~~i---------~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
..+.+ .++...+.+..++ .+++++||++|.|+.++++
T Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~lf~ 165 (174)
T smart00174 120 TLRELSKQKQEPVTYEQGEALAKRIGA-----VKYLECSALTQEGVREVFE 165 (174)
T ss_pred hhhhhhcccCCCccHHHHHHHHHHcCC-----cEEEEecCCCCCCHHHHHH
Confidence 11111 1222334444442 3799999999999998644
No 215
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.58 E-value=2.2e-14 Score=133.02 Aligned_cols=149 Identities=17% Similarity=0.113 Sum_probs=91.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC--Ce
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~--~~ 161 (514)
.+|+++|++|+|||||+++|+... ..... ...+.......+... ++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~--~~~~~------------------------------~~t~~~~~~~~~~~~~~~~ 49 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGH--FVESY------------------------------YPTIENTFSKIIRYKGQDY 49 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--Ccccc------------------------------CcchhhhEEEEEEECCEEE
Confidence 589999999999999999995321 11000 000000001112223 35
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHH-HHH---HcCCCeEEEEEeeccCCCCC
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAK---TLGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~-~~~---~~~vp~~IvviNK~D~~~~~ 237 (514)
.+.|+||||+.+|.......+..+|++|+|+|...... ++ ...+.+. ++. ..+.| +|+++||+|+...+
T Consensus 50 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~ 122 (180)
T cd04137 50 HLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKS---FE---VVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQR 122 (180)
T ss_pred EEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEchhhhhcC
Confidence 68999999999998777777889999999999987531 00 1111112 222 23567 89999999983211
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.... .++..+.+.+ ..+++++||++|.|+.+++.
T Consensus 123 --~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 123 --QVST----EEGKELAESW------GAAFLESSARENENVEEAFE 156 (180)
T ss_pred --ccCH----HHHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 1001 1122222332 25799999999999998754
No 216
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.58 E-value=9.6e-15 Score=134.40 Aligned_cols=151 Identities=17% Similarity=0.156 Sum_probs=91.1
Q ss_pred EEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC-CeEEEEE
Q 010278 88 FIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-TTRFTIL 166 (514)
Q Consensus 88 ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~-~~~i~li 166 (514)
++|++|+|||||+++|....-. .....+.|+......+.+. +..+.|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~~~i~ 49 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK-------------------------------VANYPFTTLEPNLGVVEVPDGARIQVA 49 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc-------------------------------ccCCCceeecCcceEEEcCCCCeEEEE
Confidence 5899999999999999432110 1122455666555556677 8899999
Q ss_pred eCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCcccccc-cCCcchHHHHHHHH----------HcCCCeEEEEE
Q 010278 167 DAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGF-EKGGQTREHVMLAK----------TLGVTKLLLVV 228 (514)
Q Consensus 167 DtPGh~~-------f~~~~~~g~~~~D~ailVVda~~g~~e~~~-~~~~qt~e~l~~~~----------~~~vp~~Ivvi 228 (514)
||||+.+ +...+...+..+|++++|+|+...... +. ....+...+...+. ..+.| +++++
T Consensus 50 DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~ 127 (176)
T cd01881 50 DIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDI-GGVDPLEDYEILNAELKLYDLETILGLLTAKP-VIYVL 127 (176)
T ss_pred eccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccc-cccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC-eEEEE
Confidence 9999733 233455667789999999999875100 00 00001111222222 14677 89999
Q ss_pred eeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 229 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 229 NK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
||+|+.... ...... ....... ...+++++||++|.|+.++.+
T Consensus 128 NK~Dl~~~~----~~~~~~--~~~~~~~------~~~~~~~~Sa~~~~gl~~l~~ 170 (176)
T cd01881 128 NKIDLDDAE----ELEEEL--VRELALE------EGAEVVPISAKTEEGLDELIR 170 (176)
T ss_pred EchhcCchh----HHHHHH--HHHHhcC------CCCCEEEEehhhhcCHHHHHH
Confidence 999984221 111111 1111111 135799999999999988543
No 217
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.57 E-value=4.7e-14 Score=132.15 Aligned_cols=152 Identities=14% Similarity=0.194 Sum_probs=99.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC-
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 160 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~- 160 (514)
..++|+++|..++|||||+.++.. +... .+....++.+.....+..++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~--~~~~-----------------------------~~~~~t~~~~~~~~~i~~~~~ 53 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQD--GSTE-----------------------------SPYGYNMGIDYKTTTILLDGR 53 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc--CCCC-----------------------------CCCCCcceeEEEEEEEEECCE
Confidence 458999999999999999998842 2111 01111222332223333334
Q ss_pred -eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--cCCCeEEEEEeeccCCCCC
Q 010278 161 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 161 -~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~--~~vp~~IvviNK~D~~~~~ 237 (514)
..+.|+||||+++|...+....+.+|++|||+|.+.... |+ +....+..+.. -++| +|++.||+|+...
T Consensus 54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~S---f~---~~~~w~~~i~~~~~~~p-iilVGNK~DL~~~- 125 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWS---FD---GIDRWIKEIDEHAPGVP-KILVGNRLHLAFK- 125 (189)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECccchhc-
Confidence 678999999999998877666789999999999987532 11 23333334433 2577 8999999998321
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. -..++.+.+.+.. +++++.+||++|.|+.++++
T Consensus 126 -~~----v~~~~~~~~a~~~------~~~~~e~SAk~g~~V~~~F~ 160 (189)
T cd04121 126 -RQ----VATEQAQAYAERN------GMTFFEVSPLCNFNITESFT 160 (189)
T ss_pred -cC----CCHHHHHHHHHHc------CCEEEEecCCCCCCHHHHHH
Confidence 00 1122344444444 35799999999999999754
No 218
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.57 E-value=2e-14 Score=134.15 Aligned_cols=154 Identities=14% Similarity=0.133 Sum_probs=93.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe---CC
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET---ET 160 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~---~~ 160 (514)
++|+++|..++|||||+++|+.. .... .....+..+.. ..+.. ..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~--~~~~-----------------------------~~~~t~~~~~~-~~i~~~~~~~ 48 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQG--KFPE-----------------------------EYVPTVFENYV-TNIQGPNGKI 48 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhC--cCCC-----------------------------CCCCeeeeeeE-EEEEecCCcE
Confidence 47999999999999999999532 1110 00011111111 11222 23
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHH-HHHHHHH--cCCCeEEEEEeeccCCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e-~l~~~~~--~~vp~~IvviNK~D~~~~~ 237 (514)
..+.|+||||+++|..........+|++|+|+|+++... |+ .... .+..... .++| +|+|.||+|+....
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 121 (187)
T cd04132 49 IELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTS---LD---NVEDKWFPEVNHFCPGTP-IMLVGLKTDLRKDK 121 (187)
T ss_pred EEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEeChhhhhCc
Confidence 568999999999998877777889999999999987521 11 1111 1222221 3678 89999999983211
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
...+ .-...+...+.+..+. .+++++||++|.|+.+++.
T Consensus 122 -~~~~-~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~f~ 160 (187)
T cd04132 122 -NLDR-KVTPAQAESVAKKQGA-----FAYLECSAKTMENVEEVFD 160 (187)
T ss_pred -cccC-CcCHHHHHHHHHHcCC-----cEEEEccCCCCCCHHHHHH
Confidence 0000 0011233333444432 2789999999999998754
No 219
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.57 E-value=2e-14 Score=129.88 Aligned_cols=147 Identities=20% Similarity=0.145 Sum_probs=93.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC--CeE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TTR 162 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~--~~~ 162 (514)
+|+++|++++|||||+++|+... ..... ...+.+.....+... ...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 48 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEY------------------------------DPTIEDSYRKTIVVDGETYT 48 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCc------------------------------CCChhHeEEEEEEECCEEEE
Confidence 48999999999999999995322 11000 001111111223333 467
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCCCc
Q 010278 163 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 163 i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~~~ 238 (514)
+.++|+||+.+|.......+..+|++++|+|....... .+....+..+.. .++| +++++||+|+....
T Consensus 49 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~- 120 (160)
T cd00876 49 LDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESF------EEIKGYREQILRVKDDEDIP-IVLVGNKCDLENER- 120 (160)
T ss_pred EEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHH------HHHHHHHHHHHHhcCCCCCc-EEEEEECCcccccc-
Confidence 89999999999888887888899999999998865221 122222222222 2577 99999999984311
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
.. ..+.+..+.+..+ .+++++|+++|.|+.+++
T Consensus 121 -~~----~~~~~~~~~~~~~------~~~~~~S~~~~~~i~~l~ 153 (160)
T cd00876 121 -QV----SKEEGKALAKEWG------CPFIETSAKDNINIDEVF 153 (160)
T ss_pred -ee----cHHHHHHHHHHcC------CcEEEeccCCCCCHHHHH
Confidence 11 1233333444433 579999999999999864
No 220
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.57 E-value=1.2e-14 Score=133.41 Aligned_cols=152 Identities=17% Similarity=0.130 Sum_probs=92.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
.+|+++|.+|+|||||+++|.. +..... .+. ..+.. ......+......+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~--~~~~~~----------------------~~~-----t~~~~-~~~~~~~~~~~~~~ 51 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQ--NVFIES----------------------YDP-----TIEDS-YRKQVEIDGRQCDL 51 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCcc----------------------cCC-----cchhe-EEEEEEECCEEEEE
Confidence 5799999999999999999842 211100 000 00100 01111122223578
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH----HHcCCCeEEEEEeeccCCCCCch
Q 010278 164 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 164 ~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~----~~~~vp~~IvviNK~D~~~~~~~ 239 (514)
.++||||+++|.......+..+|++|+|+|...... ++ ........+ ...++| ++++.||+|+....
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~~~~-- 122 (168)
T cd04177 52 EILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEAS---LN---ELGELREQVLRIKDSDNVP-MVLVGNKADLEDDR-- 122 (168)
T ss_pred EEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCCC-EEEEEEChhccccC--
Confidence 899999999998888888889999999999887521 10 111111222 223688 88999999983221
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. ..++...+.+..+ .++++++||++|.|+.++++
T Consensus 123 ~~----~~~~~~~~~~~~~-----~~~~~~~SA~~~~~i~~~f~ 157 (168)
T cd04177 123 QV----SREDGVSLSQQWG-----NVPFYETSARKRTNVDEVFI 157 (168)
T ss_pred cc----CHHHHHHHHHHcC-----CceEEEeeCCCCCCHHHHHH
Confidence 11 1111222233332 36899999999999998643
No 221
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.57 E-value=6.3e-14 Score=130.61 Aligned_cols=154 Identities=16% Similarity=0.223 Sum_probs=95.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC--e
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~--~ 161 (514)
++|+++|..++|||||+.+++. +..... ....-|... ....+..++ .
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~--~~f~~~---------------------------~~~T~g~~~--~~~~i~~~~~~~ 49 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVE--GEFDED---------------------------YIQTLGVNF--MEKTISIRGTEI 49 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CCCCCC---------------------------CCCccceEE--EEEEEEECCEEE
Confidence 4699999999999999999843 211100 000012222 112333444 5
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCCc
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK~D~~~~~~ 238 (514)
.+.|+||+|+++|...+...++.+|++++|+|+++... |+ ...+.+..++.. .+| |+|.||+|+... .
T Consensus 50 ~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s---~~---~i~~~~~~~~~~~~~~~p--ilVgnK~Dl~~~-~ 120 (182)
T cd04128 50 TFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKST---LN---SIKEWYRQARGFNKTAIP--ILVGTKYDLFAD-L 120 (182)
T ss_pred EEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCE--EEEEEchhcccc-c
Confidence 78999999999998777677789999999999887522 11 222333334332 334 578999998421 1
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+......+.++...+.+..+ .+++++||++|.|+.+++.
T Consensus 121 ~~~~~~~~~~~~~~~a~~~~------~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 121 PPEEQEEITKQARKYAKAMK------APLIFCSTSHSINVQKIFK 159 (182)
T ss_pred cchhhhhhHHHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 11111122334444444433 5799999999999999754
No 222
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.57 E-value=3.8e-14 Score=131.04 Aligned_cols=155 Identities=19% Similarity=0.193 Sum_probs=93.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEE-Ee--eeEEEEeCC
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTV-EV--GRAHFETET 160 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~-~~--~~~~~~~~~ 160 (514)
++|+++|..++|||||+.+++. +..... ...|+ +. ....+....
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~--~~f~~~-------------------------------~~~t~~~~~~~~~~~~~~~ 48 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTT--NAFPGE-------------------------------YIPTVFDNYSANVMVDGKP 48 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhc--CCCCCc-------------------------------CCCcceeeeEEEEEECCEE
Confidence 6899999999999999998843 221110 00111 00 011122233
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHHc--CCCeEEEEEeeccCCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~-e~l~~~~~~--~vp~~IvviNK~D~~~~~ 237 (514)
..+.|+||||+++|...+...+..+|++|+|+|.+.... |+ ... .++..+... ++| +|+|.||+|+....
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---f~---~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~~ 121 (174)
T cd01871 49 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS---FE---NVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDK 121 (174)
T ss_pred EEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEeeChhhccCh
Confidence 678899999999997776667789999999999987421 11 111 122323322 577 99999999984322
Q ss_pred chHHHHHHH------HhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEI------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i------~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+..+...+. .++...+.+.++ .++++++||++|.|+.++++
T Consensus 122 ~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~i~~~f~ 168 (174)
T cd01871 122 DTIEKLKEKKLTPITYPQGLAMAKEIG-----AVKYLECSALTQKGLKTVFD 168 (174)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcC-----CcEEEEecccccCCHHHHHH
Confidence 111111110 112222333332 25899999999999998643
No 223
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.56 E-value=2.6e-14 Score=114.53 Aligned_cols=79 Identities=30% Similarity=0.493 Sum_probs=73.4
Q ss_pred ceEEEEEEEc--cCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeE
Q 010278 313 FRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 390 (514)
Q Consensus 313 ~~~~i~~~~~--~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~v 390 (514)
|||+|.++|+ +.|+.++|+|++|.+++||+++++|.+..++|++|++++.++++|.||++|+++|+ +..++++|++
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~--~~~~i~~G~v 78 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETFDGELDEAGAGESVTLTLE--DEIDVSRGDV 78 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEECCcEeCEEcCCCEEEEEEC--CccccCCCCE
Confidence 6899999995 46778999999999999999999999999999999999999999999999999998 4677999999
Q ss_pred Ecc
Q 010278 391 LSS 393 (514)
Q Consensus 391 l~~ 393 (514)
||.
T Consensus 79 l~~ 81 (81)
T cd03695 79 IVA 81 (81)
T ss_pred EeC
Confidence 974
No 224
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=99.56 E-value=5.1e-14 Score=116.21 Aligned_cols=88 Identities=22% Similarity=0.212 Sum_probs=76.8
Q ss_pred eeEEEEEEEEecccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcceEE
Q 010278 401 VTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSIC 477 (514)
Q Consensus 401 ~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~pi~ 477 (514)
+++|+|++.||+... +.+|..||++.+|+++.++.|+|..+ + .+.+|++|+.+.|+|+|++|++
T Consensus 3 ~~~f~a~i~~L~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~~~----~---------~~~~l~~g~~~~v~i~l~~p~~ 69 (93)
T cd03706 3 HDKVEAQVYILSKAEGGRHKPFVSNFQPQMFSLTWDCAARIDLP----P---------GKEMVMPGEDTKVTLILRRPMV 69 (93)
T ss_pred ceEEEEEEEEEcccccCCCccccCCCeeEEEeccceEEEEEECC----C---------CCcEeCCCCEEEEEEEECCcEE
Confidence 588999999976422 37899999999999999999998855 1 2567999999999999999999
Q ss_pred eeecccccccceEEEEeCCeEEEEEEEEec
Q 010278 478 TEKFADFAQLGRFTLRTEGKTVAVGKVTEL 507 (514)
Q Consensus 478 ~e~~~~~~~lgrfilr~~g~tva~G~I~~v 507 (514)
++++ |||+||+.++|+|+|+|+++
T Consensus 70 ~~~g------~rf~lR~~~~tvg~G~V~~~ 93 (93)
T cd03706 70 LEKG------QRFTLRDGNRTIGTGLVTDT 93 (93)
T ss_pred EeeC------CEEEEEECCEEEEEEEEEeC
Confidence 9884 89999999999999999874
No 225
>PLN03110 Rab GTPase; Provisional
Probab=99.56 E-value=4.9e-14 Score=135.03 Aligned_cols=151 Identities=19% Similarity=0.198 Sum_probs=96.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC-
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 160 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~- 160 (514)
..++|+++|+.++|||||+++|+...-. .+....+..+.....+..++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~-------------------------------~~~~~t~g~~~~~~~v~~~~~ 59 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC-------------------------------LESKSTIGVEFATRTLQVEGK 59 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC-------------------------------CCCCCceeEEEEEEEEEECCE
Confidence 4579999999999999999998432110 01112222233233343333
Q ss_pred -eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCC
Q 010278 161 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 161 -~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~~~ 236 (514)
..+.|+||||+++|.......++.+|++|+|+|.+.... |+ .....+..+.. .++| ++++.||+|+...
T Consensus 60 ~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~ 132 (216)
T PLN03110 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---FD---NVQRWLRELRDHADSNIV-IMMAGNKSDLNHL 132 (216)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEEChhcccc
Confidence 578999999999998877777889999999999986422 11 22233333333 3677 8999999998321
Q ss_pred C-chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 N-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~-~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. -..+. ...+.... .++++++||++|.|+.++++
T Consensus 133 ~~~~~~~-------~~~l~~~~------~~~~~e~SA~~g~~v~~lf~ 167 (216)
T PLN03110 133 RSVAEED-------GQALAEKE------GLSFLETSALEATNVEKAFQ 167 (216)
T ss_pred cCCCHHH-------HHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 1 01111 11111222 36899999999999998755
No 226
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.56 E-value=2.8e-14 Score=133.52 Aligned_cols=151 Identities=19% Similarity=0.199 Sum_probs=93.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
++|+++|..++|||||+++|+. +..... .....|.+.......+......+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~--~~~~~~---------------------------~~~t~~~~~~~~~~~~~~~~~~~ 51 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTE--DEFSES---------------------------TKSTIGVDFKIKTVYIENKIIKL 51 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhc--CCCCCC---------------------------CCCceeeEEEEEEEEECCEEEEE
Confidence 4699999999999999999942 211100 00112222222222222234567
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCCC-ch
Q 010278 164 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN-WS 239 (514)
Q Consensus 164 ~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~~~~-~~ 239 (514)
.|+||||+++|.......+..+|++|+|+|++.... |. .....+..+.. .++| +|++.||+|+.... .+
T Consensus 52 ~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~~---~i~~~~~~i~~~~~~~~~-~ivv~nK~Dl~~~~~v~ 124 (188)
T cd04125 52 QIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQES---FE---NLKFWINEINRYARENVI-KVIVANKSDLVNNKVVD 124 (188)
T ss_pred EEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECCCCcccccCC
Confidence 899999999998888788899999999999987521 11 12222222332 2456 89999999984211 01
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. ....+.... .++++.+||++|.|+.+++.
T Consensus 125 ~~-------~~~~~~~~~------~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 125 SN-------IAKSFCDSL------NIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred HH-------HHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 11 111222222 34799999999999998754
No 227
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.55 E-value=2.8e-14 Score=131.31 Aligned_cols=154 Identities=14% Similarity=0.080 Sum_probs=93.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcc-hhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVD-DRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~-~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
++..+|+++|..|+|||||+++++. +... ... ....|..... ..+..+
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~--~~f~~~~~---------------------------~~T~~~~~~~--~~~~~~ 50 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLG--RSFSLNAY---------------------------SPTIKPRYAV--NTVEVY 50 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhC--CCCCcccC---------------------------CCccCcceEE--EEEEEC
Confidence 5678999999999999999999843 2211 000 0001111111 122333
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-cCCCeEEEEEeeccCCCC
Q 010278 160 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 160 ~--~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~-~~vp~~IvviNK~D~~~~ 236 (514)
+ ..+.++|++|.+.|..........+|++|+|+|+++... ++ ...+.+..+.. .++| +++|+||+|+...
T Consensus 51 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s---~~---~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~ 123 (169)
T cd01892 51 GQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKS---FS---YCAEVYKKYFMLGEIP-CLFVAAKADLDEQ 123 (169)
T ss_pred CeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHH---HH---HHHHHHHHhccCCCCe-EEEEEEccccccc
Confidence 3 568899999999887666666789999999999976411 00 11122222211 2677 9999999998321
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. . ....+...+.+.+++. .++++||++|.|+.++++
T Consensus 124 ~--~----~~~~~~~~~~~~~~~~-----~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 124 Q--Q----RYEVQPDEFCRKLGLP-----PPLHFSSKLGDSSNELFT 159 (169)
T ss_pred c--c----ccccCHHHHHHHcCCC-----CCEEEEeccCccHHHHHH
Confidence 1 0 0111222333444432 458999999999998644
No 228
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.55 E-value=1.1e-13 Score=127.81 Aligned_cols=149 Identities=17% Similarity=0.209 Sum_probs=93.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEee-eEEEEeCC-
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG-RAHFETET- 160 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~-~~~~~~~~- 160 (514)
..+|+++|..++|||||+.+++. +..... ...|+... ...+..++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~--~~f~~~-------------------------------~~~t~~~~~~~~~~~~~~ 48 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFIS--HSFPDY-------------------------------HDPTIEDAYKQQARIDNE 48 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHh--CCCCCC-------------------------------cCCcccceEEEEEEECCE
Confidence 36899999999999999998843 221100 00111100 11122333
Q ss_pred -eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCC
Q 010278 161 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 161 -~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~ 235 (514)
..+.|+||||.++|...+...+..+|++|+|+|.++... |+ ...+.+..+.. .++| +|+|.||+|+..
T Consensus 49 ~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~S---f~---~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl~~ 121 (172)
T cd04141 49 PALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHS---FQ---EASEFKKLITRVRLTEDIP-LVLVGNKVDLES 121 (172)
T ss_pred EEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEChhhhh
Confidence 568999999999998877777889999999999987532 11 22222222222 3578 899999999832
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. .... .++...+.+.. +++++++||++|.|+.++++
T Consensus 122 ~--~~v~----~~~~~~~a~~~------~~~~~e~Sa~~~~~v~~~f~ 157 (172)
T cd04141 122 Q--RQVT----TEEGRNLAREF------NCPFFETSAALRHYIDDAFH 157 (172)
T ss_pred c--CccC----HHHHHHHHHHh------CCEEEEEecCCCCCHHHHHH
Confidence 1 0000 11222233333 35899999999999998754
No 229
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.55 E-value=6.8e-14 Score=127.09 Aligned_cols=149 Identities=21% Similarity=0.269 Sum_probs=96.0
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEEE
Q 010278 86 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTI 165 (514)
Q Consensus 86 v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~l 165 (514)
|+++|++|+|||||++.|...... .. .....+.|.......+ . ..+.|
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~-~~----------------------------~~~~~~~t~~~~~~~~--~-~~~~~ 49 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKL-AR----------------------------TSKTPGKTQLINFFNV--N-DKFRL 49 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCce-ee----------------------------ecCCCCcceeEEEEEc--c-CeEEE
Confidence 799999999999999999521110 00 1111344444333222 2 38999
Q ss_pred EeCCCCcch-------------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010278 166 LDAPGHKSY-------------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 232 (514)
Q Consensus 166 iDtPGh~~f-------------~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D 232 (514)
+||||+... ....+......+++++|+|+..... ....+.+..+...+.| +++++||+|
T Consensus 50 ~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------~~~~~~~~~l~~~~~~-vi~v~nK~D 121 (170)
T cd01876 50 VDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPT-------EIDLEMLDWLEELGIP-FLVVLTKAD 121 (170)
T ss_pred ecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCC-------HhHHHHHHHHHHcCCC-EEEEEEchh
Confidence 999997442 1222333346789999999987632 3555667778888888 899999999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
+.. ..........+...++... ...+++|+|++++.|+.+++
T Consensus 122 ~~~----~~~~~~~~~~~~~~l~~~~----~~~~~~~~Sa~~~~~~~~l~ 163 (170)
T cd01876 122 KLK----KSELAKALKEIKKELKLFE----IDPPIILFSSLKGQGIDELR 163 (170)
T ss_pred cCC----hHHHHHHHHHHHHHHHhcc----CCCceEEEecCCCCCHHHHH
Confidence 832 2233344444554454211 24689999999999998854
No 230
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.55 E-value=6.7e-14 Score=136.57 Aligned_cols=149 Identities=15% Similarity=0.251 Sum_probs=91.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC--CeE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TTR 162 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~--~~~ 162 (514)
+|+++|..++|||||+++++. +..... ....+.+.....+..+ .+.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~--~~f~~~------------------------------y~pTi~d~~~k~~~i~~~~~~ 49 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLG--GRFEEQ------------------------------YTPTIEDFHRKLYSIRGEVYQ 49 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHc--CCCCCC------------------------------CCCChhHhEEEEEEECCEEEE
Confidence 699999999999999999953 221110 0000001111122333 367
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH------------cCCCeEEEEEee
Q 010278 163 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------------LGVTKLLLVVNK 230 (514)
Q Consensus 163 i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~------------~~vp~~IvviNK 230 (514)
+.|+||+|+++|.......+..+|++|+|+|.+.... |+ .....+..+.. .++| +|++.||
T Consensus 50 l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~S---f~---~i~~~~~~I~~~k~~~~~~~~~~~~~p-iIivgNK 122 (247)
T cd04143 50 LDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRES---FE---EVCRLREQILETKSCLKNKTKENVKIP-MVICGNK 122 (247)
T ss_pred EEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhhcccccccccCCCCc-EEEEEEC
Confidence 8899999999987666556788999999999987421 11 11222222211 2567 8999999
Q ss_pred ccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 231 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 231 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+|+... .+... +++..++... ..++++++||++|.|+.++++
T Consensus 123 ~Dl~~~--~~v~~----~ei~~~~~~~-----~~~~~~evSAktg~gI~elf~ 164 (247)
T cd04143 123 ADRDFP--REVQR----DEVEQLVGGD-----ENCAYFEVSAKKNSNLDEMFR 164 (247)
T ss_pred ccchhc--cccCH----HHHHHHHHhc-----CCCEEEEEeCCCCCCHHHHHH
Confidence 998321 11111 2233333211 135799999999999998644
No 231
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.55 E-value=6.1e-14 Score=129.84 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=92.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeee-EEEEeCC--
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR-AHFETET-- 160 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~-~~~~~~~-- 160 (514)
.+|+++|..++|||||+.++++ +..... .-.|+.... ..+..++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~--~~f~~~-------------------------------~~pt~~~~~~~~~~~~~~~ 48 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTT--NKFPSE-------------------------------YVPTVFDNYAVTVMIGGEP 48 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCCC-------------------------------CCCceeeeeEEEEEECCEE
Confidence 5799999999999999998843 221100 001111111 1233334
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHH-HHHHHHH--cCCCeEEEEEeeccCCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e-~l~~~~~--~~vp~~IvviNK~D~~~~~ 237 (514)
..+.|+||||+++|...+-...+.+|++|||+|.+.... |+ ...+ .+..+.. .++| +|+|.||+|+...
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s---~~---~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~- 120 (175)
T cd01874 49 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSS---FE---NVKEKWVPEITHHCPKTP-FLLVGTQIDLRDD- 120 (175)
T ss_pred EEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEECHhhhhC-
Confidence 678899999999997766666789999999999987531 11 1221 2222322 2577 9999999998321
Q ss_pred chHHHHHHHH---------hhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEIE---------SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~---------~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.+..+.+. ++...+.++.+ .++++++||++|.|+.++++
T Consensus 121 --~~~~~~l~~~~~~~v~~~~~~~~a~~~~-----~~~~~e~SA~tg~~v~~~f~ 168 (175)
T cd01874 121 --PSTIEKLAKNKQKPITPETGEKLARDLK-----AVKYVECSALTQKGLKNVFD 168 (175)
T ss_pred --hhhHHHhhhccCCCcCHHHHHHHHHHhC-----CcEEEEecCCCCCCHHHHHH
Confidence 11111110 11122222222 35899999999999998643
No 232
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.54 E-value=4.9e-14 Score=135.34 Aligned_cols=170 Identities=21% Similarity=0.259 Sum_probs=106.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
+..+.++||++|.||+|||||.|.|++..-.. ..+....|.......+..
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~------------------------------vS~K~~TTr~~ilgi~ts 117 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSA------------------------------VSRKVHTTRHRILGIITS 117 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCcccc------------------------------ccccccceeeeeeEEEec
Confidence 45678999999999999999999996543322 222345566666677888
Q ss_pred CCeEEEEEeCCC------Ccch------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-cCCCeEE
Q 010278 159 ETTRFTILDAPG------HKSY------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLL 225 (514)
Q Consensus 159 ~~~~i~liDtPG------h~~f------~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~-~~vp~~I 225 (514)
+..++.|+|||| |+.+ +.+.-.++..||++++|+|+...-. ...-+.|..+.. ..+| -|
T Consensus 118 ~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~-------~l~p~vl~~l~~ys~ip-s~ 189 (379)
T KOG1423|consen 118 GETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRT-------PLHPRVLHMLEEYSKIP-SI 189 (379)
T ss_pred CceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcC-------ccChHHHHHHHHHhcCC-ce
Confidence 899999999999 2222 3344456789999999999985211 122223333333 4678 67
Q ss_pred EEEeeccCCCCCchHHHHHHHHhhh------------hhhhhh----------ccCcccCCeeEEeeccccccccccccc
Q 010278 226 LVVNKMDDHTVNWSKERYDEIESKM------------TPFLKA----------SGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 226 vviNK~D~~~~~~~~~~~~~i~~~l------------~~~l~~----------~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+++||+|... .+..+-..+..+ +.-+.. .|+. .--.+|++||++|.||.++.+
T Consensus 190 lvmnkid~~k---~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gws--hfe~vF~vSaL~G~Gikdlkq 264 (379)
T KOG1423|consen 190 LVMNKIDKLK---QKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWS--HFERVFMVSALYGEGIKDLKQ 264 (379)
T ss_pred eeccchhcch---hhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcc--cceeEEEEecccccCHHHHHH
Confidence 8999999732 111111111111 111110 0110 012489999999999998743
Q ss_pred -----cCCCCCCC
Q 010278 284 -----KSLCPWWN 291 (514)
Q Consensus 284 -----~~~~~w~~ 291 (514)
...-||+-
T Consensus 265 yLmsqa~~gpW~y 277 (379)
T KOG1423|consen 265 YLMSQAPPGPWKY 277 (379)
T ss_pred HHHhcCCCCCCCC
Confidence 44567863
No 233
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.54 E-value=4.7e-14 Score=114.97 Aligned_cols=85 Identities=27% Similarity=0.445 Sum_probs=73.4
Q ss_pred ceeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEE-cceEEe
Q 010278 400 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQV-NNSICT 478 (514)
Q Consensus 400 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~-~~pi~~ 478 (514)
++++|+|++.|++. ..+|.+||++++|+++.+++|+|.++.+ +++++|+.+.|+|+| .+|+|+
T Consensus 2 ~~~~f~A~i~il~~--~~~i~~Gy~~~l~~~t~~~~~~i~~i~~--------------~~l~~g~~~~v~i~f~~~p~~~ 65 (87)
T cd03708 2 ACWEFEAEILVLHH--PTTISPGYQATVHIGSIRQTARIVSIDK--------------DVLRTGDRALVRFRFLYHPEYL 65 (87)
T ss_pred ceeEEEEEEEEEcC--CCcccCCCEeEEEEcCCEEEEEEEeccH--------------hhccCCCeEEEEEEECCCCcEE
Confidence 47899999999542 3789999999999999999999997643 569999999999995 799988
Q ss_pred eecccccccceEEEEeCCeEEEEEEEEec
Q 010278 479 EKFADFAQLGRFTLRTEGKTVAVGKVTEL 507 (514)
Q Consensus 479 e~~~~~~~lgrfilr~~g~tva~G~I~~v 507 (514)
++ +|||+|| +|+|+|+|+|+++
T Consensus 66 e~------~grf~lr-~g~tva~G~I~~~ 87 (87)
T cd03708 66 RE------GQRLIFR-EGRTKGVGEVTKV 87 (87)
T ss_pred cc------CCeEEEE-CCCcEEEEEEEEC
Confidence 86 5999995 5599999999874
No 234
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.54 E-value=7.9e-14 Score=133.84 Aligned_cols=153 Identities=15% Similarity=0.166 Sum_probs=96.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
...++|+++|..++|||||+++++. +..... ....-|.++...........
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~--~~f~~~---------------------------~~~tig~~~~~~~~~~~~~~ 61 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK---------------------------YEPTIGVEVHPLDFFTNCGK 61 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhh--CCCCCc---------------------------cCCccceeEEEEEEEECCeE
Confidence 5568999999999999999998742 221100 00112333322222222234
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH--HcCCCeEEEEEeeccCCCCCc
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK--TLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~--~~~vp~~IvviNK~D~~~~~~ 238 (514)
..+.|+||||+++|........+.+|++|+|+|.+.... |+ .....+..+. ..++| +++|.||+|+.....
T Consensus 62 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s---~~---~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v 134 (219)
T PLN03071 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---YK---NVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV 134 (219)
T ss_pred EEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHH---HH---HHHHHHHHHHHhCCCCc-EEEEEEchhhhhccC
Confidence 688999999999998766666789999999999987532 11 1122222222 23577 899999999832111
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. +++ .+.+.. .++++.+||++|.|+.+++.
T Consensus 135 ~~-------~~~-~~~~~~------~~~~~e~SAk~~~~i~~~f~ 165 (219)
T PLN03071 135 KA-------KQV-TFHRKK------NLQYYEISAKSNYNFEKPFL 165 (219)
T ss_pred CH-------HHH-HHHHhc------CCEEEEcCCCCCCCHHHHHH
Confidence 11 111 122222 36899999999999998754
No 235
>PLN03108 Rab family protein; Provisional
Probab=99.53 E-value=4.1e-14 Score=134.98 Aligned_cols=153 Identities=19% Similarity=0.170 Sum_probs=95.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeE
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 162 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~ 162 (514)
..+|+++|.+++|||||+++|+...- ... ....-|.+.......+......
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~--~~~---------------------------~~~ti~~~~~~~~i~~~~~~i~ 56 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRF--QPV---------------------------HDLTIGVEFGARMITIDNKPIK 56 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC--CCC---------------------------CCCCccceEEEEEEEECCEEEE
Confidence 47899999999999999999843211 000 0001122222222223222356
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCCCch
Q 010278 163 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 163 i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~~~~~~ 239 (514)
+.|+||||++.|...+...++.+|++|+|+|++.... | ....+.+..+.. .++| ++++.||+|+....
T Consensus 57 l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s---~---~~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~-- 127 (210)
T PLN03108 57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLASWLEDARQHANANMT-IMLIGNKCDLAHRR-- 127 (210)
T ss_pred EEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECccCcccc--
Confidence 8899999999998877777889999999999986421 1 011122222222 2567 89999999983211
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. -..++...+++..+ ++++++||++|.|+.+++.
T Consensus 128 ~----~~~~~~~~~~~~~~------~~~~e~Sa~~~~~v~e~f~ 161 (210)
T PLN03108 128 A----VSTEEGEQFAKEHG------LIFMEASAKTAQNVEEAFI 161 (210)
T ss_pred C----CCHHHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 0 01122233344433 5899999999999998643
No 236
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.53 E-value=2.3e-14 Score=132.21 Aligned_cols=154 Identities=15% Similarity=0.149 Sum_probs=92.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC--Ce
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~--~~ 161 (514)
++|+++|..++|||||+.+++. +.... .......+.-...+..+ ..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~--~~~~~------------------------------~~~~t~~~~~~~~~~~~~~~~ 48 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTT--NGYPT------------------------------EYVPTAFDNFSVVVLVDGKPV 48 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CCCCC------------------------------CCCCceeeeeeEEEEECCEEE
Confidence 4689999999999999988743 11110 00111111111122223 35
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--cCCCeEEEEEeeccCCCCCch
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~--~~vp~~IvviNK~D~~~~~~~ 239 (514)
.+.|+||||+++|....-..++.+|++|+|+|..+... |+ ......+..+.. .++| ++++.||+|+....
T Consensus 49 ~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~s---f~--~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-- 120 (173)
T cd04130 49 RLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSS---FQ--NISEKWIPEIRKHNPKAP-IILVGTQADLRTDV-- 120 (173)
T ss_pred EEEEEECCCChhhccccccccCCCcEEEEEEECCCHHH---HH--HHHHHHHHHHHhhCCCCC-EEEEeeChhhccCh--
Confidence 78899999999997776667789999999999987521 10 111122333333 3577 89999999983211
Q ss_pred HHHHHH---------HHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 240 KERYDE---------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 240 ~~~~~~---------i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
..... ..++...+.+..+. .+++++||++|.|+.++++
T Consensus 121 -~~~~~~~~~~~~~v~~~~~~~~a~~~~~-----~~~~e~Sa~~~~~v~~lf~ 167 (173)
T cd04130 121 -NVLIQLARYGEKPVSQSRAKALAEKIGA-----CEYIECSALTQKNLKEVFD 167 (173)
T ss_pred -hHHHHHhhcCCCCcCHHHHHHHHHHhCC-----CeEEEEeCCCCCCHHHHHH
Confidence 00000 01122233333332 3899999999999998654
No 237
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.52 E-value=5.7e-14 Score=128.31 Aligned_cols=149 Identities=18% Similarity=0.199 Sum_probs=87.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
+|+++|.+++|||||+.+++. +...... .+. .+ +.......+......+.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~--~~~~~~~------------------------~~t---~~-~~~~~~~~~~~~~~~~~ 50 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLT--KRFIGEY------------------------DPN---LE-SLYSRQVTIDGEQVSLE 50 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHh--Ccccccc------------------------CCC---hH-HhceEEEEECCEEEEEE
Confidence 489999999999999999853 2110000 000 00 01111112222234688
Q ss_pred EEeCCCCcch-HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-----cCCCeEEEEEeeccCCCC-C
Q 010278 165 ILDAPGHKSY-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMDDHTV-N 237 (514)
Q Consensus 165 liDtPGh~~f-~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~-----~~vp~~IvviNK~D~~~~-~ 237 (514)
|+||||+..+ .......++.+|++|+|+|++.... |+ .....+..+.. .++| +|+|.||+|+... .
T Consensus 51 i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~ 123 (165)
T cd04146 51 ILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSS---FD---EISQLKQLIREIKKRDREIP-VILVGNKADLLHYRQ 123 (165)
T ss_pred EEECCCCcccccchHHHHHHhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcCCCCCC-EEEEEECCchHHhCc
Confidence 9999999863 4445566789999999999987532 11 12222222222 3677 8999999998321 0
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccc-ccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~-gi~~l~~ 283 (514)
.+. ++...+.+..+ .+++++||++|. |+.+++.
T Consensus 124 v~~-------~~~~~~~~~~~------~~~~e~Sa~~~~~~v~~~f~ 157 (165)
T cd04146 124 VST-------EEGEKLASELG------CLFFEVSAAEDYDGVHSVFH 157 (165)
T ss_pred cCH-------HHHHHHHHHcC------CEEEEeCCCCCchhHHHHHH
Confidence 111 12222233332 579999999995 8998643
No 238
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=99.52 E-value=1.2e-13 Score=113.34 Aligned_cols=85 Identities=26% Similarity=0.322 Sum_probs=74.8
Q ss_pred eeEEEEEEEEecccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcceEE
Q 010278 401 VTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSIC 477 (514)
Q Consensus 401 ~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~pi~ 477 (514)
+..|+|++.+|+... ..+|+.||++.+|+++.++.|+|..+. ++++|++|+.+.|+|.|++|++
T Consensus 3 ~~~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~~~~i~~l~-------------~~~~i~~g~~~~v~l~l~~pv~ 69 (90)
T cd03707 3 HTKFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDVTGSITLPE-------------GTEMVMPGDNVKMTVELIHPIA 69 (90)
T ss_pred eeEEEEEEEEEcccccCCCCcccCCceeEEEeccCeEEEEEEccC-------------cccccCCCCEEEEEEEECCcEE
Confidence 688999999976432 268999999999999999999988653 4667999999999999999999
Q ss_pred eeecccccccceEEEEeCCeEEEEEEE
Q 010278 478 TEKFADFAQLGRFTLRTEGKTVAVGKV 504 (514)
Q Consensus 478 ~e~~~~~~~lgrfilr~~g~tva~G~I 504 (514)
++++ |||+||+.++|+|+|+|
T Consensus 70 ~~~~------~rf~lR~~~~tig~G~V 90 (90)
T cd03707 70 LEKG------LRFAIREGGRTVGAGVI 90 (90)
T ss_pred EecC------CEEEEecCCcEEEEEEC
Confidence 8874 89999999999999986
No 239
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.52 E-value=1.5e-13 Score=125.34 Aligned_cols=147 Identities=18% Similarity=0.221 Sum_probs=92.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC--eE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TR 162 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~--~~ 162 (514)
+|+++|..++|||||+.+++ .+.... +....+..+.....+...+ ..
T Consensus 2 ki~vvG~~~~GKTsli~~~~--~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~ 50 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFT--DNEFHS-----------------------------SHISTIGVDFKMKTIEVDGIKVR 50 (161)
T ss_pred EEEEECcCCCCHHHHHHHHh--cCCCCC-----------------------------CCCCceeeEEEEEEEEECCEEEE
Confidence 69999999999999999884 222110 0012222222223344444 56
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCCC-c
Q 010278 163 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN-W 238 (514)
Q Consensus 163 i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~~~~-~ 238 (514)
+.|+||||.++|...+......+|++++|+|...... |+ .....+..+.. .++| ++++.||+|+.... .
T Consensus 51 l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---f~---~~~~~~~~~~~~~~~~~~-iilvgnK~Dl~~~~~v 123 (161)
T cd04117 51 IQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERS---YQ---HIMKWVSDVDEYAPEGVQ-KILIGNKADEEQKRQV 123 (161)
T ss_pred EEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECcccccccCC
Confidence 8899999999998777777889999999999876421 11 12222222222 2466 89999999983221 0
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
.. ++...+.+.. ..+++++||++|.|+.+++
T Consensus 124 ~~-------~~~~~~~~~~------~~~~~e~Sa~~~~~v~~~f 154 (161)
T cd04117 124 GD-------EQGNKLAKEY------GMDFFETSACTNSNIKESF 154 (161)
T ss_pred CH-------HHHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 11 1222222322 2579999999999999864
No 240
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.52 E-value=1.3e-13 Score=129.23 Aligned_cols=157 Identities=14% Similarity=0.134 Sum_probs=91.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEe-eeEEEEeCCeE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEV-GRAHFETETTR 162 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~-~~~~~~~~~~~ 162 (514)
.+|+++|..++|||||+.+|+. +..... ...-+.... ...........
T Consensus 1 ~kivivG~~~vGKTsli~~~~~--~~~~~~-----------------------------~~~t~~~~~~~~i~~~~~~~~ 49 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTR--GYFPQV-----------------------------YEPTVFENYVHDIFVDGLHIE 49 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhc--CCCCCc-----------------------------cCCcceeeeEEEEEECCEEEE
Confidence 3689999999999999999843 211100 000010010 11112222367
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHH--cCCCeEEEEEeeccCCCCCch
Q 010278 163 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKT--LGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 163 i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~-e~l~~~~~--~~vp~~IvviNK~D~~~~~~~ 239 (514)
+.|+||||++.|..........+|++|+|.|.+.... |+ ... ..+..+.. .++| +|+|.||+|+....-.
T Consensus 50 l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~s---f~---~~~~~~~~~i~~~~~~~p-iilvgNK~Dl~~~~~~ 122 (189)
T cd04134 50 LSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDS---LE---NVESKWLGEIREHCPGVK-LVLVALKCDLREARNE 122 (189)
T ss_pred EEEEECCCChhccccccccccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEChhhccChhh
Confidence 8999999999986655556678999999999887532 11 111 12333333 2677 9999999998432100
Q ss_pred HHHHHH------HHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 240 KERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 240 ~~~~~~------i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
...... ..++...+.+..+ .++++++||++|.|+.+++.
T Consensus 123 ~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~SAk~~~~v~e~f~ 167 (189)
T cd04134 123 RDDLQRYGKHTISYEEGLAVAKRIN-----ALRYLECSAKLNRGVNEAFT 167 (189)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHcC-----CCEEEEccCCcCCCHHHHHH
Confidence 000000 0111222233322 36899999999999998644
No 241
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.51 E-value=8.9e-14 Score=132.72 Aligned_cols=150 Identities=17% Similarity=0.183 Sum_probs=93.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe---CC
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET---ET 160 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~---~~ 160 (514)
.+|+++|..++|||||+++|+.. .... .....+..+.....+.. ..
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~--~~~~-----------------------------~~~~ti~~d~~~~~i~~~~~~~ 51 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEG--RFAE-----------------------------VSDPTVGVDFFSRLIEIEPGVR 51 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC--CCCC-----------------------------CCCceeceEEEEEEEEECCCCE
Confidence 68999999999999999999532 1110 00011222222222332 23
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~ 236 (514)
..+.|+||||++.|.......++.+|++|+|+|.++... |+ ...+.+..+.. ..+| ++++.||+|+...
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~S---f~---~l~~~~~~i~~~~~~~~~~-iilvgNK~Dl~~~ 124 (211)
T cd04111 52 IKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRES---FE---HVHDWLEEARSHIQPHRPV-FILVGHKCDLESQ 124 (211)
T ss_pred EEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCe-EEEEEEccccccc
Confidence 578999999999998877777889999999999987421 11 12222332222 1344 7889999998321
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. ...++...+.+..+ ++++.+||++|.|+.++++
T Consensus 125 --~~----v~~~~~~~~~~~~~------~~~~e~Sak~g~~v~e~f~ 159 (211)
T cd04111 125 --RQ----VTREEAEKLAKDLG------MKYIETSARTGDNVEEAFE 159 (211)
T ss_pred --cc----cCHHHHHHHHHHhC------CEEEEEeCCCCCCHHHHHH
Confidence 00 01112223333332 5899999999999999755
No 242
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.50 E-value=9.3e-14 Score=128.04 Aligned_cols=158 Identities=14% Similarity=0.125 Sum_probs=91.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
.+|+++|+.++|||||+.+|+.. ...... ....+... .....+......+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~--~~~~~~---------------------------~~t~~~~~-~~~~~~~~~~~~l 51 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKD--QFPEVY---------------------------VPTVFENY-VADIEVDGKQVEL 51 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC--CCCCCC---------------------------CCccccce-EEEEEECCEEEEE
Confidence 47999999999999999998532 111000 00000000 1112222233568
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHH-HHHHHH--cCCCeEEEEEeeccCCCCCchH
Q 010278 164 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH-VMLAKT--LGVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 164 ~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~-l~~~~~--~~vp~~IvviNK~D~~~~~~~~ 240 (514)
.|+||||+++|.......+..+|++++|.|.+.... |+ +..+. +..++. .++| ++++.||+|+...+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~ 124 (175)
T cd01870 52 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS---LE---NIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTR 124 (175)
T ss_pred EEEeCCCchhhhhccccccCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEeeChhcccChhhh
Confidence 999999999987766566789999999999875311 10 11111 122222 3678 99999999984321111
Q ss_pred HHHHH------HHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 241 ERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 241 ~~~~~------i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
..... ...+...+.+..+ ..+++++||++|.|+.++++
T Consensus 125 ~~i~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~lf~ 168 (175)
T cd01870 125 RELAKMKQEPVKPEEGRDMANKIG-----AFGYMECSAKTKEGVREVFE 168 (175)
T ss_pred hhhhhccCCCccHHHHHHHHHHcC-----CcEEEEeccccCcCHHHHHH
Confidence 10000 0112222233332 24799999999999998643
No 243
>PRK09866 hypothetical protein; Provisional
Probab=99.50 E-value=6.1e-13 Score=140.72 Aligned_cols=111 Identities=19% Similarity=0.253 Sum_probs=78.3
Q ss_pred CeEEEEEeCCCCcc-----hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcC--CCeEEEEEeecc
Q 010278 160 TTRFTILDAPGHKS-----YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVNKMD 232 (514)
Q Consensus 160 ~~~i~liDtPGh~~-----f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~--vp~~IvviNK~D 232 (514)
..++.|+||||... +.+.|...+..+|++++|||+..+.. ...++.+..++..+ .| +|+++||+|
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s-------~~DeeIlk~Lkk~~K~~P-VILVVNKID 300 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKS-------ISDEEVREAILAVGQSVP-LYVLVNKFD 300 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCC-------hhHHHHHHHHHhcCCCCC-EEEEEEccc
Confidence 36899999999532 35567778899999999999987632 45667777777777 47 999999999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+ .+......+.+...+...+...++. ...++||||++|.|+..+.+
T Consensus 301 l--~dreeddkE~Lle~V~~~L~q~~i~---f~eIfPVSAlkG~nid~LLd 346 (741)
T PRK09866 301 Q--QDRNSDDADQVRALISGTLMKGCIT---PQQIFPVSSMWGYLANRARH 346 (741)
T ss_pred C--CCcccchHHHHHHHHHHHHHhcCCC---CceEEEEeCCCCCCHHHHHH
Confidence 8 3211222344445444444433332 24799999999999988643
No 244
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=5.6e-14 Score=142.96 Aligned_cols=159 Identities=18% Similarity=0.204 Sum_probs=109.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
-+..+.|+|+|.||+|||||+|+|......|.. ...|.|.|.....|+.+
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVS------------------------------pv~GTTRDaiea~v~~~ 314 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVS------------------------------PVPGTTRDAIEAQVTVN 314 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeC------------------------------CCCCcchhhheeEeecC
Confidence 345699999999999999999999766555433 34899999999999999
Q ss_pred CeEEEEEeCCCCcch---------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCC---------
Q 010278 160 TTRFTILDAPGHKSY---------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV--------- 221 (514)
Q Consensus 160 ~~~i~liDtPGh~~f---------~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~v--------- 221 (514)
++.+.|+||+|.++- +......+..+|++++||||..+.++ +.......+...+.
