Query 010278
Match_columns 514
No_of_seqs 429 out of 3391
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 03:19:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010278.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010278hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j2k_7 ERF3, eukaryotic polype 100.0 9.9E-84 3.4E-88 678.4 52.0 425 79-508 13-438 (439)
2 1r5b_A Eukaryotic peptide chai 100.0 5.9E-80 2E-84 654.6 28.9 424 80-508 40-466 (467)
3 1f60_A Elongation factor EEF1A 100.0 1.3E-75 4.6E-80 619.7 43.8 423 80-510 4-442 (458)
4 3izq_1 HBS1P, elongation facto 100.0 4.3E-76 1.5E-80 641.5 36.8 424 79-508 163-610 (611)
5 3p26_A Elongation factor 1 alp 100.0 4.8E-75 1.6E-79 620.3 42.4 424 80-509 30-477 (483)
6 1jny_A EF-1-alpha, elongation 100.0 9.3E-75 3.2E-79 610.3 44.0 426 80-510 3-430 (435)
7 3mca_A HBS1, elongation factor 100.0 4.6E-75 1.6E-79 631.8 31.5 415 79-508 173-592 (592)
8 1zun_B Sulfate adenylate trans 100.0 4.8E-69 1.6E-73 566.8 43.6 407 80-505 21-433 (434)
9 1d2e_A Elongation factor TU (E 100.0 9.3E-62 3.2E-66 505.6 38.8 378 81-510 1-388 (397)
10 2c78_A Elongation factor TU-A; 100.0 2.5E-61 8.4E-66 504.0 37.3 384 80-509 8-405 (405)
11 3avx_A Elongation factor TS, e 100.0 3.7E-57 1.3E-61 506.8 36.8 380 79-511 292-680 (1289)
12 1wb1_A Translation elongation 100.0 1.6E-58 5.6E-63 491.4 16.8 370 79-509 15-395 (482)
13 2elf_A Protein translation elo 100.0 4.8E-55 1.6E-59 449.4 33.4 336 85-505 23-370 (370)
14 1kk1_A EIF2gamma; initiation o 100.0 3E-53 1E-57 443.6 38.0 343 80-505 7-409 (410)
15 1s0u_A EIF-2-gamma, translatio 100.0 1.5E-53 5.1E-58 445.4 34.9 343 80-505 5-407 (408)
16 3sjy_A Translation initiation 100.0 4.2E-50 1.4E-54 418.7 35.0 355 80-505 5-402 (403)
17 3e1y_E Eukaryotic peptide chai 100.0 2.2E-42 7.4E-47 325.8 17.6 199 309-510 3-202 (204)
18 3vqt_A RF-3, peptide chain rel 100.0 1.6E-38 5.5E-43 341.8 23.9 282 80-396 28-401 (548)
19 2ywe_A GTP-binding protein LEP 100.0 5.8E-37 2E-41 330.7 26.2 268 81-397 4-282 (600)
20 3cb4_D GTP-binding protein LEP 100.0 9E-36 3.1E-40 322.1 26.8 268 81-397 2-280 (599)
21 4fn5_A EF-G 1, elongation fact 100.0 5.2E-36 1.8E-40 332.6 20.6 278 81-397 11-406 (709)
22 3j25_A Tetracycline resistance 100.0 6.1E-38 2.1E-42 343.8 2.1 274 82-396 1-331 (638)
23 3tr5_A RF-3, peptide chain rel 100.0 1.2E-33 4.2E-38 302.3 24.1 280 81-395 11-382 (528)
24 3izy_P Translation initiation 100.0 9.8E-36 3.4E-40 317.3 5.0 255 82-397 3-261 (537)
25 1zo1_I IF2, translation initia 100.0 6.3E-35 2.2E-39 308.6 9.2 248 81-395 2-258 (501)
26 2rdo_7 EF-G, elongation factor 100.0 1.6E-32 5.6E-37 303.5 28.3 274 80-396 7-402 (704)
27 2h5e_A Peptide chain release f 100.0 7.6E-33 2.6E-37 296.5 21.9 279 81-395 11-383 (529)
28 1dar_A EF-G, elongation factor 100.0 1.2E-31 4.2E-36 296.1 28.6 275 80-397 9-395 (691)
29 1g7s_A Translation initiation 100.0 1.1E-32 3.7E-37 298.4 17.7 262 81-396 3-329 (594)
30 2xex_A Elongation factor G; GT 100.0 1E-30 3.5E-35 288.9 26.1 274 80-396 7-394 (693)
31 2dy1_A Elongation factor G; tr 100.0 8.3E-31 2.8E-35 288.5 23.9 275 81-397 7-368 (665)
32 1n0u_A EF-2, elongation factor 100.0 5.4E-28 1.8E-32 272.2 22.5 290 79-395 15-473 (842)
33 2lkc_A Translation initiation 99.8 7.1E-21 2.4E-25 173.8 9.5 158 81-283 6-163 (178)
34 2hjg_A GTP-binding protein ENG 99.8 3.6E-20 1.2E-24 194.6 12.4 158 81-283 173-341 (436)
35 4dcu_A GTP-binding protein ENG 99.8 1.6E-19 5.3E-24 190.8 13.2 159 80-283 192-361 (456)
36 4dhe_A Probable GTP-binding pr 99.8 2.2E-19 7.5E-24 170.6 12.7 161 80-283 26-203 (223)
37 3iev_A GTP-binding protein ERA 99.8 7E-19 2.4E-23 176.3 16.3 156 80-283 7-174 (308)
38 1wf3_A GTP-binding protein; GT 99.8 1.7E-18 5.8E-23 172.8 16.7 151 81-283 5-165 (301)
39 2dyk_A GTP-binding protein; GT 99.8 2.6E-18 9E-23 153.9 14.8 145 84-282 2-153 (161)
40 3i8s_A Ferrous iron transport 99.8 4.1E-19 1.4E-23 175.0 10.2 148 82-283 2-161 (274)
41 3iby_A Ferrous iron transport 99.8 3.5E-19 1.2E-23 173.7 8.5 146 84-283 2-159 (256)
42 3a1s_A Iron(II) transport prot 99.8 7.2E-19 2.5E-23 171.7 9.8 148 81-283 3-159 (258)
43 2hxs_A RAB-26, RAS-related pro 99.8 7.4E-18 2.5E-22 153.7 15.1 154 80-283 3-165 (178)
44 3k53_A Ferrous iron transport 99.8 1.1E-18 3.7E-23 171.7 9.5 148 82-283 2-158 (271)
45 1ega_A Protein (GTP-binding pr 99.8 1.6E-18 5.6E-23 173.0 10.2 153 81-283 6-167 (301)
46 3pqc_A Probable GTP-binding pr 99.7 5.4E-18 1.8E-22 156.8 12.6 154 80-283 20-186 (195)
47 1wms_A RAB-9, RAB9, RAS-relate 99.7 1.6E-17 5.6E-22 151.2 15.4 154 80-283 4-166 (177)
48 3clv_A RAB5 protein, putative; 99.7 7.2E-18 2.5E-22 156.8 13.1 103 161-283 93-196 (208)
49 3tkl_A RAS-related protein RAB 99.7 6.9E-18 2.4E-22 156.5 12.6 154 80-283 13-171 (196)
50 2fg5_A RAB-22B, RAS-related pr 99.7 1.3E-17 4.3E-22 154.9 14.4 154 81-282 21-177 (192)
51 2bme_A RAB4A, RAS-related prot 99.7 1.3E-17 4.6E-22 153.2 14.4 153 81-283 8-165 (186)
52 1z0f_A RAB14, member RAS oncog 99.7 3.8E-18 1.3E-22 155.5 10.6 156 80-283 12-170 (179)
53 1g16_A RAS-related protein SEC 99.7 6.2E-18 2.1E-22 152.7 11.7 151 82-283 2-157 (170)
54 2efe_B Small GTP-binding prote 99.7 4.1E-18 1.4E-22 155.8 10.4 155 80-282 9-166 (181)
55 1mky_A Probable GTP-binding pr 99.7 2.4E-17 8.2E-22 173.2 17.6 147 84-283 2-158 (439)
56 2oil_A CATX-8, RAS-related pro 99.7 9.6E-18 3.3E-22 155.5 12.8 157 79-283 21-180 (193)
57 2g6b_A RAS-related protein RAB 99.7 9.5E-18 3.2E-22 153.2 12.5 155 80-283 7-166 (180)
58 1svi_A GTP-binding protein YSX 99.7 1.2E-17 4.1E-22 154.9 13.3 155 80-283 20-187 (195)
59 1upt_A ARL1, ADP-ribosylation 99.7 1.6E-17 5.4E-22 150.3 13.6 152 81-283 5-161 (171)
60 2p5s_A RAS and EF-hand domain 99.7 1.2E-18 4E-23 162.9 6.3 163 79-283 24-189 (199)
61 2h57_A ADP-ribosylation factor 99.7 4.8E-18 1.6E-22 157.3 10.3 156 80-283 18-179 (190)
62 4dsu_A GTPase KRAS, isoform 2B 99.7 7.6E-18 2.6E-22 155.0 11.5 151 81-283 2-158 (189)
63 4bas_A ADP-ribosylation factor 99.7 1.9E-17 6.7E-22 153.8 14.4 156 79-283 13-181 (199)
64 1r2q_A RAS-related protein RAB 99.7 9.8E-18 3.4E-22 151.2 12.0 154 81-282 4-160 (170)
65 1kao_A RAP2A; GTP-binding prot 99.7 8.3E-18 2.8E-22 151.1 11.4 150 82-283 2-158 (167)
66 3cph_A RAS-related protein SEC 99.7 9.8E-18 3.4E-22 157.7 12.4 152 81-283 18-174 (213)
67 2gf9_A RAS-related protein RAB 99.7 1.2E-17 3.9E-22 154.6 12.6 156 80-283 19-177 (189)
68 1zd9_A ADP-ribosylation factor 99.7 6.8E-18 2.3E-22 156.2 11.0 154 80-282 19-176 (188)
69 3tw8_B RAS-related protein RAB 99.7 6.8E-18 2.3E-22 154.1 10.7 154 80-283 6-163 (181)
70 2il1_A RAB12; G-protein, GDP, 99.7 7.8E-18 2.7E-22 156.4 11.3 155 80-283 23-182 (192)
71 2fu5_C RAS-related protein RAB 99.7 7.8E-18 2.7E-22 154.5 11.2 152 81-283 6-163 (183)
72 2wji_A Ferrous iron transport 99.7 5.9E-18 2E-22 153.3 10.1 148 82-283 2-157 (165)
73 2y8e_A RAB-protein 6, GH09086P 99.7 1.4E-17 4.8E-22 151.7 12.5 153 80-282 11-168 (179)
74 3bc1_A RAS-related protein RAB 99.7 3.7E-17 1.3E-21 150.8 15.5 153 80-283 8-177 (195)
75 1x3s_A RAS-related protein RAB 99.7 1.2E-17 4.1E-22 154.6 12.0 155 80-283 12-170 (195)
76 1ek0_A Protein (GTP-binding pr 99.7 1.4E-17 4.9E-22 150.1 12.1 156 82-282 2-160 (170)
77 1zj6_A ADP-ribosylation factor 99.7 1.6E-17 5.5E-22 153.3 12.1 153 81-283 14-170 (187)
78 2ce2_X GTPase HRAS; signaling 99.7 4.3E-17 1.5E-21 146.0 14.5 150 82-283 2-157 (166)
79 1z0j_A RAB-22, RAS-related pro 99.7 1.3E-17 4.3E-22 150.7 10.8 155 81-283 4-161 (170)
80 3qq5_A Small GTP-binding prote 99.7 2.9E-18 1E-22 178.2 7.5 150 80-283 31-188 (423)
81 1zbd_A Rabphilin-3A; G protein 99.7 4.3E-17 1.5E-21 152.3 14.8 153 82-283 7-163 (203)
82 1mky_A Probable GTP-binding pr 99.7 1.7E-17 5.8E-22 174.4 13.4 158 81-283 178-347 (439)
83 1r8s_A ADP-ribosylation factor 99.7 4.2E-17 1.4E-21 146.6 14.1 150 84-283 1-154 (164)
84 2hup_A RAS-related protein RAB 99.7 6.3E-17 2.2E-21 151.5 15.7 155 80-283 26-185 (201)
85 2hjg_A GTP-binding protein ENG 99.7 1.1E-17 3.8E-22 175.6 11.7 147 83-283 3-157 (436)
86 1ksh_A ARF-like protein 2; sma 99.7 1.7E-17 5.8E-22 152.8 11.5 153 81-283 16-172 (186)
87 2ew1_A RAS-related protein RAB 99.7 3.4E-17 1.2E-21 153.6 13.7 154 80-283 23-181 (201)
88 1vg8_A RAS-related protein RAB 99.7 1.6E-17 5.5E-22 155.5 11.4 154 80-283 5-167 (207)
89 1u8z_A RAS-related protein RAL 99.7 3E-17 1E-21 147.6 12.6 151 82-283 3-159 (168)
90 3t1o_A Gliding protein MGLA; G 99.7 2.1E-17 7E-22 153.1 11.8 160 80-283 11-184 (198)
91 2nzj_A GTP-binding protein REM 99.7 2.8E-17 9.4E-22 149.3 12.4 154 81-283 2-161 (175)
92 1z08_A RAS-related protein RAB 99.7 2E-17 6.8E-22 149.5 11.3 153 81-283 4-161 (170)
93 1c1y_A RAS-related protein RAP 99.7 2.9E-17 9.8E-22 147.8 12.0 154 82-283 2-159 (167)
94 2fh5_B SR-beta, signal recogni 99.7 5E-17 1.7E-21 153.3 14.2 156 80-282 4-207 (214)
95 1z2a_A RAS-related protein RAB 99.7 3.5E-17 1.2E-21 147.4 12.2 153 81-283 3-159 (168)
96 3dz8_A RAS-related protein RAB 99.7 1.4E-17 4.7E-22 154.4 9.7 156 80-283 20-178 (191)
97 2xtp_A GTPase IMAP family memb 99.7 1.3E-17 4.3E-22 162.8 9.7 159 80-283 19-200 (260)
98 1mh1_A RAC1; GTP-binding, GTPa 99.7 2.6E-17 8.8E-22 151.0 11.1 156 81-283 3-172 (186)
99 4gzl_A RAS-related C3 botulinu 99.7 3.1E-17 1E-21 154.0 11.7 157 80-283 27-197 (204)
100 2h17_A ADP-ribosylation factor 99.7 4.2E-17 1.4E-21 149.7 12.2 154 79-282 17-174 (181)
101 3llu_A RAS-related GTP-binding 99.7 5.3E-17 1.8E-21 151.2 13.1 166 79-283 16-189 (196)
102 2a5j_A RAS-related protein RAB 99.7 3.7E-17 1.3E-21 151.5 11.9 154 80-283 18-176 (191)
103 2a9k_A RAS-related protein RAL 99.7 6.2E-17 2.1E-21 148.5 13.1 153 80-283 15-173 (187)
104 3con_A GTPase NRAS; structural 99.7 8.4E-17 2.9E-21 148.6 14.1 152 80-283 18-175 (190)
105 2o52_A RAS-related protein RAB 99.7 1.2E-17 3.9E-22 156.4 8.2 154 80-283 22-180 (200)
106 2fn4_A P23, RAS-related protei 99.7 5.2E-17 1.8E-21 148.2 12.4 152 80-283 6-164 (181)
107 1m2o_B GTP-binding protein SAR 99.7 9.5E-17 3.2E-21 148.9 14.2 157 81-282 21-183 (190)
108 2f7s_A C25KG, RAS-related prot 99.7 6.9E-17 2.3E-21 152.7 13.5 153 80-283 22-191 (217)
109 1ky3_A GTP-binding protein YPT 99.7 2.7E-17 9.1E-22 150.2 10.3 156 80-283 5-170 (182)
110 2gf0_A GTP-binding protein DI- 99.7 9.9E-17 3.4E-21 149.0 14.3 153 81-283 6-163 (199)
111 2bcg_Y Protein YP2, GTP-bindin 99.7 2.7E-17 9.4E-22 154.2 10.6 153 81-283 6-163 (206)
112 2bov_A RAla, RAS-related prote 99.7 9.2E-17 3.1E-21 150.1 14.1 153 80-283 11-169 (206)
113 2wjg_A FEOB, ferrous iron tran 99.7 2.3E-17 7.8E-22 152.1 9.7 149 81-283 5-161 (188)
114 3b1v_A Ferrous iron uptake tra 99.7 5.7E-18 2E-22 166.5 5.9 146 83-283 3-156 (272)
115 2b6h_A ADP-ribosylation factor 99.7 6.4E-17 2.2E-21 150.4 12.4 154 80-283 26-183 (192)
116 2erx_A GTP-binding protein DI- 99.7 1.2E-16 4.2E-21 144.2 13.7 152 82-282 2-158 (172)
117 1f6b_A SAR1; gtpases, N-termin 99.7 7.5E-17 2.5E-21 150.7 12.3 160 81-282 23-190 (198)
118 1moz_A ARL1, ADP-ribosylation 99.7 2.2E-17 7.6E-22 151.3 8.4 153 81-283 16-172 (183)
119 3q72_A GTP-binding protein RAD 99.7 9E-17 3.1E-21 144.7 12.3 151 83-283 2-156 (166)
120 3gj0_A GTP-binding nuclear pro 99.7 3.6E-17 1.2E-21 155.3 10.0 155 79-283 11-167 (221)
121 1fzq_A ADP-ribosylation factor 99.7 2.7E-16 9.2E-21 144.6 15.5 152 81-282 14-169 (181)
122 3kkq_A RAS-related protein M-R 99.7 1.3E-16 4.6E-21 146.2 13.3 153 80-283 15-174 (183)
123 2gj8_A MNME, tRNA modification 99.7 8.5E-17 2.9E-21 146.9 11.8 145 82-283 3-158 (172)
124 1z06_A RAS-related protein RAB 99.7 6.7E-17 2.3E-21 149.4 11.2 152 80-281 17-178 (189)
125 2x77_A ADP-ribosylation factor 99.7 3.9E-17 1.3E-21 150.9 9.3 153 81-283 20-176 (189)
126 2gco_A H9, RHO-related GTP-bin 99.7 3.9E-17 1.3E-21 152.8 9.2 160 81-283 23-192 (201)
127 3cpj_B GTP-binding protein YPT 99.7 6.6E-17 2.2E-21 153.9 10.7 153 81-283 11-168 (223)
128 3r7w_A Gtpase1, GTP-binding pr 99.7 1.5E-16 5.1E-21 159.3 13.7 161 83-281 3-171 (307)
129 3gee_A MNME, tRNA modification 99.7 1.5E-16 5.1E-21 168.0 14.3 150 82-283 232-390 (476)
130 3t5g_A GTP-binding protein RHE 99.7 4.1E-17 1.4E-21 149.4 8.8 152 81-283 4-161 (181)
131 2qu8_A Putative nucleolar GTP- 99.7 1.6E-16 5.5E-21 151.8 13.3 160 81-283 27-197 (228)
132 2atx_A Small GTP binding prote 99.7 8.8E-17 3E-21 149.1 11.0 159 81-283 16-185 (194)
133 3q85_A GTP-binding protein REM 99.7 2.7E-16 9.1E-21 142.0 13.7 151 83-283 2-159 (169)
134 3o47_A ADP-ribosylation factor 99.7 5.7E-17 1.9E-21 163.9 10.2 154 80-283 162-319 (329)
135 3oes_A GTPase rhebl1; small GT 99.7 5.5E-17 1.9E-21 151.7 9.3 155 80-283 21-179 (201)
136 4dcu_A GTP-binding protein ENG 99.7 6.5E-17 2.2E-21 170.7 10.9 150 80-283 20-177 (456)
137 2fv8_A H6, RHO-related GTP-bin 99.7 8.7E-17 3E-21 151.1 10.6 160 81-283 23-192 (207)
138 3reg_A RHO-like small GTPase; 99.7 1.4E-16 4.7E-21 147.9 11.8 158 79-283 19-180 (194)
139 4djt_A GTP-binding nuclear pro 99.7 6E-17 2E-21 153.2 9.3 154 80-283 8-167 (218)
140 2yc2_C IFT27, small RAB-relate 99.7 9.2E-17 3.1E-21 150.2 9.9 156 81-283 18-184 (208)
141 2j1l_A RHO-related GTP-binding 99.7 1.7E-16 5.8E-21 150.1 11.5 157 80-283 31-201 (214)
142 3bwd_D RAC-like GTP-binding pr 99.7 8.2E-17 2.8E-21 147.3 7.7 158 81-283 6-173 (182)
143 2j0v_A RAC-like GTP-binding pr 99.7 2.7E-16 9.3E-21 148.0 10.2 156 81-283 7-172 (212)
144 3lxw_A GTPase IMAP family memb 99.7 4.6E-16 1.6E-20 150.8 12.1 158 80-283 18-200 (247)
145 1xzp_A Probable tRNA modificat 99.6 2.4E-16 8.3E-21 166.5 10.7 147 82-283 242-397 (482)
146 2q3h_A RAS homolog gene family 99.6 4.7E-16 1.6E-20 145.0 11.2 157 80-283 17-187 (201)
147 2atv_A RERG, RAS-like estrogen 99.6 1.4E-15 4.9E-20 141.3 14.2 153 81-283 26-183 (196)
148 3q3j_B RHO-related GTP-binding 99.6 5.6E-16 1.9E-20 146.6 11.3 164 79-283 23-195 (214)
149 2cxx_A Probable GTP-binding pr 99.6 9.2E-16 3.1E-20 141.2 11.2 155 84-283 2-176 (190)
150 1m7b_A RND3/RHOE small GTP-bin 99.6 1.6E-15 5.6E-20 139.5 12.3 159 80-283 4-175 (184)
151 3l0i_B RAS-related protein RAB 99.6 1.4E-17 4.9E-22 155.4 -1.6 153 80-282 30-187 (199)
152 3geh_A MNME, tRNA modification 99.6 4E-16 1.4E-20 164.1 9.1 146 82-283 223-376 (462)
153 3th5_A RAS-related C3 botulinu 99.4 3E-17 1E-21 153.7 0.0 160 80-283 27-197 (204)
154 3lvq_E ARF-GAP with SH3 domain 99.6 1.6E-15 5.4E-20 161.9 13.0 154 80-283 319-476 (497)
155 3cbq_A GTP-binding protein REM 99.6 4.1E-15 1.4E-19 138.5 14.1 154 80-283 20-180 (195)
156 4dkx_A RAS-related protein RAB 99.6 1.7E-15 5.8E-20 143.7 10.8 154 80-283 10-168 (216)
157 3ihw_A Centg3; RAS, centaurin, 99.6 5.3E-15 1.8E-19 136.4 13.8 151 79-283 16-172 (184)
158 2iwr_A Centaurin gamma 1; ANK 99.6 6.5E-15 2.2E-19 134.2 14.2 149 81-283 5-161 (178)
159 3t5d_A Septin-7; GTP-binding p 99.6 2.4E-15 8.2E-20 148.0 12.1 160 82-283 7-196 (274)
160 3c5c_A RAS-like protein 12; GD 99.6 3E-15 1E-19 138.4 12.0 154 80-283 18-178 (187)
161 2qtf_A Protein HFLX, GTP-bindi 99.6 5.7E-15 2E-19 150.9 13.5 155 83-283 179-346 (364)
162 1gwn_A RHO-related GTP-binding 99.6 2.7E-15 9.2E-20 141.0 10.1 159 80-283 25-196 (205)
163 2wkq_A NPH1-1, RAS-related C3 99.6 3.7E-15 1.3E-19 149.9 11.1 159 81-283 153-322 (332)
164 1lnz_A SPO0B-associated GTP-bi 99.6 1.4E-15 4.7E-20 154.0 7.8 152 83-283 158-322 (342)
165 1nrj_B SR-beta, signal recogni 99.6 2.9E-15 1E-19 141.5 9.3 151 80-278 9-171 (218)
166 3lxx_A GTPase IMAP family memb 99.6 8.6E-15 2.9E-19 140.9 12.7 159 79-281 25-204 (239)
167 1h65_A Chloroplast outer envel 99.6 3.2E-14 1.1E-18 139.5 15.0 118 80-234 36-167 (270)
168 2zej_A Dardarin, leucine-rich 99.5 1.2E-14 4.1E-19 133.8 10.0 160 83-283 2-170 (184)
169 3def_A T7I23.11 protein; chlor 99.5 1.6E-14 5.6E-19 141.1 10.4 118 80-234 33-164 (262)
170 2e87_A Hypothetical protein PH 99.5 2.2E-14 7.6E-19 146.5 11.8 153 81-283 165-328 (357)
171 1pui_A ENGB, probable GTP-bind 99.5 5.3E-14 1.8E-18 131.9 12.8 156 80-283 23-191 (210)
172 2aka_B Dynamin-1; fusion prote 99.5 3.4E-14 1.2E-18 141.0 12.1 107 160-283 124-245 (299)
173 1jwy_B Dynamin A GTPase domain 99.5 2E-14 6.7E-19 144.0 9.8 69 159-235 129-212 (315)
174 2g3y_A GTP-binding protein GEM 99.5 6.3E-14 2.1E-18 132.4 12.1 155 80-283 34-195 (211)
175 3dpu_A RAB family protein; roc 99.5 1.3E-14 4.5E-19 156.2 8.2 153 80-283 38-200 (535)
176 2cjw_A GTP-binding protein GEM 99.5 1.7E-13 5.7E-18 127.2 13.1 154 81-283 4-164 (192)
177 3p32_A Probable GTPase RV1496/ 99.5 7.4E-14 2.5E-18 142.5 9.1 108 157-283 168-276 (355)
178 2f9l_A RAB11B, member RAS onco 99.5 1.6E-13 5.5E-18 127.8 10.6 152 82-283 4-160 (199)
179 2j69_A Bacterial dynamin-like 99.5 1.8E-13 6.3E-18 151.1 12.7 114 161-283 174-317 (695)
180 1wxq_A GTP-binding protein; st 99.5 1.7E-13 5.7E-18 141.6 11.5 37 161-197 71-114 (397)
181 2ged_A SR-beta, signal recogni 99.4 1.6E-13 5.3E-18 126.8 8.9 115 81-236 46-171 (193)
182 2p67_A LAO/AO transport system 99.4 2.9E-13 9.8E-18 137.4 8.7 107 158-283 146-253 (341)
183 3r7w_B Gtpase2, GTP-binding pr 99.4 3.9E-13 1.3E-17 134.0 8.8 177 85-303 1-187 (331)
184 1oix_A RAS-related protein RAB 99.4 9E-13 3.1E-17 122.1 9.5 153 81-283 27-184 (191)
185 2qag_A Septin-2, protein NEDD5 99.4 3.1E-12 1.1E-16 130.7 12.6 159 82-281 36-223 (361)
186 2qpt_A EH domain-containing pr 99.4 1.4E-12 4.7E-17 140.3 10.4 79 161-251 154-244 (550)
187 2www_A Methylmalonic aciduria 99.3 2.1E-12 7.3E-17 131.3 10.6 107 158-283 164-271 (349)
188 2x2e_A Dynamin-1; nitration, h 99.3 3.4E-12 1.2E-16 130.1 11.5 107 160-283 129-250 (353)
189 3zvr_A Dynamin-1; hydrolase, D 99.3 3.4E-12 1.1E-16 140.4 11.9 120 146-283 134-270 (772)
190 3t34_A Dynamin-related protein 99.3 3.2E-12 1.1E-16 130.6 10.8 104 160-281 135-251 (360)
191 3c5h_A Glucocorticoid receptor 99.3 5.1E-13 1.7E-17 129.9 3.7 79 184-283 162-247 (255)
192 2wsm_A Hydrogenase expression/ 99.3 1.8E-12 6.3E-17 122.5 6.3 165 81-283 28-206 (221)
193 1udx_A The GTP-binding protein 99.3 1.1E-11 3.7E-16 128.4 11.5 154 82-284 156-318 (416)
194 1yrb_A ATP(GTP)binding protein 99.2 4.4E-11 1.5E-15 116.1 11.1 107 160-283 108-249 (262)
195 4a9a_A Ribosome-interacting GT 99.2 5.3E-11 1.8E-15 121.4 9.3 111 82-233 71-194 (376)
196 1xe1_A Hypothetical protein PF 99.1 2.1E-10 7.3E-15 95.0 9.0 80 310-393 32-113 (116)
197 1jal_A YCHF protein; nucleotid 99.1 3.4E-10 1.2E-14 114.7 11.1 82 84-196 3-108 (363)
198 2qm8_A GTPase/ATPase; G protei 99.1 2.6E-10 8.8E-15 115.3 8.8 108 158-283 145-253 (337)
199 2dby_A GTP-binding protein; GD 99.0 5.4E-10 1.8E-14 113.9 10.6 37 160-196 68-111 (368)
200 2j37_W Signal recognition part 99.0 3.7E-10 1.3E-14 119.4 9.1 65 159-234 182-253 (504)
201 2qnr_A Septin-2, protein NEDD5 99.0 1.7E-09 5.7E-14 107.6 11.3 161 82-283 17-206 (301)
202 2qag_C Septin-7; cell cycle, c 99.0 7.6E-10 2.6E-14 114.6 7.7 158 82-281 30-217 (418)
203 2hf9_A Probable hydrogenase ni 98.9 2E-09 6.8E-14 101.8 8.2 99 160-283 118-216 (226)
204 3ohm_A Guanine nucleotide-bind 98.8 8.7E-09 3E-13 103.1 9.6 135 145-283 151-310 (327)
205 3ec1_A YQEH GTPase; atnos1, at 98.8 8.3E-10 2.8E-14 112.9 0.4 150 83-281 162-321 (369)
206 4fid_A G protein alpha subunit 98.7 5.4E-08 1.8E-12 97.7 12.1 88 145-233 145-240 (340)
207 2qag_B Septin-6, protein NEDD5 98.7 3.2E-08 1.1E-12 102.2 10.6 138 81-258 40-209 (427)
208 3h2y_A GTPase family protein; 98.7 1.8E-09 6.2E-14 110.3 1.0 151 83-281 160-320 (368)
209 1tq4_A IIGP1, interferon-induc 98.6 3E-07 1E-11 94.9 14.5 157 82-283 68-245 (413)
210 2v3c_C SRP54, signal recogniti 98.6 3.3E-08 1.1E-12 102.8 7.3 113 159-284 179-304 (432)
211 3sop_A Neuronal-specific septi 98.6 1.6E-07 5.5E-12 91.7 10.9 63 184-259 111-174 (270)
212 2ohf_A Protein OLA1, GTP-bindi 98.6 3.8E-08 1.3E-12 100.7 6.6 85 81-196 20-128 (396)
213 1cip_A Protein (guanine nucleo 98.6 8.1E-08 2.8E-12 97.3 8.8 135 145-283 177-336 (353)
214 3dm5_A SRP54, signal recogniti 98.5 5.3E-07 1.8E-11 93.5 12.9 96 159-282 181-282 (443)
215 1zcb_A G alpha I/13; GTP-bindi 98.5 2.2E-07 7.7E-12 94.4 8.0 138 145-283 185-345 (362)
216 3kl4_A SRP54, signal recogniti 98.4 1.8E-06 6.2E-11 89.4 13.5 94 159-281 178-280 (433)
217 1j8m_F SRP54, signal recogniti 98.4 2E-06 6.9E-11 85.0 12.6 96 159-282 179-282 (297)
218 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 7.8E-07 2.7E-11 91.1 8.3 86 81-196 18-127 (392)
219 1u0l_A Probable GTPase ENGC; p 98.3 4.8E-07 1.6E-11 89.8 4.4 102 162-283 64-165 (301)
220 1puj_A YLQF, conserved hypothe 98.2 2.6E-06 8.7E-11 83.6 8.2 95 165-283 3-98 (282)
221 1azs_C GS-alpha; complex (lyas 98.2 4.3E-06 1.5E-10 85.8 9.9 85 145-233 201-296 (402)
222 1f5n_A Interferon-induced guan 98.1 1.1E-06 3.7E-11 94.5 4.7 26 80-105 35-60 (592)
223 2xtz_A Guanine nucleotide-bind 98.1 1.9E-06 6.5E-11 87.2 5.9 83 147-233 163-262 (354)
224 3e70_C DPA, signal recognition 98.1 1E-05 3.6E-10 80.9 10.2 93 160-281 211-310 (328)
225 2xxa_A Signal recognition part 98.1 5.8E-06 2E-10 85.9 8.5 64 159-233 182-252 (433)
226 1puj_A YLQF, conserved hypothe 98.0 4.7E-06 1.6E-10 81.7 5.1 59 81-172 118-176 (282)
227 2yv5_A YJEQ protein; hydrolase 97.9 8.6E-06 3E-10 80.7 6.3 87 180-283 75-161 (302)
228 3cnl_A YLQF, putative uncharac 97.8 3.8E-05 1.3E-09 74.4 7.9 87 169-282 5-92 (262)
229 3ec1_A YQEH GTPase; atnos1, at 97.7 6E-05 2E-09 76.7 8.6 104 163-283 51-154 (369)
230 2yhs_A FTSY, cell division pro 97.7 4.6E-05 1.6E-09 79.8 7.7 25 82-106 292-316 (503)
231 1t9h_A YLOQ, probable GTPase E 97.7 4.2E-05 1.4E-09 75.7 6.6 87 181-283 83-169 (307)
232 3h2y_A GTPase family protein; 97.7 4.7E-05 1.6E-09 77.5 6.9 98 170-283 55-152 (368)
233 1rj9_A FTSY, signal recognitio 97.6 0.00011 3.7E-09 72.7 8.4 64 160-234 184-260 (304)
234 1d1n_A Initiation factor 2; be 97.6 6.4E-05 2.2E-09 60.5 5.2 77 315-393 9-90 (99)
235 3szr_A Interferon-induced GTP- 97.6 0.00014 4.8E-09 78.9 9.7 65 160-234 146-227 (608)
236 3l82_B F-box only protein 4; T 97.5 0.00016 5.6E-09 66.8 7.5 94 170-281 111-213 (227)
237 3cnl_A YLQF, putative uncharac 97.5 3.1E-05 1.1E-09 75.0 2.8 22 84-105 100-121 (262)
238 2crv_A IF-2MT, translation ini 97.5 0.00026 9E-09 58.9 7.7 78 314-393 12-98 (120)
239 1vma_A Cell division protein F 97.5 0.00021 7E-09 70.7 8.3 26 81-106 102-127 (306)
240 2px0_A Flagellar biosynthesis 97.4 0.00022 7.4E-09 70.3 7.0 24 82-105 104-127 (296)
241 2ffh_A Protein (FFH); SRP54, s 97.4 0.00018 6E-09 74.4 6.4 64 159-233 179-249 (425)
242 1zu4_A FTSY; GTPase, signal re 97.4 0.0011 3.7E-08 66.0 11.7 26 81-106 103-128 (320)
243 4dzz_A Plasmid partitioning pr 97.2 0.0016 5.4E-08 59.7 9.7 64 159-233 74-142 (206)
244 3q5d_A Atlastin-1; G protein, 97.1 0.0014 4.8E-08 68.0 9.5 27 80-106 64-90 (447)
245 1zo1_I IF2, translation initia 97.1 0.0016 5.4E-08 68.7 9.8 89 304-394 400-493 (501)
246 3l2o_B F-box only protein 4; s 97.0 0.001 3.6E-08 64.5 7.2 96 168-281 194-298 (312)
247 2rcn_A Probable GTPase ENGC; Y 97.0 0.00091 3.1E-08 67.4 6.9 83 182-282 128-210 (358)
248 3b9q_A Chloroplast SRP recepto 96.8 0.0028 9.5E-08 62.5 8.6 26 81-106 98-123 (302)
249 1ls1_A Signal recognition part 96.8 0.0026 9E-08 62.4 8.2 64 159-233 179-249 (295)
250 3cwq_A Para family chromosome 96.8 0.0046 1.6E-07 57.3 9.2 65 159-233 66-132 (209)
251 2og2_A Putative signal recogni 96.7 0.003 1E-07 63.7 7.7 26 81-106 155-180 (359)
252 3izy_P Translation initiation 96.6 0.0058 2E-07 64.9 9.7 178 166-392 346-534 (537)
253 1g7s_A Translation initiation 96.5 0.011 3.8E-07 63.7 10.9 83 311-394 462-549 (594)
254 1t9h_A YLOQ, probable GTPase E 95.9 0.0016 5.4E-08 64.3 0.5 23 83-105 173-195 (307)
255 3ea0_A ATPase, para family; al 95.6 0.018 6.1E-07 54.1 6.5 65 160-233 118-184 (245)
256 3end_A Light-independent proto 95.5 0.017 5.8E-07 56.6 6.3 67 159-233 155-225 (307)
257 2yv5_A YJEQ protein; hydrolase 95.3 0.013 4.5E-07 57.5 4.6 21 84-104 166-186 (302)
258 4ido_A Atlastin-1; GTPase, GTP 95.1 0.11 3.8E-06 53.6 11.2 137 80-233 64-221 (457)
259 1ye8_A Protein THEP1, hypothet 94.9 0.014 4.9E-07 52.6 3.4 23 85-107 2-24 (178)
260 1lvg_A Guanylate kinase, GMP k 94.5 0.018 6E-07 52.8 2.8 23 84-106 5-27 (198)
261 1kgd_A CASK, peripheral plasma 94.4 0.024 8.3E-07 50.9 3.6 23 84-106 6-28 (180)
262 3c8u_A Fructokinase; YP_612366 94.4 0.026 8.8E-07 52.0 3.9 26 81-106 20-45 (208)
263 3asz_A Uridine kinase; cytidin 94.3 0.027 9.2E-07 51.7 3.8 27 82-108 5-31 (211)
264 1bif_A 6-phosphofructo-2-kinas 94.3 0.015 5.2E-07 60.8 2.3 26 81-106 37-62 (469)
265 1knq_A Gluconate kinase; ALFA/ 94.2 0.037 1.3E-06 49.1 4.3 28 82-109 7-34 (175)
266 1znw_A Guanylate kinase, GMP k 94.1 0.026 9E-07 51.8 3.3 25 83-107 20-44 (207)
267 2ph1_A Nucleotide-binding prot 94.1 0.084 2.9E-06 50.3 7.0 68 159-233 127-194 (262)
268 4eun_A Thermoresistant glucoki 94.1 0.032 1.1E-06 50.9 3.8 28 82-109 28-55 (200)
269 1kag_A SKI, shikimate kinase I 94.1 0.029 9.9E-07 49.6 3.3 26 84-109 5-30 (173)
270 3kjh_A CO dehydrogenase/acetyl 94.0 0.055 1.9E-06 50.7 5.4 67 158-233 129-195 (254)
271 3tr0_A Guanylate kinase, GMP k 94.0 0.033 1.1E-06 50.7 3.7 24 84-107 8-31 (205)
272 3a00_A Guanylate kinase, GMP k 93.9 0.027 9.2E-07 50.8 2.9 23 84-106 2-24 (186)
273 1g3q_A MIND ATPase, cell divis 93.9 0.065 2.2E-06 50.0 5.7 65 160-233 111-175 (237)
274 1zp6_A Hypothetical protein AT 93.9 0.032 1.1E-06 50.2 3.3 24 83-106 9-32 (191)
275 4gp7_A Metallophosphoesterase; 93.8 0.032 1.1E-06 49.7 3.0 21 84-104 10-30 (171)
276 3ney_A 55 kDa erythrocyte memb 93.7 0.041 1.4E-06 50.4 3.8 27 81-107 17-43 (197)
277 3lw7_A Adenylate kinase relate 93.7 0.039 1.3E-06 48.4 3.5 25 84-109 2-26 (179)
278 2bbw_A Adenylate kinase 4, AK4 93.7 0.043 1.5E-06 51.8 3.9 28 83-110 27-54 (246)
279 1z6g_A Guanylate kinase; struc 93.6 0.035 1.2E-06 51.6 3.0 25 83-107 23-47 (218)
280 1hyq_A MIND, cell division inh 93.6 0.079 2.7E-06 50.3 5.7 65 160-233 110-174 (263)
281 3kb2_A SPBC2 prophage-derived 93.5 0.045 1.5E-06 48.1 3.6 25 84-108 2-26 (173)
282 2j41_A Guanylate kinase; GMP, 93.5 0.043 1.5E-06 49.9 3.6 24 83-106 6-29 (207)
283 3tau_A Guanylate kinase, GMP k 93.5 0.043 1.5E-06 50.5 3.5 26 82-107 7-32 (208)
284 1htw_A HI0065; nucleotide-bind 93.5 0.043 1.5E-06 48.4 3.3 26 82-107 32-57 (158)
285 3t61_A Gluconokinase; PSI-biol 93.4 0.045 1.5E-06 49.9 3.5 27 83-109 18-44 (202)
286 3la6_A Tyrosine-protein kinase 93.4 0.14 4.9E-06 49.7 7.2 66 160-233 201-266 (286)
287 1tev_A UMP-CMP kinase; ploop, 93.4 0.053 1.8E-06 48.7 3.8 28 82-109 2-29 (196)
288 2jeo_A Uridine-cytidine kinase 93.3 0.053 1.8E-06 51.2 3.9 28 82-109 24-51 (245)
289 2rcn_A Probable GTPase ENGC; Y 93.3 0.04 1.4E-06 55.4 3.1 22 84-105 216-237 (358)
290 1s96_A Guanylate kinase, GMP k 93.3 0.048 1.7E-06 50.8 3.5 26 82-107 15-40 (219)
291 1np6_A Molybdopterin-guanine d 93.3 0.053 1.8E-06 48.6 3.6 23 83-105 6-28 (174)
292 2rhm_A Putative kinase; P-loop 93.2 0.063 2.1E-06 48.2 4.1 28 82-109 4-31 (193)
293 1cke_A CK, MSSA, protein (cyti 93.2 0.053 1.8E-06 50.2 3.6 25 84-108 6-30 (227)
294 3cm0_A Adenylate kinase; ATP-b 93.1 0.065 2.2E-06 47.9 4.0 27 83-109 4-30 (186)
295 3tqc_A Pantothenate kinase; bi 93.1 0.062 2.1E-06 53.1 4.2 29 80-108 89-117 (321)
296 2pcj_A ABC transporter, lipopr 93.1 0.048 1.6E-06 51.0 3.1 21 84-104 31-51 (224)
297 2bdt_A BH3686; alpha-beta prot 93.0 0.048 1.6E-06 49.1 3.0 23 84-106 3-25 (189)
298 3tif_A Uncharacterized ABC tra 93.0 0.047 1.6E-06 51.5 3.0 22 83-104 31-52 (235)
299 3b85_A Phosphate starvation-in 93.0 0.048 1.6E-06 50.4 3.0 22 84-105 23-44 (208)
300 1ly1_A Polynucleotide kinase; 93.0 0.053 1.8E-06 48.0 3.2 22 84-105 3-24 (181)
301 1xjc_A MOBB protein homolog; s 92.9 0.063 2.2E-06 47.9 3.5 24 82-105 3-26 (169)
302 2v9p_A Replication protein E1; 92.9 0.052 1.8E-06 53.3 3.2 26 81-106 124-149 (305)
303 3aez_A Pantothenate kinase; tr 92.9 0.066 2.2E-06 52.8 4.0 28 80-107 87-114 (312)
304 2onk_A Molybdate/tungstate ABC 92.9 0.051 1.7E-06 51.4 3.0 22 84-105 25-46 (240)
305 2qor_A Guanylate kinase; phosp 92.8 0.056 1.9E-06 49.4 3.2 26 82-107 11-36 (204)
306 2c95_A Adenylate kinase 1; tra 92.8 0.071 2.4E-06 47.9 3.9 28 82-109 8-35 (196)
307 2jaq_A Deoxyguanosine kinase; 92.8 0.066 2.3E-06 48.4 3.7 25 85-109 2-26 (205)
308 3trf_A Shikimate kinase, SK; a 92.8 0.067 2.3E-06 47.8 3.7 27 83-109 5-31 (185)
309 2cbz_A Multidrug resistance-as 92.8 0.048 1.6E-06 51.5 2.7 21 84-104 32-52 (237)
310 3vaa_A Shikimate kinase, SK; s 92.8 0.07 2.4E-06 48.5 3.8 28 82-109 24-51 (199)
311 2pze_A Cystic fibrosis transme 92.7 0.05 1.7E-06 51.1 2.7 21 84-104 35-55 (229)
312 2plr_A DTMP kinase, probable t 92.7 0.077 2.6E-06 48.3 4.0 27 83-109 4-30 (213)
313 1aky_A Adenylate kinase; ATP:A 92.7 0.07 2.4E-06 49.3 3.7 29 81-109 2-30 (220)
314 2i3b_A HCR-ntpase, human cance 92.7 0.057 2E-06 49.1 3.0 22 85-106 3-24 (189)
315 2if2_A Dephospho-COA kinase; a 92.7 0.068 2.3E-06 48.6 3.5 24 84-108 2-25 (204)
316 2eyu_A Twitching motility prot 92.7 0.061 2.1E-06 51.6 3.3 24 82-105 24-47 (261)
317 1uj2_A Uridine-cytidine kinase 92.6 0.076 2.6E-06 50.4 3.8 29 80-108 19-47 (252)
318 1g6h_A High-affinity branched- 92.6 0.053 1.8E-06 51.9 2.7 21 84-104 34-54 (257)
319 1jjv_A Dephospho-COA kinase; P 92.6 0.064 2.2E-06 48.9 3.2 25 84-109 3-27 (206)
320 1qhx_A CPT, protein (chloramph 92.5 0.08 2.7E-06 46.9 3.7 25 84-108 4-28 (178)
321 1uf9_A TT1252 protein; P-loop, 92.5 0.072 2.5E-06 48.2 3.5 26 81-106 6-31 (203)
322 1odf_A YGR205W, hypothetical 3 92.5 0.083 2.8E-06 51.5 4.1 27 80-106 28-54 (290)
323 2qt1_A Nicotinamide riboside k 92.5 0.079 2.7E-06 48.4 3.8 26 81-106 19-44 (207)
324 1ukz_A Uridylate kinase; trans 92.5 0.086 2.9E-06 47.9 4.0 29 81-109 13-41 (203)
325 2d2e_A SUFC protein; ABC-ATPas 92.5 0.062 2.1E-06 51.1 3.1 22 84-105 30-51 (250)
326 2ff7_A Alpha-hemolysin translo 92.5 0.056 1.9E-06 51.3 2.7 22 84-105 36-57 (247)
327 2cdn_A Adenylate kinase; phosp 92.5 0.091 3.1E-06 47.7 4.1 30 80-109 17-46 (201)
328 3gfo_A Cobalt import ATP-bindi 92.4 0.057 1.9E-06 52.2 2.7 21 84-104 35-55 (275)
329 1mv5_A LMRA, multidrug resista 92.4 0.063 2.2E-06 50.8 3.0 21 84-104 29-49 (243)
330 2ghi_A Transport protein; mult 92.4 0.058 2E-06 51.7 2.7 22 84-105 47-68 (260)
331 1kht_A Adenylate kinase; phosp 92.4 0.07 2.4E-06 47.7 3.1 26 83-108 3-28 (192)
332 3bfv_A CAPA1, CAPB2, membrane 92.4 0.22 7.4E-06 47.9 6.8 66 160-233 191-256 (271)
333 2f1r_A Molybdopterin-guanine d 92.4 0.039 1.3E-06 49.4 1.3 22 84-105 3-24 (171)
334 1qf9_A UMP/CMP kinase, protein 92.3 0.11 3.6E-06 46.5 4.3 27 83-109 6-32 (194)
335 4g1u_C Hemin import ATP-bindin 92.3 0.066 2.2E-06 51.5 3.0 22 83-104 37-58 (266)
336 3uie_A Adenylyl-sulfate kinase 92.3 0.09 3.1E-06 47.8 3.9 27 81-107 23-49 (200)
337 1wcv_1 SOJ, segregation protei 92.3 0.3 1E-05 46.2 7.7 66 159-233 110-181 (257)
338 1b0u_A Histidine permease; ABC 92.3 0.065 2.2E-06 51.4 3.0 21 84-104 33-53 (262)
339 3fb4_A Adenylate kinase; psych 92.3 0.083 2.8E-06 48.5 3.6 25 85-109 2-26 (216)
340 1ji0_A ABC transporter; ATP bi 92.3 0.067 2.3E-06 50.5 3.0 21 84-104 33-53 (240)
341 3tlx_A Adenylate kinase 2; str 92.3 0.093 3.2E-06 49.5 4.0 29 81-109 27-55 (243)
342 1y63_A LMAJ004144AAA protein; 92.2 0.1 3.4E-06 46.9 4.0 25 82-106 9-33 (184)
343 3zvl_A Bifunctional polynucleo 92.2 0.33 1.1E-05 49.7 8.3 27 80-106 255-281 (416)
344 2bwj_A Adenylate kinase 5; pho 92.2 0.077 2.6E-06 47.8 3.2 28 82-109 11-38 (199)
345 1sgw_A Putative ABC transporte 92.2 0.061 2.1E-06 50.0 2.5 21 84-104 36-56 (214)
346 2qi9_C Vitamin B12 import ATP- 92.2 0.065 2.2E-06 51.0 2.7 21 84-104 27-47 (249)
347 1vpl_A ABC transporter, ATP-bi 92.1 0.065 2.2E-06 51.2 2.7 21 84-104 42-62 (256)
348 1nks_A Adenylate kinase; therm 92.1 0.083 2.8E-06 47.2 3.3 25 84-108 2-26 (194)
349 2zu0_C Probable ATP-dependent 92.1 0.072 2.5E-06 51.2 3.0 22 84-105 47-68 (267)
350 4e22_A Cytidylate kinase; P-lo 92.1 0.091 3.1E-06 49.9 3.7 28 82-109 26-53 (252)
351 2olj_A Amino acid ABC transpor 92.1 0.072 2.5E-06 51.1 3.0 22 83-104 50-71 (263)
352 1sq5_A Pantothenate kinase; P- 92.1 0.1 3.6E-06 51.2 4.2 28 81-108 78-105 (308)
353 1u0l_A Probable GTPase ENGC; p 92.0 0.073 2.5E-06 52.1 3.0 22 84-105 170-191 (301)
354 2yvu_A Probable adenylyl-sulfa 92.0 0.097 3.3E-06 46.9 3.6 26 81-106 11-36 (186)
355 2wwf_A Thymidilate kinase, put 92.0 0.085 2.9E-06 48.1 3.3 25 82-106 9-33 (212)
356 2ixe_A Antigen peptide transpo 92.0 0.069 2.3E-06 51.5 2.7 21 84-104 46-66 (271)
357 1zd8_A GTP:AMP phosphotransfer 92.0 0.095 3.3E-06 48.7 3.6 28 82-109 6-33 (227)
358 4a74_A DNA repair and recombin 92.0 0.087 3E-06 48.6 3.4 23 83-105 25-47 (231)
359 1nn5_A Similar to deoxythymidy 92.0 0.088 3E-06 48.1 3.4 25 82-106 8-32 (215)
360 3dl0_A Adenylate kinase; phosp 92.0 0.094 3.2E-06 48.2 3.5 25 85-109 2-26 (216)
361 1rz3_A Hypothetical protein rb 91.9 0.091 3.1E-06 47.9 3.4 26 81-106 20-45 (201)
362 2ehv_A Hypothetical protein PH 91.9 0.081 2.8E-06 49.5 3.1 23 82-104 29-51 (251)
363 3lnc_A Guanylate kinase, GMP k 91.9 0.061 2.1E-06 50.2 2.2 22 83-104 27-48 (231)
364 3iij_A Coilin-interacting nucl 91.9 0.096 3.3E-06 46.6 3.4 27 82-108 10-36 (180)
365 2v54_A DTMP kinase, thymidylat 91.8 0.089 3.1E-06 47.7 3.2 26 82-107 3-28 (204)
366 3cio_A ETK, tyrosine-protein k 91.8 0.32 1.1E-05 47.4 7.3 66 160-233 213-278 (299)
367 2yz2_A Putative ABC transporte 91.8 0.082 2.8E-06 50.8 3.0 21 84-104 34-54 (266)
368 2vli_A Antibiotic resistance p 91.7 0.082 2.8E-06 47.0 2.7 27 82-108 4-30 (183)
369 1nij_A Hypothetical protein YJ 91.7 0.099 3.4E-06 51.6 3.6 25 82-106 3-27 (318)
370 2ihy_A ABC transporter, ATP-bi 91.6 0.086 2.9E-06 51.1 3.0 21 84-104 48-68 (279)
371 2nq2_C Hypothetical ABC transp 91.6 0.087 3E-06 50.2 2.9 21 84-104 32-52 (253)
372 1via_A Shikimate kinase; struc 91.5 0.11 3.7E-06 46.1 3.2 25 85-109 6-30 (175)
373 1zak_A Adenylate kinase; ATP:A 91.4 0.11 3.9E-06 47.9 3.5 27 83-109 5-31 (222)
374 3kta_A Chromosome segregation 91.4 0.13 4.4E-06 45.8 3.7 24 85-108 28-51 (182)
375 1ex7_A Guanylate kinase; subst 91.3 0.11 3.8E-06 47.1 3.2 22 86-107 4-25 (186)
376 3ec2_A DNA replication protein 91.3 0.099 3.4E-06 46.6 2.9 23 83-105 38-60 (180)
377 2bbs_A Cystic fibrosis transme 91.3 0.094 3.2E-06 51.1 2.8 21 84-104 65-85 (290)
378 1vht_A Dephospho-COA kinase; s 91.2 0.12 4.1E-06 47.6 3.4 25 83-108 4-28 (218)
379 3jvv_A Twitching mobility prot 91.1 0.11 3.8E-06 52.1 3.3 23 84-106 124-146 (356)
380 2pt5_A Shikimate kinase, SK; a 91.1 0.14 4.8E-06 44.8 3.6 24 85-108 2-25 (168)
381 3umf_A Adenylate kinase; rossm 91.1 0.17 5.9E-06 47.0 4.3 30 80-109 26-55 (217)
382 2p5t_B PEZT; postsegregational 91.1 0.11 3.9E-06 49.2 3.2 29 80-108 29-57 (253)
383 1e4v_A Adenylate kinase; trans 91.1 0.14 4.8E-06 47.0 3.7 25 85-109 2-26 (214)
384 2gza_A Type IV secretion syste 91.1 0.095 3.2E-06 52.7 2.7 23 83-105 175-197 (361)
385 2pt7_A CAG-ALFA; ATPase, prote 91.1 0.086 2.9E-06 52.4 2.4 23 83-105 171-193 (330)
386 2grj_A Dephospho-COA kinase; T 91.1 0.15 5.2E-06 46.3 3.9 29 81-109 10-38 (192)
387 2iyv_A Shikimate kinase, SK; t 91.0 0.12 4E-06 46.1 3.1 26 84-109 3-28 (184)
388 3be4_A Adenylate kinase; malar 91.0 0.15 5.1E-06 47.0 3.8 28 82-109 4-31 (217)
389 2kjq_A DNAA-related protein; s 91.0 0.12 4E-06 44.9 2.9 24 82-105 35-58 (149)
390 1zuh_A Shikimate kinase; alpha 91.0 0.14 4.9E-06 44.8 3.6 26 84-109 8-33 (168)
391 2pjz_A Hypothetical protein ST 90.9 0.11 3.9E-06 49.8 3.0 21 84-104 31-51 (263)
392 3r20_A Cytidylate kinase; stru 90.9 0.14 5E-06 48.0 3.7 28 82-109 8-35 (233)
393 3nh6_A ATP-binding cassette SU 90.9 0.066 2.3E-06 52.6 1.3 24 82-105 79-102 (306)
394 3tui_C Methionine import ATP-b 90.7 0.12 4.1E-06 52.0 3.0 23 83-105 54-76 (366)
395 2ewv_A Twitching motility prot 90.7 0.12 4.2E-06 52.1 3.2 24 82-105 135-158 (372)
396 1gvn_B Zeta; postsegregational 90.7 0.17 5.8E-06 49.1 4.0 27 81-107 31-57 (287)
397 1q3t_A Cytidylate kinase; nucl 90.6 0.17 5.8E-06 47.3 3.8 29 81-109 14-42 (236)
398 3k9g_A PF-32 protein; ssgcid, 90.6 0.55 1.9E-05 44.5 7.6 65 159-233 143-209 (267)
399 2pbr_A DTMP kinase, thymidylat 90.5 0.14 4.7E-06 45.8 3.0 23 85-107 2-24 (195)
400 2pez_A Bifunctional 3'-phospho 90.5 0.15 5.1E-06 45.3 3.2 24 82-105 4-27 (179)
401 1e6c_A Shikimate kinase; phosp 90.4 0.15 5.1E-06 44.8 3.1 26 84-109 3-28 (173)
402 2vhj_A Ntpase P4, P4; non- hyd 90.4 0.54 1.9E-05 46.3 7.4 22 84-105 124-145 (331)
403 1gtv_A TMK, thymidylate kinase 90.3 0.087 3E-06 48.1 1.5 22 85-106 2-23 (214)
404 2oap_1 GSPE-2, type II secreti 90.3 0.12 4.1E-06 54.5 2.7 23 83-105 260-282 (511)
405 3fvq_A Fe(3+) IONS import ATP- 90.3 0.14 4.9E-06 51.3 3.2 53 209-271 143-196 (359)
406 4a1f_A DNAB helicase, replicat 90.2 0.91 3.1E-05 45.0 9.0 71 161-233 128-207 (338)
407 1lw7_A Transcriptional regulat 90.2 0.12 4.2E-06 51.9 2.6 26 83-108 170-195 (365)
408 2ze6_A Isopentenyl transferase 90.1 0.19 6.4E-06 47.8 3.8 24 85-108 3-26 (253)
409 1ak2_A Adenylate kinase isoenz 90.1 0.2 6.7E-06 46.8 3.8 28 82-109 15-42 (233)
410 2z0h_A DTMP kinase, thymidylat 90.1 0.19 6.5E-06 45.1 3.6 23 85-107 2-24 (197)
411 1v5w_A DMC1, meiotic recombina 90.1 1.1 3.9E-05 44.3 9.7 25 82-106 121-145 (343)
412 3a4m_A L-seryl-tRNA(SEC) kinas 90.1 0.16 5.4E-06 48.4 3.2 24 83-106 4-27 (260)
413 1z47_A CYSA, putative ABC-tran 90.1 0.15 5E-06 51.2 3.1 45 210-258 151-196 (355)
414 2f6r_A COA synthase, bifunctio 90.1 0.18 6.1E-06 48.8 3.6 27 81-108 73-99 (281)
415 2yyz_A Sugar ABC transporter, 90.0 0.15 5.1E-06 51.2 3.1 45 210-258 139-184 (359)
416 1p9r_A General secretion pathw 89.9 0.17 5.8E-06 51.9 3.5 25 82-106 166-190 (418)
417 2xb4_A Adenylate kinase; ATP-b 89.9 0.2 6.8E-06 46.5 3.7 25 85-109 2-26 (223)
418 3nwj_A ATSK2; P loop, shikimat 89.9 0.17 5.8E-06 48.1 3.2 27 83-109 48-74 (250)
419 3q9l_A Septum site-determining 89.8 0.28 9.5E-06 46.2 4.7 65 160-233 113-185 (260)
420 2it1_A 362AA long hypothetical 89.8 0.16 5.4E-06 51.1 3.0 22 84-105 30-51 (362)
421 2oze_A ORF delta'; para, walke 89.8 0.71 2.4E-05 44.5 7.7 65 160-233 154-224 (298)
422 2vp4_A Deoxynucleoside kinase; 89.7 0.15 5E-06 47.7 2.6 28 81-108 18-45 (230)
423 3sr0_A Adenylate kinase; phosp 89.7 0.21 7.2E-06 45.9 3.6 25 85-109 2-26 (206)
424 1g29_1 MALK, maltose transport 89.7 0.16 5.5E-06 51.2 3.1 21 84-104 30-50 (372)
425 3bh0_A DNAB-like replicative h 89.7 0.53 1.8E-05 46.2 6.7 25 82-106 67-91 (315)
426 3rlf_A Maltose/maltodextrin im 89.6 0.17 5.7E-06 51.2 3.0 52 210-271 139-191 (381)
427 2x8a_A Nuclear valosin-contain 89.6 0.19 6.6E-06 48.4 3.4 24 85-108 46-69 (274)
428 1v43_A Sugar-binding transport 89.6 0.17 5.7E-06 51.1 3.0 47 207-258 145-192 (372)
429 2xj4_A MIPZ; replication, cell 89.4 0.36 1.2E-05 46.5 5.2 35 160-196 103-137 (286)
430 2w0m_A SSO2452; RECA, SSPF, un 89.3 0.22 7.4E-06 45.8 3.4 22 84-105 24-45 (235)
431 2z43_A DNA repair and recombin 89.2 1 3.5E-05 44.2 8.5 24 83-106 107-130 (324)
432 1f2t_A RAD50 ABC-ATPase; DNA d 88.9 0.25 8.4E-06 42.9 3.3 24 84-107 24-47 (149)
433 1m7g_A Adenylylsulfate kinase; 88.9 0.24 8.1E-06 45.4 3.3 24 82-105 24-47 (211)
434 3ake_A Cytidylate kinase; CMP 88.7 0.27 9.4E-06 44.4 3.6 25 85-109 4-28 (208)
435 3gd7_A Fusion complex of cysti 88.7 0.22 7.4E-06 50.6 3.2 22 84-105 48-69 (390)
436 2npi_A Protein CLP1; CLP1-PCF1 88.7 0.2 6.9E-06 52.1 2.9 24 82-105 137-160 (460)
437 3d31_A Sulfate/molybdate ABC t 88.6 0.14 4.9E-06 51.1 1.7 45 210-258 133-178 (348)
438 4eaq_A DTMP kinase, thymidylat 88.5 0.35 1.2E-05 45.1 4.3 27 82-108 25-51 (229)
439 1a7j_A Phosphoribulokinase; tr 88.5 0.16 5.6E-06 49.3 2.0 27 82-108 4-30 (290)
440 1cr0_A DNA primase/helicase; R 88.3 0.28 9.5E-06 47.5 3.5 24 83-106 35-58 (296)
441 1ixz_A ATP-dependent metallopr 88.1 0.28 9.5E-06 46.2 3.4 24 84-107 50-73 (254)
442 1in4_A RUVB, holliday junction 88.0 0.29 9.9E-06 48.5 3.5 27 82-108 50-76 (334)
443 1ihu_A Arsenical pump-driving 87.8 1.3 4.4E-05 47.4 8.7 157 80-281 5-288 (589)
444 1oxx_K GLCV, glucose, ABC tran 87.7 0.14 4.8E-06 51.3 1.0 21 84-104 32-52 (353)
445 2obl_A ESCN; ATPase, hydrolase 87.6 0.32 1.1E-05 48.6 3.5 26 82-107 70-95 (347)
446 1jbk_A CLPB protein; beta barr 87.5 0.38 1.3E-05 42.3 3.7 24 82-105 42-65 (195)
447 1svm_A Large T antigen; AAA+ f 87.5 0.36 1.2E-05 48.8 3.8 27 81-107 167-193 (377)
448 3euj_A Chromosome partition pr 87.5 0.29 1E-05 51.0 3.3 24 84-107 30-53 (483)
449 2cvh_A DNA repair and recombin 87.4 0.33 1.1E-05 44.3 3.3 23 83-105 20-42 (220)
450 3gmt_A Adenylate kinase; ssgci 87.4 0.38 1.3E-05 45.0 3.7 28 82-109 7-34 (230)
451 2h92_A Cytidylate kinase; ross 87.4 0.32 1.1E-05 44.5 3.2 26 83-108 3-28 (219)
452 1xwi_A SKD1 protein; VPS4B, AA 87.2 1.4 4.7E-05 43.3 7.9 25 81-105 43-67 (322)
453 1xp8_A RECA protein, recombina 87.1 0.61 2.1E-05 46.9 5.3 23 83-105 74-96 (366)
454 1n0w_A DNA repair protein RAD5 87.0 0.35 1.2E-05 44.8 3.3 23 83-105 24-46 (243)
455 1iy2_A ATP-dependent metallopr 86.9 0.36 1.2E-05 46.2 3.4 23 85-107 75-97 (278)
456 1ltq_A Polynucleotide kinase; 86.7 0.34 1.2E-05 46.8 3.2 23 84-106 3-25 (301)
457 1lv7_A FTSH; alpha/beta domain 86.6 0.46 1.6E-05 44.8 3.9 25 83-107 45-69 (257)
458 3qf7_A RAD50; ABC-ATPase, ATPa 86.5 0.36 1.2E-05 48.5 3.3 22 85-106 25-46 (365)
459 3hr8_A Protein RECA; alpha and 86.5 1.5 5.1E-05 43.8 7.7 24 82-105 60-83 (356)
460 1yqt_A RNAse L inhibitor; ATP- 86.5 0.33 1.1E-05 51.5 3.0 24 82-105 46-69 (538)
461 1p5z_B DCK, deoxycytidine kina 86.4 0.25 8.7E-06 46.9 2.0 27 81-107 22-48 (263)
462 3b60_A Lipid A export ATP-bind 86.4 0.31 1.1E-05 52.2 2.8 23 83-105 369-391 (582)
463 3b5x_A Lipid A export ATP-bind 86.2 0.33 1.1E-05 52.0 2.9 23 83-105 369-391 (582)
464 2ocp_A DGK, deoxyguanosine kin 86.0 0.44 1.5E-05 44.6 3.3 25 83-107 2-26 (241)
465 2dpy_A FLII, flagellum-specifi 85.8 0.44 1.5E-05 49.1 3.5 25 82-106 156-180 (438)
466 1nlf_A Regulatory protein REPA 85.7 0.46 1.6E-05 45.6 3.4 24 82-105 29-52 (279)
467 3ozx_A RNAse L inhibitor; ATP 85.6 0.38 1.3E-05 51.0 3.0 22 84-105 26-47 (538)
468 2yl4_A ATP-binding cassette SU 85.5 0.31 1.1E-05 52.4 2.3 23 83-105 370-392 (595)
469 3qf4_B Uncharacterized ABC tra 85.5 0.33 1.1E-05 52.2 2.4 24 82-105 380-403 (598)
470 1sxj_A Activator 1 95 kDa subu 85.4 3.3 0.00011 43.4 10.1 26 82-107 76-101 (516)
471 3qks_A DNA double-strand break 85.3 0.46 1.6E-05 43.4 3.0 25 84-108 24-48 (203)
472 2w58_A DNAI, primosome compone 85.1 0.56 1.9E-05 42.3 3.5 22 84-105 55-76 (202)
473 3j16_B RLI1P; ribosome recycli 85.1 0.42 1.4E-05 51.5 3.0 23 83-105 103-125 (608)
474 3bos_A Putative DNA replicatio 85.0 0.56 1.9E-05 43.1 3.6 25 82-106 51-75 (242)
475 1zcb_A G alpha I/13; GTP-bindi 85.0 0.49 1.7E-05 47.5 3.3 25 80-104 30-54 (362)
476 1yqt_A RNAse L inhibitor; ATP- 84.9 0.44 1.5E-05 50.6 3.0 22 84-105 313-334 (538)
477 4a82_A Cystic fibrosis transme 84.7 0.28 9.6E-06 52.5 1.5 24 82-105 366-389 (578)
478 3crm_A TRNA delta(2)-isopenten 84.7 0.63 2.2E-05 45.8 3.9 25 84-108 6-30 (323)
479 2p65_A Hypothetical protein PF 84.5 0.49 1.7E-05 41.5 2.8 25 81-105 41-65 (187)
480 1byi_A Dethiobiotin synthase; 84.3 1.9 6.3E-05 39.4 6.8 68 159-233 107-179 (224)
481 3ozx_A RNAse L inhibitor; ATP 84.0 0.49 1.7E-05 50.2 3.0 21 84-104 295-315 (538)
482 3bk7_A ABC transporter ATP-bin 84.0 0.5 1.7E-05 50.9 3.0 22 84-105 383-404 (607)
483 3bk7_A ABC transporter ATP-bin 84.0 0.49 1.7E-05 50.9 3.0 23 83-105 117-139 (607)
484 3d3q_A TRNA delta(2)-isopenten 83.9 0.68 2.3E-05 46.0 3.7 25 84-108 8-32 (340)
485 3qf4_A ABC transporter, ATP-bi 83.8 0.34 1.2E-05 52.0 1.6 23 83-105 369-391 (587)
486 3t15_A Ribulose bisphosphate c 83.4 0.82 2.8E-05 44.3 4.1 29 80-108 33-61 (293)
487 2dr3_A UPF0273 protein PH0284; 83.4 0.71 2.4E-05 42.7 3.5 22 84-105 24-45 (247)
488 2ga8_A Hypothetical 39.9 kDa p 83.4 0.71 2.4E-05 46.1 3.6 26 82-107 23-48 (359)
489 3exa_A TRNA delta(2)-isopenten 83.0 0.75 2.6E-05 45.1 3.6 26 83-108 3-28 (322)
490 3j16_B RLI1P; ribosome recycli 82.9 0.58 2E-05 50.3 3.0 22 84-105 379-400 (608)
491 4b4t_L 26S protease subunit RP 82.9 1.9 6.6E-05 44.3 6.7 29 80-108 212-240 (437)
492 3foz_A TRNA delta(2)-isopenten 82.7 0.9 3.1E-05 44.4 4.0 27 82-108 9-35 (316)
493 1e69_A Chromosome segregation 82.6 0.62 2.1E-05 45.8 2.8 24 85-108 26-49 (322)
494 2qz4_A Paraplegin; AAA+, SPG7, 82.4 0.89 3E-05 42.6 3.8 27 81-107 37-63 (262)
495 3h4m_A Proteasome-activating n 82.3 0.88 3E-05 43.4 3.8 27 81-107 49-75 (285)
496 3cf0_A Transitional endoplasmi 82.3 0.85 2.9E-05 44.2 3.7 28 81-108 47-74 (301)
497 3b9p_A CG5977-PA, isoform A; A 82.3 0.86 2.9E-05 43.8 3.7 26 82-107 53-78 (297)
498 1pzn_A RAD51, DNA repair and r 82.2 0.8 2.7E-05 45.6 3.5 25 82-106 130-154 (349)
499 2b8t_A Thymidine kinase; deoxy 82.1 1.3 4.4E-05 41.2 4.7 22 83-104 12-33 (223)
500 3vfd_A Spastin; ATPase, microt 82.1 2.3 7.9E-05 42.7 7.0 24 82-105 147-170 (389)
No 1
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=9.9e-84 Score=678.45 Aligned_cols=425 Identities=58% Similarity=0.979 Sum_probs=407.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
..+++++|+++||+|+|||||+++|++.++.+..+.+.++++++.+.|+.++.++|++|..++|+++|+|++.....|++
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
+++.|+|+|||||++|.++|.++++.+|++||||||++|.++++|+..+||++|+.++..+++|++|||+||||+...+|
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~ 172 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 172 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccch
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999988889
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEEEE
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 318 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~i~ 318 (514)
++.+++++.+++..+++.+|+....+++++|+||++|.|+.++.+ .++||+|++|+++|+.++++.+..++|++++|+
T Consensus 173 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~--~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v~ 250 (439)
T 3j2k_7 173 SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD--FCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIV 250 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc--cccccCchHHHHHHHhCCCCccCCCCCeEEEEE
Confidence 999999999999999999998644468999999999999999876 489999999999999999888888999999999
Q ss_pred EEEccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEccCCCCc
Q 010278 319 DKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPV 398 (514)
Q Consensus 319 ~~~~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~~~ 398 (514)
++|++.|++++|+|.+|+|++||.|+++|++..++|++|++++.++++|.|||+|+++|+|++..++++||+|+++++++
T Consensus 251 ~~~~~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~~~~~~ 330 (439)
T 3j2k_7 251 DKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCDPSNLC 330 (439)
T ss_pred EEEcCCCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEECCeEcCEecCCCcceEEEeccchhhcCCcEEecCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cceeEEEEEEEEeccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcceEE
Q 010278 399 AAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSIC 477 (514)
Q Consensus 399 ~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~pi~ 477 (514)
+.++.|+|++.| ++| ++|.+||++++|||+.+++|+|.+|.+++|.+||+..+.+|++|+.|+.+.|+|++.+|+|
T Consensus 331 ~~~~~f~a~v~~---l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~~~~~~v~~~~~~p~~ 407 (439)
T 3j2k_7 331 HSGRTFDVQIVI---IEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTIC 407 (439)
T ss_pred ceeeEEEEEEEE---eCCCCcCCCCCEEEEEEeceEEEEEEEEEEEeecCCchhhhccCcceecCCcEEEEEEEeCCeEE
Confidence 899999999999 556 5699999999999999999999999999999999988889999999999999999999999
Q ss_pred eeecccccccceEEEEeCCeEEEEEEEEecC
Q 010278 478 TEKFADFAQLGRFTLRTEGKTVAVGKVTELP 508 (514)
Q Consensus 478 ~e~~~~~~~lgrfilr~~g~tva~G~I~~v~ 508 (514)
+|+|.+|+.+|||+|||+|+|+|+|+|+++.