T Consensus 315 G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~-------sd~~i~~~l~~~~~g~~~~~~~~ 387 (531)
T KOG1191|consen 315 GVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTE-------SDLKIARILETEGVGLVVIVNKM 387 (531)
T ss_pred CeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccc-------cchHHHHHHHHhccceEEEeccc
Confidence 999999999998762 33334456789999999999887664 44444444444432
Q ss_pred --CeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEE-eecccccccccccccc
Q 010278 222 --TKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFL-PISGLMGLNMKTRVDK 284 (514)
Q Consensus 222 --p~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~ii-piSa~~G~gi~~l~~~ 284 (514)
.++|+++||.|+... + .++......++...|. ...+++ .+|+.+++|+..|+..
T Consensus 388 ~~~~~i~~~nk~D~~s~-~-----~~~~~~~~~~~~~~~~---~~~~i~~~vs~~tkeg~~~L~~a 444 (531)
T KOG1191|consen 388 EKQRIILVANKSDLVSK-I-----PEMTKIPVVYPSAEGR---SVFPIVVEVSCTTKEGCERLSTA 444 (531)
T ss_pred cccceEEEechhhccCc-c-----ccccCCceeccccccC---cccceEEEeeechhhhHHHHHHH
Confidence 347888999998321 1 1111111112222111 123444 4999999999987653
No 245
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.50 E-value=3.7e-13 Score=126.42 Aligned_cols=156 Identities=18% Similarity=0.121 Sum_probs=93.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeee-EEEEeC--
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR-AHFETE-- 159 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~-~~~~~~-- 159 (514)
.++|+++|..++|||||+.++++ +..... .-.|+...+ ..+..+
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~--~~f~~~-------------------------------~~~t~~~~~~~~~~~~~~ 49 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTT--NAFPKE-------------------------------YIPTVFDNYSAQTAVDGR 49 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHh--CCCCcC-------------------------------CCCceEeeeEEEEEECCE
Confidence 47899999999999999999843 221100 011221111 112223
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHH-HHHHHHH--cCCCeEEEEEeeccCCCC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e-~l~~~~~--~~vp~~IvviNK~D~~~~ 236 (514)
...+.|+||||+++|....-...+.+|++|+|.|.+.... |+ .... .+..+.. .++| +|+|.||.|+...
T Consensus 50 ~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~S---f~---~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~ 122 (191)
T cd01875 50 TVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSS---YE---NVRHKWHPEVCHHCPNVP-ILLVGTKKDLRND 122 (191)
T ss_pred EEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEEeChhhhcC
Confidence 3568899999999998777667789999999999987521 11 1111 1111221 3678 8999999998321
Q ss_pred CchHHHHHHH------HhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEI------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i------~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
....+.+.+. .++...+.+..+ .++++.+||++|.|+.+++.
T Consensus 123 ~~~~~~~~~~~~~~v~~~~~~~~a~~~~-----~~~~~e~SAk~g~~v~e~f~ 170 (191)
T cd01875 123 ADTLKKLKEQGQAPITPQQGGALAKQIH-----AVKYLECSALNQDGVKEVFA 170 (191)
T ss_pred hhhHHHHhhccCCCCCHHHHHHHHHHcC-----CcEEEEeCCCCCCCHHHHHH
Confidence 1000011100 012222333332 25899999999999998654
No 246
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.49 E-value=3.4e-13 Score=130.53 Aligned_cols=82 Identities=23% Similarity=0.265 Sum_probs=60.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
+|+++|.+++|||||+++|...... .....+.|.+.....+.+.+..+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-------------------------------v~~~~~tT~~~~~g~~~~~~~~i~ 50 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-------------------------------VAAYEFTTLTCVPGVLEYKGAKIQ 50 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-------------------------------ccCCCCccccceEEEEEECCeEEE
Confidence 6899999999999999999432110 111234555555556677889999
Q ss_pred EEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCC
Q 010278 165 ILDAPGHKS-------YVPNMISGASQADIGVLVISARKG 197 (514)
Q Consensus 165 liDtPGh~~-------f~~~~~~g~~~~D~ailVVda~~g 197 (514)
++||||+.+ +....+..++.+|++++|+|+...
T Consensus 51 l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 51 LLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred EEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 999999753 344566778899999999998764
No 247
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.49 E-value=1.6e-13 Score=117.94 Aligned_cols=107 Identities=23% Similarity=0.307 Sum_probs=75.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
+|+++|.+|+|||||+|+|+...... .....+.|.......+.+.+..+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~------------------------------~~~~~~~T~~~~~~~~~~~~~~~~ 50 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAK------------------------------VSNIPGTTRDPVYGQFEYNNKKFI 50 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSE------------------------------ESSSTTSSSSEEEEEEEETTEEEE
T ss_pred CEEEECCCCCCHHHHHHHHhcccccc------------------------------ccccccceeeeeeeeeeeceeeEE
Confidence 58999999999999999996321110 112245565554556777899999
Q ss_pred EEeCCCCcc---------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEee
Q 010278 165 ILDAPGHKS---------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 230 (514)
Q Consensus 165 liDtPGh~~---------f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK 230 (514)
|+||||..+ ......+.+..+|++++|+|+.... ..+..+.+..++ .+.| +++|+||
T Consensus 51 ~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~-------~~~~~~~~~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 51 LVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPI-------TEDDKNILRELK-NKKP-IILVLNK 116 (116)
T ss_dssp EEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHS-------HHHHHHHHHHHH-TTSE-EEEEEES
T ss_pred EEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCC-------CHHHHHHHHHHh-cCCC-EEEEEcC
Confidence 999999643 3445666678999999999988731 123455555565 6666 9999998
No 248
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.48 E-value=6.5e-13 Score=125.95 Aligned_cols=130 Identities=16% Similarity=0.241 Sum_probs=80.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEE--eCCe
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE--TETT 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~--~~~~ 161 (514)
++|+++|++++|||||+.+|... .... ....++.......+. ..+.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~--~~~~------------------------------t~~s~~~~~~~~~~~~~~~~~ 48 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTG--KYRS------------------------------TVTSIEPNVATFILNSEGKGK 48 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcC--CCCC------------------------------ccCcEeecceEEEeecCCCCc
Confidence 47999999999999999999432 1100 001111111222221 2467
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhc-CEEEEEEECCCCcccccccCCcchHHHHHHH----HH--cCCCeEEEEEeeccCC
Q 010278 162 RFTILDAPGHKSYVPNMISGASQA-DIGVLVISARKGEFETGFEKGGQTREHVMLA----KT--LGVTKLLLVVNKMDDH 234 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~-D~ailVVda~~g~~e~~~~~~~qt~e~l~~~----~~--~~vp~~IvviNK~D~~ 234 (514)
.+.|+|+|||.+|.......+..+ +++|+|||+..... .+ ..+.+.++-+ .. .++| +++|+||+|+.
T Consensus 49 ~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~--~~---~~~~~~l~~il~~~~~~~~~~p-vliv~NK~Dl~ 122 (203)
T cd04105 49 KFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQK--NL---KDVAEFLYDILTDLEKVKNKIP-VLIACNKQDLF 122 (203)
T ss_pred eEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchh--HH---HHHHHHHHHHHHHHhhccCCCC-EEEEecchhhc
Confidence 899999999999988888888888 99999999987510 00 1233333221 11 3788 99999999986
Q ss_pred CCCchHHHHHHHHhhhh
Q 010278 235 TVNWSKERYDEIESKMT 251 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l~ 251 (514)
.....+...+.+..++.
T Consensus 123 ~a~~~~~i~~~le~ei~ 139 (203)
T cd04105 123 TAKPAKKIKEQLEKELN 139 (203)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 54333223333333443
No 249
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.48 E-value=3.6e-13 Score=127.23 Aligned_cols=145 Identities=16% Similarity=0.187 Sum_probs=90.7
Q ss_pred EecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEEEEeC
Q 010278 89 IGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDA 168 (514)
Q Consensus 89 vG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~liDt 168 (514)
+|..++|||||+.++++ +...... ...-|++.......+......+.|+||
T Consensus 1 vG~~~vGKTsLi~r~~~--~~f~~~~---------------------------~~Tig~~~~~~~~~~~~~~~~l~iwDt 51 (200)
T smart00176 1 VGDGGTGKTTFVKRHLT--GEFEKKY---------------------------VATLGVEVHPLVFHTNRGPIRFNVWDT 51 (200)
T ss_pred CCCCCCCHHHHHHHHhc--CCCCCCC---------------------------CCceeEEEEEEEEEECCEEEEEEEEEC
Confidence 69999999999999852 2211000 000122222222222223568999999
Q ss_pred CCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--cCCCeEEEEEeeccCCCCCchHHHHHHH
Q 010278 169 PGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWSKERYDEI 246 (514)
Q Consensus 169 PGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~--~~vp~~IvviNK~D~~~~~~~~~~~~~i 246 (514)
||+++|...+....+.+|++|+|+|++.... |+ .....+..+.. .++| +|+|.||+|+....... +
T Consensus 52 ~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S---~~---~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v~~---~-- 119 (200)
T smart00176 52 AGQEKFGGLRDGYYIQGQCAIIMFDVTARVT---YK---NVPNWHRDLVRVCENIP-IVLCGNKVDVKDRKVKA---K-- 119 (200)
T ss_pred CCchhhhhhhHHHhcCCCEEEEEEECCChHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECcccccccCCH---H--
Confidence 9999998888777899999999999987632 11 12223333333 3678 89999999983211111 1
Q ss_pred HhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 247 ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 247 ~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.+ .+.+.. .++++.+||++|.|+.+++.
T Consensus 120 --~~-~~~~~~------~~~~~e~SAk~~~~v~~~F~ 147 (200)
T smart00176 120 --SI-TFHRKK------NLQYYDISAKSNYNFEKPFL 147 (200)
T ss_pred --HH-HHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 11 122222 46899999999999998754
No 250
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.47 E-value=1.6e-13 Score=121.26 Aligned_cols=144 Identities=17% Similarity=0.147 Sum_probs=91.5
Q ss_pred EEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccE-EEeeeEEEEe--CCeEEE
Q 010278 88 FIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKT-VEVGRAHFET--ETTRFT 164 (514)
Q Consensus 88 ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT-~~~~~~~~~~--~~~~i~ 164 (514)
++|++++|||||+++|....... .....| .+.....+.. ....+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~--------------------------------~~~~~t~~~~~~~~~~~~~~~~~~~ 48 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP--------------------------------EEYETTIIDFYSKTIEVDGKKVKLQ 48 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC--------------------------------cccccchhheeeEEEEECCEEEEEE
Confidence 58999999999999995433210 001111 1222222222 367899
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHH-----HHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010278 165 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-----HVMLAKTLGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 165 liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e-----~l~~~~~~~vp~~IvviNK~D~~~~~~~ 239 (514)
++|+||+..+..........+|++++|+|+..+... +... .+......++| +++++||+|+....
T Consensus 49 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~~~~~-- 118 (157)
T cd00882 49 IWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESF-------ENVKEWLLLILINKEGENIP-IILVGNKIDLPEER-- 118 (157)
T ss_pred EEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHH-------HHHHHHHHHHHHhhccCCCc-EEEEEecccccccc--
Confidence 999999999988877778899999999999986421 1221 22333445777 99999999994332
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
...... ....+... ...+++++|+.+|.|+.+++
T Consensus 119 ~~~~~~----~~~~~~~~-----~~~~~~~~s~~~~~~i~~~~ 152 (157)
T cd00882 119 VVSEEE----LAEQLAKE-----LGVPYFETSAKTGENVEELF 152 (157)
T ss_pred chHHHH----HHHHHHhh-----cCCcEEEEecCCCCChHHHH
Confidence 111111 01111111 24689999999999998753
No 251
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.47 E-value=3.7e-13 Score=129.35 Aligned_cols=151 Identities=20% Similarity=0.227 Sum_probs=89.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
.+|+++|.+|+|||||+++++ .+...... .+...+.........+......+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~--~~~~~~~~--------------------------~~~t~~~~~~~~~i~~~~~~~~l 52 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFT--SGEYDDHA--------------------------YDASGDDDTYERTVSVDGEESTL 52 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHh--cCCcCccC--------------------------cCCCccccceEEEEEECCEEEEE
Confidence 369999999999999999984 22211000 00001111111222233345779
Q ss_pred EEEeCCCCcchHHHHHHhhh-hcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCCCc
Q 010278 164 TILDAPGHKSYVPNMISGAS-QADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 164 ~liDtPGh~~f~~~~~~g~~-~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~~~ 238 (514)
.|+||||++.++... ... .+|++|+|+|+++... |+ ...+.+..+.. .++| +|+|.||+|+....
T Consensus 53 ~i~Dt~G~~~~~~~~--~~~~~ad~iilV~d~td~~S---~~---~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~~- 122 (221)
T cd04148 53 VVIDHWEQEMWTEDS--CMQYQGDAFVVVYSVTDRSS---FE---RASELRIQLRRNRQLEDRP-IILVGNKSDLARSR- 122 (221)
T ss_pred EEEeCCCcchHHHhH--HhhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEChhccccc-
Confidence 999999998554432 234 8999999999987521 11 22333333333 3578 99999999983211
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+... ++...+.... +++++++||++|.|+.++++
T Consensus 123 -~v~~----~~~~~~a~~~------~~~~~e~SA~~~~gv~~l~~ 156 (221)
T cd04148 123 -EVSV----QEGRACAVVF------DCKFIETSAGLQHNVDELLE 156 (221)
T ss_pred -eecH----HHHHHHHHHc------CCeEEEecCCCCCCHHHHHH
Confidence 1001 1111222222 35799999999999998754
No 252
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.46 E-value=6.6e-13 Score=122.97 Aligned_cols=158 Identities=16% Similarity=0.121 Sum_probs=94.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
++|+++|+.++|||+|+.+++. +...... ...-|.+.. ....+......+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~--~~f~~~~---------------------------~~Ti~~~~~-~~~~~~~~~v~l 51 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTS--NKFPTDY---------------------------IPTVFDNFS-ANVSVDGNTVNL 51 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhc--CCCCCCC---------------------------CCcceeeeE-EEEEECCEEEEE
Confidence 5799999999999999998842 2211100 000111111 111122234678
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcch-HHHHHHHHH--cCCCeEEEEEeeccCCCCCchH
Q 010278 164 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 164 ~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt-~e~l~~~~~--~~vp~~IvviNK~D~~~~~~~~ 240 (514)
.|+||+|+++|...+....+.+|++|||.|.+.... |+ .. ...+..++. .++| +|+|.||+|+.......
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~S---f~---~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~ 124 (176)
T cd04133 52 GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRAS---YE---NVLKKWVPELRHYAPNVP-IVLVGTKLDLRDDKQYL 124 (176)
T ss_pred EEEECCCCccccccchhhcCCCcEEEEEEEcCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEeChhhccChhhh
Confidence 999999999998877777899999999999986422 11 11 123333332 2577 99999999983210000
Q ss_pred -H---HHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 241 -E---RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 241 -~---~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. ...-..++...+.+..+. .+++.+||++|.|+.+++.
T Consensus 125 ~~~~~~~~v~~~~~~~~a~~~~~-----~~~~E~SAk~~~nV~~~F~ 166 (176)
T cd04133 125 ADHPGASPITTAQGEELRKQIGA-----AAYIECSSKTQQNVKAVFD 166 (176)
T ss_pred hhccCCCCCCHHHHHHHHHHcCC-----CEEEECCCCcccCHHHHHH
Confidence 0 000112223333343332 2699999999999998644
No 253
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.45 E-value=1.1e-12 Score=122.29 Aligned_cols=157 Identities=17% Similarity=0.151 Sum_probs=95.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeee-EEEEe-
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR-AHFET- 158 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~-~~~~~- 158 (514)
+...+|+++|..++|||||+.+++. +..... -..|+...+ ..+..
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~--~~f~~~-------------------------------~~pT~~~~~~~~~~~~ 49 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAK--DCFPEN-------------------------------YVPTVFENYTASFEID 49 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHh--CCCCCc-------------------------------cCCceeeeeEEEEEEC
Confidence 4567899999999999999999843 211100 011111110 12222
Q ss_pred -CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcch-HHHHHHHHHc--CCCeEEEEEeeccCC
Q 010278 159 -ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTL--GVTKLLLVVNKMDDH 234 (514)
Q Consensus 159 -~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt-~e~l~~~~~~--~vp~~IvviNK~D~~ 234 (514)
....+.|+||+|.++|........+.+|++|||.|.+.... |+ .. ...+..++.. ++| +|+|.||+|+.
T Consensus 50 ~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~S---f~---~~~~~w~~~i~~~~~~~p-iilVgNK~DL~ 122 (182)
T cd04172 50 TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---LD---SVLKKWKGEIQEFCPNTK-MLLVGCKSDLR 122 (182)
T ss_pred CEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHHCCCCC-EEEEeEChhhh
Confidence 34578999999999998777667789999999999876421 11 11 1222223322 567 89999999983
Q ss_pred CCCchHH------H-HHHHHhhhhhhhhhccCcccCCeeEEeeccccccc-cccccc
Q 010278 235 TVNWSKE------R-YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTRVD 283 (514)
Q Consensus 235 ~~~~~~~------~-~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~g-i~~l~~ 283 (514)
.. .... + ..-..++...+.++.+. ++++.+||++|.| +.+++.
T Consensus 123 ~~-~~~~~~~~~~~~~~v~~~~~~~~a~~~~~-----~~~~E~SAk~~~n~v~~~F~ 173 (182)
T cd04172 123 TD-LTTLVELSNHRQTPVSYDQGANMAKQIGA-----ATYIECSALQSENSVRDIFH 173 (182)
T ss_pred cC-hhhHHHHHhcCCCCCCHHHHHHHHHHcCC-----CEEEECCcCCCCCCHHHHHH
Confidence 21 0000 0 00011233444445442 4899999999998 998643
No 254
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.45 E-value=6.1e-13 Score=125.55 Aligned_cols=156 Identities=18% Similarity=0.243 Sum_probs=94.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe-CCe
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETT 161 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~-~~~ 161 (514)
+++|+++|.+|+|||||+|+|+..... .... .+ .+ ....|.... .+.. ...
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~-~~~~------------------~~-~~------~~~~t~~~~--~~~~~~~~ 52 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHE-EEGA------------------AP-TG------VVETTMKRT--PYPHPKFP 52 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCC-CCCc------------------cc-cC------ccccccCce--eeecCCCC
Confidence 368999999999999999999542110 0000 00 00 001111111 1111 134
Q ss_pred EEEEEeCCCCc-------chHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCC
Q 010278 162 RFTILDAPGHK-------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 234 (514)
Q Consensus 162 ~i~liDtPGh~-------~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~ 234 (514)
.++++||||.. .|++. .++..+|++++|.|.. . .......+..++..+.| +++|+||+|+.
T Consensus 53 ~l~l~DtpG~~~~~~~~~~~l~~--~~~~~~d~~l~v~~~~--~-------~~~d~~~~~~l~~~~~~-~ilV~nK~D~~ 120 (197)
T cd04104 53 NVTLWDLPGIGSTAFPPDDYLEE--MKFSEYDFFIIISSTR--F-------SSNDVKLAKAIQCMGKK-FYFVRTKVDRD 120 (197)
T ss_pred CceEEeCCCCCcccCCHHHHHHH--hCccCcCEEEEEeCCC--C-------CHHHHHHHHHHHHhCCC-EEEEEecccch
Confidence 78999999974 34332 2356789988885532 1 13556677777888888 99999999983
Q ss_pred CCCc---------hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccc--cccccccc
Q 010278 235 TVNW---------SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGL--MGLNMKTR 281 (514)
Q Consensus 235 ~~~~---------~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~--~G~gi~~l 281 (514)
..+. .+...+++.+.+...++..+.. ..+++++|+. .+.|+..+
T Consensus 121 ~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~---~p~v~~vS~~~~~~~~~~~l 175 (197)
T cd04104 121 LSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVS---EPPVFLVSNFDPSDYDFPKL 175 (197)
T ss_pred hhhhhccccccccHHHHHHHHHHHHHHHHHHcCCC---CCCEEEEeCCChhhcChHHH
Confidence 2221 1133556666666666655543 4589999998 56676654
No 255
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.44 E-value=1e-12 Score=123.98 Aligned_cols=138 Identities=19% Similarity=0.238 Sum_probs=91.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
++|+++|++|+|||||+|.|++...... .....+.|.......+.+.++.+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~-----------------------------~~~~~~~T~~~~~~~~~~~~~~i 51 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFES-----------------------------KLSASSVTKTCQKESAVWDGRRV 51 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccc-----------------------------ccCCCCcccccceeeEEECCeEE
Confidence 5899999999999999999965432211 11135777777777788899999
Q ss_pred EEEeCCCCcch-------HHHHHHh----hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-C---CCeEEEEE
Q 010278 164 TILDAPGHKSY-------VPNMISG----ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-G---VTKLLLVV 228 (514)
Q Consensus 164 ~liDtPGh~~f-------~~~~~~g----~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~-~---vp~~Ivvi 228 (514)
+||||||..+. ...+.+. ...+|++|+|+++.+ .. ...++.+..++.. | .+++|+++
T Consensus 52 ~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t-------~~d~~~l~~l~~~fg~~~~~~~ivv~ 123 (196)
T cd01852 52 NVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FT-------EEEEQAVETLQELFGEKVLDHTIVLF 123 (196)
T ss_pred EEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cC-------HHHHHHHHHHHHHhChHhHhcEEEEE
Confidence 99999996543 2222222 246899999999986 32 3556666666553 4 24588999
Q ss_pred eeccCCCCCchHHHHHHHHhhhhhhhhhcc
Q 010278 229 NKMDDHTVNWSKERYDEIESKMTPFLKASG 258 (514)
Q Consensus 229 NK~D~~~~~~~~~~~~~i~~~l~~~l~~~g 258 (514)
|++|....+--++.+......++.+++.+|
T Consensus 124 T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~ 153 (196)
T cd01852 124 TRGDDLEGGTLEDYLENSCEALKRLLEKCG 153 (196)
T ss_pred ECccccCCCcHHHHHHhccHHHHHHHHHhC
Confidence 999985432112222223356666677665
No 256
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=7.5e-13 Score=119.43 Aligned_cols=149 Identities=20% Similarity=0.298 Sum_probs=99.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEE----EE
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH----FE 157 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~----~~ 157 (514)
+...|+++|..++|||||+-++ -.+.+... .-.||...+.. ..
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rf--vk~~F~e~-------------------------------~e~TIGaaF~tktv~~~ 50 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRF--VKDQFHEN-------------------------------IEPTIGAAFLTKTVTVD 50 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhh--hhCccccc-------------------------------cccccccEEEEEEEEeC
Confidence 4578999999999999999665 33332211 12233333322 22
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEE--EEeeccCCC
Q 010278 158 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL--VVNKMDDHT 235 (514)
Q Consensus 158 ~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~Iv--viNK~D~~~ 235 (514)
....+|.|+||+|.++|-...--..+.|++||+|.|.++-.. |. +.+..+.-+....-|.+++ |-||+|+..
T Consensus 51 ~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~S---F~---~aK~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 51 DNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEES---FE---KAKNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred CcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHH---HH---HHHHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 234778899999999996555555688999999999987532 22 5566666666655565666 679999932
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
-.+..+ ++...+..+.| ..++.+||++|.|+.++
T Consensus 125 --~R~V~~----~ea~~yAe~~g------ll~~ETSAKTg~Nv~~i 158 (200)
T KOG0092|consen 125 --RREVEF----EEAQAYAESQG------LLFFETSAKTGENVNEI 158 (200)
T ss_pred --cccccH----HHHHHHHHhcC------CEEEEEecccccCHHHH
Confidence 122223 33344455444 58999999999999986
No 257
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.42 E-value=2.1e-12 Score=119.84 Aligned_cols=154 Identities=17% Similarity=0.144 Sum_probs=92.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEee-eEEEEeC--C
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG-RAHFETE--T 160 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~-~~~~~~~--~ 160 (514)
.+|+++|..++|||||+.++.. +..... .-.|+... ...+..+ .
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~--~~f~~~-------------------------------~~~t~~~~~~~~~~~~~~~ 48 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAK--DCYPET-------------------------------YVPTVFENYTASFEIDEQR 48 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CcCCCC-------------------------------cCCceEEEEEEEEEECCEE
Confidence 5799999999999999999843 211100 00111111 1122233 3
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcch-HHHHHHHHHc--CCCeEEEEEeeccCCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTL--GVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt-~e~l~~~~~~--~vp~~IvviNK~D~~~~~ 237 (514)
..+.|+||||++.|........+.+|++|+|.|.+.... |+ .. ..++..++.. ++| +|+|.||+|+...
T Consensus 49 ~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~S---f~---~~~~~w~~~i~~~~~~~~-iilVgnK~DL~~~- 120 (178)
T cd04131 49 IELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPET---LD---SVLKKWRGEIQEFCPNTK-VLLVGCKTDLRTD- 120 (178)
T ss_pred EEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhh---HH---HHHHHHHHHHHHHCCCCC-EEEEEEChhhhcC-
Confidence 568899999999997766666789999999999976421 11 11 2222333332 566 8999999998321
Q ss_pred chH-HHHH------HHHhhhhhhhhhccCcccCCeeEEeeccccccc-cccccc
Q 010278 238 WSK-ERYD------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTRVD 283 (514)
Q Consensus 238 ~~~-~~~~------~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~g-i~~l~~ 283 (514)
... ..+. -..++...+.++.+. .+++.+||++|.| +.+++.
T Consensus 121 ~~~~~~~~~~~~~~v~~~e~~~~a~~~~~-----~~~~E~SA~~~~~~v~~~F~ 169 (178)
T cd04131 121 LSTLMELSHQRQAPVSYEQGCAIAKQLGA-----EIYLECSAFTSEKSVRDIFH 169 (178)
T ss_pred hhHHHHHHhcCCCCCCHHHHHHHHHHhCC-----CEEEECccCcCCcCHHHHHH
Confidence 000 0000 011233334444432 3799999999995 988643
No 258
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.41 E-value=4.1e-12 Score=122.52 Aligned_cols=157 Identities=17% Similarity=0.120 Sum_probs=95.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeee-EEEEe--
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR-AHFET-- 158 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~-~~~~~-- 158 (514)
....|+++|..++|||+|+.+++. +..... ...|+...+ ..+..
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~--~~F~~~-------------------------------y~pTi~~~~~~~i~~~~ 58 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAK--DCYPET-------------------------------YVPTVFENYTAGLETEE 58 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhc--CCCCCC-------------------------------cCCceeeeeEEEEEECC
Confidence 457899999999999999998842 221110 001111100 11222
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--cCCCeEEEEEeeccCCCC
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~--~~vp~~IvviNK~D~~~~ 236 (514)
....+.|+||+|.++|........+.+|++|||.|.+.... |+ .-....+..+.. -++| +|+|.||+|+...
T Consensus 59 ~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~S---f~--~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~ 132 (232)
T cd04174 59 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPET---VD--SALKKWKAEIMDYCPSTR-ILLIGCKTDLRTD 132 (232)
T ss_pred EEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHH---HH--HHHHHHHHHHHHhCCCCC-EEEEEECcccccc
Confidence 34678999999999998777777889999999999986521 11 001112233332 2567 8999999998321
Q ss_pred CchHH-------HHHHHHhhhhhhhhhccCcccCCeeEEeecccccc-ccccccc
Q 010278 237 NWSKE-------RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRVD 283 (514)
Q Consensus 237 ~~~~~-------~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~-gi~~l~~ 283 (514)
.... ...-..++...+.+++++ .+++.+||++|. |+.+++.
T Consensus 133 -~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~-----~~~~EtSAktg~~~V~e~F~ 181 (232)
T cd04174 133 -LSTLMELSNQKQAPISYEQGCALAKQLGA-----EVYLECSAFTSEKSIHSIFR 181 (232)
T ss_pred -cchhhhhccccCCcCCHHHHHHHHHHcCC-----CEEEEccCCcCCcCHHHHHH
Confidence 0000 000112234445555543 268999999998 7998755
No 259
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.38 E-value=2.3e-12 Score=120.47 Aligned_cols=155 Identities=15% Similarity=0.199 Sum_probs=89.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC--Ce
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~--~~ 161 (514)
.+|+++|..++|||||+++|.. +..... ....+.... ...+... ..
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~--~~~~~~-----------------------------~~~t~~~~~-~~~~~~~~~~~ 49 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTL--GEFPEE-----------------------------YHPTVFENY-VTDCRVDGKPV 49 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCcc-----------------------------cCCcccceE-EEEEEECCEEE
Confidence 4799999999999999999842 221100 000000000 1112222 34
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHHc--CCCeEEEEEeeccCCCCCc
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~-e~l~~~~~~--~vp~~IvviNK~D~~~~~~ 238 (514)
.+.++||||++.|....-..++.+|++|+|.|.+.... |+ ... ..+..++.. .+| +|++.||+|+...+.
T Consensus 50 ~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilvgnK~Dl~~~~~ 122 (187)
T cd04129 50 QLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDS---LE---NVRTKWIEEVRRYCPNVP-VILVGLKKDLRQDAV 122 (187)
T ss_pred EEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEeeChhhhhCcc
Confidence 67899999998886544345678999999999876421 11 111 123333322 577 999999999832111
Q ss_pred hH-----HHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 239 SK-----ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 239 ~~-----~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. .++.. .++...+.+.++. .+++.+||++|.|+.++++
T Consensus 123 ~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~f~ 166 (187)
T cd04129 123 AKEEYRTQRFVP-IQQGKRVAKEIGA-----KKYMECSALTGEGVDDVFE 166 (187)
T ss_pred cccccccCCcCC-HHHHHHHHHHhCC-----cEEEEccCCCCCCHHHHHH
Confidence 10 01100 1122233444442 4799999999999998654
No 260
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.38 E-value=4.8e-12 Score=121.36 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=92.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEee-eEEEEeC--C
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG-RAHFETE--T 160 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~-~~~~~~~--~ 160 (514)
..|+++|..++|||+|+.++.. +.... +- -.|+... ...+..+ .
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~--~~f~~-----------------------------~y--~pTi~~~~~~~~~~~~~~ 48 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAK--DAYPG-----------------------------SY--VPTVFENYTASFEIDKRR 48 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCC-----------------------------cc--CCccccceEEEEEECCEE
Confidence 5799999999999999999843 21110 00 0011100 1123333 3
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHH-HHHH--cCCCeEEEEEeeccCCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKT--LGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~-~~~~--~~vp~~IvviNK~D~~~~~ 237 (514)
..+.|+||+|++.|...+-.....+|++|+|+|.+.... |+ .....+. .+.. .++| +|+|.||+|+...
T Consensus 49 v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~S---f~---~i~~~w~~~~~~~~~~~p-iiLVgnK~DL~~~- 120 (222)
T cd04173 49 IELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPET---LD---SVLKKWQGETQEFCPNAK-VVLVGCKLDMRTD- 120 (222)
T ss_pred EEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEEECcccccc-
Confidence 568899999999998877777889999999999987521 11 1111111 1222 3577 9999999998321
Q ss_pred chHHHHHHH---------HhhhhhhhhhccCcccCCeeEEeeccccccc-cccccc
Q 010278 238 WSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i---------~~~l~~~l~~~g~~~~~~~~iipiSa~~G~g-i~~l~~ 283 (514)
......+ .++-..+.+++| .++++.+||+++.| +.+++.
T Consensus 121 --~~~~~~~~~~~~~pIs~e~g~~~ak~~~-----~~~y~E~SAk~~~~~V~~~F~ 169 (222)
T cd04173 121 --LATLRELSKQRLIPVTHEQGTVLAKQVG-----AVSYVECSSRSSERSVRDVFH 169 (222)
T ss_pred --hhhhhhhhhccCCccCHHHHHHHHHHcC-----CCEEEEcCCCcCCcCHHHHHH
Confidence 1111110 112223333433 24899999999985 988654
No 261
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.37 E-value=8.9e-12 Score=119.23 Aligned_cols=153 Identities=14% Similarity=0.180 Sum_probs=92.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
....++|+++|+.|+|||||+++++ .|...... ....|..+..........
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~--~~~~~~~~---------------------------~~t~~~~~~~~~~~~~~~ 56 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHL--TGEFEKKY---------------------------IPTLGVEVHPLKFYTNCG 56 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHH--hCCCCCCC---------------------------CCccceEEEEEEEEECCe
Confidence 4456899999999999999998764 23211100 000122222222222334
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH--HcCCCeEEEEEeeccCCCCC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK--TLGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~--~~~vp~~IvviNK~D~~~~~ 237 (514)
...+.++||||+++|...+......+|++|+|+|.+.... |. .....+..+. ..++| ++++.||+|+....
T Consensus 57 ~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~-i~lv~nK~Dl~~~~ 129 (215)
T PTZ00132 57 PICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRIT---YK---NVPNWHRDIVRVCENIP-IVLVGNKVDVKDRQ 129 (215)
T ss_pred EEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECccCcccc
Confidence 5788999999999987666666678999999999987532 10 1111122221 13577 88899999983211
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
... + ...+.+.. .+.++++||++|.|+.+.+
T Consensus 130 ~~~----~----~~~~~~~~------~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 130 VKA----R----QITFHRKK------NLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred CCH----H----HHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 111 1 11222322 3578999999999998753
No 262
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.37 E-value=6.4e-12 Score=114.11 Aligned_cols=150 Identities=17% Similarity=0.238 Sum_probs=95.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
.|+++|..++|||||+++|.. +..... .....|.........+......+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~--~~~~~~---------------------------~~~t~~~~~~~~~~~~~~~~~~l~ 51 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLIN--GEFPEN---------------------------YIPTIGIDSYSKEVSIDGKPVNLE 51 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--SSTTSS---------------------------SETTSSEEEEEEEEEETTEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHh--hccccc---------------------------cccccccccccccccccccccccc
Confidence 489999999999999999843 221110 001123333333333333446789
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCCchHH
Q 010278 165 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWSKE 241 (514)
Q Consensus 165 liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK~D~~~~~~~~~ 241 (514)
|+|++|+++|........+.+|++|+|.|.+.... |+ .....+..+... ++| ++|+.||.|+.. ..+-
T Consensus 52 i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S---~~---~~~~~~~~i~~~~~~~~~-iivvg~K~D~~~--~~~v 122 (162)
T PF00071_consen 52 IWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEES---FE---NLKKWLEEIQKYKPEDIP-IIVVGNKSDLSD--EREV 122 (162)
T ss_dssp EEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHH---HH---THHHHHHHHHHHSTTTSE-EEEEEETTTGGG--GSSS
T ss_pred ccccccccccccccccccccccccccccccccccc---cc---cccccccccccccccccc-ceeeeccccccc--cccc
Confidence 99999999998777677889999999999887421 21 222333333322 355 899999999832 1111
Q ss_pred HHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 242 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 242 ~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
.. ++...+.++.+ .+++.+|++++.|+.+++
T Consensus 123 ~~----~~~~~~~~~~~------~~~~e~Sa~~~~~v~~~f 153 (162)
T PF00071_consen 123 SV----EEAQEFAKELG------VPYFEVSAKNGENVKEIF 153 (162)
T ss_dssp CH----HHHHHHHHHTT------SEEEEEBTTTTTTHHHHH
T ss_pred hh----hHHHHHHHHhC------CEEEEEECCCCCCHHHHH
Confidence 11 23333444443 589999999999999863
No 263
>COG2262 HflX GTPases [General function prediction only]
Probab=99.36 E-value=2.3e-12 Score=129.49 Aligned_cols=149 Identities=18% Similarity=0.148 Sum_probs=97.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
....+.|+++|-.|+|||||+|+|........+ .-=.|.+.....+.+.
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d-------------------------------~LFATLdpttR~~~l~ 237 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVAD-------------------------------QLFATLDPTTRRIELG 237 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccc-------------------------------cccccccCceeEEEeC
Confidence 456789999999999999999999422111000 0112334444445555
Q ss_pred -CeEEEEEeCCCCcch--------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEE
Q 010278 160 -TTRFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLV 227 (514)
Q Consensus 160 -~~~i~liDtPGh~~f--------~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~Ivv 227 (514)
++.+.|-||-|.-+- .+.++..+..||+.++||||+++... .|.......+..+ ..| +|+|
T Consensus 238 ~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~------~~~~~v~~vL~el~~~~~p-~i~v 310 (411)
T COG2262 238 DGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEIL------EKLEAVEDVLAEIGADEIP-IILV 310 (411)
T ss_pred CCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHH------HHHHHHHHHHHHcCCCCCC-EEEE
Confidence 689999999996543 44455556789999999999987432 3444455556665 456 8999
Q ss_pred EeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 228 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 228 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+||+|+. .+.. ....+. .. ....|++||++|.|++.|.+
T Consensus 311 ~NKiD~~--~~~~-----~~~~~~----~~------~~~~v~iSA~~~~gl~~L~~ 349 (411)
T COG2262 311 LNKIDLL--EDEE-----ILAELE----RG------SPNPVFISAKTGEGLDLLRE 349 (411)
T ss_pred Eeccccc--Cchh-----hhhhhh----hc------CCCeEEEEeccCcCHHHHHH
Confidence 9999983 2111 111111 10 11489999999999988644
No 264
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.36 E-value=2.8e-12 Score=124.15 Aligned_cols=151 Identities=19% Similarity=0.247 Sum_probs=87.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
-+....|+++|-||+|||||+++|......+.. |+| .|.........++
T Consensus 193 LKsiadvGLVG~PNAGKSTLL~als~AKpkVa~-------------------YaF------------TTL~P~iG~v~yd 241 (366)
T KOG1489|consen 193 LKSIADVGLVGFPNAGKSTLLNALSRAKPKVAH-------------------YAF------------TTLRPHIGTVNYD 241 (366)
T ss_pred eeeecccceecCCCCcHHHHHHHhhccCCcccc-------------------cce------------eeeccccceeecc
Confidence 455678999999999999999999544333221 222 1222211222333
Q ss_pred C-eEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH--------Hc-CCC
Q 010278 160 T-TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK--------TL-GVT 222 (514)
Q Consensus 160 ~-~~i~liDtPGh~~-------f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~--------~~-~vp 222 (514)
+ .+|++-|.||..+ .--..++-+..|+..++|||.+.+-. ..-.+++.++. .+ ..|
T Consensus 242 df~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~-------~~p~~~~~lL~~ELe~yek~L~~rp 314 (366)
T KOG1489|consen 242 DFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQL-------RNPWQQLQLLIEELELYEKGLADRP 314 (366)
T ss_pred ccceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCccc-------CCHHHHHHHHHHHHHHHhhhhccCc
Confidence 3 3499999999421 12223344566899999999987611 01112222211 12 345
Q ss_pred eEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 223 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 223 ~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.+||+||+|++.. .+ ...+++...|+ +..++|+||++|+|+.+++.
T Consensus 315 -~liVaNKiD~~ea--e~----~~l~~L~~~lq--------~~~V~pvsA~~~egl~~ll~ 360 (366)
T KOG1489|consen 315 -ALIVANKIDLPEA--EK----NLLSSLAKRLQ--------NPHVVPVSAKSGEGLEELLN 360 (366)
T ss_pred -eEEEEeccCchhH--HH----HHHHHHHHHcC--------CCcEEEeeeccccchHHHHH
Confidence 7789999998321 11 11233332222 23599999999999988543
No 265
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.34 E-value=9.7e-12 Score=118.77 Aligned_cols=159 Identities=18% Similarity=0.274 Sum_probs=104.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeee-EEEE
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR-AHFE 157 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~-~~~~ 157 (514)
.++++.||.++|..|+|||+|+|+|......-.. .-|++.+... ....
T Consensus 35 ~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~-------------------------------~vg~~t~~~~~~~~~ 83 (296)
T COG3596 35 TEKEPVNVLLMGATGAGKSSLINALFQGEVKEVS-------------------------------KVGVGTDITTRLRLS 83 (296)
T ss_pred cccCceeEEEecCCCCcHHHHHHHHHhccCceee-------------------------------ecccCCCchhhHHhh
Confidence 3678899999999999999999999532221000 0111111111 1123
Q ss_pred eCCeEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCC-CeEEEEEe
Q 010278 158 TETTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV-TKLLLVVN 229 (514)
Q Consensus 158 ~~~~~i~liDtPGh~~-------f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~v-p~~IvviN 229 (514)
+.+..++|+||||..+ |......-+...|.+++++++.+... +.....++.....+. .+++++||
T Consensus 84 ~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL-------~~d~~f~~dVi~~~~~~~~i~~Vt 156 (296)
T COG3596 84 YDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRAL-------GTDEDFLRDVIILGLDKRVLFVVT 156 (296)
T ss_pred ccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccc-------cCCHHHHHHHHHhccCceeEEEEe
Confidence 4567899999999766 66777777889999999999998753 344555555555554 55999999
Q ss_pred eccCCCC--CchH----------HHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 230 KMDDHTV--NWSK----------ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 230 K~D~~~~--~~~~----------~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
..|+... +|+. +..++-.+.+.+++.. --|++..|+..++|+..++
T Consensus 157 Q~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~-------V~pV~~~~~r~~wgl~~l~ 214 (296)
T COG3596 157 QADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE-------VKPVVAVSGRLPWGLKELV 214 (296)
T ss_pred hhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh-------cCCeEEeccccCccHHHHH
Confidence 9998533 4532 2222223333333333 2488999999999998863
No 266
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=2.4e-11 Score=109.79 Aligned_cols=152 Identities=19% Similarity=0.256 Sum_probs=102.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeee----EE
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR----AH 155 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~----~~ 155 (514)
..+...|+++|.-++|||+|+.+++|..-. + .-+-||-+.+ .+
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd--~-------------------------------~YqATIGiDFlskt~~ 65 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFD--N-------------------------------TYQATIGIDFLSKTMY 65 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhc--c-------------------------------cccceeeeEEEEEEEE
Confidence 455688999999999999999999776421 1 0223333333 33
Q ss_pred EEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCC-cccccccCCcchHHHHHHHHHc-CC--CeEEEEEeec
Q 010278 156 FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG-EFETGFEKGGQTREHVMLAKTL-GV--TKLLLVVNKM 231 (514)
Q Consensus 156 ~~~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g-~~e~~~~~~~qt~e~l~~~~~~-~v--p~~IvviNK~ 231 (514)
++-...++.||||+|+++|....-+.++.+.+||+|.|.++- .|+ +|...+.-++.. |- ..+++|-||-
T Consensus 66 l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe-------~t~kWi~dv~~e~gs~~viI~LVGnKt 138 (221)
T KOG0094|consen 66 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFE-------NTSKWIEDVRRERGSDDVIIFLVGNKT 138 (221)
T ss_pred EcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHH-------HHHHHHHHHHhccCCCceEEEEEcccc
Confidence 333456789999999999988888888999999999997653 332 666666555554 32 2256677999
Q ss_pred cCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 232 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 232 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|+ .+-. .+. .++=....+++ ++-|+.+||+.|.|+.+++.
T Consensus 139 DL--~dkr--qvs--~eEg~~kAkel------~a~f~etsak~g~NVk~lFr 178 (221)
T KOG0094|consen 139 DL--SDKR--QVS--IEEGERKAKEL------NAEFIETSAKAGENVKQLFR 178 (221)
T ss_pred cc--cchh--hhh--HHHHHHHHHHh------CcEEEEecccCCCCHHHHHH
Confidence 99 4311 111 11111233444 35799999999999998654
No 267
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.32 E-value=2.7e-11 Score=106.33 Aligned_cols=152 Identities=17% Similarity=0.193 Sum_probs=103.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+..+|-|+|.-||||||++.+|+.... + .. .-|.-......+.++
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~---~---------------------------~i----~pt~gf~Iktl~~~~ 59 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDT---D---------------------------TI----SPTLGFQIKTLEYKG 59 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCc---c---------------------------cc----CCccceeeEEEEecc
Confidence 3478999999999999999999943221 0 01 112222234567789
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH----HHcCCCeEEEEEeeccCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~----~~~~vp~~IvviNK~D~~~~ 236 (514)
+.++++|..|+..+..-+-.....+|+.|+|||..+..- -.++..++.-+ +..|.| ++|+.||.|+.++
T Consensus 60 ~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r------~~e~~~~L~~lL~eerlaG~~-~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 60 YTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMR------MQECKQELTELLVEERLAGAP-LLVLANKQDLPGA 132 (185)
T ss_pred eEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHH------HHHHHHHHHHHHhhhhhcCCc-eEEEEecCcCccc
Confidence 999999999998888888888889999999999976421 01233333222 234777 8999999999532
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
.+.+....+ -.+..++++. .++++-+||.+|+++.+-
T Consensus 133 -l~~~~i~~~-~~L~~l~ks~------~~~l~~cs~~tge~l~~g 169 (185)
T KOG0073|consen 133 -LSLEEISKA-LDLEELAKSH------HWRLVKCSAVTGEDLLEG 169 (185)
T ss_pred -cCHHHHHHh-hCHHHhcccc------CceEEEEeccccccHHHH
Confidence 233333222 2344444444 568999999999988764
No 268
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.32 E-value=5.8e-12 Score=115.67 Aligned_cols=114 Identities=17% Similarity=0.237 Sum_probs=66.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEE---eC
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE---TE 159 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~---~~ 159 (514)
...|.++|..|||||+|+.+|.+. ..... +|.-.....+. ..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~--~~~~T---------------------------------~tS~e~n~~~~~~~~~ 47 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNG--KTVPT---------------------------------VTSMENNIAYNVNNSK 47 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHS--S---B------------------------------------SSEEEECCGSSTC
T ss_pred CceEEEEcCCCCCHHHHHHHHhcC--CcCCe---------------------------------eccccCCceEEeecCC
Confidence 468999999999999999999543 11000 00001111111 14
Q ss_pred CeEEEEEeCCCCcchHHHHHHh---hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH------cCCCeEEEEEee
Q 010278 160 TTRFTILDAPGHKSYVPNMISG---ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNK 230 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g---~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~------~~vp~~IvviNK 230 (514)
+..+.+||+|||.+.....+.. ...+-++|+|||+..- ...+ ..+-|+|+-+.. .++| ++|++||
T Consensus 48 ~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~--~~~~---~~~Ae~Ly~iL~~~~~~~~~~p-iLIacNK 121 (181)
T PF09439_consen 48 GKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTD--QKEL---RDVAEYLYDILSDTEVQKNKPP-ILIACNK 121 (181)
T ss_dssp GTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTH--HHHH---HHHHHHHHHHHHHHHCCTT--E-EEEEEE-
T ss_pred CCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccc--hhhH---HHHHHHHHHHHHhhhhccCCCC-EEEEEeC
Confidence 5689999999999987766665 7789999999999741 1111 123333332211 2455 9999999
Q ss_pred ccCCCCC
Q 010278 231 MDDHTVN 237 (514)
Q Consensus 231 ~D~~~~~ 237 (514)
.|+..+.