T Consensus 408 ~e~~~~~~~~g~f~l~d~~~tv~~G~i~~v~ 438 (439)
T 3j2k_7 408 LETFKDFPQMGRFTLRDEGKTIAIGKVLKLV 438 (439)
T ss_pred EeeccccccCCCEEEEECCceEEEEEEEEec
Confidence 9999999999999999999999999999875
No 2
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=5.9e-80 Score=654.56 Aligned_cols=424 Identities=53% Similarity=0.943 Sum_probs=361.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
.++.++|+++||+|+|||||+++|++.+|.++.+.+.++.+++.+.|++++.++|++|..+.|+++|+|++.+...|.++
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~ 239 (514)
++.++|||||||++|.++++++++.+|++||||||++|.++++|+..+||++|+.++..+++|++|||+||||+..++|+
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 99999999999999999999999999999999999999998888878999999999999999889999999999777899
Q ss_pred HHHHHHHHhhhhhhhhhc-cCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEEEE
Q 010278 240 KERYDEIESKMTPFLKAS-GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 318 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~-g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~i~ 318 (514)
+++++.+.+++..+++.+ |+....+++++|+||++|.|+.++++...++||.|++|+++|+.++.+.++.++||+++|+
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~v~ 279 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIA 279 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHHCCCCHHHHTSCCEEECC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHHHhCCCCcCCCCCCcEEEEE
Confidence 999999999999999988 7742125899999999999999998767899999999999999998887777899999999
Q ss_pred EEEccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC-CeeeeecCCCCeEEEEccCCCcccceeeeEEccCCCC
Q 010278 319 DKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 397 (514)
Q Consensus 319 ~~~~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~-~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~~ 397 (514)
++|++.|++++|+|.+|+|++||.|.++|++..++|++|+++ +.++++|.||++|+++|+| +..++++||+|++++++
T Consensus 280 ~~~~~~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g-~~~~i~rG~vl~~~~~~ 358 (467)
T 1r5b_A 280 SKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTGYVLTSTKNP 358 (467)
T ss_dssp EEEESSSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECTTCCEESEEETTCEEEEEEES-CCTTCCTTCEEECSSSC
T ss_pred EEEeCCCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEeccCCcEeeEEcCCCEEEEEEec-cHhhCCceEEEeCCCCC
Confidence 999999999999999999999999999999999999999998 9999999999999999999 88899999999999989
Q ss_pred ccceeEEEEEEEEeccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcceE
Q 010278 398 VAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSI 476 (514)
Q Consensus 398 ~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~pi 476 (514)
+..+++|+|++.|| ++ ++|..||++++|+|+.+++|+|..|.+++|. +|+..+++|++|++|+.+.|+|+|.+|+
T Consensus 359 ~~~~~~f~a~v~~l---~~~~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~-~~~~~~~~~~~l~~g~~~~v~l~~~~p~ 434 (467)
T 1r5b_A 359 VHATTRFIAQIAIL---ELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPV 434 (467)
T ss_dssp CCEEEEEEEEEEEC---SSCCCBSSCCCBEEESSSCCCCBEESSCCCCCCS-SCCCCSSCCSBCCTTCBCCEEEEEEEEE
T ss_pred CccceEEEEEEEEe---CCCCccCCCCEEEEEEeCCEEEEEEEEEEEEecC-CccccccCccccCCCCEEEEEEEECcEE
Confidence 99999999999995 44 6799999999999999999999999889998 8888888899999999999999999999
Q ss_pred EeeecccccccceEEEEeCCeEEEEEEEEecC
Q 010278 477 CTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 508 (514)
Q Consensus 477 ~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~ 508 (514)
|+++|.+|+.||||+||++|+|+|+|+|+++.
T Consensus 435 ~~~~~~~~~~~grf~lrd~~~Tv~~G~i~~~~ 466 (467)
T 1r5b_A 435 CMERFEDYQYMGRFTLRDQGTTVAVGKVVKIL 466 (467)
T ss_dssp ECCCTTTCHHHHEEEEECSSSCEEEEEEEEEE
T ss_pred EEEEcCcCCCCccEEEEECCeEEEEEEEEEec
Confidence 99999999999999999999999999999875
No 3
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=1.3e-75 Score=619.73 Aligned_cols=423 Identities=38% Similarity=0.691 Sum_probs=396.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
.++.++|+++||+|+|||||+++|++.++.++.+.+.++++++.+.|+.++.+++++|..+.|+++|+|++.....|.+.
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~ 239 (514)
++.++|||||||++|.+++.++++.+|++||||||.+|.++++|+...|+++|+.++..+++|++|||+||||+ .+|+
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl--~~~~ 161 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDS--VKWD 161 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGG--GTTC
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEcccc--ccCC
Confidence 99999999999999999999999999999999999999888788777899999999999999889999999999 6778
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCC------------cccHHHHhhhccCCCC
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN------------GPCLFEALDRIEITPR 307 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~------------g~tL~~~l~~l~~~~~ 307 (514)
+++++.+.+++..+++.+++.. .+++++|+||++|.|+.++... ++||. |++|++.|+.+++|.+
T Consensus 162 ~~~~~~i~~~~~~~l~~~g~~~-~~~~~i~vSA~~g~nv~~~~~~--~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~~p~~ 238 (458)
T 1f60_A 162 ESRFQEIVKETSNFIKKVGYNP-KTVPFVPISGWNGDNMIEATTN--APWYKGWEKETKAGVVKGKTLLEAIDAIEQPSR 238 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCG-GGCCEEECCTTTCBTTTBCCSS--CTTCCCEEEECSSSEEEESSHHHHHHTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-cCceEEEeecccCcCccccccc--CchhhcccccccccccchHHHHHHhhccCCCcc
Confidence 8899999999999999998752 2479999999999999988654 89997 6789999999988888
Q ss_pred CCCCCceEEEEEEEc--cCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccc
Q 010278 308 DPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDI 385 (514)
Q Consensus 308 ~~~~p~~~~i~~~~~--~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i 385 (514)
..+.|++++|.++|+ +.|+|++|+|++|.|++||+|.++|.+..++|++|++++.++.+|.||++|++.|+|++..++
T Consensus 239 ~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi~~~~i 318 (458)
T 1f60_A 239 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEI 318 (458)
T ss_dssp CTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEETTEECSCBCTTCEEEEEESSCCTTTS
T ss_pred cCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEECCeEEEEEcCCCEEEEEEcCCccccc
Confidence 889999999999995 899999999999999999999999999999999999999999999999999999999998999
Q ss_pred eeeeEEccCCC-CccceeEEEEEEEEeccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCC
Q 010278 386 LSGFVLSSVAK-PVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNG 463 (514)
Q Consensus 386 ~~G~vl~~~~~-~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g 463 (514)
++||+|+++++ ++..+++|+|++.|| ++ .+|..||++++|+|+.+++|+|..|.+++|.+|++..+++|++|++|
T Consensus 319 ~rG~vl~~~~~~~~~~~~~f~a~v~~l---~~~~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l~~g 395 (458)
T 1f60_A 319 RRGNVCGDAKNDPPKGCASFNATVIVL---NHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSG 395 (458)
T ss_dssp CTTCEEEETTSSCCCCCSEEEEEEEEC---SCSCCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTT
T ss_pred CceeEEecCCCCCCceeeEEEEEEEEe---CCCCCCCCCCEEEEEeccceEEEEEEEEEeEecCccccccccCccccCCC
Confidence 99999999875 889999999999995 44 78999999999999999999999999999999999888899999999
Q ss_pred CEEEEEEEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecCCC
Q 010278 464 AIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 510 (514)
Q Consensus 464 ~~a~v~~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~~~ 510 (514)
+.+.|+|+|.+|+|+++|.+|+.+|||+||+.|+|+|+|+|+++.+.
T Consensus 396 ~~~~v~~~~~~p~~~~~~~~~~~~grf~lr~~~~tv~~G~v~~~~~~ 442 (458)
T 1f60_A 396 DAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKT 442 (458)
T ss_dssp CEEEEEEEESSCCCCCCTTTCGGGSEEEEEETTEEEEEEEEEEEEC-
T ss_pred CEEEEEEEECCeEEEecCccCCCCCcEEEEECCeEEEEEEEEeeccc
Confidence 99999999999999999999999999999999999999999998765
No 4
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-76 Score=641.54 Aligned_cols=424 Identities=33% Similarity=0.578 Sum_probs=395.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
..+++++|+++||+|+|||||+++|++..+.+..+.+.++.+.+.+.|++++.++|++|....++.+|+|++.....+.+
T Consensus 163 ~~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~ 242 (611)
T 3izq_1 163 SALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST 242 (611)
T ss_dssp CCCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
.++.++|||||||++|.+++..+++.+|++||||||+.|.++++++..+|+++|+.++..++++++|||+||||+ .+|
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl--~~~ 320 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN--VDW 320 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTT--TTT
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccc--cch
Confidence 999999999999999999999999999999999999999999888888999999999999999989999999999 778
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccC-CCCCCCcccHHHHhhhc--cC----CCCCCCC
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKS-LCPWWNGPCLFEALDRI--EI----TPRDPNG 311 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~-~~~w~~g~tL~~~l~~l--~~----~~~~~~~ 311 (514)
++.+++++.+++..+++.+|+.. ..++++|+||++|.|+.++.... .++||.|++|+++|+.+ .. |.+..+.
T Consensus 321 ~~~~~~ei~~~l~~~l~~~g~~~-~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~ 399 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLVDIGFFE-DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDD 399 (611)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCG-GGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCS
T ss_pred hHHHHHHHHHHHHHHHHhhcccc-cCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCccccccc
Confidence 88999999999999999998852 25799999999999999986543 38999999999999987 22 3456789
Q ss_pred CceEEEEEEEc-----cCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC--------CeeeeecCCCCeEEEEcc
Q 010278 312 PFRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD--------DNRVRHAGPGENLRIRLS 378 (514)
Q Consensus 312 p~~~~i~~~~~-----~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~--------~~~v~~a~aG~~v~~~l~ 378 (514)
|++++|.++|+ +.|+|++|+|.+|+|++||.|+++|++..++|++|+++ +.++++|.||++|+|+|+
T Consensus 400 p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~ 479 (611)
T 3izq_1 400 PFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLR 479 (611)
T ss_dssp CCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEES
T ss_pred chhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccccccceecCCCcceEEee
Confidence 99999999995 57999999999999999999999999999999999998 489999999999999999
Q ss_pred CCCcccceeeeEEccCCC-CccceeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccc
Q 010278 379 GIEEEDILSGFVLSSVAK-PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKV 457 (514)
Q Consensus 379 ~~~~~~i~~G~vl~~~~~-~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~ 457 (514)
+++..++++||+|+++++ ++..++.|+|++.||+ +..+|.+||++++|||+.+++|+|..|.+++|.+|++. +++|
T Consensus 480 ~~~~~di~rGdvl~~~~~~~~~~~~~f~a~v~~l~--~~~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~-~~~~ 556 (611)
T 3izq_1 480 KAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFD--MNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KKKI 556 (611)
T ss_dssp SCCTTSCCTTCEEBCSTTCSCCCBSCEEEEEEECS--CSSCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBC-TTCS
T ss_pred eccHhhCcceEEccCCCCCCCceeeEEEEEEEEEC--CCCCCCCCCEEEEEECCeEeeEEeeeeeeeeccccccc-ccCc
Confidence 999999999999999997 8999999999999953 13789999999999999999999999999999999987 7789
Q ss_pred ccccCCCEEEEEEEE---cceEEeeecccccccceEEEEeCCeEEEEEEEEecC
Q 010278 458 LFVKNGAIVVCRIQV---NNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 508 (514)
Q Consensus 458 ~~l~~g~~a~v~~~~---~~pi~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~ 508 (514)
++|++|+.|.|+|++ .+|+|+++|.+++.+|||+||+.|+|||+|+|+++.
T Consensus 557 ~~l~~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~~~~Tva~G~i~~v~ 610 (611)
T 3izq_1 557 RHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEIT 610 (611)
T ss_dssp CSSSSCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred cccCCCCEEEEEEEECCCCCceEEeecccCCCCCcEEEEeCCCEEEEEEEEEec
Confidence 999999999999999 789999999999999999999999999999999875
No 5
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=4.8e-75 Score=620.33 Aligned_cols=424 Identities=33% Similarity=0.572 Sum_probs=365.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
.++.++|+++||+|+|||||+++|++.++.+..+.+.++.+.+.+.|++++.++|++|....++.+|+|++.....+.+.
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~ 239 (514)
++.++|+|||||++|.+++..+++.+|++|||||++.|.++++++..+|+++|+.++..++++++|||+||||+ .+|+
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl--~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN--VDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGG--GTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCc--ccch
Confidence 99999999999999999999999999999999999999998888778999999999999998889999999999 7788
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccC-CCCCCCcccHHHHhhhc----cC--CCCCCCCC
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKS-LCPWWNGPCLFEALDRI----EI--TPRDPNGP 312 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~-~~~w~~g~tL~~~l~~l----~~--~~~~~~~p 312 (514)
+.+++++.+++..+++.+|+.. ..++++|+||++|.|+.++.... .++||.|++|+++|+.+ +. |.+..+.|
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~-~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p 266 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFE-DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDP 266 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCG-GGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSC
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-ccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCc
Confidence 8999999999999999998852 35899999999999999876532 27899999999998876 22 55678899
Q ss_pred ceEEEEEEEc-----cCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECC--------eeeeecCCCCeEEEEccC
Q 010278 313 FRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDD--------NRVRHAGPGENLRIRLSG 379 (514)
Q Consensus 313 ~~~~i~~~~~-----~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~--------~~v~~a~aG~~v~~~l~~ 379 (514)
++++|+++|+ +.|+|++|+|.+|+|++||.|.++|++..++|++|++++ .++++|.|||+|+|+|++
T Consensus 267 ~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~ 346 (483)
T 3p26_A 267 FLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRK 346 (483)
T ss_dssp CEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-----CCEESCEETTCEEEEEEES
T ss_pred eEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccccccccccccEECCCCEEEEEEEe
Confidence 9999999994 579999999999999999999999999999999999994 899999999999999999
Q ss_pred CCcccceeeeEEccCCC-CccceeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccc
Q 010278 380 IEEEDILSGFVLSSVAK-PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVL 458 (514)
Q Consensus 380 ~~~~~i~~G~vl~~~~~-~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~ 458 (514)
++..++++||+|+++++ ++..++.|+|++.||+ +..+|.+||++++|||+.+++|+|.+|.+++|.+|++. +++|+
T Consensus 347 ~~~~di~rG~vl~~~~~~~~~~~~~f~a~v~~l~--~~~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~~~~-~~~~~ 423 (483)
T 3p26_A 347 AYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFD--MNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KKKIR 423 (483)
T ss_dssp CCGGGCCTTCEEECTTCCCCEECSEEEEEEEECS--CSSCBCTTCEEEEEETTEEEEEEEEEEEEEEEETTEEC-CSCCS
T ss_pred cccccCCceEEEEcCCCCCCceeeEEEEEEEEEC--CCCCCCCCCEEEEEeCceEEEEEEEEEEEEEcCCCccc-ccCcc
Confidence 99999999999999987 8999999999999953 13789999999999999999999999999999999876 67899
Q ss_pred cccCCCEEEEEEEE---cceEEeeecccccccceEEEEeCCeEEEEEEEEecCC
Q 010278 459 FVKNGAIVVCRIQV---NNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 509 (514)
Q Consensus 459 ~l~~g~~a~v~~~~---~~pi~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~~ 509 (514)
+|++|+.+.|+|++ .+|+|+|+|.+|+.+|||+||++|+|||+|+|+++..
T Consensus 424 ~l~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~~~~tv~~G~i~~~~~ 477 (483)
T 3p26_A 424 HLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQ 477 (483)
T ss_dssp CBCSSCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEETTEEEEEEEEEEECC
T ss_pred CcCCCCEEEEEEEECCCCCcEEEEecccCccCCCEEEEeCCCEEEEEEEEEecc
Confidence 99999999999999 8899999999999999999999999999999998764
No 6
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=9.3e-75 Score=610.31 Aligned_cols=426 Identities=38% Similarity=0.705 Sum_probs=386.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
.++.++|+++||+|+|||||+++|++.++.++.+.+.+++.++.+.|+.++.++|++|..++|+++|+|++.....+++.
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~ 239 (514)
++.++|||||||++|.+++.++++.+|++||||||.+|.|++.+...+|+++|+.++..++++++||++||||+...+|+
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 99999999999999999999999999999999999999887776677899999999999999779999999999655588
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEEEEE
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIID 319 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~i~~ 319 (514)
+++++.+.+++..+++.+++.. ..++++|+||++|.|+.++.+. ++||.|++|++.|+.+++|.+..++|++++|++
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~-~~~~~i~iSA~~g~~v~e~~~~--~~~~~g~~Ll~~l~~~~~p~~~~~~~~~~~v~~ 239 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNT-NKVRFVPVVAPSGDNITHKSEN--MKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQD 239 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC-TTCEEEECBTTTTBTTTBCCSS--CTTCCSCCHHHHHTTCCCCCCGGGSCCBEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-CCceEEEeecccCccccccccc--cccccchhHHHHHhccCCCCCCCCCCeEEEEEE
Confidence 8899999999999999988752 2479999999999999998764 799999999999999888777778999999999
Q ss_pred EEc--cCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEccCCCC
Q 010278 320 KFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 397 (514)
Q Consensus 320 ~~~--~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~~ 397 (514)
+|+ +.|++++|+|.+|+|++||.|+++|.+...+|++|++++.++++|.||++|+++|+|++..++++||+|++++++
T Consensus 240 v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~~~~~ 319 (435)
T 1jny_A 240 VYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNP 319 (435)
T ss_dssp EEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTTCEEECTTSC
T ss_pred EEEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEECCcEEeEEcCCCEEEEEEecCCHHHcCCccEecCCCCC
Confidence 995 789999999999999999999999999999999999999999999999999999999998999999999999888
Q ss_pred ccceeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcceEE
Q 010278 398 VAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSIC 477 (514)
Q Consensus 398 ~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~pi~ 477 (514)
+..+.+|.|++.||+. +.+|..||++++|+|+.+++|+|..|.+++|.+|++..+++|++|++|+.+.|+|+|.+|+|
T Consensus 320 ~~~~~~f~a~v~~l~~--~~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~p~~ 397 (435)
T 1jny_A 320 PTVADEFTARIIVVWH--PTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLC 397 (435)
T ss_dssp CCEESEEEEEEEECCC--SSCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEESSCEE
T ss_pred ceEeEEEEEEEEEECC--CCcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEEEEEECceEE
Confidence 9999999999999532 37899999999999999999999999999999999988889999999999999999999999
Q ss_pred eeecccccccceEEEEeCCeEEEEEEEEecCCC
Q 010278 478 TEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 510 (514)
Q Consensus 478 ~e~~~~~~~lgrfilr~~g~tva~G~I~~v~~~ 510 (514)
+++|.+++.+|||+||+.|+|+|+|+|+++.+.
T Consensus 398 ~~~~~~~~~~grf~lr~~~~tv~~G~i~~~~~~ 430 (435)
T 1jny_A 398 VEKYNEFPPLGRFAMRDMGKTVGVGIIVDVKPA 430 (435)
T ss_dssp CCCTTTSGGGTEEEEEETTEEEEEEEEEEEEC-
T ss_pred EecCCcCCcCccEEEEECCeEEEEEEEeeecCc
Confidence 999999999999999999999999999998754
No 7
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.6e-75 Score=631.79 Aligned_cols=415 Identities=33% Similarity=0.598 Sum_probs=328.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
..+++++|+++||+|+|||||+++|++.++.+..+.+.++.+.+.+.|++++.++|++|..+.|+.+|+|++.....|.+
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
.++.|+|||||||++|+++|+++++.+|++||||||++|.|++++...+||++|+.++..+++|++|||+||||+ .+|
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl--~~~ 330 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDL--MSW 330 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGG--GTT
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccc--ccc
Confidence 999999999999999999999999999999999999999998888556999999999999999889999999999 778
Q ss_pred hHHHHHHHHhhhhhhh-hhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEEE
Q 010278 239 SKERYDEIESKMTPFL-KASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 317 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l-~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~i 317 (514)
++.+++.+..++..++ +.+|+.. ..++++|+||++|.|+.++.....++||.|++|++.|..+.++.+..+.||+++|
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g~~~-~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~pp~~~~~~p~r~~v 409 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVGFKT-SNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPPEKPYRKPLRLSI 409 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCG-GGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCCCSCTTTSCCEEEE
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCc-cceEEEEEecccCcccccccccccccccchHHHHHHHHhhccccccccccchhee
Confidence 8899999999999999 8888852 3579999999999999987766678999999999999988777788899999999
Q ss_pred EEEEc-cCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeee-ecCCCCeEEEEccCCCcccceeeeEEccCC
Q 010278 318 IDKFK-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVR-HAGPGENLRIRLSGIEEEDILSGFVLSSVA 395 (514)
Q Consensus 318 ~~~~~-~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~-~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~ 395 (514)
+++|+ +.|++++|+|.+|+|++||.|.++|++..++|++|++++.+++ +|.||++|+|+|.|++..++++||+|++++
T Consensus 410 ~~v~~~~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~~ 489 (592)
T 3mca_A 410 DDVYRSPRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYE 489 (592)
T ss_dssp EEEEEETTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEECSS
T ss_pred eEEEecCCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEcCccCcceecCCCEEEEEEccccccccceEEEeccCC
Confidence 99985 6789999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCccceeEEEEEEEEeccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEE-Ec
Q 010278 396 KPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQ-VN 473 (514)
Q Consensus 396 ~~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~-~~ 473 (514)
.++..++.|+|++.|| .+ .+|..||++++|||+.+++|+| .|.+ ..+++|++|++|+.+.|+|+ +.
T Consensus 490 ~~~~~~~~f~a~v~~~---~~~~pi~~g~~~~l~~~t~~~~~~i-~l~~--------~~~~~~~~l~~gd~~~v~l~fl~ 557 (592)
T 3mca_A 490 NPVRRVRSFVAEIQTF---DIHGPILSGSTLVLHLGRTVTSVSL-KIVT--------VNNKRSRHIASRKRALVRISFLD 557 (592)
T ss_dssp SCCEEESEEEEEEEEC---SCSSCEETTEEEEEECSSCEEEEEE-EEEE--------SSSSCCSEECSSCEEEEEEEESS
T ss_pred CCccccCeEEEEEEEE---CCCccCCCCCEEEEEEcCcEEEEEE-EEEe--------ccccchhccCCCCEEEEEEEECC
Confidence 8889999999999995 44 7899999999999999999999 7765 12456889999999999999 99
Q ss_pred ceEEeeecccccccceEEEEeCCeEEEEEEEEecC
Q 010278 474 NSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 508 (514)
Q Consensus 474 ~pi~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~ 508 (514)
+|+|+|+|.+|+.+|||+||+.|+|||+|+|+++.
T Consensus 558 ~p~~~e~~~~~~~~~rfilr~~~~Tv~~G~i~~v~ 592 (592)
T 3mca_A 558 GLFPLCLAEECPALGRFILRRSGDTVAAGIVKELC 592 (592)
T ss_dssp SCEEECCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred CcEEEEeccCCCCCCeEEEEECCcEEEEEEEEEcC
Confidence 99999999999999999999999999999999863
No 8
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=4.8e-69 Score=566.84 Aligned_cols=407 Identities=25% Similarity=0.433 Sum_probs=352.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCc--cchhhhhhccCchhhhhcccEEEeeeEEEE
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSR--ESWYMAYIMDTNEEERIKGKTVEVGRAHFE 157 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~--~s~~~~~~~d~~~~e~~~giT~~~~~~~~~ 157 (514)
.++.++|+++||+|+|||||+++|++..+.+..+.+.++.+.....|. .++.+++.+|..+.|+++|+|++.+...+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 356789999999999999999999999988877766555555444443 457788899999999999999999999999
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010278 158 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 158 ~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~ 237 (514)
+.++.++|+|||||++|.+++.++++.+|++|||||+++|.+ .|+++|+.++..++++++|+|+||+|+ .+
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-------~qt~~~l~~~~~~~~~~iIvviNK~Dl--~~ 171 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-------TQTRRHSYIASLLGIKHIVVAINKMDL--NG 171 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-------HHHHHHHHHHHHTTCCEEEEEEECTTT--TT
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEEcCcC--Cc
Confidence 999999999999999999999999999999999999999965 699999999999999889999999999 66
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEEE
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 317 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~i 317 (514)
|++++++++.+++..+++.+++. ...++++|+||++|.|+.++++. ++||.|++|.++|+.++.+.+..+.|++++|
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~g~~-~~~~~~i~vSA~~g~gi~~~~~~--~~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v 248 (434)
T 1zun_B 172 FDERVFESIKADYLKFAEGIAFK-PTTMAFVPMSALKGDNVVNKSER--SPWYAGQSLMEILETVEIASDRNYTDLRFPV 248 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTCC-CSEEEEEECCTTTCTTTSSCCTT--CTTCCSCCTTHHHHHSCCTTCCCSSSCEEEC
T ss_pred ccHHHHHHHHHHHHHHHHHhCCC-ccCceEEEEeccCCCCccccccc--CccccCchHHHHHhcCCCcccCCCCCcEEEE
Confidence 77788888999999999988732 12579999999999999998764 8999999999999999888888889999999
Q ss_pred EEEEc--cCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEccCC
Q 010278 318 IDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 395 (514)
Q Consensus 318 ~~~~~--~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~ 395 (514)
+++++ +.|+.+.|+|.+|+|++||.|.++|++..++|++|++++.++++|.||++|++++++ ..++++||+|++++
T Consensus 249 ~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~--~~~i~~G~~l~~~~ 326 (434)
T 1zun_B 249 QYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGPGQAVTLTMED--EIDISRGDLLVHAD 326 (434)
T ss_dssp CEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETTEEESEECTTCEEEEEESS--CCCCCTTCEEEETT
T ss_pred EEEeccCCCceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcCcceeEecCCCEEEEEeCC--ccccCCccEEECCC
Confidence 99984 467789999999999999999999999999999999999999999999999999984 45799999999999
Q ss_pred CCccceeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcce
Q 010278 396 KPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNS 475 (514)
Q Consensus 396 ~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~p 475 (514)
++|..+++|+|++.|| +..+|..||++++|+|+.++.|+|..+.+.+|.++++ ++++++|++|+.+.|+|+|.+|
T Consensus 327 ~~~~~~~~f~a~~~~l---~~~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~--~~~~~~l~~~d~~~v~~~~~~p 401 (434)
T 1zun_B 327 NVPQVSDAFDAMLVWM---AEEPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLE--EGPASSLQLNEIGRVKVSLDAP 401 (434)
T ss_dssp SCCCEEEEEEEEEEEC---CSSCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCC--CCCCSCBCTTCEEEEEEEEEEE
T ss_pred CCCCcccEEEEEEEEe---ccccCCCCCEEEEEEcCCEEEEEEEEEeeeecccccc--ccCccEeCCCCEEEEEEEECCe
Confidence 8889999999999994 4568999999999999999999999999999999987 4678999999999999999999
Q ss_pred EEeeecccccccceEEEEeC--CeEEEEEEEE
Q 010278 476 ICTEKFADFAQLGRFTLRTE--GKTVAVGKVT 505 (514)
Q Consensus 476 i~~e~~~~~~~lgrfilr~~--g~tva~G~I~ 505 (514)
+|+++|.+++.||||+|||. |+|+|+|+|+
T Consensus 402 ~~~~~~~~~~~~grf~l~d~~~~~tv~~G~i~ 433 (434)
T 1zun_B 402 IALDGYSSNRTTGAFIVIDRLTNGTVAAGMII 433 (434)
T ss_dssp EECCCTTTCTTTTEEEEECTTTCCEEEEEEEE
T ss_pred EEEcccccCCccceEEEEECCCCcEEEEEEEe
Confidence 99999999999999999975 8999999996
No 9
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=9.3e-62 Score=505.60 Aligned_cols=378 Identities=29% Similarity=0.441 Sum_probs=326.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
++.++|+++||+|+|||||+++|++... ..|+..+...+.+|....|+++|+|++.....+.+.+
T Consensus 1 k~~~~I~iiG~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 65 (397)
T 1d2e_A 1 KPHVNVGTIGHVDHGKTTLTAAITKILA---------------EGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA 65 (397)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHH---------------HTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS
T ss_pred CCeEEEEEEeCCCCCHHHHHHHHhChhh---------------hcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCC
Confidence 3578999999999999999999965321 1233333334457888899999999999998899899
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~ 240 (514)
+.++|+|||||++|.+++.++++.+|++|||||+++|.+ .||++|+.++..+++|++|+++||||+ .+ ++
T Consensus 66 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-------~qt~e~l~~~~~~~vp~iivviNK~Dl--~~-~~ 135 (397)
T 1d2e_A 66 RHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPM-------PQTREHLLLARQIGVEHVVVYVNKADA--VQ-DS 135 (397)
T ss_dssp CEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSC-------HHHHHHHHHHHHTTCCCEEEEEECGGG--CS-CH
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCCeEEEEEECccc--CC-CH
Confidence 999999999999999999999999999999999999965 699999999999999977899999999 43 45
Q ss_pred HHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCc--ccHHHHhhh-ccCCCCCCCCCceEEE
Q 010278 241 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG--PCLFEALDR-IEITPRDPNGPFRMPI 317 (514)
Q Consensus 241 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g--~tL~~~l~~-l~~~~~~~~~p~~~~i 317 (514)
+.++.+.+++..+++.+++. ...++++|+||++|.|.. .++||.| ..|++.|.. ++.|.++.++|++++|
T Consensus 136 ~~~~~~~~~~~~~l~~~~~~-~~~~~~i~~SA~~g~n~~------~~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v 208 (397)
T 1d2e_A 136 EMVELVELEIRELLTEFGYK-GEETPIIVGSALCALEQR------DPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPV 208 (397)
T ss_dssp HHHHHHHHHHHHHHHHTTSC-TTTSCEEECCHHHHHTTC------CTTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCC-cccCcEEEeehhhccccc------CCCccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEE
Confidence 66777888899999988874 125799999999999842 2689976 567776655 7777888889999999
Q ss_pred EEEE--ccCCeEEEEEEeeeeeecCCEEEEecCC--cEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEcc
Q 010278 318 IDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 393 (514)
Q Consensus 318 ~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~--~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~ 393 (514)
+++| +++|+|++|+|.+|+|++||.|.+.|.+ ..++|++|++++.++++|.|||+|+++|+|++..++++||+|++
T Consensus 209 ~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~ 288 (397)
T 1d2e_A 209 ESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAK 288 (397)
T ss_dssp CEEEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEETTEEESEEETTCEEEEEESSCCGGGCCTTCEEES
T ss_pred EEEEEeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEECCcccCEecCCCceEEEecccchhccCceeEEeC
Confidence 9998 5899999999999999999999999975 78999999999999999999999999999999999999999999
Q ss_pred CCCCccceeEEEEEEEEecccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEE
Q 010278 394 VAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRI 470 (514)
Q Consensus 394 ~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~ 470 (514)
++ ++.++++|+|++.||+... +.+|..||++++|+++.+++|+|. +. ..+.+|++|+.+.|+|
T Consensus 289 ~~-~~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-l~------------~~~~~l~~~~~~~v~~ 354 (397)
T 1d2e_A 289 PG-SIQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRII-LP------------PGKELAMPGEDLKLTL 354 (397)
T ss_dssp TT-SCCCEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC------------SSCCCBCTTCEEEEEE
T ss_pred CC-CCCcccEEEEEEEEeccccccCccccCCCCEEEEEEecCEEEEEEE-Ec------------CCcccccCCCEEEEEE
Confidence 88 5678999999999965321 258999999999999999999987 31 1256799999999999
Q ss_pred EEcceEEeeecccccccceEEEEeCCeEEEEEEEEecCCC
Q 010278 471 QVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 510 (514)
Q Consensus 471 ~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~~~ 510 (514)
+|.+|+|++.+ +||+||+.++|+|+|+|+++.+.
T Consensus 355 ~~~~p~~~~~~------~r~~lr~~~~ti~~G~i~~~~~~ 388 (397)
T 1d2e_A 355 ILRQPMILEKG------QRFTLRDGNRTIGTGLVTDTPAM 388 (397)
T ss_dssp EEEEEECCCTT------CEEEEEETTEEEEEEEEEECCCC
T ss_pred EECCeEEEccC------CeEEEEeCCeEEEEEEEeecccC
Confidence 99999999986 69999999999999999998764
No 10
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=2.5e-61 Score=503.97 Aligned_cols=384 Identities=29% Similarity=0.462 Sum_probs=327.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCc-cchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSR-ESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~-~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
.++.++|+++||+|+|||||+++|++... +.|+ ..+...+.+|....|+.+|+|++.....+.+
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 72 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAA---------------AENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 72 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHH---------------HSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhh---------------hcCccccccchhhccCCHHHHHcCCCEEeeeeEecc
Confidence 45679999999999999999999965321 1222 1222233688899999999999999889999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
.++.++|+|||||++|.+++.++++.+|++|||||+++|.+ .|+++|+.++..+++|++|+++||||+ .+
T Consensus 73 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-------~qt~~~l~~~~~~~ip~iivviNK~Dl--~~- 142 (405)
T 2c78_A 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-------PQTREHILLARQVGVPYIVVFMNKVDM--VD- 142 (405)
T ss_dssp SSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-------HHHHHHHHHHHHTTCCCEEEEEECGGG--CC-
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCEEEEEEECccc--cC-
Confidence 99999999999999999999999999999999999999865 599999999999999988899999999 43
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc---cCCCCCCCc-ccHHHHhhh-ccCCCCCCCCCc
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD---KSLCPWWNG-PCLFEALDR-IEITPRDPNGPF 313 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~---~~~~~w~~g-~tL~~~l~~-l~~~~~~~~~p~ 313 (514)
+++.++.+.+++..+++.+++. ...++++++||++|.|+.+... ...++||.+ ..|++.|.. ++.|.+..+.|+
T Consensus 143 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~ 221 (405)
T 2c78_A 143 DPELLDLVEMEVRDLLNQYEFP-GDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPF 221 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSC-TTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhccc-ccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCc
Confidence 4556777888888899888874 1257999999999999654321 123678875 456676655 777778889999
Q ss_pred eEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCC---cEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceee
Q 010278 314 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 388 (514)
Q Consensus 314 ~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~---~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G 388 (514)
+++|+++| +++|++++|+|.+|+|++||.|.++|.+ ..++|++|++++.++++|.|||+|++.|+|++..++++|
T Consensus 222 ~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~G 301 (405)
T 2c78_A 222 LMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERG 301 (405)
T ss_dssp EEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESSCCTTTCCTT
T ss_pred EEEEEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEEEEECCCcHhhcCce
Confidence 99999998 5899999999999999999999999987 689999999999999999999999999999999999999
Q ss_pred eEEccCCCCccceeEEEEEEEEeccc---ccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCE
Q 010278 389 FVLSSVAKPVAAVTEFIAQLQILELL---DNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAI 465 (514)
Q Consensus 389 ~vl~~~~~~~~~~~~f~a~i~~~~~~---~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~ 465 (514)
|+|++++ ++.++++|+|++.||+.. ++.+|..||++++|+++.+++|+|. +. ..+.+|++|+.
T Consensus 302 ~~l~~~~-~~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-~~------------~~~~~l~~~~~ 367 (405)
T 2c78_A 302 QVLAKPG-SITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQ-LP------------PGVEMVMPGDN 367 (405)
T ss_dssp CEEESTT-SSEEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC------------TTCCCBCTTCE
T ss_pred EEEEcCC-CCceeEEEEEEEEEecccCCCccccccCCceEEEEEcccEEEEEEE-Ec------------cCccccCCCCE
Confidence 9999988 577899999999996532 1258999999999999999999987 31 12567999999
Q ss_pred EEEEEEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecCC
Q 010278 466 VVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 509 (514)
Q Consensus 466 a~v~~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~~ 509 (514)
+.|+|+|.+|+|++.| +||+||+.|+|+|+|+|+++.+
T Consensus 368 ~~v~~~~~~p~~~~~~------~rf~lr~~~~ti~~G~i~~~~~ 405 (405)
T 2c78_A 368 VTFTVELIKPVALEEG------LRFAIREGGRTVGAGVVTKILE 405 (405)
T ss_dssp EEEEEEEEEEEEECTT------CEEEEEETTEEEEEEEEEEECC
T ss_pred EEEEEEECceEEEccC------CEEEEEcCCeEEEEEEEEeccC
Confidence 9999999999999987 7999999999999999998753
No 11
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=3.7e-57 Score=506.80 Aligned_cols=380 Identities=29% Similarity=0.425 Sum_probs=310.2
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
..++.++|+++||+|+|||||+++|++... +.|+..+...+.+|..+.|+.+|+|++.....+.+
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~---------------~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~ 356 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLA---------------KTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 356 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHH---------------HHSCC---------------------CCSCEEEEC
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhc---------------cccccccccccccccccccccCceeEEEEEEEEcC
Confidence 456789999999999999999999965321 11222222223678888999999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
.++.++|||||||++|.+++.++++.+|++|||||+++|.+ .||++|+.++..+++|++|||+||||+ .+
T Consensus 357 ~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~-------~QTrEhL~ll~~lgIP~IIVVINKiDL--v~- 426 (1289)
T 3avx_A 357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-------PQTREHILLGRQVGVPYIIVFLNKCDM--VD- 426 (1289)
T ss_dssp SSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSC-------TTHHHHHHHHHHHTCSCEEEEEECCTT--CC-
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCc-------HHHHHHHHHHHHcCCCeEEEEEeeccc--cc-
Confidence 99999999999999999999999999999999999999965 699999999999999988899999999 43
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCc-ccHHHHhhh-ccCCCCCCCCCceEE
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRMP 316 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g-~tL~~~l~~-l~~~~~~~~~p~~~~ 316 (514)
+++.++.+.+++..+++.+++. ...++++|+||++|.+- .++||.| ..|++.|.. ++.|.+..++|++++
T Consensus 427 d~e~le~i~eEi~elLk~~G~~-~~~vp~IpvSAktG~ng-------~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~p 498 (1289)
T 3avx_A 427 DEELLELVEMEVRELLSQYDFP-GDDTPIVRGSALKALEG-------DAEWEAKILELAGFLDSYIPEPERAIDKPFLLP 498 (1289)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSC-TTTCCEEECCSTTTTTC-------CHHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEE
T ss_pred chhhHHHHHHHHHHHHHhcccc-ccceeEEEEEeccCCCC-------CccccccchhhHhHHhhhcCCCccccccceeee
Confidence 4566778888899999988874 23579999999999541 1357765 346666654 677777788999999
Q ss_pred EEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCC--cEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEc
Q 010278 317 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 392 (514)
Q Consensus 317 i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~--~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~ 392 (514)
|+++| +++|+|++|+|.+|+|++||.|.++|.+ ..++|++|++++.++++|.|||+|+++|+|++..++++||+|+
T Consensus 499 Id~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~ 578 (1289)
T 3avx_A 499 IEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLA 578 (1289)
T ss_dssp CCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEECSSCEESEEETTCEEEEEESSCCGGGCCTTCEEE
T ss_pred ccccccccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEeecCceeeEEecCCcceeEeeecchhcCCcccEEe
Confidence 99998 5899999999999999999999999987 7899999999999999999999999999999999999999999
Q ss_pred cCCCCccceeEEEEEEEEeccc---ccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEE
Q 010278 393 SVAKPVAAVTEFIAQLQILELL---DNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 469 (514)
Q Consensus 393 ~~~~~~~~~~~f~a~i~~~~~~---~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~ 469 (514)
+++. +.+++.|.|++.||+.. ++.++..||++++|+++.+++|+|. +. ..+.+|++|+.+.|+
T Consensus 579 ~~~~-~~~~~~F~A~V~~L~~~egg~~~pi~~G~~p~l~igT~~vtg~I~-L~------------~~~~~L~~Gd~a~V~ 644 (1289)
T 3avx_A 579 KPGT-IKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIE-LP------------EGVEMVMPGDNIKMV 644 (1289)
T ss_dssp STTS-CCEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEECSSCEEEEEEE-CC------------TTCCCBCTTCCCEEE
T ss_pred cCCC-CccceeEEEEEEEEccccccccccccCCCceEEEEeeeeEEEEEE-EC------------CCcccccCCCEEEEE
Confidence 9884 57899999999996532 1258999999999999999999987 31 125679999999999
Q ss_pred EEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecCCCC
Q 010278 470 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVS 511 (514)
Q Consensus 470 ~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~~~~ 511 (514)
|+|.+|+|++++ +||+||+.|+|+|+|+|+++.+..
T Consensus 645 L~l~~Pi~ve~g------~RFiLRd~grTIG~G~V~~v~~~~ 680 (1289)
T 3avx_A 645 VTLIHPIAMDDG------LRFAIREGGRTVGAGVVAKVLSGA 680 (1289)
T ss_dssp EEEEEEEECCTT------CEEEEEETTEEEEEEEEEEECCCC
T ss_pred EEECceEEEccC------CEEEEEeCCeEEEEEEEeeechhh
Confidence 999999999986 799999999999999999987654
No 12
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=1.6e-58 Score=491.40 Aligned_cols=370 Identities=23% Similarity=0.394 Sum_probs=304.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
..++.++|+++||+|+|||||+++|+... ..+.+|....|+++|+|++.++..+.+
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~------------------------~~~~~d~~~~e~~~GiTi~~~~~~~~~ 70 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIA------------------------STSAHDKLPESQKRGITIDIGFSAFKL 70 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------------------------------CCCEEEE
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCC------------------------cccccccccccccCccEEecceEEEEE
Confidence 34578999999999999999999994321 123466777899999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~ 238 (514)
+++.++|+|||||++|.+++.++++.+|++||||||++|.+ +||++|+.++..+++| +|+|+||||+ .+
T Consensus 71 ~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~-------~qt~e~l~~~~~~~ip-~IvviNK~Dl--~~- 139 (482)
T 1wb1_A 71 ENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPK-------TQTGEHMLILDHFNIP-IIVVITKSDN--AG- 139 (482)
T ss_dssp TTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSC-------HHHHHHHHHHHHTTCC-BCEEEECTTS--SC-
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCcc-------HHHHHHHHHHHHcCCC-EEEEEECCCc--cc-
Confidence 99999999999999999999999999999999999999854 6999999999999999 5899999999 42
Q ss_pred hHHHHHHHHhhhhhhhhhc-cCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEEE
Q 010278 239 SKERYDEIESKMTPFLKAS-GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 317 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~-g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~i 317 (514)
++.++.+.+++..+++.. ++. .++++|+||++|.|+.++++. |.+.+. ++...++.++|++++|
T Consensus 140 -~~~~~~~~~~l~~~l~~~~~~~---~~~ii~vSA~~g~gI~~L~~~----------L~~~i~-~~~~~~~~~~~~~~~v 204 (482)
T 1wb1_A 140 -TEEIKRTEMIMKSILQSTHNLK---NSSIIPISAKTGFGVDELKNL----------IITTLN-NAEIIRNTESYFKMPL 204 (482)
T ss_dssp -HHHHHHHHHHHHHHHHHSSSGG---GCCEEECCTTTCTTHHHHHHH----------HHHHHH-HSCCCCCSSSCCBCBC
T ss_pred -chhHHHHHHHHHHHHhhhcccc---cceEEEEECcCCCCHHHHHHH----------HHHhhc-Cccccccccccccccc
Confidence 456788888888888877 664 579999999999999985432 222222 2222666788999999
Q ss_pred EEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEE-ccC
Q 010278 318 IDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVL-SSV 394 (514)
Q Consensus 318 ~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl-~~~ 394 (514)
+++| ++.|+|++|+|.+|.|++||.|.++|.+...+|++|+++++++++|.||++|+++++|++..++++||+| +.+
T Consensus 205 ~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~~~~ 284 (482)
T 1wb1_A 205 DHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKD 284 (482)
T ss_dssp SCEECCSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBCGGGSCBCCCCSSCCCCEECSSCCSSCCCSSCBCCCTT
T ss_pred eeEEEecCCceEEEEEEEEeEEeeCCEEEECCCCcEEEEeEEEECCeEeeEecCCCEEEEEecCCCHhhccccceEecCC
Confidence 9999 5899999999999999999999999999999999999999999999999999999999988899999999 555
Q ss_pred CCCccceeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEE-EEeecCCCcccccccccccCCCEEEEEEEEc
Q 010278 395 AKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELL-HQIDLKTKKPMKKKVLFVKNGAIVVCRIQVN 473 (514)
Q Consensus 395 ~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~-~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~ 473 (514)
+ ++.+++.|+|++.|++. ...+|..||++.+|+++.+++|+|..+. +++|.+++.. .+++|++|+.+.|+|+|.
T Consensus 285 ~-~~~~~~~~~a~v~~l~~-~~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~---~~~~l~~g~~~~v~l~~~ 359 (482)
T 1wb1_A 285 T-KLQTVDKIVAKIKISDI-FKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENI---ILNEVISGNEXYXAFELE 359 (482)
T ss_dssp C-CCCCEEEEEECCCCCSS-CCSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEE---ECCSSCCSSCCCEEEEEE
T ss_pred C-CCceeeEEEEEEEEecc-CCcccCCCCEEEEEEcccEEEEEEEEEeccccccccccc---cchhhcCCCEEEEEEEcC
Confidence 4 67788999999999542 1268999999999999999999999998 7888887542 256899999999999999
Q ss_pred ceEEeeecccccccceEEEEe---C---CeEEEEEEEEecCC
Q 010278 474 NSICTEKFADFAQLGRFTLRT---E---GKTVAVGKVTELPT 509 (514)
Q Consensus 474 ~pi~~e~~~~~~~lgrfilr~---~---g~tva~G~I~~v~~ 509 (514)
+|+|++.+ +||+||+ . ++|+|+|+|+++.+
T Consensus 360 ~pv~~~~~------~rfilr~~~~~~~~~~tvg~G~v~~~~~ 395 (482)
T 1wb1_A 360 EKVLAEVG------DRVLITRLDLPPTTLRIXGHGLIEEFKP 395 (482)
T ss_dssp EEECCCSS------CCCBEECTTSCTTSCCCCCBCCEEECCC
T ss_pred ccEEecCC------CeEEEEECCCCccCceEeeEEEEEeccc
Confidence 99999875 7999998 4 89999999998743
No 13
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=4.8e-55 Score=449.45 Aligned_cols=336 Identities=20% Similarity=0.299 Sum_probs=286.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
+|+++||+|+|||||+++|+ ++|+|++.+...++++++.++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------------------------------------~~giTi~~~~~~~~~~~~~i~ 63 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------------------------------------KKGTSSDITMYNNDKEGRNMV 63 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------------------------------------EEEEESSSEEEEECSSSSEEE
T ss_pred EEEEECCCCCCHHHHHHHHH---------------------------------------hCCEEEEeeEEEEecCCeEEE
Confidence 99999999999999999983 389999999999999999999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe-eccCCCCCchHHHH
Q 010278 165 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKERY 243 (514)
Q Consensus 165 liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviN-K~D~~~~~~~~~~~ 243 (514)
|||||||++|+++++++++.+|++||||| ..|.+ +||++|+.++..+++|++|+++| |||+ .. ..+
T Consensus 64 iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~-------~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~----~~~ 130 (370)
T 2elf_A 64 FVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLD-------AHTGECIIALDLLGFKHGIIALTRSDST-HM----HAI 130 (370)
T ss_dssp EEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCC-------HHHHHHHHHHHHTTCCEEEEEECCGGGS-CH----HHH
T ss_pred EEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCc-------HHHHHHHHHHHHcCCCeEEEEEEeccCC-CH----HHH
Confidence 99999999999999999999999999999 88854 69999999999999996589999 9998 32 345
Q ss_pred HHHHhhhhhhhhhccCcccCCeeEEe--ecccc---ccccccccccCCCCCCCcccHHHHhhhccCCCCC-CCCCceEEE
Q 010278 244 DEIESKMTPFLKASGYNVKKDVQFLP--ISGLM---GLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD-PNGPFRMPI 317 (514)
Q Consensus 244 ~~i~~~l~~~l~~~g~~~~~~~~iip--iSa~~---G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~-~~~p~~~~i 317 (514)
+++.+++..+++..++. .+|++| +||++ |.|+.++++. |.+.+.....+... ...|++++|
T Consensus 131 ~~~~~~i~~~l~~~~~~---~~~ii~~~~SA~~~~~g~gi~~L~~~----------l~~~~~~~~~~~~~~~~~p~r~~v 197 (370)
T 2elf_A 131 DELKAKLKVITSGTVLQ---DWECISLNTNKSAKNPFEGVDELKAR----------INEVAEKIEAENAELNSLPARIFI 197 (370)
T ss_dssp HHHHHHHHHHTTTSTTT---TCEEEECCCCTTSSSTTTTHHHHHHH----------HHHHHHHHHHHHHHGGGSCCEEEE
T ss_pred HHHHHHHHHHHHhcCCC---ceEEEecccccccCcCCCCHHHHHHH----------HHhhccccccCCcccccccccccc
Confidence 56677788888777653 579999 99999 9999886542 44444332111122 456789999
Q ss_pred EEEEc--cCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeeeEEccCC
Q 010278 318 IDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 395 (514)
Q Consensus 318 ~~~~~--~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~ 395 (514)
.++|+ +.|++++|+|.+|+|++||+|+++|.+..++|++|+++++++++|.||++|+++|+|++..++++||+|++
T Consensus 198 ~~vf~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~-- 275 (370)
T 2elf_A 198 DHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD-- 275 (370)
T ss_dssp EEEECCC---CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEETTEEESEEETTCEEEEEEESCCGGGCCTTCEEES--
T ss_pred eeEEEcCCCceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEECCCCccEEcCCCcceEEEeccCHHHcCCceEEEC--
Confidence 99995 88999999999999999999999999999999999999999999999999999999999899999999998
Q ss_pred CCccceeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcce
Q 010278 396 KPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNS 475 (514)
Q Consensus 396 ~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~p 475 (514)
.+ ..+++|+|++.|++. ..+|..||++.+|+++.+++|+|..|.. |.. ++ ..+++|+.+.|+|+|.+|
T Consensus 276 ~~-~~~~~f~a~v~~l~~--~~~i~~g~~~~~~~~t~~~~~~v~~l~~--d~~-~~------~~~~~g~~~~v~l~~~~p 343 (370)
T 2elf_A 276 KE-IVTTDYTLECTVSKF--TKKIEPASVLHLFVGLQSEPVRVEKILV--DGN-EV------EEAKPGSTCVLELSGNKK 343 (370)
T ss_dssp CC-EEEEEEEEEEEECTT--SCCBCTTCEEEEEETTEEEEEEEEEEEE--TTE-EE------SCBCTTCEEEEEEEEEEE
T ss_pred CC-ceeEEEEEEEEEECC--CCCCCCCCEEEEEEcCCEEEEEEEEEEe--CCC-cc------eeecCCCEEEEEEEECcE
Confidence 35 889999999999532 2789999999999999999999998753 322 21 235699999999999999
Q ss_pred EEeeecccccccceEEEEeCC---eEEEEEEEE
Q 010278 476 ICTEKFADFAQLGRFTLRTEG---KTVAVGKVT 505 (514)
Q Consensus 476 i~~e~~~~~~~lgrfilr~~g---~tva~G~I~ 505 (514)
+|+++|. ||+||+.+ +|+|+|+|.
T Consensus 344 i~~~~~~------rfilr~~~~~~~tig~G~~~ 370 (370)
T 2elf_A 344 LAYSKQD------RFLLANLDLTQRFAAYGFSK 370 (370)
T ss_dssp EEECTTS------CEEEECTTSSSCEEEEEEEC
T ss_pred EEEeCCC------EEEEEECCCCCEEEEEEEeC
Confidence 9999884 99999965 799999873
No 14
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=3e-53 Score=443.57 Aligned_cols=343 Identities=24% Similarity=0.393 Sum_probs=284.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
.++.++|+++||+|||||||+++|+ |. ..|...+|+++|+|++.++..+.+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~---g~-------------------------~~~~~~~e~~~giTi~~~~~~~~~~ 58 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALT---GV-------------------------WTDTHSEELRRGITIKIGFADAEIR 58 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHH---TC-------------------------CCC--CGGGGSCSSSCCEEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHh---CC-------------------------ccccChhhhcCCcEEEEeeeeeecc
Confidence 4677999999999999999999994 21 1334457888999998887655441
Q ss_pred -----------------------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH
Q 010278 160 -----------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 216 (514)
Q Consensus 160 -----------------------~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~ 216 (514)
.+.++|||||||++|.++++++++.+|++||||||++|.. .+||++|+.++
T Consensus 59 ~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~------~~qt~e~l~~~ 132 (410)
T 1kk1_A 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCP------RPQTREHLMAL 132 (410)
T ss_dssp ECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSS------CHHHHHHHHHH
T ss_pred cccccccccccccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCC------ChhHHHHHHHH
Confidence 2789999999999999999999999999999999999851 37999999999
Q ss_pred HHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHH
Q 010278 217 KTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLF 296 (514)
Q Consensus 217 ~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~ 296 (514)
..++++++|+|+||||+...+ ...+..+++..+++.... ..++++++||++|.|+.+ |+
T Consensus 133 ~~~~~~~iivviNK~Dl~~~~----~~~~~~~~i~~~l~~~~~---~~~~~i~vSA~~g~gi~~--------------L~ 191 (410)
T 1kk1_A 133 QIIGQKNIIIAQNKIELVDKE----KALENYRQIKEFIEGTVA---ENAPIIPISALHGANIDV--------------LV 191 (410)
T ss_dssp HHHTCCCEEEEEECGGGSCHH----HHHHHHHHHHHHHTTSTT---TTCCEEECBTTTTBSHHH--------------HH
T ss_pred HHcCCCcEEEEEECccCCCHH----HHHHHHHHHHHHHHhcCc---CCCeEEEeeCCCCCCHHH--------------HH
Confidence 999987799999999994322 223344455556654332 257999999999999987 45
Q ss_pred HHhhh-ccCCCCCCCCCceEEEEEEEc----------cCCeEEEEEEeeeeeecCCEEEEecCCc------------EEE
Q 010278 297 EALDR-IEITPRDPNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGDSLLVMPNKA------------QVK 353 (514)
Q Consensus 297 ~~l~~-l~~~~~~~~~p~~~~i~~~~~----------~~G~v~~g~v~sG~l~~gd~v~~~p~~~------------~~~ 353 (514)
+.|.. ++.|.++.+.|++++|+++|+ .+|+|++|+|.+|+|++||.|.++|++. .++
T Consensus 192 ~~l~~~~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~ 271 (410)
T 1kk1_A 192 KAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTE 271 (410)
T ss_dssp HHHHHHSCCCCCCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHHhCCCCccccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeE
Confidence 55554 777777788999999999983 2688999999999999999999999742 689
Q ss_pred EEEEEECCeeeeecCCCCeEEEEcc---CCCcccceeeeEEccCCCCccceeEEEEEEEEecccc-------cccccCCc
Q 010278 354 VLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD-------NAIFTAGY 423 (514)
Q Consensus 354 V~si~~~~~~v~~a~aG~~v~~~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~-------~~~i~~G~ 423 (514)
|++|++++.++++|.||++|++.++ ++...++.+||+|++++.++..++.|+|++.||+... ..+|..||
T Consensus 272 v~~i~~~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~ 351 (410)
T 1kk1_A 272 IVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEPIKRKE 351 (410)
T ss_dssp EEEEEETTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTCSCCEEEEEEEEEEECCCCC--CCCCSCCCCCTTC
T ss_pred EEEEEECCeEecEEcCCCEEEEEEecCcccchhhccceeEEecCCCCCceeEEEEEEEEEEecccccccccccccCCCCC
Confidence 9999999999999999999999886 5666889999999999988888999999999965320 26899999
Q ss_pred EEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcceEEeeecccccccceEEEEe----CCeEE
Q 010278 424 KAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRT----EGKTV 499 (514)
Q Consensus 424 ~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~pi~~e~~~~~~~lgrfilr~----~g~tv 499 (514)
++++|+++.+++|+|..+. ++ .|+|+|.+|+|++.+ .||+||+ .++|+
T Consensus 352 ~~~~~~~t~~~~~~v~~~~--------------------~~--~~~l~~~~p~~~~~~------~~~~~~~~~~~~~r~i 403 (410)
T 1kk1_A 352 VLLLNVGTARTMGLVTGLG--------------------KD--EIEVKLQIPVCAEPG------DRVAISRQIGSRWRLI 403 (410)
T ss_dssp EEEEEETTEEEEEEEEEEE--------------------TT--EEEEEEEEEEECCTT------CEEEEEEEETTEEEEE
T ss_pred EEEEEEcCCEEeEEEEEec--------------------CC--EEEEEeCCcEEecCC------CEEEEEEecCCCcEEE
Confidence 9999999999999998652 12 688899999999987 5999998 68999
Q ss_pred EEEEEE
Q 010278 500 AVGKVT 505 (514)
Q Consensus 500 a~G~I~ 505 (514)
|+|+|+
T Consensus 404 g~G~i~ 409 (410)
T 1kk1_A 404 GYGIIK 409 (410)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 999997
No 15
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=1.5e-53 Score=445.43 Aligned_cols=343 Identities=26% Similarity=0.415 Sum_probs=273.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe-
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 158 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~- 158 (514)
.++.++|+++||+|||||||+++|. |. ..+....|+++|+|++.++..+..
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~---g~-------------------------~~~~~~~e~~~giTi~~~~~~~~~~ 56 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALT---GV-------------------------WTDRHSEELRRGISIRLGYADCEIR 56 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHH---SC-------------------------CCCC-------CCCCCCEEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHh---CC-------------------------ccccCcccccCCcEEEecccccccc
Confidence 4567999999999999999999994 21 123445778899999887655433
Q ss_pred --------------C--------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH
Q 010278 159 --------------E--------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 216 (514)
Q Consensus 159 --------------~--------~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~ 216 (514)
+ .+.++|||||||++|.++++++++.+|++||||||++|.. .+||++|+.++
T Consensus 57 ~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~------~~qt~e~l~~~ 130 (408)
T 1s0u_A 57 KCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCP------QPQTKEHLMAL 130 (408)
T ss_dssp ECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSS------CHHHHHHHHHH
T ss_pred cccccccccccccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCC------CchhHHHHHHH
Confidence 1 2789999999999999999999999999999999999851 37999999999
Q ss_pred HHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHH
Q 010278 217 KTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLF 296 (514)
Q Consensus 217 ~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~ 296 (514)
..++++++|||+||+|+...++....++++ ..+++.... ..++++|+||++|.|+.+ |+
T Consensus 131 ~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i----~~~l~~~~~---~~~~~i~vSA~~g~gi~~--------------L~ 189 (408)
T 1s0u_A 131 EILGIDKIIIVQNKIDLVDEKQAEENYEQI----KEFVKGTIA---ENAPIIPISAHHEANIDV--------------LL 189 (408)
T ss_dssp HHTTCCCEEEEEECTTSSCTTTTTTHHHHH----HHHHTTSTT---TTCCEEEC------CHHH--------------HH
T ss_pred HHcCCCeEEEEEEccCCCCHHHHHHHHHHH----HHHHhhcCC---CCCeEEEeeCCCCCCHHH--------------HH
Confidence 999987799999999995444333344444 344544322 257999999999999987 45
Q ss_pred HHhh-hccCCCCCCCCCceEEEEEEEc----------cCCeEEEEEEeeeeeecCCEEEEecCC------------cEEE
Q 010278 297 EALD-RIEITPRDPNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGDSLLVMPNK------------AQVK 353 (514)
Q Consensus 297 ~~l~-~l~~~~~~~~~p~~~~i~~~~~----------~~G~v~~g~v~sG~l~~gd~v~~~p~~------------~~~~ 353 (514)
+.|. .++.+.++.+.|++++|+++|+ .+|+|++|+|.+|+|++||.|.++|++ ..++
T Consensus 190 ~~l~~~i~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~ 269 (408)
T 1s0u_A 190 KAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTK 269 (408)
T ss_dssp HHHHHHSCCCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEE
T ss_pred HHHHHhCCCCcccCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeE
Confidence 5554 4777778889999999999983 268899999999999999999999964 2689
Q ss_pred EEEEEECCeeeeecCCCCeEEEEcc---CCCcccceeeeEEccCCCCccceeEEEEEEEEecccc-------cccccCCc
Q 010278 354 VLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD-------NAIFTAGY 423 (514)
Q Consensus 354 V~si~~~~~~v~~a~aG~~v~~~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~-------~~~i~~G~ 423 (514)
|++|+++++++++|.||++|++++. +++..++++||+|++++.+++.++.|+|++.||+... +.+|..||
T Consensus 270 v~~i~~~~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~ 349 (408)
T 1s0u_A 270 IVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEELKIEPLRTGE 349 (408)
T ss_dssp CCEEEETTEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEESTTCSCCEEEEEEEEEEECCCCSSCSSTTCCCCCCTTC
T ss_pred EEEEEECCEEcCEEeCCCeEEEEeccCcccchhhccceeEEECCCCCCceeEEEEEEEEEEeccccccccccccCCCCCC
Confidence 9999999999999999999999987 6778899999999999988888999999999965320 26899999
Q ss_pred EEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEcceEEeeecccccccceEEEEe----CCeEE
Q 010278 424 KAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRT----EGKTV 499 (514)
Q Consensus 424 ~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~pi~~e~~~~~~~lgrfilr~----~g~tv 499 (514)
++++|+++.++.|+|..+. ++ .|+|+|.+|+|++.+ .||+||+ .++|+
T Consensus 350 ~~~~~~~t~~~~~~v~~~~--------------------~~--~~~~~~~~p~~~~~~------~~~~~~~~~~~~~r~i 401 (408)
T 1s0u_A 350 VLMLNIGTATTAGVITSAR--------------------GD--IADIKLKLPICAEIG------DRVAISRRVGSRWRLI 401 (408)
T ss_dssp EEEEEETTEEEEEEEEEEE--------------------TT--EEEEEEEEEEECCTT------CEEEEEEECSSSEEEE
T ss_pred EEEEEEcCCEEEEEEEEec--------------------CC--EEEEEECCcEEecCC------CEEEEEEecCCCeEEE
Confidence 9999999999999999652 12 688899999999987 5999998 58999
Q ss_pred EEEEEE
Q 010278 500 AVGKVT 505 (514)
Q Consensus 500 a~G~I~ 505 (514)
|+|.|+
T Consensus 402 g~G~i~ 407 (408)
T 1s0u_A 402 GYGTIE 407 (408)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999996
No 16
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=4.2e-50 Score=418.68 Aligned_cols=355 Identities=23% Similarity=0.300 Sum_probs=277.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEE---
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF--- 156 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~--- 156 (514)
.++.++|+++||+|+|||||+++|+....... .| +..............++++.+.....+
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~-------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK-------------LG---YAETNIGVCESCKKPEAYVTEPSCKSCGSD 68 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS-------------SE---EEEEEEEECTTSCTTTTEESSSCCGGGTCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccc-------------cC---ccccceeeccccccccceeccccccccccc
Confidence 45679999999999999999999954211100 00 000000001111223344333221111
Q ss_pred --EeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCC
Q 010278 157 --ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 234 (514)
Q Consensus 157 --~~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~ 234 (514)
....+.++|+|||||++|.+++.++++.+|++|||||++++.. .+|+++|+.++..++++++|+|+||+|+
T Consensus 69 ~~~~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~------~~qt~~~~~~~~~~~~~~iivviNK~Dl- 141 (403)
T 3sjy_A 69 DEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFP------QPQTREHFVALGIIGVKNLIIVQNKVDV- 141 (403)
T ss_dssp SCCEEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSS------CHHHHHHHHHHHHHTCCCEEEEEECGGG-
T ss_pred ccccccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCC------cHHHHHHHHHHHHcCCCCEEEEEECccc-
Confidence 1223789999999999999999999999999999999999851 2699999999999998669999999999
Q ss_pred CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhh-ccCCCCCCCCCc
Q 010278 235 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRDPNGPF 313 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~-l~~~~~~~~~p~ 313 (514)
.+ .+...+..+++..+++..+.. .++++++||++|.|+.+ |++.|.. ++.+.++.+.|+
T Consensus 142 -~~--~~~~~~~~~~i~~~l~~~~~~---~~~ii~vSA~~g~gi~~--------------L~~~l~~~l~~~~~~~~~~~ 201 (403)
T 3sjy_A 142 -VS--KEEALSQYRQIKQFTKGTWAE---NVPIIPVSALHKINIDS--------------LIEGIEEYIKTPYRDLSQKP 201 (403)
T ss_dssp -SC--HHHHHHHHHHHHHHHTTSTTT---TCCEEECBTTTTBSHHH--------------HHHHHHHHSCCCCCCTTSCC
T ss_pred -cc--hHHHHHHHHHHHHHHHhhCCC---CCEEEEEECCCCcChHH--------------HHHHHHHhCCCCCCCCCCCc
Confidence 43 233445556666666665543 67999999999999987 4555544 777778889999
Q ss_pred eEEEEEEEc--c--------CCeEEEEEEeeeeeecCCEEEEecCCc------------EEEEEEEEECCeeeeecCCCC
Q 010278 314 RMPIIDKFK--D--------MGTVVMGKVESGSVREGDSLLVMPNKA------------QVKVLAIYCDDNRVRHAGPGE 371 (514)
Q Consensus 314 ~~~i~~~~~--~--------~G~v~~g~v~sG~l~~gd~v~~~p~~~------------~~~V~si~~~~~~v~~a~aG~ 371 (514)
+++|+++|. + +|+|++|+|.+|+|++||+|.++|++. ..+|++|+++++++++|.|||
T Consensus 202 ~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~ 281 (403)
T 3sjy_A 202 VMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGG 281 (403)
T ss_dssp EEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSS
T ss_pred EEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEECCEEcCEEeCCC
Confidence 999999883 3 799999999999999999999999874 589999999999999999999
Q ss_pred eEEEEcc---CCCcccceeeeEEccCCCCccceeEEEEEEEEeccc-------ccccccCCcEEEEEEEeEEEEEEEEEE
Q 010278 372 NLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL-------DNAIFTAGYKAVLHIHAVVEECEIVEL 441 (514)
Q Consensus 372 ~v~~~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~-------~~~~i~~G~~~~~~~~~~~~~~~i~~i 441 (514)
+|+++|. +++..++++||||++++.+|+.++.|+|++.||+.. .+.+|..||++.+|+++.++.|+|..+
T Consensus 282 ~v~~~l~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~gt~~~~~~v~~~ 361 (403)
T 3sjy_A 282 LVAIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSV 361 (403)
T ss_dssp CEEEEESSCHHHHGGGTTTTCEEEETTCCCCEEEEEEEEEEECSBCTTCSSCCBCCCCCTTCEEEEEETTEEEEEEEEEE
T ss_pred EEEEEeccccccchhhhccccEEeCCCCCCcceeEEEEEEEEEeccccccccccCCCCCCCCEEEEEECccEEEEEEEEe
Confidence 9999886 667789999999999998888899999999997632 146899999999999999999999865
Q ss_pred EEEeecCCCcccccccccccCCCEEEEEEEEcceEEeeecccccccc-eEEE-EeCC---eEEEEEEEE
Q 010278 442 LHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLG-RFTL-RTEG---KTVAVGKVT 505 (514)
Q Consensus 442 ~~~id~~tg~~~~~~~~~l~~g~~a~v~~~~~~pi~~e~~~~~~~lg-rfil-r~~g---~tva~G~I~ 505 (514)
. ++ .++|+|.+|+|++.. . ||+| |+.+ +.+|+|.|+
T Consensus 362 ~--------------------~~--~~~~~l~~p~~~~~g------~~r~~i~r~~~~~~r~~g~g~i~ 402 (403)
T 3sjy_A 362 K--------------------KD--EIEVELRRPVAVWSN------NIRTVISRQIAGRWRMIGWGLVE 402 (403)
T ss_dssp C--------------------SS--EEEEEEEEEEECCSS------SCEEEEEEEETTEEEEEEEEEEE
T ss_pred c--------------------Cc--eEEEEeCCcEeeccC------CEEEEEEEEeCCcEEEEEEEEEE
Confidence 1 11 588999999998864 5 8998 5444 899999985
No 17
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=100.00 E-value=2.2e-42 Score=325.78 Aligned_cols=199 Identities=48% Similarity=0.818 Sum_probs=187.8
Q ss_pred CCCCceEEEEEEEccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceee
Q 010278 309 PNGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 388 (514)
Q Consensus 309 ~~~p~~~~i~~~~~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G 388 (514)
.++||+|+|+++|++.|++++|+|.+|+|++||.|.++|++..++|++|+++++++++|.|||+|+++|+|++..++++|
T Consensus 3 ~~~p~rl~v~~v~~g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~~di~rG 82 (204)
T 3e1y_E 3 LGSPIRLPIVDKYKDMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEEILPG 82 (204)
T ss_dssp ----CBEEEEEEEESSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECSSSSCBSEECTTSEEEEEEEESSSSCCCTT
T ss_pred CCCCEEEEEEEEEcCCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEECCEEeEEECCCCEEEEEEcCCCHHHCccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEccCCCCccceeEEEEEEEEeccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCcccccccccccCCCEEE
Q 010278 389 FVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVV 467 (514)
Q Consensus 389 ~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~g~~a~ 467 (514)
|+|++++++++.+++|+|++.| +++ ++|..||++++|+|+.+++|+|.+|.+++|.+||+..+.+|++|++||.+.
T Consensus 83 ~vl~~~~~~~~~~~~f~a~v~~---l~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~gd~a~ 159 (204)
T 3e1y_E 83 FILCDPNNLCHSGRTFDAQIVI---IEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCI 159 (204)
T ss_dssp CEEBCSSSCCCCCSEEEEEEEC---CSCCSCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCCCTTCEEE
T ss_pred eEEECCCCCCchhEEEEEEEEE---eCCCCccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCcCCCCEEE
Confidence 9999999888999999999999 455 579999999999999999999999999999999998888899999999999
Q ss_pred EEEEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecCCC
Q 010278 468 CRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 510 (514)
Q Consensus 468 v~~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~I~~v~~~ 510 (514)
|+|++.+|+|+|+|.+|+.+|||+|||+|+|+|+|+|+++.+.
T Consensus 160 v~l~~~~pi~~e~~~~~~~~Grfilrd~~~Tva~G~V~~v~~~ 202 (204)
T 3e1y_E 160 ARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPE 202 (204)
T ss_dssp EEEEESSCCCCCCTTSSGGGTEEEEECSSSCCEEEEEEEECC-
T ss_pred EEEEECCeEEEEEcccCcCCCCEEEEECCcEEEEEEEEEEecC
Confidence 9999999999999999999999999999999999999998875
No 18
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=1.6e-38 Score=341.78 Aligned_cols=282 Identities=19% Similarity=0.200 Sum_probs=205.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.+||+|+||+|||||||+.+||+.+|.+.....- ..|. .....+||+.+.|++|||||..+...|.|+
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V-------~~~~--~~~~~~~D~~~~EreRGITI~s~~~~~~~~ 98 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSV-------KARK--AARHATSDWMAMERERGISVTTSVMQFPYR 98 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHH-------HHC----------------------CTTTEEEEEET
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhcCccccccee-------ecCc--cccccccCChHHHHHCCCcEeeceEEEEEC
Confidence 3478999999999999999999999999987543211 1110 112357899999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~ 239 (514)
++.|+|||||||.+|...+.++++.+|+||+||||.+|+. +||+..++++...++| .|++|||||+..+++.
T Consensus 99 ~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~-------~qT~~v~~~a~~~~lp-~i~fINK~Dr~~ad~~ 170 (548)
T 3vqt_A 99 DRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVE-------AQTRKLMDVCRMRATP-VMTFVNKMDREALHPL 170 (548)
T ss_dssp TEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSC-------HHHHHHHHHHHHTTCC-EEEEEECTTSCCCCHH
T ss_pred CEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcc-------cccHHHHHHHHHhCCc-eEEEEecccchhcchh
Confidence 9999999999999999999999999999999999999964 8999999999999999 7889999999777642
Q ss_pred HHHHHHHHhhhhhhh-----------------------------------------------------------------
Q 010278 240 KERYDEIESKMTPFL----------------------------------------------------------------- 254 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l----------------------------------------------------------------- 254 (514)
..++++.+.+....
T Consensus 171 -~~~~~i~~~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (548)
T 3vqt_A 171 -DVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLA 249 (548)
T ss_dssp -HHHHHHHHHHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHH
T ss_pred -HhhhhhhhhcCCceEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHH
Confidence 23333333321100
Q ss_pred --hhccC-------cccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCC---------CCCCCceEE
Q 010278 255 --KASGY-------NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR---------DPNGPFRMP 316 (514)
Q Consensus 255 --~~~g~-------~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~---------~~~~p~~~~ 316 (514)
...+. ....-+|++..||+++.|+..| |..+++.+|.|.. +.+.||...
T Consensus 250 l~~~~~~~~~~e~~~~g~~~PV~~gSA~~~~Gv~~L-------------Ld~iv~~~PsP~~~~~~~~~~~~~~~p~~a~ 316 (548)
T 3vqt_A 250 LLEEAGTPFDEERYLKGELTPVFFGSAINNFGVREM-------------LDMFVEFAPGPQPRPAATRVVEPGEEAFTGV 316 (548)
T ss_dssp HHHHHCCCCCHHHHHTTSEEEEEECBGGGTBSHHHH-------------HHHHHHHSCCSCCEEBSSSEECTTCSSCEEE
T ss_pred HHhhccCchhHHHHHhCCcceeeecccccCcCHHHH-------------HHHHHHhCCCCCCccccccccCCCCcCceEE
Confidence 00000 0012368889999999999875 2234556776642 346789888
Q ss_pred EEEEEc-----cCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC----CeeeeecCCCCeEEEEccCCCccccee
Q 010278 317 IIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILS 387 (514)
Q Consensus 317 i~~~~~-----~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~ 387 (514)
|..++. ..|.+.++||.||+|+.|+.|+....+...+|..+... +.++++|.||++|++ .|++ +++.
T Consensus 317 vfKi~~~~~~~~~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai--~gl~--~~~~ 392 (548)
T 3vqt_A 317 VFKIQANMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGI--PNHG--TIKI 392 (548)
T ss_dssp EEEEECC-------CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEE--ECSS--CCCT
T ss_pred EEEEEccCCcCCCCeEEEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEe--cCCc--cCcc
Confidence 888763 47999999999999999999999888888999888765 467999999999995 5553 4889
Q ss_pred eeEEccCCC
Q 010278 388 GFVLSSVAK 396 (514)
Q Consensus 388 G~vl~~~~~ 396 (514)
||+||+.+.
T Consensus 393 GDTl~~~~~ 401 (548)
T 3vqt_A 393 GDTFTESKE 401 (548)
T ss_dssp TCEEESSSS
T ss_pred CCEecCCCC
Confidence 999998764
No 19
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=5.8e-37 Score=330.71 Aligned_cols=268 Identities=24% Similarity=0.378 Sum_probs=203.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC-
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 159 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~- 159 (514)
++.+||+|+||+|||||||+++|++.+|.+..+.+ ..+++|..+.|+++|+|+......+.+.
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~----------------~~~~~D~~~~ErerGITI~~~~~~~~~~~ 67 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREK----------------REQLLDTLDVERERGITVKMQAVRMFYKA 67 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC---------------------------------------CCCCSEEEEEEC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccc----------------cccccccchhhhcccceeeeeEEEEEEEc
Confidence 46789999999999999999999998887765421 2467888999999999999888877764
Q ss_pred ----CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCC
Q 010278 160 ----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 160 ----~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~ 235 (514)
.+.++|||||||.+|..++.++++.+|++||||||.+|+. .||.+++.++...++| +|+|+||||+..
T Consensus 68 ~dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~-------~qt~~~~~~a~~~~ip-iIvviNKiDl~~ 139 (600)
T 2ywe_A 68 KDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIE-------AQTVANFWKAVEQDLV-IIPVINKIDLPS 139 (600)
T ss_dssp TTSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCC-------HHHHHHHHHHHHTTCE-EEEEEECTTSTT
T ss_pred CCCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCcc-------HHHHHHHHHHHHCCCC-EEEEEeccCccc
Confidence 3789999999999999999999999999999999999953 6999999999999999 899999999954
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceE
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 315 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~ 315 (514)
.+ ++++.+++... +++. ..+++++||++|.|+.++ |..+++.++.|..+.+.|+++
T Consensus 140 a~-----~~~v~~el~~~---lg~~---~~~vi~vSAktg~GI~~L-------------le~I~~~lp~p~~~~~~pl~~ 195 (600)
T 2ywe_A 140 AD-----VDRVKKQIEEV---LGLD---PEEAILASAKEGIGIEEI-------------LEAIVNRIPPPKGDPQKPLKA 195 (600)
T ss_dssp CC-----HHHHHHHHHHT---SCCC---GGGCEECBTTTTBSHHHH-------------HHHHHHHSCCCCCCTTSCCEE
T ss_pred cC-----HHHHHHHHHHh---hCCC---cccEEEEEeecCCCchHH-------------HHHHHHhcccccccccCCcce
Confidence 43 23334444333 3443 236899999999999985 334556788888788899999
Q ss_pred EEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC---CeeeeecCCCCeEEEEccCC-Ccccceeee
Q 010278 316 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGI-EEEDILSGF 389 (514)
Q Consensus 316 ~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~---~~~v~~a~aG~~v~~~l~~~-~~~~i~~G~ 389 (514)
.|.+++ ++.|++++|+|.+|+|++||.|.+.|.+...+|++|..+ +.+++++.||+++.+. .|+ ...++++||
T Consensus 196 lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdi~~v~-~gi~~~~~~~~GD 274 (600)
T 2ywe_A 196 LIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTPKMTKFDKLSAGDVGYIA-ASIKDVRDIRIGD 274 (600)
T ss_dssp EEEEEEEETTTEEEEEEEEEESEECTTCEEEETTTTEEEECCEEEEESSSEEEESCEETTCEEEEE-SSCCCTTSSCTTC
T ss_pred eEEEEeecccceEEEEEEEEeCEEecCCEEEeccccceEeeecccccCCCceECCEEecCceeeee-ccccchhhccCCC
Confidence 999887 568999999999999999999999999999999999875 3689999999987764 455 346799999
Q ss_pred EEccCCCC
Q 010278 390 VLSSVAKP 397 (514)
Q Consensus 390 vl~~~~~~ 397 (514)
+|+.++++
T Consensus 275 tl~~~~~~ 282 (600)
T 2ywe_A 275 TITHAKNP 282 (600)
T ss_dssp EEEESSSC
T ss_pred EEEeCCCc
Confidence 99987754
No 20
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=9e-36 Score=322.10 Aligned_cols=268 Identities=23% Similarity=0.359 Sum_probs=198.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC-
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 159 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~- 159 (514)
.+.+||+|+||+|||||||+++|++.+|.+..+.+ ..+++|..+.|+++|+|+......+.|.
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~----------------~~~~~D~~~~ErerGiTi~~~~~~~~~~~ 65 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREM----------------EAQVLDSMDLERERGITIKAQSVTLDYKA 65 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC------------------------------------------CEEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccc----------------cccccccchhhhcccceeeeeEEEEEEec
Confidence 35789999999999999999999998888765421 2467888899999999999988888775
Q ss_pred ----CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCC
Q 010278 160 ----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 160 ----~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~ 235 (514)
.+.++|||||||.+|...+.++++.+|++||||||.+|+. .||.+++..+...++| +|+++||+|+..
T Consensus 66 ~~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~-------~qt~~~~~~~~~~~ip-iIvViNKiDl~~ 137 (599)
T 3cb4_D 66 SDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVE-------AQTLANCYTAMEMDLE-VVPVLNKIDLPA 137 (599)
T ss_dssp TTSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCC-------THHHHHHHHHHHTTCE-EEEEEECTTSTT
T ss_pred CCCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCC-------HHHHHHHHHHHHCCCC-EEEeeeccCccc
Confidence 3789999999999999999999999999999999999954 6999999999999999 899999999954
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceE
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 315 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~ 315 (514)
.+ ++++.+++... +++. ..+++++||++|.|+.++ |..+++.++.|..+.+.|+++
T Consensus 138 a~-----~~~v~~ei~~~---lg~~---~~~vi~vSAktg~GI~~L-------------l~~I~~~lp~p~~~~~~p~~a 193 (599)
T 3cb4_D 138 AD-----PERVAEEIEDI---VGID---ATDAVRCSAKTGVGVQDV-------------LERLVRDIPPPEGDPEGPLQA 193 (599)
T ss_dssp CC-----HHHHHHHHHHH---TCCC---CTTCEEECTTTCTTHHHH-------------HHHHHHHSCCCCCCTTSCCEE
T ss_pred cc-----HHHHHHHHHHH---hCCC---cceEEEeecccCCCchhH-------------HHHHhhcCCCccccccCCcee
Confidence 33 23334444333 2432 235899999999999885 333556678887788899999
Q ss_pred EEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC---CeeeeecCCCCeEEEEccCC-Ccccceeee
Q 010278 316 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGI-EEEDILSGF 389 (514)
Q Consensus 316 ~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~---~~~v~~a~aG~~v~~~l~~~-~~~~i~~G~ 389 (514)
.|.+++ ++.|++++|+|.+|+|+.||.+.+.+.+...+|.+|... +.+++++.||+++.+ +.|+ ...++++||
T Consensus 194 lI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~~~~~~~~~~aGdi~~~-~~gi~~~~~~~~GD 272 (599)
T 3cb4_D 194 LIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWL-VCAIKDIHGAPVGD 272 (599)
T ss_dssp EEEEEEEETTTEEEEEEEEEESCEESSCEEEETTTCCEEECCEEEEESSSEEECSEECTTCEEEE-ECCCSSGGGSCTTC
T ss_pred eeeeccccccccEEEEEEEEeCEEecCCEEEeccccceeEEeeeeeccCCceECCEEcCCCeeEe-eccccccccCccCC
Confidence 999987 568999999999999999999999999998899999874 467899999997776 4454 346789999
Q ss_pred EEccCCCC
Q 010278 390 VLSSVAKP 397 (514)
Q Consensus 390 vl~~~~~~ 397 (514)
+|++.+++
T Consensus 273 tl~~~~~~ 280 (599)
T 3cb4_D 273 TLTLARNP 280 (599)
T ss_dssp EEEESSSC
T ss_pred EeeecCCc
Confidence 99987654
No 21
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=5.2e-36 Score=332.61 Aligned_cols=278 Identities=23% Similarity=0.290 Sum_probs=198.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC-
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 159 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~- 159 (514)
.+.+||+|+||+|||||||+++||+.+|.+... |+- .....+||+.+.|++||||+.....++.|.
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~------------g~v-~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~ 77 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKL------------GEV-HDGAATTDWMVQEQERGITITSAAVTTFWKG 77 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC-------------------------------------CCEEEEEECC
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcC------------cee-cCCCccCCChHHHHHcCCeEEeeeEEEEecc
Confidence 578999999999999999999999998865431 110 012356999999999999999999999885
Q ss_pred ------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 160 ------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 160 ------~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
++.|+|||||||.+|...+.++++.+|+||+||||.+|+. .||+..++++...++| .|++|||||+
T Consensus 78 ~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~-------~qT~~v~~~a~~~~lp-~i~~iNKiDr 149 (709)
T 4fn5_A 78 SRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVE-------PQSETVWRQANKYGVP-RIVYVNKMDR 149 (709)
T ss_dssp TTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHHHHHHHHTCC-EEEEEECSSS
T ss_pred CcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCc-------hhHHHHHHHHHHcCCC-eEEEEccccc
Confidence 5899999999999999999999999999999999999965 7999999999999999 7899999999
Q ss_pred CCCCchHHHHHHHHhhhhh-------------------------------------------------------------
Q 010278 234 HTVNWSKERYDEIESKMTP------------------------------------------------------------- 252 (514)
Q Consensus 234 ~~~~~~~~~~~~i~~~l~~------------------------------------------------------------- 252 (514)
..+++. ...+++.+.+..
T Consensus 150 ~~a~~~-~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 228 (709)
T 4fn5_A 150 QGANFL-RVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEA 228 (709)
T ss_dssp TTCCHH-HHHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHH
T ss_pred cCccHH-HHHHHhhhhcccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHH
Confidence 766532 222333222110
Q ss_pred -----------hhhhccC-------------cccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCC--
Q 010278 253 -----------FLKASGY-------------NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITP-- 306 (514)
Q Consensus 253 -----------~l~~~g~-------------~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~-- 306 (514)
++....+ ....-.|++..||+++.|+..+ |..+++.+|.|.
T Consensus 229 ~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~l-------------Ld~i~~~lPsP~~~ 295 (709)
T 4fn5_A 229 AAEANEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLV-------------LDAVIDYLPAPTEI 295 (709)
T ss_dssp HHTSSHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHH-------------HHHHHHHSCCTTSS
T ss_pred HHhccHHHHHHHHhcCCccHHHHHHHHHHhhhhceeeeeeeeecccCCchHHH-------------HHHHHhhCCCCccc
Confidence 0000000 0012357788888888888764 223455566652
Q ss_pred ------------------CCCCCCceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC----Ce
Q 010278 307 ------------------RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DN 362 (514)
Q Consensus 307 ------------------~~~~~p~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~ 362 (514)
++.+.||.+.|.++. +..|.++.+||+||+|+.||+|+....++..+|..+... ..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~ 375 (709)
T 4fn5_A 296 PAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQRE 375 (709)
T ss_dssp CCEECBCCC-CCSCCEECSCTTSCCEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCC
T ss_pred ccccccCCccccccccccCCccCcceEEEEEeecccCCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceee
Confidence 456789999999887 457999999999999999999998777777788887654 56
Q ss_pred eeeecCCCCeEEEEccCCCcccceeeeEEccCCCC
Q 010278 363 RVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 397 (514)
Q Consensus 363 ~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~~ 397 (514)
++++|.||++|++ .|++ +++.|++|++.+.+
T Consensus 376 ~v~~~~aGdIv~i--~Gl~--~~~~gdTl~~~~~~ 406 (709)
T 4fn5_A 376 EIKEVRAGDIAAL--IGMK--DVTTGDTLCSIEKP 406 (709)
T ss_dssp EESEECTTCEEEE--CSCS--SCCTTCEEECSSSC
T ss_pred EeeeecCCCeeee--cCCC--cCccCCEecCCCcc
Confidence 8999999999994 6774 48899999987643
No 22
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=6.1e-38 Score=343.77 Aligned_cols=274 Identities=22% Similarity=0.312 Sum_probs=215.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
+++||+|+||+|||||||+++||+.+|.+.... +. ......+|+.+.|++||||+..+...|.|+++
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g------------~v-~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~ 67 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELG------------SV-DKGTTRTDNTLLERQRGITIQTGITSFQWENT 67 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCS------------SC-CCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSC
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCcccc------------cc-ccCCcccCCcHHHHhCCCcEEeeeEEEEECCE
Confidence 468999999999999999999999999876531 11 11245699999999999999999999999999
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHH
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 241 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~ 241 (514)
.|+|||||||.+|..++.++++.+|+||+||||.+|+. +||+.++.++..+++| .|++|||||+..+++. .
T Consensus 68 ~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~-------~qT~~v~~~a~~~~lp-~i~~INKmDr~~a~~~-~ 138 (638)
T 3j25_A 68 KVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQ-------AQTRILFHALRKMGIP-TIFFINKIDQNGIDLS-T 138 (638)
T ss_dssp BCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTC-------SHHHHHHHHHHHHTCS-CEECCEECCSSSCCSH-H
T ss_pred EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCC-eEEEEeccccccCCHH-H
Confidence 99999999999999999999999999999999999964 8999999999999999 6789999999777653 2
Q ss_pred HHHHHHhhhhh--------------------------------------hhhhcc-------------CcccCCeeEEee
Q 010278 242 RYDEIESKMTP--------------------------------------FLKASG-------------YNVKKDVQFLPI 270 (514)
Q Consensus 242 ~~~~i~~~l~~--------------------------------------~l~~~g-------------~~~~~~~~iipi 270 (514)
.++++.+.+.. ++.... +....-.|++..
T Consensus 139 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~g 218 (638)
T 3j25_A 139 VYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHG 218 (638)
T ss_dssp HHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCC
T ss_pred HHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhccccccccccc
Confidence 33344333210 000000 000123578888
Q ss_pred ccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecC
Q 010278 271 SGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN 348 (514)
Q Consensus 271 Sa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~ 348 (514)
||+++.|+..| |..+++.++.|....+.||.+.|.+++ +..|.++++||.||+|+.||.|.+...
T Consensus 219 Sa~~~~Gv~~L-------------Ld~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~ 285 (638)
T 3j25_A 219 SAKSNIGIDNL-------------IEVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEK 285 (638)
T ss_dssp CSTTCCSHHHH-------------HHHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCC
T ss_pred ccccCCCchhH-------------hhhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccC
Confidence 99999999874 223446678887777889999998876 468999999999999999999987654
Q ss_pred CcEEEEEEEEEC----CeeeeecCCCCeEEEEccCCCcccceeeeEEccCCC
Q 010278 349 KAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 396 (514)
Q Consensus 349 ~~~~~V~si~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~ 396 (514)
+ ..+|..+... ..++++|.||++|++ .| ..++.|+++++...
T Consensus 286 ~-~~~v~~l~~~~g~~~~~v~~a~aGdIv~i--~g---~~~~~~~tl~d~~~ 331 (638)
T 3j25_A 286 E-KIKVTEMYTSINGELCKIDRAYSGEIVIL--QN---EFLKLNSVLGDTKL 331 (638)
T ss_dssp C-CSSBCCCCSSCCCCBSCCCTTBCCCCSCC--CS---SSCSSEECSSSSSS
T ss_pred c-ceeEEeeecccccccccccccccceEEEE--ec---cccccCceecCCCC
Confidence 4 3456666543 457899999999874 43 45678899887653
No 23
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=1.2e-33 Score=302.28 Aligned_cols=280 Identities=19% Similarity=0.217 Sum_probs=213.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+.++|+|+||+|+|||||+++|++..|.+.....-. .++ ......+|..+.++.+|+|+......+.+.+
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~-------~~~--~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 81 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIK-------SRK--AARHATSDWMELEKQRGISVTTSVMQFPYKD 81 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHH-------TC------CCHHHHHHHHHHHCCSSSSSEEEEEETT
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeee-------ccc--cccceecccchhhhcCCeeEEEeEEEEEeCC
Confidence 3578999999999999999999999888764322100 000 0112345666788899999999999999999
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~ 240 (514)
+.++|||||||.+|...+.+.++.+|++|+|||+..|.. .|+..++..+...++| +|+++||+|+...+. .
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~-------~~t~~~~~~~~~~~iP-iivviNK~Dl~~~~~-~ 152 (528)
T 3tr5_A 82 YLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVE-------PRTIKLMEVCRLRHTP-IMTFINKMDRDTRPS-I 152 (528)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSC-------HHHHHHHHHHHTTTCC-EEEEEECTTSCCSCH-H
T ss_pred EEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEeCCCCccccH-H
Confidence 999999999999999999999999999999999999853 6999999999999999 899999999965432 2
Q ss_pred HHHHHHHhhhhhhhhhc---------------------------------------------------------------
Q 010278 241 ERYDEIESKMTPFLKAS--------------------------------------------------------------- 257 (514)
Q Consensus 241 ~~~~~i~~~l~~~l~~~--------------------------------------------------------------- 257 (514)
..++++.+.+.......
T Consensus 153 ~~l~ei~~~l~~~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l 232 (528)
T 3tr5_A 153 ELLDEIESILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIEL 232 (528)
T ss_dssp HHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCceeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcch
Confidence 23344433322100000
Q ss_pred -----------cCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCC---------CCCCceEEE
Q 010278 258 -----------GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD---------PNGPFRMPI 317 (514)
Q Consensus 258 -----------g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~---------~~~p~~~~i 317 (514)
.+.....+|++++||++|.|+.++++ .+++.+|.|... .+.||...|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~PV~~gSA~~~~GV~~Lld-------------~i~~~~p~p~~~~~~~~~~~~~~~~~~~~V 299 (528)
T 3tr5_A 233 VKGASHPFEREGYLKGELTPIFFGSAINNFGVGELLD-------------AFVKEAPPPQGRETNSRLVKPEEEKFSGFV 299 (528)
T ss_dssp HHHHSCCCCHHHHHTTSEEEEEECBGGGTBSHHHHHH-------------HHHHHSCCCCCBCBSSSCBCTTSSSCEEEE
T ss_pred hhhhhhHHHHHHHhcCceeEEEeccccCCccHHHHHH-------------HHHHhCCCCCcccccceeeCCCcccceeEE
Confidence 00001235899999999999998532 234455555421 257899999
Q ss_pred EEEE----c-cCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC----CeeeeecCCCCeEEEEccCCCcccceee
Q 010278 318 IDKF----K-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSG 388 (514)
Q Consensus 318 ~~~~----~-~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G 388 (514)
.++. + .+|+++++||.||+|+.||.|++.+.++..+|.++... +.++++|.|||+|++ .++ .+++.|
T Consensus 300 FKi~~~~dp~~~g~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~--~~l--~~~~~G 375 (528)
T 3tr5_A 300 FKIQANMDPGHRDRIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGL--HNH--GTIQIG 375 (528)
T ss_dssp EEEEECCC-CCCCEEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEE--EES--SSCCTT
T ss_pred EEEecccCccCCceEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEE--cCC--CCCccC
Confidence 8876 2 67999999999999999999999999999999998763 668999999999985 433 347899
Q ss_pred eEEccCC
Q 010278 389 FVLSSVA 395 (514)
Q Consensus 389 ~vl~~~~ 395 (514)
|+||+.+
T Consensus 376 Dtl~~~~ 382 (528)
T 3tr5_A 376 DTFTQGE 382 (528)
T ss_dssp CEEESSC
T ss_pred CEEcCCC
Confidence 9999743
No 24
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=100.00 E-value=9.8e-36 Score=317.27 Aligned_cols=255 Identities=26% Similarity=0.341 Sum_probs=200.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe-CC
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ET 160 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~-~~ 160 (514)
++++|+++||+|||||||+++|+.... .....+|+|++.+...+.+ .+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~-------------------------------~~~~~~giT~~i~~~~v~~~~g 51 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQV-------------------------------AAMEAGGITQHIGAFLVSLPSG 51 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHH-------------------------------HHSSSCCBCCCTTSCCBCSSCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-------------------------------ccccCCceeEEEeEEEEEeCCC
Confidence 568899999999999999999954321 0223478999988888877 56
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~ 240 (514)
..++|||||||++|..++.++++.+|++|||+|+++|.+ +||.+++.++...++| +|||+||+|++..++..
T Consensus 52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~-------~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~~~ 123 (537)
T 3izy_P 52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVM-------KQTVESIQHAKDAHVP-IVLAINKCDKAEADPEK 123 (537)
T ss_dssp SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCC-------HHHHHHHHHHHTTTCC-EEECCBSGGGTTTSCCS
T ss_pred CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCc-EEEEEecccccccchHH
Confidence 789999999999999999999999999999999999965 6999999999999999 99999999995443321
Q ss_pred HHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEEEEEE
Q 010278 241 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDK 320 (514)
Q Consensus 241 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~i~~~ 320 (514)
+..........+..++ ..++++|+||++|.|+.++++. |...+.. ..+..+++.|++++|.++
T Consensus 124 --v~~~l~~~~~~~e~~~----~~~~iv~vSAktG~GI~eLle~----------I~~l~~~-~~~~~~~~~~~~~~V~e~ 186 (537)
T 3izy_P 124 --VKKELLAYDVVCEDYG----GDVQAVHVSALTGENMMALAEA----------TIALAEM-LELKADPTGAVEGTVIES 186 (537)
T ss_dssp --SSSHHHHTTSCCCCSS----SSEEECCCCSSSSCSSHHHHHH----------HHHHHTT-CCCCCCSSSSEEEEEEEE
T ss_pred --HHHHHHhhhhhHHhcC----CCceEEEEECCCCCCchhHHHH----------HHHhhhc-ccccCCCCCCcceeEEEE
Confidence 1111111111122222 2579999999999999987553 3333332 334556788999999999
Q ss_pred E--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEECC-eeeeecCCCCeEEEEccCCCcccceeeeEEccCCCC
Q 010278 321 F--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDD-NRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 397 (514)
Q Consensus 321 ~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~-~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~~ 397 (514)
+ ++.|++++|+|.+|+|++||.+.. +....+|++|+.++ .++++|.||++|++ .|++ ....+||+|+.++++
T Consensus 187 ~~~~g~G~V~~g~V~~G~l~~Gd~v~~--g~~~~kVr~i~~~~g~~v~~A~~G~~V~i--~g~~-~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 187 FTDKGRGPVTTAIIQRGTLRKGSILVA--GKSWAKVRLMFDENGRAVNEAYPSMPVGI--IGWR-DLPSAGDEILEVESE 261 (537)
T ss_dssp CCCTTCCCCEEEEEEEECCSSEEEECC--SSCCEEEEEEEECCCCCSCCSCCSTTCCC--CSSE-EEEEEESSCCSCCSS
T ss_pred EEeCCCceEEEEEEecCEEEcCCEEEe--CCceEEEEEEEcCCCCCCcEEcCCCEEEE--ECCC-CCCCCCCEEEecCCh
Confidence 8 578999999999999999998854 45668999999985 79999999999985 5665 345899999987643
No 25
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=100.00 E-value=6.3e-35 Score=308.60 Aligned_cols=248 Identities=28% Similarity=0.339 Sum_probs=194.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.++++|+++||+|||||||+++|+..... ....+|+|++.+...+.+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~-------------------------------~~e~~GIT~~i~~~~v~~~~ 50 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVA-------------------------------SGEAGGITQHIGAYHVETEN 50 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHS-------------------------------BTTBCCCCCCSSCCCCCTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCc-------------------------------cccCCCeeEeEEEEEEEECC
Confidence 46789999999999999999999542110 12347999999988898999
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~ 240 (514)
+.++|||||||++|..++.++++.+|++|||||+++|.+ +||.+++.++..+++| +|+++||||+...++.
T Consensus 51 ~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~-------~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~~~- 121 (501)
T 1zo1_I 51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVM-------PQTIEAIQHAKAAQVP-VVVAVNKIDKPEADPD- 121 (501)
T ss_dssp SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSC-------TTTHHHHHHHHHTTCC-EEEEEECSSSSTTCCC-
T ss_pred EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCcc-------HHHHHHHHHHHhcCce-EEEEEEeccccccCHH-
Confidence 999999999999999999999999999999999999965 7999999999999999 9999999999543321
Q ss_pred HHHHHHHhhhhhhhhhccCcc---cCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhh---ccCCCCCCCCCce
Q 010278 241 ERYDEIESKMTPFLKASGYNV---KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR---IEITPRDPNGPFR 314 (514)
Q Consensus 241 ~~~~~i~~~l~~~l~~~g~~~---~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~---l~~~~~~~~~p~~ 314 (514)
++...+...++.+ ...++++|+||++|.|+.++++ .+.. +..+..+++.|++
T Consensus 122 --------~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle--------------~I~~~~~~~~~~~~~~~~~~ 179 (501)
T 1zo1_I 122 --------RVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLD--------------AILLQAEVLELKAVRKGMAS 179 (501)
T ss_dssp --------CTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHH--------------HTTTTCCCSTTTSCCCSBCE
T ss_pred --------HHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhh--------------hhhhhhhhhccccccccccc
Confidence 1222222222110 1247999999999999998543 2221 2223445678899
Q ss_pred EEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC-CeeeeecCCCCeEEEEccCCCcccceeeeEE
Q 010278 315 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGFVL 391 (514)
Q Consensus 315 ~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~-~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl 391 (514)
+.|.+++ ++.|++++|+|.+|+|++||.|++++ ...+|++|... +.++++|.||++|.+. |++. ....|+++
T Consensus 180 ~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~--~~~kVr~i~~~~g~~v~~a~~g~~V~i~--gl~~-~~~~Gd~~ 254 (501)
T 1zo1_I 180 GAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGF--EYGRVRAMRNELGQEVLEAGPSIPVEIL--GLSG-VPAAGDEV 254 (501)
T ss_dssp EEEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEB--SSCEEEEECCTTTTSEEEECCSSCSSSE--EECS-CCCTTEEE
T ss_pred cceEEEEEeCCcEEEEEEEEEeeEEecCCEEEEcc--ceeEEEEEEecCCCcCcEeccCCcEEEe--CCCC-CCCCCCEE
Confidence 9999998 57899999999999999999999865 45699999864 6799999999999853 4432 24689998
Q ss_pred ccCC
Q 010278 392 SSVA 395 (514)
Q Consensus 392 ~~~~ 395 (514)
+...
T Consensus 255 ~~~~ 258 (501)
T 1zo1_I 255 TVVR 258 (501)
T ss_dssp EEEC
T ss_pred EecC
Confidence 7654
No 26
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=1.6e-32 Score=303.46 Aligned_cols=274 Identities=23% Similarity=0.264 Sum_probs=215.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+|+||+|||||||+++|++.+|.+.... . .. ...+++|..+.|+++|+|+......+.+.
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g------~-v~------~g~~~~D~~~~E~~rgiTi~~~~~~~~~~ 73 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIG------E-VH------DGAATMDWMEQEQERGITITSAATTAFWS 73 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCccccc------c-cC------CCceeecChhhHHhcCceeeeceEEEEEC
Confidence 34678999999999999999999998877654321 0 00 11356888889999999999999889888
Q ss_pred C-------eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010278 160 T-------TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 232 (514)
Q Consensus 160 ~-------~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D 232 (514)
+ +.++|||||||.+|...+.++++.+|++|+|||+..|+. .||.+++.++...++| +++++||+|
T Consensus 74 ~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-------~qt~~~~~~~~~~~ip-~ilviNKiD 145 (704)
T 2rdo_7 74 GMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQ-------PQSETVWRQANKYKVP-RIAFVNKMD 145 (704)
T ss_pred CccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCC-EEEEEeCCC
Confidence 7 999999999999999999999999999999999999854 6999999999999999 889999999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhc--------------------------cCc--------------------------
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKAS--------------------------GYN-------------------------- 260 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~--------------------------g~~-------------------------- 260 (514)
+...+ ++++.++++..|... -|.
T Consensus 146 ~~~~~-----~~~~~~~l~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 220 (704)
T 2rdo_7 146 RMGAN-----FLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQ 220 (704)
T ss_pred ccccc-----HHHHHHHHHHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHH
Confidence 95443 333333333332210 000
Q ss_pred -------------------------------------ccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhcc
Q 010278 261 -------------------------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIE 303 (514)
Q Consensus 261 -------------------------------------~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~ 303 (514)
...-+|+++.||++|.|+..+++ .+++.+|
T Consensus 221 ~l~e~~ae~dd~l~e~~l~~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd-------------~i~~~lP 287 (704)
T 2rdo_7 221 NLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLD-------------AVIDYLP 287 (704)
T ss_pred HHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHH-------------HHHHHCC
Confidence 01125788889999999887533 2344455
Q ss_pred CCCC--------------------CCCCCceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC-
Q 010278 304 ITPR--------------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD- 360 (514)
Q Consensus 304 ~~~~--------------------~~~~p~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~- 360 (514)
+|.. +.+.||.+.|.+++ +..|++++|||.||+|+.||+|+..+.+...+|.+|...
T Consensus 288 sP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~ 367 (704)
T 2rdo_7 288 SPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMH 367 (704)
T ss_pred ChhhcccccccCCcccccccccccCCCCceEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEe
Confidence 5432 25789999999998 468999999999999999999999988888999999764
Q ss_pred ---CeeeeecCCCCeEEEEccCCCcccceeeeEEccCCC
Q 010278 361 ---DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 396 (514)
Q Consensus 361 ---~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~ 396 (514)
..++++|.||++|++. |++ ++++||+|++.+.
T Consensus 368 g~~~~~v~~~~aGdIv~i~--gl~--~~~~GdTl~~~~~ 402 (704)
T 2rdo_7 368 ANKREEIKEVRAGDIAAAI--GLK--DVTTGDTLCDPDA 402 (704)
T ss_pred CCCceEcceeCCCCEEEEe--Ccc--cCccCCEEeCCCc
Confidence 5789999999999974 664 4789999998663
No 27
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=7.6e-33 Score=296.46 Aligned_cols=279 Identities=20% Similarity=0.243 Sum_probs=189.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+.++|+|+||+|+|||||+++|++..+.+....... ++.. .....+|..+.|+.+|+|+......+.+.+
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~--------~~~~-~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~ 81 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVK--------GRGS-NQHAKSDWMEMEKQRGISITTSVMQFPYHD 81 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------------------CCTTEEEEEETT
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceee--------cCcc-ccceeeccchhcccCCcceeeeEEEEEECC
Confidence 4579999999999999999999988766653211000 0000 012356777889999999999999999999
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~ 240 (514)
+.++|||||||.+|...+.++++.+|++|+|+|+..|+. .|+++++..+...++| +|+++||+|+...+. .
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~-------~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~-~ 152 (529)
T 2h5e_A 82 CLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVE-------DRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP-M 152 (529)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSC-------HHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH-H
T ss_pred eEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccch-------HHHHHHHHHHHHcCCC-EEEEEcCcCCccccH-H
Confidence 999999999999999999999999999999999999853 6999999999999999 899999999965432 2
Q ss_pred HHHHHHHhhhhhhhhh------------------------c----cC---------------------------------
Q 010278 241 ERYDEIESKMTPFLKA------------------------S----GY--------------------------------- 259 (514)
Q Consensus 241 ~~~~~i~~~l~~~l~~------------------------~----g~--------------------------------- 259 (514)
+.++++.+.+...... + |.
T Consensus 153 ~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~ 232 (529)
T 2h5e_A 153 ELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELE 232 (529)
T ss_dssp HHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccc
Confidence 2333333322100000 0 00
Q ss_pred --------------cccCCeeEEeeccccccccccccccCCCCCCCcccHHHHh-hhccCCCCC---------CCCCceE
Q 010278 260 --------------NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEAL-DRIEITPRD---------PNGPFRM 315 (514)
Q Consensus 260 --------------~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l-~~l~~~~~~---------~~~p~~~ 315 (514)
.....+|+++.||++|.|+.. |++.+ +.+|+|... .+.||.+
T Consensus 233 l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~--------------LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~ 298 (529)
T 2h5e_A 233 LVKGASNEFDKELFLAGEITPVFFGTALGNFGVDH--------------MLDGLVEWAPAPMPRQTDTRTVEASEDKFTG 298 (529)
T ss_dssp HHHHHSCCCCHHHHHTTSEEEEEECBTTTTBSHHH--------------HHHHHHHHSCSSCCEEBSSCEECTTCCSCEE
T ss_pred hhhhhhhhhhHHHHHhCceeEEEeeecccCCCHHH--------------HHHHHHHhCCCCCcccccccccCCCCCCeEE
Confidence 000123556666666666654 44443 345655321 1478888
Q ss_pred EEEEEE-----ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC----CeeeeecCCCCeEEEEccCCCcccce
Q 010278 316 PIIDKF-----KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDIL 386 (514)
Q Consensus 316 ~i~~~~-----~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~ 386 (514)
.|.++. +.+|++++|||.||+|+.||.|++.+.++..+|.+|+.+ +.++++|.||++|++ .++ .+++
T Consensus 299 ~vfKi~~~~d~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~~l--~~~~ 374 (529)
T 2h5e_A 299 FVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGL--HNH--GTIQ 374 (529)
T ss_dssp EEEEECSSCCSSSSCCCEEEEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEE--CCS--SCCC
T ss_pred EEEEEeeccCcCCCceEEEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEE--ecc--CCCc
Confidence 888874 247999999999999999999999999999999999975 678999999999985 554 4478
Q ss_pred eeeEEccCC
Q 010278 387 SGFVLSSVA 395 (514)
Q Consensus 387 ~G~vl~~~~ 395 (514)
.||+|++++
T Consensus 375 ~Gdtl~~~~ 383 (529)
T 2h5e_A 375 IGDTFTQGE 383 (529)
T ss_dssp TTCEEESSC
T ss_pred cCCEeecCC
Confidence 899999865
No 28
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=1.2e-31 Score=296.09 Aligned_cols=275 Identities=23% Similarity=0.268 Sum_probs=198.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+|+||+|||||||+++|++..+.+.... .. . .....+|..+.|+.+|+|+......+.+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g--~v-----~------~~~~~~d~~~~E~~~giTi~~~~~~~~~~ 75 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIG--EV-----H------EGAATMDFMEQERERGITITAAVTTCFWK 75 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------------------CCEEEEEET
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccc--ee-----c------CCceeccCchhhhhcccccccceEEEEEC
Confidence 35679999999999999999999998877654321 00 0 01356788889999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~ 239 (514)
++.++|||||||.+|...+.++++.+|++|+|||+..+.. .|+.+++..+...++| +++++||+|+...+
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~-------~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~-- 145 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVE-------PQSETVWRQAEKYKVP-RIAFANKMDKTGAD-- 145 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHHHHHHHTTCC-EEEEEECTTSTTCC--
T ss_pred CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcc-------hhhHHHHHHHHHcCCC-EEEEEECCCcccCC--
Confidence 9999999999999999999999999999999999999854 6899999999999999 88999999996543
Q ss_pred HHHHHHHHhhhhhhhhhc--------------------------------c-----------------------------
Q 010278 240 KERYDEIESKMTPFLKAS--------------------------------G----------------------------- 258 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~--------------------------------g----------------------------- 258 (514)
+.++.+++...+... |
T Consensus 146 ---~~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e 222 (691)
T 1dar_A 146 ---LWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAAD 222 (691)
T ss_dssp ---HHHHHHHHHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHhCCCccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhh
Confidence 223333333222100 0
Q ss_pred --------------C-------------cccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCC----
Q 010278 259 --------------Y-------------NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR---- 307 (514)
Q Consensus 259 --------------~-------------~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~---- 307 (514)
+ ....-+|+++.||++|.|+..++ ..+++.+|.|..