T Consensus 122 ~Dl~~A~ 128 (181)
T PF09439_consen 122 QDLFTAK 128 (181)
T ss_dssp TTSTT--
T ss_pred ccccccC
Confidence 9996543
No 269
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=7.3e-12 Score=115.13 Aligned_cols=156 Identities=15% Similarity=0.180 Sum_probs=100.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
......|.++|..++|||.|+-++. .+..... +. .-+-++.....++.+
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~--d~~f~~~--------------------~~---------sTiGIDFk~kti~l~ 57 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFS--DDSFNTS--------------------FI---------STIGIDFKIKTIELD 57 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhh--hccCcCC--------------------cc---------ceEEEEEEEEEEEeC
Confidence 3467899999999999999998773 2221110 00 112222222333444
Q ss_pred --CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010278 160 --TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 160 --~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~ 237 (514)
...+.+|||.|+++|...+-+.++.|+.++||+|...... |+.-..+.+.+..-...+++ .++|-||+|+..
T Consensus 58 g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~S---feni~~W~~~I~e~a~~~v~-~~LvGNK~D~~~-- 131 (207)
T KOG0078|consen 58 GKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKS---FENIRNWIKNIDEHASDDVV-KILVGNKCDLEE-- 131 (207)
T ss_pred CeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHH---HHHHHHHHHHHHhhCCCCCc-EEEeeccccccc--
Confidence 4567899999999999998888999999999999876422 21001223333333334788 789999999832
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
..+--.+.-+++..++| ++|+.+||++|.||.+.+
T Consensus 132 ----~R~V~~e~ge~lA~e~G------~~F~EtSAk~~~NI~eaF 166 (207)
T KOG0078|consen 132 ----KRQVSKERGEALAREYG------IKFFETSAKTNFNIEEAF 166 (207)
T ss_pred ----cccccHHHHHHHHHHhC------CeEEEccccCCCCHHHHH
Confidence 11112233334445554 689999999999999853
No 270
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.3e-11 Score=111.89 Aligned_cols=155 Identities=19% Similarity=0.172 Sum_probs=104.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.....|.++|..|+|||-|+-++ ..+....+. ..-|-++.....++.++
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf--~~~~f~e~~-----------------------------~sTIGVDf~~rt~e~~g 55 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRF--KDDTFTESY-----------------------------ISTIGVDFKIRTVELDG 55 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhh--ccCCcchhh-----------------------------cceeeeEEEEEEeeecc
Confidence 45678999999999999999776 444333221 12233444444555554
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 161 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 161 --~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
.++.+|||+|+++|...+.+..+.|+++|+|.|.+.-. .|+.-+++.+-+..-...++| .++|-||+|+...
T Consensus 56 k~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~---SF~~v~~Wi~Ei~~~~~~~v~-~lLVGNK~Dl~~~-- 129 (205)
T KOG0084|consen 56 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQE---SFNNVKRWIQEIDRYASENVP-KLLVGNKCDLTEK-- 129 (205)
T ss_pred eEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHH---HhhhHHHHHHHhhhhccCCCC-eEEEeeccccHhh--
Confidence 56899999999999998988899999999999988742 233223444444444445788 6789999998321
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCee-EEeecccccccccccc
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQ-FLPISGLMGLNMKTRV 282 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~-iipiSa~~G~gi~~l~ 282 (514)
..-.. ++.+.+..+++ +| ++++||+.+.|+++.+
T Consensus 130 ~~v~~----~~a~~fa~~~~------~~~f~ETSAK~~~NVe~~F 164 (205)
T KOG0084|consen 130 RVVST----EEAQEFADELG------IPIFLETSAKDSTNVEDAF 164 (205)
T ss_pred eecCH----HHHHHHHHhcC------CcceeecccCCccCHHHHH
Confidence 11111 22233444443 45 9999999999998853
No 271
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.30 E-value=1.8e-11 Score=119.62 Aligned_cols=153 Identities=20% Similarity=0.280 Sum_probs=95.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
...+.|.|+|+||+|||||+++|......+. .|.| .|-.+...+|+.+.
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA-------------------~YPF------------TTK~i~vGhfe~~~ 214 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVA-------------------PYPF------------TTKGIHVGHFERGY 214 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccC-------------------CCCc------------cccceeEeeeecCC
Confidence 3568999999999999999999933222211 1222 23333446788888
Q ss_pred eEEEEEeCCCCcch--------HHHHHHhh-hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeec
Q 010278 161 TRFTILDAPGHKSY--------VPNMISGA-SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 231 (514)
Q Consensus 161 ~~i~liDtPGh~~f--------~~~~~~g~-~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~ 231 (514)
.++.+|||||.-+- -++.+.++ ...+++|+++|++.. .|+.++.|..-.-.+-..++.| +++|+||+
T Consensus 215 ~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~---cgy~lE~Q~~L~~eIk~~f~~p-~v~V~nK~ 290 (346)
T COG1084 215 LRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSET---CGYSLEEQISLLEEIKELFKAP-IVVVINKI 290 (346)
T ss_pred ceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccc---cCCCHHHHHHHHHHHHHhcCCC-eEEEEecc
Confidence 89999999995443 33334444 478999999999864 3444444433332333334656 99999999
Q ss_pred cCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 232 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 232 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
|. .+ .+.++++... +...|. ...+-+|+..+.+++.+
T Consensus 291 D~--~~--~e~~~~~~~~----~~~~~~-----~~~~~~~~~~~~~~d~~ 327 (346)
T COG1084 291 DI--AD--EEKLEEIEAS----VLEEGG-----EEPLKISATKGCGLDKL 327 (346)
T ss_pred cc--cc--hhHHHHHHHH----HHhhcc-----ccccceeeeehhhHHHH
Confidence 98 32 3344444433 333222 22456677777777653
No 272
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.29 E-value=1.8e-11 Score=115.27 Aligned_cols=109 Identities=14% Similarity=0.115 Sum_probs=66.1
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHH-HHHHHHH--cCCCeEEEEEeeccCCCC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e-~l~~~~~--~~vp~~IvviNK~D~~~~ 236 (514)
...+.|+||+|.+++.+. ...+.+|++|+|.|.+.... |+ .... .+..++. -++| +|+|.||+|+...
T Consensus 65 ~v~l~iwDTaG~~~~~~~--~~~~~ad~iilv~d~t~~~S---f~---~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~ 135 (195)
T cd01873 65 SVSLRLWDTFGDHDKDRR--FAYGRSDVVLLCFSIASPNS---LR---NVKTMWYPEIRHFCPRVP-VILVGCKLDLRYA 135 (195)
T ss_pred EEEEEEEeCCCChhhhhc--ccCCCCCEEEEEEECCChhH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEchhcccc
Confidence 467899999999765322 24678999999999876521 11 1211 2223332 2577 8999999998421
Q ss_pred CchHH-------------HHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKE-------------RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~-------------~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+-... ...-..++...+.++.| ++++.+||++|.|+.++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~------~~~~E~SAkt~~~V~e~F~ 189 (195)
T cd01873 136 DLDEVNRARRPLARPIKNADILPPETGRAVAKELG------IPYYETSVVTQFGVKDVFD 189 (195)
T ss_pred ccchhhhcccccccccccCCccCHHHHHHHHHHhC------CEEEEcCCCCCCCHHHHHH
Confidence 00000 00001223334444443 5899999999999998643
No 273
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.29 E-value=2.1e-11 Score=110.92 Aligned_cols=146 Identities=18% Similarity=0.208 Sum_probs=85.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC--e
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~--~ 161 (514)
++|+++|..++|||||+.+++. +..... ..+. .+. . ...+..++ .
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~--~~f~~~------------------------~~~~---~~~-~---~~~i~~~~~~~ 47 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLT--GSYVQL------------------------ESPE---GGR-F---KKEVLVDGQSH 47 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--CCCCCC------------------------CCCC---ccc-e---EEEEEECCEEE
Confidence 3699999999999999988743 211100 0000 010 0 11233344 5
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCCC
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~~ 237 (514)
.+.|+||+|.+.+ ...+.+|++++|.|.++... |+ .....+..+.. .++| ++++.||+|+...+
T Consensus 48 ~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~s---f~---~~~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~~ 115 (158)
T cd04103 48 LLLIRDEGGAPDA-----QFASWVDAVIFVFSLENEAS---FQ---TVYNLYHQLSSYRNISEIP-LILVGTQDAISESN 115 (158)
T ss_pred EEEEEECCCCCch-----hHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEeeHHHhhhcC
Confidence 6889999999763 22467899999999887532 11 11223333332 2467 89999999973111
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+.... .++...+.++.+ .++++.+||++|.||.+++.
T Consensus 116 --~~~v~--~~~~~~~~~~~~-----~~~~~e~SAk~~~~i~~~f~ 152 (158)
T cd04103 116 --PRVID--DARARQLCADMK-----RCSYYETCATYGLNVERVFQ 152 (158)
T ss_pred --CcccC--HHHHHHHHHHhC-----CCcEEEEecCCCCCHHHHHH
Confidence 00010 111222222221 36899999999999998643
No 274
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.28 E-value=1.3e-11 Score=120.11 Aligned_cols=86 Identities=22% Similarity=0.285 Sum_probs=61.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
..-+|+++|.|++|||||+++|......+. .|.| .|......-+++++-
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva-------------------~y~F------------TTl~~VPG~l~Y~ga 110 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVA-------------------DYPF------------TTLEPVPGMLEYKGA 110 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCcccc-------------------ccCc------------eecccccceEeecCc
Confidence 457899999999999999999932221110 0111 233344455888999
Q ss_pred EEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCc
Q 010278 162 RFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGE 198 (514)
Q Consensus 162 ~i~liDtPGh~~-------f~~~~~~g~~~~D~ailVVda~~g~ 198 (514)
+|.|+|+||.-. .-+..++.++.||.+++|+|+....
T Consensus 111 ~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~ 154 (365)
T COG1163 111 QIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDP 154 (365)
T ss_pred eEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCCh
Confidence 999999999422 1355677789999999999998654
No 275
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.5e-11 Score=110.25 Aligned_cols=151 Identities=20% Similarity=0.232 Sum_probs=100.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe--CC
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ET 160 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~--~~ 160 (514)
...+.++|..++|||.|+-++. ...... ..| .-+-++.+...+.. ..
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~--~krF~~----------------------~hd-------~TiGvefg~r~~~id~k~ 54 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFT--DKRFQP----------------------VHD-------LTIGVEFGARMVTIDGKQ 54 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHh--ccCccc----------------------ccc-------ceeeeeeceeEEEEcCce
Confidence 4678999999999999996662 211110 000 11223333333444 44
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK~D~~~~~ 237 (514)
.++.++||+||+.|..-+-+..+.+-+||||.|.+.-.. |. ....+|.-++++ +.. ++++-||+|+..
T Consensus 55 IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~s---F~---hL~~wL~D~rq~~~~Nmv-ImLiGNKsDL~~-- 125 (216)
T KOG0098|consen 55 IKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRES---FN---HLTSWLEDARQHSNENMV-IMLIGNKSDLEA-- 125 (216)
T ss_pred EEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhh---HH---HHHHHHHHHHHhcCCCcE-EEEEcchhhhhc--
Confidence 578999999999999988888999999999999876432 22 233334444554 344 667779999931
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+.+-..++-+.+.++.|+ .+..+||++++|+++.+.
T Consensus 126 ----rR~Vs~EEGeaFA~ehgL------ifmETSakt~~~VEEaF~ 161 (216)
T KOG0098|consen 126 ----RREVSKEEGEAFAREHGL------IFMETSAKTAENVEEAFI 161 (216)
T ss_pred ----cccccHHHHHHHHHHcCc------eeehhhhhhhhhHHHHHH
Confidence 223334566667777664 688999999999998654
No 276
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.26 E-value=3.6e-11 Score=114.08 Aligned_cols=202 Identities=13% Similarity=0.157 Sum_probs=116.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcch--------hHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEE
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDD--------RTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVE 150 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~--------~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~ 150 (514)
..+++..|.++|..||||||++.+|......-.. ..+.+..=.+-..=|....|..+|.....+...||+..
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 4567789999999999999999999544321100 00000000000011233344445555556666777655
Q ss_pred eeeEEEE-----------eCCeEEEEEeCCCCcch--------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHH
Q 010278 151 VGRAHFE-----------TETTRFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 211 (514)
Q Consensus 151 ~~~~~~~-----------~~~~~i~liDtPGh~~f--------~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e 211 (514)
+..+... .+...+.||||||+..- +-+-..+.+.+-++++|||.........|. .....
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFM--SNMlY 172 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFM--SNMLY 172 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHH--HHHHH
Confidence 4432211 12456899999997543 111122246788999999987654433333 34444
Q ss_pred HHHHHHHcCCCeEEEEEeeccCCCCCc------hHHHHHHHHhhh-----hhhhhhccCc---ccCCeeEEeeccccccc
Q 010278 212 HVMLAKTLGVTKLLLVVNKMDDHTVNW------SKERYDEIESKM-----TPFLKASGYN---VKKDVQFLPISGLMGLN 277 (514)
Q Consensus 212 ~l~~~~~~~vp~~IvviNK~D~~~~~~------~~~~~~~i~~~l-----~~~l~~~g~~---~~~~~~iipiSa~~G~g 277 (514)
...++...++| +||+.||.|.....+ +.+.|++..++. ..+...+.+. .-.++..+.+|+.+|.|
T Consensus 173 AcSilyktklp-~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G 251 (366)
T KOG1532|consen 173 ACSILYKTKLP-FIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEG 251 (366)
T ss_pred HHHHHHhccCC-eEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCc
Confidence 55566677999 999999999955443 224455554431 1111111110 01257899999999999
Q ss_pred cccccc
Q 010278 278 MKTRVD 283 (514)
Q Consensus 278 i~~l~~ 283 (514)
+++++.
T Consensus 252 ~ddf~~ 257 (366)
T KOG1532|consen 252 FDDFFT 257 (366)
T ss_pred HHHHHH
Confidence 998643
No 277
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.24 E-value=2.1e-11 Score=109.03 Aligned_cols=158 Identities=20% Similarity=0.265 Sum_probs=100.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEee----eEE
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG----RAH 155 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~----~~~ 155 (514)
.+..+.|.++|..|+|||+|++++.+..- . +....||... ...
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF----------~-----------------------~qykaTIgadFltKev~ 52 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKF----------S-----------------------QQYKATIGADFLTKEVQ 52 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHH----------H-----------------------HHhccccchhheeeEEE
Confidence 35678999999999999999999854321 0 0011222222 222
Q ss_pred EEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHH---cCCCeEEEEEeec
Q 010278 156 FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKT---LGVTKLLLVVNKM 231 (514)
Q Consensus 156 ~~~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~-e~l~~~~~---~~vp~~IvviNK~ 231 (514)
+......+.|+||+|.++|-.....-.+.+|.++||.|.+.... |+.-..++ |.+..+.- ..-| |||+-||+
T Consensus 53 Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~S---fe~L~~Wr~EFl~qa~~~~Pe~FP-FVilGNKi 128 (210)
T KOG0394|consen 53 VDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKS---FENLENWRKEFLIQASPQDPETFP-FVILGNKI 128 (210)
T ss_pred EcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhh---hccHHHHHHHHHHhcCCCCCCccc-EEEEcccc
Confidence 32223457799999999998888777899999999999876432 11111222 22222221 2366 99999999
Q ss_pred cCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 232 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 232 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|...- +.+ .......+..++..| ++|++.+||+.+.|+...+.
T Consensus 129 D~~~~---~~r-~VS~~~Aq~WC~s~g-----nipyfEtSAK~~~NV~~AFe 171 (210)
T KOG0394|consen 129 DVDGG---KSR-QVSEKKAQTWCKSKG-----NIPYFETSAKEATNVDEAFE 171 (210)
T ss_pred cCCCC---ccc-eeeHHHHHHHHHhcC-----CceeEEecccccccHHHHHH
Confidence 98321 111 223344455565544 78999999999999988543
No 278
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.24 E-value=1.5e-10 Score=114.81 Aligned_cols=143 Identities=18% Similarity=0.234 Sum_probs=88.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC--
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 160 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~-- 160 (514)
..+|+++|+.|+|||||+|+|+...-...... .+.......+.+++......++.++
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~---------------------~~~~~~~~~~T~~i~~~~~~i~~~g~~ 62 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYP---------------------PDPAEEHIDKTVEIKSSKAEIEENGVK 62 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCC---------------------CCccccccCCceEEEEEEEEEEECCEE
Confidence 47899999999999999999954321100000 0000011122333444444555555
Q ss_pred eEEEEEeCCCCcchHH---------------------HHHHh-----h--hhcCEEEEEEECCC-CcccccccCCcchHH
Q 010278 161 TRFTILDAPGHKSYVP---------------------NMISG-----A--SQADIGVLVISARK-GEFETGFEKGGQTRE 211 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~---------------------~~~~g-----~--~~~D~ailVVda~~-g~~e~~~~~~~qt~e 211 (514)
..++|+||||..++.. ...+- . ..+|++++++++.. +. .....+
T Consensus 63 ~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l-------~~~D~~ 135 (276)
T cd01850 63 LKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGL-------KPLDIE 135 (276)
T ss_pred EEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCC-------CHHHHH
Confidence 4699999999654422 11111 1 15799999999874 42 234566
Q ss_pred HHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccC
Q 010278 212 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 259 (514)
Q Consensus 212 ~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~ 259 (514)
.+..+.. ++| +|+|+||+|+. .+......+..+...++..++
T Consensus 136 ~lk~l~~-~v~-vi~VinK~D~l----~~~e~~~~k~~i~~~l~~~~i 177 (276)
T cd01850 136 FMKRLSK-RVN-IIPVIAKADTL----TPEELKEFKQRIMEDIEEHNI 177 (276)
T ss_pred HHHHHhc-cCC-EEEEEECCCcC----CHHHHHHHHHHHHHHHHHcCC
Confidence 6766664 788 89999999983 234455677777777877654
No 279
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.23 E-value=1.8e-11 Score=105.37 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=71.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
+|+|+|..++|||||+++|+..... +........+.++.............+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP---------------------------DNSVPEETSEITIGVDVIVVDGDRQSLQ 53 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-----------------------------------SSTTSCEEEEEEEETTEEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc---------------------------ccccccccCCCcEEEEEEEecCCceEEE
Confidence 5899999999999999999543221 0000111233444444444444455699
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-----cCCCeEEEEEeecc
Q 010278 165 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMD 232 (514)
Q Consensus 165 liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~-----~~vp~~IvviNK~D 232 (514)
|+|++|++.|.......+..+|++|+|+|+++... + .+..+.+..+.. .++| +|++.||.|
T Consensus 54 ~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s---~---~~~~~~~~~l~~~~~~~~~~p-iilv~nK~D 119 (119)
T PF08477_consen 54 FWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPES---L---EYLSQLLKWLKNIRKRDKNIP-IILVGNKSD 119 (119)
T ss_dssp EEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHH---H---HHHHHHHHHHHHHHHHSSCSE-EEEEEE-TC
T ss_pred EEecCccceecccccchhhcCcEEEEEEcCCChHH---H---HHHHHHHHHHHHHHccCCCCC-EEEEEeccC
Confidence 99999998887654444889999999999987521 1 122222222222 2488 999999998
No 280
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=2.2e-11 Score=107.87 Aligned_cols=164 Identities=23% Similarity=0.200 Sum_probs=104.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
.+...+|.|+|.-+|||||++.++-.... .++ ...... +--.|+.....+.+..
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~-----------------------~~~--~~l~~~-ki~~tvgLnig~i~v~ 67 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFS-----------------------KAY--GGLNPS-KITPTVGLNIGTIEVC 67 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHH-----------------------hhh--cCCCHH-Heecccceeecceeec
Confidence 45567899999999999999987721110 000 000000 0112344444556667
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCc-ccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE-FETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~-~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
+..+.|||..|.+............|+++|+||||.+.. |+.. ..+-+.....-...|+| +++.+||-|+.++
T Consensus 68 ~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~---~t~~~~v~~~E~leg~p-~L~lankqd~q~~-- 141 (197)
T KOG0076|consen 68 NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEES---KTAFEKVVENEKLEGAP-VLVLANKQDLQNA-- 141 (197)
T ss_pred cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHH---HHHHHHHHHHHHhcCCc-hhhhcchhhhhhh--
Confidence 889999999999988888877788999999999999832 2100 01223333444556999 8899999999432
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
....++..-+.. .+..+ ..+.+|.||||++|+|+.+-
T Consensus 142 --~~~~El~~~~~~-~e~~~---~rd~~~~pvSal~gegv~eg 178 (197)
T KOG0076|consen 142 --MEAAELDGVFGL-AELIP---RRDNPFQPVSALTGEGVKEG 178 (197)
T ss_pred --hhHHHHHHHhhh-hhhcC---CccCccccchhhhcccHHHH
Confidence 223333332221 22222 34789999999999999873
No 281
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=5.4e-11 Score=107.21 Aligned_cols=153 Identities=17% Similarity=0.196 Sum_probs=105.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
.+...+|.++|--+|||||++..| +.+.+. ..-.|+....-.+++.
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykL--k~~E~v--------------------------------ttvPTiGfnVE~v~yk 59 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKL--KLGEIV--------------------------------TTVPTIGFNVETVEYK 59 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEee--ccCCcc--------------------------------cCCCccccceeEEEEc
Confidence 456689999999999999998877 333221 1223455555667788
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~ 235 (514)
+..|+++|..|+.++.+.........+++|+|||+++-.- -...++-+..... .++| ++|+.||.|+++
T Consensus 60 n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~R------i~eak~eL~~~l~~~~l~~~~-llv~aNKqD~~~ 132 (181)
T KOG0070|consen 60 NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRER------IEEAKEELHRMLAEPELRNAP-LLVFANKQDLPG 132 (181)
T ss_pred ceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHH------HHHHHHHHHHHHcCcccCCce-EEEEechhhccc
Confidence 9999999999999999888888999999999999987421 1123333322222 2566 899999999965
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
+- + ..++...|.-..+. .....+-+++|.+|+|+.+-+
T Consensus 133 al-s-------~~ei~~~L~l~~l~-~~~w~iq~~~a~~G~GL~egl 170 (181)
T KOG0070|consen 133 AL-S-------AAEITNKLGLHSLR-SRNWHIQSTCAISGEGLYEGL 170 (181)
T ss_pred cC-C-------HHHHHhHhhhhccC-CCCcEEeeccccccccHHHHH
Confidence 42 1 22333333333333 135678899999999998743
No 282
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=99.19 E-value=2.8e-10 Score=94.26 Aligned_cols=87 Identities=25% Similarity=0.402 Sum_probs=76.6
Q ss_pred CCCCceEEEEEEE--c--------cCCeEEEEEEeeeeeecCCEEEEecC-------C-----cEEEEEEEEECCeeeee
Q 010278 309 PNGPFRMPIIDKF--K--------DMGTVVMGKVESGSVREGDSLLVMPN-------K-----AQVKVLAIYCDDNRVRH 366 (514)
Q Consensus 309 ~~~p~~~~i~~~~--~--------~~G~v~~g~v~sG~l~~gd~v~~~p~-------~-----~~~~V~si~~~~~~v~~ 366 (514)
.++|++|+|.++| . .+|.|+.|+|.+|.|++||+|.+.|+ + ...+|.||++.++.+++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~~ 81 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQE 81 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCccccE
Confidence 5789999999999 2 57999999999999999999999976 1 35689999999999999
Q ss_pred cCCCCeEEE---EccCCCcccceeeeEEccCC
Q 010278 367 AGPGENLRI---RLSGIEEEDILSGFVLSSVA 395 (514)
Q Consensus 367 a~aG~~v~~---~l~~~~~~~i~~G~vl~~~~ 395 (514)
|.||..+++ -..++.+.|..+|+|++.++
T Consensus 82 a~pGgliGvgT~Ldpsltk~D~l~GqV~g~pG 113 (113)
T cd03688 82 AVPGGLIGVGTKLDPTLTKADRLVGQVVGEPG 113 (113)
T ss_pred EeCCCeEEEccccCccccccceeeEEEeecCC
Confidence 999999999 44588888999999998753
No 283
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.17 E-value=4.9e-10 Score=105.97 Aligned_cols=114 Identities=21% Similarity=0.199 Sum_probs=73.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEE-----e
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-----T 158 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~-----~ 158 (514)
++|+++|..++|||||+++++. +..... ....-|.++......+. .
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~--~~f~~~---------------------------~~~Tig~~~~~k~~~~~~~~~~~ 51 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICK--NQVLGR---------------------------PSWTVGCSVDVKHHTYKEGTPEE 51 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHc--CCCCCC---------------------------CCcceeeeEEEEEEEEcCCCCCC
Confidence 3699999999999999999843 211100 00011222222222221 1
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--------------------
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-------------------- 218 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~-------------------- 218 (514)
....+.|+||+|+++|....-...+.+|++|+|.|.+.... |+ .....+..+..
T Consensus 52 ~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~S---f~---~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~ 125 (202)
T cd04102 52 KTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKS---SQ---NLQRWSLEALNKDTFPTGLLVTNGDYDSEQF 125 (202)
T ss_pred cEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHH---HH---HHHHHHHHHHHhhcccccccccccccccccc
Confidence 23578999999999998777777889999999999987632 11 22222222322
Q ss_pred --cCCCeEEEEEeeccC
Q 010278 219 --LGVTKLLLVVNKMDD 233 (514)
Q Consensus 219 --~~vp~~IvviNK~D~ 233 (514)
.++| +|+|-||+|+
T Consensus 126 ~~~~~P-iilVGnK~Dl 141 (202)
T cd04102 126 GGNQIP-LLVIGTKLDQ 141 (202)
T ss_pred CCCCce-EEEEEECccc
Confidence 2577 9999999998
No 284
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.17 E-value=1.1e-09 Score=106.87 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=77.9
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
.....++|+++|.+|+|||||+|+|+...... .....+.|..........
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~------------------------------v~~~~~~T~~~~~~~~~~ 76 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAA------------------------------TSAFQSETLRVREVSGTV 76 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcc------------------------------cCCCCCceEEEEEEEEEE
Confidence 44567999999999999999999996542210 001134566666666677
Q ss_pred CCeEEEEEeCCCCcchH-----H-HHHH----hh--hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-cCC---C
Q 010278 159 ETTRFTILDAPGHKSYV-----P-NMIS----GA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGV---T 222 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~-----~-~~~~----g~--~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~-~~v---p 222 (514)
.+..++||||||..+.. . ..+. .+ ...|++++|...+..-+ ....+..+..+.. +|. .
T Consensus 77 ~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~------~~~d~~llk~I~e~fG~~i~~ 150 (249)
T cd01853 77 DGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRR------DYLDLPLLRAITDSFGPSIWR 150 (249)
T ss_pred CCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCC------CHHHHHHHHHHHHHhChhhHh
Confidence 88999999999976551 1 1111 11 25788888876554321 1233444444443 442 3
Q ss_pred eEEEEEeeccCCCCC
Q 010278 223 KLLLVVNKMDDHTVN 237 (514)
Q Consensus 223 ~~IvviNK~D~~~~~ 237 (514)
++|||+||+|....+
T Consensus 151 ~~ivV~T~~d~~~p~ 165 (249)
T cd01853 151 NAIVVLTHAASSPPD 165 (249)
T ss_pred CEEEEEeCCccCCCC
Confidence 589999999985433
No 285
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.16 E-value=3.5e-10 Score=94.02 Aligned_cols=95 Identities=18% Similarity=0.220 Sum_probs=78.7
Q ss_pred eeEEccCCCCccceeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEE
Q 010278 388 GFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVV 467 (514)
Q Consensus 388 G~vl~~~~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~ 467 (514)
|++++.++... +++.|.+++.++... ..+++.++++.+|+++..+.|+|.- ++. +.+++|+..+
T Consensus 1 G~vl~~~~~~~-~~~~~~~~i~~l~~~-~~~l~~~~~v~~~~Gt~~v~~ri~l----l~~----------~~~~pg~~~~ 64 (97)
T cd04094 1 GDVLADPGSLL-PTRRLDVRLTVLLSA-PRPLKHRQRVHLHHGTSEVLARVVL----LDR----------DELAPGEEAL 64 (97)
T ss_pred CCEEecCCCcC-CceEEEEEEEEECCC-CccCCCCCeEEEEeccceEEEEEEe----CCc----------cccCCCCEEE
Confidence 78999887443 369999999986432 2679999999999999999999882 221 2488999999
Q ss_pred EEEEEcceEEeeecccccccceEEEEeCC--eEEEEEEE
Q 010278 468 CRIQVNNSICTEKFADFAQLGRFTLRTEG--KTVAVGKV 504 (514)
Q Consensus 468 v~~~~~~pi~~e~~~~~~~lgrfilr~~g--~tva~G~I 504 (514)
++|+|++|+++... .||+||+.+ +|+|+|+|
T Consensus 65 a~l~l~~pl~~~~g------drfilR~~~~~~tiggG~V 97 (97)
T cd04094 65 AQLRLEEPLVALRG------DRFILRSYSPLRTLGGGRV 97 (97)
T ss_pred EEEEECCcEeecCC------CeEEEeeCCCCeEEEeEEC
Confidence 99999999988764 599999998 99999986
No 286
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.15 E-value=4.3e-10 Score=107.90 Aligned_cols=153 Identities=16% Similarity=0.309 Sum_probs=98.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe-CCeEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETTRF 163 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~-~~~~i 163 (514)
+|.++|..+|||||+...+...... .+-..-|.|++.....+.. ....+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p------------------------------~dT~~L~~T~~ve~~~v~~~~~~~l 50 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP------------------------------RDTLRLEPTIDVEKSHVRFLSFLPL 50 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G------------------------------GGGGG-----SEEEEEEECTTSCEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc------------------------------hhccccCCcCCceEEEEecCCCcEE
Confidence 4889999999999999887433211 0222356777777777653 45699
Q ss_pred EEEeCCCCcchHHHH-----HHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCC
Q 010278 164 TILDAPGHKSYVPNM-----ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 164 ~liDtPGh~~f~~~~-----~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~vp~~IvviNK~D~~~~ 236 (514)
++||+||+..|..+. ..-.+.+++.|+|+|+.....+..+. .....+..+... +++ +.|.|.|||+...
T Consensus 51 ~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~---~~~~~i~~l~~~sp~~~-v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 51 NIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLA---YLSDCIEALRQYSPNIK-VFVFIHKMDLLSE 126 (232)
T ss_dssp EEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHH---HHHHHHHHHHHHSTT-E-EEEEEE-CCCS-H
T ss_pred EEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHH---HHHHHHHHHHHhCCCCe-EEEEEeecccCCH
Confidence 999999998887653 33357899999999998443322221 223333334443 455 8899999999776
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM 274 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~ 274 (514)
+..++.++.+.+.+...+...++. .+.+..+|-+.
T Consensus 127 ~~r~~~~~~~~~~i~~~~~~~~~~---~~~~~~TSI~D 161 (232)
T PF04670_consen 127 DEREEIFRDIQQRIRDELEDLGIE---DITFFLTSIWD 161 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-T---SEEEEEE-TTS
T ss_pred HHHHHHHHHHHHHHHHHhhhcccc---ceEEEeccCcC
Confidence 777788888889998888877654 57889998755
No 287
>PLN00023 GTP-binding protein; Provisional
Probab=99.15 E-value=4.6e-10 Score=111.80 Aligned_cols=146 Identities=16% Similarity=0.146 Sum_probs=87.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
.....++|+++|+.++|||||+.+|+. +..... ....-|.+.......+..
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~--g~F~~~---------------------------~~pTIG~d~~ik~I~~~~ 67 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVK--GSSIAR---------------------------PPQTIGCTVGVKHITYGS 67 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhc--CCcccc---------------------------cCCceeeeEEEEEEEECC
Confidence 345568999999999999999999843 211100 001123333323233321
Q ss_pred -------------CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc------
Q 010278 159 -------------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL------ 219 (514)
Q Consensus 159 -------------~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~------ 219 (514)
....+.|+||+|+++|...+-...+.+|++|+|+|.+.... |+ .....+..+...
T Consensus 68 ~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~S---Fe---nL~kWl~eI~~~~~~s~p 141 (334)
T PLN00023 68 PGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRT---KT---SLQKWASEVAATGTFSAP 141 (334)
T ss_pred cccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhcccccc
Confidence 23568999999999998877777889999999999887421 11 222333333332
Q ss_pred ---------CCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCc
Q 010278 220 ---------GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 260 (514)
Q Consensus 220 ---------~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~ 260 (514)
++| +|||.||+|+....-.........++.+.+.++.|+-
T Consensus 142 ~~s~~~~~~~ip-IILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~l 190 (334)
T PLN00023 142 LGSGGPGGLPVP-YIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGLL 190 (334)
T ss_pred cccccccCCCCc-EEEEEECccccccccccccccccHHHHHHHHHHcCCC
Confidence 367 9999999998321000000011345556666766653
No 288
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.15 E-value=9.9e-11 Score=118.04 Aligned_cols=107 Identities=14% Similarity=0.113 Sum_probs=65.1
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010278 158 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 158 ~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~ 237 (514)
..++.+.||||+|...-- ...+..+|++++|++...|. ....+. ...+.+. -|+|+||+|+...
T Consensus 146 ~~g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd----------~iq~~k-~gi~E~a-DIiVVNKaDl~~~- 209 (332)
T PRK09435 146 AAGYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGD----------ELQGIK-KGIMELA-DLIVINKADGDNK- 209 (332)
T ss_pred ccCCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchH----------HHHHHH-hhhhhhh-heEEeehhcccch-
Confidence 346889999999976322 22367899999998754441 111111 1122333 3789999998432
Q ss_pred chHHHHHHHHhhhhhhhhhccCc-ccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~-~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
...+....++...|....-. .....|++++||++|.|++++.+
T Consensus 210 ---~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~ 253 (332)
T PRK09435 210 ---TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQ 253 (332)
T ss_pred ---hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHH
Confidence 23344555555555432200 00125899999999999999765
No 289
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.13 E-value=5.2e-10 Score=90.23 Aligned_cols=75 Identities=19% Similarity=0.281 Sum_probs=68.9
Q ss_pred EEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCC---cEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeee
Q 010278 315 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 389 (514)
Q Consensus 315 ~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~---~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~ 389 (514)
..|.++| ++.|+++.|+|.+|.|++|+.+.++|++ ...+|++|+++++.+++|.+|+.|++.|++++ ++++||
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~--d~~~Gd 80 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN--DIKVGD 80 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc--cCCCCC
Confidence 4577788 5668999999999999999999999999 77899999999999999999999999999887 799999
Q ss_pred EE
Q 010278 390 VL 391 (514)
Q Consensus 390 vl 391 (514)
+|
T Consensus 81 vi 82 (84)
T cd03692 81 II 82 (84)
T ss_pred EE
Confidence 87
No 290
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=5.2e-10 Score=102.76 Aligned_cols=156 Identities=19% Similarity=0.252 Sum_probs=97.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
....|.++|..|||||+|+-+|++.... ..-.++......+...+.
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~----------------------------------~TvtSiepn~a~~r~gs~ 82 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHR----------------------------------GTVTSIEPNEATYRLGSE 82 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCcc----------------------------------CeeeeeccceeeEeecCc
Confidence 3468999999999999999888443110 011223334445666677
Q ss_pred EEEEEeCCCCcchHHHHHHhhh---hcCEEEEEEECCCCcccccccCCcchH---HHHHHH--HH---cCCCeEEEEEee
Q 010278 162 RFTILDAPGHKSYVPNMISGAS---QADIGVLVISARKGEFETGFEKGGQTR---EHVMLA--KT---LGVTKLLLVVNK 230 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~---~~D~ailVVda~~g~~e~~~~~~~qt~---e~l~~~--~~---~~vp~~IvviNK 230 (514)
..+|||.|||.+.....+.... .+-.+|+|||+..-. ...+ |.++-. .. .+.+++.++.||
T Consensus 83 ~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~--------k~vrdvaefLydil~~~~~~~~~~~vLIaCNK 154 (238)
T KOG0090|consen 83 NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFL--------KNVRDVAEFLYDILLDSRVKKNKPPVLIACNK 154 (238)
T ss_pred ceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccc--------hhhHHHHHHHHHHHHhhccccCCCCEEEEecc
Confidence 7999999999988766666554 789999999987521 2222 222221 11 233449999999
Q ss_pred ccCCCCCchHHHHHHHHhhhhhhhhhcc------Cc--------------------ccCCeeEEeecccccccccc
Q 010278 231 MDDHTVNWSKERYDEIESKMTPFLKASG------YN--------------------VKKDVQFLPISGLMGLNMKT 280 (514)
Q Consensus 231 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g------~~--------------------~~~~~~iipiSa~~G~gi~~ 280 (514)
-|+..+.-.+.-.+.+..++..+...-. .. ....+.|.+.|+++| ++.+
T Consensus 155 qDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~ 229 (238)
T KOG0090|consen 155 QDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQ 229 (238)
T ss_pred hhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHH
Confidence 9997665444334444445544332111 00 113567888898888 6655
No 291
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.13 E-value=6.4e-10 Score=106.37 Aligned_cols=164 Identities=18% Similarity=0.103 Sum_probs=96.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC--C
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 160 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~--~ 160 (514)
...|+++|..++|||||+++|....- . .+....+............ .
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~~~~~~~~ 53 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEF--P-----------------------------EGYPPTIGNLDPAKTIEPYRRN 53 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcC--c-----------------------------ccCCCceeeeeEEEEEEeCCCE
Confidence 38899999999999999999943211 1 1111222223322223222 4
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcC---CCeEEEEEeeccCCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG---VTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~---vp~~IvviNK~D~~~~~ 237 (514)
..+.++||+|+++|-..+-.....++++++++|...... ....+.+....+..+. .| ++++.||+|+....
T Consensus 54 ~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~-----~~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~ 127 (219)
T COG1100 54 IKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRES-----SDELTEEWLEELRELAPDDVP-ILLVGNKIDLFDEQ 127 (219)
T ss_pred EEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchh-----hhHHHHHHHHHHHHhCCCCce-EEEEecccccccch
Confidence 568999999999998888888899999999999885211 1123344444445543 67 99999999994322
Q ss_pred chHHHHHHHHhhhhhhhhhccC---cccCCeeEEeeccc--cccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGY---NVKKDVQFLPISGL--MGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~---~~~~~~~iipiSa~--~G~gi~~l~~ 283 (514)
+....+.........+...... .......++.+|+. ++.|+.+++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~ 178 (219)
T COG1100 128 SSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFK 178 (219)
T ss_pred hHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHH
Confidence 1111111110000001110000 00012238899999 8999987643
No 292
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.12 E-value=3e-10 Score=97.80 Aligned_cols=149 Identities=19% Similarity=0.172 Sum_probs=102.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeE
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 162 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~ 162 (514)
...+.++|--+||||||++.. ..|... +.-+.|+-.....++..+..
T Consensus 20 emel~lvGLq~sGKtt~Vn~i--a~g~~~-------------------------------edmiptvGfnmrk~tkgnvt 66 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVI--ARGQYL-------------------------------EDMIPTVGFNMRKVTKGNVT 66 (186)
T ss_pred eeeEEEEeeccCCcceEEEEE--eeccch-------------------------------hhhcccccceeEEeccCceE
Confidence 367899999999999999877 333211 11334444455566667788
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH---HHcCCCeEEEEEeeccCCCCCch
Q 010278 163 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA---KTLGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 163 i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~---~~~~vp~~IvviNK~D~~~~~~~ 239 (514)
+.++|.||+.+|-.+..+..+.+|+++++|||.+... +...-.|.-.++ ...|+| ++|.-||.|++++- +
T Consensus 67 iklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k-----~~~sr~EL~~LL~k~~l~gip-~LVLGnK~d~~~AL-~ 139 (186)
T KOG0075|consen 67 IKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDK-----LEASRSELHDLLDKPSLTGIP-LLVLGNKIDLPGAL-S 139 (186)
T ss_pred EEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCccc-----chhhHHHHHHHhcchhhcCCc-EEEecccccCcccc-c
Confidence 9999999999999999999999999999999987432 112222222222 334899 88999999996542 2
Q ss_pred HHHHHHHHhhhhhhhhhccCcc--cCCeeEEeeccccccccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNV--KKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~--~~~~~iipiSa~~G~gi~~l 281 (514)
+ ..+. .++|+.. ..++..+.+|++...||+..
T Consensus 140 ~---~~li-------~rmgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 140 K---IALI-------ERMGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred H---HHHH-------HHhCccccccceEEEEEEEEcCCccHHHH
Confidence 1 1222 2223221 23678899999999999874
No 293
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=2.6e-10 Score=98.29 Aligned_cols=152 Identities=20% Similarity=0.210 Sum_probs=104.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeee----EEEE
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR----AHFE 157 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~----~~~~ 157 (514)
-...|+++|+.|+|||-|+.++ ..|....+ .|.|+-+.+ ..+.
T Consensus 6 flfkivlvgnagvgktclvrrf--tqglfppg-------------------------------qgatigvdfmiktvev~ 52 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRF--TQGLFPPG-------------------------------QGATIGVDFMIKTVEVN 52 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhh--hccCCCCC-------------------------------CCceeeeeEEEEEEEEC
Confidence 3468999999999999999987 55554432 455555543 3344
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010278 158 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 158 ~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~ 237 (514)
-++.++.||||+|+++|..-+-+..+.|+..|||.|.+.... |.-.+.+...+..-...++- -|+|-||+|+ .+
T Consensus 53 gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqps---fdclpewlreie~yan~kvl-kilvgnk~d~--~d 126 (213)
T KOG0095|consen 53 GEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPS---FDCLPEWLREIEQYANNKVL-KILVGNKIDL--AD 126 (213)
T ss_pred CeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcc---hhhhHHHHHHHHHHhhcceE-EEeeccccch--hh
Confidence 456788999999999999999998999999999999875432 33224444444444444554 3678999998 43
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
..+.-+++-+++.. .. +.-|+.+||+..+|++.|+
T Consensus 127 -rrevp~qigeefs~----~q-----dmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 127 -RREVPQQIGEEFSE----AQ-----DMYFLETSAKEADNVEKLF 161 (213)
T ss_pred -hhhhhHHHHHHHHH----hh-----hhhhhhhcccchhhHHHHH
Confidence 12233334333332 21 3458899999999999874
No 294
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=3.4e-10 Score=103.81 Aligned_cols=152 Identities=18% Similarity=0.239 Sum_probs=96.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeE
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 162 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~ 162 (514)
...|+++|.+++|||-|+.++....-.++.+ .--|+........++-...+
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~~~Sk-----------------------------sTIGvef~t~t~~vd~k~vk 64 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESK-----------------------------STIGVEFATRTVNVDGKTVK 64 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccCcccc-----------------------------cceeEEEEeeceeecCcEEE
Confidence 3569999999999999998883322111110 00233333333333334456
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCCch
Q 010278 163 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 163 i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK~D~~~~~~~ 239 (514)
..||||+|+++|..-+....+.|-+|+||.|.+...+ |+ ...+.|..++.+ +++ +++|-||+|+..
T Consensus 65 aqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~T---fe---nv~rWL~ELRdhad~niv-imLvGNK~DL~~---- 133 (222)
T KOG0087|consen 65 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQT---FE---NVERWLKELRDHADSNIV-IMLVGNKSDLNH---- 133 (222)
T ss_pred EeeecccchhhhccccchhhcccceeEEEEechhHHH---HH---HHHHHHHHHHhcCCCCeE-EEEeecchhhhh----
Confidence 7899999999998777777789999999999976522 11 333444455554 566 788999999921
Q ss_pred HHHHHHHHh-hhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 240 KERYDEIES-KMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 240 ~~~~~~i~~-~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
...+.. +-+.+.+. ....|+.+||+.+.|+.+.+.
T Consensus 134 ---lraV~te~~k~~Ae~------~~l~f~EtSAl~~tNVe~aF~ 169 (222)
T KOG0087|consen 134 ---LRAVPTEDGKAFAEK------EGLFFLETSALDATNVEKAFE 169 (222)
T ss_pred ---ccccchhhhHhHHHh------cCceEEEecccccccHHHHHH
Confidence 111111 12222222 246899999999999998654
No 295
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=2.3e-10 Score=98.51 Aligned_cols=156 Identities=17% Similarity=0.172 Sum_probs=99.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
..+.|+|+..+|||+++-+-+.. ||..+++. .-|+.......+-.-....+
T Consensus 22 fKlliiGnssvGKTSfl~ry~dd----------------------SFt~afvs-------TvGidFKvKTvyr~~kRikl 72 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADD----------------------SFTSAFVS-------TVGIDFKVKTVYRSDKRIKL 72 (193)
T ss_pred eeEEEEccCCccchhhhHHhhcc----------------------ccccceee-------eeeeeEEEeEeeecccEEEE
Confidence 48999999999999998655322 22222221 13444444333222233578
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHH
Q 010278 164 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERY 243 (514)
Q Consensus 164 ~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~ 243 (514)
.++||.|+++|..-+-...+++++.||+.|.+....-+.++ ...-.+......+.+ +|+|-||+|+. + ++.
T Consensus 73 QiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svq---dw~tqIktysw~naq-vilvgnKCDmd--~---eRv 143 (193)
T KOG0093|consen 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQ---DWITQIKTYSWDNAQ-VILVGNKCDMD--S---ERV 143 (193)
T ss_pred EEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHH---HHHHHheeeeccCce-EEEEecccCCc--c---cee
Confidence 99999999999887777789999999999987643211110 111112222334677 99999999982 2 121
Q ss_pred HHHHhhhhhhhhhccCcccCCeeEEeecccccccccccccc
Q 010278 244 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDK 284 (514)
Q Consensus 244 ~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~ 284 (514)
-..+..+.+..++|| .++.+||+...|+..+++.
T Consensus 144 -is~e~g~~l~~~LGf------efFEtSaK~NinVk~~Fe~ 177 (193)
T KOG0093|consen 144 -ISHERGRQLADQLGF------EFFETSAKENINVKQVFER 177 (193)
T ss_pred -eeHHHHHHHHHHhCh------HHhhhcccccccHHHHHHH
Confidence 122344556667776 5899999999999986543
No 296
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.07 E-value=6.2e-10 Score=97.33 Aligned_cols=150 Identities=19% Similarity=0.209 Sum_probs=94.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhh--cccEEEeeeEEEEe
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERI--KGKTVEVGRAHFET 158 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~--~giT~~~~~~~~~~ 158 (514)
...+.|.++|..|+|||+|+-++. ....++ +.. -|+...+....+.-
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv--~~~fd~-----------------------------~~~~tIGvDFkvk~m~vdg 57 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFV--SNTFDD-----------------------------LHPTTIGVDFKVKVMQVDG 57 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHH--hcccCc-----------------------------cCCceeeeeEEEEEEEEcC
Confidence 346889999999999999986652 222221 111 23333333344444
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHH-HHHHHc----CCCeEEEEEeeccC
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTL----GVTKLLLVVNKMDD 233 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l-~~~~~~----~vp~~IvviNK~D~ 233 (514)
...++.||||+|+++|...+-+..+.|-++|+|.|.+.-.. |. .. .++ .-+..+ ++- .++|-||+|.