T Consensus 223 ~dd~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LL-------------d~i~~~lPsP~~~~~~ 289 (691)
T 1dar_A 223 FDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLL-------------DAVVDYLPSPLDIPPI 289 (691)
T ss_dssp TCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBGGGTBSHHHHH-------------HHHHHHSCCTTTSCCE
T ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCcEeEEEEeecccCcCHHHHH-------------HHHHHhCCChhhcccc
Confidence 0 00012689999999999988752 234455666543
Q ss_pred --------------CCCCCceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC----Ceeeeec
Q 010278 308 --------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHA 367 (514)
Q Consensus 308 --------------~~~~p~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a 367 (514)
+.+.||.+.|.+++ +..|+++++||.+|+|+.||+|+..+.+...+|..|... ..++++|
T Consensus 290 ~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~ 369 (691)
T 1dar_A 290 KGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEEL 369 (691)
T ss_dssp EEECSSSCEEEECCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEE
T ss_pred cccCCCccccccccCCCCCcEEEEEEEEEcCCCCcEEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEccee
Confidence 35789999999988 568999999999999999999999888888899998764 4689999
Q ss_pred CCCCeEEEEccCCCcccceeeeEEccCCCC
Q 010278 368 GPGENLRIRLSGIEEEDILSGFVLSSVAKP 397 (514)
Q Consensus 368 ~aG~~v~~~l~~~~~~~i~~G~vl~~~~~~ 397 (514)
.||++|++. |++ +++.||+|++.+.+
T Consensus 370 ~aGdI~~i~--gl~--~~~~Gdtl~~~~~~ 395 (691)
T 1dar_A 370 KAGDLGAVV--GLK--ETITGDTLVGEDAP 395 (691)
T ss_dssp ETTCEEEEE--CCS--SCCTTCEEEETTCC
T ss_pred cCCCEEEEe--Ccc--cCccCCEEecCCCc
Confidence 999999974 664 47789999986643
No 29
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=1.1e-32 Score=298.39 Aligned_cols=262 Identities=21% Similarity=0.370 Sum_probs=193.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC-
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 159 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~- 159 (514)
.+.++|+++||+|||||||+++|++.... ....+|+|++.+...+.+.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~-------------------------------~~e~ggiT~~ig~~~~~~~~ 51 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVA-------------------------------SREAGGITQHIGATEIPMDV 51 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHS-------------------------------CC----CCCBTTEEEEEHHH
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCc-------------------------------cccCCceecccCeEEEeech
Confidence 46789999999999999999999653211 0111456666555544321
Q ss_pred -----------------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCC
Q 010278 160 -----------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT 222 (514)
Q Consensus 160 -----------------~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp 222 (514)
...++|||||||++|...+.++++.+|++|||+|+++|+. +||.+++.+++..++|
T Consensus 52 ~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~-------~qT~e~l~~l~~~~vP 124 (594)
T 1g7s_A 52 IEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFK-------PQTQEALNILRMYRTP 124 (594)
T ss_dssp HHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCC-------HHHHHHHHHHHHTTCC
T ss_pred hhhhccccccccccccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-------HhHHHHHHHHHHcCCe
Confidence 2369999999999999999999999999999999999954 7999999999999999
Q ss_pred eEEEEEeeccCCCCCch------------------HHHHHHHHhhhhhhhhhccCcc---------cCCeeEEeeccccc
Q 010278 223 KLLLVVNKMDDHTVNWS------------------KERYDEIESKMTPFLKASGYNV---------KKDVQFLPISGLMG 275 (514)
Q Consensus 223 ~~IvviNK~D~~~~~~~------------------~~~~~~i~~~l~~~l~~~g~~~---------~~~~~iipiSa~~G 275 (514)
+|+|+||||+.. .|. ...+.+...++...|...++.. ...+|++|+||++|
T Consensus 125 -iIVViNKiDl~~-~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG 202 (594)
T 1g7s_A 125 -FVVAANKIDRIH-GWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITG 202 (594)
T ss_dssp -EEEEEECGGGST-TCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTC
T ss_pred -EEEEeccccccc-ccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCC
Confidence 999999999942 232 1334444445555555555421 23579999999999
Q ss_pred cccccccccCCCCCCCcccHHHHhhh-cc-CCCCCCCCCceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCc-
Q 010278 276 LNMKTRVDKSLCPWWNGPCLFEALDR-IE-ITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKA- 350 (514)
Q Consensus 276 ~gi~~l~~~~~~~w~~g~tL~~~l~~-l~-~~~~~~~~p~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~- 350 (514)
.|+.++++. |...+.. ++ ....+.+.|+++.|.+++ ++.|++++|+|.+|+|++||.|+++|.+.
T Consensus 203 ~GI~eLl~~----------I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~ 272 (594)
T 1g7s_A 203 EGIPELLTM----------LMGLAQQYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDV 272 (594)
T ss_dssp TTHHHHHHH----------HHHHHHHHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSE
T ss_pred CCchhHHHH----------HHhhccccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCc
Confidence 999987542 3333322 11 112345789999999988 57899999999999999999999999876
Q ss_pred -EEEEEEEEEC------------CeeeeecC--CCCeEEEEccCCCcccceeeeEEccCCC
Q 010278 351 -QVKVLAIYCD------------DNRVRHAG--PGENLRIRLSGIEEEDILSGFVLSSVAK 396 (514)
Q Consensus 351 -~~~V~si~~~------------~~~v~~a~--aG~~v~~~l~~~~~~~i~~G~vl~~~~~ 396 (514)
.++|++|... ..++++|. +|+.|+ +.+++ ++..|+.|+..++
T Consensus 273 ~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~--~~~l~--~~~~Gd~l~~~~~ 329 (594)
T 1g7s_A 273 ISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIV--APGID--DVMAGSPLRVVTD 329 (594)
T ss_dssp EEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEE--CSSCT--TBCTTCEEEECSS
T ss_pred eeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEE--EcccC--CCCCCCEEEecCC
Confidence 4599999763 35678888 566555 45553 4689999988764
No 30
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.97 E-value=1e-30 Score=288.87 Aligned_cols=274 Identities=22% Similarity=0.256 Sum_probs=197.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+|+||+|+|||||+++|++..+.+..... .. .....+|..+.|+.+|+|+......+.+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~-------v~------~~~~~~D~~~~e~~~giTi~~~~~~~~~~ 73 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGE-------TH------EGASQMDWMEQEQDRGITITSAATTAAWE 73 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC--------------------------------------CCSEEEEEET
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCcccccc-------cc------CCceecccchhhhhcCceEeeeeEEEEEC
Confidence 456799999999999999999999988776543210 00 01346778888999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~ 239 (514)
++.++|||||||.+|...+.+.++.+|++|+|+|+..+.. .++..++..+...++| +|+++||+|+...+
T Consensus 74 ~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~-------~~~~~~~~~~~~~~~p-~ilviNK~Dl~~~~-- 143 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVE-------PQTETVWRQATTYGVP-RIVFVNKMDKLGAN-- 143 (693)
T ss_dssp TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSC-------HHHHHHHHHHHHTTCC-EEEEEECTTSTTCC--
T ss_pred CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCc-------HHHHHHHHHHHHcCCC-EEEEEECCCccccc--
Confidence 9999999999999999999999999999999999999854 6899999999999999 88999999995443
Q ss_pred HHHHHHHHhhhhhhhhhcc--------------------------Cc---------------------------------
Q 010278 240 KERYDEIESKMTPFLKASG--------------------------YN--------------------------------- 260 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g--------------------------~~--------------------------------- 260 (514)
+.++.++++..+.... |.
T Consensus 144 ---~~~~~~~l~~~l~~~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e 220 (693)
T 2xex_A 144 ---FEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAE 220 (693)
T ss_dssp ---HHHHHHHHHHHHCCCEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHT
T ss_pred ---hHHHHHHHHHHhCCCceeEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhh
Confidence 2233333333221100 00
Q ss_pred -----------------------------ccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCC----
Q 010278 261 -----------------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR---- 307 (514)
Q Consensus 261 -----------------------------~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~---- 307 (514)
...-+|+++.||++|.|+..++ ..+++.+|.|..
T Consensus 221 ~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LL-------------d~i~~~lPsP~~~~~~ 287 (693)
T 2xex_A 221 TSDELMEKYLGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLML-------------DAVIDYLPSPLDVKPI 287 (693)
T ss_dssp TCHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHHH-------------HHHHHHSCCGGGSCCE
T ss_pred CCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeeEEEeecccCcCHHHHH-------------HHHHHHCCCchhcccc
Confidence 0012578888888888887642 223445665532
Q ss_pred ----------------CCCCCceEEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC----Ceeee
Q 010278 308 ----------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVR 365 (514)
Q Consensus 308 ----------------~~~~p~~~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~ 365 (514)
+.+.||.+.|.+++ +..|+++++||.||+|+.||+|+....+...+|.+|... ..+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~ 367 (693)
T 2xex_A 288 IGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEID 367 (693)
T ss_dssp EEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECS
T ss_pred cccCCCccccceeecCCCCCceEEEEEEeeecCCCceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEcc
Confidence 35789999999988 467999999999999999999999887888899999765 46899
Q ss_pred ecCCCCeEEEEccCCCcccceeeeEEccCCC
Q 010278 366 HAGPGENLRIRLSGIEEEDILSGFVLSSVAK 396 (514)
Q Consensus 366 ~a~aG~~v~~~l~~~~~~~i~~G~vl~~~~~ 396 (514)
+|.||++|++. |++ +++.||+|++.+.
T Consensus 368 ~~~aGdI~~i~--gl~--~~~~GdTl~~~~~ 394 (693)
T 2xex_A 368 TVYSGDIAAAV--GLK--DTGTGDTLCGEKN 394 (693)
T ss_dssp EEETTCEEEEE--SCS--SCCTTCEEEETTC
T ss_pred ccCcCCEEEEe--Ccc--cCccCCEEecCCC
Confidence 99999999974 664 4788999998663
No 31
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.97 E-value=8.3e-31 Score=288.52 Aligned_cols=275 Identities=24% Similarity=0.294 Sum_probs=212.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+..+|+|+||+|||||||+++|++..+.+... |.- .....++|....++.+|+|+......+.+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~------------G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~ 73 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERR------------GRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG 73 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSC------------CCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETT
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCcc------------cee-cCCcccccCCHHHHhcCCeEEecceEEeeCC
Confidence 456899999999999999999999877654321 110 1224567888889999999999888899999
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~ 240 (514)
+.++|+|||||.+|...+.++++.+|++++|+|+..|. ..|+++++..+...++| +|+++||+|+. .. ..
T Consensus 74 ~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~-------~~qt~~~~~~~~~~~ip-~ilv~NKiD~~-~~-~~ 143 (665)
T 2dy1_A 74 HRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGV-------QVGTERAWTVAERLGLP-RMVVVTKLDKG-GD-YY 143 (665)
T ss_dssp EEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCS-------CHHHHHHHHHHHHTTCC-EEEEEECGGGC-CC-HH
T ss_pred EEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCccc-------chhHHHHHHHHHHccCC-EEEEecCCchh-hh-HH
Confidence 99999999999999999999999999999999999984 37999999999999999 78899999995 32 22
Q ss_pred HHHHHHHhhhh-------------------------------------------------------------------hh
Q 010278 241 ERYDEIESKMT-------------------------------------------------------------------PF 253 (514)
Q Consensus 241 ~~~~~i~~~l~-------------------------------------------------------------------~~ 253 (514)
...+++.+.+. .+
T Consensus 144 ~~~~~l~~~l~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~ 223 (665)
T 2dy1_A 144 ALLEDLRSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKY 223 (665)
T ss_dssp HHHHHHHHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCcceEEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 23333333221 00
Q ss_pred hhhccCc-------------ccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCC-CCCCceEEEEE
Q 010278 254 LKASGYN-------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD-PNGPFRMPIID 319 (514)
Q Consensus 254 l~~~g~~-------------~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~-~~~p~~~~i~~ 319 (514)
+....+. ....+|++++||++|.|+..+ |..+++.++.|... .+.||.+.|.+
T Consensus 224 l~~~~l~~~~~~~~~~~~~~~~~~~pv~~~SA~~~~Gv~~L-------------l~~i~~~lp~p~~~~~~~p~~~~V~k 290 (665)
T 2dy1_A 224 LEGEEVTGEALEKAFHEAVRRGLLYPVALASGEREIGVLPL-------------LELILEALPSPTERFGDGPPLAKVFK 290 (665)
T ss_dssp HHTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHH-------------HHHHHHHSCCHHHHHCSCSCEEEEEE
T ss_pred HCCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCcCHHHH-------------HHHHHHhCCCccccCCCCCeEEEEEE
Confidence 0000000 001268999999999999874 22344556665433 67899999999
Q ss_pred EE--ccCCeEEEEEEeeeeeecCCEEEEecCCcEEEEEEEEEC----CeeeeecCCCCeEEEEccCCCcccceeeeEEcc
Q 010278 320 KF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 393 (514)
Q Consensus 320 ~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G~vl~~ 393 (514)
++ ++.|++++|||.+|+|+.||+|++.+ ...+|.+|... ..++++|.||++|++ .|++ ++++||+|++
T Consensus 291 ~~~d~~~G~~~~~rV~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i--~gl~--~~~~Gdtl~~ 364 (665)
T 2dy1_A 291 VQVDPFMGQVAYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGV--PKAE--GLHRGMVLWQ 364 (665)
T ss_dssp EEEETTTEEEEEEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEE--SSCT--TCCTTCEEES
T ss_pred EEEcCCCCeEEEEEEcccEEecCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEEE--eCCc--cCccCCEEec
Confidence 88 56899999999999999999999876 67789998763 468999999999996 4654 4789999998
Q ss_pred CCCC
Q 010278 394 VAKP 397 (514)
Q Consensus 394 ~~~~ 397 (514)
.+.+
T Consensus 365 ~~~~ 368 (665)
T 2dy1_A 365 GEKP 368 (665)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 6653
No 32
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.96 E-value=5.4e-28 Score=272.21 Aligned_cols=290 Identities=19% Similarity=0.262 Sum_probs=198.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
...+.++|+|+||+|||||||+++|++..|.+.... .| ....+|..+.|+++|+|+......+.+
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~~-----~~~~~D~~~~E~~rgiTI~~~~~~~~~ 79 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAK----------AG-----EARFTDTRKDEQERGITIKSTAISLYS 79 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC---------------------------------CCCBCCCEEEEEE
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCccccc----------CC-----CceeecCchhhhhcceeEeeceeEEEe
Confidence 345678999999999999999999999888776432 01 124578888999999999988777766
Q ss_pred C----------------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCC
Q 010278 159 E----------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT 222 (514)
Q Consensus 159 ~----------------~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp 222 (514)
. ++.++|||||||.+|...+.++++.+|++|+|||+.+|+. .|+..++..+...++|
T Consensus 80 ~~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~-------~qt~~~~~~~~~~~~p 152 (842)
T 1n0u_A 80 EMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVC-------VQTETVLRQALGERIK 152 (842)
T ss_dssp ECCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSC-------HHHHHHHHHHHHTTCE
T ss_pred cccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC
Confidence 5 6889999999999999999999999999999999999854 6899999998889999
Q ss_pred eEEEEEeeccCCCCC--ch----HHHHHHHHhhhhhhhhhcc--------CcccCCeeEEeecccccccccc--------
Q 010278 223 KLLLVVNKMDDHTVN--WS----KERYDEIESKMTPFLKASG--------YNVKKDVQFLPISGLMGLNMKT-------- 280 (514)
Q Consensus 223 ~~IvviNK~D~~~~~--~~----~~~~~~i~~~l~~~l~~~g--------~~~~~~~~iipiSa~~G~gi~~-------- 280 (514)
+|+++||||+...+ ++ ...++.+.++++..+..+. +.+. ..++...||++|+++.-
T Consensus 153 -~ilviNK~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~-~~~v~~~sa~~g~~~~~~~f~~~y~ 230 (842)
T 1n0u_A 153 -PVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPA-RGTVAFGSGLHGWAFTIRQFATRYA 230 (842)
T ss_dssp -EEEEEECHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGG-GTCEEEEETTTTEEEEHHHHHHHHH
T ss_pred -eEEEEECCCcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceE-EeeeEEeecccccccchhhhhhhcc
Confidence 88999999984211 11 3446667777776664321 2210 12566679988876420
Q ss_pred -ccc-----cCCCCCC----C----------------------------------------------------c------
Q 010278 281 -RVD-----KSLCPWW----N----------------------------------------------------G------ 292 (514)
Q Consensus 281 -l~~-----~~~~~w~----~----------------------------------------------------g------ 292 (514)
.+. .....|. + |
T Consensus 231 ~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~ 310 (842)
T 1n0u_A 231 KKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGD 310 (842)
T ss_dssp TTTTSCHHHHHHHTSSSCEEETTTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGG
T ss_pred hhcCCCHHHHHHHHhccccccCCCCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHH
Confidence 000 0000120 0 0
Q ss_pred ---------------------ccHHH-HhhhccCCC-------------------------CCCCCCceEEEEEEE--cc
Q 010278 293 ---------------------PCLFE-ALDRIEITP-------------------------RDPNGPFRMPIIDKF--KD 323 (514)
Q Consensus 293 ---------------------~tL~~-~l~~l~~~~-------------------------~~~~~p~~~~i~~~~--~~ 323 (514)
..|++ +++.+|+|. ++.++||.+.|.+++ +.
T Consensus 311 e~~~~~~~l~~~~~~~~~pv~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~ 390 (842)
T 1n0u_A 311 EKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSD 390 (842)
T ss_dssp GGGCCHHHHHHHHHHHHSBHHHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSS
T ss_pred HHhhhhHHHHHHHHhhccchHHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCC
Confidence 12222 223345442 356789999999987 46
Q ss_pred CCe-EEEEEEeeeeeecCCEEEEecCC------c---EEEEEEEEEC----CeeeeecCCCCeEEEEccCCCcccceeee
Q 010278 324 MGT-VVMGKVESGSVREGDSLLVMPNK------A---QVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGF 389 (514)
Q Consensus 324 ~G~-v~~g~v~sG~l~~gd~v~~~p~~------~---~~~V~si~~~----~~~v~~a~aG~~v~~~l~~~~~~~i~~G~ 389 (514)
.|. +.++||.||+|+.||.|.+...+ . ..+|..|... ..++++|.||++|++ .|++...++.|
T Consensus 391 ~G~~l~~~RV~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai--~gl~~~~~~t~- 467 (842)
T 1n0u_A 391 KGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGL--VGIDQFLLKTG- 467 (842)
T ss_dssp TTCEEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEE--ESCTTTCCSSE-
T ss_pred CCceEEEEEEEeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEE--Eccccceecce-
Confidence 796 89999999999999999876432 2 5788888765 468999999999984 67655434556
Q ss_pred EEccCC
Q 010278 390 VLSSVA 395 (514)
Q Consensus 390 vl~~~~ 395 (514)
+||+.+
T Consensus 468 Tl~~~~ 473 (842)
T 1n0u_A 468 TLTTSE 473 (842)
T ss_dssp EEESCT
T ss_pred eecCCC
Confidence 888754
No 33
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.83 E-value=7.1e-21 Score=173.85 Aligned_cols=158 Identities=27% Similarity=0.373 Sum_probs=114.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+.++|+++|.+++|||||+++|+...- . .....++|.+.....+..++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~ 54 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKV--T-----------------------------EQEAGGITQHIGAYQVTVND 54 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCS--S-----------------------------CSSCCSSSTTCCCCEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcc--c-----------------------------cCCCCceeEeeeEEEEEeCC
Confidence 4678999999999999999999953211 1 11123455555556677788
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 240 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~ 240 (514)
..+.|+||||+++|...+.+.+..+|++|+|+|++.+.. .++.+.+..+...++| +++|+||+|+... +.
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-------~~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~--~~ 124 (178)
T 2lkc_A 55 KKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVM-------PQTVEAINHAKAANVP-IIVAINKMDKPEA--NP 124 (178)
T ss_dssp EEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCC-------HHHHHHHHHHGGGSCC-EEEEEETTTSSCS--CH
T ss_pred ceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHhCCCC-EEEEEECccCCcC--CH
Confidence 999999999999998777777889999999999988743 4777777777777899 9999999999432 22
Q ss_pred HHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 241 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 241 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
........+...+...++ ..++++++||++|.|+.++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gv~~l~~ 163 (178)
T 2lkc_A 125 DRVMQELMEYNLVPEEWG----GDTIFCKLSAKTKEGLDHLLE 163 (178)
T ss_dssp HHHHHHHTTTTCCBTTTT----SSEEEEECCSSSSHHHHHHHH
T ss_pred HHHHHHHHhcCcChhHcC----CcccEEEEecCCCCCHHHHHH
Confidence 222222222222222221 136899999999999998754
No 34
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.82 E-value=3.6e-20 Score=194.63 Aligned_cols=158 Identities=19% Similarity=0.290 Sum_probs=115.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
...++|+++|++|+|||||+|+|++..... .....|+|.+.....+.+++
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~------------------------------~~~~~gtT~d~~~~~~~~~~ 222 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVI------------------------------VSNVAGTTRDAVDTSFTYNQ 222 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEE------------------------------EC---------CCEEEEETT
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCceeeeeEEEEEECC
Confidence 356899999999999999999996432211 22347888888888889999
Q ss_pred eEEEEEeCCCC----------cchHHH-HHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe
Q 010278 161 TRFTILDAPGH----------KSYVPN-MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 229 (514)
Q Consensus 161 ~~i~liDtPGh----------~~f~~~-~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviN 229 (514)
..+.||||||+ +.|... .+..+..+|++|+|+|+.++.. .|+.+++..+...++| +|+|+|
T Consensus 223 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s-------~~~~~~~~~~~~~~~~-iiiv~N 294 (436)
T 2hjg_A 223 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGII-------EQDKRIAGYAHEAGKA-VVIVVN 294 (436)
T ss_dssp EEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCC-------HHHHHHHHHHHHTTCE-EEEEEE
T ss_pred eEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCc-------HHHHHHHHHHHHcCCc-EEEEEE
Confidence 99999999998 445333 3457789999999999999854 4788888888888988 999999
Q ss_pred eccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 230 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 230 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|+|+. +.....++++.+++...+...+ .++++++||++|.|+.++++
T Consensus 295 K~Dl~--~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~SA~tg~~v~~l~~ 341 (436)
T 2hjg_A 295 KWDAV--DKDESTMKEFEENIRDHFQFLD-----YAPILFMSALTKKRIHTLMP 341 (436)
T ss_dssp CGGGS--CCCTTHHHHHHHHHHHHCGGGT-----TSCEEECCTTTCTTGGGHHH
T ss_pred CccCC--CcchHHHHHHHHHHHHhcccCC-----CCCEEEEecccCCCHHHHHH
Confidence 99994 3333345556666665555443 46899999999999998754
No 35
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.80 E-value=1.6e-19 Score=190.84 Aligned_cols=159 Identities=20% Similarity=0.310 Sum_probs=122.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
....++|+++|++|+|||||+++|+...... .....|+|.+.....+..+
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~------------------------------~~~~~gtt~~~~~~~~~~~ 241 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVI------------------------------VSNVAGTTRDAVDTSFTYN 241 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEE------------------------------ECC------CTTSEEEEET
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccc------------------------------cCCCCCeEEEEEEEEEEEC
Confidence 3467899999999999999999996432211 2233678888877888899
Q ss_pred CeEEEEEeCCC----------CcchHHH-HHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEE
Q 010278 160 TTRFTILDAPG----------HKSYVPN-MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVV 228 (514)
Q Consensus 160 ~~~i~liDtPG----------h~~f~~~-~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~Ivvi 228 (514)
+..++|||||| +++|... .+..+..+|++|+|+|+.++.. .|+.+++.++...++| +|+|+
T Consensus 242 ~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~-------~~~~~~~~~~~~~~~~-~ilv~ 313 (456)
T 4dcu_A 242 QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGII-------EQDKRIAGYAHEAGKA-VVIVV 313 (456)
T ss_dssp TEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCC-------HHHHHHHHHHHHTTCE-EEEEE
T ss_pred CceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcC-------HHHHHHHHHHHHcCCC-EEEEE
Confidence 99999999999 5667544 4457789999999999999854 5889999999999988 99999
Q ss_pred eeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 229 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 229 NK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
||||+ .+.....++++.+.+...+...+ .++++++||++|.|+.++++
T Consensus 314 NK~Dl--~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~SA~~g~gv~~l~~ 361 (456)
T 4dcu_A 314 NKWDA--VDKDESTMKEFEENIRDHFQFLD-----YAPILFMSALTKKRIHTLMP 361 (456)
T ss_dssp ECGGG--SCCCSSHHHHHHHHHHHHCGGGT-----TSCEEECCTTTCTTGGGHHH
T ss_pred EChhc--CCCchHHHHHHHHHHHHhcccCC-----CCCEEEEcCCCCcCHHHHHH
Confidence 99999 43344556677777777666554 36899999999999998765
No 36
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.80 E-value=2.2e-19 Score=170.60 Aligned_cols=161 Identities=17% Similarity=0.166 Sum_probs=111.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEE-e
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-T 158 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~-~ 158 (514)
....++|+++|++|+|||||+++|+..... . ......|.|.+.....+. .
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~-~----------------------------~~~~~~~~t~~~~~~~~~~~ 76 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRL-A----------------------------FASKTPGRTQHINYFSVGPA 76 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSS-S----------------------------CTTCCCCSCCCEEEEEESCT
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcc-e----------------------------eecCCCCcccceEEEEecCC
Confidence 345689999999999999999999543210 0 011224566665555555 5
Q ss_pred CCeEEEEEeCCCCc-------------chHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEE
Q 010278 159 ETTRFTILDAPGHK-------------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL 225 (514)
Q Consensus 159 ~~~~i~liDtPGh~-------------~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~I 225 (514)
.+..+.|+||||+. .++...++....+|++|+|+|+.++.. ....+.+..+...++| +|
T Consensus 77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~l~~~~~p-~i 148 (223)
T 4dhe_A 77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLT-------ELDRRMIEWFAPTGKP-IH 148 (223)
T ss_dssp TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHGGGCCC-EE
T ss_pred CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCC-EE
Confidence 57899999999962 234455555667999999999998742 4566677777778898 99
Q ss_pred EEEeeccCCCCCchHHHHHHHHhhhhhhhhhc---cCcccCCeeEEeeccccccccccccc
Q 010278 226 LVVNKMDDHTVNWSKERYDEIESKMTPFLKAS---GYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 226 vviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~---g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+|+||+|+.. ........+.+...+... +. ....+++++||++|.|+.++++
T Consensus 149 ~v~nK~Dl~~----~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~SA~~g~gv~~l~~ 203 (223)
T 4dhe_A 149 SLLTKCDKLT----RQESINALRATQKSLDAYRDAGY--AGKLTVQLFSALKRTGLDDAHA 203 (223)
T ss_dssp EEEECGGGSC----HHHHHHHHHHHHHHHHHHHHHTC--CSCEEEEEEBTTTTBSHHHHHH
T ss_pred EEEeccccCC----hhhHHHHHHHHHHHHHhhhhccc--CCCCeEEEeecCCCcCHHHHHH
Confidence 9999999942 233334444444444443 11 1257999999999999998643
No 37
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.80 E-value=7e-19 Score=176.29 Aligned_cols=156 Identities=21% Similarity=0.225 Sum_probs=112.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
+.++-.|+++|++|+|||||+|+|+.....+ .....+.|.+.....+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i------------------------------~s~~~~tT~~~~~~~~~~~ 56 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSI------------------------------ISPKAGTTRMRVLGVKNIP 56 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC------------------------------CCSSSCCCCSCEEEEEEET
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccc------------------------------cCCCCCceeeEEEEEEecC
Confidence 4567889999999999999999996433221 1122566666666667777
Q ss_pred -CeEEEEEeCCCCcc----------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHH-HHHHHHcCCCeEEEE
Q 010278 160 -TTRFTILDAPGHKS----------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH-VMLAKTLGVTKLLLV 227 (514)
Q Consensus 160 -~~~i~liDtPGh~~----------f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~-l~~~~~~~vp~~Ivv 227 (514)
+.+++|+||||+.+ |...+...+..+|++|+|+|+.++.. .++... +..+...++| +|+|
T Consensus 57 ~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~-------~~~~~~~~~~l~~~~~p-vilV 128 (308)
T 3iev_A 57 NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWR-------PRDEEIYQNFIKPLNKP-VIVV 128 (308)
T ss_dssp TTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSC-------HHHHHHHHHHTGGGCCC-EEEE
T ss_pred CCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCC-------chhHHHHHHHHHhcCCC-EEEE
Confidence 89999999999854 34666677889999999999998743 456666 6777778898 8999
Q ss_pred EeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 228 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 228 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+||+|+.. + ........+.+.. .++ ...+++|+||++|.|+.++++
T Consensus 129 ~NK~Dl~~-~--~~~~~~~~~~l~~---~~~----~~~~i~~vSA~~g~gv~~L~~ 174 (308)
T 3iev_A 129 INKIDKIG-P--AKNVLPLIDEIHK---KHP----ELTEIVPISALKGANLDELVK 174 (308)
T ss_dssp EECGGGSS-S--GGGGHHHHHHHHH---HCT----TCCCEEECBTTTTBSHHHHHH
T ss_pred EECccCCC-C--HHHHHHHHHHHHH---hcc----CCCeEEEEeCCCCCCHHHHHH
Confidence 99999941 1 1222233333322 222 125899999999999998644
No 38
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.78 E-value=1.7e-18 Score=172.78 Aligned_cols=151 Identities=18% Similarity=0.129 Sum_probs=105.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+...|+++|++|+|||||+|+|++....+.. ...+.|.+.....+...+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs------------------------------~~~~tTr~~i~~i~~~~~ 54 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPIS------------------------------PRPQTTRKRLRGILTEGR 54 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCC------------------------------SSSCCCCSCEEEEEEETT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeec------------------------------CCCCceeEEEEEEEEeCC
Confidence 45678999999999999999999654322110 112333333333455678
Q ss_pred eEEEEEeCCCCcc--------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEee
Q 010278 161 TRFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNK 230 (514)
Q Consensus 161 ~~i~liDtPGh~~--------f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~vp~~IvviNK 230 (514)
.+++|+||||+.+ |.......+..+|++|+|+|++++.. .++...+..+... ++| +|+|+||
T Consensus 55 ~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~-------~~~~~i~~~l~~~~~~~p-~ilV~NK 126 (301)
T 1wf3_A 55 RQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPT-------PEDELVARALKPLVGKVP-ILLVGNK 126 (301)
T ss_dssp EEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCC-------HHHHHHHHHHGGGTTTSC-EEEEEEC
T ss_pred cEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCC-------hHHHHHHHHHHhhcCCCC-EEEEEEC
Confidence 9999999999877 56666777889999999999998732 3555566667766 888 8999999
Q ss_pred ccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 231 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 231 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+|+... ... +.+.+..+ .+ ..+++|+||++|.|+.++++
T Consensus 127 ~Dl~~~--~~~----~~~~~~~~---~~-----~~~~~~iSA~~g~gv~~l~~ 165 (301)
T 1wf3_A 127 LDAAKY--PEE----AMKAYHEL---LP-----EAEPRMLSALDERQVAELKA 165 (301)
T ss_dssp GGGCSS--HHH----HHHHHHHT---ST-----TSEEEECCTTCHHHHHHHHH
T ss_pred cccCCc--hHH----HHHHHHHh---cC-----cCcEEEEeCCCCCCHHHHHH
Confidence 999432 110 22222222 22 24799999999999988643
No 39
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.78 E-value=2.6e-18 Score=153.87 Aligned_cols=145 Identities=21% Similarity=0.292 Sum_probs=101.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
++|+++|++++|||||+++|....... .....+.|.+.....+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAV------------------------------VADVPGVTRDLKEGVVETDRGRF 51 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------------------------------------CCEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeee------------------------------ccCCCCceecceEEEEEeCCceE
Confidence 689999999999999999995432110 11224566666666777788899
Q ss_pred EEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCC
Q 010278 164 TILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 164 ~liDtPGh~~-------f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~ 236 (514)
.|+||||+.. +.......+..+|++|+|+|+..+.. ....+....+...++| +++|+||+|+...
T Consensus 52 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 52 LLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELT-------QADYEVAEYLRRKGKP-VILVATKVDDPKH 123 (161)
T ss_dssp EEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCC-------HHHHHHHHHHHHHTCC-EEEEEECCCSGGG
T ss_pred EEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCccc-------HhHHHHHHHHHhcCCC-EEEEEECcccccc
Confidence 9999999987 45555666789999999999998632 2445566666777888 9999999999321
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
.+++..+. ++++ .+++++||++|.|+.+++
T Consensus 124 ----------~~~~~~~~-~~~~-----~~~~~~Sa~~~~gv~~l~ 153 (161)
T 2dyk_A 124 ----------ELYLGPLY-GLGF-----GDPIPTSSEHARGLEELL 153 (161)
T ss_dssp ----------GGGCGGGG-GGSS-----CSCEECBTTTTBSHHHHH
T ss_pred ----------hHhHHHHH-hCCC-----CCeEEEecccCCChHHHH
Confidence 12333333 4443 278999999999999864
No 40
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.78 E-value=4.1e-19 Score=175.05 Aligned_cols=148 Identities=20% Similarity=0.253 Sum_probs=106.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
+.++|+++|++|+|||||+|+|.+... ......|+|++.....+.+.+.
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~-------------------------------~v~~~~g~t~~~~~~~~~~~~~ 50 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-------------------------------RVGNWAGVTVERKEGQFSTTDH 50 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE-------------------------------EEEECTTSSSEEEEEEEECSSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc-------------------------------ccCCCCCeeEEEEEEEEEeCCC
Confidence 458999999999999999999943211 0223368888888888888899
Q ss_pred EEEEEeCCCCcchHH------------HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe
Q 010278 162 RFTILDAPGHKSYVP------------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 229 (514)
Q Consensus 162 ~i~liDtPGh~~f~~------------~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviN 229 (514)
.+.|+||||+.+|.. ........+|++|+|+|+... ......+..+..+++| +|+|+|
T Consensus 51 ~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~---------~~~~~~~~~l~~~~~p-~ivv~N 120 (274)
T 3i8s_A 51 QVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL---------ERNLYLTLQLLELGIP-CIVALN 120 (274)
T ss_dssp EEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH---------HHHHHHHHHHHHHTCC-EEEEEE
T ss_pred ceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh---------HHHHHHHHHHHhcCCC-EEEEEE
Confidence 999999999988651 111123689999999999863 2455666677778999 999999
Q ss_pred eccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 230 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 230 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|+|+.... .+...+..+.+.+| +|++++||++|.|+.++++
T Consensus 121 K~Dl~~~~-------~~~~~~~~l~~~lg------~~~i~~SA~~g~gi~el~~ 161 (274)
T 3i8s_A 121 MLDIAEKQ-------NIRIEIDALSARLG------CPVIPLVSTRGRGIEALKL 161 (274)
T ss_dssp CHHHHHHT-------TEEECHHHHHHHHT------SCEEECCCGGGHHHHHHHH
T ss_pred Cccchhhh-------hHHHHHHHHHHhcC------CCEEEEEcCCCCCHHHHHH
Confidence 99983211 00111222233333 5899999999999998643
No 41
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.77 E-value=3.5e-19 Score=173.73 Aligned_cols=146 Identities=21% Similarity=0.190 Sum_probs=103.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
++|+++|++|+|||||+|+|.+... ......|+|++.....+.+.+..+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~-------------------------------~v~~~pg~Tv~~~~~~~~~~~~~~ 50 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ-------------------------------RVGNWPGVTVEKKTGEFLLGEHLI 50 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE-------------------------------EEEECTTSSSEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-------------------------------CccCCCCceEEEEEEEEEECCeEE
Confidence 5899999999999999999943210 122336888888888888899999
Q ss_pred EEEeCCCCcchHHH---------HHH-hh--hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeec
Q 010278 164 TILDAPGHKSYVPN---------MIS-GA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 231 (514)
Q Consensus 164 ~liDtPGh~~f~~~---------~~~-g~--~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~ 231 (514)
.|+||||+.+|... +.+ .+ ..+|++|+|+|++.. .........+..+++| +|+|+||+
T Consensus 51 ~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~---------~~~~~l~~~l~~~~~p-vilv~NK~ 120 (256)
T 3iby_A 51 EITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL---------ERHLYLTSQLFELGKP-VVVALNMM 120 (256)
T ss_dssp EEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH---------HHHHHHHHHHTTSCSC-EEEEEECH
T ss_pred EEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc---------hhHHHHHHHHHHcCCC-EEEEEECh
Confidence 99999999887542 111 12 679999999999863 2445555666777899 99999999
Q ss_pred cCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 232 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 232 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|+..... +...+..+.+.+| +|++++||++|.|+.++++
T Consensus 121 Dl~~~~~-------~~~~~~~l~~~lg------~~vi~~SA~~g~gi~el~~ 159 (256)
T 3iby_A 121 DIAEHRG-------ISIDTEKLESLLG------CSVIPIQAHKNIGIPALQQ 159 (256)
T ss_dssp HHHHHTT-------CEECHHHHHHHHC------SCEEECBGGGTBSHHHHHH
T ss_pred hcCCcCC-------cHHHHHHHHHHcC------CCEEEEECCCCCCHHHHHH
Confidence 9832110 1111222223333 5899999999999998543
No 42
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.76 E-value=7.2e-19 Score=171.70 Aligned_cols=148 Identities=17% Similarity=0.203 Sum_probs=106.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+.++|+++|++|+|||||+++|.+..- ......|+|++.....+...+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~-------------------------------~~~~~pg~tv~~~~~~~~~~~ 51 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQ-------------------------------YVANWPGVTVEKKEGVFTYKG 51 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCE-------------------------------EEEECTTSCCEEEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCC-------------------------------cccCCCCceEEEEEEEEEECC
Confidence 4568999999999999999999943210 012236889888888888889
Q ss_pred eEEEEEeCCCCcchHH---------HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeec
Q 010278 161 TRFTILDAPGHKSYVP---------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 231 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~---------~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~ 231 (514)
..+.|+||||+.+|.. ..+. ...+|++|+|+|++... .....+..+..+++| +|+|+||+
T Consensus 52 ~~~~l~DtpG~~~~~~~~~~e~v~~~~~~-~~~~d~ii~V~D~t~~~---------~~~~~~~~l~~~~~p-vilv~NK~ 120 (258)
T 3a1s_A 52 YTINLIDLPGTYSLGYSSIDEKIARDYLL-KGDADLVILVADSVNPE---------QSLYLLLEILEMEKK-VILAMTAI 120 (258)
T ss_dssp EEEEEEECCCCSSCCSSSHHHHHHHHHHH-HSCCSEEEEEEETTSCH---------HHHHHHHHHHTTTCC-EEEEEECH
T ss_pred eEEEEEECCCcCccCCCCHHHHHHHHHHh-hcCCCEEEEEeCCCchh---------hHHHHHHHHHhcCCC-EEEEEECc
Confidence 9999999999987742 2221 15799999999998741 344455666777999 99999999
Q ss_pred cCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 232 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 232 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|+.... .+......+.+.+| +|++++||++|.|+.++++
T Consensus 121 Dl~~~~-------~i~~~~~~l~~~lg------~~vi~~SA~~g~gi~el~~ 159 (258)
T 3a1s_A 121 DEAKKT-------GMKIDRYELQKHLG------IPVVFTSSVTGEGLEELKE 159 (258)
T ss_dssp HHHHHT-------TCCBCHHHHHHHHC------SCEEECCTTTCTTHHHHHH
T ss_pred CCCCcc-------chHHHHHHHHHHcC------CCEEEEEeeCCcCHHHHHH
Confidence 983111 11112233334443 5899999999999998654
No 43
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.76 E-value=7.4e-18 Score=153.69 Aligned_cols=154 Identities=16% Similarity=0.100 Sum_probs=100.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
.++.++|+++|++|+|||||+++|....- ... .....|. +.....+...
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~--~~~---------------------------~~~t~~~--~~~~~~~~~~ 51 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETF--GKQ---------------------------YKQTIGL--DFFLRRITLP 51 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGT--THH---------------------------HHHTTTS--SEEEEEEEET
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcC--CCC---------------------------CCCceeE--EEEEEEEEeC
Confidence 34678999999999999999999954321 000 0011222 2222334444
Q ss_pred C---eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-----CCCeEEEEEeec
Q 010278 160 T---TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----GVTKLLLVVNKM 231 (514)
Q Consensus 160 ~---~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~-----~vp~~IvviNK~ 231 (514)
+ ..+.|+||||+++|...+...+..+|++|+|+|++.... + ......+..+... +.|.+++|+||+
T Consensus 52 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~~~~iilv~nK~ 125 (178)
T 2hxs_A 52 GNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQS---F---ENLEDWYTVVKKVSEESETQPLVALVGNKI 125 (178)
T ss_dssp TTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHHHHHTCCCEEEEEEECG
T ss_pred CCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhcccCCCCeEEEEEEcc
Confidence 4 789999999999998877788899999999999987532 1 1223333333332 667678999999
Q ss_pred cCCCCC-chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 232 DDHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 232 D~~~~~-~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|+.... .+. ++...+.+..+ ++++++||++|.|+.++++
T Consensus 126 Dl~~~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 165 (178)
T 2hxs_A 126 DLEHMRTIKP-------EKHLRFCQENG------FSSHFVSAKTGDSVFLCFQ 165 (178)
T ss_dssp GGGGGCSSCH-------HHHHHHHHHHT------CEEEEECTTTCTTHHHHHH
T ss_pred ccccccccCH-------HHHHHHHHHcC------CcEEEEeCCCCCCHHHHHH
Confidence 984211 111 12223333333 5799999999999998644
No 44
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.76 E-value=1.1e-18 Score=171.73 Aligned_cols=148 Identities=20% Similarity=0.192 Sum_probs=105.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
+.++|+++|++|+|||||+++|.+... ......|+|++.....+.+.+.
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~ 50 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-------------------------------HVGNWPGVTVEKKEGIMEYREK 50 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-------------------------------EEEECTTSSCEEEEEEEEETTE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-------------------------------ccCCCCCeEEEeeEEEEEECCc
Confidence 468999999999999999999943211 1223478888888888999999
Q ss_pred EEEEEeCCCCcchHHH--------HHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcC-CCeEEEEEeecc
Q 010278 162 RFTILDAPGHKSYVPN--------MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG-VTKLLLVVNKMD 232 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~--------~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~-vp~~IvviNK~D 232 (514)
.+.|+||||+.+|... .......+|++|+|+|++.+ .+....+..+..++ +| +++|+||+|
T Consensus 51 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~---------~~~~~~~~~~~~~~~~p-~ilv~NK~D 120 (271)
T 3k53_A 51 EFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL---------MRNLFLTLELFEMEVKN-IILVLNKFD 120 (271)
T ss_dssp EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH---------HHHHHHHHHHHHTTCCS-EEEEEECHH
T ss_pred eEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc---------hhhHHHHHHHHhcCCCC-EEEEEEChh
Confidence 9999999999887431 11112579999999999875 24555666667778 88 999999999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+.... .+......+.+.+| +|++|+||++|.|+.++++
T Consensus 121 l~~~~-------~~~~~~~~l~~~lg------~~~~~~Sa~~g~gi~~l~~ 158 (271)
T 3k53_A 121 LLKKK-------GAKIDIKKMRKELG------VPVIPTNAKKGEGVEELKR 158 (271)
T ss_dssp HHHHH-------TCCCCHHHHHHHHS------SCEEECBGGGTBTHHHHHH
T ss_pred cCccc-------ccHHHHHHHHHHcC------CcEEEEEeCCCCCHHHHHH
Confidence 72110 01111222223333 5899999999999988654
No 45
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.75 E-value=1.6e-18 Score=173.04 Aligned_cols=153 Identities=17% Similarity=0.173 Sum_probs=104.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+...|+++||+|+|||||+++|++....+.. ...+.|.+.....+.+++
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s------------------------------~~~~tTr~~~~gi~~~~~ 55 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITS------------------------------RKAQTTRHRIVGIHTEGA 55 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECC------------------------------CCSSCCSSCEEEEEEETT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccC------------------------------CCCCcceeeEEEEEEECC
Confidence 45678999999999999999999653221110 012333333333466788
Q ss_pred eEEEEEeCCCCc-ch--------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeec
Q 010278 161 TRFTILDAPGHK-SY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 231 (514)
Q Consensus 161 ~~i~liDtPGh~-~f--------~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~ 231 (514)
.+++|+||||+. .+ ......++..+|++++|+|+.. .. ++++..+..+...+.| +|+++||+
T Consensus 56 ~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~-------~~~~~i~~~l~~~~~P-~ilvlNK~ 126 (301)
T 1ega_A 56 YQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WT-------PDDEMVLNKLREGKAP-VILAVNKV 126 (301)
T ss_dssp EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CC-------HHHHHHHHHHHSSSSC-EEEEEEST
T ss_pred eeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CC-------HHHHHHHHHHHhcCCC-EEEEEECc
Confidence 999999999997 32 2223445678999999999976 32 5677777777777889 88999999
Q ss_pred cCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 232 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 232 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|+.. ....+.+ .+..+.+.+++ .+++|+||++|.|+.++.+
T Consensus 127 D~~~---~~~~~~~---~l~~l~~~~~~-----~~~i~iSA~~g~~v~~l~~ 167 (301)
T 1ega_A 127 DNVQ---EKADLLP---HLQFLASQMNF-----LDIVPISAETGLNVDTIAA 167 (301)
T ss_dssp TTCC---CHHHHHH---HHHHHHTTSCC-----SEEEECCTTTTTTHHHHHH
T ss_pred ccCc---cHHHHHH---HHHHHHHhcCc-----CceEEEECCCCCCHHHHHH
Confidence 9832 1223322 23333333443 2789999999999988644
No 46
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.75 E-value=5.4e-18 Score=156.82 Aligned_cols=154 Identities=18% Similarity=0.260 Sum_probs=105.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
....++|+++|.+|+|||||+++|+...... .....|.|...... ..
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------------------------~~~~~~~t~~~~~~---~~ 66 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAF------------------------------VSKTPGKTRSINFY---LV 66 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC------------------------------CCSSCCCCCCEEEE---EE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCcccc------------------------------ccCCCCCccCeEEE---EE
Confidence 3456899999999999999999995432110 11113444433222 22
Q ss_pred CeEEEEEeCCC----------Ccch---HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEE
Q 010278 160 TTRFTILDAPG----------HKSY---VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 226 (514)
Q Consensus 160 ~~~i~liDtPG----------h~~f---~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~Iv 226 (514)
+..+.|+|||| ++.| .....+.+..+|++++|+|+..+.. ....+.+..+...++| +++
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~i~ 138 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQ-------DSDLMMVEWMKSLNIP-FTI 138 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHHHTTCC-EEE
T ss_pred CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCC-------HHHHHHHHHHHHcCCC-EEE
Confidence 45788999999 3333 4445555667799999999987632 3555666777888999 999
Q ss_pred EEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 227 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 227 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|+||+|+... ...+...+++..++...+ .++++++||++|.|+.++++
T Consensus 139 v~nK~Dl~~~----~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~l~~ 186 (195)
T 3pqc_A 139 VLTKMDKVKM----SERAKKLEEHRKVFSKYG-----EYTIIPTSSVTGEGISELLD 186 (195)
T ss_dssp EEECGGGSCG----GGHHHHHHHHHHHHHSSC-----CSCEEECCTTTCTTHHHHHH
T ss_pred EEEChhcCCh----HHHHHHHHHHHHHHhhcC-----CCceEEEecCCCCCHHHHHH
Confidence 9999999422 234455566666665543 36899999999999998644
No 47
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.75 E-value=1.6e-17 Score=151.24 Aligned_cols=154 Identities=16% Similarity=0.175 Sum_probs=100.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|++|+|||||+++|+...- . ......++.+.....+..+
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~ 52 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKF--D-----------------------------TQLFHTIGVEFLNKDLEVD 52 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCC--C-----------------------------C----CCSEEEEEEEEEET
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCC--C-----------------------------CCCCCceeeeEEEEEEEEC
Confidence 34678999999999999999999953211 1 0111222333333344455
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-------cCCCeEEEEEee
Q 010278 160 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-------LGVTKLLLVVNK 230 (514)
Q Consensus 160 ~--~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~-------~~vp~~IvviNK 230 (514)
+ ..+.|+||||+++|...+...+..+|++|+|+|+..+.. ++ .....+..+.. .++| +++|+||
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK 125 (177)
T 1wms_A 53 GHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQS---FQ---NLSNWKKEFIYYADVKEPESFP-FVILGNK 125 (177)
T ss_dssp TEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHTCSCTTTSC-EEEEEEC
T ss_pred CEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHH---HH---HHHHHHHHHHHHccccccCCCc-EEEEEEC
Confidence 4 589999999999999888888899999999999987532 11 11222222221 4677 8999999
Q ss_pred ccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 231 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 231 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+|+.......+ ++..+++.. ..++++++||++|.|+.++++
T Consensus 126 ~Dl~~~~~~~~-------~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~ 166 (177)
T 1wms_A 126 IDISERQVSTE-------EAQAWCRDN-----GDYPYFETSAKDATNVAAAFE 166 (177)
T ss_dssp TTCSSCSSCHH-------HHHHHHHHT-----TCCCEEECCTTTCTTHHHHHH
T ss_pred CcccccccCHH-------HHHHHHHhc-----CCceEEEEeCCCCCCHHHHHH
Confidence 99842222222 222223211 146899999999999998644
No 48
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.75 E-value=7.2e-18 Score=156.78 Aligned_cols=103 Identities=18% Similarity=0.280 Sum_probs=72.1
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-cCCCeEEEEEeeccCCCCCch
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~-~~vp~~IvviNK~D~~~~~~~ 239 (514)
..+.|+||||+++|...+...+..+|++|+|+|++.+... ......+..+.. .+.| +++|+||+|.......
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~------~~~~~~~~~i~~~~~~p-iilv~NK~D~~~~~~~ 165 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTL------DRAKTWVNQLKISSNYI-IILVANKIDKNKFQVD 165 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHH------HHHHHHHHHHHHHSCCE-EEEEEECTTCC-CCSC
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHH------HHHHHHHHHHHhhCCCc-EEEEEECCCcccccCC
Confidence 7899999999999988888888999999999999876321 122333333333 4666 9999999994211111
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. +++..+++.. .++++++||++|.|+.++++
T Consensus 166 ---~----~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~~ 196 (208)
T 3clv_A 166 ---I----LEVQKYAQDN------NLLFIQTSAKTGTNIKNIFY 196 (208)
T ss_dssp ---H----HHHHHHHHHT------TCEEEEECTTTCTTHHHHHH
T ss_pred ---H----HHHHHHHHHc------CCcEEEEecCCCCCHHHHHH
Confidence 1 2333344443 35899999999999998654
No 49
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.75 E-value=6.9e-18 Score=156.49 Aligned_cols=154 Identities=21% Similarity=0.194 Sum_probs=105.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
....++|+++|++++|||||+++|+...-. ......++.+.....+..+
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 61 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYT-------------------------------ESYISTIGVDFKIRTIELD 61 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCC-------------------------------SCCCCCSSEEEEEEEEEET
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCC-------------------------------CCCCCcccceEEEEEEEEC
Confidence 346789999999999999999999532111 1112444555555555555
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCC
Q 010278 160 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDH 234 (514)
Q Consensus 160 ~--~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK~D~~ 234 (514)
+ ..+.|+||||+++|...+...+..+|++|+|+|+.+... + ......+..+... ++| +++|+||+|+.
T Consensus 62 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~ 134 (196)
T 3tkl_A 62 GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---F---NNVKQWLQEIDRYASENVN-KLLVGNKCDLT 134 (196)
T ss_dssp TEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCT
T ss_pred CEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECcccc
Confidence 5 679999999999998888888899999999999987532 1 1233333444433 677 89999999984
Q ss_pred CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 235 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... .... .+...+....+ ++++++||++|.|+.++++
T Consensus 135 ~~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~g~gv~~l~~ 171 (196)
T 3tkl_A 135 TKK--VVDY----TTAKEFADSLG------IPFLETSAKNATNVEQSFM 171 (196)
T ss_dssp TTC--CSCH----HHHHHHHHHTT------CCEEEECTTTCTTHHHHHH
T ss_pred ccc--ccCH----HHHHHHHHHcC------CcEEEEeCCCCCCHHHHHH
Confidence 321 1111 11222333333 5799999999999998754
No 50
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.3e-17 Score=154.88 Aligned_cols=154 Identities=17% Similarity=0.188 Sum_probs=105.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+.++|+++|.+++|||||+++|+...- .. ......|.+.......+....
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 71 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHF--DH---------------------------NISPTIGASFMTKTVPCGNEL 71 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCC--CT---------------------------TCCCCSSEEEEEEEEECSSSE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCC--CC---------------------------CcCCCcceeEEEEEEEeCCEE
Confidence 4679999999999999999999954221 00 011124555555555555566
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK~D~~~~~ 237 (514)
..+.|+||||+++|...+...+..+|++|+|+|++.... + ......+..+... ++| +++|+||+|+...
T Consensus 72 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~- 143 (192)
T 2fg5_A 72 HKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDS---F---YTLKKWVKELKEHGPENIV-MAIAGNKCDLSDI- 143 (192)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGG-
T ss_pred EEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhCCCCCc-EEEEEECcccccc-
Confidence 789999999999998888888899999999999987532 1 1223344444443 677 9999999998321
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
..... +++..+++..+ ++++++||++|.|+.+++
T Consensus 144 -~~v~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 177 (192)
T 2fg5_A 144 -REVPL----KDAKEYAESIG------AIVVETSAKNAINIEELF 177 (192)
T ss_dssp -CCSCH----HHHHHHHHTTT------CEEEECBTTTTBSHHHHH
T ss_pred -cccCH----HHHHHHHHHcC------CEEEEEeCCCCcCHHHHH
Confidence 11111 22333344433 589999999999999853
No 51
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.74 E-value=1.3e-17 Score=153.21 Aligned_cols=153 Identities=19% Similarity=0.226 Sum_probs=102.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+.++|+++|++++|||||+++|+..... ......++.+.....+..++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 56 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFK-------------------------------DDSNHTIGVEFGSKIINVGG 56 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCC-------------------------------TTCCCCSEEEEEEEEEEETT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCC-------------------------------CCCCCccceEEEEEEEEECC
Confidence 45789999999999999999999542211 11113344444444455555
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH---HcCCCeEEEEEeeccCCC
Q 010278 161 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK---TLGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 161 --~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~---~~~vp~~IvviNK~D~~~ 235 (514)
..+.|+||||+++|...+...+..+|++|+|+|++.... ++ .....+..+. ..++| +++|+||+|+..
T Consensus 57 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 129 (186)
T 2bme_A 57 KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET---YN---ALTNWLTDARMLASQNIV-IILCGNKKDLDA 129 (186)
T ss_dssp EEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEECccccc
Confidence 689999999999999888888899999999999987532 11 1222332233 24677 999999999832
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. ..... +...+.+.. .++++++||++|.|+.++++
T Consensus 130 ~~--~~~~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 165 (186)
T 2bme_A 130 DR--EVTFL----EASRFAQEN------ELMFLETSALTGENVEEAFV 165 (186)
T ss_dssp GC--CSCHH----HHHHHHHHT------TCEEEECCTTTCTTHHHHHH
T ss_pred cc--ccCHH----HHHHHHHHc------CCEEEEecCCCCCCHHHHHH
Confidence 11 11111 222333333 35899999999999998754
No 52
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.74 E-value=3.8e-18 Score=155.46 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=102.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|++++|||||+++|+..... .. .....|.+.......+...
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~---------------------------~~~t~~~~~~~~~~~~~~~ 62 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFM--AD---------------------------CPHTIGVEFGTRIIEVSGQ 62 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCC--SS---------------------------CTTSCCCCEEEEEEEETTE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCC--CC---------------------------CCCccceEEEEEEEEECCe
Confidence 346799999999999999999999543211 00 0111233333333333333
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~~~ 236 (514)
...+.|+||||+++|...+...+..+|++|+|+|++.+... ......+..+.. .++| +++++||+|+...
T Consensus 63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 135 (179)
T 1z0f_A 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTY------NHLSSWLTDARNLTNPNTV-IILIGNKADLEAQ 135 (179)
T ss_dssp EEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHH------HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHH------HHHHHHHHHHHHhcCCCCc-EEEEEECcccccc
Confidence 46899999999999988888888999999999999876321 122233333333 4667 9999999998321
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
..... +++..+++..+ ++++++||++|.|+.++++
T Consensus 136 --~~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 136 --RDVTY----EEAKQFAEENG------LLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp --CCSCH----HHHHHHHHHTT------CEEEECCTTTCTTHHHHHH
T ss_pred --cccCH----HHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 11111 22333344433 5899999999999998643
No 53
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.74 E-value=6.2e-18 Score=152.70 Aligned_cols=151 Identities=17% Similarity=0.140 Sum_probs=98.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC-
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 160 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~- 160 (514)
..++|+++|++++|||||+++|+...- .. .....++.+.....+..++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 50 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKF--NP-----------------------------SFITTIGIDFKIKTVDINGK 50 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCC--CC------------------------------------CCEEEEEEESSSC
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCC--CC-----------------------------CCCCccceeEEEEEEEECCE
Confidence 358999999999999999999953211 10 0112223333333444443
Q ss_pred -eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCC
Q 010278 161 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 161 -~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK~D~~~~ 236 (514)
..+.|+||||+++|...+...+..+|++|+|+|+..... + ......+..+... ++| +++|+||+|+...
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~ 123 (170)
T 1g16_A 51 KVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERT---F---TNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETR 123 (170)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTC
T ss_pred EEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECccCCcC
Confidence 578999999999998777777889999999999987532 1 1223344444433 677 9999999998322
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
....+ +...+.+..+ ++++++||++|.|+.+++.
T Consensus 124 ~~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gv~~l~~ 157 (170)
T 1g16_A 124 VVTAD-------QGEALAKELG------IPFIESSAKNDDNVNEIFF 157 (170)
T ss_dssp CSCHH-------HHHHHHHHHT------CCEEECBTTTTBSHHHHHH
T ss_pred ccCHH-------HHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 22222 2223334443 4799999999999998644
No 54
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.74 E-value=4.1e-18 Score=155.80 Aligned_cols=155 Identities=19% Similarity=0.204 Sum_probs=100.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|++++|||||+++|+...-. .. .....|.+.......+...
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~ 59 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFV--EF---------------------------QESTIGAAFFSQTLAVNDA 59 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCT--TT---------------------------SCCCSCCSEEEEEEEETTE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCC--Cc---------------------------CCCCceeEEEEEEEEECCE
Confidence 456789999999999999999999532110 00 0011222232222223223
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK~D~~~~ 236 (514)
...+.|+||||+++|...+...+..+|++|+|+|++.... + ....+.+..+... ++| +++|+||+|+...
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQAS---F---ERAKKWVQELQAQGNPNMV-MALAGNKSDLLDA 132 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTT
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECCccccc
Confidence 4689999999999998888888899999999999987531 1 1233444444443 566 8999999998422
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
. +... +++..+++..+ ++++++||++|.|+.+++
T Consensus 133 ~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~ 166 (181)
T 2efe_B 133 R--KVTA----EDAQTYAQENG------LFFMETSAKTATNVKEIF 166 (181)
T ss_dssp C--CSCH----HHHHHHHHHTT------CEEEECCSSSCTTHHHHH
T ss_pred c--cCCH----HHHHHHHHHcC------CEEEEEECCCCCCHHHHH
Confidence 1 1111 22233344333 589999999999999854
No 55
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.74 E-value=2.4e-17 Score=173.22 Aligned_cols=147 Identities=20% Similarity=0.294 Sum_probs=102.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
+.|+++|++|+|||||+|+|......+ .+...|+|.+.....+.+.+..+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~------------------------------v~~~~g~T~d~~~~~~~~~~~~~ 51 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAI------------------------------VEDEEGVTRDPVQDTVEWYGKTF 51 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------------------------------------CCSEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCce------------------------------ecCCCCCccceeeEEEEECCeEE
Confidence 579999999999999999995432211 12237899988888899999999
Q ss_pred EEEeCCCCcc---------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCC
Q 010278 164 TILDAPGHKS---------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 234 (514)
Q Consensus 164 ~liDtPGh~~---------f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~ 234 (514)
.||||||.+. +...+...+..||++|+|+|+..+.. ....+...+++..+.| +++|+||+|+
T Consensus 52 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~-------~~d~~i~~~l~~~~~p-~ilv~NK~D~- 122 (439)
T 1mky_A 52 KLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGIT-------KEDESLADFLRKSTVD-TILVANKAEN- 122 (439)
T ss_dssp EEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCC-------HHHHHHHHHHHHHTCC-EEEEEESCCS-
T ss_pred EEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEeCCCC-
Confidence 9999999764 34445566789999999999998743 3455566667777888 8999999998
Q ss_pred CCCchHHHHHHHHhhh-hhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 235 TVNWSKERYDEIESKM-TPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l-~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.+ .. ..++ ..+ .++|+. +++++||++|.|+.++++
T Consensus 123 -~~---~~----~~~~~~~~-~~lg~~-----~~~~iSA~~g~gv~~L~~ 158 (439)
T 1mky_A 123 -LR---EF----EREVKPEL-YSLGFG-----EPIPVSAEHNINLDTMLE 158 (439)
T ss_dssp -HH---HH----HHHTHHHH-GGGSSC-----SCEECBTTTTBSHHHHHH
T ss_pred -cc---cc----HHHHHHHH-HhcCCC-----CEEEEeccCCCCHHHHHH
Confidence 21 10 1122 222 244542 578999999999998754
No 56
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.74 E-value=9.6e-18 Score=155.53 Aligned_cols=157 Identities=18% Similarity=0.160 Sum_probs=103.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
+..+.++|+++|++|+|||||+++|+....... .....|.+.......+..
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~ 71 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHD-----------------------------SRTTIGVEFSTRTVMLGT 71 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSS-----------------------------CCCCSSEEEEEEEEEETT
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------------CCCccceeEEEEEEEECC
Confidence 345679999999999999999999954321100 001124444333333433
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCC
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 235 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK~D~~~ 235 (514)
....+.|+||||+++|...+...+..+|++|+|+|+..... + ......+..+... ++| +++|+||+|+..
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s---~---~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~ 144 (193)
T 2oil_A 72 AAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT---Y---AVVERWLKELYDHAEATIV-VMLVGNKSDLSQ 144 (193)
T ss_dssp EEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHTTSCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCe-EEEEEECCCccc
Confidence 45789999999999998888888899999999999987532 1 1223344444433 566 899999999842
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. .... .+...+.+.. .++++++||++|.|+.++++
T Consensus 145 ~~--~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 180 (193)
T 2oil_A 145 AR--EVPT----EEARMFAENN------GLLFLETSALDSTNVELAFE 180 (193)
T ss_dssp GC--CSCH----HHHHHHHHHT------TCEEEEECTTTCTTHHHHHH
T ss_pred cc--ccCH----HHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 11 1111 1222333333 35899999999999998654
No 57
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=9.5e-18 Score=153.24 Aligned_cols=155 Identities=15% Similarity=0.177 Sum_probs=94.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
.++.++|+++|++++|||||+++|+...... ......++.+.....+..+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~~ 56 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLA------------------------------GTFISTVGIDFRNKVLDVD 56 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCC------------------------------CCCCCCCSCEEEEEEEEET
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCC------------------------------CCcCCceeeEEEEEEEEEC
Confidence 3567899999999999999999995432110 0011223333333333444
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCC
Q 010278 160 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDH 234 (514)
Q Consensus 160 ~--~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~ 234 (514)
+ ..+.|+||||+++|...+...+..+|++|+|+|++.+.. + ....+.+..+.. .++| +++++||+|+.
T Consensus 57 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 129 (180)
T 2g6b_A 57 GVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKAS---F---DNIQAWLTEIHEYAQHDVA-LMLLGNKVDSA 129 (180)
T ss_dssp TEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECCSTT
T ss_pred CEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCCc-EEEEEECcccC
Confidence 4 478999999999998888888899999999999987532 1 122333344433 4677 99999999994
Q ss_pred CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 235 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... .... ++...+.+..+ ++++++||++|.|+.++++
T Consensus 130 ~~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 166 (180)
T 2g6b_A 130 HER--VVKR----EDGEKLAKEYG------LPFMETSAKTGLNVDLAFT 166 (180)
T ss_dssp SCC--CSCH----HHHHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred ccc--ccCH----HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 321 1011 11222333333 4799999999999998644
No 58
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.74 E-value=1.2e-17 Score=154.90 Aligned_cols=155 Identities=12% Similarity=0.176 Sum_probs=98.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|++|+|||||+++|+..... . ......|.|.......+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~----------------------------~~~~~~~~t~~~~~~~~--- 67 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNL-A----------------------------RTSSKPGKTQTLNFYII--- 67 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC------------------------------------------CCEEEEEE---
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCc-c----------------------------ccCCCCCceeeEEEEEE---
Confidence 346799999999999999999999532100 0 00111344444433322
Q ss_pred CeEEEEEeCCC----------CcchHHHHH---HhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEE
Q 010278 160 TTRFTILDAPG----------HKSYVPNMI---SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 226 (514)
Q Consensus 160 ~~~i~liDtPG----------h~~f~~~~~---~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~Iv 226 (514)
+..+.|+|||| ++.|...+. +....+|++++|+|+..+.. .+..+.+..+...++| +++
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~i~ 139 (195)
T 1svi_A 68 NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPS-------NDDVQMYEFLKYYGIP-VIV 139 (195)
T ss_dssp TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHHHTTCC-EEE
T ss_pred CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEE
Confidence 34799999999 555544333 33344599999999998732 2445556677778888 999
Q ss_pred EEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 227 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 227 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|+||+|+... .......+++...+... ...+++++||++|.|+.++++
T Consensus 140 v~nK~Dl~~~----~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gv~~l~~ 187 (195)
T 1svi_A 140 IATKADKIPK----GKWDKHAKVVRQTLNID-----PEDELILFSSETKKGKDEAWG 187 (195)
T ss_dssp EEECGGGSCG----GGHHHHHHHHHHHHTCC-----TTSEEEECCTTTCTTHHHHHH
T ss_pred EEECcccCCh----HHHHHHHHHHHHHHccc-----CCCceEEEEccCCCCHHHHHH
Confidence 9999999432 12333334444333221 246899999999999998644
No 59
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.74 E-value=1.6e-17 Score=150.32 Aligned_cols=152 Identities=18% Similarity=0.215 Sum_probs=101.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
++.++|+++|++++|||||+++|... .... ...|+......+.+.+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 50 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG--EVVT--------------------------------TIPTIGFNVETVTYKN 50 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS--SCCC--------------------------------CCCCSSEEEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC--CCCC--------------------------------cCCcCccceEEEEECC
Confidence 45689999999999999999999432 1100 1112222334466678
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~ 236 (514)
..+.|+||||+++|...+...+..+|++|+|+|++.... + ....+.+..+.. .++| +++|+||+|+...
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 123 (171)
T 1upt_A 51 LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDR---I---GISKSELVAMLEEEELRKAI-LVVFANKQDMEQA 123 (171)
T ss_dssp EEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTT---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhCCCE-EEEEEECCCCcCC
Confidence 999999999999998877778889999999999987521 1 122233333322 4677 9999999999432
Q ss_pred CchHHHHHHHHhhhhh-hhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTP-FLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~-~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. ..+++...+.. .++. ..++++++||++|.|+.++++
T Consensus 124 ~----~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~gi~~l~~ 161 (171)
T 1upt_A 124 M----TSSEMANSLGLPALKD------RKWQIFKTSATKGTGLDEAME 161 (171)
T ss_dssp C----CHHHHHHHHTGGGCTT------SCEEEEECCTTTCTTHHHHHH
T ss_pred C----CHHHHHHHhCchhccC------CceEEEECcCCCCcCHHHHHH
Confidence 1 11223222221 1111 246899999999999998644
No 60
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.74 E-value=1.2e-18 Score=162.86 Aligned_cols=163 Identities=18% Similarity=0.139 Sum_probs=97.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
..++.++|+++|++++|||||+++|+... .... .....|.+.......+..
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~---------------------------~~~t~~~~~~~~~~~~~~ 74 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNE--FREN---------------------------ISATLGVDFQMKTLIVDG 74 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCC--CC-------------------------------------CEEEEEEETT
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCC--CCcc---------------------------CCCCccceeEEEEEEECC
Confidence 34567999999999999999999995421 1100 001123333333333333
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCC
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~~ 235 (514)
....+.|+||||+++|...+...+..+|++|+|+|++.+.. + ......+..+.. .++| +++|+||+|+..
T Consensus 75 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~ 147 (199)
T 2p5s_A 75 ERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKS---F---LNIREWVDMIEDAAHETVP-IMLVGNKADIRD 147 (199)
T ss_dssp EEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHC---CC-EEEEEECGGGHH
T ss_pred EEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECccccc
Confidence 34679999999999999888888899999999999987532 1 122333333433 3678 999999999831
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
....+....-..+....+.+..+ ++++++||++|.|+.+++.
T Consensus 148 ~~~~~~~~~v~~~~~~~~~~~~~------~~~~~~SA~~g~gv~el~~ 189 (199)
T 2p5s_A 148 TAATEGQKCVPGHFGEKLAMTYG------ALFCETSAKDGSNIVEAVL 189 (199)
T ss_dssp HHHHTTCCCCCHHHHHHHHHHHT------CEEEECCTTTCTTHHHHHH
T ss_pred ccccccccccCHHHHHHHHHHcC------CeEEEeeCCCCCCHHHHHH
Confidence 10000000000112223333333 5899999999999998643
No 61
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.74 E-value=4.8e-18 Score=157.27 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=102.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|++|+|||||+++|+....... ....|+......+..+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------------------------~~~~t~~~~~~~~~~~ 65 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQ--------------------------------NILPTIGFSIEKFKSS 65 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCS--------------------------------SCCCCSSEEEEEEECS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCC--------------------------------CcCCccceeEEEEEEC
Confidence 45679999999999999999999943221000 0112333334456667
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH------cCCCeEEEEEeeccC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDD 233 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~------~~vp~~IvviNK~D~ 233 (514)
+..+.|+||||+++|...+...+..+|++|+|+|++.... + ....+.+..+.. .++| +++|+||+|+
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 138 (190)
T 2h57_A 66 SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLR---M---VVAKEELDTLLNHPDIKHRRIP-ILFFANKMDL 138 (190)
T ss_dssp SCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHH---H---HHHHHHHHHHHHSTTTTTSCCC-EEEEEECTTS
T ss_pred CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHhChhhccCCCe-EEEEEeCcCc
Confidence 8999999999999998888788899999999999987521 1 122333333333 3677 9999999999
Q ss_pred CCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 234 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 234 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.... . .+++.+.+. +..+. ...++++++||++|.|+.++++
T Consensus 139 ~~~~-~---~~~~~~~~~--~~~~~---~~~~~~~~~Sa~~~~gi~~l~~ 179 (190)
T 2h57_A 139 RDAV-T---SVKVSQLLC--LENIK---DKPWHICASDAIKGEGLQEGVD 179 (190)
T ss_dssp TTCC-C---HHHHHHHHT--GGGCC---SSCEEEEECBTTTTBTHHHHHH
T ss_pred ccCC-C---HHHHHHHhC--hhhcc---CCceEEEEccCCCCcCHHHHHH
Confidence 4321 1 222322221 11111 1257899999999999998644
No 62
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.74 E-value=7.6e-18 Score=155.01 Aligned_cols=151 Identities=17% Similarity=0.141 Sum_probs=95.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+.++|+++|++|+|||||+++|+.... .. ...+.+.+.....+..++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~------------------------------~~~~t~~~~~~~~~~~~~ 49 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHF--VD------------------------------EYDPTIEDSYRKQVVIDG 49 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSC--CC------------------------------CCCTTCCEEEEEEEEETT
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCC--CC------------------------------CCCCCchheEEEEEEECC
Confidence 3568999999999999999999953221 10 001122222222333444
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCC
Q 010278 161 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDH 234 (514)
Q Consensus 161 --~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~ 234 (514)
..+.|+||||+++|...+...+..+|++++|+|+..... + ......+..+.. .++| +++|+||+|+.
T Consensus 50 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~ 122 (189)
T 4dsu_A 50 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKS---F---EDIHHYREQIKRVKDSEDVP-MVLVGNKCDLP 122 (189)
T ss_dssp EEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHTTCSCCC-EEEEEECTTSS
T ss_pred cEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCc-EEEEEECccCc
Confidence 457889999999998888788889999999999987521 1 012222222322 3677 99999999995
Q ss_pred CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 235 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
......+..+ .+.+..+ ++++++||++|.|+.++++
T Consensus 123 ~~~~~~~~~~-------~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 158 (189)
T 4dsu_A 123 SRTVDTKQAQ-------DLARSYG------IPFIETSAKTRQGVDDAFY 158 (189)
T ss_dssp SCSSCHHHHH-------HHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred ccccCHHHHH-------HHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 4332322222 2233333 4799999999999999755
No 63
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.74 E-value=1.9e-17 Score=153.83 Aligned_cols=156 Identities=19% Similarity=0.229 Sum_probs=103.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
.....++|+++|++++|||||+++|+...-.. . ....|+......+..
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~------------------------------~--~~~~t~~~~~~~~~~ 60 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSS------------------------------K--HITATVGYNVETFEK 60 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC------------------------------------CCCCCSSEEEEEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcc------------------------------c--ccccccceeEEEEEe
Confidence 45577899999999999999999994321100 0 001122223334567
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-----------CCCeEEEE
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----------GVTKLLLV 227 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~-----------~vp~~Ivv 227 (514)
....+.|+||||+++|...+...+..+|++|+|+|++.+.. | ....+.+..+... ++| +|+|
T Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv 133 (199)
T 4bas_A 61 GRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLR---L---CVVKSEIQAMLKHEDIRRELPGGGRVP-FLFF 133 (199)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTSHHHHSBCTTSCBCC-EEEE
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHH---H---HHHHHHHHHHHhChhhhhcccccCCCC-EEEE
Confidence 88999999999999998888888899999999999997631 1 1233344444333 778 9999
Q ss_pred EeeccCCCCCchHHHHHHHHhhhhh--hhhhccCcccCCeeEEeeccccccccccccc
Q 010278 228 VNKMDDHTVNWSKERYDEIESKMTP--FLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 228 iNK~D~~~~~~~~~~~~~i~~~l~~--~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+||+|+.... . .+++.+.+.. +.+. ..++++++||++|.|+.++++
T Consensus 134 ~NK~Dl~~~~-~---~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~g~gv~~l~~ 181 (199)
T 4bas_A 134 ANKMDAAGAK-T---AAELVEILDLTTLMGD------HPFVIFASNGLKGTGVHEGFS 181 (199)
T ss_dssp EECTTSTTCC-C---HHHHHHHHTHHHHHTT------SCEEEEECBTTTTBTHHHHHH
T ss_pred EECcCCCCCC-C---HHHHHHHhcchhhccC------CeeEEEEeeCCCccCHHHHHH
Confidence 9999994331 1 2223332221 1121 257899999999999999754
No 64
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.74 E-value=9.8e-18 Score=151.21 Aligned_cols=154 Identities=16% Similarity=0.222 Sum_probs=101.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+.++|+++|++++|||||+++|+... ... ......|.+.......+....
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQ--FHE---------------------------FQESTIGAAFLTQTVCLDDTT 54 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSC--CCT---------------------------TCCCCSSEEEEEEEEEETTEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCC--CCC---------------------------CCCCccceEEEEEEEEECCEE
Confidence 457899999999999999999995321 110 011123444444444444446
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK~D~~~~~ 237 (514)
..+.|+||||+++|...+...+..+|++|+|+|++.... + ......+..+... ++| ++++.||+|+....
T Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-iilv~nK~Dl~~~~ 127 (170)
T 1r2q_A 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES---F---ARAKNWVKELQRQASPNIV-IALSGNKADLANKR 127 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGC
T ss_pred EEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECccCcccc
Confidence 789999999999998888888899999999999987521 1 1233333444433 566 88889999983211
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
.... ++...+.+.. .++++++||++|.|+.+++
T Consensus 128 --~~~~----~~~~~~~~~~------~~~~~~~Sa~~g~gi~~l~ 160 (170)
T 1r2q_A 128 --AVDF----QEAQSYADDN------SLLFMETSAKTSMNVNEIF 160 (170)
T ss_dssp --CSCH----HHHHHHHHHT------TCEEEECCTTTCTTHHHHH
T ss_pred --ccCH----HHHHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 1111 1222233333 3589999999999999853
No 65
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.74 E-value=8.3e-18 Score=151.07 Aligned_cols=150 Identities=19% Similarity=0.164 Sum_probs=96.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC-
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 160 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~- 160 (514)
+.++|+++|++|+|||||+++|+... .... ....+.......+...+
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~------------------------------~~~~~~~~~~~~~~~~~~ 49 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGT--FIEK------------------------------YDPTIEDFYRKEIEVDSS 49 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC--CCSC------------------------------CCTTCCEEEEEEEEETTE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCC--Cccc------------------------------CCCCcceeEEEEEEECCE
Confidence 46899999999999999999995321 1100 00011111122233343
Q ss_pred -eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCC
Q 010278 161 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 161 -~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~ 235 (514)
..+.|+||||+++|.......+..+|++++|+|+..... + ......+..+.. .++| +++|+||+|+..
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 122 (167)
T 1kao_A 50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQS---F---QDIKPMRDQIIRVKRYEKVP-VILVGNKVDLES 122 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGG
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEECCcccc
Confidence 558999999999998888888899999999999987421 0 012222222222 3678 999999999832
Q ss_pred CC-chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~-~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. ... .+...+.+..+ ++++++||++|.|+.++++
T Consensus 123 ~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 158 (167)
T 1kao_A 123 EREVSS-------SEGRALAEEWG------CPFMETSAKSKTMVDELFA 158 (167)
T ss_dssp GCCSCH-------HHHHHHHHHHT------SCEEEECTTCHHHHHHHHH
T ss_pred cccCCH-------HHHHHHHHHhC------CCEEEecCCCCcCHHHHHH
Confidence 11 111 12223333333 4799999999999998644
No 66
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=9.8e-18 Score=157.71 Aligned_cols=152 Identities=16% Similarity=0.140 Sum_probs=101.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
...++|+++|++++|||||+++|+...- . ......++.+.....+...+
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~ 66 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKF--N-----------------------------PSFITTIGIDFKIKTVDING 66 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCC--C-----------------------------CSSSCCCSCCEEEEEEEETT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC--C-----------------------------cccCCcccceEEEEEEEECC
Confidence 4568999999999999999999953211 0 01112333333344455555
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCC
Q 010278 161 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 235 (514)
Q Consensus 161 --~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK~D~~~ 235 (514)
..+.|+||||+++|...+...+..+|++|+|+|+..... + ....+.+..+... ++| +++|+||+|+..
T Consensus 67 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 139 (213)
T 3cph_A 67 KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERT---F---TNIKQWFKTVNEHANDEAQ-LLLVGNKSDMET 139 (213)
T ss_dssp EEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHTTTCSE-EEEEEECTTCSS
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECCCCcc
Confidence 679999999999998777777889999999999987532 1 1223344444433 567 999999999832
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.....+. ...+.+..+ ++++++||++|.|+.++++
T Consensus 140 ~~~~~~~-------~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 174 (213)
T 3cph_A 140 RVVTADQ-------GEALAKELG------IPFIESSAKNDDNVNEIFF 174 (213)
T ss_dssp CCSCHHH-------HHHHHHHHT------CCEEECBTTTTBSSHHHHH
T ss_pred cccCHHH-------HHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 2222222 222333333 4799999999999998755
No 67
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.74 E-value=1.2e-17 Score=154.55 Aligned_cols=156 Identities=17% Similarity=0.133 Sum_probs=104.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
....++|+++|++|+|||||+++|+...-. .. .....|.+.......+...
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~---------------------------~~~t~~~~~~~~~~~~~~~ 69 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFT--PA---------------------------FVSTVGIDFKVKTVYRHDK 69 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCC--CS---------------------------CCCCCCCEEEEEEEEETTE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCC--CC---------------------------cCCceeEEEEEEEEEECCe
Confidence 345689999999999999999999542210 00 0111344444444444334
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK~D~~~~ 236 (514)
...+.|+||||+++|...+...+..+|++|+|+|++.... + ....+.+..+... ++| +++|+||+|+...
T Consensus 70 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~ 142 (189)
T 2gf9_A 70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQES---F---AAVQDWATQIKTYSWDNAQ-VILVGNKCDLEDE 142 (189)
T ss_dssp EEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECcccccc
Confidence 5689999999999998877788899999999999987532 1 1334444455543 667 9999999998421
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. ... .+++..+.+.++ ++++++||++|.|+.++++
T Consensus 143 ~--~~~----~~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 177 (189)
T 2gf9_A 143 R--VVP----AEDGRRLADDLG------FEFFEASAKENINVKQVFE 177 (189)
T ss_dssp C--CSC----HHHHHHHHHHHT------CEEEECBTTTTBSHHHHHH
T ss_pred c--CCC----HHHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 1 100 122333344443 4799999999999998654
No 68
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.74 E-value=6.8e-18 Score=156.15 Aligned_cols=154 Identities=16% Similarity=0.115 Sum_probs=102.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
.++.++|+++|++|+|||||+++|+...- .. ....|+......+...
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~-------------------------------~~~~t~~~~~~~~~~~ 65 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQF--NE-------------------------------DMIPTVGFNMRKITKG 65 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCC--CC-------------------------------SCCCCCSEEEEEEEET
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCC--CC-------------------------------ccCCCCceeEEEEEeC
Confidence 45679999999999999999999953211 10 0111222233346678
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~ 235 (514)
+..+.|+||||+++|...+...+..+|++|+|+|++.... + ....+.+..+.. .++| +++|+||+|+..
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~ 138 (188)
T 1zd9_A 66 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEK---I---EASKNELHNLLDKPQLQGIP-VLVLGNKRDLPG 138 (188)
T ss_dssp TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCcccCCCC-EEEEEECCCCcc
Confidence 8999999999999998888888899999999999986421 1 122333333322 4678 999999999943
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
.. . .+++.+.+.... +. ...++++++||++|.|+.+++
T Consensus 139 ~~-~---~~~~~~~~~~~~----~~-~~~~~~~~~SA~~g~gv~~l~ 176 (188)
T 1zd9_A 139 AL-D---EKELIEKMNLSA----IQ-DREICCYSISCKEKDNIDITL 176 (188)
T ss_dssp CC-C---HHHHHHHTTGGG----CC-SSCEEEEECCTTTCTTHHHHH
T ss_pred CC-C---HHHHHHHhChhh----hc-cCCeeEEEEECCCCCCHHHHH
Confidence 21 1 122333222111 11 125789999999999999854
No 69
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.73 E-value=6.8e-18 Score=154.07 Aligned_cols=154 Identities=17% Similarity=0.149 Sum_probs=103.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|++|+|||||+++|+.... ......+++.+.....+...
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 54 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTF-------------------------------SGSYITTIGVDFKIRTVEIN 54 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC----------------------------------CCTTTBSEEEEEEEEEET
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CCccCCCceeEEEEEEEEEC
Confidence 34678999999999999999999942110 01122445555555556666
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCC
Q 010278 160 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHT 235 (514)
Q Consensus 160 ~--~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~vp~~IvviNK~D~~~ 235 (514)
+ ..+.|+||||+++|...+...+..+|++|+|+|++.+.. + ......+..+... ++| +|+|+||+|+..
T Consensus 55 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 55 GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAES---F---VNVKRWLHEINQNCDDVC-RILVGNKNDDPE 127 (181)
T ss_dssp TEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHCTTSE-EEEEEECTTCGG
T ss_pred CEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCC-EEEEEECCCCch
Confidence 6 689999999999998877778899999999999987532 1 1222233333332 466 899999999843
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. .... .+...+....+ ++++++||++|.|+.++++
T Consensus 128 ~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 163 (181)
T 3tw8_B 128 RK--VVET----EDAYKFAGQMG------IQLFETSAKENVNVEEMFN 163 (181)
T ss_dssp GC--CSCH----HHHHHHHHHHT------CCEEECBTTTTBSHHHHHH
T ss_pred hc--ccCH----HHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 21 1011 12222333333 5799999999999998654
No 70
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.73 E-value=7.8e-18 Score=156.40 Aligned_cols=155 Identities=20% Similarity=0.159 Sum_probs=100.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
....++|+++|++|+|||||+++|+..... ......++.+.....+..+
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~ 71 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFC-------------------------------EACKSTVGVDFKIKTVELR 71 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC---------------------------------------CCTTEEEEEEEEEET
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCC-------------------------------cCCCCccceeEEEEEEEEC
Confidence 456789999999999999999999432110 0111222333333344444
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCC
Q 010278 160 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDH 234 (514)
Q Consensus 160 ~--~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK~D~~ 234 (514)
+ ..+.|+||||+++|...+...+..+|++|+|+|++.+.. + ......+..+... ++| +++|+||+|+.
T Consensus 72 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilV~NK~Dl~ 144 (192)
T 2il1_A 72 GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET---F---DDLPKWMKMIDKYASEDAE-LLLVGNKLDCE 144 (192)
T ss_dssp TEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECGGGG
T ss_pred CeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECcccc
Confidence 4 578999999999999888888899999999999987532 1 1223333444443 677 99999999983
Q ss_pred CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 235 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. .+...+ +...+.+.+. ..+++++||++|.|+.++++
T Consensus 145 ~~--~~v~~~----~~~~~~~~~~-----~~~~~~~SA~~g~gi~~l~~ 182 (192)
T 2il1_A 145 TD--REITRQ----QGEKFAQQIT-----GMRFCEASAKDNFNVDEIFL 182 (192)
T ss_dssp GG--CCSCHH----HHHHHHHTST-----TCEEEECBTTTTBSHHHHHH
T ss_pred cc--cccCHH----HHHHHHHhcC-----CCeEEEEeCCCCCCHHHHHH
Confidence 21 111111 1222333221 36899999999999998644
No 71
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.73 E-value=7.8e-18 Score=154.51 Aligned_cols=152 Identities=16% Similarity=0.148 Sum_probs=78.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
...++|+++|++|+|||||+++|..... . ......++.+.....+..++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~~~~~~ 54 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAF--N-----------------------------STFISTIGIDFKIRTIELDG 54 (183)
T ss_dssp SEEEEEEEECCCCC-----------------------------------------------CHHHHHCEEEEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC--C-----------------------------CCCCCcccceeEEEEEEECC
Confidence 4578999999999999999999953211 0 01112333444444455555
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCC
Q 010278 161 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 235 (514)
Q Consensus 161 --~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK~D~~~ 235 (514)
..+.|+||||+++|...+...+..+|++|+|+|++.... + ....+.+..+... ++| +++|+||+|+..
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 127 (183)
T 2fu5_C 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKS---F---DNIRNWIRNIEEHASADVE-KMILGNKCDVND 127 (183)
T ss_dssp EEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEEC--CCS
T ss_pred EEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECccCCc
Confidence 789999999999998777777889999999999987521 1 1233344444443 577 899999999943
Q ss_pred CC-chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~-~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. .+. +++..+.+..+ ++++++||++|.|+.+++.
T Consensus 128 ~~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~ 163 (183)
T 2fu5_C 128 KRQVSK-------ERGEKLALDYG------IKFMETSAKANINVENAFF 163 (183)
T ss_dssp CCCSCH-------HHHHHHHHHHT------CEEEECCC---CCHHHHHH
T ss_pred cCcCCH-------HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 21 111 12223344443 5899999999999998754
No 72
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.73 E-value=5.9e-18 Score=153.27 Aligned_cols=148 Identities=24% Similarity=0.285 Sum_probs=95.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
+..+|+++|++|+|||||+++|...... .....|+|++.....+.+.+.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~ 50 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVY-------------------------------IGNWPGVTVEKKEGEFEYNGE 50 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSS-------------------------------CC-----CCCCCEEEEEETTE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCee-------------------------------ccCCCCcceeeeEEEEEECCc
Confidence 3578999999999999999999432110 111245555555555667788
Q ss_pred EEEEEeCCCCcchHH-----HH-HHhh--hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 162 RFTILDAPGHKSYVP-----NM-ISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 162 ~i~liDtPGh~~f~~-----~~-~~g~--~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
.+.++||||+++|.. .+ ...+ ..+|++++|+|+... .+....+..+...++| +|+|.||+|+
T Consensus 51 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~---------~~~~~~~~~~~~~~~p-~ilv~nK~Dl 120 (165)
T 2wji_A 51 KFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---------ERNLYLTLQLMEMGAN-LLLALNKMDL 120 (165)
T ss_dssp EEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH---------HHHHHHHHHHHHTTCC-EEEEEECHHH
T ss_pred EEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch---------hHhHHHHHHHHhcCCC-EEEEEEchHh
Confidence 999999999988731 11 1112 379999999999752 1333445555667888 9999999998
Q ss_pred CCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 234 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 234 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.... .+..+...+.+.++ ++++++||++|.|+.++++
T Consensus 121 ~~~~-------~~~~~~~~~~~~~~------~~~~~~SA~~~~~v~~l~~ 157 (165)
T 2wji_A 121 AKSL-------GIEIDVDKLEKILG------VKVVPLSAAKKMGIEELKK 157 (165)
T ss_dssp HHHT-------TCCCCHHHHHHHHT------SCEEECBGGGTBSHHHHHH
T ss_pred cccc-------ChhhHHHHHHHHhC------CCEEEEEcCCCCCHHHHHH
Confidence 3110 00011222233333 4799999999999998643
No 73
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.73 E-value=1.4e-17 Score=151.66 Aligned_cols=153 Identities=20% Similarity=0.242 Sum_probs=100.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|++++|||||+++|+..... ......++.+.....+..+
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 59 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFD-------------------------------NTYQATIGIDFLSKTMYLE 59 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCC-------------------------------SSCCCCCSEEEEEEEEEET
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCC-------------------------------CCCCCceeeEEEEEEEEEC
Confidence 346689999999999999999999532211 1111333334444444455
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCC
Q 010278 160 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDH 234 (514)
Q Consensus 160 ~--~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~ 234 (514)
+ ..+.|+||||+++|...+...+..+|++|+|+|++.... + ......+..+.. .++| +++|+||+|+.
T Consensus 60 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 132 (179)
T 2y8e_A 60 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNS---F---HQTSKWIDDVRTERGSDVI-IMLVGNKTDLS 132 (179)
T ss_dssp TEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHHTTSSE-EEEEEECGGGG
T ss_pred CeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECCccc
Confidence 4 579999999999998888778889999999999986421 1 122333333332 3677 89999999984
Q ss_pred CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 235 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
... +...+ +...+++.. .++++++||++|.|+.+++
T Consensus 133 ~~~--~~~~~----~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~ 168 (179)
T 2y8e_A 133 DKR--QVSTE----EGERKAKEL------NVMFIETSAKAGYNVKQLF 168 (179)
T ss_dssp GGC--CSCHH----HHHHHHHHH------TCEEEEEBTTTTBSHHHHH
T ss_pred ccC--cCCHH----HHHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 211 11111 122233333 2589999999999999853
No 74
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.73 E-value=3.7e-17 Score=150.83 Aligned_cols=153 Identities=12% Similarity=0.102 Sum_probs=100.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEee-eEEEEe
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG-RAHFET 158 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~-~~~~~~ 158 (514)
..+.++|+++|++|+|||||+++|+... ... .....+..+.. ...+..
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~-----------------------------~~~~t~~~~~~~~~~~~~ 56 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGK--FNS-----------------------------KFITTVGIDFREKRVVYR 56 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSC--CCC-----------------------------SCCCCCSEEEEEEEEEEC
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCC--CCc-----------------------------CcccccceeeeeEEEEEe
Confidence 3467899999999999999999995321 100 00011111211 122333
Q ss_pred C-----------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCe
Q 010278 159 E-----------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTK 223 (514)
Q Consensus 159 ~-----------~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~ 223 (514)
. ...+.|+||||+++|.......+..+|++|+|+|+..+... ......+..+.. .++|
T Consensus 57 ~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~~p- 129 (195)
T 3bc1_A 57 ANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSF------LNVRNWISQLQMHAYSENPD- 129 (195)
T ss_dssp TTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHH------HTHHHHHHHHHHHSSSSSCC-
T ss_pred cCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHH------HHHHHHHHHHHHhcCCCCCC-
Confidence 3 45899999999999999888889999999999999875321 122334444433 4677
Q ss_pred EEEEEeeccCCCCC-chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 224 LLLVVNKMDDHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 224 ~IvviNK~D~~~~~-~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+++|+||+|+.... ... +++..+.+..+ ++++++||++|.|+.++++
T Consensus 130 iilv~nK~Dl~~~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~ 177 (195)
T 3bc1_A 130 IVLCGNKSDLEDQRAVKE-------EEARELAEKYG------IPYFETSAANGTNISHAIE 177 (195)
T ss_dssp EEEEEECTTCGGGCCSCH-------HHHHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcccccccccCH-------HHHHHHHHHcC------CCEEEEECCCCCCHHHHHH
Confidence 99999999984211 111 22233334443 4799999999999998654
No 75
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=1.2e-17 Score=154.59 Aligned_cols=155 Identities=17% Similarity=0.170 Sum_probs=102.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|++++|||||+++|+...- .. ......|.+.......+...
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~--~~---------------------------~~~~t~~~~~~~~~~~~~~~ 62 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTF--DP---------------------------ELAATIGVDFKVKTISVDGN 62 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCC--CT---------------------------TCCCCCSEEEEEEEEEETTE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCC--Cc---------------------------cCCCccceEEEEEEEEECCe
Confidence 34678999999999999999999954221 00 00111344444444444444
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~ 235 (514)
...+.|+||||+++|...+...+..+|++|+|+|+..... + ......+..+.. .++| +++|+||+|+..
T Consensus 63 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 63 KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDT---F---VKLDNWLNELETYCTRNDIV-NMLVGNKIDKEN 135 (195)
T ss_dssp EEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHTTCCSCSCCE-EEEEEECTTSSS
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCcCCCc-EEEEEECCcCcc
Confidence 5789999999999998878788899999999999987532 1 122333333333 2466 899999999843
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
...... +...+++.. .++++++||++|.|+.++++
T Consensus 136 ~~~~~~-------~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 170 (195)
T 1x3s_A 136 REVDRN-------EGLKFARKH------SMLFIEASAKTCDGVQCAFE 170 (195)
T ss_dssp CCSCHH-------HHHHHHHHT------TCEEEECCTTTCTTHHHHHH
T ss_pred cccCHH-------HHHHHHHHc------CCEEEEecCCCCCCHHHHHH
Confidence 222211 222333333 35799999999999998654
No 76
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.73 E-value=1.4e-17 Score=150.14 Aligned_cols=156 Identities=19% Similarity=0.237 Sum_probs=99.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
+.++|+++|++|+|||||+++|+...- ... .....|.+.......+.....
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 52 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDF--AEN---------------------------KEPTIGAAFLTQRVTINEHTV 52 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC--CTT---------------------------CCCCSSEEEEEEEEEETTEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCC---------------------------CCCccceeEEEEEEEECCEEE
Confidence 468999999999999999999954221 100 011133333333333333345
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCCCc
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~~~~~ 238 (514)
.+.|+||||+++|...+...+..+|++|+|+|++.... + ......+..+.. .++| +++++||+|+...+.
T Consensus 53 ~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~ 125 (170)
T 1ek0_A 53 KFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQS---F---IKARHWVKELHEQASKDII-IALVGNKIDXLQEGG 125 (170)
T ss_dssp EEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGSSC
T ss_pred EEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECCCcccccc
Confidence 89999999999998888888899999999999987522 0 122223333332 2677 899999999843211
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
..... .++...+.+..+ ++++++||++|.|+.+++
T Consensus 126 ~~~v~---~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1ek0_A 126 ERKVA---REEGEKLAEEKG------LLFFETSAKTGENVNDVF 160 (170)
T ss_dssp CCCSC---HHHHHHHHHHHT------CEEEECCTTTCTTHHHHH
T ss_pred ccCCC---HHHHHHHHHHcC------CEEEEEeCCCCCCHHHHH
Confidence 00000 111222233333 589999999999999853
No 77
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=1.6e-17 Score=153.29 Aligned_cols=153 Identities=19% Similarity=0.228 Sum_probs=98.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
++.++|+++|++|+|||||+++|+.. .... ...|+......+..++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 59 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN--EVVH--------------------------------TSPTIGSNVEEIVINN 59 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT--SCEE--------------------------------EECCSCSSCEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC--CCCc--------------------------------CcCCCccceEEEEECC
Confidence 56799999999999999999999431 1000 0112222234455678
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~ 236 (514)
..+.|+||||+++|...+...+..+|++|+|+|++.+.. + ....+.+..+.. .++| +++|+||+|+...
T Consensus 60 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 132 (187)
T 1zj6_A 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER---I---SVTREELYKMLAHEDLRKAG-LLIFANKQDVKEC 132 (187)
T ss_dssp EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTT---H---HHHHHHHHHHHTSGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhchhhCCCe-EEEEEECCCCcCC
Confidence 999999999999988777777889999999999987631 1 123333333333 4677 9999999999432
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. . .+++.+.+. ...+. ...++++++||++|.|+.++++
T Consensus 133 ~-~---~~~i~~~~~----~~~~~-~~~~~~~~~Sa~~g~gi~~l~~ 170 (187)
T 1zj6_A 133 M-T---VAEISQFLK----LTSIK-DHQWHIQACCALTGEGLCQGLE 170 (187)
T ss_dssp C-C---HHHHHHHHT----GGGCC-SSCEEEEECBTTTTBTHHHHHH
T ss_pred C-C---HHHHHHHhC----hhhhc-CCCcEEEEccCCCCcCHHHHHH
Confidence 1 1 222322222 11111 1246899999999999998643
No 78
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.73 E-value=4.3e-17 Score=146.03 Aligned_cols=150 Identities=17% Similarity=0.155 Sum_probs=96.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC--
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 159 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~-- 159 (514)
+..+|+++|++|+|||||+++|+.... ... ....+.......+...
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~------------------------------~~~~~~~~~~~~~~~~~~ 49 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHF--VDE------------------------------CDPTIEDSYRKQVVIDGE 49 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSC--CSC------------------------------CCTTCCEEEEEEEEETTE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcC--ccc------------------------------cCCccceEEEEEEEECCE
Confidence 357899999999999999999954211 100 0001111111223333
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc----CCCeEEEEEeeccCCC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDHT 235 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~----~vp~~IvviNK~D~~~ 235 (514)
...+.|+||||+.+|...+...+..+|++++|+|+..... + ....+.+..+... ++| +++++||+|+..
T Consensus 50 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~---~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 50 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKS---F---EDIHQYREQIKRVKDSDDVP-MVLVGNKSDLAA 122 (166)
T ss_dssp EEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSC
T ss_pred EEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCc-EEEEEEchhhhh
Confidence 3568999999999998888888889999999999986421 0 1223333333332 678 999999999843
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
...... ++..+.+..+ ++++++||++|.|+.++++
T Consensus 123 ~~~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 123 RTVESR-------QAQDLARSYG------IPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp CCSCHH-------HHHHHHHHHT------CCEEEECTTTCTTHHHHHH
T ss_pred cccCHH-------HHHHHHHHcC------CeEEEecCCCCCCHHHHHH
Confidence 222222 2223333333 4799999999999998643
No 79
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.72 E-value=1.3e-17 Score=150.66 Aligned_cols=155 Identities=18% Similarity=0.205 Sum_probs=102.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+.++|+++|++++|||||+++|+...- .. ......|.+.......+....
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSF--DP---------------------------NINPTIGASFMTKTVQYQNEL 54 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCC--CT---------------------------TCCCCCSEEEEEEEEEETTEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCC--CC---------------------------CCCCceeEEEEEEEEEECCeE
Confidence 4568999999999999999999954221 00 011124455544444444445
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK~D~~~~~ 237 (514)
..+.|+||||+++|...+...+..+|++|+|+|++.... + ......+..+... ++| +++|.||+|+....
T Consensus 55 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~ 127 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEET---F---STLKNWVRELRQHGPPSIV-VAIAGNKCDLTDVR 127 (170)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTSE-EEEEEECTTCGGGC
T ss_pred EEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCCc-EEEEEECCcccccc
Confidence 789999999999998888788899999999999987532 0 1223344444443 455 88899999994211
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+.. .++...+.+.. .++++++||++|.|+.++++
T Consensus 128 --~v~----~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~~ 161 (170)
T 1z0j_A 128 --EVM----ERDAKDYADSI------HAIFVETSAKNAININELFI 161 (170)
T ss_dssp --CSC----HHHHHHHHHHT------TCEEEECBTTTTBSHHHHHH
T ss_pred --ccC----HHHHHHHHHHc------CCEEEEEeCCCCcCHHHHHH
Confidence 100 11222233333 35899999999999998643
No 80
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.72 E-value=2.9e-18 Score=178.19 Aligned_cols=150 Identities=20% Similarity=0.195 Sum_probs=107.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
....++|+++|++|+|||||+++|+..... ..+...|+|++.....+++.
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~------------------------------~~~~~~gtT~d~~~~~~~~~ 80 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVS------------------------------IVSDYAGTTTDPVYKSMELH 80 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------------------------------------CCCCEEEEEET
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCC------------------------------ccCCCCCeeeeeEEEEEEEC
Confidence 345689999999999999999998543211 12344788888888888887
Q ss_pred Ce-EEEEEeCCCCcch-------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeec
Q 010278 160 TT-RFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 231 (514)
Q Consensus 160 ~~-~i~liDtPGh~~f-------~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~ 231 (514)
+. .++|||||||.+| ...+...+..+|++|+|+|+ +. ..++.+.+..+...++| +|+|+||+
T Consensus 81 ~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~-------~~~~~~~l~~l~~~~~p-iIvV~NK~ 150 (423)
T 3qq5_A 81 PIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--AP-------TPYEDDVVNLFKEMEIP-FVVVVNKI 150 (423)
T ss_dssp TTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SC-------CHHHHHHHHHHHHTTCC-EEEECCCC
T ss_pred CCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CC-------hHHHHHHHHHHHhcCCC-EEEEEeCc
Confidence 65 9999999999876 34456667889999999999 42 25889999999999999 99999999
Q ss_pred cCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 232 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 232 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|+...... +..+++ .+.+ +++++++||++|.|+.++++
T Consensus 151 Dl~~~~~~-----~~~~~l---~~~~------g~~v~~vSAktg~gI~eL~~ 188 (423)
T 3qq5_A 151 DVLGEKAE-----ELKGLY---ESRY------EAKVLLVSALQKKGFDDIGK 188 (423)
T ss_dssp TTTTCCCT-----HHHHHS---SCCT------TCCCCCCSSCCTTSTTTHHH
T ss_pred CCCCccHH-----HHHHHH---HHHc------CCCEEEEECCCCCCHHHHHH
Confidence 99543321 222222 2222 35899999999999998644
No 81
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.72 E-value=4.3e-17 Score=152.33 Aligned_cols=153 Identities=19% Similarity=0.139 Sum_probs=102.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
..++|+++|++++|||||+++|+...- ... .....|.+.......+.....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~---------------------------~~~t~~~~~~~~~~~~~~~~~ 57 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSF--TPA---------------------------FVSTVGIDFKVKTIYRNDKRI 57 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCC--CSC---------------------------CCCCCSEEEEEEEEEETTEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC--CCC---------------------------cCCccceeEEEEEEEECCeEE
Confidence 568999999999999999999953211 000 011134444443333333456
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCCC-
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN- 237 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~~~~- 237 (514)
.+.|+||||+++|...+...+..+|++|+|+|+..+.. + ......+..+.. .++| +++|+||+|+....
T Consensus 58 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~ 130 (203)
T 1zbd_A 58 KLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEES---F---NAVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDERV 130 (203)
T ss_dssp EEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCSSCE-EEEEEECTTCTTSCC
T ss_pred EEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECcccCcccc
Confidence 89999999999999888888899999999999987521 1 122333344443 3567 99999999994321
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... .++..+.+.++ ++++++||++|.|+.++++
T Consensus 131 ~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 131 VSS-------ERGRQLADHLG------FEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp SCH-------HHHHHHHHHHT------CEEEECBTTTTBSSHHHHH
T ss_pred cCH-------HHHHHHHHHCC------CeEEEEECCCCCCHHHHHH
Confidence 111 12223333443 4799999999999998755
No 82
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.72 E-value=1.7e-17 Score=174.36 Aligned_cols=158 Identities=22% Similarity=0.265 Sum_probs=106.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
...++|+++|++|+|||||+++|+.....+ .....|.|.+.....+.+++
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~------------------------------v~~~~gtT~d~~~~~i~~~g 227 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERAL------------------------------VSPIPGTTRDPVDDEVFIDG 227 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEE------------------------------ECCCC------CCEEEEETT
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccc------------------------------cCCCCCCcCCceEEEEEECC
Confidence 356899999999999999999995432211 12236788887777888899
Q ss_pred eEEEEEeCCCCcchHHH------------HHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEE
Q 010278 161 TRFTILDAPGHKSYVPN------------MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVV 228 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~------------~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~Ivvi 228 (514)
..+.++||||.+++... ....+..+|++++|+|+..+.. .+..+.+.++...++| +|+|+
T Consensus 228 ~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~-------~~~~~i~~~l~~~~~~-~ilv~ 299 (439)
T 1mky_A 228 RKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGIT-------RQDQRMAGLMERRGRA-SVVVF 299 (439)
T ss_dssp EEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCC-------HHHHHHHHHHHHTTCE-EEEEE
T ss_pred EEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEE
Confidence 99999999998654322 2345678999999999998743 3555666677778988 99999
Q ss_pred eeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 229 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 229 NK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
||+|+... .....+++.+.+...+...+ ..+++++||++|.|+.++++
T Consensus 300 NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~SA~~g~gv~~l~~ 347 (439)
T 1mky_A 300 NKWDLVVH--REKRYDEFTKLFREKLYFID-----YSPLIFTSADKGWNIDRMID 347 (439)
T ss_dssp ECGGGSTT--GGGCHHHHHHHHHHHCGGGT-----TSCEEECBTTTTBSHHHHHH
T ss_pred ECccCCCc--hhhHHHHHHHHHHHHhccCC-----CCcEEEEECCCCCCHHHHHH
Confidence 99998422 22223444444444444333 35899999999999998765
No 83
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.72 E-value=4.2e-17 Score=146.57 Aligned_cols=150 Identities=18% Similarity=0.177 Sum_probs=98.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
++|+++|++|+|||||+++|+...- . + ...|+......+...+..+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~--~-------------------------~-------~~~t~~~~~~~~~~~~~~~ 46 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEI--V-------------------------T-------TIPTIGFNVETVEYKNISF 46 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCS--S-------------------------C-------CCCCSSCCEEEEECSSCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCc--C-------------------------c-------ccCcCceeEEEEEECCEEE
Confidence 4799999999999999999954221 0 0 0112222333456678999
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCCCch
Q 010278 164 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 164 ~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~~~~ 239 (514)
.|+||||+++|...+...+..+|++|+|+|++.... + ....+.+..+.. .++| +++|+||+|+....
T Consensus 47 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-- 117 (164)
T 1r8s_A 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---V---NEAREELMRMLAEDELRDAV-LLVFANKQDLPNAM-- 117 (164)
T ss_dssp EEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCC--
T ss_pred EEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhcCCe-EEEEEECcCCcCCC--
Confidence 999999999998888888899999999999987521 1 122233333322 2677 99999999994321
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
..+++.+.+... ... ...++++++||++|.|+.++++
T Consensus 118 --~~~~~~~~~~~~----~~~-~~~~~~~~~Sa~~~~gi~~l~~ 154 (164)
T 1r8s_A 118 --NAAEITDKLGLH----SLR-HRNWYIQATCATSGDGLYEGLD 154 (164)
T ss_dssp --CHHHHHHHTTGG----GCS-SCCEEEEECBTTTTBTHHHHHH
T ss_pred --CHHHHHHHhCcc----ccc-CccEEEEEcccCCCcCHHHHHH
Confidence 122333322211 111 1246899999999999998643
No 84
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.72 E-value=6.3e-17 Score=151.52 Aligned_cols=155 Identities=14% Similarity=0.125 Sum_probs=100.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
....++|+++|++|+|||||+++|+... ... .....++.+.....+..+
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~--~~~-----------------------------~~~~t~~~~~~~~~~~~~ 74 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGA--FSE-----------------------------RQGSTIGVDFTMKTLEIQ 74 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSC--C---------------------------------------CEEEEEEEET
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCC--CCC-----------------------------CCCCCcceEEEEEEEEEC
Confidence 4567899999999999999999994321 110 000112222223344455
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCC
Q 010278 160 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDH 234 (514)
Q Consensus 160 ~--~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~ 234 (514)
+ ..+.|+||||+++|...+...++.+|++|+|+|++.... + ......+..+.. .++| +|+|+||+|+.
T Consensus 75 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~ 147 (201)
T 2hup_A 75 GKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSS---F---LSVPHWIEDVRKYAGSNIV-QLLIGNKSDLS 147 (201)
T ss_dssp TEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCG
T ss_pred CEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECCccc
Confidence 4 589999999999999888888899999999999987521 1 123334444443 3567 89999999994
Q ss_pred CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 235 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... .... +++..+++..++ .+++++||++|.|+.++++
T Consensus 148 ~~~--~v~~----~~~~~~~~~~~~-----~~~~~~SA~~g~gi~~l~~ 185 (201)
T 2hup_A 148 ELR--EVSL----AEAQSLAEHYDI-----LCAIETSAKDSSNVEEAFL 185 (201)
T ss_dssp GGC--CSCH----HHHHHHHHHTTC-----SEEEECBTTTTBSHHHHHH
T ss_pred ccc--ccCH----HHHHHHHHHcCC-----CEEEEEeCCCCCCHHHHHH
Confidence 211 1111 223334444443 1899999999999998654
No 85
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.72 E-value=1.1e-17 Score=175.61 Aligned_cols=147 Identities=22% Similarity=0.295 Sum_probs=99.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeE
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 162 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~ 162 (514)
.++|+++|++|+|||||+|+|....-.+ .....|+|.+.....+.+.+..
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~------------------------------v~~~~g~T~d~~~~~~~~~~~~ 52 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISI------------------------------VEDTPGVTRDRIYSSAEWLNYD 52 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------------------------------------CEEEECTTCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCCccceEEEEEEECCce
Confidence 3689999999999999999995322111 1223788988888888888999
Q ss_pred EEEEeCCCCc--------chHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCC
Q 010278 163 FTILDAPGHK--------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 234 (514)
Q Consensus 163 i~liDtPGh~--------~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~ 234 (514)
+.|+||||+. .|...+...+..||++|+|+|+..|.. ....+...+++..+.| +++|+||+|+.
T Consensus 53 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~-------~~d~~~~~~l~~~~~p-vilv~NK~D~~ 124 (436)
T 2hjg_A 53 FNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVT-------AADEEVAKILYRTKKP-VVLAVNKLDNT 124 (436)
T ss_dssp CEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHHHHHTTCCSC-EEEEEECCCC-
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECccCc
Confidence 9999999986 566666777889999999999998853 4566666777778888 99999999983
Q ss_pred CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 235 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... ..+..+. ++|+. +++++||++|.|+.++++
T Consensus 125 ~~~----------~~~~~~~-~lg~~-----~~~~iSA~~g~gv~~L~~ 157 (436)
T 2hjg_A 125 EMR----------ANIYDFY-SLGFG-----EPYPISGTHGLGLGDLLD 157 (436)
T ss_dssp --------------CCCSSG-GGSSC-----CCEECBTTTTBTHHHHHH
T ss_pred cch----------hhHHHHH-HcCCC-----CeEEEeCcCCCChHHHHH
Confidence 210 1222222 34442 679999999999998643
No 86
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.72 E-value=1.7e-17 Score=152.76 Aligned_cols=153 Identities=19% Similarity=0.204 Sum_probs=101.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
++.++|+++|++|+|||||+++|+... ... ...|+......+..++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~--------------------------------~~~t~~~~~~~~~~~~ 61 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VDT--------------------------------ISPTLGFNIKTLEHRG 61 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CSS--------------------------------CCCCSSEEEEEEEETT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CCc--------------------------------ccccCccceEEEEECC
Confidence 467999999999999999999995321 000 0112222233455678
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~ 236 (514)
..+.|+||||+++|...+...+..+|++|+|+|++.... + ....+.+..+.. .++| +++|+||+|+...
T Consensus 62 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 134 (186)
T 1ksh_A 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQR---M---QDCQRELQSLLVEERLAGAT-LLIFANKQDLPGA 134 (186)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHhChhcCCCc-EEEEEeCccCCCC
Confidence 999999999999998887777889999999999987531 1 122233333332 3677 9999999999432
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. ..+++.+.+.. .... ...++++++||++|.|+.++++
T Consensus 135 ~----~~~~~~~~~~~----~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 172 (186)
T 1ksh_A 135 L----SCNAIQEALEL----DSIR-SHHWRIQGCSAVTGEDLLPGID 172 (186)
T ss_dssp C----CHHHHHHHTTG----GGCC-SSCEEEEECCTTTCTTHHHHHH
T ss_pred C----CHHHHHHHhCh----hhcc-CCceEEEEeeCCCCCCHHHHHH
Confidence 1 12233332221 0011 1257899999999999998644
No 87
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=3.4e-17 Score=153.60 Aligned_cols=154 Identities=18% Similarity=0.114 Sum_probs=101.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|++|+|||||+++|+... .. ......++.+.....+..+
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~ 71 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGL--FP-----------------------------PGQGATIGVDFMIKTVEIN 71 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSS--CC-----------------------------TTCCCCCSEEEEEEEEEET
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCC--CC-----------------------------CCCCCccceeEEEEEEEEC
Confidence 4567999999999999999999995321 11 0111223333333445555
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCC
Q 010278 160 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDH 234 (514)
Q Consensus 160 ~--~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~ 234 (514)
+ ..+.|+||||+++|...+...++.+|++|+|+|++.... ++ ...+.+..+.. .++| +++|+||+|+.
T Consensus 72 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~ 144 (201)
T 2ew1_A 72 GEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEES---FR---CLPEWLREIEQYASNKVI-TVLVGNKIDLA 144 (201)
T ss_dssp TEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSCTTCE-EEEEEECGGGG
T ss_pred CEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCC-EEEEEECCCCc
Confidence 4 578999999999999888888899999999999987532 11 22333343433 3566 89999999983
Q ss_pred CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 235 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. .+... ++...+.+..+ ++++++||++|.|+.++++
T Consensus 145 ~~--~~v~~----~~~~~~~~~~~------~~~~~~Sa~~g~gv~~l~~ 181 (201)
T 2ew1_A 145 ER--REVSQ----QRAEEFSEAQD------MYYLETSAKESDNVEKLFL 181 (201)
T ss_dssp GG--CSSCH----HHHHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred cc--cccCH----HHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 21 11011 11222333332 5799999999999998754
No 88
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.72 E-value=1.6e-17 Score=155.53 Aligned_cols=154 Identities=14% Similarity=0.147 Sum_probs=99.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|++|+|||||+++|+..... ......++.+.....+..+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~ 53 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFS-------------------------------NQYKATIGADFLTKEVMVD 53 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCC-------------------------------SSCCCCCSEEEEEEEEESS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCC-------------------------------CCCCCcccceEEEEEEEEC
Confidence 346789999999999999999999543211 0011223333333334443
Q ss_pred --CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-------cCCCeEEEEEee
Q 010278 160 --TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-------LGVTKLLLVVNK 230 (514)
Q Consensus 160 --~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~-------~~vp~~IvviNK 230 (514)
...+.|+||||+++|...+...+..+|++|+|+|+..+.. + ......+..+.. .++| +++|+||
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK 126 (207)
T 1vg8_A 54 DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNT---F---KTLDSWRDEFLIQASPRDPENFP-FVVLGNK 126 (207)
T ss_dssp SCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHHCCSSGGGSC-EEEEEEC
T ss_pred CEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHH---H---HHHHHHHHHHHHhcccccCCCCc-EEEEEEC
Confidence 3689999999999998777777889999999999987532 1 112222222221 3677 8999999
Q ss_pred ccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 231 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 231 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+|+.......+ ++..+.+.. ..++++++||++|.|+.++++
T Consensus 127 ~Dl~~~~~~~~-------~~~~~~~~~-----~~~~~~~~Sa~~g~gi~~l~~ 167 (207)
T 1vg8_A 127 IDLENRQVATK-------RAQAWCYSK-----NNIPYFETSAKEAINVEQAFQ 167 (207)
T ss_dssp TTSSCCCSCHH-------HHHHHHHHT-----TSCCEEECBTTTTBSHHHHHH
T ss_pred CCCcccccCHH-------HHHHHHHhc-----CCceEEEEeCCCCCCHHHHHH
Confidence 99942221211 122222211 146899999999999998755
No 89
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.72 E-value=3e-17 Score=147.58 Aligned_cols=151 Identities=19% Similarity=0.150 Sum_probs=94.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC-
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 160 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~- 160 (514)
+.++|+++|++|+|||||+++|+... .... .....+.+. ...+..++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~---------------------------~~~t~~~~~---~~~~~~~~~ 50 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDE--FVED---------------------------YEPTKADSY---RKKVVLDGE 50 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCSC---------------------------CCTTCCEEE---EEEEEETTE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc--cCCC---------------------------CCCCcceEE---EEEEEECCE
Confidence 56899999999999999999995422 1100 000011111 12233333
Q ss_pred -eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCC
Q 010278 161 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 161 -~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~ 235 (514)
..+.|+||||+++|...+...+..+|++|+|+|+..... + ......+..+.. .++| +++++||+|+..
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 123 (168)
T 1u8z_A 51 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---F---AATADFREQILRVKEDENVP-FLLVGNKSDLED 123 (168)
T ss_dssp EEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHCCTTSC-EEEEEECGGGGG
T ss_pred EEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCc-EEEEEECccccc
Confidence 579999999999998888888899999999999986421 1 112222222222 2677 999999999842
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. .+... +++..+++..+ ++++++||++|.|+.++++
T Consensus 124 ~--~~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 159 (168)
T 1u8z_A 124 K--RQVSV----EEAKNRADQWN------VNYVETSAKTRANVDKVFF 159 (168)
T ss_dssp G--CCSCH----HHHHHHHHHHT------CEEEECCTTTCTTHHHHHH
T ss_pred c--CccCH----HHHHHHHHHcC------CeEEEeCCCCCCCHHHHHH
Confidence 1 11111 22233334433 5799999999999998644
No 90
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.72 E-value=2.1e-17 Score=153.11 Aligned_cols=160 Identities=16% Similarity=0.112 Sum_probs=100.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeE-----
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA----- 154 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~----- 154 (514)
..+.++|+++|++|+|||||++.|.... .... .............|+.....
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~---~~~~--------------------~~~~~~~~~~~~~t~~~~~~~~~~~ 67 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKV---PEGR--------------------KGEMVSLATEDERTLFFDFLPLDIG 67 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTS---CGGG--------------------BCCCEEEECSSCEEEEEEECCSSCC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhc---cccc--------------------cccccccccccccceeeeecccccc
Confidence 4567899999999999999997662211 1000 00000000001122222211
Q ss_pred EEEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH----HH-----cCCCeEE
Q 010278 155 HFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KT-----LGVTKLL 225 (514)
Q Consensus 155 ~~~~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~----~~-----~~vp~~I 225 (514)
.+......+.|+||||+++|.......++.+|++|+|+|++.+.. .+..+.+..+ .. .++| ++
T Consensus 68 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~-------~~~~~s~~~l~~~l~~~~~~~~~~p-ii 139 (198)
T 3t1o_A 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRL-------RANAESMRNMRENLAEYGLTLDDVP-IV 139 (198)
T ss_dssp CSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGH-------HHHHHHHHHHHHHHHHTTCCTTSSC-EE
T ss_pred cccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchh-------hHhHHHHHHHHHHHHhhccccCCCC-EE
Confidence 122234679999999999999888888999999999999986533 1233333322 22 3677 99
Q ss_pred EEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 226 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 226 vviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+|+||+|+... ... +++..+++..++ .+++++||++|.|+.++++
T Consensus 140 lv~NK~Dl~~~-~~~-------~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~~ 184 (198)
T 3t1o_A 140 IQVNKRDLPDA-LPV-------EMVRAVVDPEGK-----FPVLEAVATEGKGVFETLK 184 (198)
T ss_dssp EEEECTTSTTC-CCH-------HHHHHHHCTTCC-----SCEEECBGGGTBTHHHHHH
T ss_pred EEEEchhcccc-cCH-------HHHHHHHHhcCC-----ceEEEEecCCCcCHHHHHH
Confidence 99999999432 111 233344444432 2899999999999998654
No 91
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=149.29 Aligned_cols=154 Identities=17% Similarity=0.126 Sum_probs=90.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
++.++|+++|++|+|||||+++|....... .....|.+.......+....
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 51 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERD------------------------------LHEQLGEDVYERTLTVDGED 51 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----------------------------------CCCSSSSEEEEEEEETTEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcc------------------------------ccCccccceeEEEEEECCEE
Confidence 356899999999999999999994321100 01113444433333332233
Q ss_pred eEEEEEeCCCCcch--HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc----CCCeEEEEEeeccCC
Q 010278 161 TRFTILDAPGHKSY--VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDH 234 (514)
Q Consensus 161 ~~i~liDtPGh~~f--~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~----~vp~~IvviNK~D~~ 234 (514)
..+.|+||||+..+ .......++.+|++|+|+|++.... ++ ...+.+..+... ++| +++|+||+|+.