T Consensus 58 ~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdt---f~---kL-d~W~~Eld~Ystn~dii-kmlVgNKiDk 129 (209)
T KOG0080|consen 58 KRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDT---FV---KL-DIWLKELDLYSTNPDII-KMLVGNKIDK 129 (209)
T ss_pred ceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhh---HH---hH-HHHHHHHHhhcCCccHh-Hhhhcccccc
Confidence 56789999999999999888888899999999999876421 10 11 222 111111 333 3468999997
Q ss_pred CCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 234 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 234 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
. + ++. -.+++=..+.++. .+-|+.+||++.+|+..-
T Consensus 130 e--s---~R~-V~reEG~kfAr~h------~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 130 E--S---ERV-VDREEGLKFARKH------RCLFIECSAKTRENVQCC 165 (209)
T ss_pred h--h---ccc-ccHHHHHHHHHhh------CcEEEEcchhhhccHHHH
Confidence 2 1 111 1122223344444 357999999999999863
No 297
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=1.6e-09 Score=111.38 Aligned_cols=146 Identities=24% Similarity=0.253 Sum_probs=105.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..++..||++|++|+|||||+..|....- + .+-.+...-||+-. -.
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~t-----------k-----------------~ti~~i~GPiTvvs------gK 111 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFT-----------K-----------------QTIDEIRGPITVVS------GK 111 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHH-----------H-----------------hhhhccCCceEEee------cc
Confidence 44677889999999999999998843211 0 00112223455533 34
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~ 239 (514)
.++++|+.+| +-+..|+.-+..||.+||+||++-| ++..|.|.|.++...|.|+++.|++..|+.. +
T Consensus 112 ~RRiTflEcp---~Dl~~miDvaKIaDLVlLlIdgnfG-------fEMETmEFLnil~~HGmPrvlgV~ThlDlfk---~ 178 (1077)
T COG5192 112 TRRITFLECP---SDLHQMIDVAKIADLVLLLIDGNFG-------FEMETMEFLNILISHGMPRVLGVVTHLDLFK---N 178 (1077)
T ss_pred eeEEEEEeCh---HHHHHHHhHHHhhheeEEEeccccC-------ceehHHHHHHHHhhcCCCceEEEEeeccccc---C
Confidence 6899999999 4477888889999999999999988 3378999999999999999999999999942 3
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG 275 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G 275 (514)
...+..++..+...+-.--|. ...++.+|+...
T Consensus 179 ~stLr~~KKrlkhRfWtEiyq---GaKlFylsgV~n 211 (1077)
T COG5192 179 PSTLRSIKKRLKHRFWTEIYQ---GAKLFYLSGVEN 211 (1077)
T ss_pred hHHHHHHHHHHhhhHHHHHcC---CceEEEeccccc
Confidence 455666666665444322232 467888887543
No 298
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=7.2e-10 Score=95.99 Aligned_cols=152 Identities=20% Similarity=0.227 Sum_probs=94.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeE
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 162 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~ 162 (514)
...+.++|+.|+|||-|+.+++...-. +. ....-|+.........-.+..+
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfk--Dd---------------------------ssHTiGveFgSrIinVGgK~vK 59 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFK--DD---------------------------SSHTIGVEFGSRIVNVGGKTVK 59 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhc--cc---------------------------ccceeeeeecceeeeecCcEEE
Confidence 357899999999999999888532211 00 0001222222222233334467
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCe--EEEEEeeccCCCCCchH
Q 010278 163 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTK--LLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 163 i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~--~IvviNK~D~~~~~~~~ 240 (514)
+.||||+|+++|..-+.+..+.|-.++||.|++.... |+ ..-..+.-++.+--|. +|++-||-|+. +..+
T Consensus 60 LQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsrds---fn---aLtnWL~DaR~lAs~nIvviL~GnKkDL~--~~R~ 131 (214)
T KOG0086|consen 60 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDS---FN---ALTNWLTDARTLASPNIVVILCGNKKDLD--PERE 131 (214)
T ss_pred EEEeecccHHHHHHHHHHHhccccceEEEEeccchhh---HH---HHHHHHHHHHhhCCCcEEEEEeCChhhcC--hhhh
Confidence 8999999999998888777888999999999876432 11 2333444455555443 45566999982 2112
Q ss_pred HHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 241 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 241 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
..|. +...+.. ...+.+..+||++|+|+++-
T Consensus 132 Vtfl----EAs~Faq------Enel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 132 VTFL----EASRFAQ------ENELMFLETSALTGENVEEA 162 (214)
T ss_pred hhHH----HHHhhhc------ccceeeeeecccccccHHHH
Confidence 2222 2222222 23567899999999999984
No 299
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.05 E-value=5.2e-10 Score=94.02 Aligned_cols=133 Identities=22% Similarity=0.218 Sum_probs=87.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
.+++++|.+++|||||++.|.+..-. .--|+. ++++++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l-----------------------------------ykKTQA-----ve~~d~-- 39 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL-----------------------------------YKKTQA-----VEFNDK-- 39 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh-----------------------------------hcccce-----eeccCc--
Confidence 36899999999999999998322110 001111 222222
Q ss_pred EEEeCCC----CcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010278 164 TILDAPG----HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 164 ~liDtPG----h~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~ 239 (514)
-.||||| |..+....+..+..+|+.++|-.|+++.. +..-.++.....| +|-+|+|.|++. +
T Consensus 40 ~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s----------~f~p~f~~~~~k~-vIgvVTK~DLae-d-- 105 (148)
T COG4917 40 GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPES----------RFPPGFLDIGVKK-VIGVVTKADLAE-D-- 105 (148)
T ss_pred cccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccc----------cCCcccccccccc-eEEEEecccccc-h--
Confidence 2689999 56666666666789999999999998731 1112233333445 889999999932 2
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
.+ .+..+.+|.+.|- -+++.+|+....|++++.
T Consensus 106 -~d----I~~~~~~L~eaGa-----~~IF~~s~~d~~gv~~l~ 138 (148)
T COG4917 106 -AD----ISLVKRWLREAGA-----EPIFETSAVDNQGVEELV 138 (148)
T ss_pred -Hh----HHHHHHHHHHcCC-----cceEEEeccCcccHHHHH
Confidence 22 3445556777774 389999999999998843
No 300
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.05 E-value=8.1e-10 Score=108.56 Aligned_cols=156 Identities=19% Similarity=0.225 Sum_probs=92.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
-+-.--|+++|-||+|||||++++......|.+ |.|.+ ..-.++.... ..
T Consensus 156 LKllADVGLVG~PNaGKSTlls~vS~AkPKIad-------------------YpFTT----------L~PnLGvV~~-~~ 205 (369)
T COG0536 156 LKLLADVGLVGLPNAGKSTLLSAVSAAKPKIAD-------------------YPFTT----------LVPNLGVVRV-DG 205 (369)
T ss_pred EeeecccccccCCCCcHHHHHHHHhhcCCcccC-------------------Ccccc----------ccCcccEEEe-cC
Confidence 344557899999999999999999544433322 11110 1122333333 45
Q ss_pred CeEEEEEeCCCC-----------cchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-----HHcCCCe
Q 010278 160 TTRFTILDAPGH-----------KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-----KTLGVTK 223 (514)
Q Consensus 160 ~~~i~liDtPGh-----------~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~-----~~~~vp~ 223 (514)
...|++-|.||. .+|++.. ..|-+.+.|||.+.-.-. .....-.....-+ ...+-|
T Consensus 206 ~~sfv~ADIPGLIEGAs~G~GLG~~FLrHI----ERt~vL~hviD~s~~~~~---dp~~~~~~i~~EL~~Y~~~L~~K~- 277 (369)
T COG0536 206 GESFVVADIPGLIEGASEGVGLGLRFLRHI----ERTRVLLHVIDLSPIDGR---DPIEDYQTIRNELEKYSPKLAEKP- 277 (369)
T ss_pred CCcEEEecCcccccccccCCCccHHHHHHH----HhhheeEEEEecCcccCC---CHHHHHHHHHHHHHHhhHHhccCc-
Confidence 677999999994 3466554 556889999998753200 0000111111111 223556
Q ss_pred EEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccccc
Q 010278 224 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDK 284 (514)
Q Consensus 224 ~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~ 284 (514)
.+||+||||++ ++++.++.....+.... ++ ..+++|||++++|+.++...
T Consensus 278 ~ivv~NKiD~~---~~~e~~~~~~~~l~~~~---~~-----~~~~~ISa~t~~g~~~L~~~ 327 (369)
T COG0536 278 RIVVLNKIDLP---LDEEELEELKKALAEAL---GW-----EVFYLISALTREGLDELLRA 327 (369)
T ss_pred eEEEEeccCCC---cCHHHHHHHHHHHHHhc---CC-----CcceeeehhcccCHHHHHHH
Confidence 77999999963 24566666665554322 22 23344999999999997553
No 301
>PRK13768 GTPase; Provisional
Probab=99.05 E-value=1.6e-09 Score=106.11 Aligned_cols=111 Identities=20% Similarity=0.280 Sum_probs=66.4
Q ss_pred CeEEEEEeCCCCcchH------HHHHHhhhh--cCEEEEEEECCCCcccccccCCcchHHHHHHHH-----HcCCCeEEE
Q 010278 160 TTRFTILDAPGHKSYV------PNMISGASQ--ADIGVLVISARKGEFETGFEKGGQTREHVMLAK-----TLGVTKLLL 226 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~------~~~~~g~~~--~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~-----~~~vp~~Iv 226 (514)
+..+.++||||+.++. +...+.+.. ++++++|+|+..+.. +.+.+...++. ..+.| +|+
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~-------~~d~~~~~~l~~~~~~~~~~~-~i~ 167 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKT-------PSDFVSLLLLALSVQLRLGLP-QIP 167 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCC-------HHHHHHHHHHHHHHHHHcCCC-EEE
Confidence 3478999999976542 222333333 899999999987632 23333333222 56888 889
Q ss_pred EEeeccCCCCCchHHHHHHHHhh---------------------hhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 227 VVNKMDDHTVNWSKERYDEIESK---------------------MTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 227 viNK~D~~~~~~~~~~~~~i~~~---------------------l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|+||+|+...+. .+.+...... +...+++.+. ..+++++|++++.|++++.+
T Consensus 168 v~nK~D~~~~~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~----~~~vi~iSa~~~~gl~~L~~ 240 (253)
T PRK13768 168 VLNKADLLSEEE-LERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGL----PVRVIPVSAKTGEGFDELYA 240 (253)
T ss_pred EEEhHhhcCchh-HHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCC----CCcEEEEECCCCcCHHHHHH
Confidence 999999843221 1111111111 1112333332 35899999999999998543
No 302
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.03 E-value=3.5e-09 Score=106.75 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=28.3
Q ss_pred eEEEEEeCCCC----cch---HHHHHHhhhhcCEEEEEEECCC
Q 010278 161 TRFTILDAPGH----KSY---VPNMISGASQADIGVLVISARK 196 (514)
Q Consensus 161 ~~i~liDtPGh----~~f---~~~~~~g~~~~D~ailVVda~~ 196 (514)
..+.|+||||. .++ .+..+..++.||++++|||+..
T Consensus 69 v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 69 VPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred ceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 56999999996 333 2355666899999999999974
No 303
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.03 E-value=6.6e-10 Score=107.63 Aligned_cols=114 Identities=16% Similarity=0.311 Sum_probs=55.8
Q ss_pred EEEEEeCCCCcchHHHH------HHhhh--hcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 162 RFTILDAPGHKSYVPNM------ISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~------~~g~~--~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
.+.|+||||+.++.... +..+. ..=++++++|+..-.....|- ....-.+.....+++| .|.|+||+|+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~--s~~L~s~s~~~~~~lP-~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFV--SSLLLSLSIMLRLELP-HVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHH--HHHHHHHHHHHHHTSE-EEEEE--GGG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHH--HHHHHHHHHHhhCCCC-EEEeeeccCc
Confidence 78999999987764333 33332 345789999987531100000 1112222334447999 7899999999
Q ss_pred CCCC------chH--HH--------HHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 234 HTVN------WSK--ER--------YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 234 ~~~~------~~~--~~--------~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
.... |-. +. +.....++..++...+. ..+++|+|+.+++|+.++.
T Consensus 169 ~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~----~~~f~pls~~~~~~~~~L~ 229 (238)
T PF03029_consen 169 LSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGL----VIRFIPLSSKDGEGMEELL 229 (238)
T ss_dssp S-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSS----S---EE-BTTTTTTHHHHH
T ss_pred ccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCC----CceEEEEECCChHHHHHHH
Confidence 5411 100 00 23333344444444443 1389999999999998843
No 304
>PTZ00099 rab6; Provisional
Probab=99.02 E-value=9e-10 Score=102.01 Aligned_cols=105 Identities=20% Similarity=0.232 Sum_probs=69.4
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-HHc--CCCeEEEEEeeccCCCC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTL--GVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~-~~~--~vp~~IvviNK~D~~~~ 236 (514)
...+.|+||||+++|...+-..++.+|++|+|+|++.... |+ ...+.+..+ ... ++| +|+|.||+|+...
T Consensus 28 ~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~s---f~---~~~~w~~~i~~~~~~~~p-iilVgNK~DL~~~ 100 (176)
T PTZ00099 28 PVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQS---FE---NTTKWIQDILNERGKDVI-IALVGNKTDLGDL 100 (176)
T ss_pred EEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCe-EEEEEECcccccc
Confidence 4678999999999998877777899999999999987521 11 222333322 222 456 8999999998321
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
..... ++...+.+.. ...++++||++|.|+.++++
T Consensus 101 --~~v~~----~e~~~~~~~~------~~~~~e~SAk~g~nV~~lf~ 135 (176)
T PTZ00099 101 --RKVTY----EEGMQKAQEY------NTMFHETSAKAGHNIKVLFK 135 (176)
T ss_pred --cCCCH----HHHHHHHHHc------CCEEEEEECCCCCCHHHHHH
Confidence 11011 1112222322 24689999999999999754
No 305
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.98 E-value=2.3e-09 Score=101.99 Aligned_cols=99 Identities=11% Similarity=0.137 Sum_probs=58.4
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~ 239 (514)
+..+.||+|.|.-.. ........+..+.|+|+..+.. . ........+.+ .++++||+|+. +..
T Consensus 102 ~~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d~---------~--~~~~~~~~~~a-~iiv~NK~Dl~--~~~ 164 (207)
T TIGR00073 102 DIDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGDD---------K--PLKYPGMFKEA-DLIVINKADLA--EAV 164 (207)
T ss_pred CCCEEEEecCCCcCC---CcccccccCeEEEEEecCcccc---------h--hhhhHhHHhhC-CEEEEEHHHcc--ccc
Confidence 457899999993111 0111124567788999986531 1 11222334566 68999999993 322
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.....+..+.++ +.+ ...+++++||++|.|+.++++
T Consensus 165 ~~~~~~~~~~l~----~~~----~~~~i~~~Sa~~g~gv~~l~~ 200 (207)
T TIGR00073 165 GFDVEKMKADAK----KIN----PEAEIILMSLKTGEGLDEWLE 200 (207)
T ss_pred hhhHHHHHHHHH----HhC----CCCCEEEEECCCCCCHHHHHH
Confidence 222333333333 222 246899999999999988543
No 306
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.97 E-value=4.6e-09 Score=105.67 Aligned_cols=103 Identities=18% Similarity=0.205 Sum_probs=61.5
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010278 158 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 158 ~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~ 237 (514)
..++.+.||||||... .....+..+|.++++.+...+ ...+.+. -..++.| .++++||+|+....
T Consensus 124 ~~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~----------~el~~~~-~~l~~~~-~ivv~NK~Dl~~~~ 188 (300)
T TIGR00750 124 AAGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTG----------DDLQGIK-AGLMEIA-DIYVVNKADGEGAT 188 (300)
T ss_pred hCCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCcc----------HHHHHHH-HHHhhhc-cEEEEEcccccchh
Confidence 3578899999999652 223346778999988765433 2222222 1224677 68899999994321
Q ss_pred chHHHHHHHHhh----hhhhhhh-ccCcccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEIESK----MTPFLKA-SGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~----l~~~l~~-~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
....+... +..+.+. .++ ..+++++||++|.|+.++.+
T Consensus 189 ----~~~~~~~~~~~~l~~l~~~~~~~----~~~v~~iSA~~g~Gi~~L~~ 231 (300)
T TIGR00750 189 ----NVTIARLMLALALEEIRRREDGW----RPPVLTTSAVEGRGIDELWD 231 (300)
T ss_pred ----HHHHHHHHHHHHHhhccccccCC----CCCEEEEEccCCCCHHHHHH
Confidence 11111111 1211111 122 24799999999999998755
No 307
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.94 E-value=9.6e-09 Score=104.13 Aligned_cols=135 Identities=16% Similarity=0.172 Sum_probs=80.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCC--cchhH-HHHHHHHHhhcCccchhhhhhccCchhhhhcc---cEEEee
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQ--VDDRT-IQKYEKEAKDKSRESWYMAYIMDTNEEERIKG---KTVEVG 152 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~--i~~~~-~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g---iT~~~~ 152 (514)
.....+.|+++|++++|||||+++|...... +.+.. ..+..-+... ...| .|.+..
T Consensus 13 RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpq------------------s~~GktItTTePk 74 (492)
T TIGR02836 13 RTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQ------------------SAAGKTIMTTEPK 74 (492)
T ss_pred HhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCc------------------CCCCCCcccCCCc
Confidence 3445689999999999999999999665322 22111 0111111111 1256 444444
Q ss_pred e---EEEEe-----CCeEEEEEeCCCCcc-------------------------hHHH----HHHhhh-hcCEEEEEE-E
Q 010278 153 R---AHFET-----ETTRFTILDAPGHKS-------------------------YVPN----MISGAS-QADIGVLVI-S 193 (514)
Q Consensus 153 ~---~~~~~-----~~~~i~liDtPGh~~-------------------------f~~~----~~~g~~-~~D~ailVV-d 193 (514)
+ -.++. -...+.||||+|..+ |... +...+. .+|++|+|. |
T Consensus 75 fvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTD 154 (492)
T TIGR02836 75 FVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTD 154 (492)
T ss_pred cccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcC
Confidence 4 11222 136799999999422 1111 222344 899999999 8
Q ss_pred CCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 194 ARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 194 a~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
++-+..+..- ......+.+..++..+.| ||+++||.|-
T Consensus 155 gsi~dI~Re~-y~~aEe~~i~eLk~~~kP-fiivlN~~dp 192 (492)
T TIGR02836 155 GTITDIPRED-YVEAEERVIEELKELNKP-FIILLNSTHP 192 (492)
T ss_pred CCcccccccc-chHHHHHHHHHHHhcCCC-EEEEEECcCC
Confidence 7522111000 113567788889999999 9999999994
No 308
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.89 E-value=5.6e-09 Score=106.21 Aligned_cols=151 Identities=18% Similarity=0.266 Sum_probs=83.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEE-EeeeEEEEe
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTV-EVGRAHFET 158 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~-~~~~~~~~~ 158 (514)
...+++|||+|.+|+|||||+|+|++.... +. ..-..|++- ......+..
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~-d~----------------------------~aA~tGv~etT~~~~~Y~~ 82 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGLGHE-DE----------------------------GAAPTGVVETTMEPTPYPH 82 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT--TT-ST----------------------------TS--SSSHSCCTS-EEEE-
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCCCCC-Cc----------------------------CcCCCCCCcCCCCCeeCCC
Confidence 346789999999999999999999542110 00 001122210 111122333
Q ss_pred CC-eEEEEEeCCCC-------cchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEee
Q 010278 159 ET-TRFTILDAPGH-------KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 230 (514)
Q Consensus 159 ~~-~~i~liDtPGh-------~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK 230 (514)
.. ..++|||.||. .+|+..+ ++...|+.|+|.+..-. ......+..+..+|.+ +.+|-+|
T Consensus 83 p~~pnv~lWDlPG~gt~~f~~~~Yl~~~--~~~~yD~fiii~s~rf~---------~ndv~La~~i~~~gK~-fyfVRTK 150 (376)
T PF05049_consen 83 PKFPNVTLWDLPGIGTPNFPPEEYLKEV--KFYRYDFFIIISSERFT---------ENDVQLAKEIQRMGKK-FYFVRTK 150 (376)
T ss_dssp SS-TTEEEEEE--GGGSS--HHHHHHHT--TGGG-SEEEEEESSS-----------HHHHHHHHHHHHTT-E-EEEEE--
T ss_pred CCCCCCeEEeCCCCCCCCCCHHHHHHHc--cccccCEEEEEeCCCCc---------hhhHHHHHHHHHcCCc-EEEEEec
Confidence 33 46999999995 3344443 46788987776664422 3455566677788988 9999999
Q ss_pred ccCC--------CCCchH-HHHHHHHhhhhhhhhhccCcccCCeeEEeecccc
Q 010278 231 MDDH--------TVNWSK-ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM 274 (514)
Q Consensus 231 ~D~~--------~~~~~~-~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~ 274 (514)
+|.. ...+++ ..++++.+.....|++.|.. ..+++-+|.+.
T Consensus 151 vD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~---~P~VFLVS~~d 200 (376)
T PF05049_consen 151 VDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVS---EPQVFLVSSFD 200 (376)
T ss_dssp HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-S---S--EEEB-TTT
T ss_pred ccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCC---cCceEEEeCCC
Confidence 9951 112333 33677777777778877765 56899999864
No 309
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.89 E-value=2.5e-08 Score=98.94 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=69.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
...++|+++|.+|+|||||+|+|+........ .+ .+.+...........+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs------------------------~f------~s~t~~~~~~~~~~~G 85 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVS------------------------AF------QSEGLRPMMVSRTRAG 85 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCccccc------------------------CC------CCcceeEEEEEEEECC
Confidence 46789999999999999999999643321110 00 1111111122334578
Q ss_pred eEEEEEeCCCCcch--HHH-HHHhh------hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-cC---CCeEEEE
Q 010278 161 TRFTILDAPGHKSY--VPN-MISGA------SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LG---VTKLLLV 227 (514)
Q Consensus 161 ~~i~liDtPGh~~f--~~~-~~~g~------~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~-~~---vp~~Ivv 227 (514)
+.+++|||||..+. ... .+..+ ..+|++|+|...+..-+ ....+..+..+.. +| -.++||+
T Consensus 86 ~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~------~~~DkqlLk~Iqe~FG~~iw~~~IVV 159 (313)
T TIGR00991 86 FTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRV------DTLDGQVIRAITDSFGKDIWRKSLVV 159 (313)
T ss_pred eEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccC------CHHHHHHHHHHHHHhhhhhhccEEEE
Confidence 99999999997654 111 11111 25899999965443211 1233444444333 23 2358999
Q ss_pred EeeccCC
Q 010278 228 VNKMDDH 234 (514)
Q Consensus 228 iNK~D~~ 234 (514)
+|+.|..
T Consensus 160 fTh~d~~ 166 (313)
T TIGR00991 160 LTHAQFS 166 (313)
T ss_pred EECCccC
Confidence 9999974
No 310
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.89 E-value=4.1e-09 Score=91.92 Aligned_cols=157 Identities=13% Similarity=0.183 Sum_probs=95.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
-...|+++|.-=+|||+|+=+ |-........+..++. +|.. ....++....
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLR--y~EnkFn~kHlsTlQA------------SF~~---------------kk~n~ed~ra 62 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLR--YVENKFNCKHLSTLQA------------SFQN---------------KKVNVEDCRA 62 (218)
T ss_pred eeeEEEEEcCCccchhHHHHH--HHHhhcchhhHHHHHH------------HHhh---------------ccccccccee
Confidence 357899999999999999843 3333333222211111 1110 0112223345
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHH
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 241 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~ 241 (514)
.+.||||+|+++|-..---..+.+|.+|||.|.++... |+.-..+-..+..+....+. +++|-||+|+ . +
T Consensus 63 ~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdS---FqKVKnWV~Elr~mlGnei~-l~IVGNKiDL--E----e 132 (218)
T KOG0088|consen 63 DLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDS---FQKVKNWVLELRTMLGNEIE-LLIVGNKIDL--E----E 132 (218)
T ss_pred eeeeeeccchHhhhccCceEEeCCCceEEEEeccchHH---HHHHHHHHHHHHHHhCCeeE-EEEecCcccH--H----H
Confidence 68999999999996443333578999999999887532 22111122222222222355 7889999998 2 2
Q ss_pred HHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 242 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 242 ~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
..+-..++...+....| ..++.+||+...||.+++.
T Consensus 133 eR~Vt~qeAe~YAesvG------A~y~eTSAk~N~Gi~elFe 168 (218)
T KOG0088|consen 133 ERQVTRQEAEAYAESVG------ALYMETSAKDNVGISELFE 168 (218)
T ss_pred hhhhhHHHHHHHHHhhc------hhheecccccccCHHHHHH
Confidence 33344455566666665 4688999999999999765
No 311
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.88 E-value=4.9e-09 Score=90.44 Aligned_cols=152 Identities=18% Similarity=0.218 Sum_probs=101.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
...+|+|.+++|||+|+-++... . |..+|++- -|+...+....+.-....+
T Consensus 9 fkllIigDsgVGKssLl~rF~dd--t--------------------Fs~sYitT-------iGvDfkirTv~i~G~~VkL 59 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADD--T--------------------FSGSYITT-------IGVDFKIRTVDINGDRVKL 59 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhc--c--------------------cccceEEE-------eeeeEEEEEeecCCcEEEE
Confidence 34678999999999998666322 1 11122111 2333333333344345678
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCCCchHH
Q 010278 164 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKE 241 (514)
Q Consensus 164 ~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~vp~~IvviNK~D~~~~~~~~~ 241 (514)
.|+||+|.++|...+....+..+++++|.|.+.|.. | ..-++.|.-++.. .+| -|+|-||.|.++
T Consensus 60 qIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ES---F---~Nv~rWLeei~~ncdsv~-~vLVGNK~d~~~------ 126 (198)
T KOG0079|consen 60 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGES---F---NNVKRWLEEIRNNCDSVP-KVLVGNKNDDPE------ 126 (198)
T ss_pred EEeecccHHHHHHHHHHHccCCceEEEEEECcchhh---h---HhHHHHHHHHHhcCcccc-ceecccCCCCcc------
Confidence 999999999998888888889999999999998753 2 3566666666554 366 468999999832
Q ss_pred HHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 242 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 242 ~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+.--..++.+.+...+| +.++.+||+...|++.++.
T Consensus 127 RrvV~t~dAr~~A~~mg------ie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 127 RRVVDTEDARAFALQMG------IELFETSAKENENVEAMFH 162 (198)
T ss_pred ceeeehHHHHHHHHhcC------chheehhhhhcccchHHHH
Confidence 11122234445555554 5689999999999988643
No 312
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.87 E-value=1.1e-08 Score=98.88 Aligned_cols=66 Identities=17% Similarity=0.137 Sum_probs=47.6
Q ss_pred eEEEEEeCCCCcc--------h----HHH-HHHhhh-hcCEEEEEEECCCCcccccccCCcch-HHHHHHHHHcCCCeEE
Q 010278 161 TRFTILDAPGHKS--------Y----VPN-MISGAS-QADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTLGVTKLL 225 (514)
Q Consensus 161 ~~i~liDtPGh~~--------f----~~~-~~~g~~-~~D~ailVVda~~g~~e~~~~~~~qt-~e~l~~~~~~~vp~~I 225 (514)
..++|+||||... . +.. +...+. ..+++++|+||..+.. .+. .+.+..+...+.+ .|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~-------~~d~l~ia~~ld~~~~r-ti 196 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLA-------NSDALKLAKEVDPQGER-TI 196 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCC-------chhHHHHHHHHHHcCCc-EE
Confidence 6799999999742 1 222 233344 4569999999988743 344 5677777778888 88
Q ss_pred EEEeeccCC
Q 010278 226 LVVNKMDDH 234 (514)
Q Consensus 226 vviNK~D~~ 234 (514)
+|+||+|..
T Consensus 197 ~ViTK~D~~ 205 (240)
T smart00053 197 GVITKLDLM 205 (240)
T ss_pred EEEECCCCC
Confidence 999999984
No 313
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.87 E-value=3.9e-08 Score=102.20 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=27.9
Q ss_pred eEEEEEeCCCCc----c---hHHHHHHhhhhcCEEEEEEECCC
Q 010278 161 TRFTILDAPGHK----S---YVPNMISGASQADIGVLVISARK 196 (514)
Q Consensus 161 ~~i~liDtPGh~----~---f~~~~~~g~~~~D~ailVVda~~ 196 (514)
..+.|+|+||.. + .....++.++.||++++|||+..
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 468999999952 1 34456667899999999999973
No 314
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=1.9e-08 Score=86.21 Aligned_cols=149 Identities=18% Similarity=0.236 Sum_probs=96.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
+..+|..+|-.++||||++-.| ..+..+. .-.|+-......++.+.
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKL--kl~~~~~--------------------------------~ipTvGFnvetVtykN~ 61 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKL--KLGQSVT--------------------------------TIPTVGFNVETVTYKNV 61 (180)
T ss_pred ccceEEEEecccCCceehhhHH--hcCCCcc--------------------------------cccccceeEEEEEeeee
Confidence 3578999999999999998877 3332111 01122222334567789
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH----HHcCCCeEEEEEeeccCCCCC
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~----~~~~vp~~IvviNK~D~~~~~ 237 (514)
.|+.+|..|..+..+...+......++|+|+|+....- + ...++.+.-+ ....++ ++|..||-|++.+-
T Consensus 62 kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr---~---eeAr~ELh~ii~~~em~~~~-~LvlANkQDlp~A~ 134 (180)
T KOG0071|consen 62 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDR---I---EEARNELHRIINDREMRDAI-ILILANKQDLPDAM 134 (180)
T ss_pred EEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhh---H---HHHHHHHHHHhCCHhhhcce-EEEEecCccccccc
Confidence 99999999999988888888888899999999876421 0 1122222221 222466 88899999996542
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 280 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~ 280 (514)
..+++.+.+. |..+ . +...-+.|.||.+|+|+.+
T Consensus 135 ----~pqei~d~le--Le~~--r-~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 135 ----KPQEIQDKLE--LERI--R-DRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred ----CHHHHHHHhc--cccc--c-CCccEeeccccccchhHHH
Confidence 2334443332 1111 1 2346788999999999877
No 315
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.85 E-value=1e-08 Score=98.00 Aligned_cols=158 Identities=16% Similarity=0.226 Sum_probs=101.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.+.++++|..|+|||+|+|.+++.... ..++ ....|.|..+.++..
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~-------------~~t~---------------k~K~g~Tq~in~f~v--- 181 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNI-------------ADTS---------------KSKNGKTQAINHFHV--- 181 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhh-------------hhhc---------------CCCCccceeeeeeec---
Confidence 456789999999999999999988543221 1111 013677776655443
Q ss_pred CeEEEEEeCCCC----------c---chHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEE
Q 010278 160 TTRFTILDAPGH----------K---SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 226 (514)
Q Consensus 160 ~~~i~liDtPGh----------~---~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~Iv 226 (514)
+..+.++|.||. . +|.+.+...-.+-=-+.|+||+.-++ ++.+...+..+.+.++| +.+
T Consensus 182 ~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i-------~~~D~~~i~~~ge~~VP-~t~ 253 (320)
T KOG2486|consen 182 GKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPI-------QPTDNPEIAWLGENNVP-MTS 253 (320)
T ss_pred cceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCC-------CCCChHHHHHHhhcCCC-eEE
Confidence 678999999992 1 22333332223444578899999873 47888899999999999 999
Q ss_pred EEeeccCCCCCchHHH-----HHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 227 VVNKMDDHTVNWSKER-----YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 227 viNK~D~~~~~~~~~~-----~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
++||||.. |...+ ...++..+..+.... | ....|++.+|+.++.|++.|.
T Consensus 254 vfTK~DK~---k~~~~~~kKp~~~i~~~f~~l~~~~-f--~~~~Pw~~~Ssvt~~Grd~Ll 308 (320)
T KOG2486|consen 254 VFTKCDKQ---KKVKRTGKKPGLNIKINFQGLIRGV-F--LVDLPWIYVSSVTSLGRDLLL 308 (320)
T ss_pred eeehhhhh---hhccccccCccccceeehhhccccc-e--eccCCceeeecccccCceeee
Confidence 99999972 11110 001111111111111 1 125688899999999999864
No 316
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.84 E-value=1.2e-08 Score=80.19 Aligned_cols=68 Identities=34% Similarity=0.486 Sum_probs=61.2
Q ss_pred CeEEEEEEeeeeeecCCEEEEecC--CcE---EEEEEEEECCeeeeecCCCCeEEEEccCCCccc-ceeeeEEc
Q 010278 325 GTVVMGKVESGSVREGDSLLVMPN--KAQ---VKVLAIYCDDNRVRHAGPGENLRIRLSGIEEED-ILSGFVLS 392 (514)
Q Consensus 325 G~v~~g~v~sG~l~~gd~v~~~p~--~~~---~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~-i~~G~vl~ 392 (514)
|++++|||++|+|++||+|++.|. ... .+|++|+.++....++.+|+.+++.+......+ +++||+||
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 789999999999999999999773 244 999999999999999999999999888877888 89999986
No 317
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.84 E-value=5.8e-08 Score=92.68 Aligned_cols=139 Identities=19% Similarity=0.246 Sum_probs=82.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
++|.++|..|+||||++|.|+.....-. .......|...........++.+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~-----------------------------~~~~~~~t~~~~~~~~~~~g~~v 51 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKS-----------------------------GSSAKSVTQECQKYSGEVDGRQV 51 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS-------------------------------TTTSS--SS-EEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceee-----------------------------ccccCCcccccceeeeeecceEE
Confidence 5899999999999999999965432100 00113455555555667899999
Q ss_pred EEEeCCCCcc-------hHHHHHHh----hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-cC---CCeEEEEE
Q 010278 164 TILDAPGHKS-------YVPNMISG----ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LG---VTKLLLVV 228 (514)
Q Consensus 164 ~liDtPGh~~-------f~~~~~~g----~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~-~~---vp~~Ivvi 228 (514)
++|||||.-+ ..+++... ...++++|||+... .. ....+..+..+.. +| ..++||++
T Consensus 52 ~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~-------t~~~~~~l~~l~~~FG~~~~k~~ivvf 123 (212)
T PF04548_consen 52 TVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RF-------TEEDREVLELLQEIFGEEIWKHTIVVF 123 (212)
T ss_dssp EEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B--------SHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred EEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cc-------hHHHHHHHHHHHHHccHHHHhHhhHHh
Confidence 9999999533 23333332 34689999999988 32 2345555555443 34 35689999
Q ss_pred eeccCCCCCchHHHHHHHH-hhhhhhhhhccC
Q 010278 229 NKMDDHTVNWSKERYDEIE-SKMTPFLKASGY 259 (514)
Q Consensus 229 NK~D~~~~~~~~~~~~~i~-~~l~~~l~~~g~ 259 (514)
|..|....+--.+-++... ..++.+++.++-
T Consensus 124 T~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~ 155 (212)
T PF04548_consen 124 THADELEDDSLEDYLKKESNEALQELIEKCGG 155 (212)
T ss_dssp EEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhccccccccHHHHHhccCchhHhHHhhhcCC
Confidence 9999754332112222122 346777777763
No 318
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.82 E-value=1.2e-08 Score=93.32 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=44.1
Q ss_pred CCeEEEEEeCCCCcch----HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeec
Q 010278 159 ETTRFTILDAPGHKSY----VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 231 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f----~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~ 231 (514)
....+.|+||||.... ...+...+..+|++|+|+++..... .+..+.+........+++|+|+||+
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~-------~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLT-------ESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGG-------GHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccc-------hHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 3466999999996432 2334445689999999999998743 2344444444444555589999995
No 319
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.79 E-value=5.3e-08 Score=77.08 Aligned_cols=78 Identities=33% Similarity=0.454 Sum_probs=68.2
Q ss_pred ceEEEEEEEc--cCCeEEEEEEeeeeeecCCEEEEec--CCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceee
Q 010278 313 FRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMP--NKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 388 (514)
Q Consensus 313 ~~~~i~~~~~--~~G~v~~g~v~sG~l~~gd~v~~~p--~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G 388 (514)
+++.|.++++ ..|.+++|+|.+|+|++||.+.+.| .....+|++|+.++.+++++.||+.+++.+.... ++++|
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~~--~~~~g 78 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDKD--DIKIG 78 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEcccc--ccCCC
Confidence 3577888873 5789999999999999999999999 7788999999999999999999999999876433 78999
Q ss_pred eEEc
Q 010278 389 FVLS 392 (514)
Q Consensus 389 ~vl~ 392 (514)
++++
T Consensus 79 ~~l~ 82 (83)
T cd01342 79 DTLT 82 (83)
T ss_pred CEec
Confidence 9986
No 320
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=8.3e-08 Score=82.13 Aligned_cols=146 Identities=23% Similarity=0.289 Sum_probs=94.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC--C
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 160 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~--~ 160 (514)
...-.|+|..++|||-|+..+..+. |+.|. + .-|-+..+...++.. .
T Consensus 11 ifkyiiigdmgvgkscllhqftekk--------------------------fmadc-p----htigvefgtriievsgqk 59 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKK--------------------------FMADC-P----HTIGVEFGTRIIEVSGQK 59 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHH--------------------------HhhcC-C----cccceecceeEEEecCcE
Confidence 4567899999999999987773211 11121 1 122233333334444 4
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHH----HHHHHcCCCe--EEEEEeeccCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV----MLAKTLGVTK--LLLVVNKMDDH 234 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l----~~~~~~~vp~--~IvviNK~D~~ 234 (514)
.++.|+||+|+++|..-+.+..+.+-.+++|.|.+.. .|-.|+ .-++.+--|. ++++-||.|+
T Consensus 60 iklqiwdtagqerfravtrsyyrgaagalmvyditrr----------stynhlsswl~dar~ltnpnt~i~lignkadl- 128 (215)
T KOG0097|consen 60 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR----------STYNHLSSWLTDARNLTNPNTVIFLIGNKADL- 128 (215)
T ss_pred EEEEEeecccHHHHHHHHHHHhccccceeEEEEehhh----------hhhhhHHHHHhhhhccCCCceEEEEecchhhh-
Confidence 5788999999999988888888889999999998864 344444 3344444342 4456699998
Q ss_pred CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 235 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
.+.....|++. ..+..+- ...|+..||++|.|+++.
T Consensus 129 -e~qrdv~yeea----k~faeen------gl~fle~saktg~nveda 164 (215)
T KOG0097|consen 129 -ESQRDVTYEEA----KEFAEEN------GLMFLEASAKTGQNVEDA 164 (215)
T ss_pred -hhcccCcHHHH----HHHHhhc------CeEEEEecccccCcHHHH
Confidence 32222233333 3344443 457999999999999874
No 321
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.76 E-value=2.5e-08 Score=93.76 Aligned_cols=155 Identities=21% Similarity=0.171 Sum_probs=96.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhccc-EEEeeeEEEEeCC
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGK-TVEVGRAHFETET 160 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~gi-T~~~~~~~~~~~~ 160 (514)
+..+|+++|..++|||+|+-++++..-. . +..+-+ +.......+....
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~--~-----------------------------~y~ptied~y~k~~~v~~~~ 50 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFV--E-----------------------------DYDPTIEDSYRKELTVDGEV 50 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccc--c-----------------------------ccCCCccccceEEEEECCEE
Confidence 3578999999999999999877432211 0 000001 1111122233334
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-cCCCeEEEEEeeccCCCCCch
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~-~~vp~~IvviNK~D~~~~~~~ 239 (514)
..+.|+||+|.++|..+.-..+..+|+-++|.+.++-.. |+...+.++.+...+. ..+| +|+|.||+|+... .
T Consensus 51 ~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~S---F~~~~~l~~~I~r~~~~~~~P-ivlVGNK~Dl~~~--R 124 (196)
T KOG0395|consen 51 CMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSS---FEEAKQLREQILRVKGRDDVP-IILVGNKCDLERE--R 124 (196)
T ss_pred EEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHH---HHHHHHHHHHHHHhhCcCCCC-EEEEEEcccchhc--c
Confidence 567899999999999988888999999999999886421 2212233444422222 2478 9999999999321 1
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.... ++-..+...+ .++|+.+||+...|+++++.
T Consensus 125 ~V~~----eeg~~la~~~------~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 125 QVSE----EEGKALARSW------GCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred ccCH----HHHHHHHHhc------CCcEEEeeccCCcCHHHHHH
Confidence 1111 1222223333 36799999999999998644
No 322
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=1.6e-08 Score=87.08 Aligned_cols=153 Identities=19% Similarity=0.214 Sum_probs=97.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
+..++.++|--|+||||++=+| +.|.++. .-.|+......+++++-
T Consensus 17 ~e~rililgldGaGkttIlyrl--qvgevvt--------------------------------tkPtigfnve~v~yKNL 62 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRL--QVGEVVT--------------------------------TKPTIGFNVETVPYKNL 62 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEc--ccCcccc--------------------------------cCCCCCcCccccccccc
Confidence 5578999999999999987665 3332211 11233333445666888
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--cCCCeEEEEEeeccCCCCCch
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~--~~vp~~IvviNK~D~~~~~~~ 239 (514)
.+.++|..|.....+-+....+..|.+|+|||+.+-.- ....-.+...++.. +.-..++|+.||+|...+
T Consensus 63 k~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dr-----is~a~~el~~mL~E~eLq~a~llv~anKqD~~~~--- 134 (182)
T KOG0072|consen 63 KFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDR-----ISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA--- 134 (182)
T ss_pred cceeeEccCcccccHHHHHHhcccceEEEEEeccchhh-----hhhhHHHHHHHhccHhhcCceEEEEeccccchhh---
Confidence 99999999998888888888889999999999876421 11112222222222 222348899999997332
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
...+++...|.-..++ +..+.+|..||.+|+|+++.+
T Consensus 135 -----~t~~E~~~~L~l~~Lk-~r~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 135 -----LTRSEVLKMLGLQKLK-DRIWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred -----hhHHHHHHHhChHHHh-hheeEEEeeccccccCCcHHH
Confidence 2223322222111111 224789999999999999853
No 323
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.76 E-value=4.3e-08 Score=94.00 Aligned_cols=177 Identities=20% Similarity=0.115 Sum_probs=86.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCch---hhhhcccEEEeeeEE--
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNE---EERIKGKTVEVGRAH-- 155 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~---~e~~~giT~~~~~~~-- 155 (514)
.+..+|+|.|.||+|||||++.|......-..+- .- -+......-...+.+.|... .....|+-+-.-...
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~V-aV---lAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~ 102 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRV-AV---LAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGS 102 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--E-EE---EEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SS
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCce-EE---EEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCC
Confidence 4678999999999999999999954331100000 00 00000000012233334332 122234322221111
Q ss_pred --------------EEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCC
Q 010278 156 --------------FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV 221 (514)
Q Consensus 156 --------------~~~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~v 221 (514)
++..++.+.||.|-|--.- -+.-+..+|..++|+-...|.- ++..-.-.+.+
T Consensus 103 lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQs---E~~I~~~aD~~v~v~~Pg~GD~-----iQ~~KaGimEi------ 168 (266)
T PF03308_consen 103 LGGLSRATRDAVRLLDAAGFDVIIIETVGVGQS---EVDIADMADTVVLVLVPGLGDE-----IQAIKAGIMEI------ 168 (266)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTH---HHHHHTTSSEEEEEEESSTCCC-----CCTB-TTHHHH------
T ss_pred CCCccHhHHHHHHHHHHcCCCEEEEeCCCCCcc---HHHHHHhcCeEEEEecCCCccH-----HHHHhhhhhhh------
Confidence 2224678999999984321 1222578999999999888743 21211112222
Q ss_pred CeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccC-cccCCeeEEeeccccccccccccc
Q 010278 222 TKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY-NVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 222 p~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~-~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. |+||||.|+..+ +....+++..+....- ......|++.+||.+|.|+.++.+
T Consensus 169 aD-i~vVNKaD~~gA-------~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~ 223 (266)
T PF03308_consen 169 AD-IFVVNKADRPGA-------DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWE 223 (266)
T ss_dssp -S-EEEEE--SHHHH-------HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHH
T ss_pred cc-EEEEeCCChHHH-------HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHH
Confidence 32 579999997443 2333444444432211 001136999999999999999754
No 324
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.74 E-value=1.8e-08 Score=99.17 Aligned_cols=160 Identities=15% Similarity=0.216 Sum_probs=84.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCC------cchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcc---cEE
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQ------VDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKG---KTV 149 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~------i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g---iT~ 149 (514)
..+....|.|+|.+|||||||+++|+..... +........ . +.. -+..| +.+
T Consensus 100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~--D-----------a~r------I~~~g~pvvqi 160 (290)
T PRK10463 100 AARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVN--D-----------AAR------IRATGTPAIQV 160 (290)
T ss_pred HhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHH--H-----------HHH------HHhcCCcEEEe
Confidence 3567899999999999999999998765321 100000000 0 000 00111 111
Q ss_pred EeeeE-------------EEEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH
Q 010278 150 EVGRA-------------HFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 216 (514)
Q Consensus 150 ~~~~~-------------~~~~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~ 216 (514)
..+.. .+......+.||++-|.-..-... -+ ..+.-+.|++..+|.- +.. .+-
T Consensus 161 ~tG~~Chl~a~mv~~Al~~L~~~~~d~liIEnvGnLvcPa~f--dl-ge~~~v~vlsV~eg~d--------kpl---Kyp 226 (290)
T PRK10463 161 NTGKGCHLDAQMIADAAPRLPLDDNGILFIENVGNLVCPASF--DL-GEKHKVAVLSVTEGED--------KPL---KYP 226 (290)
T ss_pred cCCCCCcCcHHHHHHHHHHHhhcCCcEEEEECCCCccCCCcc--ch-hhceeEEEEECccccc--------cch---hcc
Confidence 11110 112234467788888841110000 01 1234567788776621 111 222
Q ss_pred HHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 217 KTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 217 ~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
..+... -+++|||+|+ .++....++.+.+.++. +. ...+++++||++|+|++++.
T Consensus 227 ~~f~~A-DIVVLNKiDL--l~~~~~dle~~~~~lr~----ln----p~a~I~~vSA~tGeGld~L~ 281 (290)
T PRK10463 227 HMFAAA-SLMLLNKVDL--LPYLNFDVEKCIACARE----VN----PEIEIILISATSGEGMDQWL 281 (290)
T ss_pred chhhcC-cEEEEEhHHc--CcccHHHHHHHHHHHHh----hC----CCCcEEEEECCCCCCHHHHH
Confidence 334455 4689999999 44333344444444433 22 24689999999999998853
No 325
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.72 E-value=6.4e-08 Score=83.10 Aligned_cols=154 Identities=21% Similarity=0.234 Sum_probs=97.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|.++|--++||||++.+|-.... +. .-+..|..+ ..+++.
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~----~h--------------------------ltpT~GFn~----k~v~~~ 59 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDP----RH--------------------------LTPTNGFNT----KKVEYD 59 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCCh----hh--------------------------ccccCCcce----EEEeec
Confidence 35678999999999999999998822110 00 111133332 234444
Q ss_pred C-eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH---HcCCCeEEEEEeeccCCC
Q 010278 160 T-TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK---TLGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 160 ~-~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~---~~~vp~~IvviNK~D~~~ 235 (514)
+ .+++++|..|++....-+.......|..|+|||+++.-+ |+ ....+...++. ...+| +.+..||-|+..
T Consensus 60 g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~kr---fe--E~~~el~ELleeeKl~~vp-vlIfankQdllt 133 (185)
T KOG0074|consen 60 GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKR---FE--EISEELVELLEEEKLAEVP-VLIFANKQDLLT 133 (185)
T ss_pred CcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHh---HH--HHHHHHHHHhhhhhhhccc-eeehhhhhHHHh
Confidence 4 899999999998877777777889999999999877543 11 12222223332 23578 788999999843
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
+. ..+++...+.- .++. ...+.+-.+||++++|+...+
T Consensus 134 aa----~~eeia~klnl----~~lr-dRswhIq~csals~eg~~dg~ 171 (185)
T KOG0074|consen 134 AA----KVEEIALKLNL----AGLR-DRSWHIQECSALSLEGSTDGS 171 (185)
T ss_pred hc----chHHHHHhcch----hhhh-hceEEeeeCccccccCccCcc
Confidence 31 22233322221 1111 124677889999999988753
No 326
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.72 E-value=3.4e-08 Score=91.84 Aligned_cols=153 Identities=16% Similarity=0.221 Sum_probs=109.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC-e
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-T 161 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~-~ 161 (514)
...|.++|..|||||+|=..+.....+. +-+..|-||++.+.+..+-+ -
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~------------------------------D~~rlg~tidveHsh~RflGnl 53 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIAR------------------------------DTRRLGATIDVEHSHVRFLGNL 53 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhh------------------------------hhhccCCcceeeehhhhhhhhh
Confidence 4578999999999999866553211110 23447889998887776544 7
Q ss_pred EEEEEeCCCCcchHHHHHHh-----hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-CCCeEEEEEeeccCCC
Q 010278 162 RFTILDAPGHKSYVPNMISG-----ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMDDHT 235 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g-----~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~-~vp~~IvviNK~D~~~ 235 (514)
.++++|+.|.+.|+.+..+. .+..++.|.|.|+....+++++. .....|..+.+. -..++.+.+.|||+..