T Consensus 52 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~ 124 (175)
T 2nzj_A 52 TTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGS---FE---SASELRIQLRRTHQADHVP-IILVGNKADLA 124 (175)
T ss_dssp EEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHH---HH---HHHHHHHHHHHCC----CC-EEEEEECTTCT
T ss_pred EEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhccCCCC-EEEEEEChhhc
Confidence 57899999999884 3333344578999999999986421 11 223333334443 678 99999999994
Q ss_pred CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 235 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... +...+ +...+....+ ++++++||++|.|+.++++
T Consensus 125 ~~~--~v~~~----~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 161 (175)
T 2nzj_A 125 RCR--EVSVE----EGRACAVVFD------CKFIETSATLQHNVAELFE 161 (175)
T ss_dssp TTC--CSCHH----HHHHHHHHHT------SEEEECBTTTTBSHHHHHH
T ss_pred ccc--ccCHH----HHHHHHHHcC------CeEEEEecCCCCCHHHHHH
Confidence 321 11111 1222233332 5899999999999998654
No 92
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.72 E-value=2e-17 Score=149.51 Aligned_cols=153 Identities=14% Similarity=0.124 Sum_probs=92.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC-
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 159 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~- 159 (514)
.+.++|+++|++|+|||||+++|+...- .. .....++.+.....+..+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~--~~-----------------------------~~~~t~~~~~~~~~~~~~~ 52 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKF--ND-----------------------------KHITTLGASFLTKKLNIGG 52 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCC--CS-----------------------------SCCCCCSCEEEEEEEESSS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCC--Cc-----------------------------CCCCccceEEEEEEEEECC
Confidence 4568999999999999999999953211 00 001122222222233333
Q ss_pred -CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCC
Q 010278 160 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 160 -~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~~ 235 (514)
...+.|+||||+++|.......+..+|++|+|+|+.+... + ......+..+.. .++| +++++||+|+..
T Consensus 53 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 125 (170)
T 1z08_A 53 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDS---F---QKVKNWVKELRKMLGNEIC-LCIVGNKIDLEK 125 (170)
T ss_dssp CEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHGGGSE-EEEEEECGGGGG
T ss_pred EEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCe-EEEEEECccccc
Confidence 3578899999999998877777889999999999987531 1 122223333332 4677 899999999842
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. .... ++...+.+..+ ++++++||++|.|+.++++
T Consensus 126 ~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1z08_A 126 ER--HVSI----QEAESYAESVG------AKHYHTSAKQNKGIEELFL 161 (170)
T ss_dssp GC--CSCH----HHHHHHHHHTT------CEEEEEBTTTTBSHHHHHH
T ss_pred cc--ccCH----HHHHHHHHHcC------CeEEEecCCCCCCHHHHHH
Confidence 11 1111 12233344433 5799999999999998644
No 93
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.72 E-value=2.9e-17 Score=147.82 Aligned_cols=154 Identities=16% Similarity=0.111 Sum_probs=96.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
+.++|+++|++|+|||||+++|+.. ..... .....+... .....+.....
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~--~~~~~---------------------------~~~t~~~~~-~~~~~~~~~~~ 51 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQG--IFVEK---------------------------YDPTIEDSY-RKQVEVDCQQC 51 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC--CCCCS---------------------------CCCCSEEEE-EEEEESSSCEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC--CCCCC---------------------------CCCCccceE-EEEEEECCEEE
Confidence 4689999999999999999999542 11100 000011111 11122223356
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCCC
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~~ 237 (514)
.+.|+||||+++|...+...+..+|++++|+|++.... ++ .....+..+.. .++| +++++||+|+....
T Consensus 52 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~ 124 (167)
T 1c1y_A 52 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQST---FN---DLQDLREQILRVKDTEDVP-MILVGNKCDLEDER 124 (167)
T ss_dssp EEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHCCSCCC-EEEEEECTTCGGGC
T ss_pred EEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCcCCCc-EEEEEECccccccc
Confidence 79999999999998888888889999999999986421 11 22223322322 3678 99999999984211
Q ss_pred chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.... +++..+.+.++ ..+++++||++|.|+.++++
T Consensus 125 --~~~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l~~ 159 (167)
T 1c1y_A 125 --VVGK----EQGQNLARQWC-----NCAFLESSAKSKINVNEIFY 159 (167)
T ss_dssp --CSCH----HHHHHHHHHTT-----SCEEEECBTTTTBSHHHHHH
T ss_pred --cCCH----HHHHHHHHHcc-----CCcEEEecCCCCCCHHHHHH
Confidence 1111 12222333331 36899999999999998643
No 94
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.72 E-value=5e-17 Score=153.31 Aligned_cols=156 Identities=21% Similarity=0.240 Sum_probs=93.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
.++.++|+++|++|+|||||+++|+... .. +....++. ....+.++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~--~~------------------------------~~~~~~~~--~~~~~~~~ 49 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQ--YR------------------------------DTQTSITD--SSAIYKVN 49 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSC--CC------------------------------CBCCCCSC--EEEEEECS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC--cc------------------------------cccCCcce--eeEEEEec
Confidence 3467899999999999999999995422 11 00111222 22234454
Q ss_pred ---CeEEEEEeCCCCcchHH-HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH---------HcCCCeEEE
Q 010278 160 ---TTRFTILDAPGHKSYVP-NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK---------TLGVTKLLL 226 (514)
Q Consensus 160 ---~~~i~liDtPGh~~f~~-~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~---------~~~vp~~Iv 226 (514)
...+.|+||||+++|.. .+...+..+|++|+|+|+... + .+..+....+. ..++| +++
T Consensus 50 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~p-iil 120 (214)
T 2fh5_B 50 NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAF--Q------REVKDVAEFLYQVLIDSMALKNSPS-LLI 120 (214)
T ss_dssp STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTH--H------HHHHHHHHHHHHHHHHHHTSTTCCE-EEE
T ss_pred CCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCc--C------HHHHHHHHHHHHHHhhhhhcccCCC-EEE
Confidence 57899999999999987 444457899999999999762 1 12222222211 12567 999
Q ss_pred EEeeccCCCCCchHHHHHHHHhhhhhhhhh---------------------cc-----Ccc---cCCeeEEeeccccc--
Q 010278 227 VVNKMDDHTVNWSKERYDEIESKMTPFLKA---------------------SG-----YNV---KKDVQFLPISGLMG-- 275 (514)
Q Consensus 227 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~---------------------~g-----~~~---~~~~~iipiSa~~G-- 275 (514)
|+||+|+...... +.+.+.+...+.. .+ |.. ...++++++||++|
T Consensus 121 v~nK~Dl~~~~~~----~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~ 196 (214)
T 2fh5_B 121 ACNKQDIAMAKSA----KLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRG 196 (214)
T ss_dssp EEECTTSTTCCCH----HHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC----
T ss_pred EEECCCCCCcccH----HHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCc
Confidence 9999999543322 2333333333221 00 000 01678999999999
Q ss_pred ----ccccccc
Q 010278 276 ----LNMKTRV 282 (514)
Q Consensus 276 ----~gi~~l~ 282 (514)
.|+.+++
T Consensus 197 ~~~~~gv~~lf 207 (214)
T 2fh5_B 197 DTGSADIQDLE 207 (214)
T ss_dssp ---CCBCHHHH
T ss_pred cccccChHHHH
Confidence 9998854
No 95
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.71 E-value=3.5e-17 Score=147.45 Aligned_cols=153 Identities=18% Similarity=0.129 Sum_probs=97.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC-
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 159 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~- 159 (514)
.+.++|+++|++|+|||||+++|+... ... .....++.+.....+..+
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 51 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGI--FTK-----------------------------DYKKTIGVDFLERQIQVND 51 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCC--CCC-----------------------------CSSCCCSSSEEEEEEEETT
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCC--CCC-----------------------------CCCCceEEEEEEEEEEECC
Confidence 356899999999999999999995321 110 000111112222233333
Q ss_pred -CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--cCCCeEEEEEeeccCCCC
Q 010278 160 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 160 -~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~--~~vp~~IvviNK~D~~~~ 236 (514)
...+.|+||||+++|...+...+..+|++|+|+|++.... + ......+..+.. .++| +++|+||+|+...
T Consensus 52 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~ 124 (168)
T 1z2a_A 52 EDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRES---F---EAISSWREKVVAEVGDIP-TALVQNKIDLLDD 124 (168)
T ss_dssp EEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHHCSCC-EEEEEECGGGGGG
T ss_pred EEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCC-EEEEEECcccCcc
Confidence 4589999999999987777777889999999999987531 1 122333333332 3778 9999999998421
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. +... +++..+.+..+ ++++++||++|.|+.++++
T Consensus 125 ~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~ 159 (168)
T 1z2a_A 125 S--CIKN----EEAEGLAKRLK------LRFYRTSVKEDLNVSEVFK 159 (168)
T ss_dssp C--SSCH----HHHHHHHHHHT------CEEEECBTTTTBSSHHHHH
T ss_pred c--ccCH----HHHHHHHHHcC------CeEEEEecCCCCCHHHHHH
Confidence 1 1011 12233344443 5899999999999998643
No 96
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=1.4e-17 Score=154.42 Aligned_cols=156 Identities=16% Similarity=0.112 Sum_probs=106.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
....++|+++|++|+|||||+++|+...-... .....|.+.......+...
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~ 70 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPA-----------------------------FVSTVGIDFKVKTVYRHEK 70 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCC-----------------------------EEEEETTTEEEEEEEETTT
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcc-----------------------------cCCCeeeEEEEEEEEECCE
Confidence 34678999999999999999999964321100 0011244444444455556
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~~~ 236 (514)
...+.|+||||++.|.......+..+|++|+|+|++.... + ....+.+..+.. .++| +|+|+||+|+...
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~ 143 (191)
T 3dz8_A 71 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES---F---NAVQDWATQIKTYSWDNAQ-VILVGNKCDMEEE 143 (191)
T ss_dssp TEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECCCCccc
Confidence 7889999999999999888888999999999999986422 1 133344444444 3677 8999999998322
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. .... .+...+.+..+ ++++++||++|.|+.++++
T Consensus 144 ~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 178 (191)
T 3dz8_A 144 R--VVPT----EKGQLLAEQLG------FDFFEASAKENISVRQAFE 178 (191)
T ss_dssp C--CSCH----HHHHHHHHHHT------CEEEECBTTTTBSHHHHHH
T ss_pred c--ccCH----HHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 1 1111 12223333333 5899999999999998654
No 97
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.71 E-value=1.3e-17 Score=162.82 Aligned_cols=159 Identities=16% Similarity=0.187 Sum_probs=102.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|++|+|||||+++|++....... ....++|.......+.+.
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~ 69 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESK-----------------------------LGSQTLTKTCSKSQGSWG 69 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCC-----------------------------TTSCCCCCSCEEEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccC-----------------------------CCCCceeeeeEEEEEEeC
Confidence 446789999999999999999999654322110 011235666666667888
Q ss_pred CeEEEEEeCCCCcch-----------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-----CCCe
Q 010278 160 TTRFTILDAPGHKSY-----------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----GVTK 223 (514)
Q Consensus 160 ~~~i~liDtPGh~~f-----------~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~-----~vp~ 223 (514)
++.++||||||+.++ .+.+...+..+|++|+|+|+.. + ..+....+..+... +.|
T Consensus 70 ~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--~------~~~~~~~~~~l~~~~~~~~~~~- 140 (260)
T 2xtp_A 70 NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR--Y------TSQDQQAAQRVKEIFGEDAMGH- 140 (260)
T ss_dssp TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC--C------CHHHHHHHHHHHHHHCGGGGGG-
T ss_pred CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC--C------CHHHHHHHHHHHHHhCchhhcc-
Confidence 999999999998765 2223335678999999999985 2 14556666666655 567
Q ss_pred EEEEEe-eccCCCCCchHHHHHHHH----hhhhhhhhhccCcccCCeeE--Eeeccccccccccccc
Q 010278 224 LLLVVN-KMDDHTVNWSKERYDEIE----SKMTPFLKASGYNVKKDVQF--LPISGLMGLNMKTRVD 283 (514)
Q Consensus 224 ~IvviN-K~D~~~~~~~~~~~~~i~----~~l~~~l~~~g~~~~~~~~i--ipiSa~~G~gi~~l~~ 283 (514)
.|+++| |+|+...+. .. .+. .++..+++.++.. ..++ +++||++|.|+.++++
T Consensus 141 ~i~vv~nK~Dl~~~~~--~~--~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~SA~~~~gv~~l~~ 200 (260)
T 2xtp_A 141 TIVLFTHKEDLNGGSL--MD--YMHDSDNKALSKLVAACGGR---ICAFNNRAEGSNQDDQVKELMD 200 (260)
T ss_dssp EEEEEECGGGGTTCCH--HH--HHHHCCCHHHHHHHHHTTTC---EEECCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEEcccccCCccH--HH--HHHhcchHHHHHHHHHhCCe---EEEecCcccccccHHHHHHHHH
Confidence 666777 999953221 11 111 1223344444321 0012 8999999999998654
No 98
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.71 E-value=2.6e-17 Score=151.03 Aligned_cols=156 Identities=17% Similarity=0.182 Sum_probs=97.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC-
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 159 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~- 159 (514)
++.++|+++|++|+|||||+++|+.. ...... ....+... ...+...
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~--~~~~~~---------------------------~~t~~~~~---~~~~~~~~ 50 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTN--AFPGEY---------------------------IPTVFDNY---SANVMVDG 50 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS--SCCSSC---------------------------CCCSCCEE---EEEEEETT
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcC--CCCCCc---------------------------CCccccee---EEEEEECC
Confidence 45689999999999999999999532 111000 00011111 1122333
Q ss_pred -CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHHc--CCCeEEEEEeeccCCC
Q 010278 160 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHT 235 (514)
Q Consensus 160 -~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~-e~l~~~~~~--~vp~~IvviNK~D~~~ 235 (514)
...+.|+||||+++|.......+..+|++|+|+|++.+.. + .... ..+..+... ++| +++|+||+|+..
T Consensus 51 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 123 (186)
T 1mh1_A 51 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPAS---F---ENVRAKWYPEVRHHCPNTP-IILVGTKLDLRD 123 (186)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHSTTSC-EEEEEECHHHHT
T ss_pred EEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhh---H---HHHHHHHHHHHHHhCCCCC-EEEEeEcccccc
Confidence 3567799999999998777777889999999999987531 0 0111 233344443 778 999999999843
Q ss_pred CCchHHHHHHHH---------hhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDEIE---------SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~i~---------~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. ...+.+. .+...+.+..++ .+++++||++|.|+.++++
T Consensus 124 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~ 172 (186)
T 1mh1_A 124 DK---DTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTVFD 172 (186)
T ss_dssp CH---HHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHHH
T ss_pred cc---hhhhhhcccccccCCHHHHHHHHHhcCC-----cEEEEecCCCccCHHHHHH
Confidence 21 1111111 122223333332 3899999999999998643
No 99
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.71 E-value=3.1e-17 Score=154.04 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=98.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|++|+|||||+++|+.. .+.. ...+.+.+.....+..+
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~--~~~~------------------------------~~~~t~~~~~~~~~~~~ 74 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTN--AFPG------------------------------EYIPTVFDNYSANVMVD 74 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHS--CCCC-------------------------------CCCCSEEEEEEEEECC
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhC--CCCC------------------------------CcCCeecceeEEEEEEC
Confidence 456799999999999999999999532 1110 01122222222233333
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHHc--CCCeEEEEEeeccCC
Q 010278 160 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDH 234 (514)
Q Consensus 160 ~--~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~-e~l~~~~~~--~vp~~IvviNK~D~~ 234 (514)
+ ..+.|+||||+++|.......+..+|++|+|+|++.... + .... ..+..+... ++| +|+|+||+|+.
T Consensus 75 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 147 (204)
T 4gzl_A 75 GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPAS---F---ENVRAKWYPEVRHHCPNTP-IILVGTKLDLR 147 (204)
T ss_dssp -CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHCSSCC-EEEEEECHHHH
T ss_pred CEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEechhhc
Confidence 3 556699999999998888778899999999999987532 0 0111 233344444 788 99999999984
Q ss_pred CCCchHHHHHHH---------HhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 235 TVNWSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 235 ~~~~~~~~~~~i---------~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... ...+.+ ..+...+.+..++ .+++++||++|.|+.++++
T Consensus 148 ~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~~l~~ 197 (204)
T 4gzl_A 148 DDK---DTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTVFD 197 (204)
T ss_dssp TCH---HHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHHH
T ss_pred cch---hhhhhhhccccccccHHHHHHHHHhcCC-----cEEEEeeCCCCCCHHHHHH
Confidence 321 111111 1222334444443 4799999999999998643
No 100
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.71 E-value=4.2e-17 Score=149.75 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=99.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
...+.++|+++|++|+|||||+++|+...- .. ...|+......+..
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~--------------------------------~~~t~~~~~~~~~~ 62 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV--VH--------------------------------TSPTIGSNVEEIVI 62 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC--EE--------------------------------EECCSSSSCEEEEE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC--Cc--------------------------------cCCcCceeeEEEEE
Confidence 345679999999999999999999953210 00 00111122234556
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCC
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDH 234 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~ 234 (514)
++..+.|+||||+++|...+...+..+|++|+|+|++.... + ....+.+..+.. .++| +++|+||+|+.
T Consensus 63 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~ 135 (181)
T 2h17_A 63 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER---I---SVTREELYKMLAHEDLRKAG-LLIFANKQDVK 135 (181)
T ss_dssp TTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTT---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhChhhCCCe-EEEEEECCCcc
Confidence 78999999999999998877777899999999999987521 1 123333333332 4677 99999999994
Q ss_pred CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 235 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
... . .+++.+.+. ...+. ...++++++||++|.|+.+++
T Consensus 136 ~~~-~---~~~i~~~~~----~~~~~-~~~~~~~~~Sa~~g~gi~~l~ 174 (181)
T 2h17_A 136 ECM-T---VAEISQFLK----LTSIK-DHQWHIQACCALTGEGLCQGL 174 (181)
T ss_dssp TCC-C---HHHHHHHTT----GGGCC-SSCEEEEECBTTTTBTHHHHH
T ss_pred cCC-C---HHHHHHHhC----ccccc-CCceEEEEccCCCCcCHHHHH
Confidence 321 1 122222221 11111 124689999999999998853
No 101
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.71 E-value=5.3e-17 Score=151.24 Aligned_cols=166 Identities=14% Similarity=0.138 Sum_probs=98.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEE-
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE- 157 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~- 157 (514)
..++.++|+++|..++|||||+++|.. .... ....+.+.......+.
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~---~~~~-----------------------------~~~~~~~~~~~~~~~~~ 63 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFH---KMSP-----------------------------NETLFLESTNKIYKDDI 63 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHS---CCCG-----------------------------GGGGGCCCCCSCEEEEE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHh---cCCC-----------------------------cceeeeccccceeeeec
Confidence 456779999999999999999997732 1111 0112222222223322
Q ss_pred --eCCeEEEEEeCCCCcchHHHH---HHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH--HcCCCeEEEEEee
Q 010278 158 --TETTRFTILDAPGHKSYVPNM---ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK--TLGVTKLLLVVNK 230 (514)
Q Consensus 158 --~~~~~i~liDtPGh~~f~~~~---~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~--~~~vp~~IvviNK 230 (514)
.....+.|+||||+++|...+ ...++.+|++|+|+|++...++ .+. ...+.+..+. ..++| +++|.||
T Consensus 64 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-~~~---~~~~~l~~~~~~~~~~p-iilv~nK 138 (196)
T 3llu_A 64 SNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYME-ALT---RLHITVSKAYKVNPDMN-FEVFIHK 138 (196)
T ss_dssp CCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHH-HHH---HHHHHHHHHHHHCTTCE-EEEEEEC
T ss_pred cCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHH-HHH---HHHHHHHHHHhcCCCCc-EEEEEec
Confidence 345789999999999997766 5667889999999999986221 010 1222222221 12677 9999999
Q ss_pred ccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 231 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 231 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+|+...+........+..+....+...... ...++++++||++ .|+.+++.
T Consensus 139 ~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~e~Sa~~-~~v~~~f~ 189 (196)
T 3llu_A 139 VDGLSDDHKIETQRDIHQRANDDLADAGLE-KLHLSFYLTSIYD-HSIFEAFS 189 (196)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHTTCT-TSCEEEEEECTTS-THHHHHHH
T ss_pred cccCchhhhhHHHhHHHHHHHHHHHHhhhh-cCCcceEEEEech-hhHHHHHH
Confidence 998432111122233333333333332211 1247899999999 99998643
No 102
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.71 E-value=3.7e-17 Score=151.45 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=100.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|++++|||||+++|+..... .. .....|.+.... .+..+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~---------------------------~~~t~~~~~~~~--~~~~~ 66 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--PV---------------------------HDLTIGVEFGAR--MVNID 66 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCC--C--------------------------------CCSSEEEE--EEEET
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCC--CC---------------------------CCCcccceeEEE--EEEEC
Confidence 456799999999999999999999542211 00 001123333222 33334
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCC
Q 010278 160 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDH 234 (514)
Q Consensus 160 ~--~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK~D~~ 234 (514)
+ ..+.|+||||+++|...+...++.+|++|+|+|++.... + ......+..+... ++| +++|+||+|+.
T Consensus 67 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~ 139 (191)
T 2a5j_A 67 GKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLTSWLEDARQHSSSNMV-IMLIGNKSDLE 139 (191)
T ss_dssp TEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCG
T ss_pred CEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECcccC
Confidence 3 589999999999998777777889999999999987532 1 1233344444443 677 89999999984
Q ss_pred CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 235 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... .... ++...+.+..+ ++++++||++|.|+.++++
T Consensus 140 ~~~--~v~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 176 (191)
T 2a5j_A 140 SRR--DVKR----EEGEAFAREHG------LIFMETSAKTACNVEEAFI 176 (191)
T ss_dssp GGC--CSCH----HHHHHHHHHHT------CEEEEECTTTCTTHHHHHH
T ss_pred Ccc--ccCH----HHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 211 1011 12223333433 5899999999999998654
No 103
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.71 E-value=6.2e-17 Score=148.46 Aligned_cols=153 Identities=18% Similarity=0.132 Sum_probs=98.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|++++|||||+++|+... ... .....+.......+...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~------------------------------~~~~t~~~~~~~~~~~~ 62 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDE--FVE------------------------------DYEPTKADSYRKKVVLD 62 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSC--CCC------------------------------SCCTTCCEEEEEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCC--CCC------------------------------cCCCccceEEEEEEEEC
Confidence 4567999999999999999999995422 110 00111111111223334
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccC
Q 010278 160 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 233 (514)
Q Consensus 160 ~--~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~ 233 (514)
+ ..+.|+||||+++|...+...+..+|++|+|+|+..... + ......+..+.. .++| +++|+||+|+
T Consensus 63 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 135 (187)
T 2a9k_A 63 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---F---AATADFREQILRVKEDENVP-FLLVGNKSDL 135 (187)
T ss_dssp TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHCCTTCC-EEEEEECGGG
T ss_pred CEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 4 578999999999999888888899999999999986421 1 012222222222 2678 9999999998
Q ss_pred CCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 234 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 234 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... .+... .++..+++..+ ++++++||++|.|+.++++
T Consensus 136 ~~~--~~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 173 (187)
T 2a9k_A 136 EDK--RQVSV----EEAKNRAEQWN------VNYVETSAKTRANVDKVFF 173 (187)
T ss_dssp GGG--CCSCH----HHHHHHHHHTT------CEEEECCTTTCTTHHHHHH
T ss_pred ccc--CccCH----HHHHHHHHHcC------CeEEEeCCCCCCCHHHHHH
Confidence 421 11111 22333344433 5899999999999998654
No 104
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.71 E-value=8.4e-17 Score=148.62 Aligned_cols=152 Identities=18% Similarity=0.148 Sum_probs=89.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|++|+|||||+++|+... ... ...+.+.......+...
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~------------------------------~~~~t~~~~~~~~~~~~ 65 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNH--FVD------------------------------EYDPTIEDSYRKQVVID 65 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSS--CCS------------------------------CCCTTCCEEEEEEEEET
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCC--Ccc------------------------------ccCCccceEEEEEEEEC
Confidence 4567899999999999999999995421 110 00111111111233334
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccC
Q 010278 160 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 233 (514)
Q Consensus 160 ~--~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~ 233 (514)
+ ..+.|+||||+++|...+...+..+|++|+|+|+..... + ......+..+.. .++| +++|+||+|+
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl 138 (190)
T 3con_A 66 GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKS---F---ADINLYREQIKRVKDSDDVP-MVLVGNKCDL 138 (190)
T ss_dssp TEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHTCSCCC-EEEEEECTTC
T ss_pred CEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHHhCCCCCe-EEEEEECCcC
Confidence 3 568999999999998888888899999999999987531 1 122222333332 2678 9999999998
Q ss_pred CCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 234 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 234 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
....... +++..+.+..+ ++++++||++|.|+.++++
T Consensus 139 ~~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 175 (190)
T 3con_A 139 PTRTVDT-------KQAHELAKSYG------IPFIETSAKTRQGVEDAFY 175 (190)
T ss_dssp SCCCSCH-------HHHHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred CcccCCH-------HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 4322122 22233344443 4799999999999998654
No 105
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=156.38 Aligned_cols=154 Identities=19% Similarity=0.211 Sum_probs=97.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|++++|||||+++|+..... ......++.+.....+..+
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~ 70 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFK-------------------------------QDSNHTIGVEFGSRVVNVG 70 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC-------------------------------------------CCEEEEEEEET
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCC-------------------------------ccCCCcccceeEEEEEEEC
Confidence 356799999999999999999999532110 0001222222223334444
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCC
Q 010278 160 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDH 234 (514)
Q Consensus 160 ~--~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~ 234 (514)
+ ..+.|+||||+++|...+...+..+|++|+|+|++.... + ......+..+.. .++| +++|+||+|+.
T Consensus 71 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 143 (200)
T 2o52_A 71 GKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET---Y---NSLAAWLTDARTLASPNIV-VILCGNKKDLD 143 (200)
T ss_dssp TEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHTCTTCE-EEEEEECGGGG
T ss_pred CeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECCCcc
Confidence 4 689999999999887777777889999999999987532 1 122333333333 3677 99999999983
Q ss_pred CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 235 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... ..... +...+.+.. .++++++||++|.|+.++++
T Consensus 144 ~~~--~v~~~----~~~~~~~~~------~~~~~~~SA~~g~gi~~l~~ 180 (200)
T 2o52_A 144 PER--EVTFL----EASRFAQEN------ELMFLETSALTGENVEEAFL 180 (200)
T ss_dssp GGC--CSCHH----HHHHHHHHT------TCEEEEECTTTCTTHHHHHH
T ss_pred ccc--ccCHH----HHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 211 11111 122233333 35899999999999998754
No 106
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.71 E-value=5.2e-17 Score=148.17 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=96.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|++|+|||||+++|+... .... .....+.... ..+..+
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~--~~~~---------------------------~~~t~~~~~~---~~~~~~ 53 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSY--FVSD---------------------------YDPTIEDSYT---KICSVD 53 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSS--CCSS---------------------------CCTTCCEEEE---EEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCc--Cccc---------------------------cCCCcCceEE---EEEEEC
Confidence 3467899999999999999999995431 1100 0000111111 233444
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-H---HcCCCeEEEEEeeccC
Q 010278 160 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-K---TLGVTKLLLVVNKMDD 233 (514)
Q Consensus 160 ~--~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~-~---~~~vp~~IvviNK~D~ 233 (514)
+ ..+.|+||||+++|.......+..+|++|+|+|+..... + ......+..+ . ..++| +++|+||+|+
T Consensus 54 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 126 (181)
T 2fn4_A 54 GIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQS---F---NEVGKLFTQILRVKDRDDFP-VVLVGNKADL 126 (181)
T ss_dssp TEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHTSSCCC-EEEEEECGGG
T ss_pred CEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 4 578999999999997777777889999999999987421 1 0122222222 2 24678 9999999998
Q ss_pred CCCC-chHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 234 HTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 234 ~~~~-~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.... .... +...+.... .++++++||++|.|+.++++
T Consensus 127 ~~~~~v~~~-------~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~~ 164 (181)
T 2fn4_A 127 ESQRQVPRS-------EASAFGASH------HVAYFEASAKLRLNVDEAFE 164 (181)
T ss_dssp GGGCCSCHH-------HHHHHHHHT------TCEEEECBTTTTBSHHHHHH
T ss_pred ccccccCHH-------HHHHHHHHc------CCeEEEecCCCCCCHHHHHH
Confidence 4211 1111 122222232 35899999999999998654
No 107
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.71 E-value=9.5e-17 Score=148.93 Aligned_cols=157 Identities=18% Similarity=0.162 Sum_probs=99.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+..+|+++|++|+|||||+++|.... ... ...|+......+..++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~--~~~--------------------------------~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDR--LAT--------------------------------LQPTWHPTSEELAIGN 66 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSC--CCC--------------------------------CCCCCSCEEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC--CCc--------------------------------cccCCCCCeEEEEECC
Confidence 456799999999999999999995321 100 1112222334566778
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~ 236 (514)
..+.++||||+++|...+...++.+|++|+|+|++.+.. | ....+.+..+.. .++| +++|+||+|+...
T Consensus 67 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 139 (190)
T 1m2o_B 67 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPER---F---DEARVELDALFNIAELKDVP-FVILGNKIDAPNA 139 (190)
T ss_dssp EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHH---H---HHHHHHHHHHHcchhhcCCC-EEEEEECCCCcCC
Confidence 999999999999988777677789999999999987531 1 122233333322 4677 9999999999531
Q ss_pred CchHHHHHHHHhhhhhhh-hhcc-CcccCCeeEEeecccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFL-KASG-YNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l-~~~g-~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
.+. +++.+.+.... ...| +.....++++++||++|.|+.+++
T Consensus 140 -~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 183 (190)
T 1m2o_B 140 -VSE---AELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 183 (190)
T ss_dssp -CCH---HHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHH
T ss_pred -CCH---HHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHH
Confidence 122 22222221110 0000 000125789999999999999853
No 108
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.71 E-value=6.9e-17 Score=152.71 Aligned_cols=153 Identities=13% Similarity=0.142 Sum_probs=98.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|++++|||||+++|+... .. ......++.+.....+.+.
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~ 70 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNK--FN-----------------------------PKFITTVGIDFREKRVVYN 70 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSC--CC-----------------------------CEEEEEEEEEEEEEEEEEE
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCC--CC-----------------------------cCCCCceeEEEEEEEEEEC
Confidence 3567999999999999999999994321 10 0001112222222222222
Q ss_pred ------------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCe
Q 010278 160 ------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTK 223 (514)
Q Consensus 160 ------------~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~ 223 (514)
...+.|+||||+++|...+...+..+|++|+|+|++.... + ......+..+.. .++|
T Consensus 71 ~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s---~---~~~~~~l~~i~~~~~~~~~p- 143 (217)
T 2f7s_A 71 AQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQS---F---LNVRNWMSQLQANAYCENPD- 143 (217)
T ss_dssp C-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHH---H---HHHHHHHHTCCCCCTTTCCE-
T ss_pred CccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCcCCCC-
Confidence 5689999999999998888888899999999999987521 0 011122222211 3566
Q ss_pred EEEEEeeccCCCC-CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 224 LLLVVNKMDDHTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 224 ~IvviNK~D~~~~-~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+++|+||+|+... .... .++..+.+..+ ++++++||++|.|+.++++
T Consensus 144 iilV~NK~Dl~~~~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 191 (217)
T 2f7s_A 144 IVLIGNKADLPDQREVNE-------RQARELADKYG------IPYFETSAATGQNVEKAVE 191 (217)
T ss_dssp EEEEEECTTCGGGCCSCH-------HHHHHHHHHTT------CCEEEEBTTTTBTHHHHHH
T ss_pred EEEEEECCccccccccCH-------HHHHHHHHHCC------CcEEEEECCCCCCHHHHHH
Confidence 8999999998421 1111 22233334433 5799999999999998755
No 109
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.71 E-value=2.7e-17 Score=150.23 Aligned_cols=156 Identities=14% Similarity=0.142 Sum_probs=88.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
.++.++|+++|++|+|||||+++|+...- .. .....++.+.....+..+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~ 53 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKY--SQ-----------------------------QYKATIGADFLTKEVTVD 53 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCC--CT-----------------------------TC---CCCSCEEEEECCS
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcC--Cc-----------------------------ccCCccceEEEEEEEEEc
Confidence 35678999999999999999999954221 10 001112222222333333
Q ss_pred ---CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-------cCCCeEEEEEe
Q 010278 160 ---TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-------LGVTKLLLVVN 229 (514)
Q Consensus 160 ---~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~-------~~vp~~IvviN 229 (514)
...+.|+||||+++|.......+..+|++|+|+|+..... + ......+..+.. .++| +++++|
T Consensus 54 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~~~p-~ilv~n 126 (182)
T 1ky3_A 54 GDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASS---F---ENIKSWRDEFLVHANVNSPETFP-FVILGN 126 (182)
T ss_dssp SSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHHCCSCTTTCC-EEEEEE
T ss_pred CCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHH---H---HHHHHHHHHHHHHhcccCcCCCc-EEEEEE
Confidence 4689999999999998888888899999999999987532 1 122222222222 4677 899999
Q ss_pred eccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 230 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 230 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|+|+...... ... .++..+.+.. ...+++++||++|.|+.++++
T Consensus 127 K~Dl~~~~~~-v~~----~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~ 170 (182)
T 1ky3_A 127 KIDAEESKKI-VSE----KSAQELAKSL-----GDIPLFLTSAKNAINVDTAFE 170 (182)
T ss_dssp CTTSCGGGCC-SCH----HHHHHHHHHT-----TSCCEEEEBTTTTBSHHHHHH
T ss_pred CCcccccccc-CCH----HHHHHHHHhc-----CCCeEEEEecCCCCCHHHHHH
Confidence 9998322100 001 1122222211 146899999999999998654
No 110
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=9.9e-17 Score=149.02 Aligned_cols=153 Identities=18% Similarity=0.155 Sum_probs=97.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+.++|+++|++++|||||+++|+... ..... ....+.+.. ....+....
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~---------------------------~~t~~~~~~-~~~~~~~~~ 55 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGT--FRDTY---------------------------IPTIEDTYR-QVISCDKSV 55 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSC--CCCTT---------------------------SCCCCEEEE-EEEEETTEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCC--CCCcc---------------------------cCcccccee-EEEEECCEE
Confidence 456899999999999999999995421 11000 000111111 111222234
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-----cCCCeEEEEEeeccCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~-----~~vp~~IvviNK~D~~~ 235 (514)
..+.|+||||+++|...+...+..+|++|+|+|++.... ++ .....+..+.. .++| +|+|+||+|+..
T Consensus 56 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~~ 128 (199)
T 2gf0_A 56 CTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQS---LE---ELGPIYKLIVQIKGSVEDIP-VMLVGNKCDETQ 128 (199)
T ss_dssp EEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHH---HH---TTHHHHHHHHHHHSCGGGSC-EEEEEECTTCSS
T ss_pred EEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHHhcCCCCCC-EEEEEECccCCc
Confidence 578999999999998888888899999999999986421 11 22233333332 2678 999999999953
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
....... ...+...++ ++++++||++|.|+.++++
T Consensus 129 ~~~~~~~-------~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 163 (199)
T 2gf0_A 129 REVDTRE-------AQAVAQEWK------CAFMETSAKMNYNVKELFQ 163 (199)
T ss_dssp CSSCHHH-------HHHHHHHHT------CEEEECBTTTTBSHHHHHH
T ss_pred cccCHHH-------HHHHHHHhC------CeEEEEecCCCCCHHHHHH
Confidence 2222221 222233333 5799999999999998644
No 111
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.70 E-value=2.7e-17 Score=154.16 Aligned_cols=153 Identities=20% Similarity=0.162 Sum_probs=100.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
...++|+++|++++|||||+++|+...- . ......++.+.....+..++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~~~~~~ 54 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTY--T-----------------------------NDYISTIGVDFKIKTVELDG 54 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCC--C-----------------------------TTCCCSSCCCEEEEEEEETT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC--C-----------------------------CCCCCcccceeEEEEEEECC
Confidence 4568999999999999999999954221 0 01112233333333344444
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCC
Q 010278 161 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 161 --~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~~ 235 (514)
..+.|+||||+++|...+...+..+|++|+|+|++.... + ......+..+.. .++| +++|+||+|+..
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 127 (206)
T 2bcg_Y 55 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQES---F---NGVKMWLQEIDRYATSTVL-KLLVGNKCDLKD 127 (206)
T ss_dssp EEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECTTCTT
T ss_pred EEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECCCCcc
Confidence 589999999999998777777889999999999987532 1 122223333333 2466 899999999943
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. .... ++...+.+..+ ++++++||++|.|+.+++.
T Consensus 128 ~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 128 KR--VVEY----DVAKEFADANK------MPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp TC--CSCH----HHHHHHHHHTT------CCEEECCTTTCTTHHHHHH
T ss_pred cc--ccCH----HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 21 1111 11222333333 5799999999999998755
No 112
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.70 E-value=9.2e-17 Score=150.09 Aligned_cols=153 Identities=18% Similarity=0.131 Sum_probs=99.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|++|+|||||+++|+... ... ...+.+.......+..+
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~------------------------------~~~~t~~~~~~~~~~~~ 58 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDE--FVE------------------------------DYEPTKADSYRKKVVLD 58 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSC--CCT------------------------------TCCTTCCEEEEEEEEET
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCC--CCC------------------------------CCCCccceEEEEEEEEC
Confidence 4567899999999999999999995422 110 00111111112223344
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccC
Q 010278 160 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 233 (514)
Q Consensus 160 ~--~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~ 233 (514)
+ ..+.|+||||+++|.......+..+|++|+|+|++.... +. .....+..+.. .++| +++|+||+|+
T Consensus 59 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 131 (206)
T 2bov_A 59 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---FA---ATADFREQILRVKEDENVP-FLLVGNKSDL 131 (206)
T ss_dssp TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHTTCSCCC-EEEEEECTTC
T ss_pred CEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEeccCc
Confidence 4 579999999999999888888899999999999986421 10 12222233322 2678 9999999998
Q ss_pred CCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 234 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 234 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... .+... +++..+++..+ ++++++||++|.|+.++++
T Consensus 132 ~~~--~~~~~----~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 169 (206)
T 2bov_A 132 EDK--RQVSV----EEAKNRAEQWN------VNYVETSAKTRANVDKVFF 169 (206)
T ss_dssp GGG--CCSCH----HHHHHHHHHHT------CEEEEECTTTCTTHHHHHH
T ss_pred ccc--ccccH----HHHHHHHHHhC------CeEEEEeCCCCCCHHHHHH
Confidence 421 11111 22333344443 5799999999999998755
No 113
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.70 E-value=2.3e-17 Score=152.07 Aligned_cols=149 Identities=23% Similarity=0.270 Sum_probs=102.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+.++|+++|++|+|||||+++|..... ......++|++.....+...+
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~ 53 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENV-------------------------------YIGNWPGVTVEKKEGEFEYNG 53 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCE-------------------------------EEEECTTSCCEEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc-------------------------------cccCCCCeeccceEEEEEeCC
Confidence 4668999999999999999999943210 012235677776667777888
Q ss_pred eEEEEEeCCCCcchHH------HHHHhh--hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010278 161 TRFTILDAPGHKSYVP------NMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 232 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~------~~~~g~--~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D 232 (514)
..+.|+||||+.+|.. .....+ ..+|++++|+|+... .+....+..+...+.| ++++.||+|
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~~~~~~~~p-iilv~nK~D 123 (188)
T 2wjg_A 54 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---------ERNLYLTLQLMEMGAN-LLLALNKMD 123 (188)
T ss_dssp EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH---------HHHHHHHHHHHTTTCC-EEEEEECHH
T ss_pred cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH---------HHHHHHHHHHHhcCCC-EEEEEEhhh
Confidence 9999999999988731 111112 359999999998752 2445566666667888 899999999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+.... .+......+.+.++ ++++++||++|.|+.++++
T Consensus 124 l~~~~-------~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~ 161 (188)
T 2wjg_A 124 LAKSL-------GIEIDVDKLEKILG------VKVVPLSAAKKMGIEELKK 161 (188)
T ss_dssp HHHHT-------TCCCCHHHHHHHHT------SCEEECBGGGTBSHHHHHH
T ss_pred ccccc-------cchHHHHHHHHHhC------CCeEEEEecCCCCHHHHHH
Confidence 83110 01112233333333 4799999999999998644
No 114
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.70 E-value=5.7e-18 Score=166.45 Aligned_cols=146 Identities=18% Similarity=0.151 Sum_probs=98.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeE
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 162 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~ 162 (514)
.++|+++|++|+|||||+++|.+..-. .....|+|++.....+.. +..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-------------------------------v~~~pg~tv~~~~~~~~~-~~~ 50 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-------------------------------VGNWPGVTVERKSGLVKK-NKD 50 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-------------------------------CCSSSCCCCSCEEEECTT-CTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-------------------------------ccCCCCCcEEEEEEEEec-CCe
Confidence 478999999999999999999422100 112257777766666655 778
Q ss_pred EEEEeCCCCcchHH------HHHHhh--hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCC
Q 010278 163 FTILDAPGHKSYVP------NMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 234 (514)
Q Consensus 163 i~liDtPGh~~f~~------~~~~g~--~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~ 234 (514)
+.|+||||+.+|.. .....+ ..+|++|+|+|++.. ......+..+...++| +|+|+||+|+.
T Consensus 51 l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~---------e~~~~~~~~l~~~~~p-~ilv~NK~Dl~ 120 (272)
T 3b1v_A 51 LEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL---------ERNLYLTTQLIETGIP-VTIALNMIDVL 120 (272)
T ss_dssp EEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH---------HHHHHHHHHHHHTCSC-EEEEEECHHHH
T ss_pred EEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch---------HhHHHHHHHHHhcCCC-EEEEEEChhhC
Confidence 99999999988741 111112 369999999999763 1334444556668999 99999999983
Q ss_pred CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 235 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... .+......+.+.+| ++++++||++|.|+.++++
T Consensus 121 ~~~-------~~~~~~~~l~~~lg------~~vi~~SA~~g~gi~el~~ 156 (272)
T 3b1v_A 121 DGQ-------GKKINVDKLSYHLG------VPVVATSALKQTGVDQVVK 156 (272)
T ss_dssp HHT-------TCCCCHHHHHHHHT------SCEEECBTTTTBSHHHHHH
T ss_pred CcC-------CcHHHHHHHHHHcC------CCEEEEEccCCCCHHHHHH
Confidence 110 01112222333333 5899999999999998643
No 115
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.70 E-value=6.4e-17 Score=150.36 Aligned_cols=154 Identities=16% Similarity=0.190 Sum_probs=96.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
.++.++|+++|++|+|||||+++|+. +.... ...|+......+...
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~--~~~~~--------------------------------~~~t~~~~~~~~~~~ 71 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKL--GEIVT--------------------------------TIPTIGFNVETVEYK 71 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCS--SCCEE--------------------------------EEEETTEEEEEEEET
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHh--CCccc--------------------------------cCCcCceeEEEEEEC
Confidence 45678999999999999999999832 11100 011222233446668
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~ 235 (514)
+..+.|+||||+++|...+...+..+|++|+|+|++.... + ....+.+..+.. .++| +++|+||+|+..
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~---~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~ 144 (192)
T 2b6h_A 72 NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---V---QESADELQKMLQEDELRDAV-LLVFANKQDMPN 144 (192)
T ss_dssp TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHhcccccCCCe-EEEEEECCCCCC
Confidence 8999999999999998777777889999999999987521 1 122233333322 2677 999999999943
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. ..+++.+.+.... .. ...++++++||++|.|+.++++
T Consensus 145 ~~----~~~~i~~~~~~~~----~~-~~~~~~~~~SA~~g~gi~~l~~ 183 (192)
T 2b6h_A 145 AM----PVSELTDKLGLQH----LR-SRTWYVQATCATQGTGLYDGLD 183 (192)
T ss_dssp CC----CHHHHHHHTTGGG----CS-SCCEEEEECBTTTTBTHHHHHH
T ss_pred CC----CHHHHHHHhCccc----cc-CCceEEEECcCCCcCCHHHHHH
Confidence 21 1223333322111 11 1247899999999999998643
No 116
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1.2e-16 Score=144.25 Aligned_cols=152 Identities=15% Similarity=0.133 Sum_probs=96.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
+.++|+++|++|+|||||+++|+... .... .....+.+.. ....+.....
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~~---------------------------~~~t~~~~~~-~~~~~~~~~~ 51 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGT--FRES---------------------------YIPTVEDTYR-QVISCDKSIC 51 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCC--CCSS---------------------------CCCCSCEEEE-EEEEETTEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCC--CCCC---------------------------CCCCccccEE-EEEEECCEEE
Confidence 35789999999999999999995321 1000 0000111111 1112222345
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-----cCCCeEEEEEeeccCCCC
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~-----~~vp~~IvviNK~D~~~~ 236 (514)
.+.|+||||+++|.......+..+|++|+|+|++.... + .+....+..+.. .++| +++++||+|+...
T Consensus 52 ~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~---~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~~~ 124 (172)
T 2erx_A 52 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQS---L---EELKPIYEQICEIKGDVESIP-IMLVGNKCDESPS 124 (172)
T ss_dssp EEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHH---H---HTTHHHHHHHHHHHC---CCC-EEEEEECGGGGGG
T ss_pred EEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHHhCCCCCCC-EEEEEEccccccc
Confidence 78999999999998888888899999999999986532 1 133344443433 2678 9999999998422
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
. +... .+...+.+.. .++++++||++|.|+.+++
T Consensus 125 ~--~v~~----~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 158 (172)
T 2erx_A 125 R--EVQS----SEAEALARTW------KCAFMETSAKLNHNVKELF 158 (172)
T ss_dssp C--CSCH----HHHHHHHHHH------TCEEEECBTTTTBSHHHHH
T ss_pred c--ccCH----HHHHHHHHHh------CCeEEEecCCCCcCHHHHH
Confidence 1 1001 1112223333 2589999999999999853
No 117
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.70 E-value=7.5e-17 Score=150.72 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=95.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+..+|+++|++|+|||||+++|.. +.+.. ...|+......+..++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~--~~~~~--------------------------------~~~t~~~~~~~~~~~~ 68 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD--DRLGQ--------------------------------HVPTLHPTSEELTIAG 68 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC--C--------------------------------------CCCCCSCEEEEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc--CCCCc--------------------------------cCCCCCceeEEEEECC
Confidence 4567899999999999999999832 11000 0112222234566778
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~ 236 (514)
..+.++||||+++|...+...+..+|++|+|+|+++... | ......+..+.. .++| +++|+||+|+...
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 141 (198)
T 1f6b_A 69 MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHER---L---LESKEELDSLMTDETIANVP-ILILGNKIDRPEA 141 (198)
T ss_dssp EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTSC-EEEEEECTTSTTC
T ss_pred EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCcccCCCc-EEEEEECCCcccc
Confidence 999999999999987766667789999999999987521 1 122333333322 4678 9999999999531
Q ss_pred CchHHHHHHHHhhhhhhhhhcc--Cc--ccCCeeEEeecccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASG--YN--VKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g--~~--~~~~~~iipiSa~~G~gi~~l~ 282 (514)
.+.+...+............. +. ....++++++||++|.|+.+++
T Consensus 142 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~ 190 (198)
T 1f6b_A 142 -ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGF 190 (198)
T ss_dssp -CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHH
T ss_pred -CCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHH
Confidence 222222222111100000000 00 0125789999999999999853
No 118
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.70 E-value=2.2e-17 Score=151.33 Aligned_cols=153 Identities=16% Similarity=0.252 Sum_probs=96.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
++.++|+++|++|+|||||+++|+. +.... ...|+......+..++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~--~~~~~--------------------------------~~~t~~~~~~~~~~~~ 61 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI--GEVVT--------------------------------TKPTIGFNVETLSYKN 61 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC--SEEEE--------------------------------ECSSTTCCEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc--CCcCc--------------------------------cCCcCccceEEEEECC
Confidence 5679999999999999999999832 11100 0111112223455678
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~ 236 (514)
..+.|+||||+++|...+...+..+|++|+|+|++.... + ....+.+..+.. .++| +++|+||+|+...
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 134 (183)
T 1moz_A 62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDR---M---STASKELHLMLQEEELQDAA-LLVFANKQDQPGA 134 (183)
T ss_dssp EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTT---H---HHHHHHHHHHTTSSTTSSCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHcChhhCCCe-EEEEEECCCCCCC
Confidence 999999999999988777777889999999999987521 1 122333333332 4567 9999999998432
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. . .+++.+.+ ...... ...++++++||++|.|+.++++
T Consensus 135 ~-~---~~~i~~~~----~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 172 (183)
T 1moz_A 135 L-S---ASEVSKEL----NLVELK-DRSWSIVASSAIKGEGITEGLD 172 (183)
T ss_dssp C-C---HHHHHHHT----TTTTCC-SSCEEEEEEBGGGTBTHHHHHH
T ss_pred C-C---HHHHHHHh----Cccccc-CCceEEEEccCCCCcCHHHHHH
Confidence 1 1 22222222 211111 1246899999999999998644
No 119
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.70 E-value=9e-17 Score=144.68 Aligned_cols=151 Identities=18% Similarity=0.129 Sum_probs=81.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeE
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 162 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~ 162 (514)
.++|+++|++|+|||||+++|...... ......|.+.. ....+......
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~------------------------------~~~~~~~~~~~-~~~~~~~~~~~ 50 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG------------------------------PEAEAAGHTYD-RSIVVDGEEAS 50 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------------------------------------CEEE-EEEEETTEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc------------------------------CCCCccccceE-EEEEECCEEEE
Confidence 478999999999999999998421100 00111333332 12223333467
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCCCc
Q 010278 163 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNW 238 (514)
Q Consensus 163 i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~~~ 238 (514)
+.++||||++.|.......+..+|++++|+|++.... + ......+..+.. .++| +++|+||+|+....
T Consensus 51 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~- 122 (166)
T 3q72_A 51 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGS---F---EKASELRVQLRRARQTDDVP-IILVGNKSDLVRSR- 122 (166)
T ss_dssp EEEEECC---------------CCEEEEEEETTCHHH---H---HHHHHHHHHHHHCC---CCC-EEEEEECTTCCSSC-
T ss_pred EEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEecccccccc-
Confidence 8999999999998777777889999999999986421 1 122333333333 3678 89999999984321
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
....+ +...+.... .++++++||++|.|+.++++
T Consensus 123 -~~~~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 156 (166)
T 3q72_A 123 -EVSVD----EGRACAVVF------DCKFIETSAALHHNVQALFE 156 (166)
T ss_dssp -CSCHH----HHHHHHHHT------TCEEEECBGGGTBSHHHHHH
T ss_pred -ccCHH----HHHHHHHHh------CCcEEEeccCCCCCHHHHHH
Confidence 11111 112222332 35899999999999998644
No 120
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.70 E-value=3.6e-17 Score=155.32 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=106.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
...+.++|+++|++|+|||||+++|+...-. .......|.|.......+..
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~ 61 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFE-----------------------------KKYVATLGVEVHPLVFHTNR 61 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHT-----------------------------CEEETTTTEEEEEEEEEETT
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCC-----------------------------CCCCCccceeEEEEEEEECC
Confidence 3456799999999999999999996422100 00112256666666665655
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCC
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~vp~~IvviNK~D~~~~ 236 (514)
....+.|+||||+++|...+...+..+|++|+|+|++.... + ......+..+... ++| +|+|+||+|+...
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVT---Y---KNVPNWHRDLVRVCENIP-IVLCGNKVDIKDR 134 (221)
T ss_dssp EEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHSTTCC-EEEEEECTTSSSC
T ss_pred EEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCC-EEEEEECCccccc
Confidence 66789999999999997777777889999999999987532 1 1222333333332 778 9999999999432
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. ..+...+.+..+ ++++++||++|.|+.++++
T Consensus 135 ~~--------~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 167 (221)
T 3gj0_A 135 KV--------KAKSIVFHRKKN------LQYYDISAKSNYNFEKPFL 167 (221)
T ss_dssp SS--------CGGGCCHHHHHT------CEEEECBGGGTBTTTHHHH
T ss_pred cc--------cHHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 21 123333344433 5899999999999998654
No 121
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.69 E-value=2.7e-16 Score=144.62 Aligned_cols=152 Identities=19% Similarity=0.227 Sum_probs=99.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+.++|+++|++|+|||||+++|... ... ......|.+ ...+..++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~--~~~----------------------------~~~~t~g~~----~~~~~~~~ 59 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE--DIS----------------------------HITPTQGFN----IKSVQSQG 59 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS--CCE----------------------------EEEEETTEE----EEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC--CCC----------------------------cccCcCCeE----EEEEEECC
Confidence 45689999999999999999998421 000 000112322 23455668
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-H---HcCCCeEEEEEeeccCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-K---TLGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~-~---~~~vp~~IvviNK~D~~~~ 236 (514)
..+.++||||++.|...+...+..+|++|+|+|++.... + ....+.+..+ . ..++| ++++.||+|+...
T Consensus 60 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 132 (181)
T 1fzq_A 60 FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKR---F---EETGQELTELLEEEKLSCVP-VLIFANKQDLLTA 132 (181)
T ss_dssp EEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGG---H---HHHHHHHHHHTTCGGGTTCC-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHH---H---HHHHHHHHHHHhChhhcCCC-EEEEEECcCcccC
Confidence 999999999999998888888899999999999986521 1 1222233322 2 23677 9999999999432
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
. ..+++.+.+.. .... ...++++++||++|.|+.+++
T Consensus 133 ~----~~~~~~~~~~~----~~~~-~~~~~~~~~Sa~~g~gi~~l~ 169 (181)
T 1fzq_A 133 A----PASEIAEGLNL----HTIR-DRVWQIQSCSALTGEGVQDGM 169 (181)
T ss_dssp C----CHHHHHHHTTG----GGCC-SSCEEEEECCTTTCTTHHHHH
T ss_pred C----CHHHHHHHhCc----hhcc-CCceEEEEccCCCCCCHHHHH
Confidence 2 11223222211 1111 124789999999999999854
No 122
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.69 E-value=1.3e-16 Score=146.21 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=97.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|++|+|||||+++|+.. .... .....+.... ...+..+
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~--~~~~-----------------------------~~~~t~~~~~-~~~~~~~ 62 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQK--IFVD-----------------------------DYDPTIEDSY-LKHTEID 62 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHS--CCCS-----------------------------CCCTTCCEEE-EEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC--CCCC-----------------------------CCCCCcccee-EEEEEeC
Confidence 456799999999999999999999532 1110 0001111111 2233344
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH----HHcCCCeEEEEEeeccC
Q 010278 160 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 160 ~--~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~----~~~~vp~~IvviNK~D~ 233 (514)
+ ..+.|+||||+++|.......+..+|++|+|+|+++... ++ ...+.+..+ ...++| +|+|+||+|+
T Consensus 63 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 135 (183)
T 3kkq_A 63 NQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKAS---FE---HVDRFHQLILRVKDRESFP-MILVANKVDL 135 (183)
T ss_dssp TEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHTSSCCC-EEEEEECTTC
T ss_pred CcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EEEEEECCCc
Confidence 4 456779999999998877777889999999999987532 11 122222222 235678 8999999998
Q ss_pred CCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccc-cccccccccc
Q 010278 234 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGL-MGLNMKTRVD 283 (514)
Q Consensus 234 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~-~G~gi~~l~~ 283 (514)
.... .... ++...+.+..+ ++++++||+ +|.|+.++++
T Consensus 136 ~~~~--~v~~----~~~~~~~~~~~------~~~~~~Sa~~~~~~v~~l~~ 174 (183)
T 3kkq_A 136 MHLR--KVTR----DQGKEMATKYN------IPYIETSAKDPPLNVDKTFH 174 (183)
T ss_dssp STTC--CSCH----HHHHHHHHHHT------CCEEEEBCSSSCBSHHHHHH
T ss_pred hhcc--CcCH----HHHHHHHHHhC------CeEEEeccCCCCCCHHHHHH
Confidence 4311 1111 12233344443 579999999 9999998644
No 123
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.69 E-value=8.5e-17 Score=146.86 Aligned_cols=145 Identities=18% Similarity=0.179 Sum_probs=96.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
+..+|+++|++|+|||||+++|....... .....|.|.+.....+..++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~~ 52 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAI------------------------------VTDIAGTTRDVLREHIHIDGM 52 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSC------------------------------CCSSTTCCCSCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcce------------------------------eeCCCCceeceeeEEEEECCe
Confidence 34689999999999999999995322110 011245555555556677788
Q ss_pred EEEEEeCCCCcchH--------HHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEee
Q 010278 162 RFTILDAPGHKSYV--------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNK 230 (514)
Q Consensus 162 ~i~liDtPGh~~f~--------~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK 230 (514)
.+.|+||||++++. ......+..+|++|+|+|++.... .+..+.+..+... ++| +|+|+||
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s-------~~~~~~~~~~~~~~~~~~p-~ilv~NK 124 (172)
T 2gj8_A 53 PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDA-------VDPAEIWPEFIARLPAKLP-ITVVRNK 124 (172)
T ss_dssp EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCC-------CSHHHHCHHHHHHSCTTCC-EEEEEEC
T ss_pred EEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHhcccCCC-EEEEEEC
Confidence 89999999987531 112234678999999999987643 1233333334332 578 8999999
Q ss_pred ccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 231 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 231 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+|+.... ..+.+. ...+++++||++|.|+.++++
T Consensus 125 ~Dl~~~~-------------~~~~~~------~~~~~~~~SA~~g~gv~~l~~ 158 (172)
T 2gj8_A 125 ADITGET-------------LGMSEV------NGHALIRLSARTGEGVDVLRN 158 (172)
T ss_dssp HHHHCCC-------------CEEEEE------TTEEEEECCTTTCTTHHHHHH
T ss_pred ccCCcch-------------hhhhhc------cCCceEEEeCCCCCCHHHHHH
Confidence 9983210 001111 146899999999999998644
No 124
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.69 E-value=6.7e-17 Score=149.39 Aligned_cols=152 Identities=13% Similarity=0.132 Sum_probs=95.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
.++.++|+++|++++|||||+++|+... ... .....++.+.....+..+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~-----------------------------~~~~t~~~~~~~~~~~~~ 65 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGR--FPD-----------------------------RTEATIGVDFRERAVDID 65 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSS--CCS-----------------------------SCCCCCSCCEEEEEEEET
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCC--CCC-----------------------------CCCCCcceEEEEEEEEEC
Confidence 4567999999999999999999995421 110 001122222222334444
Q ss_pred C--eEEEEEeCCCCcchH-HHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeecc
Q 010278 160 T--TRFTILDAPGHKSYV-PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMD 232 (514)
Q Consensus 160 ~--~~i~liDtPGh~~f~-~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D 232 (514)
+ ..+.|+||||+++|. ......++.+|++|+|+|++.... ++ .....+..+.. .++| +++|+||+|
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~D 138 (189)
T 1z06_A 66 GERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMAS---FH---SLPAWIEECKQHLLANDIP-RILVGNKCD 138 (189)
T ss_dssp TEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHH---HH---THHHHHHHHHHHCCCSCCC-EEEEEECTT
T ss_pred CEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECcc
Confidence 4 689999999999987 556666789999999999987422 11 22222333322 3677 999999999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccc---cccccc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG---LNMKTR 281 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G---~gi~~l 281 (514)
+.... +... ++...+.+..+ ++++++||++| .|+.++
T Consensus 139 l~~~~--~v~~----~~~~~~~~~~~------~~~~~~Sa~~~~~~~~i~~l 178 (189)
T 1z06_A 139 LRSAI--QVPT----DLAQKFADTHS------MPLFETSAKNPNDNDHVEAI 178 (189)
T ss_dssp CGGGC--CSCH----HHHHHHHHHTT------CCEEECCSSSGGGGSCHHHH
T ss_pred ccccc--eeCH----HHHHHHHHHcC------CEEEEEeCCcCCcccCHHHH
Confidence 83221 1011 12222333333 57999999999 777664
No 125
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.69 E-value=3.9e-17 Score=150.87 Aligned_cols=153 Identities=20% Similarity=0.238 Sum_probs=99.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
++.++|+++|++|+|||||+++|.. +.... ...|+......+..++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~--~~~~~--------------------------------~~~t~~~~~~~~~~~~ 65 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL--GDVVT--------------------------------TVPTVGVNLETLQYKN 65 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC--SCCEE--------------------------------ECSSTTCCEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc--CCCCC--------------------------------cCCCCceEEEEEEECC
Confidence 4678999999999999999999832 11100 0011112223455678
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~ 236 (514)
..+.|+||||+++|...+...+..+|++|+|+|+++... + ....+.+..+.. .++| +++|+||+|+...
T Consensus 66 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 138 (189)
T 2x77_A 66 ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDR---M---GVAKHELYALLDEDELRKSL-LLIFANKQDLPDA 138 (189)
T ss_dssp EEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTT---H---HHHHHHHHHHHTCSTTTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhhhhcCCCe-EEEEEECCCCcCC
Confidence 999999999999987766667789999999999987521 1 122233333322 3677 9999999999432
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. ..+++.+.+.. .... ...++++++||++|.|+.++++
T Consensus 139 ~----~~~~~~~~~~~----~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 176 (189)
T 2x77_A 139 A----SEAEIAEQLGV----SSIM-NRTWTIVKSSSKTGDGLVEGMD 176 (189)
T ss_dssp C----CHHHHHHHTTG----GGCC-SSCEEEEECCTTTCTTHHHHHH
T ss_pred C----CHHHHHHHhCh----hhcc-CCceEEEEccCCCccCHHHHHH
Confidence 1 11233332221 0111 1246899999999999998644
No 126
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.69 E-value=3.9e-17 Score=152.82 Aligned_cols=160 Identities=13% Similarity=0.097 Sum_probs=98.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
...++|+++|++|+|||||+++|...... . .....++.... ..+..++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~-----------------------------~~~~t~~~~~~-~~~~~~~ 70 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFP--E-----------------------------VYVPTVFENYI-ADIEVDG 70 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCC--S-----------------------------SCCCSSCCCCE-EEEEETT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCC--c-----------------------------ccCCcccceEE-EEEEECC
Confidence 35689999999999999999999542211 0 00011111110 1133333
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCC
Q 010278 161 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 161 --~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~vp~~IvviNK~D~~~~ 236 (514)
..+.|+||||+++|.......+..+|++|+|+|++.... ++ ......+..+... ++| +++|+||+|+...
T Consensus 71 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~--~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 144 (201)
T 2gco_A 71 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS---LE--NIPEKWTPEVKHFCPNVP-IILVGNKKDLRQD 144 (201)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH--HHHHTHHHHHHHHSTTCC-EEEEEECGGGTTC
T ss_pred EEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHHhCCCCC-EEEEEecHHhhcC
Confidence 578999999999998777777889999999999986421 10 1112334444444 788 9999999999432
Q ss_pred CchHHHHHH------HHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~------i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
....+.+.+ ..++...+.+.+++ .+++++||++|.|+.++++
T Consensus 145 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~~l~~ 192 (201)
T 2gco_A 145 EHTRRELAKMKQEPVRSEEGRDMANRISA-----FGYLECSAKTKEGVREVFE 192 (201)
T ss_dssp HHHHHHHHTTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHHH
T ss_pred ccchhhhcccccCcCCHHHHHHHHHhCCC-----cEEEEeeCCCCCCHHHHHH
Confidence 111111110 01122333344432 3799999999999998644
No 127
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.69 E-value=6.6e-17 Score=153.87 Aligned_cols=153 Identities=18% Similarity=0.166 Sum_probs=96.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
...++|+++|++++|||||+++|+...... .....++.+.....+...+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~ 59 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNM-------------------------------DSKSTIGVEFATRTLEIEG 59 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC-------------------------------------CCSEEEEEEEETT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCC-------------------------------CCCCcccceeEEEEEEECC
Confidence 457899999999999999999995422110 0001122222223344454
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCC
Q 010278 161 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 235 (514)
Q Consensus 161 --~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK~D~~~ 235 (514)
..+.|+||||+++|...+...++.+|++|+|+|++.... + ....+.+..+... ++| +++|+||+|+..
T Consensus 60 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s---~---~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~ 132 (223)
T 3cpj_B 60 KRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSS---Y---ENCNHWLSELRENADDNVA-VGLIGNKSDLAH 132 (223)
T ss_dssp EEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHH---H---HHHHHHHHHHHHHCC--CE-EEEEECCGGGGG
T ss_pred EEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhCCCCCe-EEEEEECccccc
Confidence 689999999999998777777889999999999987532 1 1222333444433 677 899999999842
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. .... .+...+.+.. .++++++||++|.|+.++++
T Consensus 133 ~~--~v~~----~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 168 (223)
T 3cpj_B 133 LR--AVPT----EESKTFAQEN------QLLFTETSALNSENVDKAFE 168 (223)
T ss_dssp GC--CSCH----HHHHHHHHHT------TCEEEECCCC-CCCHHHHHH
T ss_pred cc--ccCH----HHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 11 1011 1222333333 35899999999999998644
No 128
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.69 E-value=1.5e-16 Score=159.27 Aligned_cols=161 Identities=14% Similarity=0.201 Sum_probs=106.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe-CCe
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETT 161 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~-~~~ 161 (514)
..+|+++|.+|+|||||+++|+...... .....|.|++.....+.. ++.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~------------------------------~~~~~~~Ti~~~~~~~~~~~~~ 52 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAF------------------------------DTRRLGATIDVEHSHLRFLGNM 52 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTG------------------------------GGGGCCCCCSEEEEEEEETTTE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCc------------------------------cccCcCCccceEEEEEEeCCce
Confidence 4789999999999999999984321111 122366777776666664 578
Q ss_pred EEEEEeCCCCcchHHHH-----HHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCC
Q 010278 162 RFTILDAPGHKSYVPNM-----ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDH 234 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~-----~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~vp~~IvviNK~D~~ 234 (514)
.+.|+||||+++|.... ...++.+|++|+|+|++.......+ ....+.+..+... ++| +++|+||+|+.
T Consensus 53 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l---~~~~~~l~~l~~~~~~~p-iilv~NK~Dl~ 128 (307)
T 3r7w_A 53 TLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDI---EIFAKALKQLRKYSPDAK-IFVLLHKMDLV 128 (307)
T ss_dssp EEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHH---HHHHHHHHHHHHHCTTCE-EEEEEECGGGS
T ss_pred EEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHH---HHHHHHHHHHHHhCCCCe-EEEEEeccccc
Confidence 99999999999995433 3334689999999999876321000 0011112222222 777 99999999994
Q ss_pred CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 235 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
..+...+.++....++..+.+.+|+. .++++++||++ .|+.+.
T Consensus 129 ~~~~r~~~~~v~~~~~~~~~~~~g~~---~~~~~~tSa~~-~~i~e~ 171 (307)
T 3r7w_A 129 QLDKREELFQIMMKNLSETSSEFGFP---NLIGFPTSIWD-ESLYKA 171 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTCC---SCEEEECCTTS-SHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHcCCC---CeEEEEeeecC-ChHHHH
Confidence 32122222334556777777777753 47999999999 676664
No 129
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.69 E-value=1.5e-16 Score=168.00 Aligned_cols=150 Identities=19% Similarity=0.216 Sum_probs=87.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
..++|+++|++|+|||||+|+|+.....+ .....|+|.+.....+..+++
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~------------------------------vs~~~gtT~d~~~~~i~~~g~ 281 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAI------------------------------VSHMPGTTRDYIEECFIHDKT 281 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------------------------------------CEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcc------------------------------cCCCCCceEEEEEEEEEECCe
Confidence 45789999999999999999995432111 122367888888888888999
Q ss_pred EEEEEeCCCCcchHHH--------HHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-CCCeEEEEEeecc
Q 010278 162 RFTILDAPGHKSYVPN--------MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMD 232 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~--------~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~-~vp~~IvviNK~D 232 (514)
.++|+||||++++... +...+..+|++|+|+|++++... .+..+...++..+ ++| +|+|+||+|
T Consensus 282 ~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~------~~~~~~~~~l~~l~~~p-iIvV~NK~D 354 (476)
T 3gee_A 282 MFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLD------DELTEIRELKAAHPAAK-FLTVANKLD 354 (476)
T ss_dssp EEEEEC--------------------CCCSSCSEEEEEEETTTCSSG------GGHHHHHHHHHHCTTSE-EEEEEECTT
T ss_pred EEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcch------hhhHHHHHHHHhcCCCC-EEEEEECcC
Confidence 9999999999876422 23356789999999999987431 1222344444444 566 999999999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+.... .... ++ +...++ .+++++||++|.|+.++++
T Consensus 355 l~~~~--~~~~----~~----l~~~~~-----~~~i~vSAktg~GI~eL~~ 390 (476)
T 3gee_A 355 RAANA--DALI----RA----IADGTG-----TEVIGISALNGDGIDTLKQ 390 (476)
T ss_dssp SCTTT--HHHH----HH----HHHHHT-----SCEEECBTTTTBSHHHHHH
T ss_pred CCCcc--chhH----HH----HHhcCC-----CceEEEEECCCCCHHHHHH
Confidence 94322 1111 11 222222 4799999999999998654
No 130
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.69 E-value=4.1e-17 Score=149.40 Aligned_cols=152 Identities=16% Similarity=0.130 Sum_probs=95.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+.++|+++|++|+|||||+++|+... .... .....+.+. ...+..++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~---------------------------~~~t~~~~~---~~~~~~~~ 51 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQ--FVDS---------------------------YDPTIENTF---TKLITVNG 51 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSS--CCSC---------------------------CCTTCCEEE---EEEEEETT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCC--CCCC---------------------------CCCCccccE---EEEEEECC
Confidence 457899999999999999999995321 1100 000122222 22233444
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHH----HHHHHcCCCeEEEEEeeccCC
Q 010278 161 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV----MLAKTLGVTKLLLVVNKMDDH 234 (514)
Q Consensus 161 --~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l----~~~~~~~vp~~IvviNK~D~~ 234 (514)
..+.|+||||+++|.......+..+|++|+|+|+..... ++ .....+ ..+...++| +++|+||+|+.
T Consensus 52 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 124 (181)
T 3t5g_A 52 QEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKS---FE---VIKVIHGKLLDMVGKVQIP-IMLVGNKKDLH 124 (181)
T ss_dssp EEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHC----CC-EEEEEECTTCT
T ss_pred EEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccch
Confidence 678999999999997666666788999999999986421 10 111122 222223678 99999999983
Q ss_pred CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 235 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... .... ++...+.+..+ ++++++||++|.|+.++++
T Consensus 125 ~~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 125 MER--VISY----EEGKALAESWN------AAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp TTC--CSCH----HHHHHHHHHTT------CEEEECCTTSHHHHHHHHH
T ss_pred hcc--eecH----HHHHHHHHHhC------CcEEEEecCCCCCHHHHHH
Confidence 221 1111 22333344443 5899999999999998654
No 131
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.69 E-value=1.6e-16 Score=151.78 Aligned_cols=160 Identities=14% Similarity=0.190 Sum_probs=98.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+.++|+++|.+|+|||||+++|+...-. .....+.|.+.....+...+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~ 75 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-------------------------------VQSYSFTTKNLYVGHFDHKL 75 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE-------------------------------EECC-----CEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-------------------------------cCCCCCcceeeeeeeeecCC
Confidence 35689999999999999999999432100 01113445555555566778
Q ss_pred eEEEEEeCCCC------cch---HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEe
Q 010278 161 TRFTILDAPGH------KSY---VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVN 229 (514)
Q Consensus 161 ~~i~liDtPGh------~~f---~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~vp~~IvviN 229 (514)
..+.|+||||+ +.. ...+......+|++|+|+|++.... ++. ....+.+..+... ++| +++|+|
T Consensus 76 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~-~~~~~~~~~l~~~~~~~p-iilv~n 150 (228)
T 2qu8_A 76 NKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCG---LTI-KEQINLFYSIKSVFSNKS-IVIGFN 150 (228)
T ss_dssp EEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTS---SCH-HHHHHHHHHHHTCC-CCC-EEEEEE
T ss_pred CeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccC---cch-HHHHHHHHHHHHhhcCCc-EEEEEe
Confidence 89999999999 442 1122233567899999999987632 110 1123444445554 788 999999
Q ss_pred eccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 230 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 230 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|+|+.... .........+..+.+..+. .++++++||++|.|+.++++
T Consensus 151 K~Dl~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~SA~~g~gi~~l~~ 197 (228)
T 2qu8_A 151 KIDKCNMD---SLSIDNKLLIKQILDNVKN----PIKFSSFSTLTGVGVEQAKI 197 (228)
T ss_dssp CGGGCC-----CCCHHHHHHHHHHHHHCCS----CEEEEECCTTTCTTHHHHHH
T ss_pred CcccCCch---hhHHHHHHHHHHHHHhcCC----CceEEEEecccCCCHHHHHH
Confidence 99994321 1111122233333443321 26899999999999998754
No 132
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=8.8e-17 Score=149.10 Aligned_cols=159 Identities=16% Similarity=0.106 Sum_probs=99.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+.++|+++|++++|||||+++|+.. ...... ....+... ...+..++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~--~~~~~~---------------------------~~t~~~~~---~~~~~~~~ 63 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYAND--AFPEEY---------------------------VPTVFDHY---AVSVTVGG 63 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHS--SCCCSC---------------------------CCSSCCCE---EEEEESSS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC--CCCCCC---------------------------CCccccee---EEEEEECC
Confidence 46689999999999999999999543 111000 00011111 12233333
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHHc--CCCeEEEEEeeccCCC
Q 010278 161 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHT 235 (514)
Q Consensus 161 --~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~-e~l~~~~~~--~vp~~IvviNK~D~~~ 235 (514)
..+.|+||||+++|...+...++.+|++|+|+|++.... + .... ..+..+... ++| +++|+||+|+..
T Consensus 64 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 136 (194)
T 2atx_A 64 KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPAS---F---QNVKEEWVPELKEYAPNVP-FLLIGTQIDLRD 136 (194)
T ss_dssp CEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHSTTCC-EEEEEECTTSTT
T ss_pred EEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEEChhhcc
Confidence 678999999999998877777889999999999987531 1 0222 234444444 788 999999999943
Q ss_pred CCchHHHHH------HHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYD------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~------~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.......++ -..++...+.+.+++ .+++++||++|.|+.++++
T Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~ 185 (194)
T 2atx_A 137 DPKTLARLNDMKEKPICVEQGQKLAKEIGA-----CCYVECSALTQKGLKTVFD 185 (194)
T ss_dssp CHHHHHHHTTTTCCCCCHHHHHHHHHHHTC-----SCEEECCTTTCTTHHHHHH
T ss_pred cccchhhcccccCcccCHHHHHHHHHHcCC-----cEEEEeeCCCCCCHHHHHH
Confidence 210000000 001223333444442 3799999999999998643
No 133
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.68 E-value=2.7e-16 Score=142.00 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=87.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC--C
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 160 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~--~ 160 (514)
.++|+++|++|+|||||+++|........ .....+.+.....+..+ .
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 50 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHA-------------------------------HEMENSEDTYERRIMVDKEE 50 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------------------------------------CEEEEEEEETTEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccc-------------------------------ccCCCcCCeeeEEEEECCeE
Confidence 47899999999999999999953221100 00111222222233334 3
Q ss_pred eEEEEEeCCCCcchHH-HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc----CCCeEEEEEeeccCCC
Q 010278 161 TRFTILDAPGHKSYVP-NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDHT 235 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~-~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~----~vp~~IvviNK~D~~~ 235 (514)
..+.|+||||+++|.. .....+..+|++|+|+|++.... ++ ...+.+..+... ++| +++|+||+|+..
T Consensus 51 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 123 (169)
T 3q85_A 51 VTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRS---FS---KVPETLLRLRAGRPHHDLP-VILVGNKSDLAR 123 (169)
T ss_dssp EEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSTTSCCC-EEEEEECTTCGG
T ss_pred EEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHH---HH---HHHHHHHHHHhcccCCCCC-EEEEeeCcchhh
Confidence 6788999999998865 33334678999999999987421 11 223333333332 678 999999999842
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. ..... ++...+.+.. .++++++||++|.|+.++++
T Consensus 124 ~--~~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~~ 159 (169)
T 3q85_A 124 S--REVSL----EEGRHLAGTL------SCKHIETSAALHHNTRELFE 159 (169)
T ss_dssp G--CCSCH----HHHHHHHHHT------TCEEEECBTTTTBSHHHHHH
T ss_pred c--ccCCH----HHHHHHHHHc------CCcEEEecCccCCCHHHHHH
Confidence 1 11111 1222333333 35899999999999998644
No 134
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.68 E-value=5.7e-17 Score=163.86 Aligned_cols=154 Identities=18% Similarity=0.197 Sum_probs=98.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
.++.++|+++|++|+|||||+++|+.. .+. + ...|+......+...
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~--~~~------------------------------~--~~pT~~~~~~~~~~~ 207 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLG--EIV------------------------------T--TIPTIGFNVETVEYK 207 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSS--CCE------------------------------E--EEEETTEEEEEEEET
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCC--CCC------------------------------C--cccccceEEEEEecC
Confidence 346689999999999999999998321 110 0 012444455667778
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHH-HHHHHc---CCCeEEEEEeeccCCC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTL---GVTKLLLVVNKMDDHT 235 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l-~~~~~~---~vp~~IvviNK~D~~~ 235 (514)
+..+.|+||||+++|...+...+..+|++|+|+|++.... |. ...+.+ .++... ++| +|+|+||+|+..
T Consensus 208 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~ 280 (329)
T 3o47_A 208 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---VN---EAREELMRMLAEDELRDAV-LLVFANKQDLPN 280 (329)
T ss_dssp TEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSS---HH---HHHHHHHHHHTCGGGTTCE-EEEEEECTTSTT
T ss_pred cEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHH---HH---HHHHHHHHHHhhhccCCCe-EEEEEECccCCc
Confidence 8999999999999998888888899999999999976421 11 222222 222222 677 999999999943
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. ..+++...+.... .. ...++++++||++|.|+.++++
T Consensus 281 ~~----~~~~i~~~~~~~~----~~-~~~~~~~~vSAk~g~gi~el~~ 319 (329)
T 3o47_A 281 AM----NAAEITDKLGLHS----LR-HRNWYIQATCATSGDGLYEGLD 319 (329)
T ss_dssp CC----CHHHHHHHHTCTT----CC-SSCEEEEECBTTTTBTHHHHHH
T ss_pred cc----CHHHHHHHhchhh----hh-cCCCEEEEEECCCCcCHHHHHH
Confidence 22 1223333322111 11 2357999999999999998644
No 135
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.68 E-value=5.5e-17 Score=151.67 Aligned_cols=155 Identities=17% Similarity=0.064 Sum_probs=96.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|.+|+|||||+++|+...-. .. .....+.+. .....+...
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~---------------------------~~~t~~~~~-~~~~~~~~~ 70 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFS--EG---------------------------YDPTVENTY-SKIVTLGKD 70 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCC--SC---------------------------CCCCSEEEE-EEEEC----
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCC--CC---------------------------CCCccceEE-EEEEEECCE
Confidence 456799999999999999999999542211 00 000011111 222233345
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~ 235 (514)
...+.|+||||+++|.......+..+|++|+|+|++.... + ......+..+.. .++| +|+|+||+|+..
T Consensus 71 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 143 (201)
T 3oes_A 71 EFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHS---F---QVIESLYQKLHEGHGKTRVP-VVLVGNKADLSP 143 (201)
T ss_dssp CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHH---H---HHHHHHHHHHHC-----CCC-EEEEEECTTCGG
T ss_pred EEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEECccCcc
Confidence 6789999999999998777777889999999999986421 1 122222333322 3678 999999999842
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. .... .+...+.+..+ ++++++||++|.|+.++++
T Consensus 144 ~~--~v~~----~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~ 179 (201)
T 3oes_A 144 ER--EVQA----VEGKKLAESWG------ATFMESSARENQLTQGIFT 179 (201)
T ss_dssp GC--CSCH----HHHHHHHHHHT------CEEEECCTTCHHHHHHHHH
T ss_pred cc--ccCH----HHHHHHHHHhC------CeEEEEeCCCCCCHHHHHH
Confidence 11 1111 11222333333 5899999999999998754
No 136
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.68 E-value=6.5e-17 Score=170.74 Aligned_cols=150 Identities=21% Similarity=0.269 Sum_probs=103.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
.++.++|+++|++|+|||||+|+|+.....+ .....|+|.+.....+++.
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~------------------------------v~~~~g~t~~~~~~~~~~~ 69 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISI------------------------------VEDTPGVTRDRIYSSAEWL 69 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------------------------------------CEEEECTTC
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcc------------------------------cCCCCCcceeEEEEEEEEC
Confidence 4567899999999999999999995322110 1223688888888888888
Q ss_pred CeEEEEEeCCC--------CcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeec
Q 010278 160 TTRFTILDAPG--------HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 231 (514)
Q Consensus 160 ~~~i~liDtPG--------h~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~ 231 (514)
+..+.|+|||| ++.|...+...+..+|++|+|+|+..+.. ....+.+.+++..+.| +|+|+||+
T Consensus 70 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~-------~~d~~l~~~l~~~~~p-vilV~NK~ 141 (456)
T 4dcu_A 70 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVT-------AADEEVAKILYRTKKP-VVLAVNKL 141 (456)
T ss_dssp SSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSC-------HHHHHHHHHHTTCCSC-EEEEEECC
T ss_pred CceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCC-------hHHHHHHHHHHHcCCC-EEEEEECc
Confidence 99999999999 77777778888899999999999998843 5677788888888988 99999999
Q ss_pred cCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 232 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 232 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|+... . ..... +..+|+. .++++||.+|.|+.++++
T Consensus 142 D~~~~--~--------~~~~e-~~~lg~~-----~~~~iSA~~g~gv~~L~~ 177 (456)
T 4dcu_A 142 DNTEM--R--------ANIYD-FYSLGFG-----EPYPISGTHGLGLGDLLD 177 (456)
T ss_dssp -------------------CC-SGGGSSS-----SEEECCTTTCTTHHHHHH
T ss_pred cchhh--h--------hhHHH-HHHcCCC-----ceEEeecccccchHHHHH
Confidence 98311 0 11112 2234442 457999999999998643
No 137
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=8.7e-17 Score=151.13 Aligned_cols=160 Identities=14% Similarity=0.102 Sum_probs=97.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
...++|+++|++|+|||||+++|+.... .... ....+.+.. ..+..++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~---------------------------~~t~~~~~~---~~~~~~~ 70 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEF--PEVY---------------------------VPTVFENYV---ADIEVDG 70 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSC--C----------------------------------CCEEE---EEEEETT
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCC--CCcC---------------------------CCcccceEE---EEEEECC
Confidence 4568999999999999999999954221 1000 000111111 1133343
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCC
Q 010278 161 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 161 --~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~vp~~IvviNK~D~~~~ 236 (514)
..+.|+||||+++|.......+..+|++|+|+|++.... ++ ......+..+... ++| +++|+||+|+...
T Consensus 71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~--~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 144 (207)
T 2fv8_A 71 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDS---LE--NIPEKWVPEVKHFCPNVP-IILVANKKDLRSD 144 (207)
T ss_dssp EEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHH---HH--HHHHTHHHHHHHHSTTCC-EEEEEECGGGGGC
T ss_pred EEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHHhCCCCC-EEEEEEchhhhcc
Confidence 578999999999998777777889999999999986421 00 1112333444444 788 9999999999432
Q ss_pred CchHHHHHHH------HhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEI------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i------~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
....+.+.+. ..+...+.+..++ .+++++||++|.|+.++++
T Consensus 145 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~el~~ 192 (207)
T 2fv8_A 145 EHVRTELARMKQEPVRTDDGRAMAVRIQA-----YDYLECSAKTKEGVREVFE 192 (207)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHHH
T ss_pred ccchhhhhhcccCCCCHHHHHHHHHhcCC-----CEEEEeeCCCCCCHHHHHH
Confidence 1111111110 0111222233322 3899999999999998644
No 138
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.68 E-value=1.4e-16 Score=147.90 Aligned_cols=158 Identities=13% Similarity=0.112 Sum_probs=98.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
..++.++|+++|++|+|||||+++|+... .... .....+.+.. ..+..
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~--~~~~---------------------------~~~t~~~~~~---~~~~~ 66 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGE--IPTA---------------------------YVPTVFENFS---HVMKY 66 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSC--CCSS---------------------------CCCCSEEEEE---EEEEE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCC--CCCc---------------------------cCCeeeeeeE---EEEEE
Confidence 34567999999999999999999995322 1100 0000111111 12333
Q ss_pred CC--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCC
Q 010278 159 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDH 234 (514)
Q Consensus 159 ~~--~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~vp~~IvviNK~D~~ 234 (514)
.+ ..+.|+||||+++|.......++.+|++|+|+|++.... +. ......+..+... ++| +|+|+||+|+.
T Consensus 67 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~--~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 140 (194)
T 3reg_A 67 KNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTS---FD--NISTKWEPEIKHYIDTAK-TVLVGLKVDLR 140 (194)
T ss_dssp TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH--HHHHTHHHHHHHHCTTSE-EEEEEECGGGC
T ss_pred CCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHH---HH--HHHHHHHHHHHHhCCCCC-EEEEEEChhhc
Confidence 33 557999999999998888888899999999999987522 10 0012223333333 567 99999999984
Q ss_pred CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 235 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
...... ...+++..+.+.+++. +++++||++|.|+.++++
T Consensus 141 ~~~~~~----~~~~~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~l~~ 180 (194)
T 3reg_A 141 KDGSDD----VTKQEGDDLCQKLGCV-----AYIEASSVAKIGLNEVFE 180 (194)
T ss_dssp CTTTTC----CCHHHHHHHHHHHTCS-----CEEECBTTTTBSHHHHHH
T ss_pred cCCCCc----ccHHHHHHHHHhcCCC-----EEEEeecCCCCCHHHHHH
Confidence 321111 1122333444555432 399999999999998644
No 139
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.68 E-value=6e-17 Score=153.24 Aligned_cols=154 Identities=15% Similarity=0.116 Sum_probs=95.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
....++|+++|++|+|||||+++|+... .... .....|.+.... .+...
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~---------------------------~~~t~~~~~~~~--~~~~~ 56 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGR--FEKN---------------------------YNATVGAVNHPV--TFLDD 56 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCS--TTCE---------------------------EETTTTEEEEEE--EEEBT
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCC--CCCC---------------------------CCCccceeeEEE--EEEeC
Confidence 3467899999999999999999984211 1000 001122222221 12221
Q ss_pred -C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccC
Q 010278 160 -T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDD 233 (514)
Q Consensus 160 -~--~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~ 233 (514)
+ ..+.|+||||+++|.......+..+|++|+|+|++.+... ....+.+..+.. .++| +++|+||+|+
T Consensus 57 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 129 (218)
T 4djt_A 57 QGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITC------QNLARWVKEFQAVVGNEAP-IVVCANKIDI 129 (218)
T ss_dssp TSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHH------HTHHHHHHHHHHHHCSSSC-EEEEEECTTC
T ss_pred CCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHH------HHHHHHHHHHHHhcCCCCC-EEEEEECCCC
Confidence 2 6799999999999877666777889999999999976431 112222233332 3678 9999999998
Q ss_pred CCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 234 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 234 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... .. ........+.+.. .++++++||++|.|+.++++
T Consensus 130 ~~~--~~----~~~~~~~~~~~~~------~~~~~~~Sa~~g~gv~~l~~ 167 (218)
T 4djt_A 130 KNR--QK----ISKKLVMEVLKGK------NYEYFEISAKTAHNFGLPFL 167 (218)
T ss_dssp C----------CCHHHHHHHTTTC------CCEEEEEBTTTTBTTTHHHH
T ss_pred ccc--cc----cCHHHHHHHHHHc------CCcEEEEecCCCCCHHHHHH
Confidence 321 11 1112222233332 46899999999999999755
No 140
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.67 E-value=9.2e-17 Score=150.19 Aligned_cols=156 Identities=17% Similarity=0.143 Sum_probs=75.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC-
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 159 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~- 159 (514)
.+.++|+++|++++|||||+++|+......... ....+..+.....+..+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~ 68 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKD-----------------------------YAMTSGVEVVVAPVTIPD 68 (208)
T ss_dssp EEEEEEEEC---------------------------------------------------------------CEEEECTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCC-----------------------------CCCccceEEEEEEEEECC
Confidence 456899999999999999999995431111100 00111112233344444
Q ss_pred ---CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH------cCCCeEEEEEee
Q 010278 160 ---TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNK 230 (514)
Q Consensus 160 ---~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~------~~vp~~IvviNK 230 (514)
...+.|+||||+++|...+...+..+|++|+|+|++.+.. + ......+..+.. .++| +++|+||
T Consensus 69 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~~~p-iilv~nK 141 (208)
T 2yc2_C 69 TTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMES---F---ESCKAWFELLKSARPDRERPLR-AVLVANK 141 (208)
T ss_dssp SSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHH---H---HHHHHHHHHHHHHCSCTTSCCE-EEEEEEC
T ss_pred cccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHH---H---HHHHHHHHHHHHhhcccccCCc-EEEEEEC
Confidence 4689999999999998888888889999999999987532 1 123334444443 3677 9999999
Q ss_pred ccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccc-ccccccccc
Q 010278 231 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM-GLNMKTRVD 283 (514)
Q Consensus 231 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~-G~gi~~l~~ 283 (514)
+|+... .... ..+++..+++.++ ++++++||++ |.|+.++++
T Consensus 142 ~Dl~~~-~~~v----~~~~~~~~~~~~~------~~~~~~Sa~~~~~gi~~l~~ 184 (208)
T 2yc2_C 142 TDLPPQ-RHQV----RLDMAQDWATTNT------LDFFDVSANPPGKDADAPFL 184 (208)
T ss_dssp C--------CC----CHHHHHHHHHHTT------CEEEECCC-------CHHHH
T ss_pred cccchh-hccC----CHHHHHHHHHHcC------CEEEEeccCCCCcCHHHHHH
Confidence 998430 0000 0122333444443 5899999999 999998754
No 141
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=150.11 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=84.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|.+|+|||||+++|+... ... .....+.......+..+
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~--~~~------------------------------~~~~t~~~~~~~~~~~~ 78 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGA--FPE------------------------------SYTPTVFERYMVNLQVK 78 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC---------------------------------------CCCCCEEEEEEEEET
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCC--CCC------------------------------CCCCccceeEEEEEEEC
Confidence 3567999999999999999999995321 000 00111111111223333
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHHc--CCCeEEEEEeeccCC
Q 010278 160 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDH 234 (514)
Q Consensus 160 ~--~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~-e~l~~~~~~--~vp~~IvviNK~D~~ 234 (514)
+ ..+.|+||||+++|...+...+..+|++|+|+|++.... ++ ... ..+..+... ++| +|+|+||+|+.
T Consensus 79 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 151 (214)
T 2j1l_A 79 GKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNS---FD---NIFNRWYPEVNHFCKKVP-IIVVGCKTDLR 151 (214)
T ss_dssp TEEEEEEEEEC---------------CEEEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCSSCC-EEEEEECGGGG
T ss_pred CEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEChhhh
Confidence 3 478999999999998887777889999999999987521 10 111 223333332 678 99999999994
Q ss_pred CCCchHHHHHHH---------HhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 235 TVNWSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 235 ~~~~~~~~~~~i---------~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... ...+.+ .++...+.+.+++ .+++++||++|.|+.++++
T Consensus 152 ~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~el~~ 201 (214)
T 2j1l_A 152 KDK---SLVNKLRRNGLEPVTYHRGQEMARSVGA-----VAYLECSARLHDNVHAVFQ 201 (214)
T ss_dssp SCH---HHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECBTTTTBSHHHHHH
T ss_pred ccc---hhhhhhcccccCcccHHHHHHHHHhcCC-----CEEEEecCCCCCCHHHHHH
Confidence 321 111111 1222334444432 3899999999999998644
No 142
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.66 E-value=8.2e-17 Score=147.25 Aligned_cols=158 Identities=16% Similarity=0.123 Sum_probs=92.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+.++|+++|++|+|||||+++|+.. ....... .. .+.... ....+....
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~--~~~~~~~-----------------~t----------~~~~~~-~~~~~~~~~ 55 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN--TFPTDYV-----------------PT----------VFDNFS-ANVVVNGAT 55 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS--CCC-------------------------------------CB-CCCC-----
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC--CCCCCCC-----------------Ce----------eeeeEE-EEEEECCEE
Confidence 45689999999999999999999532 2111000 00 000000 001122234
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHHc--CCCeEEEEEeeccCCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~-e~l~~~~~~--~vp~~IvviNK~D~~~~~ 237 (514)
..+.|+||||+++|...+...+..+|++|+|+|++.... + .... ..+..+... ++| +++++||+|+...
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~- 127 (182)
T 3bwd_D 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---Y---ENVSKKWIPELKHYAPGVP-IVLVGTKLDLRDD- 127 (182)
T ss_dssp --CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTC-
T ss_pred EEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEechhhhcC-
Confidence 567799999999998877778889999999999986521 0 0111 233334332 678 9999999998321
Q ss_pred chHHHHH-------HHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYD-------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~-------~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... .. -..++...+.+..++ .+++++||++|.|+.++++
T Consensus 128 -~~~-~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 173 (182)
T 3bwd_D 128 -KQF-FIDHPGAVPITTVQGEELKKLIGA-----PAYIECSSKSQENVKGVFD 173 (182)
T ss_dssp -HHH-HHHC--CCCCCHHHHHHHHHHHTC-----SEEEECCTTTCTTHHHHHH
T ss_pred -ccc-ccccccCCCCCHHHHHHHHHHcCC-----CEEEEEECCCCCCHHHHHH
Confidence 110 00 011223334444442 3899999999999998643
No 143
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.65 E-value=2.7e-16 Score=148.02 Aligned_cols=156 Identities=16% Similarity=0.130 Sum_probs=97.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC-
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 159 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~- 159 (514)
.+.++|+++|++++|||||+++|+.. ...... ....+... ...+..+
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~--~~~~~~---------------------------~~t~~~~~---~~~~~~~~ 54 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSN--KFPTDY---------------------------IPTVFDNF---SANVAVDG 54 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS--CCCSSC---------------------------CCSSCCCE---EEEEECSS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC--CCCccC---------------------------CCccceeE---EEEEEECC
Confidence 46789999999999999999999532 111000 00011111 1122233
Q ss_pred -CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHHc--CCCeEEEEEeeccCCC
Q 010278 160 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHT 235 (514)
Q Consensus 160 -~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~-e~l~~~~~~--~vp~~IvviNK~D~~~ 235 (514)
...+.|+||||+++|...+...+..+|++|+|+|+++... + .... ..+..+... ++| +|+|+||+|+..
T Consensus 55 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 127 (212)
T 2j0v_A 55 QIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKAS---Y---ENVLKKWMPELRRFAPNVP-IVLVGTKLDLRD 127 (212)
T ss_dssp CEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHCTTCC-EEEEEECHHHHT
T ss_pred EEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEeCHHhhh
Confidence 3689999999999998877777889999999999987521 1 0111 233344443 788 999999999832
Q ss_pred CCchHHHHHH-----HHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDE-----IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~-----i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. .. .... ...+...+.+.+++ .+++++||++|.|+.++++
T Consensus 128 ~--~~-~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~ 172 (212)
T 2j0v_A 128 D--KG-YLADHTNVITSTQGEELRKQIGA-----AAYIECSSKTQQNVKAVFD 172 (212)
T ss_dssp C--HH-HHHTCSSCCCHHHHHHHHHHHTC-----SEEEECCTTTCTTHHHHHH
T ss_pred C--cc-ccccccCCCCHHHHHHHHHHcCC-----ceEEEccCCCCCCHHHHHH
Confidence 1 11 0000 12233334444442 3899999999999998654
No 144
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.65 E-value=4.6e-16 Score=150.76 Aligned_cols=158 Identities=13% Similarity=0.110 Sum_probs=102.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|++|+|||||+|+|+........ ....|.|.......+.+.
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~-----------------------------~~~~~~T~~~~~~~~~~~ 68 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSR-----------------------------LGATSVTRACTTGSRRWD 68 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC--------------------------------------CCSCEEEEEEET
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCcccc-----------------------------CCCCCccccEEEEEEEEC
Confidence 346799999999999999999999654332111 011345666666677888
Q ss_pred CeEEEEEeCCCC--------cchHHHHHHhh----hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc------CC
Q 010278 160 TTRFTILDAPGH--------KSYVPNMISGA----SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL------GV 221 (514)
Q Consensus 160 ~~~i~liDtPGh--------~~f~~~~~~g~----~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~------~v 221 (514)
++.++|+||||. ..+...+.+.+ ..+|++|+|+|+.. . .......+..+... +.
T Consensus 69 ~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~-------~~~~~~~~~~l~~~~~~~~~~~ 140 (247)
T 3lxw_A 69 KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-F-------TAQDQQAVRQVRDMFGEDVLKW 140 (247)
T ss_dssp TEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-C-------CHHHHHHHHHHHHHHCGGGGGG
T ss_pred CcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-C-------CHHHHHHHHHHHHHhChhhhcc
Confidence 999999999997 66666666655 89999999999974 2 13555556666554 66
Q ss_pred CeEEEEEeeccCCCCCchHHHHHHH--HhhhhhhhhhccCcccCCeeEEeeccc-----cccccccccc
Q 010278 222 TKLLLVVNKMDDHTVNWSKERYDEI--ESKMTPFLKASGYNVKKDVQFLPISGL-----MGLNMKTRVD 283 (514)
Q Consensus 222 p~~IvviNK~D~~~~~~~~~~~~~i--~~~l~~~l~~~g~~~~~~~~iipiSa~-----~G~gi~~l~~ 283 (514)
| +|++.||+|+...+ .+.+-.- ...+..+++.+|. +++++++. .+.|+.+|++
T Consensus 141 ~-iilv~nK~Dl~~~~--~~~~l~~~~~~~l~~l~~~~g~------~~~~~~~~~~~~~~~~~v~~Ll~ 200 (247)
T 3lxw_A 141 M-VIVFTRKEDLAGGS--LHDYVSNTENRALRELVAECGG------RVCAFDNRATGREQEAQVEQLLG 200 (247)
T ss_dssp E-EEEEECGGGGTTCC--HHHHHHHCCCHHHHHHHHHTTT------CEEECCTTCCHHHHHHHHHHHHH
T ss_pred E-EEEEEchHhcCCCC--HHHHHhhcccHHHHHHHHHcCC------eEEEEeCCCCccccHHHHHHHHH
Confidence 7 89999999994322 1111111 0346666777664 34444433 3678887644
No 145
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.65 E-value=2.4e-16 Score=166.53 Aligned_cols=147 Identities=25% Similarity=0.296 Sum_probs=104.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
..++|+++|.+|+|||||+|+|+.....+ .....|.|.+.....+..++.
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~------------------------------vs~~~gTT~d~~~~~i~~~g~ 291 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAI------------------------------VTDIPGTTRDVISEEIVIRGI 291 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCC------------------------------CCCSSCCSSCSCCEEEEETTE
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCc------------------------------cCCCCCeeeeeEEEEEecCCe
Confidence 34799999999999999999996543221 112367788877778888899
Q ss_pred EEEEEeCCCCc-chH--------HHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010278 162 RFTILDAPGHK-SYV--------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 232 (514)
Q Consensus 162 ~i~liDtPGh~-~f~--------~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D 232 (514)
.+.|+||||++ ++. ..+...+..+|++|+|+|++.+.. .+..+.+..+ .+.| +|+|+||+|
T Consensus 292 ~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s-------~~~~~il~~l--~~~p-iivV~NK~D 361 (482)
T 1xzp_A 292 LFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLD-------EEDRKILERI--KNKR-YLVVINKVD 361 (482)
T ss_dssp EEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCC-------HHHHHHHHHH--TTSS-EEEEEEECS
T ss_pred EEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCC-------HHHHHHHHHh--cCCC-EEEEEECcc
Confidence 99999999998 652 445667889999999999987632 2334444333 3677 899999999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+... .+ .+++ ..++ ++ ..+++++||++|.|++++++
T Consensus 362 L~~~-~~---~~~~----~~~~---~~----~~~~i~iSAktg~Gi~eL~~ 397 (482)
T 1xzp_A 362 VVEK-IN---EEEI----KNKL---GT----DRHMVKISALKGEGLEKLEE 397 (482)
T ss_dssp SCCC-CC---HHHH----HHHH---TC----STTEEEEEGGGTCCHHHHHH
T ss_pred cccc-cC---HHHH----HHHh---cC----CCcEEEEECCCCCCHHHHHH
Confidence 9432 11 1122 2222 11 25799999999999998754
No 146
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.65 E-value=4.7e-16 Score=145.01 Aligned_cols=157 Identities=16% Similarity=0.128 Sum_probs=95.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|++|+|||||+++|+... ... .....+.+.-...+..+
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~------------------------------~~~~t~~~~~~~~~~~~ 64 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNG--YPT------------------------------EYIPTAFDNFSAVVSVD 64 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC----------------------------------------CCSSEEEEEEEEET
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCC--CCC------------------------------CCCCcccceeEEEEEEC
Confidence 4567899999999999999999995321 100 00111111112234444
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHHc--CCCeEEEEEeeccCC
Q 010278 160 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDH 234 (514)
Q Consensus 160 ~--~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~-e~l~~~~~~--~vp~~IvviNK~D~~ 234 (514)
+ ..+.|+||||+++|...+...+..+|++|+|+|++.... + .... ..+..+... ++| +++|+||+|+.
T Consensus 65 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 137 (201)
T 2q3h_A 65 GRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSS---F---QNVSEKWVPEIRCHCPKAP-IILVGTQSDLR 137 (201)
T ss_dssp TEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHCSSSC-EEEEEECGGGG
T ss_pred CEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEECHhhh
Confidence 4 467799999999987766667789999999999987521 0 0111 223333332 778 89999999984
Q ss_pred CCCchHHHHHHH---------HhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 235 TVNWSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 235 ~~~~~~~~~~~i---------~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... .....+ .++...+.+.+++ .+++++||++|.|+.++++
T Consensus 138 ~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~ 187 (201)
T 2q3h_A 138 EDV---KVLIELDKCKEKPVPEEAAKLLAEEIKA-----ASYIECSALTQKNLKEVFD 187 (201)
T ss_dssp GCH---HHHHHHHTTTCCCCCHHHHHHHHHHHTC-----SEEEECCTTTCTTHHHHHH
T ss_pred hch---hhhhhhcccccccCCHHHHHHHHHhcCC-----cEEEEEecCCCCCHHHHHH
Confidence 311 111110 1222333334332 3899999999999998654
No 147
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=1.4e-15 Score=141.32 Aligned_cols=153 Identities=18% Similarity=0.114 Sum_probs=93.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+.++|+++|++++|||||+++|+...- ... .....+... .....+....
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~--~~~---------------------------~~~t~~~~~-~~~~~~~~~~ 75 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRF--IWE---------------------------YDPTLESTY-RHQATIDDEV 75 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCC--CSC---------------------------CCTTCCEEE-EEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC--Ccc---------------------------cCCCCCceE-EEEEEECCEE
Confidence 4568999999999999999999954211 000 000011111 1112222234
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCC
Q 010278 161 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~~ 236 (514)
..+.|+||||+++ .......+..+|++|+|+|++.... + ....+.+..+.. .++| +++|+||+|+...
T Consensus 76 ~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~ 147 (196)
T 2atv_A 76 VSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGS---F---EEVLPLKNILDEIKKPKNVT-LILVGNKADLDHS 147 (196)
T ss_dssp EEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHHTTSCCC-EEEEEECGGGGGG
T ss_pred EEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhhCCCCCc-EEEEEECcccccc
Confidence 6799999999988 5555566789999999999987421 1 122233333322 4778 9999999998431
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccc-ccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~-gi~~l~~ 283 (514)
.+... .+...+.+..+ ++++++||++|. |+.++++
T Consensus 148 --~~v~~----~~~~~~~~~~~------~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 148 --RQVST----EEGEKLATELA------CAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp --CCSCH----HHHHHHHHHHT------SEEEECCTTTCTTCHHHHHH
T ss_pred --cccCH----HHHHHHHHHhC------CeEEEECCCcCCcCHHHHHH
Confidence 11111 11222333333 589999999999 9998654
No 148
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.64 E-value=5.6e-16 Score=146.61 Aligned_cols=164 Identities=13% Similarity=0.048 Sum_probs=98.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
...+.++|+++|..++|||||+++|+... ..... ....+.+. .....+..
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~--~~~~~---------------------------~~t~~~~~-~~~~~~~~ 72 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDC--YPETY---------------------------VPTVFENY-TACLETEE 72 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSC--CCSSC---------------------------CCCSEEEE-EEEEEC--
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCC--CCCCc---------------------------CCeeeeeE-EEEEEECC
Confidence 34567899999999999999999995321 11000 00011111 11122333
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCC
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~vp~~IvviNK~D~~~~ 236 (514)
....+.|+||||+++|.......++.+|++|+|+|++.... +. ......+..+... ++| +++|.||+|+...
T Consensus 73 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~--~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~ 146 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPET---VD--SALKKWRTEILDYCPSTR-VLLIGCKTDLRTD 146 (214)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHH---HH--HHHTHHHHHHHHHCTTSE-EEEEEECGGGGGC
T ss_pred EEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHH---HH--HHHHHHHHHHHHhCCCCC-EEEEEEChhhccc
Confidence 45789999999999998777777889999999999987532 10 0012333444443 677 8999999998421
Q ss_pred CchHHH------HHHHHhhhhhhhhhccCcccCCeeEEeeccccccc-cccccc
Q 010278 237 NWSKER------YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTRVD 283 (514)
Q Consensus 237 ~~~~~~------~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~g-i~~l~~ 283 (514)
...... .....++...+.+.+++ .+++++||++|.| +.++++
T Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~SA~~g~g~v~~lf~ 195 (214)
T 3q3j_B 147 LSTLMELSHQKQAPISYEQGCAIAKQLGA-----EIYLEGSAFTSEKSIHSIFR 195 (214)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHTC-----SEEEECCTTTCHHHHHHHHH
T ss_pred hhhhhhhcccccCccCHHHHHHHHHHcCC-----CEEEEeccCCCcccHHHHHH
Confidence 000000 00011223334444443 2899999999998 998654
No 149
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.63 E-value=9.2e-16 Score=141.22 Aligned_cols=155 Identities=21% Similarity=0.299 Sum_probs=92.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEE
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 163 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i 163 (514)
++|+++|++|+|||||+++|+... .. .....|+|.......+ . .+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~--~~-----------------------------~~~~~~~t~~~~~~~~--~--~~ 46 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK--VR-----------------------------RGKRPGVTRKIIEIEW--K--NH 46 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC--CS-----------------------------SSSSTTCTTSCEEEEE--T--TE
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC--Cc-----------------------------cCCCCCccceeEEEec--C--CE
Confidence 589999999999999999995321 10 1112344443333322 2 78
Q ss_pred EEEeCCC-----------CcchHHH---HHHh-hhhcCEEEEEEECCCCccc-ccc---cCCcchHHHHHHHHHcCCCeE
Q 010278 164 TILDAPG-----------HKSYVPN---MISG-ASQADIGVLVISARKGEFE-TGF---EKGGQTREHVMLAKTLGVTKL 224 (514)
Q Consensus 164 ~liDtPG-----------h~~f~~~---~~~g-~~~~D~ailVVda~~g~~e-~~~---~~~~qt~e~l~~~~~~~vp~~ 224 (514)
.|+|||| ++.|... ..+. +..+++++.|+|+.....- ..+ ....++.+.+..+...++| +
T Consensus 47 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-i 125 (190)
T 2cxx_A 47 KIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP-T 125 (190)
T ss_dssp EEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC-E
T ss_pred EEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc-e
Confidence 9999999 4455333 3333 5667888899997642100 000 0012344455666667899 9
Q ss_pred EEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcc-cCCeeEEeeccccccccccccc
Q 010278 225 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 225 IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~-~~~~~iipiSa~~G~gi~~l~~ 283 (514)
++|+||+|+... ..+..+ .+.+.+++.. ....+++++||++|.|+.++++
T Consensus 126 ilv~nK~Dl~~~--~~~~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 176 (190)
T 2cxx_A 126 IVAVNKLDKIKN--VQEVIN-------FLAEKFEVPLSEIDKVFIPISAKFGDNIERLKN 176 (190)
T ss_dssp EEEEECGGGCSC--HHHHHH-------HHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHH
T ss_pred EEEeehHhccCc--HHHHHH-------HHHHHhhhhhhccCCcEEEEecCCCCCHHHHHH
Confidence 999999999432 222222 2333333210 0024689999999999998654
No 150
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.63 E-value=1.6e-15 Score=139.47 Aligned_cols=159 Identities=13% Similarity=0.117 Sum_probs=96.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
+.+.++|+++|++++|||||+++|+... .... .....+.... ....+...
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~--~~~~---------------------------~~~t~~~~~~-~~~~~~~~ 53 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDC--FPEN---------------------------YVPTVFENYT-ASFEIDTQ 53 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSC--CCSS---------------------------CCCCSEEEEE-EEEECSSC
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCC--CCCC---------------------------CCCccceeEE-EEEEECCE
Confidence 3467899999999999999999995421 1000 0000111111 11122223
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcch-HHHHHHHHH--cCCCeEEEEEeeccCCCC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt-~e~l~~~~~--~~vp~~IvviNK~D~~~~ 236 (514)
...+.|+||||+++|...+...+..+|++|+|+|++.... ++ .. ...+..+.. .++| +|+|.||+|+...
T Consensus 54 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~ 126 (184)
T 1m7b_A 54 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---LD---SVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTD 126 (184)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTCE-EEEEEECGGGGGC
T ss_pred EEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHHHCCCCC-EEEEEEcchhhcc
Confidence 4678999999999997776667789999999999986421 00 11 122233333 2677 9999999999421
Q ss_pred CchHHHHHHH---------HhhhhhhhhhccCcccCCeeEEeeccc-cccccccccc
Q 010278 237 NWSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGL-MGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i---------~~~l~~~l~~~g~~~~~~~~iipiSa~-~G~gi~~l~~ 283 (514)
.....++ .++...+.+.++ .++++++||+ +|.|+.++++
T Consensus 127 ---~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~gi~~l~~ 175 (184)
T 1m7b_A 127 ---VSTLVELSNHRQTPVSYDQGANMAKQIG-----AATYIECSALQSENSVRDIFH 175 (184)
T ss_dssp ---HHHHHHHHTTTCCCCCHHHHHHHHHHHT-----CSEEEECBTTTBHHHHHHHHH
T ss_pred ---hhhHhhhhhcccCCCCHHHHHHHHHHcC-----CcEEEEeeecCCCcCHHHHHH
Confidence 1111111 122333444443 2589999999 6999998644
No 151
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.63 E-value=1.4e-17 Score=155.43 Aligned_cols=153 Identities=20% Similarity=0.160 Sum_probs=92.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
....++|+++|++|+|||||+++|+.. ... ......++.+.....+..+
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 78 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADD--TYT-----------------------------ESYISTIGVDFKIRTIELD 78 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCC--CCC-----------------------------CHHHHHHCCSEEEEEEEET
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcC--CCC-----------------------------CCcCCcccceEEEEEEEEC
Confidence 346799999999999999999988421 111 1111233333333444455
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCC
Q 010278 160 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDH 234 (514)
Q Consensus 160 ~--~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~vp~~IvviNK~D~~ 234 (514)
+ ..+.|+||||+++|...+...+..+|++|+|+|+++... + ......+..+... ++| +|+|+||+|+.
T Consensus 79 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~ 151 (199)
T 3l0i_B 79 GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---F---NNVKQWLQEIDRYASENVN-KLLVGNKCDLT 151 (199)
T ss_dssp TEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHH---H---HHHHHHHHHHHSCC-CCSE-EEEC-CCSSCC
T ss_pred CEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhccCCCC-EEEEEECccCC
Confidence 5 679999999999997777777889999999999987532 1 1223333334333 567 89999999984
Q ss_pred CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 235 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
... .. ...+...+.+.+ .++++++||++|.|+.+++
T Consensus 152 ~~~--~v----~~~~~~~~~~~~------~~~~~~vSA~~g~gv~~l~ 187 (199)
T 3l0i_B 152 TKK--VV----DYTTAKEFADSL------GIPFLETSAKNATNVEQSF 187 (199)
T ss_dssp --C--CC----CSCC-CHHHHTT------TCCBCCCCC---HHHHHHH
T ss_pred ccc--cC----CHHHHHHHHHHc------CCeEEEEECCCCCCHHHHH
Confidence 221 00 001223333333 3579999999999999853
No 152
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.62 E-value=4e-16 Score=164.12 Aligned_cols=146 Identities=19% Similarity=0.189 Sum_probs=93.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
..++|+++|++|+|||||+|+|+.....+.. ...|.|.+.....+..++.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~------------------------------~~~gtT~d~~~~~i~~~g~ 272 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVT------------------------------DLPGTTRDVVESQLVVGGI 272 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCS------------------------------CCTTCCHHHHHHEEEETTE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCccccc------------------------------CCCCeeEEEEEEEEEECCE
Confidence 4578999999999999999999765432211 1245666665566777899
Q ss_pred EEEEEeCCCCcchHH--------HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 162 RFTILDAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 162 ~i~liDtPGh~~f~~--------~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
.+.|+||||++++.. .+...+..+|++|+|+|++.+.. .+..+.+..+. ..| +|+|+||+|+
T Consensus 273 ~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~-------~~~~~i~~~l~--~~p-iivV~NK~Dl 342 (462)
T 3geh_A 273 PVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWT-------TGDQEIYEQVK--HRP-LILVMNKIDL 342 (462)
T ss_dssp EEEECC--------------------CCCCSCSEEEEEEETTTCSC-------HHHHHHHHHHT--TSC-EEEEEECTTS
T ss_pred EEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCC-------HHHHHHHHhcc--CCc-EEEEEECCCC
Confidence 999999999877632 23334678999999999998732 23344443332 356 8999999999
Q ss_pred CCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 234 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 234 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.... . . ..+ +.+. ...+++++||++|.|++++++
T Consensus 343 ~~~~--~--~----~~~----~~~~----~~~~~i~iSAktg~Gi~eL~~ 376 (462)
T 3geh_A 343 VEKQ--L--I----TSL----EYPE----NITQIVHTAAAQKQGIDSLET 376 (462)
T ss_dssp SCGG--G--S----TTC----CCCT----TCCCEEEEBTTTTBSHHHHHH
T ss_pred Ccch--h--h----HHH----HHhc----cCCcEEEEECCCCCCHHHHHH
Confidence 4321 1 0 011 1111 146899999999999998654
No 153
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.42 E-value=3e-17 Score=153.73 Aligned_cols=160 Identities=17% Similarity=0.148 Sum_probs=98.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeee--EEEE
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR--AHFE 157 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~--~~~~ 157 (514)
.++.++|+++|++|+|||||+++|+... ..... ...+.+... ..+.
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~------------------------------~~t~~~~~~~~~~~~ 74 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNA--FPGEY------------------------------IPTVFDNYSANVMVD 74 (204)
Confidence 4567999999999999999999985321 11000 000101101 1122
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHHc--CCCeEEEEEeeccCC
Q 010278 158 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDH 234 (514)
Q Consensus 158 ~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~-e~l~~~~~~--~vp~~IvviNK~D~~ 234 (514)
.....+.|+||||+++|.......+..+|++|+|+|++.+.. ++ ... ..+..+... ++| +++|+||+|+.
T Consensus 75 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~~---~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~ 147 (204)
T 3th5_A 75 GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS---FE---NVRAKWYPEVRHHCPNTP-IILVGTKLDLR 147 (204)
Confidence 234567799999999998888778889999999999987532 11 121 233333333 677 89999999994
Q ss_pred CCCchHHHH------HHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 235 TVNWSKERY------DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 235 ~~~~~~~~~------~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
......+.+ .....+...+.+..++ .+++++||++|.|+.++++
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~vSA~~g~gi~~l~~ 197 (204)
T 3th5_A 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTVFD 197 (204)
Confidence 321100000 0111222333333322 3799999999999998754
No 154
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.62 E-value=1.6e-15 Score=161.90 Aligned_cols=154 Identities=14% Similarity=0.151 Sum_probs=103.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
.++.++|+++|.+|+|||||+++|+... ... ...|+......+...
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~--~~~--------------------------------~~~T~~~~~~~~~~~ 364 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQ--SVT--------------------------------TIPTVGFNVETVTYK 364 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSS--CCC--------------------------------CCCCSSEEEEEEESS
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCC--CCC--------------------------------cCCccceeEEEEEeC
Confidence 3467899999999999999999995422 100 112334444557778
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~~~ 235 (514)
+..+.|+||||+++|...+...+..+|++|+|+|++.... |+ ...+.+..+.. .++| +|+|+||+|+..
T Consensus 365 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 365 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR---ID---EARQELHRIINDREMRDAI-ILIFANKQDLPD 437 (497)
T ss_dssp SCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGG---HH---HHHHHHHHHHTSGGGTTCE-EEEEEECCSSSS
T ss_pred CEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhH---HH---HHHHHHHHHhhhhhcCCCc-EEEEEECCCCCc
Confidence 8999999999999998888888899999999999987521 11 12222222222 3677 999999999943
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. + .+++...+...+. ....++++++||++|.|+.++++
T Consensus 438 ~~-~---~~~~~~~~~~~~~-----~~~~~~~~~~SA~~g~gi~~l~~ 476 (497)
T 3lvq_E 438 AM-K---PHEIQEKLGLTRI-----RDRNWYVQPSCATSGDGLYEGLT 476 (497)
T ss_dssp CC-C---HHHHHHHTTCTTC-----CSSCEEEEECBTTTTBTHHHHHH
T ss_pred CC-C---HHHHHHHhchhhh-----hcCCeEEEEEECCCCCCHHHHHH
Confidence 21 1 2223332221110 12357899999999999998654
No 155
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.62 E-value=4.1e-15 Score=138.53 Aligned_cols=154 Identities=14% Similarity=0.141 Sum_probs=93.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
....++|+++|.+|+|||||+++|........ ...+++.+.....+..+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 68 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSA-------------------------------HEPENPEDTYERRIMVD 68 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGG-------------------------------GTTTSCTTEEEEEEEET
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCcc-------------------------------CCCCcccceEEEEEEEC
Confidence 44668999999999999999999842221110 00112222222223344
Q ss_pred C--eEEEEEeCCCCcchHH-HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeecc
Q 010278 160 T--TRFTILDAPGHKSYVP-NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMD 232 (514)
Q Consensus 160 ~--~~i~liDtPGh~~f~~-~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D 232 (514)
+ ..+.|+||||+++|.. .....++.+|++|+|+|++.... |+ ...+.+..+.. .++| +|+|.||+|
T Consensus 69 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~D 141 (195)
T 3cbq_A 69 KEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRS---FS---KVPETLLRLRAGRPHHDLP-VILVGNKSD 141 (195)
T ss_dssp TEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSTTSCCC-EEEEEECTT
T ss_pred CEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEeechh
Confidence 4 4678899999988754 33344678999999999986421 11 22333333333 3678 999999999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+.... ....+ +...+.+..+ ++++++||++|.|+.++++
T Consensus 142 l~~~~--~v~~~----~~~~~a~~~~------~~~~e~Sa~~~~~v~~lf~ 180 (195)
T 3cbq_A 142 LARSR--EVSLE----EGRHLAGTLS------CKHIETSAALHHNTRELFE 180 (195)
T ss_dssp CTTTC--CSCHH----HHHHHHHHTT------CEEEEEBTTTTBSHHHHHH
T ss_pred ccccC--CcCHH----HHHHHHHHhC------CEEEEEcCCCCCCHHHHHH
Confidence 94211 11111 1222333332 5799999999999998644
No 156
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.61 E-value=1.7e-15 Score=143.72 Aligned_cols=154 Identities=20% Similarity=0.241 Sum_probs=96.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe-
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 158 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~- 158 (514)
+.+...|+++|..++|||||+++++. +..... ....+..+.....+..
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~--~~f~~~-----------------------------~~~Tig~d~~~k~~~~~ 58 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMY--DSFDNT-----------------------------YQATIGIDFLSKTMYLE 58 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHH--SCCC---------------------------------------CEEEEEECS
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHh--CCCCCC-----------------------------cCCccceEEEEEEEEec
Confidence 34568999999999999999999843 322111 0011111222222333
Q ss_pred -CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCC
Q 010278 159 -ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDH 234 (514)
Q Consensus 159 -~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~ 234 (514)
....+.||||+|+++|...+-...+.+|++|+|.|.+.... |+ .....+..++. .++| +|+|.||+|+.
T Consensus 59 ~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~S---f~---~i~~~~~~i~~~~~~~~p-iilVgNK~Dl~ 131 (216)
T 4dkx_A 59 DRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNS---FQ---QTTKWIDDVRTERGSDVI-IMLVGNKTDLA 131 (216)
T ss_dssp SCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHTTSSE-EEEEEECTTCG
T ss_pred ceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHH---HH---HHHHHHHHHHHhcCCCCe-EEEEeeccchH
Confidence 34678899999999998877777899999999999887432 21 23333333332 3577 89999999983
Q ss_pred CCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 235 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 235 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. ..... ++...+.++++ ++++.+||++|.||.++++
T Consensus 132 ~~--r~V~~----~e~~~~a~~~~------~~~~e~SAktg~nV~e~F~ 168 (216)
T 4dkx_A 132 DK--RQVSI----EEGERKAKELN------VMFIETSAKAGYNVKQLFR 168 (216)
T ss_dssp GG--CCSCH----HHHHHHHHHHT------CEEEEEBTTTTBSHHHHHH
T ss_pred hc--CcccH----HHHhhHHHHhC------CeeEEEeCCCCcCHHHHHH
Confidence 21 11111 22333444443 5799999999999999754
No 157
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.61 E-value=5.3e-15 Score=136.42 Aligned_cols=151 Identities=17% Similarity=0.121 Sum_probs=94.2
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
...+.++|+++|..|+|||||+++|+.. ..... ..+ .+... ...+..