T Consensus 54 ~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~---~yqk~Le~ll~~SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 54 VLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFH---YYQKCLEALLQNSPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred eeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHH---HHHHHHHHHHhcCCcceEEEEEeechhcc
Confidence 88999999999999998874 46789999999999888776654 344444444443 2345888999999988
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM 274 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~ 274 (514)
.+-.+..|++-...+..+-+.++ +..+|+|-+.
T Consensus 131 ~d~r~~if~~r~~~l~~~s~~~~------~~~f~TsiwD 163 (295)
T KOG3886|consen 131 EDARELIFQRRKEDLRRLSRPLE------CKCFPTSIWD 163 (295)
T ss_pred cchHHHHHHHHHHHHHHhccccc------ccccccchhh
Confidence 87777777777766655443332 4577877644
No 327
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.68 E-value=7.9e-08 Score=84.52 Aligned_cols=147 Identities=20% Similarity=0.224 Sum_probs=94.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcch---hHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDD---RTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~---~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.++.++|..-+|||+|+..+ +.|.... .++ +--.++.+ .|-..|. .
T Consensus 9 frlivigdstvgkssll~~f--t~gkfaelsdptv------------gvdffarl-----ie~~pg~------------r 57 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYF--TEGKFAELSDPTV------------GVDFFARL-----IELRPGY------------R 57 (213)
T ss_pred EEEEEEcCCcccHHHHHHHH--hcCcccccCCCcc------------chHHHHHH-----HhcCCCc------------E
Confidence 57889999999999999876 4443211 100 00001111 1111222 2
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHH----HH-HcCCC---eEEEEEeecc
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML----AK-TLGVT---KLLLVVNKMD 232 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~----~~-~~~vp---~~IvviNK~D 232 (514)
.++.|+||+|+++|..-+.+..+++=++++|.|.+.. ...||... +. ..+-| -|.+|-.|.|
T Consensus 58 iklqlwdtagqerfrsitksyyrnsvgvllvyditnr----------~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsD 127 (213)
T KOG0091|consen 58 IKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNR----------ESFEHVENWVKEAAMATQGPDKVVFLLVGHKSD 127 (213)
T ss_pred EEEEEeeccchHHHHHHHHHHhhcccceEEEEeccch----------hhHHHHHHHHHHHHHhcCCCCeeEEEEeccccc
Confidence 4678999999999999998889999999999998764 33444322 11 12212 2556779999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+ .. ..+-..++-+.+.+..|+ .||.+||++|.|+++-+.
T Consensus 128 L--~S----qRqVt~EEaEklAa~hgM------~FVETSak~g~NVeEAF~ 166 (213)
T KOG0091|consen 128 L--QS----QRQVTAEEAEKLAASHGM------AFVETSAKNGCNVEEAFD 166 (213)
T ss_pred h--hh----hccccHHHHHHHHHhcCc------eEEEecccCCCcHHHHHH
Confidence 9 32 222334455556666664 699999999999998544
No 328
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=98.67 E-value=2.6e-07 Score=72.75 Aligned_cols=75 Identities=23% Similarity=0.413 Sum_probs=58.7
Q ss_pred CCceEEEEEE--EccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceee
Q 010278 311 GPFRMPIIDK--FKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 388 (514)
Q Consensus 311 ~p~~~~i~~~--~~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G 388 (514)
.|.++.|... |..++ ++.|+|..|+|++|..| .+..-.+|++|+.+++++++|.+|+.|++.+.|.. ++..|
T Consensus 3 ~p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l---~G~~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~~--~i~eG 76 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL---DGRKIGRIKSIEDNGKNVDEAKKGDEVAISIEGPT--QIKEG 76 (81)
T ss_dssp -SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE---CSSCEEEEEEEEETTEEESEEETT-EEEEEEET----TB-TT
T ss_pred CceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc---CCEEEEEEEEeEECCcCccccCCCCEEEEEEeCCc--cCCCC
Confidence 3556666654 56777 78889999999999999 45578899999999999999999999999999854 78999
Q ss_pred eEE
Q 010278 389 FVL 391 (514)
Q Consensus 389 ~vl 391 (514)
|+|
T Consensus 77 DiL 79 (81)
T PF14578_consen 77 DIL 79 (81)
T ss_dssp -EE
T ss_pred CEE
Confidence 987
No 329
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.67 E-value=1.1e-07 Score=89.75 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=57.4
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~ 239 (514)
+..+.+|+|.|-. ..... . -..+|.+|.|+|+.++.. ... ....+.... =++++||+|+.. ..
T Consensus 91 ~~D~iiIEt~G~~-l~~~~-~-~~l~~~~i~vvD~~~~~~---------~~~--~~~~qi~~a-d~~~~~k~d~~~--~~ 153 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATF-S-PELADLTIFVIDVAAGDK---------IPR--KGGPGITRS-DLLVINKIDLAP--MV 153 (199)
T ss_pred CCCEEEEECCCCC-ccccc-c-hhhhCcEEEEEEcchhhh---------hhh--hhHhHhhhc-cEEEEEhhhccc--cc
Confidence 4567899999931 11111 1 123688999999998731 111 111122222 268999999942 11
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
....+.+.+.++. ++ ...+++++||++|+|+.++++
T Consensus 154 ~~~~~~~~~~~~~----~~----~~~~i~~~Sa~~g~gi~el~~ 189 (199)
T TIGR00101 154 GADLGVMERDAKK----MR----GEKPFIFTNLKTKEGLDTVID 189 (199)
T ss_pred cccHHHHHHHHHH----hC----CCCCEEEEECCCCCCHHHHHH
Confidence 2233333343333 22 247899999999999998543
No 330
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.65 E-value=1.8e-07 Score=90.92 Aligned_cols=104 Identities=19% Similarity=0.234 Sum_probs=61.9
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
.++.+.||.|-|--.-- ..-...+|..++|.=+..|.- -|... .-.+-+. =|+||||+|+..++
T Consensus 142 aG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~-------~Q~iK----~GimEia-Di~vINKaD~~~A~- 205 (323)
T COG1703 142 AGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDD-------LQGIK----AGIMEIA-DIIVINKADRKGAE- 205 (323)
T ss_pred cCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcH-------HHHHH----hhhhhhh-heeeEeccChhhHH-
Confidence 36778889988842211 112467899999988776631 12211 1222333 26799999984432
Q ss_pred hHHHHHHHHhhhhhh---hhhccCcccCCeeEEeecccccccccccccc
Q 010278 239 SKERYDEIESKMTPF---LKASGYNVKKDVQFLPISGLMGLNMKTRVDK 284 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~---l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~ 284 (514)
..+.++...+... -...+| ..|++.+||.+|+|+.+|++.
T Consensus 206 --~a~r~l~~al~~~~~~~~~~~W----~ppv~~t~A~~g~Gi~~L~~a 248 (323)
T COG1703 206 --KAARELRSALDLLREVWRENGW----RPPVVTTSALEGEGIDELWDA 248 (323)
T ss_pred --HHHHHHHHHHHhhcccccccCC----CCceeEeeeccCCCHHHHHHH
Confidence 2333333333222 233344 469999999999999997653
No 331
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=1.2e-07 Score=83.72 Aligned_cols=116 Identities=20% Similarity=0.179 Sum_probs=82.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
++.-.+.++|--|+|||||+..|- ...+. ..-.|.+.....+...+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLK--dDrl~--------------------------------qhvPTlHPTSE~l~Ig~ 63 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLK--DDRLG--------------------------------QHVPTLHPTSEELSIGG 63 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHc--ccccc--------------------------------ccCCCcCCChHHheecC
Confidence 345679999999999999999882 11100 01123333444466678
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~ 236 (514)
-.++-+|..||..-.+-.......+|.++++|||.+-.- -...++++..+.. ..+| +++..||+|.+.+
T Consensus 64 m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er------~~es~~eld~ll~~e~la~vp-~lilgnKId~p~a 136 (193)
T KOG0077|consen 64 MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQER------FAESKKELDALLSDESLATVP-FLILGNKIDIPYA 136 (193)
T ss_pred ceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHH------hHHHHHHHHHHHhHHHHhcCc-ceeecccccCCCc
Confidence 899999999998777777777789999999999976432 1245566555443 4688 8899999999765
Q ss_pred C
Q 010278 237 N 237 (514)
Q Consensus 237 ~ 237 (514)
-
T Consensus 137 ~ 137 (193)
T KOG0077|consen 137 A 137 (193)
T ss_pred c
Confidence 3
No 332
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=3.1e-08 Score=86.50 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=74.1
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK~D~~~~~ 237 (514)
..+.||||+|+++|...+..-.+.|-.-+|+.|-+..- .| -.++..+.+++.. .-|.+|++-||.|+ .+
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eq---SF---LnvrnWlSQL~~hAYcE~PDivlcGNK~DL--~~ 138 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQ---SF---LNVRNWLSQLQTHAYCENPDIVLCGNKADL--ED 138 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchH---HH---HHHHHHHHHHHHhhccCCCCEEEEcCccch--hh
Confidence 45789999999999998888888999999999976431 11 1445555555443 34669999999999 32
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+..-..++...+..++| +|++.+||-+|.|+.+..+
T Consensus 139 ----~R~Vs~~qa~~La~kyg------lPYfETSA~tg~Nv~kave 174 (219)
T KOG0081|consen 139 ----QRVVSEDQAAALADKYG------LPYFETSACTGTNVEKAVE 174 (219)
T ss_pred ----hhhhhHHHHHHHHHHhC------CCeeeeccccCcCHHHHHH
Confidence 11122233444555555 5899999999999987544
No 333
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.63 E-value=3.7e-07 Score=97.84 Aligned_cols=118 Identities=19% Similarity=0.160 Sum_probs=71.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
-.++|+++|.+|+|||||+|.|+....... .....+ |...........+.
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~v-----------------------------ss~~~~-TTr~~ei~~~idG~ 166 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFST-----------------------------DAFGMG-TTSVQEIEGLVQGV 166 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccc-----------------------------cCCCCC-ceEEEEEEEEECCc
Confidence 357899999999999999999965432110 001123 33333444556789
Q ss_pred EEEEEeCCCCcch------HHHHHH----hhh--hcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-cC---CCeEE
Q 010278 162 RFTILDAPGHKSY------VPNMIS----GAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LG---VTKLL 225 (514)
Q Consensus 162 ~i~liDtPGh~~f------~~~~~~----g~~--~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~-~~---vp~~I 225 (514)
.++||||||..+. ...++. .+. .+|++|+|+....... ..+....+..+.. +| ..++|
T Consensus 167 ~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~------D~eD~~aLr~Iq~lFG~~Iwk~tI 240 (763)
T TIGR00993 167 KIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTR------DSNDLPLLRTITDVLGPSIWFNAI 240 (763)
T ss_pred eEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccc------cHHHHHHHHHHHHHhCHHhHcCEE
Confidence 9999999997643 122222 222 4798888876543211 0122233333322 34 45789
Q ss_pred EEEeeccCCC
Q 010278 226 LVVNKMDDHT 235 (514)
Q Consensus 226 vviNK~D~~~ 235 (514)
|++|..|...
T Consensus 241 VVFThgD~lp 250 (763)
T TIGR00993 241 VTLTHAASAP 250 (763)
T ss_pred EEEeCCccCC
Confidence 9999999964
No 334
>PTZ00258 GTP-binding protein; Provisional
Probab=98.61 E-value=1.2e-07 Score=97.65 Aligned_cols=84 Identities=20% Similarity=0.146 Sum_probs=58.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC-
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 159 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~- 159 (514)
.....|+|+|.||+|||||+|+|...... .....+.|++.....+...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~-------------------------------v~n~pftTi~p~~g~v~~~d 67 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVP-------------------------------AENFPFCTIDPNTARVNVPD 67 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCccc-------------------------------ccCCCCCcccceEEEEeccc
Confidence 45578999999999999999999322111 1222556655554444443
Q ss_pred ----------------CeEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECC
Q 010278 160 ----------------TTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISAR 195 (514)
Q Consensus 160 ----------------~~~i~liDtPGh~~-------f~~~~~~g~~~~D~ailVVda~ 195 (514)
..++.|+||||... .....+..++.+|++++|||+.
T Consensus 68 ~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 68 ERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred chhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 23589999999432 3445566788999999999985
No 335
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.61 E-value=1.4e-07 Score=92.09 Aligned_cols=144 Identities=18% Similarity=0.185 Sum_probs=92.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEE-e
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-T 158 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~-~ 158 (514)
....+.|+++|-.|+|||||+++|. ......+.+++ -|.+....... -
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT-~Aal~p~drLF------------------------------ATLDpT~h~a~Lp 223 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALT-KAALYPNDRLF------------------------------ATLDPTLHSAHLP 223 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHH-hhhcCccchhh------------------------------eeccchhhhccCC
Confidence 3456899999999999999999995 22221111110 11111111111 1
Q ss_pred CCeEEEEEeCCCCcchHHHH--------HHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCC------eE
Q 010278 159 ETTRFTILDAPGHKSYVPNM--------ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT------KL 224 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~--------~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp------~~ 224 (514)
++..+.|.||-|.-.-++.. +.-...+|+.|-|+|.+++..| .|-...+..++.+|+| .+
T Consensus 224 sg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae------~q~e~Vl~vL~~igv~~~pkl~~m 297 (410)
T KOG0410|consen 224 SGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAE------EQRETVLHVLNQIGVPSEPKLQNM 297 (410)
T ss_pred CCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHH------HHHHHHHHHHHhcCCCcHHHHhHH
Confidence 45678999999965443333 3334679999999999998654 6777788889999986 34
Q ss_pred EEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 225 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 225 IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
|=|=||+|.... +.+ . +..-.+++|+++|+|+.++.
T Consensus 298 ieVdnkiD~e~~-~~e-------~--------------E~n~~v~isaltgdgl~el~ 333 (410)
T KOG0410|consen 298 IEVDNKIDYEED-EVE-------E--------------EKNLDVGISALTGDGLEELL 333 (410)
T ss_pred Hhhccccccccc-cCc-------c--------------ccCCccccccccCccHHHHH
Confidence 556678876211 110 0 01126899999999999853
No 336
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.61 E-value=8.6e-08 Score=94.46 Aligned_cols=80 Identities=15% Similarity=0.118 Sum_probs=53.7
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC-----
Q 010278 86 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET----- 160 (514)
Q Consensus 86 v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~----- 160 (514)
|+|+|.||+|||||+|+|...... .....+.|++.....+...+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~-------------------------------~~n~pftTi~p~~g~v~v~d~r~~~ 49 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAE-------------------------------AANYPFCTIEPNVGIVPVPDERLDK 49 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCc-------------------------------cccccccchhceeeeEEeccchhhh
Confidence 689999999999999999432211 11224555554443333332
Q ss_pred ------------eEEEEEeCCCCc-------chHHHHHHhhhhcCEEEEEEECCC
Q 010278 161 ------------TRFTILDAPGHK-------SYVPNMISGASQADIGVLVISARK 196 (514)
Q Consensus 161 ------------~~i~liDtPGh~-------~f~~~~~~g~~~~D~ailVVda~~ 196 (514)
..+.|+|+||.. ......+..++.+|++++|||+..
T Consensus 50 l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 50 LAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred HHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 259999999943 234455666789999999999853
No 337
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.57 E-value=1.7e-07 Score=95.41 Aligned_cols=82 Identities=16% Similarity=0.137 Sum_probs=55.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC---
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--- 160 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~--- 160 (514)
+.|+++|.||+|||||+|+|...... .....+.|++.....+...+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~-------------------------------v~nypftTi~p~~G~~~v~d~r~ 51 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAE-------------------------------AANYPFCTIEPNVGVVPVPDPRL 51 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCe-------------------------------ecccccccccceEEEEEeccccc
Confidence 68999999999999999999432211 11224555444333332222
Q ss_pred --------------eEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCC
Q 010278 161 --------------TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 196 (514)
Q Consensus 161 --------------~~i~liDtPGh~~-------f~~~~~~g~~~~D~ailVVda~~ 196 (514)
..+.|+|+||... .....+..++.||++++|||+..
T Consensus 52 ~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 52 DKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred hhhHHhcCCccccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 2589999999432 34456666789999999999853
No 338
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.56 E-value=8.6e-07 Score=88.03 Aligned_cols=142 Identities=16% Similarity=0.271 Sum_probs=80.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC--
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 160 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~-- 160 (514)
.++|.++|..|+|||||+|.|+.......... .+.......+..++......+..++
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~---------------------~~~~~~~~~~~~~i~~~~~~l~e~~~~ 62 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSS---------------------IPPPSASISRTLEIEERTVELEENGVK 62 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS------------------------------S------SCEEEEEEEEEEEETCEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhccccccccc---------------------ccccccccccccceeeEEEEeccCCcc
Confidence 47999999999999999999965322211100 0000011223344444444444443
Q ss_pred eEEEEEeCCCCcch-------------HHHHHHh------------h--hhcCEEEEEEECCC-CcccccccCCcchHHH
Q 010278 161 TRFTILDAPGHKSY-------------VPNMISG------------A--SQADIGVLVISARK-GEFETGFEKGGQTREH 212 (514)
Q Consensus 161 ~~i~liDtPGh~~f-------------~~~~~~g------------~--~~~D~ailVVda~~-g~~e~~~~~~~qt~e~ 212 (514)
..++|+||||+-+. +...... . ...|++|+.|+++. |. ....
T Consensus 63 l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L----------~~~D 132 (281)
T PF00735_consen 63 LNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGL----------KPLD 132 (281)
T ss_dssp EEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-----------HHH
T ss_pred eEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccc----------hHHH
Confidence 46899999995432 1111111 0 24799999999863 42 2333
Q ss_pred HHHHHHcC--CCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCc
Q 010278 213 VMLAKTLG--VTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 260 (514)
Q Consensus 213 l~~~~~~~--vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~ 260 (514)
+..++.+. ++ +|-||.|.|.. ..+..+..+..+...|+..++.
T Consensus 133 i~~mk~Ls~~vN-vIPvIaKaD~l----t~~el~~~k~~i~~~l~~~~I~ 177 (281)
T PF00735_consen 133 IEFMKRLSKRVN-VIPVIAKADTL----TPEELQAFKQRIREDLEENNIK 177 (281)
T ss_dssp HHHHHHHTTTSE-EEEEESTGGGS-----HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHhccccc-EEeEEeccccc----CHHHHHHHHHHHHHHHHHcCce
Confidence 44444443 56 89999999983 4567888888888888876653
No 339
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.50 E-value=1.5e-07 Score=86.15 Aligned_cols=94 Identities=17% Similarity=0.212 Sum_probs=54.9
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcC-EEEEEEECCCCcccccccCCcchHH-HHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQAD-IGVLVISARKGEFETGFEKGGQTRE-HVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D-~ailVVda~~g~~e~~~~~~~qt~e-~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
..+.||-..| ....... -...| .-|+|||..+|.-- + +. +=.+ .. . =+++|||.|+ +.+
T Consensus 97 ~Dll~iEs~G--NL~~~~s--p~L~d~~~v~VidvteGe~~------P--~K~gP~i---~~-a-DllVInK~DL--a~~ 157 (202)
T COG0378 97 LDLLFIESVG--NLVCPFS--PDLGDHLRVVVIDVTEGEDI------P--RKGGPGI---FK-A-DLLVINKTDL--APY 157 (202)
T ss_pred CCEEEEecCc--ceecccC--cchhhceEEEEEECCCCCCC------c--ccCCCce---eE-e-eEEEEehHHh--HHH
Confidence 4688899888 2222111 12445 89999999998520 1 00 0000 01 1 2679999999 433
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
-....+...+..+ +. +++.|||.+|+++|+|++++
T Consensus 158 v~~dlevm~~da~----~~----np~~~ii~~n~ktg~G~~~~ 192 (202)
T COG0378 158 VGADLEVMARDAK----EV----NPEAPIIFTNLKTGEGLDEW 192 (202)
T ss_pred hCccHHHHHHHHH----Hh----CCCCCEEEEeCCCCcCHHHH
Confidence 2222233333322 22 24689999999999999874
No 340
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.47 E-value=9.1e-07 Score=71.51 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=62.3
Q ss_pred CCCceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC----CeeeeecCCCCeEEEEccCCCcc
Q 010278 310 NGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEE 383 (514)
Q Consensus 310 ~~p~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~~~l~~~~~~ 383 (514)
+.||.+.|..+. +..|.++++||.+|+|+.||.|.... ....+|..|+.. ..++++|.|||+|++ .++ .
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai--~gl--~ 75 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAIL--TGL--K 75 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEE--ECC--C
Confidence 368888888886 45799999999999999999998754 445677788654 468899999999985 555 3
Q ss_pred cceeeeEEc
Q 010278 384 DILSGFVLS 392 (514)
Q Consensus 384 ~i~~G~vl~ 392 (514)
+++.||+|+
T Consensus 76 ~~~~Gdtl~ 84 (85)
T cd03690 76 GLRVGDVLG 84 (85)
T ss_pred CCcCccccC
Confidence 477899885
No 341
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.46 E-value=1.1e-06 Score=70.63 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=59.9
Q ss_pred EEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC----CeeeeecCCCCeEEEEccCCCcccceee
Q 010278 315 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSG 388 (514)
Q Consensus 315 ~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G 388 (514)
..|.+++ +..|.++.+||.+|+|+.||.|.+...+...+|..|... ..++++|.|||++++ .|+ .+++.|
T Consensus 3 a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~gl--~~~~~G 78 (83)
T cd04092 3 ALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVI--TGL--KQTRTG 78 (83)
T ss_pred EEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEE--ECC--CCcccC
Confidence 4555555 346999999999999999999998776667788888654 568999999999995 555 348899
Q ss_pred eEEcc
Q 010278 389 FVLSS 393 (514)
Q Consensus 389 ~vl~~ 393 (514)
|+|+.
T Consensus 79 dtl~~ 83 (83)
T cd04092 79 DTLVT 83 (83)
T ss_pred CEEeC
Confidence 99873
No 342
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=98.44 E-value=1.5e-06 Score=69.92 Aligned_cols=75 Identities=19% Similarity=0.317 Sum_probs=60.3
Q ss_pred EEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC----CeeeeecCCCCeEEEEccCCCcccceee
Q 010278 315 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSG 388 (514)
Q Consensus 315 ~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G 388 (514)
..|.+++ +..|.++++||.+|+|+.||.|.+...+...+|..|... ..++++|.|||++.+ .|++. ++.|
T Consensus 3 a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~g~~~--~~~G 78 (83)
T cd04088 3 ALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAV--AGLKD--TATG 78 (83)
T ss_pred EEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEE--ECCCC--CccC
Confidence 4455554 346999999999999999999998877777888888654 468899999999996 66543 8899
Q ss_pred eEEcc
Q 010278 389 FVLSS 393 (514)
Q Consensus 389 ~vl~~ 393 (514)
|+|++
T Consensus 79 dtl~~ 83 (83)
T cd04088 79 DTLCD 83 (83)
T ss_pred CEeeC
Confidence 99863
No 343
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=98.40 E-value=3e-06 Score=68.61 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=60.9
Q ss_pred ceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC---CeeeeecCCCCeEEEEccCC-Ccccce
Q 010278 313 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGI-EEEDIL 386 (514)
Q Consensus 313 ~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~---~~~v~~a~aG~~v~~~l~~~-~~~~i~ 386 (514)
|.+.|..+. +..|.++.+||.+|+|+.||.|++...+...+|..|... ..+++++.|||++.+. .++ ...+++
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~-~g~~~l~~~~ 79 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQVGYII-AGIKTVKDAR 79 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEECCCccCCceECCCCEEEEE-ccccccCccc
Confidence 345666665 457999999999999999999998776666777777654 4578999999999973 222 124588
Q ss_pred eeeEEcc
Q 010278 387 SGFVLSS 393 (514)
Q Consensus 387 ~G~vl~~ 393 (514)
.||+|++
T Consensus 80 ~Gdtl~~ 86 (86)
T cd03699 80 VGDTITL 86 (86)
T ss_pred cccEeeC
Confidence 9999874
No 344
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.39 E-value=9.6e-08 Score=81.05 Aligned_cols=104 Identities=18% Similarity=0.235 Sum_probs=69.9
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCC
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 235 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK~D~~~ 235 (514)
...++.++||+|+++|..-+-...+.+|..+|+.|..... .|+ +.+..+..+... .+. +.++-||+|+..
T Consensus 45 ~kvklqiwdtagqerfrsvt~ayyrda~allllydianka---sfd---n~~~wlsei~ey~k~~v~-l~llgnk~d~a~ 117 (192)
T KOG0083|consen 45 KKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKA---SFD---NCQAWLSEIHEYAKEAVA-LMLLGNKCDLAH 117 (192)
T ss_pred cEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccch---hHH---HHHHHHHHHHHHHHhhHh-Hhhhccccccch
Confidence 4567899999999999998888889999999999966532 122 344444444443 355 667899999832
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
. +.- -.++=..+.+.+ .+||..+||++|.|++..
T Consensus 118 e-----r~v-~~ddg~kla~~y------~ipfmetsaktg~nvd~a 151 (192)
T KOG0083|consen 118 E-----RAV-KRDDGEKLAEAY------GIPFMETSAKTGFNVDLA 151 (192)
T ss_pred h-----hcc-ccchHHHHHHHH------CCCceeccccccccHhHH
Confidence 1 100 011112233344 369999999999999863
No 345
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=98.37 E-value=3.6e-06 Score=68.13 Aligned_cols=76 Identities=22% Similarity=0.417 Sum_probs=59.0
Q ss_pred ceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCC---cEEEEEEEEEC----CeeeeecCCCCeEEEEccCCCcc
Q 010278 313 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEE 383 (514)
Q Consensus 313 ~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~---~~~~V~si~~~----~~~v~~a~aG~~v~~~l~~~~~~ 383 (514)
|++.|.++. +..|.++++||.+|+|++||.|.+...+ ...+|.+|... ..+++++.|||+++ +.++ .
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~--i~gl--~ 76 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVA--IAGI--E 76 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEE--EECC--C
Confidence 467777765 4579999999999999999999876553 24677787543 46889999999997 4555 3
Q ss_pred cceeeeEEc
Q 010278 384 DILSGFVLS 392 (514)
Q Consensus 384 ~i~~G~vl~ 392 (514)
+++.||+|+
T Consensus 77 ~~~~Gdtl~ 85 (86)
T cd03691 77 DITIGDTIC 85 (86)
T ss_pred CCcccceec
Confidence 478999885
No 346
>PRK14974 cell division protein FtsY; Provisional
Probab=98.35 E-value=8.2e-06 Score=82.84 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=56.1
Q ss_pred CCeEEEEEeCCCCcchHHHHHHh------hhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-HHcCCCeEEEEEeec
Q 010278 159 ETTRFTILDAPGHKSYVPNMISG------ASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLGVTKLLLVVNKM 231 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g------~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~-~~~~vp~~IvviNK~ 231 (514)
.++.+.||||||....-.+.+.. ...+|..+||+||..| ....+.+... ...++. -+++||+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g---------~d~~~~a~~f~~~~~~~--giIlTKl 289 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAG---------NDAVEQAREFNEAVGID--GVILTKV 289 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccc---------hhHHHHHHHHHhcCCCC--EEEEeee
Confidence 35679999999965432222222 2368999999999876 2233333332 346776 3589999
Q ss_pred cCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 232 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 232 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
|.... +-.+.+... .. ..|+..++ +|++++++
T Consensus 290 D~~~~------~G~~ls~~~----~~------~~Pi~~i~--~Gq~v~Dl 321 (336)
T PRK14974 290 DADAK------GGAALSIAY----VI------GKPILFLG--VGQGYDDL 321 (336)
T ss_pred cCCCC------ccHHHHHHH----HH------CcCEEEEe--CCCChhhc
Confidence 98321 112222211 11 35788887 69999765
No 347
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=5.1e-06 Score=88.52 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=48.4
Q ss_pred EEEEEeCCCCc---chHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCC
Q 010278 162 RFTILDAPGHK---SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 234 (514)
Q Consensus 162 ~i~liDtPGh~---~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~ 234 (514)
.+.++|.||.. .+......-.-.+|+.|||+.|....+ ++..++......+.|+++|+.||||..
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt--------~sek~Ff~~vs~~KpniFIlnnkwDas 274 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLT--------LSEKQFFHKVSEEKPNIFILNNKWDAS 274 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhH--------HHHHHHHHHhhccCCcEEEEechhhhh
Confidence 58999999953 333333344568999999999987643 677777666666788899999999983
No 348
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.32 E-value=2.6e-06 Score=80.36 Aligned_cols=87 Identities=25% Similarity=0.237 Sum_probs=59.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
...-+|+++|-|.+|||||+..+..+... + ..|. =.|......-+.+++
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~Se------------a-------A~ye------------FTTLtcIpGvi~y~g 108 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSE------------A-------ASYE------------FTTLTCIPGVIHYNG 108 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhh------------h-------hcee------------eeEEEeecceEEecC
Confidence 34578999999999999999887321110 0 0011 123333344577889
Q ss_pred eEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCc
Q 010278 161 TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGE 198 (514)
Q Consensus 161 ~~i~liDtPGh~~-------f~~~~~~g~~~~D~ailVVda~~g~ 198 (514)
-.|.++|.||.-. .-++.++.++.||.+++|+||+.+.
T Consensus 109 a~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e 153 (364)
T KOG1486|consen 109 ANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSE 153 (364)
T ss_pred ceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcch
Confidence 9999999999522 2445556678899999999999863
No 349
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=98.32 E-value=4.9e-06 Score=66.59 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=58.5
Q ss_pred EEEEEEE-ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC----CeeeeecCCCCeEEEEccCCCcccceeee
Q 010278 315 MPIIDKF-KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGF 389 (514)
Q Consensus 315 ~~i~~~~-~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G~ 389 (514)
..|..+. ...|.++.+||.+|+|++||.|.+...+...+|..|... ..+++++.|||+++ +.++ . ++.||
T Consensus 3 a~vfK~~~~~~G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~--i~g~--~-~~~Gd 77 (81)
T cd04091 3 GLAFKLEEGRFGQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICA--IFGI--D-CASGD 77 (81)
T ss_pred EEEEEeecCCCCCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEE--EECC--C-cccCC
Confidence 3444443 234999999999999999999999887777888888654 46899999999999 4554 3 78999
Q ss_pred EEcc
Q 010278 390 VLSS 393 (514)
Q Consensus 390 vl~~ 393 (514)
+|++
T Consensus 78 tl~~ 81 (81)
T cd04091 78 TFTD 81 (81)
T ss_pred EecC
Confidence 9863
No 350
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.32 E-value=1.4e-06 Score=89.63 Aligned_cols=156 Identities=16% Similarity=0.212 Sum_probs=85.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
...+++.++|-||+|||++++.+......+. .|+| .|-.+-..++.+.-
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevq-------------------pYaF------------TTksL~vGH~dykY 214 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQ-------------------PYAF------------TTKLLLVGHLDYKY 214 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccC-------------------Cccc------------ccchhhhhhhhhhe
Confidence 4568899999999999999887722111110 1111 11111223344555
Q ss_pred eEEEEEeCCCCcch------HHHH--HHhh-hhcCEEEEEEECCCCcccccccCCcchHH-HHHHHHHcCCCeEEEEEee
Q 010278 161 TRFTILDAPGHKSY------VPNM--ISGA-SQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKTLGVTKLLLVVNK 230 (514)
Q Consensus 161 ~~i~liDtPGh~~f------~~~~--~~g~-~~~D~ailVVda~~g~~e~~~~~~~qt~e-~l~~~~~~~vp~~IvviNK 230 (514)
.++.+|||||.-+- +-+| +.++ ..--++++++|-++-. |+++..|..- |-.--.-.+-| +|+|+||
T Consensus 215 lrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~C---GySva~QvkLfhsIKpLFaNK~-~IlvlNK 290 (620)
T KOG1490|consen 215 LRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMC---GYSVAAQVKLYHSIKPLFANKV-TILVLNK 290 (620)
T ss_pred eeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhh---CCCHHHHHHHHHHhHHHhcCCc-eEEEeec
Confidence 67899999995332 1111 1222 3445689999977532 2322222211 10111112455 8999999
Q ss_pred ccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccc
Q 010278 231 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 280 (514)
Q Consensus 231 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~ 280 (514)
+|......-.+.-+++.+ .++.. .+++++.+|..+-+|+-.
T Consensus 291 ~D~m~~edL~~~~~~ll~----~~~~~-----~~v~v~~tS~~~eegVm~ 331 (620)
T KOG1490|consen 291 IDAMRPEDLDQKNQELLQ----TIIDD-----GNVKVVQTSCVQEEGVMD 331 (620)
T ss_pred ccccCccccCHHHHHHHH----HHHhc-----cCceEEEecccchhceee
Confidence 998543211122222222 23332 257999999999999865
No 351
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.30 E-value=8.7e-07 Score=80.35 Aligned_cols=57 Identities=25% Similarity=0.310 Sum_probs=40.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
+..+|+++|.+|+|||||+|+|+..... ...+..|.|........ +.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~------------------------------~~~~~~g~T~~~~~~~~---~~ 147 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVC------------------------------KVAPIPGETKVWQYITL---MK 147 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCce------------------------------eeCCCCCeeEeEEEEEc---CC
Confidence 4578999999999999999999643221 12334677776544332 34
Q ss_pred EEEEEeCCCC
Q 010278 162 RFTILDAPGH 171 (514)
Q Consensus 162 ~i~liDtPGh 171 (514)
.+.|+||||.
T Consensus 148 ~~~liDtPGi 157 (157)
T cd01858 148 RIYLIDCPGV 157 (157)
T ss_pred CEEEEECcCC
Confidence 5899999993
No 352
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.28 E-value=1.4e-07 Score=84.10 Aligned_cols=154 Identities=20% Similarity=0.167 Sum_probs=94.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+.+.++|+|+-++||||++.+. -.|..+...-. + -|+..-.....+..++
T Consensus 18 e~aiK~vivGng~VGKssmiqry--CkgifTkdykk------------t---------------Igvdflerqi~v~~Ed 68 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRY--CKGIFTKDYKK------------T---------------IGVDFLERQIKVLIED 68 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHH--hcccccccccc------------c---------------cchhhhhHHHHhhHHH
Confidence 35688999999999999999876 23433322100 0 0110000011122345
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH--HcCCCeEEEEEeeccCCCCCc
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK--TLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~--~~~vp~~IvviNK~D~~~~~~ 238 (514)
.++.+|||+|.+.|=.-+-...+.|.+.+||.+.++-.. |+ -+.+..+-.. ...+| .|++-||+|+ .+.
T Consensus 69 vr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~S---Fe---a~~~w~~kv~~e~~~IP-tV~vqNKIDl--ved 139 (246)
T KOG4252|consen 69 VRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYS---FE---ATLEWYNKVQKETERIP-TVFVQNKIDL--VED 139 (246)
T ss_pred HHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHH---HH---HHHHHHHHHHHHhccCC-eEEeeccchh--hHh
Confidence 667899999999997766666778888999999876421 22 3444333332 24688 7889999999 432
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
+.- -..++..+.+.+. ..++-+|++...|+...+
T Consensus 140 s~~----~~~evE~lak~l~------~RlyRtSvked~NV~~vF 173 (246)
T KOG4252|consen 140 SQM----DKGEVEGLAKKLH------KRLYRTSVKEDFNVMHVF 173 (246)
T ss_pred hhc----chHHHHHHHHHhh------hhhhhhhhhhhhhhHHHH
Confidence 221 1233333344432 467889999988887654
No 353
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.28 E-value=7.6e-06 Score=82.73 Aligned_cols=94 Identities=14% Similarity=0.198 Sum_probs=55.6
Q ss_pred CCeEEEEEeCCCCcch-------HHHHHHhh-----hhcCEEEEEEECCCCcccccccCCcchHHHHHH-HHHcCCCeEE
Q 010278 159 ETTRFTILDAPGHKSY-------VPNMISGA-----SQADIGVLVISARKGEFETGFEKGGQTREHVML-AKTLGVTKLL 225 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f-------~~~~~~g~-----~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~-~~~~~vp~~I 225 (514)
.++.+.||||||...+ ++.+.+.+ ..++..+||+||+.|- .....+.. ....++. -
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~---------~~~~~a~~f~~~~~~~--g 263 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ---------NALSQAKAFHEAVGLT--G 263 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh---------HHHHHHHHHHhhCCCC--E
Confidence 5678999999996543 22222222 2578899999999762 22222222 2234444 4
Q ss_pred EEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 226 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 226 vviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
+++||+|.. .. .-.+.+.+ ... ..|+..++ +|++++++
T Consensus 264 iIlTKlD~t-~~-----~G~~l~~~----~~~------~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 264 IILTKLDGT-AK-----GGVVFAIA----DEL------GIPIKFIG--VGEGIDDL 301 (318)
T ss_pred EEEECCCCC-CC-----ccHHHHHH----HHH------CCCEEEEe--CCCChhhC
Confidence 689999973 21 11222222 222 35888888 79998765
No 354
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=98.26 E-value=6.9e-06 Score=66.31 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=55.1
Q ss_pred cCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC----CeeeeecCCCCeEEEEccCCCcccceeeeEEcc
Q 010278 323 DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 393 (514)
Q Consensus 323 ~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~ 393 (514)
..|+++++||.+|+|+.||.|+....+...+|..|... +.++++|.|||++++ .++ .+++.||+||+
T Consensus 14 ~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v--~gl--~~~~~Gdtl~~ 84 (85)
T cd03689 14 HRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGL--VNP--GNFQIGDTLTE 84 (85)
T ss_pred CCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEE--ECC--CCccccCEeeC
Confidence 46999999999999999999988766666778787654 568999999999995 444 34789999974
No 355
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.26 E-value=1.2e-05 Score=77.44 Aligned_cols=120 Identities=14% Similarity=0.031 Sum_probs=70.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+...|+|+|.+++|||||+|+|+.......- ........+|+-+....... ..
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~------------------------~~~~~~~T~gi~~~~~~~~~-~~ 58 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDV------------------------MDTSQQTTKGIWMWSVPFKL-GK 58 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEe------------------------cCCCCCCccceEEEeccccC-CC
Confidence 456788999999999999999999654211100 00001111344332211111 14
Q ss_pred CeEEEEEeCCCCcch------HHHHHHhhhh--cCEEEEEEECCCCcccccccCCcchHHHHHHHHH-------------
Q 010278 160 TTRFTILDAPGHKSY------VPNMISGASQ--ADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------------- 218 (514)
Q Consensus 160 ~~~i~liDtPGh~~f------~~~~~~g~~~--~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~------------- 218 (514)
+..+.|+||||..+. ....+.++.. +|+.|+.++...- .+....+..+..
T Consensus 59 ~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~~---------~~~~~~l~~~~~~~~~~~~~~~~~~ 129 (224)
T cd01851 59 EHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETIL---------GDDLAALMGLLKTTLEVLGLAGLTE 129 (224)
T ss_pred cceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCccc---------HHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 578999999995432 3334555554 9999999998643 233333333322
Q ss_pred --cCCCeEEEEEeeccC
Q 010278 219 --LGVTKLLLVVNKMDD 233 (514)
Q Consensus 219 --~~vp~~IvviNK~D~ 233 (514)
...|++++++..++.
T Consensus 130 ~~~~~p~ll~vvRD~~~ 146 (224)
T cd01851 130 FEKPKPLLLFVVRDFSL 146 (224)
T ss_pred cccCCCceEEEEecCcC
Confidence 135678899988876
No 356
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.25 E-value=5.8e-06 Score=72.31 Aligned_cols=160 Identities=16% Similarity=0.197 Sum_probs=108.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..-.+.|+++|....|||||+-.-. +...+. +-+...|+..--...++.-.
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV---~~~~de--------------------------~~~q~~GvN~mdkt~~i~~t 67 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYV---QNEYDE--------------------------EYTQTLGVNFMDKTVSIRGT 67 (205)
T ss_pred cceEEEEEeecccccCceeeehhhh---cchhHH--------------------------HHHHHhCccceeeEEEecce
Confidence 3456899999999999999974331 111000 01112344333333444444
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcC---CCeEEEEEeeccCCCC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG---VTKLLLVVNKMDDHTV 236 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~---vp~~IvviNK~D~~~~ 236 (514)
...|.++|..|.++|..+.--+...+-+++++.|-+.... -...++..++++.++ +| |++-+|.|.. .
T Consensus 68 ~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~T------LnSi~~WY~QAr~~NktAiP--ilvGTKyD~f-i 138 (205)
T KOG1673|consen 68 DISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRST------LNSIKEWYRQARGLNKTAIP--ILVGTKYDLF-I 138 (205)
T ss_pred EEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHH------HHHHHHHHHHHhccCCccce--EEeccchHhh-h
Confidence 5678999999999987766555567778889999876532 134567777888776 56 5789999984 4
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+...+.-..+..+-+.+.+.+ +.+.+.+|+-+.-|+.+.+.
T Consensus 139 ~lp~e~Q~~I~~qar~YAk~m------nAsL~F~Sts~sINv~KIFK 179 (205)
T KOG1673|consen 139 DLPPELQETISRQARKYAKVM------NASLFFCSTSHSINVQKIFK 179 (205)
T ss_pred cCCHHHHHHHHHHHHHHHHHh------CCcEEEeeccccccHHHHHH
Confidence 555666667777777777766 35789999999999987543
No 357
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.25 E-value=3.3e-06 Score=88.52 Aligned_cols=158 Identities=17% Similarity=0.142 Sum_probs=95.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
..++.++|+++|.-|+|||+|+=.|+...-.-.- --+..-|++. ..+.-
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~V----------------------------P~rl~~i~IP---advtP 53 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAV----------------------------PRRLPRILIP---ADVTP 53 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccc----------------------------cccCCccccC---CccCc
Confidence 3457799999999999999999888654321000 0111234443 22333
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-----CCCeEEEEEeeccC
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----GVTKLLLVVNKMDD 233 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~-----~vp~~IvviNK~D~ 233 (514)
+....+|+||+-..+-.......++.||++.+|.+.++..+ ++.-+...|=+.+++ ++| +|+|-||.|.
T Consensus 54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T-----~D~ist~WLPlir~~~~~~~~~P-VILvGNK~d~ 127 (625)
T KOG1707|consen 54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDEST-----VDRISTKWLPLIRQLFGDYHETP-VILVGNKSDN 127 (625)
T ss_pred CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHH-----hhhhhhhhhhhhhcccCCCccCC-EEEEeeccCC
Confidence 44558999999766655555667899999999999887533 223344455556665 478 9999999998
Q ss_pred CCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 234 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 234 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
... .....+. .+..++..+.- --..|.+||++-.|+.+++
T Consensus 128 ~~~--~~~s~e~---~~~pim~~f~E----iEtciecSA~~~~n~~e~f 167 (625)
T KOG1707|consen 128 GDN--ENNSDEV---NTLPIMIAFAE----IETCIECSALTLANVSELF 167 (625)
T ss_pred ccc--cccchhH---HHHHHHHHhHH----HHHHHhhhhhhhhhhHhhh
Confidence 322 2111111 11222221110 1135678888888887764
No 358
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.24 E-value=1.7e-05 Score=78.49 Aligned_cols=94 Identities=18% Similarity=0.237 Sum_probs=55.2
Q ss_pred CCeEEEEEeCCCCcchHHHHH-------Hhh-----hhcCEEEEEEECCCCcccccccCCcchHHHHHH-HHHcCCCeEE
Q 010278 159 ETTRFTILDAPGHKSYVPNMI-------SGA-----SQADIGVLVISARKGEFETGFEKGGQTREHVML-AKTLGVTKLL 225 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~-------~g~-----~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~-~~~~~vp~~I 225 (514)
.++.+.||||||...+-...+ +.. ..+|..+||+|+..| ......+.. .+..++. -
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~---------~~~~~~~~~f~~~~~~~--g 221 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG---------QNALEQAKVFNEAVGLT--G 221 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC---------HHHHHHHHHHHhhCCCC--E
Confidence 568899999999765422222 211 138999999999865 233333322 3345655 4
Q ss_pred EEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 226 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 226 vviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
+++||+|.... +-.+.+.. ... ..|+..++ +|++++++
T Consensus 222 ~IlTKlDe~~~------~G~~l~~~----~~~------~~Pi~~~~--~Gq~~~dl 259 (272)
T TIGR00064 222 IILTKLDGTAK------GGIILSIA----YEL------KLPIKFIG--VGEKIDDL 259 (272)
T ss_pred EEEEccCCCCC------ccHHHHHH----HHH------CcCEEEEe--CCCChHhC
Confidence 68999998321 11222211 122 25777777 78887664
No 359
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.23 E-value=1.5e-06 Score=80.02 Aligned_cols=58 Identities=22% Similarity=0.329 Sum_probs=42.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
....+|+++|.+|+|||||+|+|+..... ......|+|.......+ +
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~------------------------------~~~~~pg~T~~~~~~~~---~ 161 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRAC------------------------------NVGATPGVTKSMQEVHL---D 161 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccc------------------------------eecCCCCeEcceEEEEe---C
Confidence 34579999999999999999999543211 12334788887655544 3
Q ss_pred eEEEEEeCCCC
Q 010278 161 TRFTILDAPGH 171 (514)
Q Consensus 161 ~~i~liDtPGh 171 (514)
..+.|+||||.
T Consensus 162 ~~~~l~DtPGi 172 (172)
T cd04178 162 KKVKLLDSPGI 172 (172)
T ss_pred CCEEEEECcCC
Confidence 46899999993
No 360
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.20 E-value=6e-06 Score=74.67 Aligned_cols=80 Identities=24% Similarity=0.278 Sum_probs=53.3
Q ss_pred hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcc
Q 010278 182 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 261 (514)
Q Consensus 182 ~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~ 261 (514)
+..+|++|+|+|+.++.. .+..+...++...+.| +++++||+|+. + ....+.. ..+....
T Consensus 10 ~~~aD~vl~V~D~~~~~~-------~~~~~l~~~~~~~~~p-~iiv~NK~Dl~--~--~~~~~~~----~~~~~~~---- 69 (156)
T cd01859 10 IKESDVVLEVLDARDPEL-------TRSRKLERYVLELGKK-LLIVLNKADLV--P--KEVLEKW----KSIKESE---- 69 (156)
T ss_pred HhhCCEEEEEeeCCCCcc-------cCCHHHHHHHHhCCCc-EEEEEEhHHhC--C--HHHHHHH----HHHHHhC----
Confidence 456999999999987643 3455555556667888 89999999983 2 1112111 1122221
Q ss_pred cCCeeEEeeccccccccccccc
Q 010278 262 KKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 262 ~~~~~iipiSa~~G~gi~~l~~ 283 (514)
..+++++||++|.|+.++.+
T Consensus 70 --~~~~~~iSa~~~~gi~~L~~ 89 (156)
T cd01859 70 --GIPVVYVSAKERLGTKILRR 89 (156)
T ss_pred --CCcEEEEEccccccHHHHHH
Confidence 24789999999999988543
No 361
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.18 E-value=2.8e-05 Score=77.86 Aligned_cols=144 Identities=17% Similarity=0.272 Sum_probs=89.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCch-hhhhcccEEEeeeEEEEeC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNE-EERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~-~e~~~giT~~~~~~~~~~~ 159 (514)
--..+|.++|..|.||||++|.|+.+.- .+.. ..+... .....++.+......+.-+
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l-~~~~---------------------~~~~~~~~~~~~~~~i~~~~~~l~e~ 78 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSL-VDET---------------------EIDDIRAEGTSPTLEIKITKAELEED 78 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhc-cCCC---------------------CccCcccccCCcceEEEeeeeeeecC
Confidence 3468999999999999999999976521 1100 000011 1123445555555555555
Q ss_pred C--eEEEEEeCCCCcch-------------HHHHHHh--------h-------hhcCEEEEEEECCC-CcccccccCCcc
Q 010278 160 T--TRFTILDAPGHKSY-------------VPNMISG--------A-------SQADIGVLVISARK-GEFETGFEKGGQ 208 (514)
Q Consensus 160 ~--~~i~liDtPGh~~f-------------~~~~~~g--------~-------~~~D~ailVVda~~-g~~e~~~~~~~q 208 (514)
+ ..+++|||||.-++ +..+... - ...+++|+.+-.+. | +.+.
T Consensus 79 ~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-------l~~~ 151 (373)
T COG5019 79 GFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-------LKPL 151 (373)
T ss_pred CeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-------CCHH
Confidence 5 46899999996544 2211111 1 14789999998653 4 2245
Q ss_pred hHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccC
Q 010278 209 TREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 259 (514)
Q Consensus 209 t~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~ 259 (514)
..+.+..+.. .+. +|=||-|.|.. ..+.+...++.+...+....+
T Consensus 152 DIe~Mk~ls~-~vN-lIPVI~KaD~l----T~~El~~~K~~I~~~i~~~nI 196 (373)
T COG5019 152 DIEAMKRLSK-RVN-LIPVIAKADTL----TDDELAEFKERIREDLEQYNI 196 (373)
T ss_pred HHHHHHHHhc-ccC-eeeeeeccccC----CHHHHHHHHHHHHHHHHHhCC
Confidence 5554443332 345 88899999983 456788888888888887754
No 362
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.15 E-value=1.5e-05 Score=83.11 Aligned_cols=64 Identities=22% Similarity=0.348 Sum_probs=40.1
Q ss_pred CCeEEEEEeCCCCcch----HHHHHHh--hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-HcCCCeEEEEEeec
Q 010278 159 ETTRFTILDAPGHKSY----VPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 231 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f----~~~~~~g--~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~-~~~vp~~IvviNK~ 231 (514)
.++.+.||||||.... +..+..- ...+|-++||+||..|- .....+.... ..++. -+++||+
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq---------~a~~~a~~F~~~~~~~--g~IlTKl 249 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ---------AAEAQAKAFKDSVDVG--SVIITKL 249 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccCh---------hHHHHHHHHHhccCCc--EEEEECc
Confidence 3678999999996543 2222221 23589999999998761 2222333222 23444 4689999
Q ss_pred cC
Q 010278 232 DD 233 (514)
Q Consensus 232 D~ 233 (514)
|.
T Consensus 250 D~ 251 (429)
T TIGR01425 250 DG 251 (429)
T ss_pred cC
Confidence 97
No 363
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.14 E-value=1.2e-05 Score=71.44 Aligned_cols=80 Identities=19% Similarity=0.226 Sum_probs=55.7
Q ss_pred HHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhh
Q 010278 176 PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPF 253 (514)
Q Consensus 176 ~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~ 253 (514)
+...+.+..+|++++|+|+..+.. .+..+....+... +.| +++++||+|+ .+ +.... .+...
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~-------~~~~~l~~~l~~~~~~k~-~iivlNK~DL--~~--~~~~~----~~~~~ 66 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLL-------FRPPDLERYVKEVDPRKK-NILLLNKADL--LT--EEQRK----AWAEY 66 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcc-------cCCHHHHHHHHhccCCCc-EEEEEechhc--CC--HHHHH----HHHHH
Confidence 455677889999999999988743 3555666666665 777 8899999998 32 22222 23334
Q ss_pred hhhccCcccCCeeEEeeccccccc
Q 010278 254 LKASGYNVKKDVQFLPISGLMGLN 277 (514)
Q Consensus 254 l~~~g~~~~~~~~iipiSa~~G~g 277 (514)
++..+ .+++++||++|.+
T Consensus 67 ~~~~~------~~ii~iSa~~~~~ 84 (141)
T cd01857 67 FKKEG------IVVVFFSALKENA 84 (141)
T ss_pred HHhcC------CeEEEEEecCCCc
Confidence 44443 3689999999986
No 364
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.12 E-value=3.4e-06 Score=76.30 Aligned_cols=58 Identities=24% Similarity=0.351 Sum_probs=41.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
....+++++|++|+|||||+|+|+.....- ..+.+|.|.......+ +
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~---~ 144 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLK------------------------------VGNVPGTTTSQQEVKL---D 144 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcccccc------------------------------ccCCCCcccceEEEEe---c
Confidence 356889999999999999999996533210 1223677777655444 3
Q ss_pred eEEEEEeCCCC
Q 010278 161 TRFTILDAPGH 171 (514)
Q Consensus 161 ~~i~liDtPGh 171 (514)
..+.|+||||.
T Consensus 145 ~~~~liDtPG~ 155 (155)
T cd01849 145 NKIKLLDTPGI 155 (155)
T ss_pred CCEEEEECCCC
Confidence 56999999994
No 365
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.10 E-value=1e-05 Score=74.47 Aligned_cols=92 Identities=16% Similarity=0.188 Sum_probs=58.9
Q ss_pred CCCC-cchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHH
Q 010278 168 APGH-KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEI 246 (514)
Q Consensus 168 tPGh-~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i 246 (514)
-||| .+.+.++...+..+|++++|+|+..+.. ....+.+..+ .+.| +++++||+|+. + +.....
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~-------~~~~~i~~~~--~~k~-~ilVlNK~Dl~--~--~~~~~~- 66 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLS-------SRNPLLEKIL--GNKP-RIIVLNKADLA--D--PKKTKK- 66 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccC-------cCChhhHhHh--cCCC-EEEEEehhhcC--C--hHHHHH-
Confidence 3787 4557777778899999999999987632 2223332222 3566 78999999983 2 111111
Q ss_pred HhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 247 ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 247 ~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
...+++..+ .+++++||++|.|+.++.+
T Consensus 67 ---~~~~~~~~~------~~vi~iSa~~~~gi~~L~~ 94 (171)
T cd01856 67 ---WLKYFESKG------EKVLFVNAKSGKGVKKLLK 94 (171)
T ss_pred ---HHHHHHhcC------CeEEEEECCCcccHHHHHH
Confidence 112222221 3689999999999988644
No 366
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.09 E-value=1.2e-05 Score=72.79 Aligned_cols=84 Identities=14% Similarity=0.025 Sum_probs=53.8
Q ss_pred HHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhh
Q 010278 179 ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKA 256 (514)
Q Consensus 179 ~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~ 256 (514)
.+++..+|++++|+|+..+.. .+.......+... +.| +|+|+||+|+. + ++........+ .+
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~-------~~~~~i~~~l~~~~~~~p-~ilVlNKiDl~--~--~~~~~~~~~~~----~~ 66 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMG-------TRCKHVEEYLKKEKPHKH-LIFVLNKCDLV--P--TWVTARWVKIL----SK 66 (157)
T ss_pred hHhhhhCCEEEEEEECCCCcc-------ccCHHHHHHHHhccCCCC-EEEEEEchhcC--C--HHHHHHHHHHH----hc
Confidence 456789999999999988632 3455555555443 477 88999999993 2 22222222222 21
Q ss_pred ccCcccCCeeEEeeccccccccccccc
Q 010278 257 SGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 257 ~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. + ...++++||++|.|+.++.+
T Consensus 67 ~-~----~~~~~~iSa~~~~~~~~L~~ 88 (157)
T cd01858 67 E-Y----PTIAFHASINNPFGKGSLIQ 88 (157)
T ss_pred C-C----cEEEEEeeccccccHHHHHH
Confidence 1 1 12368999999999987543
No 367
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.09 E-value=0.00012 Score=64.01 Aligned_cols=111 Identities=25% Similarity=0.213 Sum_probs=72.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEe-eeEEEEeC-
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEV-GRAHFETE- 159 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~-~~~~~~~~- 159 (514)
+.-.|+++|.-++|||.++.+|+|-........ --|+.- -...++++
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~-------------------------------~pTiEDiY~~svet~r 56 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTEL-------------------------------HPTIEDIYVASVETDR 56 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCcc-------------------------------ccchhhheeEeeecCC
Confidence 456899999999999999999987554322110 111111 11223332
Q ss_pred --CeEEEEEeCCCCcchHHH-HHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--------CCCeEEEEE
Q 010278 160 --TTRFTILDAPGHKSYVPN-MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--------GVTKLLLVV 228 (514)
Q Consensus 160 --~~~i~liDtPGh~~f~~~-~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~--------~vp~~Ivvi 228 (514)
...+.|.||.|...+-.. --...+.+|+-+||.|.++.. ....+.+++.. .+| ++|..
T Consensus 57 garE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~e----------Sf~rv~llKk~Idk~KdKKEvp-iVVLa 125 (198)
T KOG3883|consen 57 GAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPE----------SFQRVELLKKEIDKHKDKKEVP-IVVLA 125 (198)
T ss_pred ChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHH----------HHHHHHHHHHHHhhcccccccc-EEEEe
Confidence 246899999999888333 333467899999999988752 23333333321 378 89999
Q ss_pred eeccCC
Q 010278 229 NKMDDH 234 (514)
Q Consensus 229 NK~D~~ 234 (514)
||.|+.
T Consensus 126 N~rdr~ 131 (198)
T KOG3883|consen 126 NKRDRA 131 (198)
T ss_pred chhhcc
Confidence 999993
No 368
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.03 E-value=0.00011 Score=69.23 Aligned_cols=142 Identities=22% Similarity=0.311 Sum_probs=83.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeee--EEEEeCC
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR--AHFETET 160 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~--~~~~~~~ 160 (514)
..||.++|..+.|||||+|.|.... ..+ ++. +....++.+ .|+.+.. ..++-++
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~-v~~-------------~s~---------~~~~~~p~p-kT~eik~~thvieE~g 101 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSH-VSD-------------SSS---------SDNSAEPIP-KTTEIKSITHVIEEKG 101 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHH-Hhh-------------ccC---------CCcccCccc-ceEEEEeeeeeeeecc
Confidence 5899999999999999999984321 100 000 000111111 2333322 2233343
Q ss_pred --eEEEEEeCCCC---------------------cchHHHHHHhhh-------hcCEEEEEEECCCCcccccccCCcchH
Q 010278 161 --TRFTILDAPGH---------------------KSYVPNMISGAS-------QADIGVLVISARKGEFETGFEKGGQTR 210 (514)
Q Consensus 161 --~~i~liDtPGh---------------------~~f~~~~~~g~~-------~~D~ailVVda~~g~~e~~~~~~~qt~ 210 (514)
-++++|||||. +.|++.-+...+ ..+++++.|.++... +.+-+.
T Consensus 102 VklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs------LrplDi 175 (336)
T KOG1547|consen 102 VKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS------LRPLDI 175 (336)
T ss_pred eEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc------cCcccH
Confidence 46899999994 444544444332 467889999887543 446677
Q ss_pred HHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCc
Q 010278 211 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 260 (514)
Q Consensus 211 e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~ 260 (514)
|.+..+.. +-.+|-||-|.|.... +...+.++.++.-|...+++
T Consensus 176 eflkrLt~--vvNvvPVIakaDtlTl----eEr~~FkqrI~~el~~~~i~ 219 (336)
T KOG1547|consen 176 EFLKRLTE--VVNVVPVIAKADTLTL----EERSAFKQRIRKELEKHGID 219 (336)
T ss_pred HHHHHHhh--hheeeeeEeecccccH----HHHHHHHHHHHHHHHhcCcc
Confidence 77655443 2237778999998543 33445566666667766654
No 369
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.02 E-value=1.6e-05 Score=73.83 Aligned_cols=155 Identities=21% Similarity=0.241 Sum_probs=89.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEE-eeeEEEEe--
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVE-VGRAHFET-- 158 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~-~~~~~~~~-- 158 (514)
..+.+++||...+|||.|+-.. .++..... ... |+- --...+..
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~--t~~~fp~~-----------------------------yvP--TVFdnys~~v~V~d 49 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISY--TTNAFPEE-----------------------------YVP--TVFDNYSANVTVDD 49 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEe--ccCcCccc-----------------------------ccC--eEEccceEEEEecC
Confidence 4578999999999999997433 44432211 111 111 11112222
Q ss_pred -CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--cCCCeEEEEEeeccCCC
Q 010278 159 -ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 159 -~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~--~~vp~~IvviNK~D~~~ 235 (514)
....+.|+||+|.++|-+.+--....+|+.|++.+...... |+ .-....+--++. -++| +|+|-+|.|+.
T Consensus 50 g~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S---~~--nv~~kW~pEi~~~cp~vp-iiLVGtk~DLr- 122 (198)
T KOG0393|consen 50 GKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPES---FE--NVKSKWIPEIKHHCPNVP-IILVGTKADLR- 122 (198)
T ss_pred CCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhh---HH--HHHhhhhHHHHhhCCCCC-EEEEeehHHhh-
Confidence 23457899999999996644335578999998888665421 11 111111222222 2688 99999999993
Q ss_pred CCchHHHHHHHH---------hhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDEIE---------SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~i~---------~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+ +....+.+. ++-..+.+++| -+.++.+||++..|+.+.++
T Consensus 123 -~-d~~~~~~l~~~~~~~Vt~~~g~~lA~~ig-----a~~y~EcSa~tq~~v~~vF~ 172 (198)
T KOG0393|consen 123 -D-DPSTLEKLQRQGLEPVTYEQGLELAKEIG-----AVKYLECSALTQKGVKEVFD 172 (198)
T ss_pred -h-CHHHHHHHHhccCCcccHHHHHHHHHHhC-----cceeeeehhhhhCCcHHHHH
Confidence 1 111111211 12222334444 25799999999999887643
No 370
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.00 E-value=1.8e-05 Score=74.05 Aligned_cols=98 Identities=13% Similarity=0.007 Sum_probs=56.0
Q ss_pred CcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhh
Q 010278 171 HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKM 250 (514)
Q Consensus 171 h~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l 250 (514)
+..|.......+..+|++|+|+|+.+... ...+.+ .....+.| +++|+||+|+....-.....+.....
T Consensus 21 ~~~~~~~l~~~~~~ad~il~VvD~~~~~~--------~~~~~l-~~~~~~~~-~ilV~NK~Dl~~~~~~~~~~~~~~~~- 89 (190)
T cd01855 21 EDFILNLLSSISPKKALVVHVVDIFDFPG--------SLIPRL-RLFGGNNP-VILVGNKIDLLPKDKNLVRIKNWLRA- 89 (190)
T ss_pred HHHHHHHHHhcccCCcEEEEEEECccCCC--------ccchhH-HHhcCCCc-EEEEEEchhcCCCCCCHHHHHHHHHH-
Confidence 33356666666789999999999987531 122222 22234667 88999999984221111111111100
Q ss_pred hhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 251 TPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 251 ~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
...+..++. ..+++++||++|.|+.++++
T Consensus 90 -~~~~~~~~~---~~~i~~vSA~~~~gi~eL~~ 118 (190)
T cd01855 90 -KAAAGLGLK---PKDVILISAKKGWGVEELIN 118 (190)
T ss_pred -HHHhhcCCC---cccEEEEECCCCCCHHHHHH
Confidence 011222221 13689999999999998543
No 371
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.99 E-value=1.7e-05 Score=74.56 Aligned_cols=66 Identities=20% Similarity=0.380 Sum_probs=42.6
Q ss_pred CCeEEEEEeCCCCcchHHHHHHh------hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISG------ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 232 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g------~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D 232 (514)
+++.+.||||||...+-...+.. ...++-++||+||+.+. .............++.. ++++|+|
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--------~~~~~~~~~~~~~~~~~--lIlTKlD 151 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--------EDLEQALAFYEAFGIDG--LILTKLD 151 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--------HHHHHHHHHHHHSSTCE--EEEESTT
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--------HHHHHHHHHhhcccCce--EEEEeec
Confidence 45679999999976553222111 23688999999999762 13334444455567874 3699999
Q ss_pred CC
Q 010278 233 DH 234 (514)
Q Consensus 233 ~~ 234 (514)
..
T Consensus 152 et 153 (196)
T PF00448_consen 152 ET 153 (196)
T ss_dssp SS
T ss_pred CC
Confidence 83
No 372
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.95 E-value=2.5e-05 Score=77.71 Aligned_cols=91 Identities=19% Similarity=0.211 Sum_probs=58.0
Q ss_pred CCCcc-hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHH
Q 010278 169 PGHKS-YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIE 247 (514)
Q Consensus 169 PGh~~-f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~ 247 (514)
|||-. -++++...+..+|++|+|+||..+.. ........++ .+.| +|+|+||+|+ .+ +...+...
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~-------~~~~~i~~~l--~~kp-~IiVlNK~DL--~~--~~~~~~~~ 70 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLS-------SRNPMIDEIR--GNKP-RLIVLNKADL--AD--PAVTKQWL 70 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------CCChhHHHHH--CCCC-EEEEEEcccc--CC--HHHHHHHH
Confidence 88754 46666677889999999999987632 2222222322 2566 8899999998 32 11122211
Q ss_pred hhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 248 SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 248 ~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.+++..+ .+++++||.+|.|+..+.+
T Consensus 71 ----~~~~~~~------~~vi~iSa~~~~gi~~L~~ 96 (276)
T TIGR03596 71 ----KYFEEKG------IKALAINAKKGKGVKKIIK 96 (276)
T ss_pred ----HHHHHcC------CeEEEEECCCcccHHHHHH
Confidence 2222222 4689999999999987543
No 373
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.95 E-value=1e-05 Score=75.73 Aligned_cols=64 Identities=22% Similarity=0.245 Sum_probs=41.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeE
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 162 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~ 162 (514)
..+++++|.+|+|||||+|+|+.....-.. ..+ .......+|.|.+.....+. ..
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~-----------~~~-----------~~~~~~~~gtT~~~~~~~~~---~~ 181 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKK-----------LKD-----------LLTTSPIPGTTLDLIKIPLG---NG 181 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccc-----------ccc-----------ccccCCCCCeeeeeEEEecC---CC
Confidence 468999999999999999999754321000 000 00122336888887655553 25
Q ss_pred EEEEeCCCC
Q 010278 163 FTILDAPGH 171 (514)
Q Consensus 163 i~liDtPGh 171 (514)
+.|+||||.
T Consensus 182 ~~~~DtPG~ 190 (190)
T cd01855 182 KKLYDTPGI 190 (190)
T ss_pred CEEEeCcCC
Confidence 899999994
No 374
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.95 E-value=1.4e-05 Score=75.94 Aligned_cols=85 Identities=19% Similarity=0.173 Sum_probs=58.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeE
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 162 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~ 162 (514)
.-+|+++|-|.+|||||+..|...-.. ....-+.|.........+++-+
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~-------------------------------vasyefttl~~vpG~~~y~gaK 107 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSE-------------------------------VAAYEFTTLTTVPGVIRYKGAK 107 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCc-------------------------------cccccceeEEEecceEeccccc
Confidence 358999999999999999887322111 1111223333333445577889
Q ss_pred EEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCc
Q 010278 163 FTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGE 198 (514)
Q Consensus 163 i~liDtPGh~~-------f~~~~~~g~~~~D~ailVVda~~g~ 198 (514)
+.+.|.||.-+ .-++.+.-++.|..+++|+|+..+.
T Consensus 108 iqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp~ 150 (358)
T KOG1487|consen 108 IQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPL 150 (358)
T ss_pred eeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCcc
Confidence 99999999532 3455666678999999999998764
No 375
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=97.93 E-value=7.4e-05 Score=61.41 Aligned_cols=66 Identities=23% Similarity=0.426 Sum_probs=50.7
Q ss_pred cCCeEEEEEEeeeeeecCCEEEEec---------CCcEEEEEEEEEC----CeeeeecCCCCeEEEEccCCCcccceeee
Q 010278 323 DMGTVVMGKVESGSVREGDSLLVMP---------NKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGF 389 (514)
Q Consensus 323 ~~G~v~~g~v~sG~l~~gd~v~~~p---------~~~~~~V~si~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G~ 389 (514)
..|.++++||++|+|+.||.|.+.. .....+|..|... ..++++|.|||+|++ .|++ +++.|+
T Consensus 14 ~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i--~g~~--~~~~g~ 89 (93)
T cd03700 14 KGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLI--VGLD--QLKSGT 89 (93)
T ss_pred CCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEE--ECCc--cCceEe
Confidence 5688999999999999999998765 2234677787654 468899999999996 4443 367777
Q ss_pred EEc
Q 010278 390 VLS 392 (514)
Q Consensus 390 vl~ 392 (514)
+.+
T Consensus 90 ~~~ 92 (93)
T cd03700 90 TAT 92 (93)
T ss_pred Eec
Confidence 753
No 376
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.92 E-value=6.3e-05 Score=77.01 Aligned_cols=65 Identities=22% Similarity=0.310 Sum_probs=43.4
Q ss_pred CeEEEEEeCCCCcch----HHHHHHhh--hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 160 TTRFTILDAPGHKSY----VPNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 160 ~~~i~liDtPGh~~f----~~~~~~g~--~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
++.+.||||||.... +..+..-+ ..+|-++||+||+.+. ....+.+......++.. ++++|+|.
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--------~d~~~i~~~F~~~~idg--lI~TKLDE 389 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--------KDMIEIITNFKDIHIDG--IVFTKFDE 389 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--------HHHHHHHHHhcCCCCCE--EEEEcccC
Confidence 468999999996443 33333322 3578899999997541 13355555666677775 47999998
Q ss_pred C
Q 010278 234 H 234 (514)
Q Consensus 234 ~ 234 (514)
.
T Consensus 390 T 390 (436)
T PRK11889 390 T 390 (436)
T ss_pred C
Confidence 3
No 377
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.90 E-value=0.0001 Score=67.73 Aligned_cols=65 Identities=22% Similarity=0.360 Sum_probs=40.6
Q ss_pred CCeEEEEEeCCCCcch----HHHHHHhh--hhcCEEEEEEECCCCcccccccCCcchHHH-HHHHHHcCCCeEEEEEeec
Q 010278 159 ETTRFTILDAPGHKSY----VPNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREH-VMLAKTLGVTKLLLVVNKM 231 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f----~~~~~~g~--~~~D~ailVVda~~g~~e~~~~~~~qt~e~-l~~~~~~~vp~~IvviNK~ 231 (514)
.++.+.|+||||...+ +..+.... ..+|.+++|+|+..+. ...+. ..+....++. -+++||+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---------~~~~~~~~~~~~~~~~--~viltk~ 149 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---------DAVNQAKAFNEALGIT--GVILTKL 149 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---------HHHHHHHHHHhhCCCC--EEEEECC
Confidence 4567899999998643 32222111 2489999999997541 23333 3333455654 4678999
Q ss_pred cCC
Q 010278 232 DDH 234 (514)
Q Consensus 232 D~~ 234 (514)
|..
T Consensus 150 D~~ 152 (173)
T cd03115 150 DGD 152 (173)
T ss_pred cCC
Confidence 983
No 378
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.89 E-value=6.5e-06 Score=74.34 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
..++++|+.|+|||||+|.|+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 78999999999999999999654
No 379
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.88 E-value=2.1e-05 Score=78.67 Aligned_cols=58 Identities=22% Similarity=0.251 Sum_probs=41.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+..+|+++|.+|+|||||+|+|+..... ......|+|........ +
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~------------------------------~~~~~~g~T~~~~~~~~---~ 165 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIA------------------------------KTGNRPGVTKAQQWIKL---G 165 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCcc------------------------------ccCCCCCeEEEEEEEEe---C
Confidence 35678999999999999999999542211 12223688887654332 3
Q ss_pred eEEEEEeCCCC
Q 010278 161 TRFTILDAPGH 171 (514)
Q Consensus 161 ~~i~liDtPGh 171 (514)
..+.|+||||.
T Consensus 166 ~~~~l~DtPGi 176 (287)
T PRK09563 166 KGLELLDTPGI 176 (287)
T ss_pred CcEEEEECCCc
Confidence 56899999995
No 380
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.87 E-value=7.8e-05 Score=61.28 Aligned_cols=74 Identities=27% Similarity=0.379 Sum_probs=57.0
Q ss_pred eEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC-CeeeeecCCCCeEEEEccCCCcccceeeeE
Q 010278 314 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGFV 390 (514)
Q Consensus 314 ~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~-~~~v~~a~aG~~v~~~l~~~~~~~i~~G~v 390 (514)
+..|.++. ++.|.+++..|.+|+|++||.++.+ ....+||+|... ..++++|.||+.|.+ .|++.. -..|+.
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G--~~~gkVr~l~d~~g~~v~~a~Ps~~V~I--~G~~~~-P~aGd~ 76 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAG--TTYGKVRAMFDENGKRVKEAGPSTPVEI--LGLKGV-PQAGDK 76 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEc--ccccEEEEEECCCCCCCCEECCCCcEEE--cCCCCC-CCCCCE
Confidence 34566665 6889999999999999999999995 446699999987 578999999999986 343320 135655
Q ss_pred Ec
Q 010278 391 LS 392 (514)
Q Consensus 391 l~ 392 (514)
+.
T Consensus 77 ~~ 78 (95)
T cd03702 77 FL 78 (95)
T ss_pred EE
Confidence 54
No 381
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.87 E-value=4.5e-05 Score=68.94 Aligned_cols=77 Identities=27% Similarity=0.243 Sum_probs=48.8
Q ss_pred CEEEEEEECCCCcccccccCCcchHHHH-HHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCC
Q 010278 186 DIGVLVISARKGEFETGFEKGGQTREHV-MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKD 264 (514)
Q Consensus 186 D~ailVVda~~g~~e~~~~~~~qt~e~l-~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~ 264 (514)
|++|+|+|+..+.. ....... ..+...+.| +|+++||+|+ .+ ++...+.... +.... .
T Consensus 1 Dvvl~VvD~~~p~~-------~~~~~i~~~~~~~~~~p-~IiVlNK~Dl--~~--~~~~~~~~~~----~~~~~-----~ 59 (155)
T cd01849 1 DVILEVLDARDPLG-------TRSPDIERVLIKEKGKK-LILVLNKADL--VP--KEVLRKWLAY----LRHSY-----P 59 (155)
T ss_pred CEEEEEEeccCCcc-------ccCHHHHHHHHhcCCCC-EEEEEechhc--CC--HHHHHHHHHH----HHhhC-----C
Confidence 78999999987632 2333333 355667888 8999999999 32 2222111111 22221 2
Q ss_pred eeEEeeccccccccccccc
Q 010278 265 VQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 265 ~~iipiSa~~G~gi~~l~~ 283 (514)
.+++++||++|.|+.++.+
T Consensus 60 ~~ii~vSa~~~~gi~~L~~ 78 (155)
T cd01849 60 TIPFKISATNGQGIEKKES 78 (155)
T ss_pred ceEEEEeccCCcChhhHHH
Confidence 4689999999999988644
No 382
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.87 E-value=1.5e-05 Score=70.83 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 010278 85 NVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
.++++|.+|+|||||+|+|+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~ 105 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVG 105 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999999953
No 383
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.86 E-value=2e-05 Score=76.83 Aligned_cols=84 Identities=21% Similarity=0.222 Sum_probs=55.4
Q ss_pred hhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCc
Q 010278 181 GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 260 (514)
Q Consensus 181 g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~ 260 (514)
.++.+|.+++|+|+....+ .+ ....+.+..+...++| +++|+||+|+. +-.+ ...+....+++.|
T Consensus 33 ~~~n~D~viiV~d~~~p~~--s~---~~l~r~l~~~~~~~i~-~vIV~NK~DL~--~~~~-----~~~~~~~~~~~~g-- 97 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPEL--SL---NQLDRFLVVAEAQNIE-PIIVLNKIDLL--DDED-----MEKEQLDIYRNIG-- 97 (245)
T ss_pred ccccCCEEEEEEECCCCCC--CH---HHHHHHHHHHHHCCCC-EEEEEECcccC--CCHH-----HHHHHHHHHHHCC--
Confidence 4688999999999986532 01 1344555566667888 88999999993 2111 1111112333333
Q ss_pred ccCCeeEEeeccccccccccccc
Q 010278 261 VKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 261 ~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.+++.+||++|.|+.++++
T Consensus 98 ----~~v~~~SAktg~gi~eLf~ 116 (245)
T TIGR00157 98 ----YQVLMTSSKNQDGLKELIE 116 (245)
T ss_pred ----CeEEEEecCCchhHHHHHh
Confidence 4799999999999988643
No 384
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.86 E-value=1.5e-05 Score=80.84 Aligned_cols=58 Identities=26% Similarity=0.324 Sum_probs=43.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
++..++.++|-||+|||||+|+|+...... ..+..|+|.........
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~------------------------------~s~~PG~Tk~~q~i~~~--- 176 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAK------------------------------TSNRPGTTKGIQWIKLD--- 176 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhccccee------------------------------eCCCCceecceEEEEcC---
Confidence 456889999999999999999996544321 23347888877665553
Q ss_pred eEEEEEeCCCC
Q 010278 161 TRFTILDAPGH 171 (514)
Q Consensus 161 ~~i~liDtPGh 171 (514)
..+.|+||||.
T Consensus 177 ~~i~LlDtPGi 187 (322)
T COG1161 177 DGIYLLDTPGI 187 (322)
T ss_pred CCeEEecCCCc
Confidence 34999999993
No 385
>PRK12288 GTPase RsgA; Reviewed
Probab=97.86 E-value=1.3e-05 Score=81.98 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 010278 85 NVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
.++++|.+|+|||||+|+|+..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPE 228 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccc
Confidence 5899999999999999999654
No 386
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.84 E-value=9.9e-05 Score=75.82 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=41.0
Q ss_pred eCCeEEEEEeCCCCc---chHHHHHHhh---hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---------CCC
Q 010278 158 TETTRFTILDAPGHK---SYVPNMISGA---SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---------GVT 222 (514)
Q Consensus 158 ~~~~~i~liDtPGh~---~f~~~~~~g~---~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---------~vp 222 (514)
+.++.+.||||||.. .++...+..+ ..++-.+||++|+.+. ....+.+...... ++.
T Consensus 213 l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~--------~~l~evi~~f~~~~~~p~~~~~~~~ 284 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG--------DTLNEVVQAYRSAAGQPKAALPDLA 284 (374)
T ss_pred hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccCh--------HHHHHHHHHHHHhhcccccccCCCC
Confidence 356789999999966 3344444444 3455669999999763 1223333333333 233
Q ss_pred eEEEEEeeccCC
Q 010278 223 KLLLVVNKMDDH 234 (514)
Q Consensus 223 ~~IvviNK~D~~ 234 (514)
. +++||+|..
T Consensus 285 ~--~I~TKlDEt 294 (374)
T PRK14722 285 G--CILTKLDEA 294 (374)
T ss_pred E--EEEeccccC
Confidence 2 568999983
No 387
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.84 E-value=2.2e-05 Score=78.09 Aligned_cols=58 Identities=21% Similarity=0.258 Sum_probs=40.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+..+++++|.+|+|||||+|+|+..... ......|.|.......+ +
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~------------------------------~~~~~~g~T~~~~~~~~---~ 162 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVA------------------------------KVGNRPGVTKGQQWIKL---S 162 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcc------------------------------ccCCCCCeecceEEEEe---C
Confidence 34688999999999999999999532111 11223677776654433 2
Q ss_pred eEEEEEeCCCC
Q 010278 161 TRFTILDAPGH 171 (514)
Q Consensus 161 ~~i~liDtPGh 171 (514)
..+.|+||||.
T Consensus 163 ~~~~l~DtPG~ 173 (276)
T TIGR03596 163 DGLELLDTPGI 173 (276)
T ss_pred CCEEEEECCCc
Confidence 46899999996
No 388
>PRK12289 GTPase RsgA; Reviewed
Probab=97.83 E-value=4.4e-05 Score=78.19 Aligned_cols=82 Identities=23% Similarity=0.267 Sum_probs=55.9
Q ss_pred hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcc
Q 010278 182 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 261 (514)
Q Consensus 182 ~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~ 261 (514)
++.+|.+++|+|+.+..+. ..+..+.+..+...++| +|+|+||+|+ .+ ....+ .....+..+|
T Consensus 87 ~aNvD~vLlV~d~~~p~~~-----~~~LdR~L~~a~~~~ip-~ILVlNK~DL--v~--~~~~~----~~~~~~~~~g--- 149 (352)
T PRK12289 87 VANADQILLVFALAEPPLD-----PWQLSRFLVKAESTGLE-IVLCLNKADL--VS--PTEQQ----QWQDRLQQWG--- 149 (352)
T ss_pred hhcCCEEEEEEECCCCCCC-----HHHHHHHHHHHHHCCCC-EEEEEEchhc--CC--hHHHH----HHHHHHHhcC---
Confidence 6789999999999865431 01335556666667888 8899999999 32 12222 2223344444
Q ss_pred cCCeeEEeeccccccccccccc
Q 010278 262 KKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 262 ~~~~~iipiSa~~G~gi~~l~~ 283 (514)
++++++||++|.|+.++.+
T Consensus 150 ---~~v~~iSA~tg~GI~eL~~ 168 (352)
T PRK12289 150 ---YQPLFISVETGIGLEALLE 168 (352)
T ss_pred ---CeEEEEEcCCCCCHHHHhh
Confidence 3689999999999988643
No 389
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.83 E-value=2.6e-05 Score=71.69 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=39.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
..++++++|.+++|||||+++|+..... ......|.|.......+. .
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~------------------------------~~~~~~~~T~~~~~~~~~---~ 160 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA------------------------------KVGNKPGVTKGIQWIKIS---P 160 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce------------------------------eecCCCCEEeeeEEEEec---C
Confidence 4478999999999999999999542210 011224667666555443 5
Q ss_pred EEEEEeCCCC
Q 010278 162 RFTILDAPGH 171 (514)
Q Consensus 162 ~i~liDtPGh 171 (514)
.+.++||||.
T Consensus 161 ~~~~iDtpG~ 170 (171)
T cd01856 161 GIYLLDTPGI 170 (171)
T ss_pred CEEEEECCCC
Confidence 6899999995
No 390
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=7.2e-05 Score=67.95 Aligned_cols=149 Identities=20% Similarity=0.263 Sum_probs=94.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeE--EEEe
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA--HFET 158 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~--~~~~ 158 (514)
.....++++|..+.||||++.+.+ +|.... .-..|+.+... .|.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~l--tgeFe~-------------------------------~y~at~Gv~~~pl~f~t 54 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHL--TGEFEK-------------------------------TYPATLGVEVHPLLFDT 54 (216)
T ss_pred cceEEEEEecCCcccccchhhhhh--ccccee-------------------------------cccCcceeEEeeeeeec
Confidence 457889999999999999998773 333211 11122222221 1222
Q ss_pred --CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-CCCeEEEEEeeccCCC
Q 010278 159 --ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMDDHT 235 (514)
Q Consensus 159 --~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~-~vp~~IvviNK~D~~~ 235 (514)
...+|..+||.|.+.|....--..-+.-+||++.|...-.+ ...-.+.|-.+++.- ++| +|++-||.|...
T Consensus 55 n~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t-----~~n~~rwhrd~~rv~~NiP-iv~cGNKvDi~~ 128 (216)
T KOG0096|consen 55 NRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFT-----YKNVPRWHRDLVRVRENIP-IVLCGNKVDIKA 128 (216)
T ss_pred ccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhh-----hhcchHHHHHHHHHhcCCC-eeeeccceeccc
Confidence 23789999999999997666555556778999999776544 223344555555544 478 999999999721
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
. +++.+ .+.+....++..+.+||++..|.+..+
T Consensus 129 r--------~~k~k------~v~~~rkknl~y~~iSaksn~NfekPF 161 (216)
T KOG0096|consen 129 R--------KVKAK------PVSFHRKKNLQYYEISAKSNYNFERPF 161 (216)
T ss_pred c--------ccccc------cceeeecccceeEEeecccccccccch
Confidence 1 11111 112222346789999999999988753
No 391
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.82 E-value=0.00011 Score=65.90 Aligned_cols=59 Identities=24% Similarity=0.316 Sum_probs=38.6
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 232 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D 232 (514)
.++.+.||||||.... ....+..||.+|+|+....+ .....++. ..+.... +++|||+|
T Consensus 90 ~~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~----------D~y~~~k~-~~~~~~~-~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAG----------DDIQAIKA-GIMEIAD-IVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccChh---hhhHHHhCCEEEEEECCCch----------hHHHHhhh-hHhhhcC-EEEEeCCC
Confidence 3678999999996533 34567899999999987733 12222222 2233332 57999998
No 392
>PRK00098 GTPase RsgA; Reviewed
Probab=97.81 E-value=4e-05 Score=77.08 Aligned_cols=82 Identities=24% Similarity=0.374 Sum_probs=54.8
Q ss_pred hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcc
Q 010278 182 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 261 (514)
Q Consensus 182 ~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~ 261 (514)
++.+|.+++|+|+.+..+. .....+.+..+...++| +++|+||+|+. + .....+ .....++..+
T Consensus 78 aaniD~vllV~d~~~p~~~-----~~~idr~L~~~~~~~ip-~iIVlNK~DL~--~-~~~~~~----~~~~~~~~~g--- 141 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFS-----TDLLDRFLVLAEANGIK-PIIVLNKIDLL--D-DLEEAR----ELLALYRAIG--- 141 (298)
T ss_pred eecCCEEEEEEECCCCCCC-----HHHHHHHHHHHHHCCCC-EEEEEEhHHcC--C-CHHHHH----HHHHHHHHCC---
Confidence 6899999999999765321 11234455556778898 88999999993 2 111222 2223334444
Q ss_pred cCCeeEEeecccccccccccc
Q 010278 262 KKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 262 ~~~~~iipiSa~~G~gi~~l~ 282 (514)
.+++++||++|.|+.++.
T Consensus 142 ---~~v~~vSA~~g~gi~~L~ 159 (298)
T PRK00098 142 ---YDVLELSAKEGEGLDELK 159 (298)
T ss_pred ---CeEEEEeCCCCccHHHHH
Confidence 479999999999998754
No 393
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.80 E-value=2.1e-05 Score=76.77 Aligned_cols=64 Identities=27% Similarity=0.192 Sum_probs=39.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
..++++|++|+|||||+|+|+.....-. |.-+ ....+.+..|.+...+.+ .+ .
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t--------------~~i~---------~~~~~G~hTT~~~~l~~l--~~--~ 173 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQV--------------NDIS---------SKLGLGKHTTTHVELFHF--HG--G 173 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccc--------------ccee---------ccCCCCCCcCCceEEEEc--CC--c
Confidence 4789999999999999999965432110 0000 001223456666655555 22 3
Q ss_pred EEEeCCCCcch
Q 010278 164 TILDAPGHKSY 174 (514)
Q Consensus 164 ~liDtPGh~~f 174 (514)
.|+||||...|
T Consensus 174 ~liDtPG~~~~ 184 (245)
T TIGR00157 174 LIADTPGFNEF 184 (245)
T ss_pred EEEeCCCcccc
Confidence 79999997664
No 394
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.78 E-value=0.00012 Score=76.99 Aligned_cols=63 Identities=24% Similarity=0.415 Sum_probs=39.6
Q ss_pred CeEEEEEeCCCCcchHHHH------HHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-HcCCCeEEEEEeecc
Q 010278 160 TTRFTILDAPGHKSYVPNM------ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMD 232 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~------~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~-~~~vp~~IvviNK~D 232 (514)
.+.+.||||||...+-... +..+..+|.++||+||+.| ....+.+.... .+++. -+++||+|
T Consensus 175 ~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g---------q~av~~a~~F~~~l~i~--gvIlTKlD 243 (437)
T PRK00771 175 KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG---------QQAKNQAKAFHEAVGIG--GIIITKLD 243 (437)
T ss_pred cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc---------HHHHHHHHHHHhcCCCC--EEEEeccc
Confidence 3478999999966543222 2334578999999999876 12233322222 23333 46899999
Q ss_pred C
Q 010278 233 D 233 (514)
Q Consensus 233 ~ 233 (514)
.
T Consensus 244 ~ 244 (437)
T PRK00771 244 G 244 (437)
T ss_pred C
Confidence 7
No 395
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.75 E-value=7.5e-05 Score=74.71 Aligned_cols=92 Identities=20% Similarity=0.241 Sum_probs=58.6
Q ss_pred CCCCcch-HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHH
Q 010278 168 APGHKSY-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEI 246 (514)
Q Consensus 168 tPGh~~f-~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i 246 (514)
-|||-.- .++....+..+|++|+|+||..+.. ....+...+.. +.| +++++||+|+ .+ ....+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~-------~~~~~l~~~~~--~kp-~iiVlNK~DL--~~--~~~~~~- 71 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLS-------SENPMIDKIIG--NKP-RLLILNKSDL--AD--PEVTKK- 71 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCC-------CCChhHHHHhC--CCC-EEEEEEchhc--CC--HHHHHH-
Confidence 4888544 5555666789999999999987632 23333333322 667 8899999998 32 111222
Q ss_pred HhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 247 ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 247 ~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
...+++..+ .+++++||.++.|+..+.+
T Consensus 72 ---~~~~~~~~~------~~vi~vSa~~~~gi~~L~~ 99 (287)
T PRK09563 72 ---WIEYFEEQG------IKALAINAKKGQGVKKILK 99 (287)
T ss_pred ---HHHHHHHcC------CeEEEEECCCcccHHHHHH
Confidence 222222222 4689999999999987544
No 396
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.0003 Score=71.13 Aligned_cols=143 Identities=16% Similarity=0.249 Sum_probs=84.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC-
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 160 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~- 160 (514)
-..++.++|..|.|||||+|.|..+.- ..+++ ............++......++-++
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l-~~~~~---------------------~~~~~~~~~~t~~i~~~~~~iee~g~ 77 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDL-SGNRE---------------------VPGASERIKETVEIESTKVEIEENGV 77 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhc-cCCcc---------------------cCCcccCccccceeeeeeeeecCCCe
Confidence 348999999999999999999965411 11100 0001111122334444444444444
Q ss_pred -eEEEEEeCCCCcch-------------HHHHHHh------------h--hhcCEEEEEEECC-CCcccccccCCcchHH
Q 010278 161 -TRFTILDAPGHKSY-------------VPNMISG------------A--SQADIGVLVISAR-KGEFETGFEKGGQTRE 211 (514)
Q Consensus 161 -~~i~liDtPGh~~f-------------~~~~~~g------------~--~~~D~ailVVda~-~g~~e~~~~~~~qt~e 211 (514)
.+++++||||.-++ +...... . ...+++|+.|... +| +.+...+
T Consensus 78 ~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-------L~p~Di~ 150 (366)
T KOG2655|consen 78 KLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-------LKPLDIE 150 (366)
T ss_pred EEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-------CcHhhHH
Confidence 46789999995443 1111110 1 1578999999965 34 2345555
Q ss_pred HHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccC
Q 010278 212 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 259 (514)
Q Consensus 212 ~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~ 259 (514)
.+..+. .++. +|-||-|.|.. ........+..+...+...++
T Consensus 151 ~Mk~l~-~~vN-iIPVI~KaD~l----T~~El~~~K~~I~~~i~~~nI 192 (366)
T KOG2655|consen 151 FMKKLS-KKVN-LIPVIAKADTL----TKDELNQFKKRIRQDIEEHNI 192 (366)
T ss_pred HHHHHh-cccc-ccceeeccccC----CHHHHHHHHHHHHHHHHHcCc
Confidence 443332 3566 88899999984 345677777777777776654
No 397
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.00027 Score=70.55 Aligned_cols=133 Identities=21% Similarity=0.217 Sum_probs=84.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCc--cchhhhhhccCchhhhhcccEEEeee-EEEE-
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSR--ESWYMAYIMDTNEEERIKGKTVEVGR-AHFE- 157 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~--~s~~~~~~~d~~~~e~~~giT~~~~~-~~~~- 157 (514)
..+-|.++|.-..||||+++.|+...-- ....|. +.-.+..+|-...++.-.|.+..+.. ..|.
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dyp------------g~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~g 124 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYP------------GLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRG 124 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCC------------ccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhh
Confidence 3467999999999999999999653210 001121 12223334544455555666554431 1111
Q ss_pred ----------------eCC---eEEEEEeCCCCcc-----------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCc
Q 010278 158 ----------------TET---TRFTILDAPGHKS-----------YVPNMISGASQADIGVLVISARKGEFETGFEKGG 207 (514)
Q Consensus 158 ----------------~~~---~~i~liDtPGh~~-----------f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~ 207 (514)
..+ ..++||||||.-. |..-..--+..||.++|+.|+..-. ...
T Consensus 125 L~~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLD------Isd 198 (532)
T KOG1954|consen 125 LNKFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLD------ISD 198 (532)
T ss_pred hhhhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhcc------ccH
Confidence 011 3599999999533 3332333357899999999998632 346
Q ss_pred chHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 208 QTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 208 qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
.+.+.+..++...-+ +=||+||.|.
T Consensus 199 Ef~~vi~aLkG~Edk-iRVVLNKADq 223 (532)
T KOG1954|consen 199 EFKRVIDALKGHEDK-IRVVLNKADQ 223 (532)
T ss_pred HHHHHHHHhhCCcce-eEEEeccccc
Confidence 788888888877655 7789999998
No 398
>PRK12289 GTPase RsgA; Reviewed
Probab=97.71 E-value=3.4e-05 Score=78.94 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 010278 85 NVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
.++++|.+|+|||||+|+|+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc
Confidence 4899999999999999999644
No 399
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=97.69 E-value=0.00035 Score=57.51 Aligned_cols=66 Identities=18% Similarity=0.349 Sum_probs=47.5
Q ss_pred EEEEEEE--ccC-CeEEEEEEeeeeeecCCEEEEecCC---------cEEEEEEEEEC----CeeeeecCCCCeEEEEcc
Q 010278 315 MPIIDKF--KDM-GTVVMGKVESGSVREGDSLLVMPNK---------AQVKVLAIYCD----DNRVRHAGPGENLRIRLS 378 (514)
Q Consensus 315 ~~i~~~~--~~~-G~v~~g~v~sG~l~~gd~v~~~p~~---------~~~~V~si~~~----~~~v~~a~aG~~v~~~l~ 378 (514)
+.|..+. +.. |.++.+||.||+|+.||.|++...+ ...+|..|... ..++++|.|||+|++ .
T Consensus 3 a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v--~ 80 (94)
T cd04090 3 VHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLI--K 80 (94)
T ss_pred EEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEE--E
Confidence 3455544 233 5689999999999999999875321 24677787754 468999999999995 5
Q ss_pred CCCc
Q 010278 379 GIEE 382 (514)
Q Consensus 379 ~~~~ 382 (514)
|++.
T Consensus 81 gl~~ 84 (94)
T cd04090 81 GIDS 84 (94)
T ss_pred Ccch
Confidence 5433
No 400
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.68 E-value=0.00022 Score=72.99 Aligned_cols=132 Identities=20% Similarity=0.229 Sum_probs=76.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchh------HHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeE
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDR------TIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA 154 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~------~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~ 154 (514)
.+...|+++|+.|+||||.+-.|.......... .++.|+-.+.++- ..|+.+| |+.+.....
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQL---k~Ya~im---------~vp~~vv~~ 268 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQL---KTYADIM---------GVPLEVVYS 268 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHH---HHHHHHh---------CCceEEecC
Confidence 347899999999999999999886544411110 1111111111110 0122222 333333221
Q ss_pred E-------EEeCCeEEEEEeCCCCcchHHHHHHhh------hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCC
Q 010278 155 H-------FETETTRFTILDAPGHKSYVPNMISGA------SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV 221 (514)
Q Consensus 155 ~-------~~~~~~~i~liDtPGh~~f~~~~~~g~------~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~v 221 (514)
. .....+.+.|+||.|+..+-...+..+ ....-..||++|+.-- .-.++.+......++
T Consensus 269 ~~el~~ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--------~dlkei~~~f~~~~i 340 (407)
T COG1419 269 PKELAEAIEALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--------EDLKEIIKQFSLFPI 340 (407)
T ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--------HHHHHHHHHhccCCc
Confidence 1 112467899999999876633322222 2456678889987541 245666777777888
Q ss_pred CeEEEEEeeccCC
Q 010278 222 TKLLLVVNKMDDH 234 (514)
Q Consensus 222 p~~IvviNK~D~~ 234 (514)
..+ ++||+|.+
T Consensus 341 ~~~--I~TKlDET 351 (407)
T COG1419 341 DGL--IFTKLDET 351 (407)
T ss_pred cee--EEEccccc
Confidence 854 69999984
No 401
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.68 E-value=0.00016 Score=68.39 Aligned_cols=65 Identities=20% Similarity=0.395 Sum_probs=51.6
Q ss_pred CCeEEEEEeC-CCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 159 ETTRFTILDA-PGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 159 ~~~~i~liDt-PGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
+.+.+.++|| +|.+.|-+-+ +..+|++|+|+|.+...+ ...++.-.++..+|++++.+++||+|.
T Consensus 132 ~~~e~VivDtEAGiEHfgRg~---~~~vD~vivVvDpS~~sl-------~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 132 NRYEVVIVDTEAGIEHFGRGT---IEGVDLVIVVVDPSYKSL-------RTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred ccCcEEEEecccchhhhcccc---ccCCCEEEEEeCCcHHHH-------HHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 3477999999 5777777655 356899999999886533 356667788899998889999999996
No 402
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=97.67 E-value=0.0003 Score=57.98 Aligned_cols=60 Identities=22% Similarity=0.375 Sum_probs=51.1
Q ss_pred eEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC-CeeeeecCCCCeEEE
Q 010278 314 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRI 375 (514)
Q Consensus 314 ~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~-~~~v~~a~aG~~v~~ 375 (514)
+..|.++. ++.|.+++..|.+|+|++||.++. +....+|+++... ++.+.+|.|++.|.+
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~--G~~~GkVr~~~d~~g~~v~~a~Ps~~v~i 64 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVA--GGTYGKIRTMVDENGKALLEAGPSTPVEI 64 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEE--CCccceEEEEECCCCCCccccCCCCCEEE
Confidence 34566665 688999999999999999999999 5567899999886 678999999999864
No 403
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.67 E-value=0.00015 Score=65.88 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 010278 85 NVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
.+.++|..|+|||||+++|+..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 5789999999999999998754
No 404
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=97.67 E-value=0.00032 Score=58.78 Aligned_cols=77 Identities=21% Similarity=0.325 Sum_probs=59.9
Q ss_pred eEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCC--cEEEEEEEEECCe-----------eeeecCCCCeEEEEcc
Q 010278 314 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDN-----------RVRHAGPGENLRIRLS 378 (514)
Q Consensus 314 ~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~--~~~~V~si~~~~~-----------~v~~a~aG~~v~~~l~ 378 (514)
+..|.++. +|.|++++..|++|+|+.||.|+++..+ ...+||+|...+. +++++.|...+-+...
T Consensus 2 ~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~ 81 (110)
T cd03703 2 QGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAP 81 (110)
T ss_pred cEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeC
Confidence 45677776 6899999999999999999999997765 3579999988753 8899997777777666
Q ss_pred CCCcccceeeeEEc
Q 010278 379 GIEEEDILSGFVLS 392 (514)
Q Consensus 379 ~~~~~~i~~G~vl~ 392 (514)
|++. +..|+-+.
T Consensus 82 gL~~--v~aG~~~~ 93 (110)
T cd03703 82 DLEK--AIAGSPLL 93 (110)
T ss_pred CCcc--ccCCCEEE
Confidence 6544 35566543
No 405
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.66 E-value=0.00045 Score=67.84 Aligned_cols=56 Identities=25% Similarity=0.344 Sum_probs=47.4
Q ss_pred HcCCCeEEEEEeeccCC-----CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccc
Q 010278 218 TLGVTKLLLVVNKMDDH-----TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 280 (514)
Q Consensus 218 ~~~vp~~IvviNK~D~~-----~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~ 280 (514)
.+|+| ++||++|+|.. +.+|..+.|+.|...++.|+-++|- ..|.+|++...|++-
T Consensus 220 NlGi~-vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga------aLiyTSvKE~KNidl 280 (473)
T KOG3905|consen 220 NLGIP-VLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA------ALIYTSVKETKNIDL 280 (473)
T ss_pred cCCCc-EEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc------eeEEeecccccchHH
Confidence 35777 89999999972 4568889999999999999998874 689999999999875
No 406
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.0003 Score=72.89 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=42.5
Q ss_pred CCeEEEEEeCCCCcch----HHHHHHhhh--hcC-EEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeec
Q 010278 159 ETTRFTILDAPGHKSY----VPNMISGAS--QAD-IGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 231 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f----~~~~~~g~~--~~D-~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~ 231 (514)
.++.+.||||||.... +..+..-+. .++ -.+||+||+.+. ....+.+.....+++.. +++||+
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--------~~~~~~~~~~~~~~~~~--~I~TKl 322 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--------SDVKEIFHQFSPFSYKT--VIFTKL 322 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--------HHHHHHHHHhcCCCCCE--EEEEec
Confidence 5678999999996443 222222222 223 689999999873 23445555555567774 479999
Q ss_pred cCC
Q 010278 232 DDH 234 (514)
Q Consensus 232 D~~ 234 (514)
|..
T Consensus 323 Det 325 (388)
T PRK12723 323 DET 325 (388)
T ss_pred cCC
Confidence 983
No 407
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=0.00024 Score=74.15 Aligned_cols=66 Identities=15% Similarity=0.258 Sum_probs=42.8
Q ss_pred eCCeEEEEEeCCCCcchHHHH---HHh---hhhcCEEEEEEECCCCcccccccCCcchHH-HHHHHHHcCCCeEEEEEee
Q 010278 158 TETTRFTILDAPGHKSYVPNM---ISG---ASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKTLGVTKLLLVVNK 230 (514)
Q Consensus 158 ~~~~~i~liDtPGh~~f~~~~---~~g---~~~~D~ailVVda~~g~~e~~~~~~~qt~e-~l~~~~~~~vp~~IvviNK 230 (514)
..++.+.||||+|........ +.. ....+-.+||+||+.+ .++.+ .+......++.. +++||
T Consensus 267 l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~---------~~~~~~~~~~f~~~~~~~--~I~TK 335 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS---------GDTLDEVISAYQGHGIHG--CIITK 335 (420)
T ss_pred hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC---------HHHHHHHHHHhcCCCCCE--EEEEe
Confidence 356789999999976543322 222 2335678999999865 24333 444445567774 47999
Q ss_pred ccCC
Q 010278 231 MDDH 234 (514)
Q Consensus 231 ~D~~ 234 (514)
+|..
T Consensus 336 lDEt 339 (420)
T PRK14721 336 VDEA 339 (420)
T ss_pred eeCC
Confidence 9983
No 408
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.61 E-value=5.7e-05 Score=74.49 Aligned_cols=66 Identities=27% Similarity=0.262 Sum_probs=40.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeE
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 162 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~ 162 (514)
....+++|+.|+|||||+|+|+....+-.. + +.. ...+-+..|.....+.+...+
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~--------e-------------IS~--~~~rGkHTTt~~~l~~l~~gG-- 218 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTG--------E-------------ISE--KLGRGRHTTTHVELFPLPGGG-- 218 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhhhhh--------h-------------hcc--cCCCCCCccceEEEEEcCCCC--
Confidence 347899999999999999999542221000 0 000 012334556666655554333
Q ss_pred EEEEeCCCCcch
Q 010278 163 FTILDAPGHKSY 174 (514)
Q Consensus 163 i~liDtPGh~~f 174 (514)
.||||||.+.|
T Consensus 219 -~iiDTPGf~~~ 229 (301)
T COG1162 219 -WIIDTPGFRSL 229 (301)
T ss_pred -EEEeCCCCCcc
Confidence 58999998766
No 409
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.60 E-value=0.00016 Score=73.89 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=28.5
Q ss_pred eEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCC
Q 010278 161 TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 196 (514)
Q Consensus 161 ~~i~liDtPGh~~-------f~~~~~~g~~~~D~ailVVda~~ 196 (514)
..+.++|.||... .-...+.-++.+|+.+.||++..
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 4689999999533 45566677899999999999864
No 410
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.00055 Score=71.01 Aligned_cols=66 Identities=17% Similarity=0.277 Sum_probs=43.1
Q ss_pred CCeEEEEEeCCCCcch----HHHH---HHhh--hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe
Q 010278 159 ETTRFTILDAPGHKSY----VPNM---ISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 229 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f----~~~~---~~g~--~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviN 229 (514)
.++.+.||||||.... +..+ .... ....-.+||+||+.+. .+..+.+......++.. ++++
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--------~~~~~~~~~f~~~~~~g--lIlT 367 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--------HHTLTVLKAYESLNYRR--ILLT 367 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--------HHHHHHHHHhcCCCCCE--EEEE
Confidence 4678899999997533 2222 2211 1245789999999872 24555555556678774 4799
Q ss_pred eccCC
Q 010278 230 KMDDH 234 (514)
Q Consensus 230 K~D~~ 234 (514)
|+|..
T Consensus 368 KLDEt 372 (432)
T PRK12724 368 KLDEA 372 (432)
T ss_pred cccCC
Confidence 99983
No 411
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.59 E-value=9.5e-05 Score=72.49 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=48.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
.....++-|+|-||+|||||+|++......... ....+.+.|+|+.+....--..
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k-------------------------~a~vG~~pGVT~~V~~~iri~~ 194 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKK-------------------------AARVGAEPGVTRRVSERIRISH 194 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhcc-------------------------ceeccCCCCceeeehhheEecc
Confidence 456789999999999999999998544332110 1114456999999887554456
Q ss_pred CeEEEEEeCCC
Q 010278 160 TTRFTILDAPG 170 (514)
Q Consensus 160 ~~~i~liDtPG 170 (514)
...+.++||||
T Consensus 195 rp~vy~iDTPG 205 (335)
T KOG2485|consen 195 RPPVYLIDTPG 205 (335)
T ss_pred CCceEEecCCC
Confidence 67799999999
No 412
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.58 E-value=0.00063 Score=74.47 Aligned_cols=179 Identities=17% Similarity=0.245 Sum_probs=124.9
Q ss_pred EeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe-eccCCCCCchHHHHH
Q 010278 166 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKERYD 244 (514)
Q Consensus 166 iDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviN-K~D~~~~~~~~~~~~ 244 (514)
-|+-|.-.-+...+..++..++-+-|+.+.-| +-|+..+.++...+. +|++.| |.+.
T Consensus 392 ad~~Gs~eal~~~l~~~~~~~~~~~v~~~~vG---------~i~~~Dv~~a~~~~a--~i~~Fnv~~~~----------- 449 (587)
T TIGR00487 392 ADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVG---------GITETDISLASASNA--IIIGFNVRPDA----------- 449 (587)
T ss_pred eCCcchHHHHHHHHHhhcccCCeEEEEEeecC---------CCchhhHHHHHhcCC--EEEEEecCCCH-----------
Confidence 58889888888888888888889999999877 467888888888863 566776 3332
Q ss_pred HHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEEEEEEEc--
Q 010278 245 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK-- 322 (514)
Q Consensus 245 ~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~i~~~~~-- 322 (514)
..+...++.| ++++.-+ =|-++++. +.+.+..+..|......--+..|..+|+
T Consensus 450 ----~~~~~a~~~~------v~i~~~~-----iIY~l~d~----------~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~ 504 (587)
T TIGR00487 450 ----TAKNVAEAEN------VDIRYYS-----VIYKLIDE----------IRAAMKGMLDPEYEEEIIGQAEVRQVFNVP 504 (587)
T ss_pred ----HHHHHHHHcC------CeEEEeC-----hHHHHHHH----------HHHHHHhccCcceeeEeeeeEEEEEEEecC
Confidence 1222233333 3443321 12222221 3333433333332222233566677884
Q ss_pred cCCeEEEEEEeeeeeecCCEEEEecCCc---EEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEcc
Q 010278 323 DMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 393 (514)
Q Consensus 323 ~~G~v~~g~v~sG~l~~gd~v~~~p~~~---~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~ 393 (514)
..|.++.++|..|+|+.|..+++...+. ..+|.||+++++++.++..|+-|++.+.+. .+++.||+|-.
T Consensus 505 ~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~--~~~~~gD~i~~ 576 (587)
T TIGR00487 505 KIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIKNY--NDIKEGDIIEA 576 (587)
T ss_pred CCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEEecc--ccCCCCCEEEE
Confidence 4589999999999999999999988764 468999999999999999999999999975 67999999853
No 413
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00015 Score=73.13 Aligned_cols=90 Identities=13% Similarity=0.145 Sum_probs=53.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEE------
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF------ 156 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~------ 156 (514)
.+.++|+|-||+|||||+|+|......+ -.|.|.+ .+...|+..-.. ..+
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~-------------------aNYPF~T----IePN~Giv~v~d-~rl~~L~~~ 57 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEI-------------------ANYPFCT----IEPNVGVVYVPD-CRLDELAEI 57 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccc-------------------cCCCccc----ccCCeeEEecCc-hHHHHHHHh
Confidence 4789999999999999999994322111 1122211 122222211111 000
Q ss_pred E-----eCCeEEEEEeCCCC-------cchHHHHHHhhhhcCEEEEEEECCC
Q 010278 157 E-----TETTRFTILDAPGH-------KSYVPNMISGASQADIGVLVISARK 196 (514)
Q Consensus 157 ~-----~~~~~i~liDtPGh-------~~f~~~~~~g~~~~D~ailVVda~~ 196 (514)
. +--..+.|+|.+|. +-.-+..+.-++.+|+++.|||+..
T Consensus 58 ~~c~~k~~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 58 VKCPPKIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred cCCCCcEEeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 0 01135889999994 2245555666899999999999974
No 414
>PRK10867 signal recognition particle protein; Provisional
Probab=97.57 E-value=0.00039 Score=73.02 Aligned_cols=64 Identities=22% Similarity=0.323 Sum_probs=38.4
Q ss_pred CCeEEEEEeCCCCcch----HHHHHH--hhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-HcCCCeEEEEEeec
Q 010278 159 ETTRFTILDAPGHKSY----VPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 231 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f----~~~~~~--g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~-~~~vp~~IvviNK~ 231 (514)
.++.+.||||||.... +..... ....+|-++||+|+..| ....+.+.... ..++. -+++||+
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---------q~av~~a~~F~~~~~i~--giIlTKl 250 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---------QDAVNTAKAFNEALGLT--GVILTKL 250 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---------HHHHHHHHHHHhhCCCC--EEEEeCc
Confidence 4577999999995432 222111 12368889999999765 12223332222 34454 3578999
Q ss_pred cC
Q 010278 232 DD 233 (514)
Q Consensus 232 D~ 233 (514)
|.
T Consensus 251 D~ 252 (433)
T PRK10867 251 DG 252 (433)
T ss_pred cC
Confidence 96
No 415
>PRK13796 GTPase YqeH; Provisional
Probab=97.54 E-value=9.1e-05 Score=76.59 Aligned_cols=62 Identities=23% Similarity=0.253 Sum_probs=41.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeE
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 162 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~ 162 (514)
..++.++|.+|+|||||+|+|+....... +.....+.+|.|.+.....+. ..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~-------------------------~~~~~s~~pGTT~~~~~~~l~---~~ 211 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEK-------------------------DVITTSRFPGTTLDKIEIPLD---DG 211 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCcc-------------------------ceEEecCCCCccceeEEEEcC---CC
Confidence 35799999999999999999975431100 000123447888876655442 22
Q ss_pred EEEEeCCCCc
Q 010278 163 FTILDAPGHK 172 (514)
Q Consensus 163 i~liDtPGh~ 172 (514)
..++||||..
T Consensus 212 ~~l~DTPGi~ 221 (365)
T PRK13796 212 SFLYDTPGII 221 (365)
T ss_pred cEEEECCCcc
Confidence 4899999963
No 416
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.54 E-value=0.00011 Score=75.94 Aligned_cols=89 Identities=15% Similarity=0.222 Sum_probs=53.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
.+|.++|.+|+|||||+|+|+........ ........|.|.+.....+ +..+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~-------------------------~~~~s~~pgtT~~~~~~~~---~~~~ 206 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKD-------------------------VITTSPFPGTTLDLIEIPL---DDGH 206 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcc-------------------------eeeecCCCCeEeeEEEEEe---CCCC
Confidence 58999999999999999999764321000 0012234788877654443 2346
Q ss_pred EEEeCCCCcch--HHHHHH--------hhhhcCEEEEEEECCCCccc
Q 010278 164 TILDAPGHKSY--VPNMIS--------GASQADIGVLVISARKGEFE 200 (514)
Q Consensus 164 ~liDtPGh~~f--~~~~~~--------g~~~~D~ailVVda~~g~~e 200 (514)
.++||||.... +...+. .........+.++..+..+-
T Consensus 207 ~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ 253 (360)
T TIGR03597 207 SLYDTPGIINSHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFL 253 (360)
T ss_pred EEEECCCCCChhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEE
Confidence 79999996432 111111 11234566777777665553
No 417
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.53 E-value=0.0012 Score=73.61 Aligned_cols=180 Identities=14% Similarity=0.112 Sum_probs=126.6
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe-eccCCCCCchHHHH
Q 010278 165 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKERY 243 (514)
Q Consensus 165 liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviN-K~D~~~~~~~~~~~ 243 (514)
=-|+-|.-.-+...+..+....+-+-|+.+.-| +-|...+.++...+. +|++.| |.+.
T Consensus 548 Kad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG---------~it~~Dv~lA~~~~a--~ii~Fnv~~~~---------- 606 (742)
T CHL00189 548 KTDTQGSIEAIINSISQIPQKKVQLNILYASLG---------EVTETDVEFASTTNA--EILAFNTNLAP---------- 606 (742)
T ss_pred EeCCcchHHHHHHHHHhcCCCcEEEEEEEeecC---------CCCHHHHHHHHhcCC--EEEEeeCCCCH----------
Confidence 369999988898998888888889999999877 468888888888873 566776 3331
Q ss_pred HHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEEEEEEEc-
Q 010278 244 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK- 322 (514)
Q Consensus 244 ~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~i~~~~~- 322 (514)
.+....++.| +.+..-+ =|-++++. +.+++..+..|.......-++.|..+|+
T Consensus 607 -----~~~~~a~~~~------v~i~~~~-----iIY~lid~----------~~~~~~~~l~~~~~~~~~g~a~v~~vF~~ 660 (742)
T CHL00189 607 -----GAKKAARKLN------IIIKEYQ-----VIYDLLEY----------IEALMEDLLDPEYKKVPIGEAEVKTVFPL 660 (742)
T ss_pred -----HHHHHHHHcC------CEEEEeC-----hHHHHHHH----------HHHHHhhccCceeeeeeceeEEeeEEEec
Confidence 1122223332 3443321 12222221 3333433333333333344667888884
Q ss_pred cCCeEEEEEEeeeeeecCCEEEEecCCc---EEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEcc
Q 010278 323 DMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 393 (514)
Q Consensus 323 ~~G~v~~g~v~sG~l~~gd~v~~~p~~~---~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~ 393 (514)
..|.++.++|.+|.|+.|..++++..+. ..+|.||+++..++.++..|+-|++.+.+. .+++.||+|-.
T Consensus 661 ~k~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~~--~d~~~gD~ie~ 732 (742)
T CHL00189 661 AKRFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIEEF--QLWQSGDKIHA 732 (742)
T ss_pred CCCEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEeeCC--CCCCcCCEEEE
Confidence 4589999999999999999999998874 468999999999999999999999999965 56999999843
No 418
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.53 E-value=0.00018 Score=71.92 Aligned_cols=80 Identities=20% Similarity=0.173 Sum_probs=53.0
Q ss_pred hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcc
Q 010278 182 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 261 (514)
Q Consensus 182 ~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~ 261 (514)
+..+|.+++|+|+..+.+. . ....+.+..+...++| +++|+||+|+. +..+ .. .. .......|
T Consensus 76 ~anvD~vllV~d~~~p~~s----~-~~ldr~L~~~~~~~ip-~iIVlNK~DL~--~~~~-~~----~~-~~~~~~~g--- 138 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFN----P-RLLDRYLVAAEAAGIE-PVIVLTKADLL--DDEE-EE----LE-LVEALALG--- 138 (287)
T ss_pred EEeCCEEEEEEEcCCCCCC----H-HHHHHHHHHHHHcCCC-EEEEEEHHHCC--ChHH-HH----HH-HHHHHhCC---
Confidence 5789999999999876421 0 1334456666778888 88999999993 2111 11 11 11122233
Q ss_pred cCCeeEEeeccccccccccc
Q 010278 262 KKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 262 ~~~~~iipiSa~~G~gi~~l 281 (514)
.+++++||++|.|++++
T Consensus 139 ---~~v~~vSA~~g~gi~~L 155 (287)
T cd01854 139 ---YPVLAVSAKTGEGLDEL 155 (287)
T ss_pred ---CeEEEEECCCCccHHHH
Confidence 58999999999999874
No 419
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=0.00023 Score=72.70 Aligned_cols=66 Identities=12% Similarity=0.240 Sum_probs=39.6
Q ss_pred CCeEEEEEeCCCCcch----HHHHHHhh--hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010278 159 ETTRFTILDAPGHKSY----VPNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 232 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f----~~~~~~g~--~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D 232 (514)
.++.+.||||||...+ +..+.... ..+|..+||+++.... .+..+.+......++.. +++||+|
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~--------~d~~~i~~~f~~l~i~g--lI~TKLD 353 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKS--------ADVMTILPKLAEIPIDG--FIITKMD 353 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccH--------HHHHHHHHhcCcCCCCE--EEEEccc
Confidence 3578999999998544 33322211 2568888898875331 12333333344556663 5799999
Q ss_pred CC
Q 010278 233 DH 234 (514)
Q Consensus 233 ~~ 234 (514)
..
T Consensus 354 ET 355 (407)
T PRK12726 354 ET 355 (407)
T ss_pred CC
Confidence 83
No 420
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.00014 Score=68.65 Aligned_cols=154 Identities=18% Similarity=0.232 Sum_probs=95.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
++|.++|+--+|||++-....++..-.. +.-.|....+|.+- +...=..+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPne--------------------------TlflESTski~~d~----is~sfinf 77 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNE--------------------------TLFLESTSKITRDH----ISNSFINF 77 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCc--------------------------eeEeeccCcccHhh----hhhhhcce
Confidence 4599999999999998776543322100 00011112222221 11122467
Q ss_pred EEEeCCCCcchHHHHH---HhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCC---eEEEEEeeccCCCCC
Q 010278 164 TILDAPGHKSYVPNMI---SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT---KLLLVVNKMDDHTVN 237 (514)
Q Consensus 164 ~liDtPGh~~f~~~~~---~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp---~~IvviNK~D~~~~~ 237 (514)
.+||.||+-+|..-.. .-.+.+-+.|+||||.+.-++ +-++-|+...++.++. .+=|.|-|.|-...+
T Consensus 78 ~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~e------ala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 78 QVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYME------ALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred EEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHH------HHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 8999999877743221 224678889999999887543 6677788888887543 267899999986555
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM 274 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~ 274 (514)
+.-+.-..+..+...-|+..|.. +-.+.|.-+|-..
T Consensus 152 ~kietqrdI~qr~~d~l~d~gle-~v~vsf~LTSIyD 187 (347)
T KOG3887|consen 152 FKIETQRDIHQRTNDELADAGLE-KVQVSFYLTSIYD 187 (347)
T ss_pred hhhhhHHHHHHHhhHHHHhhhhc-cceEEEEEeeecc
Confidence 54455556666666667777764 2234566666543
No 421
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.51 E-value=0.0019 Score=72.61 Aligned_cols=178 Identities=18% Similarity=0.233 Sum_probs=124.6
Q ss_pred EeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe-eccCCCCCchHHHHH
Q 010278 166 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKERYD 244 (514)
Q Consensus 166 iDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviN-K~D~~~~~~~~~~~~ 244 (514)
-|+-|.-.-+...+..++.-++-+-|+.+.-| +-|...+.++...+. +|+..| |.+.
T Consensus 594 ad~~Gs~eai~~~l~~l~~~~v~~~i~~~~vG---------~it~~Dv~la~~~~a--~ii~Fnv~~~~----------- 651 (787)
T PRK05306 594 ADVQGSVEALKDSLEKLSTDEVKVNIIHSGVG---------AITESDVTLAAASNA--IIIGFNVRPDA----------- 651 (787)
T ss_pred eCCcchHHHHHHHHHhhcccCCceEEEeeccC---------CCCHHHHHHHHhcCC--EEEEEcCCCCH-----------
Confidence 58889888888888888888999999999877 467788888887763 566776 3332
Q ss_pred HHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEEEEEEEc--
Q 010278 245 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK-- 322 (514)
Q Consensus 245 ~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~i~~~~~-- 322 (514)
.+....++.| +.+..-+- |-++++. +.+++..+..|.....-.-...|..+|+
T Consensus 652 ----~~~~~a~~~~------v~i~~~~i-----IY~l~d~----------~~~~~~~~l~~~~~e~~~g~a~v~~vF~~~ 706 (787)
T PRK05306 652 ----KARKLAEQEG------VDIRYYSI-----IYDLIDD----------VKAAMSGMLEPEYEEEIIGQAEVREVFKVS 706 (787)
T ss_pred ----HHHHHHHHcC------CEEEEeCh-----HHHHHHH----------HHHHHhhccCchhheeeeeeEEEEEEEecC
Confidence 1222222322 33433221 1122211 2233333333332222233566778884
Q ss_pred cCCeEEEEEEeeeeeecCCEEEEecCCc---EEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEc
Q 010278 323 DMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 392 (514)
Q Consensus 323 ~~G~v~~g~v~sG~l~~gd~v~~~p~~~---~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~ 392 (514)
..|.++.++|..|.|+.|..+.+...+. ..+|.||.++..++.++..|+-|++.+.+. .+++.||+|-
T Consensus 707 k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~--~d~~~gD~ie 777 (787)
T PRK05306 707 KVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLENY--NDIKEGDIIE 777 (787)
T ss_pred CCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEeecc--ccCCCCCEEE
Confidence 4689999999999999999999998774 578999999999999999999999999976 5799999984
No 422
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.51 E-value=0.0006 Score=71.57 Aligned_cols=64 Identities=22% Similarity=0.294 Sum_probs=39.7
Q ss_pred CCeEEEEEeCCCCcch----HHHHH--HhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-HcCCCeEEEEEeec
Q 010278 159 ETTRFTILDAPGHKSY----VPNMI--SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 231 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f----~~~~~--~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~-~~~vp~~IvviNK~ 231 (514)
.++.+.|+||||...+ +..+. .....+|-++||+|+..| ....+.+.... ..++. =+++||+
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---------q~~~~~a~~f~~~v~i~--giIlTKl 249 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---------QDAVNTAKTFNERLGLT--GVVLTKL 249 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---------HHHHHHHHHHHhhCCCC--EEEEeCc
Confidence 4577999999995433 22221 113468999999999865 13333333332 35665 3569999
Q ss_pred cC
Q 010278 232 DD 233 (514)
Q Consensus 232 D~ 233 (514)
|.
T Consensus 250 D~ 251 (428)
T TIGR00959 250 DG 251 (428)
T ss_pred cC
Confidence 96
No 423
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.50 E-value=0.0014 Score=65.31 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=23.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHh
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
.+++..|.++|-.|+||||.++.|.+..
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l 163 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYL 163 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHH
Confidence 4568889999999999999999996543
No 424
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.00053 Score=72.94 Aligned_cols=64 Identities=17% Similarity=0.177 Sum_probs=39.1
Q ss_pred CCeEEEEEeCCCCcchHHH------HHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010278 159 ETTRFTILDAPGHKSYVPN------MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 232 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~------~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D 232 (514)
.++.+.||||||...+-.. .+... .....+|||++..+. ....+.+......+. --+++||+|
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~--------~Dl~eii~~f~~~~~--~gvILTKlD 495 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHF--------SDLDEVVRRFAHAKP--QGVVLTKLD 495 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCCh--------hHHHHHHHHHHhhCC--eEEEEecCc
Confidence 4678999999996543222 12222 234678899988652 133444444444443 357899999
Q ss_pred C
Q 010278 233 D 233 (514)
Q Consensus 233 ~ 233 (514)
.
T Consensus 496 E 496 (559)
T PRK12727 496 E 496 (559)
T ss_pred C
Confidence 8
No 425
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.50 E-value=0.0001 Score=73.68 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
..++++|++|+|||||+|.|+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~ 184 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPD 184 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhch
Confidence 67999999999999999999654
No 426
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.46 E-value=0.00059 Score=71.84 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=41.7
Q ss_pred CCeEEEEEeCCCCcch-------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeec
Q 010278 159 ETTRFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 231 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f-------~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~ 231 (514)
.++.+.||||||+..+ +..++......+-+.||++++.+. ....+.+......++.. +++||+
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--------~~l~~~~~~f~~~~~~~--vI~TKl 367 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--------EDLKDIYKHFSRLPLDG--LIFTKL 367 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--------HHHHHHHHHhCCCCCCE--EEEecc
Confidence 3578999999997544 222333222456789999998652 13344445555566653 579999
Q ss_pred cC
Q 010278 232 DD 233 (514)
Q Consensus 232 D~ 233 (514)
|.
T Consensus 368 De 369 (424)
T PRK05703 368 DE 369 (424)
T ss_pred cc
Confidence 98
No 427
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.45 E-value=0.00018 Score=64.98 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll 104 (514)
...+++++|.+++|||||+++|.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~ 122 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALK 122 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 45678999999999999999995
No 428
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.40 E-value=0.0011 Score=55.94 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=44.9
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCC---eEEEEEee
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT---KLLLVVNK 230 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp---~~IvviNK 230 (514)
.+.|+|||+..... ....+..+|.+|+|+++..... ..+.+.+..+...+.+ ++.+++|+
T Consensus 44 D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDLPSI-------RNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCChHHH-------HHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 78999999976543 3456788999999999886543 3566677777777654 68889986
No 429
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.39 E-value=0.0018 Score=59.42 Aligned_cols=63 Identities=19% Similarity=0.349 Sum_probs=47.5
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
.+.|||||+.... .....+..+|.+|+|+++..... ..+...+..+...+.+.+.+++|++|.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~-------~~~~~~~~~~~~~~~~~~~iv~N~~~~ 126 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSL-------RDADRVKGLLEALGIKVVGVIVNRVRP 126 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchH-------HHHHHHHHHHHHcCCceEEEEEeCCcc
Confidence 7999999986544 34456789999999999886543 245556666666777767889999996
No 430
>PRK01889 GTPase RsgA; Reviewed
Probab=97.38 E-value=0.00041 Score=71.51 Aligned_cols=79 Identities=22% Similarity=0.190 Sum_probs=54.3
Q ss_pred hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcc
Q 010278 182 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 261 (514)
Q Consensus 182 ~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~ 261 (514)
+.++|.+++|+++..+.. .....+.+..+...|++ .++|+||+|+ .+..+ +..+.+..+ ..
T Consensus 110 aANvD~vliV~s~~p~~~------~~~ldr~L~~a~~~~i~-piIVLNK~DL--~~~~~----~~~~~~~~~--~~---- 170 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFN------LRRIERYLALAWESGAE-PVIVLTKADL--CEDAE----EKIAEVEAL--AP---- 170 (356)
T ss_pred EEeCCEEEEEEecCCCCC------hhHHHHHHHHHHHcCCC-EEEEEEChhc--CCCHH----HHHHHHHHh--CC----
Confidence 478999999999975421 12556677778889999 6789999999 33111 122222222 12
Q ss_pred cCCeeEEeeccccccccccc
Q 010278 262 KKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 262 ~~~~~iipiSa~~G~gi~~l 281 (514)
..+++++|+.+|.|+.++
T Consensus 171 --g~~Vi~vSa~~g~gl~~L 188 (356)
T PRK01889 171 --GVPVLAVSALDGEGLDVL 188 (356)
T ss_pred --CCcEEEEECCCCccHHHH
Confidence 358999999999999875
No 431
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.38 E-value=0.00077 Score=71.46 Aligned_cols=56 Identities=23% Similarity=0.390 Sum_probs=45.6
Q ss_pred cCCCeEEEEEeeccCC-----CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 219 LGVTKLLLVVNKMDDH-----TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 219 ~~vp~~IvviNK~D~~-----~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
+|+| ++||++|.|.. ..+|.++.|+-+...|+.++-++|. .+|.+|.+...|+.-|
T Consensus 195 lGip-i~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA------sL~yts~~~~~n~~~L 255 (472)
T PF05783_consen 195 LGIP-IVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA------SLIYTSVKEEKNLDLL 255 (472)
T ss_pred cCcc-eEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC------eEEEeeccccccHHHH
Confidence 3678 99999999973 2358889999999999999888864 6888999888888653
No 432
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.37 E-value=0.00097 Score=65.78 Aligned_cols=65 Identities=22% Similarity=0.312 Sum_probs=43.2
Q ss_pred CeEEEEEeCCCCcch----HHHHHHh--hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 160 TTRFTILDAPGHKSY----VPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 160 ~~~i~liDtPGh~~f----~~~~~~g--~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
++.+.||||||...+ +..+..- ...+|-.+||+||+.+. ....+.+......++.. ++++|+|.
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--------~d~~~~~~~f~~~~~~~--~I~TKlDe 223 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--------KDMIEIITNFKDIHIDG--IVFTKFDE 223 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--------HHHHHHHHHhCCCCCCE--EEEEeecC
Confidence 578999999997543 3333222 23678899999997541 23445555555567774 47999998
Q ss_pred C
Q 010278 234 H 234 (514)
Q Consensus 234 ~ 234 (514)
.
T Consensus 224 t 224 (270)
T PRK06731 224 T 224 (270)
T ss_pred C
Confidence 3
No 433
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.36 E-value=0.00042 Score=71.58 Aligned_cols=97 Identities=21% Similarity=0.173 Sum_probs=60.1
Q ss_pred CcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhh
Q 010278 171 HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKM 250 (514)
Q Consensus 171 h~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l 250 (514)
.++|......-...+|++++|+|+.+-. ......+.... .+.| +++|+||+|+...+ ...+.+.+.+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~--------~s~~~~l~~~~-~~~p-iilV~NK~DLl~k~---~~~~~~~~~l 116 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE--------GSLIPELKRFV-GGNP-VLLVGNKIDLLPKS---VNLSKIKEWM 116 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC--------CCccHHHHHHh-CCCC-EEEEEEchhhCCCC---CCHHHHHHHH
Confidence 3466654444346889999999986532 12222222111 2556 89999999984321 1233444555
Q ss_pred hhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 251 TPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 251 ~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
..+++..|+. ...++++||++|.|+.++++
T Consensus 117 ~~~~k~~g~~---~~~i~~vSAk~g~gv~eL~~ 146 (360)
T TIGR03597 117 KKRAKELGLK---PVDIILVSAKKGNGIDELLD 146 (360)
T ss_pred HHHHHHcCCC---cCcEEEecCCCCCCHHHHHH
Confidence 5556666653 12589999999999998654
No 434
>PRK12288 GTPase RsgA; Reviewed
Probab=97.34 E-value=0.00067 Score=69.51 Aligned_cols=83 Identities=19% Similarity=0.187 Sum_probs=53.1
Q ss_pred hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcc
Q 010278 182 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 261 (514)
Q Consensus 182 ~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~ 261 (514)
++++|.+++|.+..... ++ ....+.+..+...++| +|+|+||+|+. +..+ .+.+ .+....+..+|
T Consensus 118 aANvD~vlIV~s~~p~~-----s~-~~Ldr~L~~a~~~~i~-~VIVlNK~DL~--~~~~--~~~~-~~~~~~y~~~g--- 182 (347)
T PRK12288 118 AANIDQIVIVSAVLPEL-----SL-NIIDRYLVACETLGIE-PLIVLNKIDLL--DDEG--RAFV-NEQLDIYRNIG--- 182 (347)
T ss_pred EEEccEEEEEEeCCCCC-----CH-HHHHHHHHHHHhcCCC-EEEEEECccCC--CcHH--HHHH-HHHHHHHHhCC---
Confidence 57899999888875431 11 2334455566777898 78999999993 2111 1111 22222334444
Q ss_pred cCCeeEEeecccccccccccc
Q 010278 262 KKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 262 ~~~~~iipiSa~~G~gi~~l~ 282 (514)
.+++++||++|.|+.++.
T Consensus 183 ---~~v~~vSA~tg~GideL~ 200 (347)
T PRK12288 183 ---YRVLMVSSHTGEGLEELE 200 (347)
T ss_pred ---CeEEEEeCCCCcCHHHHH
Confidence 479999999999998854
No 435
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.33 E-value=0.0027 Score=56.21 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=44.2
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-CCCeEEEEEeeccC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMDD 233 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~-~vp~~IvviNK~D~ 233 (514)
+.+.++|+|+... ......+..+|.+++|++++.... ..+...+..+... +..++.+++|+++.
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s~-------~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTSI-------TDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhHH-------HHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 7899999998643 333456789999999999875432 2344455444332 34457899999985
No 436
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.32 E-value=0.0016 Score=66.94 Aligned_cols=134 Identities=20% Similarity=0.249 Sum_probs=72.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcc------------hhHHHHHHHHHhhcCccchhhhhhccCchhhh-hcc
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVD------------DRTIQKYEKEAKDKSRESWYMAYIMDTNEEER-IKG 146 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~------------~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~-~~g 146 (514)
.+++..|.++|--||||||.++.|.+....-. ....+.++.-+.+.|-..|. .-....+.+- .+|
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~--~~~~~~Pv~Iak~a 174 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFG--SGTEKDPVEIAKAA 174 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceec--CCCCCCHHHHHHHH
Confidence 55678899999999999999998854432100 00111122222222211100 0000111110 011
Q ss_pred cEEEeeeEEEEeCCeEEEEEeCCCCcc----hHHHH--HHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH--H
Q 010278 147 KTVEVGRAHFETETTRFTILDAPGHKS----YVPNM--ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK--T 218 (514)
Q Consensus 147 iT~~~~~~~~~~~~~~i~liDtPGh~~----f~~~~--~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~--~ 218 (514)
+ ..+....+.+.|+||+|... .+.++ +.....+|=++|||||..| |.......+- .
T Consensus 175 l------~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G----------QdA~~~A~aF~e~ 238 (451)
T COG0541 175 L------EKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG----------QDAVNTAKAFNEA 238 (451)
T ss_pred H------HHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc----------hHHHHHHHHHhhh
Confidence 1 11233457899999999433 33333 2234589999999999987 6554433332 2
Q ss_pred cCCCeEEEEEeeccC
Q 010278 219 LGVTKLLLVVNKMDD 233 (514)
Q Consensus 219 ~~vp~~IvviNK~D~ 233 (514)
+++. =|+++|+|-
T Consensus 239 l~it--GvIlTKlDG 251 (451)
T COG0541 239 LGIT--GVILTKLDG 251 (451)
T ss_pred cCCc--eEEEEcccC
Confidence 3455 368999996
No 437
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.0075 Score=63.58 Aligned_cols=179 Identities=17% Similarity=0.225 Sum_probs=110.3
Q ss_pred EeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHH
Q 010278 166 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDE 245 (514)
Q Consensus 166 iDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~ 245 (514)
-||-|.-.-+...+..+...++-+-|+.+.-| +-|+....++...+ . +|+..|= .-....
T Consensus 313 aDt~GSlEAL~~~L~~~~~~~v~~~i~~~~VG---------~ite~DV~lA~as~-a-vIigFnV------~~~~~a--- 372 (509)
T COG0532 313 ADTQGSLEALKGSLKKLGVDEVKVRIIHAGVG---------GITESDVMLAAASD-A-VIIGFNV------RVDPEA--- 372 (509)
T ss_pred EcccchHHHHHHHHHhcCCCceEEEEEEeecC---------CCChhhHHHHHhcC-C-EEEEEec------CCCHHH---
Confidence 57777766666666666777777777777666 35666666666666 3 5666661 111111
Q ss_pred HHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEEEEEEE--cc
Q 010278 246 IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KD 323 (514)
Q Consensus 246 i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~i~~~~--~~ 323 (514)
+.+.+..+ +.+..-+ =|.++.+. +..++..+..|.....-.-..-+..+| ++
T Consensus 373 -----~~~ae~~~------V~I~~~~-----iIY~lied----------~~~~~~g~l~p~~~e~~~g~~~~r~v~~~~k 426 (509)
T COG0532 373 -----RRLAESEG------VKIRYYD-----VIYKLIED----------VEAAMKGMLEPEKKERVIGLAEVRAVFKLPK 426 (509)
T ss_pred -----HHHHHhcC------CcEEEcc-----hHHHHHHH----------HHHHHHhccchhhhhhcccceEEEEEEEcCC
Confidence 11122222 2222111 11111111 223333332232222111223334444 46
Q ss_pred CCeEEEEEEeeeeeecCCEEEEecCC-c--EEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEc
Q 010278 324 MGTVVMGKVESGSVREGDSLLVMPNK-A--QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 392 (514)
Q Consensus 324 ~G~v~~g~v~sG~l~~gd~v~~~p~~-~--~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~ 392 (514)
.|.++.++|..|.++.|..+.+...+ . ..+|.||+++++++.++.+|+-|++.+.| ..+++.||+|-
T Consensus 427 ~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~ecgI~i~~--~~di~~gD~le 496 (509)
T COG0532 427 VGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQECGIAIEN--YRDIKEGDILE 496 (509)
T ss_pred CCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHhccCcEEEEEecC--cccCCCCCEEE
Confidence 89999999999999999999998544 2 47999999999999999999999999997 56789999884
No 438
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.0017 Score=65.48 Aligned_cols=68 Identities=25% Similarity=0.281 Sum_probs=43.9
Q ss_pred EEeCCeEEEEEeCCCCcc----hHHHHHHh--hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe
Q 010278 156 FETETTRFTILDAPGHKS----YVPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 229 (514)
Q Consensus 156 ~~~~~~~i~liDtPGh~~----f~~~~~~g--~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviN 229 (514)
|..+++.+.|+||.|... ...+|+.- +-.+|-+|+|+||+-| |..+....+-...+.---|+||
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG----------Qaae~Qa~aFk~~vdvg~vIlT 248 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG----------QAAEAQARAFKETVDVGAVILT 248 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc----------HhHHHHHHHHHHhhccceEEEE
Confidence 444678899999999322 23444332 3469999999999987 6655543333322221246799
Q ss_pred eccC
Q 010278 230 KMDD 233 (514)
Q Consensus 230 K~D~ 233 (514)
|+|-
T Consensus 249 KlDG 252 (483)
T KOG0780|consen 249 KLDG 252 (483)
T ss_pred eccc
Confidence 9996
No 439
>PRK00098 GTPase RsgA; Reviewed
Probab=97.30 E-value=0.00021 Score=71.86 Aligned_cols=24 Identities=25% Similarity=0.123 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
...++++|++|+|||||+|+|+..
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999643
No 440
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.25 E-value=0.00085 Score=62.13 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=36.6
Q ss_pred CeEEEEEeCCCCcchHHHH-----HHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 160 TTRFTILDAPGHKSYVPNM-----ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~-----~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
...+.||-+.|..+-...+ .......+.+|.||||..-.. ...... .+..+..... +|++||+|+
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~-------~~~~~~-~~~~Qi~~AD-vIvlnK~D~ 153 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDE-------LENIPE-LLREQIAFAD-VIVLNKIDL 153 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGG-------HTTHCH-HHHHHHCT-S-EEEEE-GGG
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccc-------cccchh-hhhhcchhcC-EEEEecccc
Confidence 3567889999965543332 222335799999999965211 122222 2234444443 479999999
No 441
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.0035 Score=62.23 Aligned_cols=143 Identities=17% Similarity=0.210 Sum_probs=78.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhc---cCchhhhhcccEEEeeeEEE
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIM---DTNEEERIKGKTVEVGRAHF 156 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~---d~~~~e~~~giT~~~~~~~~ 156 (514)
......|+++|.-|+|||||++.|... .. ++.++ .++. .....|+.+..|+.+...
T Consensus 185 ~tdf~VIgvlG~QgsGKStllslLaan--s~--~~dyr---------------~yvFRpvS~Ea~E~~~~qt~~Id~~-- 243 (491)
T KOG4181|consen 185 TTDFTVIGVLGGQGSGKSTLLSLLAAN--SL--DYDYR---------------QYVFRPVSPEADECIFAQTHKIDPN-- 243 (491)
T ss_pred CCCeeEEEeecCCCccHHHHHHHHhcc--Ch--HHhhH---------------HHhcccCChhhhhhhccceeccccc--
Confidence 345678899999999999999987332 11 11111 1111 111133334444443321
Q ss_pred EeCCeEE-----------------EEEeCCCCcch-----------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcc
Q 010278 157 ETETTRF-----------------TILDAPGHKSY-----------VPNMISGASQADIGVLVISARKGEFETGFEKGGQ 208 (514)
Q Consensus 157 ~~~~~~i-----------------~liDtPGh~~f-----------~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~q 208 (514)
.....+ .+.|+|-...| +..+..-++.|+++|+|+|.-.. .|
T Consensus 244 -i~q~~i~fldtqpl~sfsi~e~~i~~d~p~~~~~~~d~~~~~~~sL~~~AfLl~VcHivivV~d~~~d---------~~ 313 (491)
T KOG4181|consen 244 -IGQKSILFLDTQPLQSFSIRERHILLDTPPLMPVGKDSDHQDLYSLGTMAFLLSVCHIVIVVIDGLAD---------EQ 313 (491)
T ss_pred -cccceEEeeccccccchHHHhhhhccCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhEEEEEecchhH---------HH
Confidence 122233 34455542111 45555556899999999996543 35
Q ss_pred hHHHHHHHHHcC----------------CCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhh
Q 010278 209 TREHVMLAKTLG----------------VTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLK 255 (514)
Q Consensus 209 t~e~l~~~~~~~----------------vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~ 255 (514)
..+.|+.+..+. -|++|++=||.-+ .|+.....+.+-..+..+++
T Consensus 314 lir~L~~Ae~~rP~laifrh~~~~~r~~~p~lVFv~~KA~r--iDf~pr~rerl~~~~~~l~~ 374 (491)
T KOG4181|consen 314 LIRLLNAAERLRPTLAIFRHCKGYVRDHMPQLVFVRAKAHR--IDFEPRQRERLDKKLAYLYG 374 (491)
T ss_pred HHHHHHHHHhhCcccCccccccccccccCcceEEEeccccc--cccChHHHHHHHHHHHHHhc
Confidence 555555554432 4678999999877 55554444444444444443
No 442
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.19 E-value=0.00081 Score=62.37 Aligned_cols=65 Identities=23% Similarity=0.293 Sum_probs=42.2
Q ss_pred eEEEEEeCCC------CcchHHHHHHhhhhc---CEEEEEEECCCCcccccccCCcchHH------HHHHHHHcCCCeEE
Q 010278 161 TRFTILDAPG------HKSYVPNMISGASQA---DIGVLVISARKGEFETGFEKGGQTRE------HVMLAKTLGVTKLL 225 (514)
Q Consensus 161 ~~i~liDtPG------h~~f~~~~~~g~~~~---D~ailVVda~~g~~e~~~~~~~qt~e------~l~~~~~~~vp~~I 225 (514)
-.+.++|+|| |...+++.++.+.+- =++++++|+.--+ ..++. .+.....+.+|+ |
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~v--------D~~KfiSG~lsAlsAMi~lE~P~-I 168 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLV--------DSTKFISGCLSALSAMISLEVPH-I 168 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhh--------hHHHHHHHHHHHHHHHHHhcCcc-h
Confidence 4588999999 444577777776542 2477788875321 12332 334445568994 6
Q ss_pred EEEeeccCC
Q 010278 226 LVVNKMDDH 234 (514)
Q Consensus 226 vviNK~D~~ 234 (514)
=+++|||+.
T Consensus 169 NvlsKMDLl 177 (273)
T KOG1534|consen 169 NVLSKMDLL 177 (273)
T ss_pred hhhhHHHHh
Confidence 799999984
No 443
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.14 E-value=0.00096 Score=66.20 Aligned_cols=85 Identities=19% Similarity=0.194 Sum_probs=53.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe--
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-- 158 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~-- 158 (514)
-.++.++|||-||+|||||+|+|.. .... .+...=.||+......+.
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~--~~a~-----------------------------~~NfPF~TIdPn~a~V~v~d 66 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTK--SKAG-----------------------------AANFPFCTIDPNEARVEVPD 66 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhc--CCCC-----------------------------ccCCCcceeccccceeecCc
Confidence 3668999999999999999999932 1111 011111233332222111
Q ss_pred ------------C---CeEEEEEeCCCCc-------chHHHHHHhhhhcCEEEEEEECCC
Q 010278 159 ------------E---TTRFTILDAPGHK-------SYVPNMISGASQADIGVLVISARK 196 (514)
Q Consensus 159 ------------~---~~~i~liDtPGh~-------~f~~~~~~g~~~~D~ailVVda~~ 196 (514)
. .-.+++.|.+|.. -.-+..++-++.+|.++-||++..
T Consensus 67 ~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 67 SRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred hHHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 1 1348999999942 234555666789999999999865
No 444
>PRK13796 GTPase YqeH; Provisional
Probab=97.12 E-value=0.0013 Score=68.12 Aligned_cols=94 Identities=18% Similarity=0.195 Sum_probs=58.4
Q ss_pred chHHHHHHhhhhcC-EEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhh
Q 010278 173 SYVPNMISGASQAD-IGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMT 251 (514)
Q Consensus 173 ~f~~~~~~g~~~~D-~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~ 251 (514)
+|. .++..+...| .+++|||+.+-. ......+.... .+.| +++|+||+|+...+ ...+++.+.+.
T Consensus 58 ~~~-~~l~~i~~~~~lIv~VVD~~D~~--------~s~~~~L~~~~-~~kp-viLViNK~DLl~~~---~~~~~i~~~l~ 123 (365)
T PRK13796 58 DFL-KLLNGIGDSDALVVNVVDIFDFN--------GSWIPGLHRFV-GNNP-VLLVGNKADLLPKS---VKKNKVKNWLR 123 (365)
T ss_pred HHH-HHHHhhcccCcEEEEEEECccCC--------CchhHHHHHHh-CCCC-EEEEEEchhhCCCc---cCHHHHHHHHH
Confidence 444 4667777666 999999998632 22233332222 2556 88999999994321 11223334444
Q ss_pred hhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 252 PFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 252 ~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.+.+..|+. ...++.+||++|.|+.++++
T Consensus 124 ~~~k~~g~~---~~~v~~vSAk~g~gI~eL~~ 152 (365)
T PRK13796 124 QEAKELGLR---PVDVVLISAQKGHGIDELLE 152 (365)
T ss_pred HHHHhcCCC---cCcEEEEECCCCCCHHHHHH
Confidence 555666653 12689999999999988654
No 445
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.11 E-value=0.006 Score=61.80 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=22.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
+.+...+.|--|||||||+++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5678899999999999999999854
No 446
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.0032 Score=70.12 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
...|+++|..|+||||++..|..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 45889999999999999999864
No 447
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.06 E-value=0.00024 Score=75.31 Aligned_cols=66 Identities=15% Similarity=0.201 Sum_probs=39.3
Q ss_pred eCCeEEEEEeCCCCcchHHHH---HHhh---hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeec
Q 010278 158 TETTRFTILDAPGHKSYVPNM---ISGA---SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 231 (514)
Q Consensus 158 ~~~~~i~liDtPGh~~f~~~~---~~g~---~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~ 231 (514)
..++.+.+|||+|.......+ +..+ ..+.-.+||+|+..+. ....+.+......++.. +++||+
T Consensus 332 L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--------~~l~~i~~~f~~~~~~g--~IlTKl 401 (484)
T PRK06995 332 LRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--------DTLNEVVQAYRGPGLAG--CILTKL 401 (484)
T ss_pred ccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--------HHHHHHHHHhccCCCCE--EEEeCC
Confidence 356779999999954332211 1111 1234479999998652 12333444455556663 468999
Q ss_pred cC
Q 010278 232 DD 233 (514)
Q Consensus 232 D~ 233 (514)
|.
T Consensus 402 De 403 (484)
T PRK06995 402 DE 403 (484)
T ss_pred CC
Confidence 97
No 448
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.04 E-value=0.0092 Score=62.54 Aligned_cols=110 Identities=21% Similarity=0.222 Sum_probs=61.9
Q ss_pred hcccEEEeeeEEEEeCC---eEEEEEeCCCCcc-------------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCc
Q 010278 144 IKGKTVEVGRAHFETET---TRFTILDAPGHKS-------------YVPNMISGASQADIGVLVISARKGEFETGFEKGG 207 (514)
Q Consensus 144 ~~giT~~~~~~~~~~~~---~~i~liDtPGh~~-------------f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~ 207 (514)
..|.|+..-.+.+...+ .++.|+|.||... .....-..+..++++||+|- +|...+.-+
T Consensus 392 r~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ--DGSVDAERS--- 466 (980)
T KOG0447|consen 392 KEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ--DGSVDAERS--- 466 (980)
T ss_pred cCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec--cCCcchhhh---
Confidence 46777777667776655 5689999999422 23333444678999999974 232111100
Q ss_pred chHHHHHHHHHcCCCeEEEEEeeccCCCCC-chHHHHHHHHhhhhhhhhhccC
Q 010278 208 QTREHVMLAKTLGVTKLLLVVNKMDDHTVN-WSKERYDEIESKMTPFLKASGY 259 (514)
Q Consensus 208 qt~e~l~~~~~~~vp~~IvviNK~D~~~~~-~~~~~~~~i~~~l~~~l~~~g~ 259 (514)
.--.....+.-+|.. -|+|++|+|+...+ -+..+++.|.+--.--++.+||
T Consensus 467 nVTDLVsq~DP~GrR-TIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALGY 518 (980)
T KOG0447|consen 467 IVTDLVSQMDPHGRR-TIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALGY 518 (980)
T ss_pred hHHHHHHhcCCCCCe-eEEEEeecchhhhccCCHHHHHHHHhcCccchhhcce
Confidence 111122333345765 78999999995432 1345555554432222345554
No 449
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.01 E-value=0.0025 Score=62.99 Aligned_cols=82 Identities=20% Similarity=0.276 Sum_probs=60.3
Q ss_pred hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCccc
Q 010278 183 SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVK 262 (514)
Q Consensus 183 ~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~ 262 (514)
...|-+|+|+.+..+.|. ..+..+.|-++...|+. .|+++||+|+ .+.. .... ++.......+||
T Consensus 78 ~n~d~~iiIvs~~~P~~~-----~~~ldR~Lv~ae~~gi~-pvIvlnK~DL--~~~~--~~~~--~~~~~~y~~~gy--- 142 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFN-----TNLLDRYLVLAEAGGIE-PVIVLNKIDL--LDDE--EAAV--KELLREYEDIGY--- 142 (301)
T ss_pred cccceEEEEEeccCCCCC-----HHHHHHHHHHHHHcCCc-EEEEEEcccc--Ccch--HHHH--HHHHHHHHhCCe---
Confidence 457899999999998762 34667778888889998 6678999999 4321 2222 445555666665
Q ss_pred CCeeEEeecccccccccccc
Q 010278 263 KDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 263 ~~~~iipiSa~~G~gi~~l~ 282 (514)
+++.+|+++++|+.++.
T Consensus 143 ---~v~~~s~~~~~~~~~l~ 159 (301)
T COG1162 143 ---PVLFVSAKNGDGLEELA 159 (301)
T ss_pred ---eEEEecCcCcccHHHHH
Confidence 78999999999998753
No 450
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.98 E-value=0.0037 Score=57.71 Aligned_cols=65 Identities=25% Similarity=0.360 Sum_probs=50.2
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
..+.+.|+|||+... ......+..+|.+|+|+.+..... ....+.+..++..+.+ +.+++||+|.
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~-------~~~~~~~~~l~~~~~~-~~vV~N~~~~ 155 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGL-------HDLERAVELVRHFGIP-VGVVINKYDL 155 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccH-------HHHHHHHHHHHHcCCC-EEEEEeCCCC
Confidence 578899999997533 244556788999999999886532 2566777788888988 7789999997
No 451
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.85 E-value=0.0041 Score=63.72 Aligned_cols=87 Identities=16% Similarity=0.211 Sum_probs=60.8
Q ss_pred hcccEEEeeeEEEEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCc---ccccccCCcchHHHHHHHHH--
Q 010278 144 IKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FETGFEKGGQTREHVMLAKT-- 218 (514)
Q Consensus 144 ~~giT~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~---~e~~~~~~~qt~e~l~~~~~-- 218 (514)
.+-.|.......|...+..+.++|.+|++.+.+.+......++++|+|||.++-. .|..- .....+.+.+...
T Consensus 167 ~r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~--~nrl~esl~~f~~l~ 244 (342)
T smart00275 167 SRVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDES--TNRMQESLNLFESIC 244 (342)
T ss_pred eeCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCc--chHHHHHHHHHHHHH
Confidence 3344555556668888999999999999999999999999999999999988521 11000 0122233333222
Q ss_pred -----cCCCeEEEEEeeccC
Q 010278 219 -----LGVTKLLLVVNKMDD 233 (514)
Q Consensus 219 -----~~vp~~IvviNK~D~ 233 (514)
.++| +++++||.|+
T Consensus 245 ~~~~~~~~p-iil~~NK~D~ 263 (342)
T smart00275 245 NSRWFANTS-IILFLNKIDL 263 (342)
T ss_pred cCccccCCc-EEEEEecHHh
Confidence 2577 9999999997
No 452
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.85 E-value=0.0027 Score=64.38 Aligned_cols=86 Identities=20% Similarity=0.301 Sum_probs=60.6
Q ss_pred cccEEEeeeEEEEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCc---ccccccCCcchHHHHHHHHH---
Q 010278 145 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FETGFEKGGQTREHVMLAKT--- 218 (514)
Q Consensus 145 ~giT~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~---~e~~~~~~~qt~e~l~~~~~--- 218 (514)
+..|.......|..++..+.++|++|++...+.+......++++|+|||.++-. .|... .....+.+.+...
T Consensus 145 r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~--~nrl~esl~~f~~i~~ 222 (317)
T cd00066 145 RVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDES--TNRMQESLNLFDSICN 222 (317)
T ss_pred ecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCc--chHHHHHHHHHHHHHh
Confidence 334555555667888899999999999999999999889999999999987621 00000 0123333333332
Q ss_pred ----cCCCeEEEEEeeccC
Q 010278 219 ----LGVTKLLLVVNKMDD 233 (514)
Q Consensus 219 ----~~vp~~IvviNK~D~ 233 (514)
.++| +++++||.|+
T Consensus 223 ~~~~~~~p-ill~~NK~D~ 240 (317)
T cd00066 223 SRWFANTS-IILFLNKKDL 240 (317)
T ss_pred CccccCCC-EEEEccChHH
Confidence 3677 9999999997
No 453
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=96.84 E-value=0.00083 Score=67.91 Aligned_cols=199 Identities=6% Similarity=-0.130 Sum_probs=167.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
-+-..+.-+-++.+.++++++...-+-.+....+..+..+....++..-||++.|..+....++.-+++...-...+..-
T Consensus 80 vn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~~f 159 (501)
T KOG0459|consen 80 VNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENKRF 159 (501)
T ss_pred ceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecceeE
Confidence 34456666777888888887765555556666677778888889999999999999999999998888888887777776
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~ 239 (514)
......-+-+++..++..+..+-..++++-.....-++-||.|.+...++..+-.+.....+-.+....++++--..+|.
T Consensus 160 tiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~eRy 239 (501)
T KOG0459|consen 160 TILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERY 239 (501)
T ss_pred EeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcchhhH
Confidence 77777888899999999999999999999999999999999999999999999999999988877778899998888899
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMK 279 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~ 279 (514)
.+..+.+...|+ .+..-.++....+|+-+.|+.+..+..
T Consensus 240 ~E~~~k~~~fLr-~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 240 EECKEKLQPFLR-KLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred HHHHHHHHHHHH-HhcccCCCCceeeecccccccchhhcc
Confidence 999999988887 777777776667899999988876654
No 454
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=96.80 E-value=0.025 Score=62.08 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=60.3
Q ss_pred EEEc-cCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCc-ccceeeeEEcc
Q 010278 319 DKFK-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEE-EDILSGFVLSS 393 (514)
Q Consensus 319 ~~~~-~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~-~~i~~G~vl~~ 393 (514)
.+|+ ..+.++.++|..|.|+.|..|.-..+..-.+|.||+++++++++|..|+-|++.+.+... .+++.||+|..
T Consensus 473 ~vf~~~~~~i~G~~V~~G~i~~~~~v~r~~~~~iG~i~slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~l~~ 549 (590)
T TIGR00491 473 LVFRQSKPAIVGVEVLTGVIRQGYPLMKDDGETVGTVRSMQDKGENVKSASAGQEVAIAIKDVVYGRTIHEGDTLYV 549 (590)
T ss_pred eeeeCCCCeEEEEEEecCEEecCCeEEecCCEEEEEEchhcccCccccEECCCCEEEEEEeCccccCCCCCCCEEEE
Confidence 4663 347889999999999999987432233457899999999999999999999999987422 57899999865
No 455
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.80 E-value=0.00092 Score=67.63 Aligned_cols=59 Identities=22% Similarity=0.313 Sum_probs=44.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
-++.++++|+|-||+||||++|.|..... +......|+|...-..++
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~------------------------------C~vg~~pGvT~smqeV~L--- 295 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKA------------------------------CNVGNVPGVTRSMQEVKL--- 295 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhcc------------------------------ccCCCCccchhhhhheec---
Confidence 36889999999999999999999954322 123444778776655544
Q ss_pred CeEEEEEeCCCC
Q 010278 160 TTRFTILDAPGH 171 (514)
Q Consensus 160 ~~~i~liDtPGh 171 (514)
+..|.|+|.||.
T Consensus 296 dk~i~llDsPgi 307 (435)
T KOG2484|consen 296 DKKIRLLDSPGI 307 (435)
T ss_pred cCCceeccCCce
Confidence 578999999995
No 456
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.76 E-value=0.0088 Score=49.77 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=27.3
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG 197 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g 197 (514)
+.+.|+|+|+..... ....+..+|.+|+++++...
T Consensus 40 ~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 40 YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCHH
Confidence 779999999975433 33567889999999998764
No 457
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.76 E-value=0.012 Score=47.47 Aligned_cols=70 Identities=19% Similarity=0.315 Sum_probs=47.5
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEEE
Q 010278 86 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTI 165 (514)
Q Consensus 86 v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~l 165 (514)
+++.|..|+||||+...|...... .|..+-. +. .+.+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----------------------------------~g~~v~~----~~----d~ii 38 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----------------------------------RGKRVLL----ID----DYVL 38 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----------------------------------CCCeEEE----EC----CEEE
Confidence 678899999999999988543211 2222111 11 7899
Q ss_pred EeCCCCcchHHH-HHHhhhhcCEEEEEEECCCCc
Q 010278 166 LDAPGHKSYVPN-MISGASQADIGVLVISARKGE 198 (514)
Q Consensus 166 iDtPGh~~f~~~-~~~g~~~~D~ailVVda~~g~ 198 (514)
+|+|+....... .......+|.++++++.....
T Consensus 39 vD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~ 72 (99)
T cd01983 39 IDTPPGLGLLVLLCLLALLAADLVIIVTTPEALA 72 (99)
T ss_pred EeCCCCccchhhhhhhhhhhCCEEEEecCCchhh
Confidence 999997554432 244567899999999988653
No 458
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.71 E-value=0.0086 Score=62.60 Aligned_cols=31 Identities=19% Similarity=0.129 Sum_probs=26.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCc
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQV 110 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i 110 (514)
..-..+|+|+|+.++|||||+++|....|..
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 3456899999999999999999998776654
No 459
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=96.59 E-value=0.00019 Score=65.01 Aligned_cols=155 Identities=16% Similarity=0.189 Sum_probs=95.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe--
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT-- 161 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~-- 161 (514)
..+-|+|.-++|||+++.+-+...-. +++. .-|-++....-+.|+.+
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs----------------------~~yR---------AtIgvdfalkVl~wdd~t~ 74 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFS----------------------YHYR---------ATIGVDFALKVLQWDDKTI 74 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHH----------------------HHHH---------HHHhHHHHHHHhccChHHH
Confidence 46789999999999999876543321 1110 00111111112334443
Q ss_pred -EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc----CCCeEEEEEeeccCCCC
Q 010278 162 -RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 162 -~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~----~vp~~IvviNK~D~~~~ 236 (514)
++.|+|..|+++|-.++--..+.|.++.+|+|.+....+ +.....++.+.--..+ -+| +|...||+|. .
T Consensus 75 vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tf---e~~skwkqdldsk~qLpng~Pv~-~vllankCd~--e 148 (229)
T KOG4423|consen 75 VRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTF---EPVSKWKQDLDSKLQLPNGTPVP-CVLLANKCDQ--E 148 (229)
T ss_pred HHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccc---cHHHHHHHhccCcccCCCCCcch-heeccchhcc--C
Confidence 568999999999877665566789999999998875431 1101112211111111 255 7788899998 3
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.| ...+--..+..+.++.||. -+..+|++...|+.+...
T Consensus 149 ~~---a~~~~~~~~d~f~kengf~-----gwtets~Kenkni~Ea~r 187 (229)
T KOG4423|consen 149 KS---AKNEATRQFDNFKKENGFE-----GWTETSAKENKNIPEAQR 187 (229)
T ss_pred hH---hhhhhHHHHHHHHhccCcc-----ceeeeccccccChhHHHH
Confidence 32 3334445666777888875 688999999999988543
No 460
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.48 E-value=0.0024 Score=66.64 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHH
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
.+..++|++||-||+||||+||+|.+
T Consensus 311 ~~~~vtVG~VGYPNVGKSSTINaLvG 336 (562)
T KOG1424|consen 311 YKDVVTVGFVGYPNVGKSSTINALVG 336 (562)
T ss_pred CCceeEEEeecCCCCchhHHHHHHhc
Confidence 34479999999999999999999954
No 461
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.48 E-value=0.018 Score=59.01 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
+.+...+.|--|||||||+++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4567889999999999999999854
No 462
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.47 E-value=0.0088 Score=56.60 Aligned_cols=75 Identities=11% Similarity=0.152 Sum_probs=40.3
Q ss_pred CCeEEEEEeCCCCcc------hHHHHHHhhhhcCEEEEEEECCCCccccccc-CCcchHHHHHHHHHcCCCeEEEEEeec
Q 010278 159 ETTRFTILDAPGHKS------YVPNMISGASQADIGVLVISARKGEFETGFE-KGGQTREHVMLAKTLGVTKLLLVVNKM 231 (514)
Q Consensus 159 ~~~~i~liDtPGh~~------f~~~~~~g~~~~D~ailVVda~~g~~e~~~~-~~~qt~e~l~~~~~~~vp~~IvviNK~ 231 (514)
...++.++|+||+-. -+...++-+..-|+-+.+|.-.+..+=+.-. .-....-.+.-+..+..|| |=|+.|+
T Consensus 95 ~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melph-VNvlSK~ 173 (290)
T KOG1533|consen 95 LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPH-VNVLSKA 173 (290)
T ss_pred ccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccc-hhhhhHh
Confidence 356799999999543 3666666666666555544432221100000 0011122233344467886 4689999
Q ss_pred cCC
Q 010278 232 DDH 234 (514)
Q Consensus 232 D~~ 234 (514)
|+.
T Consensus 174 Dl~ 176 (290)
T KOG1533|consen 174 DLL 176 (290)
T ss_pred HHH
Confidence 983
No 463
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.46 E-value=0.014 Score=59.02 Aligned_cols=92 Identities=17% Similarity=0.162 Sum_probs=50.2
Q ss_pred eEEEEEeCCCCcchHHHHH--------HhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010278 161 TRFTILDAPGHKSYVPNMI--------SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 232 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~--------~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D 232 (514)
....+|-|-|...-.+-.. +..-.-|.+|-||||.+... ......-..-.+.... =++++||.|
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~-------~~~~~~~~~~~Qia~A-D~ivlNK~D 156 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLE-------GLDAIAELAEDQLAFA-DVIVLNKTD 156 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhh-------hHHHHHHHHHHHHHhC-cEEEEeccc
Confidence 4578999999655422222 22234688999999987531 1110011112223333 257999999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISG 272 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa 272 (514)
+ ++ .+.. +.++..+.+++ +..+++.+|.
T Consensus 157 l--v~--~~~l----~~l~~~l~~ln----p~A~i~~~~~ 184 (323)
T COG0523 157 L--VD--AEEL----EALEARLRKLN----PRARIIETSY 184 (323)
T ss_pred C--CC--HHHH----HHHHHHHHHhC----CCCeEEEccc
Confidence 9 43 1223 33333444443 3578888876
No 464
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.36 E-value=0.0097 Score=43.63 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=25.6
Q ss_pred HHHhh-hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-CCCeEEEEEeecc
Q 010278 178 MISGA-SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMD 232 (514)
Q Consensus 178 ~~~g~-~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~-~vp~~IvviNK~D 232 (514)
.+.++ ..++++++++|.++.. |++++.|..-.-.+-..+ +.| +++|+||+|
T Consensus 6 ai~AL~hL~~~ilfi~D~Se~C---Gysie~Q~~L~~~ik~~F~~~P-~i~V~nK~D 58 (58)
T PF06858_consen 6 AITALAHLADAILFIIDPSEQC---GYSIEEQLSLFKEIKPLFPNKP-VIVVLNKID 58 (58)
T ss_dssp HHHGGGGT-SEEEEEE-TT-TT---SS-HHHHHHHHHHHHHHTTTS--EEEEE--TT
T ss_pred HHHHHHhhcceEEEEEcCCCCC---CCCHHHHHHHHHHHHHHcCCCC-EEEEEeccC
Confidence 34444 4789999999998752 333222322222222233 677 999999998
No 465
>PRK13695 putative NTPase; Provisional
Probab=96.29 E-value=0.0072 Score=55.58 Aligned_cols=56 Identities=9% Similarity=0.066 Sum_probs=34.3
Q ss_pred eCCCCcchHHHHHH-hhhhcCEEEEEEE---CCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010278 167 DAPGHKSYVPNMIS-GASQADIGVLVIS---ARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 232 (514)
Q Consensus 167 DtPGh~~f~~~~~~-g~~~~D~ailVVd---a~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D 232 (514)
|.-|.+.+...... .+..+|+ +++| ..+. ...+..+.+..+...+.+ +|+++||..
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~--lllDE~~~~e~-------~~~~~~~~l~~~~~~~~~-~i~v~h~~~ 137 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADV--IIIDEIGKMEL-------KSPKFVKAVEEVLDSEKP-VIATLHRRS 137 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCE--EEEECCCcchh-------hhHHHHHHHHHHHhCCCe-EEEEECchh
Confidence 44344444433333 2346776 7899 4333 224667777777778888 999999854
No 466
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.28 E-value=0.013 Score=53.75 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=22.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
++.+.++|+|..|||||||+.+|+..
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 45678999999999999999999643
No 467
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.13 E-value=0.1 Score=54.00 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=25.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhC
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
....-+-|+++|+|-+||||++.++.....
T Consensus 13 RT~GdIYiGVVGPVRTGKSTFIKRFMel~V 42 (492)
T PF09547_consen 13 RTGGDIYIGVVGPVRTGKSTFIKRFMELLV 42 (492)
T ss_pred hcCCceEEEeecCcccCchhHHHHHHHHhc
Confidence 344568999999999999999999976654
No 468
>PRK04004 translation initiation factor IF-2; Validated
Probab=96.11 E-value=0.12 Score=57.01 Aligned_cols=75 Identities=21% Similarity=0.257 Sum_probs=58.5
Q ss_pred EEEc-cCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCc-ccceeeeEEcc
Q 010278 319 DKFK-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEE-EDILSGFVLSS 393 (514)
Q Consensus 319 ~~~~-~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~-~~i~~G~vl~~ 393 (514)
.+|+ ..+.++.++|..|.|+.|..|.-..+....+|.||++++++|+++..|+-|++.+.+... .++..||+|-.
T Consensus 475 ~vf~~~~~~IaGc~V~~G~i~~~~~v~r~~g~~iG~i~Slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~i~~ 551 (586)
T PRK04004 475 YVFRQSDPAIVGVEVLGGTIKPGVPLIKEDGKRVGTIKQIQDQGENVKEAKAGMEVAISIDGPTVGRQIKEGDILYV 551 (586)
T ss_pred eeEecCCCeEEEEEEEeCEEecCCEEEEECCEEEEEEehhhccCCcccEeCCCCEEEEEEecccccCCCCCCCEEEE
Confidence 5663 347888899999999999985431233457899999999999999999999999986521 46888888743
No 469
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.06 E-value=0.018 Score=61.18 Aligned_cols=146 Identities=16% Similarity=0.173 Sum_probs=76.7
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEE
Q 010278 78 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 157 (514)
Q Consensus 78 ~~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~ 157 (514)
...++...+-++|..++|||.|+..+++. .+++.. .+ ......+++.....
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr--~~~~~~----------~~---------------~~~~~~avn~v~~~-- 470 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGR--SMSDNN----------TG---------------TTKPRYAVNSVEVK-- 470 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhcc--cccccc----------cc---------------CCCCceeeeeeeec--
Confidence 34566788999999999999999988532 111100 00 00122222222221
Q ss_pred eCCeEEEEEeCCCC-cchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-cCCCeEEEEEeeccCCC
Q 010278 158 TETTRFTILDAPGH-KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 158 ~~~~~i~liDtPGh-~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~-~~vp~~IvviNK~D~~~ 235 (514)
-..+.+.|-|.+-. .+++. ..-..||+++++.|.+.... |+ ...+.+..-.. .++| +++|..|.|+..
T Consensus 471 g~~k~LiL~ei~~~~~~~l~---~ke~~cDv~~~~YDsS~p~s---f~---~~a~v~~~~~~~~~~P-c~~va~K~dlDe 540 (625)
T KOG1707|consen 471 GQQKYLILREIGEDDQDFLT---SKEAACDVACLVYDSSNPRS---FE---YLAEVYNKYFDLYKIP-CLMVATKADLDE 540 (625)
T ss_pred cccceEEEeecCcccccccc---CccceeeeEEEecccCCchH---HH---HHHHHHHHhhhccCCc-eEEEeeccccch
Confidence 23344555555542 11111 11268999999999885421 11 12222222211 4677 899999999832
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGL 273 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~ 273 (514)
. .++..-...++..++++. +-+++|..
T Consensus 541 ~------~Q~~~iqpde~~~~~~i~-----~P~~~S~~ 567 (625)
T KOG1707|consen 541 V------PQRYSIQPDEFCRQLGLP-----PPIHISSK 567 (625)
T ss_pred h------hhccCCChHHHHHhcCCC-----CCeeeccC
Confidence 2 122222335566666664 34555654
No 470
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.05 E-value=0.045 Score=49.10 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll 104 (514)
+...+|.|.|+||+|||||+..+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~ 26 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIA 26 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHH
Confidence 346889999999999999998884
No 471
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.03 E-value=0.0026 Score=64.14 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=24.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHH
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
.++.+.|+++|-||+|||+++|.|...
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~K 330 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKK 330 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhc
Confidence 678899999999999999999999543
No 472
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.01 E-value=0.013 Score=69.66 Aligned_cols=22 Identities=23% Similarity=0.117 Sum_probs=18.4
Q ss_pred ceeEEEEEecCCCChHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQI 103 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~L 103 (514)
..+=..|+|.+++|||||+.+-
T Consensus 110 ~LPWYlviG~~gsGKtt~l~~s 131 (1169)
T TIGR03348 110 DLPWYLVIGPPGSGKTTLLQNS 131 (1169)
T ss_pred cCCCEEEECCCCCchhHHHHhC
Confidence 4477899999999999998643
No 473
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=95.99 E-value=0.063 Score=52.71 Aligned_cols=27 Identities=30% Similarity=0.246 Sum_probs=23.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHH
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
...+.+.-.|.|--|||||||+|.++.
T Consensus 53 ~~~rIPvtIITGyLGaGKtTLLn~Il~ 79 (391)
T KOG2743|consen 53 LGARIPVTIITGYLGAGKTTLLNYILT 79 (391)
T ss_pred CCCccceEEEEecccCChHHHHHHHHc
Confidence 456778888999999999999999964
No 474
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.96 E-value=0.019 Score=52.89 Aligned_cols=40 Identities=25% Similarity=0.149 Sum_probs=28.9
Q ss_pred CEEEEEEECCCCcccccccCCcchHHHHHH--HHHcCCCeEEEEEeeccC
Q 010278 186 DIGVLVISARKGEFETGFEKGGQTREHVML--AKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 186 D~ailVVda~~g~~e~~~~~~~qt~e~l~~--~~~~~vp~~IvviNK~D~ 233 (514)
|++++|+||..+.. ....+.... +...+.| +|+++||+|+
T Consensus 1 DvVl~VvDar~p~~-------~~~~~i~~~~~l~~~~kp-~IlVlNK~DL 42 (172)
T cd04178 1 DVILEVLDARDPLG-------CRCPQVEEAVLQAGGNKK-LVLVLNKIDL 42 (172)
T ss_pred CEEEEEEECCCCCC-------CCCHHHHHHHHhccCCCC-EEEEEehhhc
Confidence 89999999988642 344444444 3345667 8899999999
No 475
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.92 E-value=0.11 Score=56.64 Aligned_cols=60 Identities=20% Similarity=0.292 Sum_probs=49.5
Q ss_pred EEccCCeE-EEEEEeeeeeecCCEEEEecCC--cEEEEEEEEECCeeeeecCCCCeEEEEccC
Q 010278 320 KFKDMGTV-VMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSG 379 (514)
Q Consensus 320 ~~~~~G~v-~~g~v~sG~l~~gd~v~~~p~~--~~~~V~si~~~~~~v~~a~aG~~v~~~l~~ 379 (514)
+|..++.+ +...|..|+|+.|..|.+..-. .-.+|.||+++|++|+.|.-||-|++.|.+
T Consensus 945 ifN~RdPiv~GV~V~~GilkiGTPiCv~~r~~~~lG~v~Sie~Nh~~vd~akkGqeVaiKie~ 1007 (1064)
T KOG1144|consen 945 IFNKRDPIVLGVDVEEGILKIGTPICVPKREFIDLGRVASIENNHKPVDYAKKGQEVAIKIEA 1007 (1064)
T ss_pred hccCCCCeEEEEEeecCeeecCCceEEeccceeeeeeeeeecccCcccchhhcCCeEEEEEec
Confidence 56667766 4558999999999999874422 357999999999999999999999998764
No 476
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.82 E-value=0.025 Score=57.98 Aligned_cols=29 Identities=28% Similarity=0.172 Sum_probs=23.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
.....+|.++|++|||||||...|.....
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l 98 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLL 98 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHHh
Confidence 34668999999999999999988865443
No 477
>PRK01889 GTPase RsgA; Reviewed
Probab=95.77 E-value=0.008 Score=61.96 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
..++++|.+|+|||||++.|+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 47999999999999999999654
No 478
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.77 E-value=0.047 Score=52.93 Aligned_cols=138 Identities=19% Similarity=0.299 Sum_probs=79.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
.-=..||..+|..|-|||||++.|....-.-. ..+ -...++......+.+.-.
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~---------------p~~------------H~~~~V~L~~~TyelqEs 91 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESE---------------PST------------HTLPNVKLQANTYELQES 91 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHhccccCCC---------------CCc------------cCCCCceeecchhhhhhc
Confidence 34468999999999999999999843321100 000 001222222222222222
Q ss_pred C--eEEEEEeCCCCcc---------------------h------HHHHHHhh--hhcCEEEEEEECCCCcccccccCCcc
Q 010278 160 T--TRFTILDAPGHKS---------------------Y------VPNMISGA--SQADIGVLVISARKGEFETGFEKGGQ 208 (514)
Q Consensus 160 ~--~~i~liDtPGh~~---------------------f------~~~~~~g~--~~~D~ailVVda~~g~~e~~~~~~~q 208 (514)
+ .+++++||.|.-+ | ++.++... +..+++++.|..+. .
T Consensus 92 nvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-----------H 160 (406)
T KOG3859|consen 92 NVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-----------H 160 (406)
T ss_pred CeeEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-----------c
Confidence 2 4689999999422 2 22222222 35688999998763 3
Q ss_pred hHHHHHHHH--Hc--CCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCc
Q 010278 209 TREHVMLAK--TL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 260 (514)
Q Consensus 209 t~e~l~~~~--~~--~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~ 260 (514)
....+.++. .+ ++. +|-+|-|.|. . ++..+...+..+..-|.+-|..
T Consensus 161 ~LKslDLvtmk~LdskVN-IIPvIAKaDt--i--sK~eL~~FK~kimsEL~sngv~ 211 (406)
T KOG3859|consen 161 SLKSLDLVTMKKLDSKVN-IIPVIAKADT--I--SKEELKRFKIKIMSELVSNGVQ 211 (406)
T ss_pred chhHHHHHHHHHHhhhhh-hHHHHHHhhh--h--hHHHHHHHHHHHHHHHHhcCce
Confidence 333444332 22 455 7778999998 3 4667777777777777766543
No 479
>PRK14845 translation initiation factor IF-2; Provisional
Probab=95.70 E-value=0.19 Score=58.47 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=59.5
Q ss_pred EEEc-cCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCC-cccceeeeEEcc
Q 010278 319 DKFK-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIE-EEDILSGFVLSS 393 (514)
Q Consensus 319 ~~~~-~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~-~~~i~~G~vl~~ 393 (514)
.+|+ ..+.++.++|..|+|+.|..|.-..+....+|.||+.+++++++|..|+-|++.+.+.. ..++..||+|..
T Consensus 931 ~vF~~~~~~IaG~~V~~G~i~~~~~l~r~~~~~iG~i~Slk~~k~~V~ev~~G~ecgI~i~~~~~gr~~~~gD~l~~ 1007 (1049)
T PRK14845 931 CIFRRSNPAIVGVEVLEGTLRVGVTLIKEDGMKVGTVRSIKDRGENVKEAKAGKAVAIAIEGAILGRHVDEGETLYV 1007 (1049)
T ss_pred eEEeCCCCeEEEEEEeeCEEecCcEEEecCCEEEEEEchHhccCccccEeCCCCEEEEEEecccccCCCCCCCEEEE
Confidence 5673 34788999999999999987754223345789999999999999999999999998743 246888888854
No 480
>PHA00729 NTP-binding motif containing protein
Probab=95.67 E-value=0.012 Score=56.14 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=22.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHh
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
...+|.|.|.||+|||||..+|....
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999996553
No 481
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=95.39 E-value=0.044 Score=50.00 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=49.9
Q ss_pred CCeEEEEEeCCCCcchHHHHHHh--hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 159 ETTRFTILDAPGHKSYVPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g--~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
..+.+.|+|||+.-. ...... +..+|.+|+|+.+..... ..+.+.+..+...+++.+-+++|+.+.
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~-------~~~~~~~~~l~~~~~~~~gvv~N~~~~ 133 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVAL-------DDVRKAIDMFKKVNIPILGVVENMSYF 133 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhH-------HHHHHHHHHHHhcCCCeEEEEEcCCcc
Confidence 578899999999643 222222 267899999998876433 477888889999999867789999986
No 482
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.38 E-value=0.017 Score=43.41 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 010278 85 NVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
...|.|+.++|||||++++.+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998543
No 483
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.34 E-value=0.045 Score=49.65 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
..++++|..|+|||||+.+|..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999953
No 484
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.23 E-value=0.02 Score=48.93 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
.|+|.|.++|||||+...|....|
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 589999999999999999965544
No 485
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=95.09 E-value=0.068 Score=54.30 Aligned_cols=88 Identities=17% Similarity=0.258 Sum_probs=63.8
Q ss_pred hcccEEEeeeEEEEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCc--ccccccCCcchHHHHHHHHHc--
Q 010278 144 IKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE--FETGFEKGGQTREHVMLAKTL-- 219 (514)
Q Consensus 144 ~~giT~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~--~e~~~~~~~qt~e~l~~~~~~-- 219 (514)
.|-.|.-+....|..++..+.++|.+|++.-.+.++...-.++++|++|+-++-. .+.+- ......|.+.+....
T Consensus 178 ~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~-~~NRM~eS~~LF~sI~n 256 (354)
T KOG0082|consen 178 SRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDE-TTNRMHESLKLFESICN 256 (354)
T ss_pred hccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhccccc-chhHHHHHHHHHHHHhc
Confidence 4455677778889999999999999999999999999899999999999976521 11000 012233444443331
Q ss_pred -----CCCeEEEEEeeccC
Q 010278 220 -----GVTKLLLVVNKMDD 233 (514)
Q Consensus 220 -----~vp~~IvviNK~D~ 233 (514)
+.+ +|+++||+|+
T Consensus 257 ~~~F~~ts-iiLFLNK~DL 274 (354)
T KOG0082|consen 257 NKWFANTS-IILFLNKKDL 274 (354)
T ss_pred CcccccCc-EEEEeecHHH
Confidence 456 9999999998
No 486
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=0.049 Score=56.63 Aligned_cols=143 Identities=16% Similarity=0.211 Sum_probs=75.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHh------------CCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcc
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLS------------GQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKG 146 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~------------g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g 146 (514)
..+++..|++||-.|+||||-+-.+.|=. .....+.++.+..+... ++.+++..-+-=+.|
T Consensus 374 ~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~r-------l~~l~~~~v~lfekG 446 (587)
T KOG0781|consen 374 RRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVER-------LSALHGTMVELFEKG 446 (587)
T ss_pred hcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHH-------HHHhccchhHHHhhh
Confidence 45688999999999999999888775422 12223333333333322 122222111111222
Q ss_pred cEEEeeeE------EEEeCCeEEEEEeCCCCcchHHHHHHh------hhhcCEEEEEEECCCCcccccccCCcchHHHHH
Q 010278 147 KTVEVGRA------HFETETTRFTILDAPGHKSYVPNMISG------ASQADIGVLVISARKGEFETGFEKGGQTREHVM 214 (514)
Q Consensus 147 iT~~~~~~------~~~~~~~~i~liDtPGh~~f~~~~~~g------~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~ 214 (514)
.--+.+.+ +-...++.+.||||+|...--...++. +..+|.+++|=.|--|.- .-.|.++.-.
T Consensus 447 Ygkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~d-----sv~q~~~fn~ 521 (587)
T KOG0781|consen 447 YGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGND-----SVDQLKKFNR 521 (587)
T ss_pred cCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcH-----HHHHHHHHHH
Confidence 21111100 112356789999999954432333332 357999999987765521 0123333323
Q ss_pred HHHHcCCCeE--EEEEeeccC
Q 010278 215 LAKTLGVTKL--LLVVNKMDD 233 (514)
Q Consensus 215 ~~~~~~vp~~--IvviNK~D~ 233 (514)
.+.....|+. -++++|+|.
T Consensus 522 al~~~~~~r~id~~~ltk~dt 542 (587)
T KOG0781|consen 522 ALADHSTPRLIDGILLTKFDT 542 (587)
T ss_pred HHhcCCCccccceEEEEeccc
Confidence 3333333332 258999998
No 487
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=94.83 E-value=0.034 Score=59.35 Aligned_cols=77 Identities=19% Similarity=0.409 Sum_probs=49.8
Q ss_pred CCcch--HHHHHHhhhhcCEEEEEEECCC-----C------------cccccccCCcchHHHHHHHHHcCCCeEEEEEee
Q 010278 170 GHKSY--VPNMISGASQADIGVLVISARK-----G------------EFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 230 (514)
Q Consensus 170 Gh~~f--~~~~~~g~~~~D~ailVVda~~-----g------------~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK 230 (514)
|-++| ++-+..|+ .+|++++|.-... | ..++|+. ...+|+..++.+|+| ++|+|||
T Consensus 307 GaEKF~dIkcr~~gl-~P~~~VlVaTvraLK~hgg~~~~~l~~en~Eal~sGl~---NL~RHIenvr~FGvP-vVVAINK 381 (557)
T PRK13505 307 GAEKFLDIKCRKAGL-KPDAVVIVATVRALKMHGGVAKDDLKEENVEALKKGFA---NLERHIENIRKFGVP-VVVAINK 381 (557)
T ss_pred CCceeeeeecccCCC-CCCEEEEEeehHHHHHcCCCChhhccccCHHHHHHHHH---HHHHHHHHHHHcCCC-EEEEEeC
Confidence 45666 44444444 4899999985432 1 1222332 678899999999999 9999999
Q ss_pred ccCCCCCchHHHHHHHHhhhhhhhhhccC
Q 010278 231 MDDHTVNWSKERYDEIESKMTPFLKASGY 259 (514)
Q Consensus 231 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~ 259 (514)
.|.- .+ +-.+.+++++++.|+
T Consensus 382 Fd~D----Te----~Ei~~I~~~c~e~Gv 402 (557)
T PRK13505 382 FVTD----TD----AEIAALKELCEELGV 402 (557)
T ss_pred CCCC----CH----HHHHHHHHHHHHcCC
Confidence 9972 11 233455566666664
No 488
>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology. It is required for formation of the ternary complex with GTP and initiator tRNA []. ; PDB: 1S0U_A 1KK1_A 1KK0_A 1KK2_A 1KJZ_A 1KK3_A 2D74_A 2DCU_A 3P3M_A 3V11_A ....
Probab=94.74 E-value=0.46 Score=38.34 Aligned_cols=75 Identities=16% Similarity=0.297 Sum_probs=49.9
Q ss_pred eEEEEEEEEecccc-------c-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEc
Q 010278 402 TEFIAQLQILELLD-------N-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVN 473 (514)
Q Consensus 402 ~~f~a~i~~~~~~~-------~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~ 473 (514)
++++.+..+|+.+- . .+|+.|-..++++++..+.|+|.++. ++ .+++.|.
T Consensus 2 ~~l~i~~~Ll~r~vg~~~~~~kv~~i~~~E~LmlnIGsatt~G~V~~~k--------------------~d--~~~v~L~ 59 (88)
T PF09173_consen 2 TELEIEYHLLERVVGVKEKEAKVEPIKKGEVLMLNIGSATTGGVVTSVK--------------------KD--MAEVELK 59 (88)
T ss_dssp EEEEEEEEE-SSCSSSSS-CCS-----TTEEEEEEETTEEEEEEEEEEE--------------------TT--EEEEEEE
T ss_pred EEEEEEEEEehhhhCccccceecccCCCCCEEEEEEccccccEEEEEEE--------------------CC--EEEEEec
Confidence 34566666665331 1 68899999999999999999998653 12 4677889
Q ss_pred ceEEeeecccccccceEEEEe--CC--eEEEEEEE
Q 010278 474 NSICTEKFADFAQLGRFTLRT--EG--KTVAVGKV 504 (514)
Q Consensus 474 ~pi~~e~~~~~~~lgrfilr~--~g--~tva~G~I 504 (514)
+|+|.+.. .|.+|-+ ++ |.+|+|.|
T Consensus 60 ~Pvc~~~g------~rvaiSRri~~rWRLIG~G~I 88 (88)
T PF09173_consen 60 KPVCAEKG------ERVAISRRIGNRWRLIGWGII 88 (88)
T ss_dssp EEEE-STT------SEEEEEEEETTSEEEEEEEEE
T ss_pred CCeEcCcC------CeeeeehhccCeEEEEEEEeC
Confidence 99998875 3666643 33 88999986
No 489
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=94.73 E-value=0.063 Score=56.11 Aligned_cols=87 Identities=20% Similarity=0.332 Sum_probs=60.1
Q ss_pred hcccEEEeeeEEEEe-CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCc---ccccccCCcchHHHHHHHHHc
Q 010278 144 IKGKTVEVGRAHFET-ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FETGFEKGGQTREHVMLAKTL 219 (514)
Q Consensus 144 ~~giT~~~~~~~~~~-~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~---~e~~~~~~~qt~e~l~~~~~~ 219 (514)
.+..|..+....|.. .+..+.|+|+.|++.-.+.++......+++|+||+..+-. .|.. ......+.+.+....
T Consensus 218 ~r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~--~~nrl~esl~lF~~i 295 (389)
T PF00503_consen 218 CRVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDP--NTNRLHESLNLFESI 295 (389)
T ss_dssp S----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSST--TSBHHHHHHHHHHHH
T ss_pred ecCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccc--hHHHHHHHHHHHHHH
Confidence 344566666777888 8999999999999998899999999999999999965311 1100 112345555555442
Q ss_pred -------CCCeEEEEEeeccC
Q 010278 220 -------GVTKLLLVVNKMDD 233 (514)
Q Consensus 220 -------~vp~~IvviNK~D~ 233 (514)
+.+ +|+++||+|+
T Consensus 296 ~~~~~~~~~~-iil~lnK~D~ 315 (389)
T PF00503_consen 296 CNNPWFKNTP-IILFLNKIDL 315 (389)
T ss_dssp HTSGGGTTSE-EEEEEE-HHH
T ss_pred HhCcccccCc-eEEeeecHHH
Confidence 456 9999999997
No 490
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.70 E-value=0.082 Score=53.57 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
..+|.|.|.+|||||||+++|+..
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999653
No 491
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.68 E-value=0.032 Score=49.45 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
++|+|+|+.|+|||||+..|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999543
No 492
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.62 E-value=0.026 Score=43.40 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=18.0
Q ss_pred EEEEEecCCCChHHHHHHHH
Q 010278 85 NVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll 104 (514)
.|++.|.+++||||+.++|.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~ 20 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLA 20 (69)
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999984
No 493
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.62 E-value=0.068 Score=52.78 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=22.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
...+|.|.|.+||||||++++|+..
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~ 150 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEE 150 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCccccchHHHHHhhh
Confidence 4689999999999999999999643
No 494
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.59 E-value=0.028 Score=51.86 Aligned_cols=27 Identities=37% Similarity=0.410 Sum_probs=21.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhC
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
+--.++++|+.|+|||||++.++...|
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G 46 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASG 46 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCC
Confidence 345799999999999999998864433
No 495
>KOG2484 consensus GTPase [General function prediction only]
Probab=94.58 E-value=0.16 Score=51.86 Aligned_cols=63 Identities=27% Similarity=0.259 Sum_probs=42.8
Q ss_pred EEeCCCC-cchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-HHcCCCeEEEEEeeccCC
Q 010278 165 ILDAPGH-KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLGVTKLLLVVNKMDDH 234 (514)
Q Consensus 165 liDtPGh-~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~-~~~~vp~~IvviNK~D~~ 234 (514)
-.|-+++ ..|.+....-+..+|++|-|+||.++.- ....+.=... ...|-+++|+|+||+|+.
T Consensus 126 ~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlg-------tR~~~vE~~V~~~~gnKkLILVLNK~DLV 190 (435)
T KOG2484|consen 126 ALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLG-------TRCPEVEEAVLQAHGNKKLILVLNKIDLV 190 (435)
T ss_pred hccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCC-------CCChhHHHHHHhccCCceEEEEeehhccC
Confidence 3455554 3577777777889999999999999742 2222222222 244547799999999993
No 496
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.49 E-value=0.026 Score=54.29 Aligned_cols=21 Identities=33% Similarity=0.248 Sum_probs=18.7
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll 104 (514)
=-|+|+|+.|||||||++.+.
T Consensus 30 EfvsilGpSGcGKSTLLriiA 50 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIA 50 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 359999999999999999883
No 497
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.43 E-value=0.039 Score=48.50 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
.|.++|.++||||||+..|....+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 378999999999999999965554
No 498
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.41 E-value=0.059 Score=62.83 Aligned_cols=19 Identities=26% Similarity=0.130 Sum_probs=15.9
Q ss_pred eeEEEEEecCCCChHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGG 101 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~ 101 (514)
.+=-.|+|++|+||||++.
T Consensus 125 LPWy~viG~pgsGKTtal~ 143 (1188)
T COG3523 125 LPWYMVIGPPGSGKTTALL 143 (1188)
T ss_pred CCceEEecCCCCCcchHHh
Confidence 3557899999999999963
No 499
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.27 E-value=0.047 Score=51.72 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=24.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
.++...|+|+|.+|||||||+.+|.....
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567899999999999999999976543
No 500
>PRK07261 topology modulation protein; Provisional
Probab=94.25 E-value=0.041 Score=50.49 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 010278 85 NVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
+|+|+|.+|+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999988433
Done!