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~--~~~~~------------------------~~~----t~~~~---~~~~~~ 62 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTG--TYVQE------------------------ESP----EGGRF---KKEIVV 62 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHS--SCCCC------------------------CCT----TCEEE---EEEEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcC--CCCCC------------------------cCC----CcceE---EEEEEE
Confidence 3557799999999999999999998532 11100 000 01111 123344
Q ss_pred CC--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeecc
Q 010278 159 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMD 232 (514)
Q Consensus 159 ~~--~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D 232 (514)
++ ..+.|+||||+++|. .++.+|++|+|+|+++... |+ .....+..+.. .++| ++++.||+|
T Consensus 63 ~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~D 130 (184)
T 3ihw_A 63 DGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEIS---FQ---TVYNYFLRLCSFRNASEVP-MVLVGTQDA 130 (184)
T ss_dssp TTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHTTSCGGGSC-EEEEEECTT
T ss_pred CCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECcc
Confidence 44 567889999999987 4567999999999987531 11 12333333433 3577 899999999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+...+...... ++...+.+.++ .++++++||++|.|+.++++
T Consensus 131 l~~~~~~~v~~----~~~~~~~~~~~-----~~~~~e~Sa~~~~gv~~lf~ 172 (184)
T 3ihw_A 131 ISAANPRVIDD----SRARKLSTDLK-----RCTYYETCATYGLNVERVFQ 172 (184)
T ss_dssp CBTTBCCCSCH----HHHHHHHHHTT-----TCEEEEEBTTTTBTHHHHHH
T ss_pred cccccccccCH----HHHHHHHHHcC-----CCeEEEecCCCCCCHHHHHH
Confidence 83211111111 22233344433 25899999999999998654
No 158
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.61 E-value=6.5e-15 Score=134.24 Aligned_cols=149 Identities=15% Similarity=0.111 Sum_probs=89.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+..+|+++|.+++|||||+++|.... ... .....|... ...+..++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~--~~~----------------------------~~~t~~~~~---~~~~~~~~ 51 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGS--YQV----------------------------LEKTESEQY---KKEMLVDG 51 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSC--CCC----------------------------CSSCSSSEE---EEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC--CCC----------------------------cCCCcceeE---EEEEEECC
Confidence 467899999999999999999995421 110 000011111 12233333
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH------cCCCeEEEEEeecc
Q 010278 161 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMD 232 (514)
Q Consensus 161 --~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~------~~vp~~IvviNK~D 232 (514)
..+.|+||||++++ ..++.+|++|+|+|++.... ++ .....+..+.. .++| +++|.||+|
T Consensus 52 ~~~~l~i~Dt~G~~~~-----~~~~~~d~~ilv~D~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~p-iilv~nK~D 119 (178)
T 2iwr_A 52 QTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDENS---FQ---AVSRLHGQLSSLRGEGRGGLA-LALVGTQDR 119 (178)
T ss_dssp EEEEEEEEECSSSCCH-----HHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHCSSSCCCE-EEEEEECTT
T ss_pred EEEEEEEEECCCCchh-----HHHHhCCEEEEEEECcCHHH---HH---HHHHHHHHHHHHHhcCCCCCC-EEEEEECcc
Confidence 56899999999873 23567999999999987521 10 11222112222 2567 999999999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+.......... +++..+.+..+ .++++++||++|.|+.++++
T Consensus 120 l~~~~~~~v~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~lf~ 161 (178)
T 2iwr_A 120 ISASSPRVVGD----ARARALXADMK-----RCSYYETXATYGLNVDRVFQ 161 (178)
T ss_dssp CBTTBCCCSCH----HHHHHHHHHHS-----SEEEEEEBTTTTBTHHHHHH
T ss_pred ccccccCcCCH----HHHHHHHHhhc-----CCeEEEEeccccCCHHHHHH
Confidence 83111001111 12222333322 36899999999999998654
No 159
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.61 E-value=2.4e-15 Score=147.99 Aligned_cols=160 Identities=14% Similarity=0.190 Sum_probs=87.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC-
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 160 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~- 160 (514)
..++|+++|++|+|||||+|+|+.......... + .......+++++.....+..++
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~-----------~------------~~~~~~~t~~~~~~~~~~~~~~~ 63 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYP-----------G------------PSHRIKKTVQVEQSKVLIKEGGV 63 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC--------------------------------------CCCEEEEEEECC--C
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCC-----------C------------cccccCCceEEEEEEEEEecCCe
Confidence 358999999999999999999853221110000 0 0000123344444444555544
Q ss_pred -eEEEEEeCCCCcch-------HH----------HHHHh----------hhhcCEEEEEEECCC-CcccccccCCcchHH
Q 010278 161 -TRFTILDAPGHKSY-------VP----------NMISG----------ASQADIGVLVISARK-GEFETGFEKGGQTRE 211 (514)
Q Consensus 161 -~~i~liDtPGh~~f-------~~----------~~~~g----------~~~~D~ailVVda~~-g~~e~~~~~~~qt~e 211 (514)
..++|+||||+.++ .. ..+.. -..+|+++++|+... +. .....+
T Consensus 64 ~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~-------~~~d~~ 136 (274)
T 3t5d_A 64 QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGL-------KPLDIE 136 (274)
T ss_dssp CEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSC-------CHHHHH
T ss_pred EEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCC-------CHHHHH
Confidence 48999999998322 11 11111 013789999997654 42 245666
Q ss_pred HHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 212 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 212 ~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.+..+.. ++| +|+|+||+|+. ........++.+...+...+ ++++++||.+|.|+.++.+
T Consensus 137 ~l~~l~~-~~p-vi~V~nK~D~~----~~~e~~~~~~~i~~~l~~~~------i~v~~~sa~~~~~~~~l~~ 196 (274)
T 3t5d_A 137 FMKRLHE-KVN-IIPLIAKADTL----TPEECQQFKKQIMKEIQEHK------IKIYEFPETDDEEENKLVK 196 (274)
T ss_dssp HHHHHTT-TSC-EEEEESSGGGS----CHHHHHHHHHHHHHHHHHTT------CCCCCC-----------CH
T ss_pred HHHHHhc-cCC-EEEEEeccCCC----CHHHHHHHHHHHHHHHHHcC------CeEEcCCCCCChhHHHHHH
Confidence 6666655 788 99999999983 23455566666666666544 5789999999999988643
No 160
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.61 E-value=3e-15 Score=138.35 Aligned_cols=154 Identities=15% Similarity=0.126 Sum_probs=91.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|.+++|||||+++|+... .... . ....+.+.. ....+...
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~--~~~~------------------------~---~~t~~~~~~-~~~~~~~~ 67 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKR--FISE------------------------Y---DPNLEDTYS-SEETVDHQ 67 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSS--CCSC------------------------C---CTTCCEEEE-EEEEETTE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCC--CCcc------------------------c---CCCccceee-EEEEECCE
Confidence 4567999999999999999999995422 1100 0 000121111 11222223
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH------cCCCeEEEEEeeccC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDD 233 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~------~~vp~~IvviNK~D~ 233 (514)
...+.|+||||+++|... ...++.+|++|+|+|++.... ++ .....+..+.. .++| +|+|.||+|+
T Consensus 68 ~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl 139 (187)
T 3c5c_A 68 PVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQS---FD---SSSSYLELLALHAKETQRSIP-ALLLGNKLDM 139 (187)
T ss_dssp EEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHHHHCCCCC-EEEEEECGGG
T ss_pred EEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhhccCCCCC-EEEEEECcch
Confidence 467889999999888552 456778999999999986421 11 22233333333 3788 9999999998
Q ss_pred CCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecc-ccccccccccc
Q 010278 234 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISG-LMGLNMKTRVD 283 (514)
Q Consensus 234 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa-~~G~gi~~l~~ 283 (514)
... .+... ++...+.+..+ ++++++|| ++|.|+.++++
T Consensus 140 ~~~--~~v~~----~~~~~~~~~~~------~~~~e~Sa~~~g~gv~~lf~ 178 (187)
T 3c5c_A 140 AQY--RQVTK----AEGVALAGRFG------CLFFEVSACLDFEHVQHVFH 178 (187)
T ss_dssp GGG--CSSCH----HHHHHHHHHHT------CEEEECCSSSCSHHHHHHHH
T ss_pred hhc--CccCH----HHHHHHHHHcC------CcEEEEeecCccccHHHHHH
Confidence 321 11111 22233344443 57999999 89999998644
No 161
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.59 E-value=5.7e-15 Score=150.89 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=96.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeE
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 162 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~ 162 (514)
.+.|+++|.+|+|||||+++|...... .....+.|.+.....+.+++..
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~-------------------------------~~~~~~~T~d~~~~~i~~~g~~ 227 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQK-------------------------------VDTKLFTTMSPKRYAIPINNRK 227 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC------------------------------------------CCSCEEEEEETTEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCcc-------------------------------ccCCcccccCCEEEEEEECCEE
Confidence 446999999999999999999432110 1122456666666667778889
Q ss_pred EEEEeCCCCcch--------HHHHHHhhhhcCEEEEEEECCCCc--ccccccCCcchHHHHHHHHH---cCCCeEEEEEe
Q 010278 163 FTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGE--FETGFEKGGQTREHVMLAKT---LGVTKLLLVVN 229 (514)
Q Consensus 163 i~liDtPGh~~f--------~~~~~~g~~~~D~ailVVda~~g~--~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviN 229 (514)
+.++||||+... .+.+...+..+|++++|+|++++. .+ .+......++.. .+.| +|+|.|
T Consensus 228 v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~------~~~~~~~~~L~~l~~~~~p-~ilV~N 300 (364)
T 2qtf_A 228 IMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLI------ETLQSSFEILREIGVSGKP-ILVTLN 300 (364)
T ss_dssp EEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHH------HHHHHHHHHHHHHTCCSCC-EEEEEE
T ss_pred EEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHH------HHHHHHHHHHHHhCcCCCC-EEEEEE
Confidence 999999997221 234455678999999999998763 11 122222334444 3567 899999
Q ss_pred eccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 230 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 230 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|+|+.... . ......+..+...++. ...+++|+||++|.|+.++.+
T Consensus 301 K~Dl~~~~--~---~~~~~~~~~l~~~l~~---~~~~~~~~SA~~g~gi~~L~~ 346 (364)
T 2qtf_A 301 KIDKINGD--L---YKKLDLVEKLSKELYS---PIFDVIPISALKRTNLELLRD 346 (364)
T ss_dssp CGGGCCSC--H---HHHHHHHHHHHHHHCS---CEEEEEECBTTTTBSHHHHHH
T ss_pred CCCCCCch--H---HHHHHHHHHHHHHhcC---CCCcEEEEECCCCcCHHHHHH
Confidence 99994321 1 1112222222233211 135789999999999998644
No 162
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.59 E-value=2.7e-15 Score=141.02 Aligned_cols=159 Identities=13% Similarity=0.106 Sum_probs=96.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
....++|+++|.+|+|||||+++|....- ... .....+.+. .....+...
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~--~~~---------------------------~~~t~~~~~-~~~~~~~~~ 74 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCF--PEN---------------------------YVPTVFENY-TASFEIDTQ 74 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCC--CSS---------------------------CCCCSEEEE-EEEEESSSS
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCC--CCC---------------------------cCCccceeE-EEEEEECCE
Confidence 34678999999999999999999954211 000 000011111 011122223
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcch-HHHHHHHHH--cCCCeEEEEEeeccCCCC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt-~e~l~~~~~--~~vp~~IvviNK~D~~~~ 236 (514)
...+.|+||||+++|.......+..+|++|+|+|++.... |. .. ...+..+.. .++| +|+|.||+|+...
T Consensus 75 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~ 147 (205)
T 1gwn_A 75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---LD---SVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTD 147 (205)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTCE-EEEEEECGGGGGC
T ss_pred EEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHHCCCCC-EEEEEechhhccc
Confidence 4679999999999997766667789999999999986421 10 11 122233333 2567 9999999998421
Q ss_pred CchHHHHHHH---------HhhhhhhhhhccCcccCCeeEEeeccc-cccccccccc
Q 010278 237 NWSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGL-MGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i---------~~~l~~~l~~~g~~~~~~~~iipiSa~-~G~gi~~l~~ 283 (514)
.....++ .++...+.+.++ .++++++||+ +|.|+.++++
T Consensus 148 ---~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~SAk~~~~gv~~lf~ 196 (205)
T 1gwn_A 148 ---VSTLVELSNHRQTPVSYDQGANMAKQIG-----AATYIECSALQSENSVRDIFH 196 (205)
T ss_dssp ---HHHHHHHHTTTCCCCCHHHHHHHHHHHT-----CSEEEECCTTTCHHHHHHHHH
T ss_pred ---hhhhhhhcccccCCCCHHHHHHHHHHcC-----CCEEEEeeeccCCcCHHHHHH
Confidence 1111111 122333444443 2589999999 6899998644
No 163
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.58 E-value=3.7e-15 Score=149.88 Aligned_cols=159 Identities=18% Similarity=0.159 Sum_probs=98.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
...++|+++|.+|+|||||+++|... .+.. ...+.+.+.....+..++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~--~~~~------------------------------~~~~t~~~~~~~~~~~~~ 200 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTN--AFPG------------------------------EYIPTVFDNYSANVMVDG 200 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHS--CCCC------------------------------SCCCCSEEEEEEEEEETT
T ss_pred cceeEEEEECCCCCChHHHHHHHHhC--CCCc------------------------------ccCCcccceeEEEEEECC
Confidence 45689999999999999999998532 1110 011222222223344444
Q ss_pred e--EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHHc--CCCeEEEEEeeccCCC
Q 010278 161 T--RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHT 235 (514)
Q Consensus 161 ~--~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~-e~l~~~~~~--~vp~~IvviNK~D~~~ 235 (514)
. .+.|+||||+++|.......+..+|++|+|+|++.... +. ... ..+..+... ++| +++|+||+|+..
T Consensus 201 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 201 KPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPAS---FH---HVRAKWYPEVRHHCPNTP-IILVGTKLDLRD 273 (332)
T ss_dssp EEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTSC-EEEEEECHHHHT
T ss_pred EEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhhCCCCc-EEEEEEchhccc
Confidence 4 45699999999998777777889999999999987531 00 111 222334443 778 999999999843
Q ss_pred CCchHHHHHH------HHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~------i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.......+.. ...+...+.+..++ .+++++||++|.|+.++++
T Consensus 274 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 322 (332)
T 2wkq_A 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTVFD 322 (332)
T ss_dssp CHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHHH
T ss_pred ccchhhhccccccccccHHHHHHHHHHcCC-----cEEEEecCCCCcCHHHHHH
Confidence 2111111110 01122333344332 3899999999999998644
No 164
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.58 E-value=1.4e-15 Score=154.01 Aligned_cols=152 Identities=18% Similarity=0.157 Sum_probs=96.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC-e
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-T 161 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~-~ 161 (514)
...|+++|.+|+|||||+++|......+ ......|.......+.+.+ .
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i-------------------------------~~~~ftTl~p~~g~v~~~~~~ 206 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKI-------------------------------ADYHFTTLVPNLGMVETDDGR 206 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEE-------------------------------SSTTSSCCCCCEEEEECSSSC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCcc-------------------------------ccCCccccCceEEEEEeCCCc
Confidence 4579999999999999999984321110 1112334444444455654 7
Q ss_pred EEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-----cCCCeEEEEEe
Q 010278 162 RFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVN 229 (514)
Q Consensus 162 ~i~liDtPGh~~-------f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~-----~~vp~~IvviN 229 (514)
.+.|+||||+.. +....++.+..+|++|+|||++.......+ .+....+..+.. .++| +++|+|
T Consensus 207 ~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~---~~~~~~~~eL~~~~~~l~~~p-~ilV~N 282 (342)
T 1lnz_A 207 SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPY---DDYLTINQELSEYNLRLTERP-QIIVAN 282 (342)
T ss_dssp EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHH---HHHHHHHHHHHHSCSSTTTSC-BCBEEE
T ss_pred eEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChH---HHHHHHHHHHHHhhhhhcCCC-EEEEEE
Confidence 899999999643 445666777889999999999752100000 122333344444 3677 889999
Q ss_pred eccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 230 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 230 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|+|+. + ..+..+++. +.++. ..+++++||++|.|+.++++
T Consensus 283 K~Dl~--~-~~e~~~~l~-------~~l~~----~~~v~~iSA~tg~gi~eL~~ 322 (342)
T 1lnz_A 283 KMDMP--E-AAENLEAFK-------EKLTD----DYPVFPISAVTREGLRELLF 322 (342)
T ss_dssp CTTST--T-HHHHHHHHH-------HHCCS----CCCBCCCSSCCSSTTHHHHH
T ss_pred CccCC--C-CHHHHHHHH-------HHhhc----CCCEEEEECCCCcCHHHHHH
Confidence 99993 2 122222222 22221 15789999999999999754
No 165
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.58 E-value=2.9e-15 Score=141.54 Aligned_cols=151 Identities=13% Similarity=0.150 Sum_probs=85.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|++|+|||||+++|....-... . .. ...|+.. .+.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~-----------------------~-----~~--~~~~~~~-----~~~ 53 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-----------------------V-----VS--QEPLSAA-----DYD 53 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB-----------------------C-----CC--SSCEEET-----TGG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCe-----------------------e-----ee--cCceEEE-----Eee
Confidence 34668999999999999999999954321000 0 00 0111111 115
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhh----cCEEEEEEECC-CCcccccccCCcchHHHHHHHHH-------cCCCeEEEE
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQ----ADIGVLVISAR-KGEFETGFEKGGQTREHVMLAKT-------LGVTKLLLV 227 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~----~D~ailVVda~-~g~~e~~~~~~~qt~e~l~~~~~-------~~vp~~Ivv 227 (514)
...+.|+||||+++|...+...+.. +|++|+|+|+. .... + ....+.+..+.. .++| +++|
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~p-~ilv 126 (218)
T 1nrj_B 54 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKK---L---TTTAEFLVDILSITESSCENGID-ILIA 126 (218)
T ss_dssp GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTC---C---HHHHHHHHHHHHHHHHHSTTCCC-EEEE
T ss_pred CceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHH---H---HHHHHHHHHHHhcccccccCCCC-EEEE
Confidence 6789999999999997766666655 89999999998 2210 1 122333322222 3788 9999
Q ss_pred EeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccc
Q 010278 228 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNM 278 (514)
Q Consensus 228 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi 278 (514)
+||+|+..........+.+.+++..+....+ .+++++||++|.+-
T Consensus 127 ~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~Sa~~~~~~ 171 (218)
T 1nrj_B 127 CNKSELFTARPPSKIKDALESEIQKVIERRK------KSLNEVERKINEED 171 (218)
T ss_dssp EECTTSTTCCCHHHHHHHHHHHHHHHHHHHH------HHHHC---------
T ss_pred EEchHhcccCCHHHHHHHHHHHHHHHHHHHh------cccccccccccccc
Confidence 9999995443222223333344444433332 47899999999864
No 166
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.58 E-value=8.6e-15 Score=140.86 Aligned_cols=159 Identities=15% Similarity=0.181 Sum_probs=93.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe
Q 010278 79 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 158 (514)
Q Consensus 79 ~~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~ 158 (514)
...+.++|+++|++|+|||||+++|+....... .....++|.......+.+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~ 75 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHS-----------------------------GTAAKSITKKCEKRSSSW 75 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC------------------------------------CCSCEEEEEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCcc-----------------------------CCCCCceeeeEEEEEEEe
Confidence 345679999999999999999999964322100 011135666666677888
Q ss_pred CCeEEEEEeCCCCc-----------chHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-----HcCCC
Q 010278 159 ETTRFTILDAPGHK-----------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-----TLGVT 222 (514)
Q Consensus 159 ~~~~i~liDtPGh~-----------~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~-----~~~vp 222 (514)
.+..+.||||||+. .+.+.+......+|++|+|+|+.... ....+.+..+. ....|
T Consensus 76 ~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~--------~~~~~~l~~~~~~~~~~~~~~ 147 (239)
T 3lxx_A 76 KETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT--------EEEHKATEKILKMFGERARSF 147 (239)
T ss_dssp TTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS--------SHHHHHHHHHHHHHHHHHGGG
T ss_pred CCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC--------HHHHHHHHHHHHHhhhhccce
Confidence 89999999999954 34444444456789999999987531 23444444332 23346
Q ss_pred eEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccc-----ccccccc
Q 010278 223 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM-----GLNMKTR 281 (514)
Q Consensus 223 ~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~-----G~gi~~l 281 (514)
+++|+||+|+.....-.+.+....+.+..+++.++. .++++++.. +.++.++
T Consensus 148 -~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~------~~~~~~~~~~~~~~~~~v~~l 204 (239)
T 3lxx_A 148 -MILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD------RYCALNNKATGAEQEAQRAQL 204 (239)
T ss_dssp -EEEEEECGGGC------------CHHHHHHHHHHSS------SEEECCTTCCHHHHHHHHHHH
T ss_pred -EEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC------EEEEEECCCCccccHHHHHHH
Confidence 899999999843211111111112345666666653 355555543 3566654
No 167
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.56 E-value=3.2e-14 Score=139.55 Aligned_cols=118 Identities=12% Similarity=0.050 Sum_probs=79.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|++|+|||||+|+|++..... .....+.|.......+...
T Consensus 36 ~~~~~~I~vvG~~g~GKSSLin~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~ 85 (270)
T 1h65_A 36 DVNSLTILVMGKGGVGKSSTVNSIIGERVVS------------------------------ISPFQSEGPRPVMVSRSRA 85 (270)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSCCSC------------------------------CCSSSCCCSSCEEEEEEET
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCccc------------------------------ccCCCCcceeeEEEEEeeC
Confidence 3457999999999999999999996432110 1112445555555667778
Q ss_pred CeEEEEEeCCCCcchH---HHHHHh------hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-C----CCeEE
Q 010278 160 TTRFTILDAPGHKSYV---PNMISG------ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-G----VTKLL 225 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~---~~~~~g------~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~-~----vp~~I 225 (514)
+..++||||||+.+|. ...... ...+|++|+|+|++...+ .....+.+..+... + .| +|
T Consensus 86 ~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~------~~~~~~~~~~l~~~~~~~~~~~-ii 158 (270)
T 1h65_A 86 GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRV------DNLDKLVAKAITDSFGKGIWNK-AI 158 (270)
T ss_dssp TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCC------CHHHHHHHHHHHHHHCGGGGGG-EE
T ss_pred CeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcC------CHHHHHHHHHHHHHhCcccccC-EE
Confidence 8999999999997763 222222 236999999999865322 12344555555433 4 46 99
Q ss_pred EEEeeccCC
Q 010278 226 LVVNKMDDH 234 (514)
Q Consensus 226 vviNK~D~~ 234 (514)
+|+||+|+.
T Consensus 159 vV~nK~Dl~ 167 (270)
T 1h65_A 159 VALTHAQFS 167 (270)
T ss_dssp EEEECCSCC
T ss_pred EEEECcccC
Confidence 999999984
No 168
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.55 E-value=1.2e-14 Score=133.80 Aligned_cols=160 Identities=12% Similarity=0.157 Sum_probs=90.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEE-----
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE----- 157 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~----- 157 (514)
..+|+++|.+|+|||||+++|.......... .....|+ +.....+.
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~---------------------------~~~t~g~--~~~~~~~~~~~~~ 52 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGM---------------------------QSATVGI--DVKDWPIQIRDKR 52 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC--------------------------------------CSE--EEEEEEC------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCC---------------------------cceeccE--EeEEeeeccccCC
Confidence 3689999999999999999994321110000 0000122 22222221
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--cCCCeEEEEEeeccCCC
Q 010278 158 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 158 ~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~--~~vp~~IvviNK~D~~~ 235 (514)
.....+.++||||+++|.......++.+|++++|+|.+.+.. .+ ......+..+.. .++| +|+|.||+|+.
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--s~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~- 125 (184)
T 2zej_A 53 KRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQA--EV---DAMKPWLFNIKARASSSP-VILVGTHLDVS- 125 (184)
T ss_dssp ---CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHH--HH---HTHHHHHHHHHHHCTTCE-EEEEEECGGGC-
T ss_pred CCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchh--HH---HHHHHHHHHHHhhCCCCc-EEEEEECCCcc-
Confidence 135689999999999887655555678999999999987520 01 122233333332 2677 88899999983
Q ss_pred CCchHHHHHHH-HhhhhhhhhhccCcccCCeeEEeecccccc-ccccccc
Q 010278 236 VNWSKERYDEI-ESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~i-~~~l~~~l~~~g~~~~~~~~iipiSa~~G~-gi~~l~~ 283 (514)
+ ....... ......+.+..++. ...+++++||++|. |+.++.+
T Consensus 126 -~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~~~~~l~~ 170 (184)
T 2zej_A 126 -D--EKQRKACMSKITKELLNKRGFP--AIRDYHFVNATEESDALAKLRK 170 (184)
T ss_dssp -C--HHHHHHHHHHHHHHTTTCTTSC--EEEEEEECCTTSCCHHHHHHHH
T ss_pred -c--chhhHHHHHHHHHHHHHhcCCc--chhheEEEecccCchhHHHHHH
Confidence 2 1111111 12222333334432 11248999999996 8888644
No 169
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.54 E-value=1.6e-14 Score=141.07 Aligned_cols=118 Identities=14% Similarity=0.105 Sum_probs=80.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+.++|+++|++|+|||||+++|++..... .....+.|.......+.+.
T Consensus 33 ~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~ 82 (262)
T 3def_A 33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR------------------------------VSPFQAEGLRPVMVSRTMG 82 (262)
T ss_dssp TCCEEEEEEEECTTSSHHHHHHHHHTSCCSC------------------------------CCSSCC-CCCCEEEEEEET
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCcc------------------------------cCCCCCcceeeEEEEEEEC
Confidence 3467999999999999999999996533211 1122556666666778889
Q ss_pred CeEEEEEeCCCCcchHH---HHHHhh------hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-C----CCeEE
Q 010278 160 TTRFTILDAPGHKSYVP---NMISGA------SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-G----VTKLL 225 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~---~~~~g~------~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~-~----vp~~I 225 (514)
+..++|+|||||.+|.. ...+.+ ..+|++|+|+|.+...+ .....+.+..+... + .| ++
T Consensus 83 ~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~------~~~~~~~~~~l~~~~~~~~~~~-~i 155 (262)
T 3def_A 83 GFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAV------DELDKQVVIAITQTFGKEIWCK-TL 155 (262)
T ss_dssp TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCC------CHHHHHHHHHHHHHHCGGGGGG-EE
T ss_pred CeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCC------CHHHHHHHHHHHHHhchhhhcC-EE
Confidence 99999999999987621 112212 27899999998875422 12334455544443 3 25 89
Q ss_pred EEEeeccCC
Q 010278 226 LVVNKMDDH 234 (514)
Q Consensus 226 vviNK~D~~ 234 (514)
+++||+|+.
T Consensus 156 vv~nK~Dl~ 164 (262)
T 3def_A 156 LVLTHAQFS 164 (262)
T ss_dssp EEEECTTCC
T ss_pred EEEeCcccC
Confidence 999999983
No 170
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.53 E-value=2.2e-14 Score=146.53 Aligned_cols=153 Identities=20% Similarity=0.271 Sum_probs=96.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
...++|+++|.+|+|||||+++|...... .....+.|.+.....+...+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~ 213 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE-------------------------------IASYPFTTRGINVGQFEDGY 213 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCE-------------------------------EECCTTCSSCEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-------------------------------cCCCCCeeeceeEEEEEecC
Confidence 46689999999999999999999432110 01112344444444556678
Q ss_pred eEEEEEeCCCCcchH--------HHHHHhh-hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-c-CCCeEEEEEe
Q 010278 161 TRFTILDAPGHKSYV--------PNMISGA-SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-L-GVTKLLLVVN 229 (514)
Q Consensus 161 ~~i~liDtPGh~~f~--------~~~~~g~-~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~-~-~vp~~IvviN 229 (514)
..+.++||||+.++. ...+... ..+|.+|+|+|++.+. +++.. ...+.+..+.. . +.| +|+|+|
T Consensus 214 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~---~~~~~-~~~~~~~~i~~~~~~~p-iilV~N 288 (357)
T 2e87_A 214 FRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHC---GFPLE-EQIHLFEEVHGEFKDLP-FLVVIN 288 (357)
T ss_dssp EEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTT---SSCHH-HHHHHHHHHHHHTTTSC-EEEEEC
T ss_pred ceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccc---cCCHH-HHHHHHHHHHHhcCCCC-EEEEEE
Confidence 899999999986541 1223233 4699999999987642 01111 11233333333 3 778 999999
Q ss_pred eccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 230 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 230 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|+|+. + ...++ ++..+++.. .++++++||++|+|++++++
T Consensus 289 K~Dl~--~--~~~~~----~~~~~~~~~------~~~~~~iSA~~g~gi~~l~~ 328 (357)
T 2e87_A 289 KIDVA--D--EENIK----RLEKFVKEK------GLNPIKISALKGTGIDLVKE 328 (357)
T ss_dssp CTTTC--C--HHHHH----HHHHHHHHT------TCCCEECBTTTTBTHHHHHH
T ss_pred CcccC--C--hHHHH----HHHHHHHhc------CCCeEEEeCCCCcCHHHHHH
Confidence 99993 2 11222 222333332 35799999999999998755
No 171
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.53 E-value=5.3e-14 Score=131.90 Aligned_cols=156 Identities=15% Similarity=0.160 Sum_probs=94.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
..+..+|+++|++|+|||||+++|+..... . ......|.|...+... +.
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~-~----------------------------~~~~~~G~~~~~~~~~--~~ 71 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSL-A----------------------------RTSKTPGRTQLINLFE--VA 71 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC------------------------------------------CCEEEEE--EE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCcc-c----------------------------cccCCCccceeeEEEE--ec
Confidence 345578999999999999999998422100 0 0011245544433322 22
Q ss_pred CeEEEEEeCCCCcc----------hH---HHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEE
Q 010278 160 TTRFTILDAPGHKS----------YV---PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 226 (514)
Q Consensus 160 ~~~i~liDtPGh~~----------f~---~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~Iv 226 (514)
+ .+.++||||+.. |. .........+|.+++|+|+..+.. ....+....+...++| +++
T Consensus 72 ~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------~~~~~~~~~~~~~~~~-~~~ 142 (210)
T 1pui_A 72 D-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-------DLDQQMIEWAVDSNIA-VLV 142 (210)
T ss_dssp T-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHHHTTCC-EEE
T ss_pred C-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-------hhHHHHHHHHHHcCCC-eEE
Confidence 3 688999999843 22 122222357899999999987632 2334455666778898 788
Q ss_pred EEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 227 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 227 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+.||+|+ .+ ....+.....+..++...+. .++++|+||+++.|+.++++
T Consensus 143 v~nK~D~--~s--~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sal~~~~~~~l~~ 191 (210)
T 1pui_A 143 LLTKADK--LA--SGARKAQLNMVREAVLAFNG----DVQVETFSSLKKQGVDKLRQ 191 (210)
T ss_dssp EEECGGG--SC--HHHHHHHHHHHHHHHGGGCS----CEEEEECBTTTTBSHHHHHH
T ss_pred EEecccC--CC--chhHHHHHHHHHHHHHhcCC----CCceEEEeecCCCCHHHHHH
Confidence 9999998 32 22222223444455554432 36889999999999998543
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.53 E-value=3.4e-14 Score=141.04 Aligned_cols=107 Identities=12% Similarity=0.024 Sum_probs=67.6
Q ss_pred CeEEEEEeCCCCc-------------chHHHHHHhhhhcCEEE-EEEECCCCcccccccCCcchH-HHHHHHHHcCCCeE
Q 010278 160 TTRFTILDAPGHK-------------SYVPNMISGASQADIGV-LVISARKGEFETGFEKGGQTR-EHVMLAKTLGVTKL 224 (514)
Q Consensus 160 ~~~i~liDtPGh~-------------~f~~~~~~g~~~~D~ai-lVVda~~g~~e~~~~~~~qt~-e~l~~~~~~~vp~~ 224 (514)
...++||||||+. .+...+...+..+|.+| +|+|++.+.. .+.. ..+..+...+.| +
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~-------~~~~~~~~~~~~~~~~~-~ 195 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NSDALKIAKEVDPQGQR-T 195 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGG-------GCHHHHHHHHHCTTCSS-E
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchh-------hhHHHHHHHHhCCCCCe-E
Confidence 4789999999964 23444445566788776 6999988742 2432 355555556788 8
Q ss_pred EEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 225 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 225 IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|+|+||+|+.... .... +.+...+..+.. ...+++++||++|.|+.++++
T Consensus 196 i~V~NK~Dl~~~~--~~~~----~~~~~~~~~~~~---~~~~v~~~SA~~~~gi~~l~~ 245 (299)
T 2aka_B 196 IGVITKLDLMDEG--TDAR----DVLENKLLPLRR---GYIGVVNRSQKDIDGKKDITA 245 (299)
T ss_dssp EEEEECGGGSCTT--CCCH----HHHTTCSSCCTT---CEEECCCCCCBCTTSCBCHHH
T ss_pred EEEEEccccCCCC--chHH----HHHhCCcCcCCC---CcEEEECCChhhccccccHHH
Confidence 9999999994321 1011 111111111111 125889999999999998654
No 173
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.52 E-value=2e-14 Score=143.99 Aligned_cols=69 Identities=12% Similarity=0.146 Sum_probs=51.2
Q ss_pred CCeEEEEEeCCCCcc-------------hHHHHHHhhhhcCEEEEEEEC-CCCcccccccCCcch-HHHHHHHHHcCCCe
Q 010278 159 ETTRFTILDAPGHKS-------------YVPNMISGASQADIGVLVISA-RKGEFETGFEKGGQT-REHVMLAKTLGVTK 223 (514)
Q Consensus 159 ~~~~i~liDtPGh~~-------------f~~~~~~g~~~~D~ailVVda-~~g~~e~~~~~~~qt-~e~l~~~~~~~vp~ 223 (514)
....++|+||||+.+ +...+...+..+|++|+|+|+ +.+.. .+. .+.+..+...+.|
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~-------~~~~~~i~~~~~~~~~~- 200 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA-------NSDALQLAKEVDPEGKR- 200 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST-------TCSHHHHHHHHCSSCSS-
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh-------hhHHHHHHHHhCCCCCc-
Confidence 457899999999764 455666677899999999997 44422 233 4566666667888
Q ss_pred EEEEEeeccCCC
Q 010278 224 LLLVVNKMDDHT 235 (514)
Q Consensus 224 ~IvviNK~D~~~ 235 (514)
+|+|+||+|+..
T Consensus 201 ~i~v~NK~Dl~~ 212 (315)
T 1jwy_B 201 TIGVITKLDLMD 212 (315)
T ss_dssp EEEEEECTTSSC
T ss_pred EEEEEcCcccCC
Confidence 899999999943
No 174
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=6.3e-14 Score=132.42 Aligned_cols=155 Identities=19% Similarity=0.178 Sum_probs=89.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 159 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~ 159 (514)
.....+|+++|.+|+|||||+++|......+... ....|.+... ..+..+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~----------------------------~~~~g~d~~~--~~i~~~ 83 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD----------------------------CEVLGEDTYE--RTLMVD 83 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-------------------------------CCTTEEE--EEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc----------------------------CCccceeeEE--EEEEEC
Confidence 3456899999999999999999985322211110 0001222111 223344
Q ss_pred C--eEEEEEeCCCCcchHHHHH-HhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeecc
Q 010278 160 T--TRFTILDAPGHKSYVPNMI-SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMD 232 (514)
Q Consensus 160 ~--~~i~liDtPGh~~f~~~~~-~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D 232 (514)
+ ..+.++||+|.+.+...+. ...+.+|++|+|+|.+.... |+ ...+.+..+.. .++| +|+|.||+|
T Consensus 84 ~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~s---f~---~~~~~~~~l~~~~~~~~~p-iilVgNK~D 156 (211)
T 2g3y_A 84 GESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRAS---FE---KASELRIQLRRARQTEDIP-IILVGNKSD 156 (211)
T ss_dssp TEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHH---HH---HHHHHHHHHHTSGGGTTSC-EEEEEECTT
T ss_pred CeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCCc-EEEEEEChH
Confidence 4 4568899999877322222 22467899999999876311 11 12222233332 2678 999999999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+.... ....+ +...+.... +++++++||++|.|+.++++
T Consensus 157 L~~~r--~v~~~----e~~~~a~~~------~~~~~e~SAk~g~~v~elf~ 195 (211)
T 2g3y_A 157 LVRCR--EVSVS----EGRACAVVF------DCKFIETSAAVQHNVKELFE 195 (211)
T ss_dssp CGGGC--CSCHH----HHHHHHHHH------TCEEEECBTTTTBSHHHHHH
T ss_pred HhcCc--eEeHH----HHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 83210 00011 111122222 35899999999999999754
No 175
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.51 E-value=1.3e-14 Score=156.17 Aligned_cols=153 Identities=18% Similarity=0.216 Sum_probs=94.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEee------e
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG------R 153 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~------~ 153 (514)
..+.++|+++|.+|+|||||+++|.... .... .....|.++... .
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~--~~~~---------------------------~~~t~g~~~~~~~~~~~~~ 88 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGET--FDPK---------------------------ESQTHGLNVVTKQAPNIKG 88 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC----------------------------------------CCCEEEEEGGGSGG
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCC--CCCC---------------------------CCCccceEEEEeccccccc
Confidence 4567899999999999999999995321 1000 000012222110 0
Q ss_pred EEE--EeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcC--CCeEEEEEe
Q 010278 154 AHF--ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVN 229 (514)
Q Consensus 154 ~~~--~~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~--vp~~IvviN 229 (514)
..+ ......+.|+||||++.|.......++.+|++|+|+|++.. ......+..+...+ .| +|+|+|
T Consensus 89 v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---------~~~~~~~~~l~~~~~~~p-vilV~N 158 (535)
T 3dpu_A 89 LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---------SNKHYWLRHIEKYGGKSP-VIVVMN 158 (535)
T ss_dssp GTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---------GGHHHHHHHHHHHSSSCC-EEEEEC
T ss_pred eeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---------hhHHHHHHHHHHhCCCCC-EEEEEE
Confidence 001 12357899999999999877666667889999999999764 25566666666655 88 899999
Q ss_pred eccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 230 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 230 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|+|+.... .... +++...+...+ .+++++||++|.|+.++++
T Consensus 159 K~Dl~~~~--~v~~----~~~~~~~~~~~------~~~~~vSA~~g~gi~eL~~ 200 (535)
T 3dpu_A 159 KIDENPSY--NIEQ----KKINERFPAIE------NRFHRISCKNGDGVESIAK 200 (535)
T ss_dssp CTTTCTTC--CCCH----HHHHHHCGGGT------TCEEECCC-----CTTHHH
T ss_pred CCCccccc--ccCH----HHHHHHHHhcC------CceEEEecCcccCHHHHHH
Confidence 99984321 1111 22333344443 4799999999999998754
No 176
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.49 E-value=1.7e-13 Score=127.22 Aligned_cols=154 Identities=19% Similarity=0.159 Sum_probs=87.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
...++|+++|.+|+|||||+++|......+.... ...|.+.. ...+..++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~----------------------------~~~~~~~~--~~~~~~~~ 53 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX----------------------------EVLGEDTY--ERTLMVDG 53 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC--------------------------------GGGCTTEE--EEEEEETT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc----------------------------cccceeEE--EEEEEECC
Confidence 3458999999999999999999965433221100 00122211 12233444
Q ss_pred --eEEEEEeCCCCcch-HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccC
Q 010278 161 --TRFTILDAPGHKSY-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 233 (514)
Q Consensus 161 --~~i~liDtPGh~~f-~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~ 233 (514)
..+.++||+|.... ........+.+|++|+|+|.+.... |+ ...+.+..+.. .++| +|+|.||+|+
T Consensus 54 ~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s---~~---~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl 126 (192)
T 2cjw_A 54 ESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRAS---FE---KASELRIQLRRARQTEDIP-IILVGNKSDL 126 (192)
T ss_dssp EEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHTTTSCCC-EEEEEECTTC
T ss_pred eEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCCe-EEEEEechhh
Confidence 35678999997652 1111222467899999999876321 11 12222232332 3677 9999999998
Q ss_pred CCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 234 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 234 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
... .....+ +...+.... +++++++||++|.|+.++++
T Consensus 127 ~~~--r~v~~~----~~~~~a~~~------~~~~~e~SA~~g~~v~~lf~ 164 (192)
T 2cjw_A 127 VRX--REVSVS----EGRAXAVVF------DXKFIETSAAVQHNVKELFE 164 (192)
T ss_dssp GGG--CCSCHH----HHHHHHHHT------TCEEEECBTTTTBSHHHHHH
T ss_pred hcc--ccccHH----HHHHHHHHh------CCceEEeccccCCCHHHHHH
Confidence 321 000011 111111222 35899999999999998754
No 177
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.46 E-value=7.4e-14 Score=142.48 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=70.1
Q ss_pred EeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCC
Q 010278 157 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 157 ~~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~ 236 (514)
...++.+.||||||...- ....+..+|++|+|+|+..+... +... ...+..| +++|+||+|+ .
T Consensus 168 ~~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~-------~~l~----~~~~~~p-~ivVlNK~Dl--~ 230 (355)
T 3p32_A 168 EAAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQL-------QGIK----KGVLELA-DIVVVNKADG--E 230 (355)
T ss_dssp HHTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTT-------TTCC----TTSGGGC-SEEEEECCCG--G
T ss_pred hhCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccH-------HHHH----HhHhhcC-CEEEEECCCC--c
Confidence 346789999999996542 22335889999999998766321 1110 0113457 7899999998 3
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcc-cCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~-~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+ ....+....++...+..++... ....|++++||++|.|+.++++
T Consensus 231 ~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~ 276 (355)
T 3p32_A 231 H--HKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWD 276 (355)
T ss_dssp G--HHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHH
T ss_pred C--hhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHH
Confidence 2 3344455566666555442110 0136899999999999998754
No 178
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.46 E-value=1.6e-13 Score=127.85 Aligned_cols=152 Identities=17% Similarity=0.192 Sum_probs=94.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC-
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 160 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~- 160 (514)
..++|+++|+.|+|||||+++|........ .....|.+...+ .+..++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~-----------------------------~~~t~~~~~~~~--~i~~~g~ 52 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-----------------------------SKSTIGVEFATR--SIQVDGK 52 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC--------------------------------CCCSCEEEEE--EEEETTE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------------CCCccceeEEEE--EEEECCE
Confidence 358899999999999999999954321100 001122333233 344444
Q ss_pred -eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCC
Q 010278 161 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 161 -~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~~~ 236 (514)
..+.|+||||++.|..........+|++|+|+|...... + ......+..+.. .+.| +++++||+|+...
T Consensus 53 ~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~ 125 (199)
T 2f9l_A 53 TIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLT---Y---ENVERWLKELRDHADSNIV-IMLVGNKSDLRHL 125 (199)
T ss_dssp EEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCe-EEEEEECcccccc
Confidence 467889999999886555555678999999999886421 0 122223333332 3566 8999999998321
Q ss_pred CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 237 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 237 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
..... .+...+.... .++++.+||+++.|+.++++
T Consensus 126 --~~~~~----~~a~~l~~~~------~~~~~d~Sal~~~~i~~l~~ 160 (199)
T 2f9l_A 126 --RAVPT----DEARAFAEKN------NLSFIETSALDSTNVEEAFK 160 (199)
T ss_dssp --CCSCH----HHHHHHHHHT------TCEEEECCTTTCTTHHHHHH
T ss_pred --cCcCH----HHHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 11111 1122333333 35789999999999998755
No 179
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.46 E-value=1.8e-13 Score=151.11 Aligned_cols=114 Identities=19% Similarity=0.232 Sum_probs=70.2
Q ss_pred eEEEEEeCCCCcc---hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHH-HHHHcCCCeEEEEEeeccCCCC
Q 010278 161 TRFTILDAPGHKS---YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKTLGVTKLLLVVNKMDDHTV 236 (514)
Q Consensus 161 ~~i~liDtPGh~~---f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~-~~~~~~vp~~IvviNK~D~~~~ 236 (514)
..++||||||+.+ ....+...+..+|++|+|+|++.+.. ....+.+. .+...+.| +++|+||+|+...
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s-------~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCT-------LGERRYLENYIKGRGLT-VFFLVNAWDQVRE 245 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTC-------HHHHHHHHHHTTTSCCC-EEEEEECGGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccc-------hhHHHHHHHHHHhhCCC-EEEEEECcccccc
Confidence 4699999999765 34455566788999999999988732 23444443 34445778 8999999998422
Q ss_pred Cc-hH---HHHHHHHhhhh----hhhhhc----cCcccCCeeEEeeccc--------------cccccccccc
Q 010278 237 NW-SK---ERYDEIESKMT----PFLKAS----GYNVKKDVQFLPISGL--------------MGLNMKTRVD 283 (514)
Q Consensus 237 ~~-~~---~~~~~i~~~l~----~~l~~~----g~~~~~~~~iipiSa~--------------~G~gi~~l~~ 283 (514)
.. +. +.+++..+.+. ..+... |+. ....+++++||+ +|.|+.++.+
T Consensus 246 ~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~-~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~ 317 (695)
T 2j69_A 246 SLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQN-IYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMD 317 (695)
T ss_dssp GCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCB-CGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHH
T ss_pred cccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccc-cCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHH
Confidence 10 01 12222222222 222211 111 013579999999 9999988644
No 180
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.46 E-value=1.7e-13 Score=141.58 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=24.1
Q ss_pred eEEEEEeCCCCcch-------HHHHHHhhhhcCEEEEEEECCCC
Q 010278 161 TRFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKG 197 (514)
Q Consensus 161 ~~i~liDtPGh~~f-------~~~~~~g~~~~D~ailVVda~~g 197 (514)
..+.|+||||+.+. ....+..++.+|++++|+|+..+
T Consensus 71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 57999999998643 12223446899999999999875
No 181
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.6e-13 Score=126.83 Aligned_cols=115 Identities=15% Similarity=0.159 Sum_probs=69.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+.++|+++|++|+|||||+++|...... . .. .....+++.+ +..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~--~-~~-------------------------~~~~~~~~~~-------~~~ 90 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVR--P-TV-------------------------VSQEPLSAAD-------YDG 90 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------------------------------C-------CCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC--c-cc-------------------------ccCCCceeee-------ecC
Confidence 46689999999999999999999543211 0 00 0000111111 156
Q ss_pred eEEEEEeCCCCcchHHHHHHhhh----hcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-------cCCCeEEEEEe
Q 010278 161 TRFTILDAPGHKSYVPNMISGAS----QADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-------LGVTKLLLVVN 229 (514)
Q Consensus 161 ~~i~liDtPGh~~f~~~~~~g~~----~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~-------~~vp~~IvviN 229 (514)
..+.|+||||+..|...+...+. .+|++|+|+|+..... .+ ....+.+..+.. .++| +++|+|
T Consensus 91 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~p-~ilv~n 164 (193)
T 2ged_A 91 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPK--KL---TTTAEFLVDILSITESSCENGID-ILIACN 164 (193)
T ss_dssp TTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHH--HH---HHHHHHHHHHHHHHHHHSTTCCC-EEEEEE
T ss_pred CeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCch--hH---HHHHHHHHHHHhhhhhccccCCC-EEEEEE
Confidence 78999999999888544444443 4899999999982210 00 012222222211 3788 999999
Q ss_pred eccCCCC
Q 010278 230 KMDDHTV 236 (514)
Q Consensus 230 K~D~~~~ 236 (514)
|+|+...
T Consensus 165 K~Dl~~~ 171 (193)
T 2ged_A 165 KSELFTA 171 (193)
T ss_dssp CTTSTTC
T ss_pred chHhcCC
Confidence 9999543
No 182
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.41 E-value=2.9e-13 Score=137.35 Aligned_cols=107 Identities=16% Similarity=0.088 Sum_probs=67.1
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010278 158 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 158 ~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~ 237 (514)
+.++.++||||||+.++.... ...+|++|+|+|+..+.. + +.... ...++| .++|+||+|+..
T Consensus 146 ~~~~~i~liDTpG~~~~~~~~---~~~aD~vl~Vvd~~~~~~---~----~~l~~----~~~~~p-~ivv~NK~Dl~~-- 208 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETEV---ARMVDCFISLQIAGGGDD---L----QGIKK----GLMEVA-DLIVINKDDGDN-- 208 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHHH---HTTCSEEEEEECC-------------CCCCH----HHHHHC-SEEEECCCCTTC--
T ss_pred ccCCCEEEEeCCCccchHHHH---HHhCCEEEEEEeCCccHH---H----HHHHH----hhhccc-CEEEEECCCCCC--
Confidence 567899999999988765443 579999999999986632 1 11111 113557 788999999832
Q ss_pred chHHHHHHHHhhhhhhhhhccCc-ccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~-~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
...+....+++...+..++.. .....+++|+||++|.|+.++.+
T Consensus 209 --~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~ 253 (341)
T 2p67_A 209 --HTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWH 253 (341)
T ss_dssp --HHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHH
Confidence 223444444555444433210 00024799999999999998754
No 183
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.40 E-value=3.9e-13 Score=134.02 Aligned_cols=177 Identities=15% Similarity=0.188 Sum_probs=103.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeEEE
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 164 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~i~ 164 (514)
+|.++|..++|||||+.++.. +. ... ....-+.|+......+. ....+.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~--~~-~~~---------------------------~~~~~~~Tig~~~~~v~-~~v~Lq 49 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFH--NM-QPL---------------------------DTLYLESTSNPSLEHFS-TLIDLA 49 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHS--CC-CSG---------------------------GGTTCCCCCSCCCEEEC-SSSCEE
T ss_pred CEEEECCCCCCHHHHHHHHHc--CC-CCC---------------------------ccceecCeeeeeeEEEc-cEEEEE
Confidence 478999999999999987621 11 100 00112344444433332 347899
Q ss_pred EEeCCCCcchHH---HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHH----HHHHHH--cCCCeEEEEEeeccCCC
Q 010278 165 ILDAPGHKSYVP---NMISGASQADIGVLVISARKGEFETGFEKGGQTREH----VMLAKT--LGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 165 liDtPGh~~f~~---~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~----l~~~~~--~~vp~~IvviNK~D~~~ 235 (514)
||||||+++|.. .+....+.++++|+|+|++.. +. ...+. +..+.. -++| ++++.||+|+..
T Consensus 50 IWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~-------~~~~~l~~~l~~~~~~~~~ip-illvgNK~DL~~ 120 (331)
T 3r7w_B 50 VMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YI-------NAITNLAMIIEYAYKVNPSIN-IEVLIHKVDGLS 120 (331)
T ss_dssp EEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TT-------HHHHHHHHHHHHHHHHCTTCE-EEEECCCCCSSC
T ss_pred EEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HH-------HHHHHHHHHHHHHhhcCCCCc-EEEEEECcccCc
Confidence 999999999953 234456899999999999876 32 22322 222222 3677 899999999943
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCC-CcccHHHHhhhcc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWW-NGPCLFEALDRIE 303 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~-~g~tL~~~l~~l~ 303 (514)
.+...+...++..+....+.+.++. ..+++|+.+||++ .|+.+.+......+. ..++|.+.|+.+.
T Consensus 121 ~~~R~~~~R~V~~~~~~~la~~~~~-~~~i~f~eTSAkd-~nV~eAFs~iv~~li~~~~~le~~L~~~~ 187 (331)
T 3r7w_B 121 EDFKVDAQRDIMQRTGEELLELGLD-GVQVSFYLTSIFD-HSIYEAFSRIVQKLIPELSFLENMLDNLI 187 (331)
T ss_dssp SHHHHHHHHHHHHHHHHTTSSSSCS-CCCEEEECCCSSS-SHHHHHHHHHHTTSSTTHHHHHHHHTGGG
T ss_pred hhhhhhHHHHhhHHHHHHHHhhccc-ccCceEEEeccCC-CcHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2211111234444433334443221 1258999999998 588775443222222 2334555555543
No 184
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.38 E-value=9e-13 Score=122.11 Aligned_cols=153 Identities=18% Similarity=0.185 Sum_probs=93.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
...+.|+++|..|+|||||+++|....-.. .....++.+.....+..++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~i~~~g 75 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNL-------------------------------ESKSTIGVEFATRSIQVDG 75 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCC-------------------------------SCCCCCSEEEEEEEEEETT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCC-------------------------------CCCCccceEEEEEEEEECC
Confidence 346899999999999999999995422110 0011222222233444555
Q ss_pred e--EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCC
Q 010278 161 T--RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 235 (514)
Q Consensus 161 ~--~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp~~IvviNK~D~~~ 235 (514)
. .+.++||||+++|...+......+|.+++|+|...... + ......+..+.. .+.| +++++||+|+..
T Consensus 76 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~ 148 (191)
T 1oix_A 76 KTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLT---Y---ENVERWLKELRDHADSNIV-IMLVGNKSDLRH 148 (191)
T ss_dssp EEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECccccc
Confidence 4 45679999999886655555678899999999876421 0 012222322332 2456 899999999832
Q ss_pred CCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 236 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 236 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. ..... .....+.... .+.++.+||+++.|+.++++
T Consensus 149 ~--~~~~~----~~a~~l~~~~------~~~~ld~Sald~~~v~~l~~ 184 (191)
T 1oix_A 149 L--RAVPT----DEARAFAEKN------GLSFIETSALDSTNVEAAFQ 184 (191)
T ss_dssp G--CCSCH----HHHHHHHHHT------TCEEEECCTTTCTTHHHHHH
T ss_pred c--cccCH----HHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 1 11111 1222333333 35789999999999988543
No 185
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.36 E-value=3.1e-12 Score=130.65 Aligned_cols=159 Identities=14% Similarity=0.206 Sum_probs=74.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC-
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 160 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~- 160 (514)
..++|+++|++|+|||||+++|+.. +...... ...........+++......+...+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~-~~~~~~~---------------------~~~~~~~~~~ti~~~~~~~~~~~~~~ 93 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLT-DLYPERV---------------------IPGAAEKIERTVQIEASTVEIEERGV 93 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTC-CC------------------------------------CEEEEEEEEC----CE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCC-CCCCCCc---------------------ccCCCcccCCceeEEEEEEEeecCCc
Confidence 4588999999999999999998432 1111100 0000011123333333333344444
Q ss_pred -eEEEEEeCCCC-------cchH---H-------HHHHhhhh----------cCEEEEEEECCCCcccccccCCcchHHH
Q 010278 161 -TRFTILDAPGH-------KSYV---P-------NMISGASQ----------ADIGVLVISARKGEFETGFEKGGQTREH 212 (514)
Q Consensus 161 -~~i~liDtPGh-------~~f~---~-------~~~~g~~~----------~D~ailVVda~~g~~e~~~~~~~qt~e~ 212 (514)
..++++||||+ +.|. . ..++.... +|+++++|++....+ .....+.
T Consensus 94 ~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l------~~~d~~~ 167 (361)
T 2qag_A 94 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGL------KPLDVAF 167 (361)
T ss_dssp EEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSC------CHHHHHH
T ss_pred ccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCc------chhHHHH
Confidence 37899999999 3331 1 22222222 357888888633221 1223333
Q ss_pred HHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 213 VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 213 l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
+..+ ..++| +|+|+||+|+.. .......+.++..+++..+ ++++++||++|.| .+.
T Consensus 168 ~~~l-~~~~p-iIlV~NK~Dl~~----~~ev~~~k~~i~~~~~~~~------i~~~~~Sa~~~~~-~e~ 223 (361)
T 2qag_A 168 MKAI-HNKVN-IVPVIAKADTLT----LKERERLKKRILDEIEEHN------IKIYHLPDAESDE-DED 223 (361)
T ss_dssp HHHT-CS-SC-EEEEEECCSSSC----HHHHHHHHHHHHHHTTCC-------CCSCCCC----------
T ss_pred HHHh-ccCCC-EEEEEECCCCCC----HHHHHHHHHHHHHHHHHCC------CCEEeCCCcCCCc-chh
Confidence 3333 35688 999999999932 2334444456666665543 5789999999998 554
No 186
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.36 E-value=1.4e-12 Score=140.28 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=59.2
Q ss_pred eEEEEEeCCCCcc-----------hHHHHHHhhhhcCEEEEEEECCC-CcccccccCCcchHHHHHHHHHcCCCeEEEEE
Q 010278 161 TRFTILDAPGHKS-----------YVPNMISGASQADIGVLVISARK-GEFETGFEKGGQTREHVMLAKTLGVTKLLLVV 228 (514)
Q Consensus 161 ~~i~liDtPGh~~-----------f~~~~~~g~~~~D~ailVVda~~-g~~e~~~~~~~qt~e~l~~~~~~~vp~~Ivvi 228 (514)
..++||||||+.+ |...+...+..+|++|+|+|+.. +.. .++.+++..+...+.| +++|+
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~-------~~~~~~l~~l~~~~~p-vilVl 225 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEIS-------DEFSEAIGALRGHEDK-IRVVL 225 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCC-------HHHHHHHHHTTTCGGG-EEEEE
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCC-------HHHHHHHHHHHhcCCC-EEEEE
Confidence 4699999999876 66677777889999999999987 332 4667777777777788 89999
Q ss_pred eeccCCCCCchHHHHHHHHhhhh
Q 010278 229 NKMDDHTVNWSKERYDEIESKMT 251 (514)
Q Consensus 229 NK~D~~~~~~~~~~~~~i~~~l~ 251 (514)
||+|+ .+ ...+.++...+.
T Consensus 226 NK~Dl--~~--~~el~~~~~~l~ 244 (550)
T 2qpt_A 226 NKADM--VE--TQQLMRVYGALM 244 (550)
T ss_dssp ECGGG--SC--HHHHHHHHHHHH
T ss_pred ECCCc--cC--HHHHHHHHHHhh
Confidence 99999 32 334445544443
No 187
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.35 E-value=2.1e-12 Score=131.26 Aligned_cols=107 Identities=17% Similarity=0.106 Sum_probs=60.4
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010278 158 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 158 ~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~ 237 (514)
..++.+.|+||||....- ......+|++++|+|+..|.. .+ .+.. ..+..| .++++||+|+ .+
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~-------~~---~i~~-~il~~~-~ivVlNK~Dl--~~ 226 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDE-------LQ---GIKR-GIIEMA-DLVAVTKSDG--DL 226 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC-----------------------CCSC-SEEEECCCSG--GG
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchh-------HH---HhHH-HHHhcC-CEEEEeeecC--CC
Confidence 467889999999964221 223568999999999987621 11 1111 224667 6889999998 32
Q ss_pred chHHHHHHHHhhhhhhhhhccCc-ccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~-~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
..........+...++..... .....+++++||++|.|+.++.+
T Consensus 227 --~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~ 271 (349)
T 2www_A 227 --IVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWD 271 (349)
T ss_dssp --HHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHH
T ss_pred --chhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHH
Confidence 112222333333333221100 00135899999999999998654
No 188
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.34 E-value=3.4e-12 Score=130.09 Aligned_cols=107 Identities=12% Similarity=0.031 Sum_probs=62.3
Q ss_pred CeEEEEEeCCCCcc------------hHH-HHHHhhhh-cCEEEEEEECCCCcccccccCCcchH-HHHHHHHHcCCCeE
Q 010278 160 TTRFTILDAPGHKS------------YVP-NMISGASQ-ADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTLGVTKL 224 (514)
Q Consensus 160 ~~~i~liDtPGh~~------------f~~-~~~~g~~~-~D~ailVVda~~g~~e~~~~~~~qt~-e~l~~~~~~~vp~~ 224 (514)
...++||||||..+ .+. .+...+.. .+++++|+|++.+.. .+.. +.+..+...+.| +
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~-------~~~~~~i~~~~~~~~~~-~ 200 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NSDALKVAKEVDPQGQR-T 200 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGG-------GCHHHHHHHHHCTTCTT-E
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccc-------hhHHHHHHHHhCcCCCc-e
Confidence 57899999999632 223 33333434 456666788876532 2333 344555556788 8
Q ss_pred EEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 225 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 225 IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
|+|+||+|+.... .. ...+.+ ..+..+.. ...+++++||++|.|+.++++
T Consensus 201 i~V~NK~Dl~~~~--~~-~~~~~~---~~~~~l~~---~~~~v~~~SA~~~~~i~~l~~ 250 (353)
T 2x2e_A 201 IGVITKLDLMDEG--TD-ARDVLE---NKLLPLRR---GYIGVVNRSQKDIDGKKDITA 250 (353)
T ss_dssp EEEEECGGGSCTT--CC-CHHHHT---TCSSCCTT---CEEECCCCCHHHHHTTCCHHH
T ss_pred EEEeccccccCcc--hh-HHHHHh---CCcccccC---CceEEEeCCcccccccccHHH
Confidence 9999999994321 10 111111 11111110 124789999999999987654
No 189
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.33 E-value=3.4e-12 Score=140.41 Aligned_cols=120 Identities=13% Similarity=0.073 Sum_probs=73.5
Q ss_pred ccEEEeeeEEEEeC-CeEEEEEeCCCCcc------------hHHHHHH-hh-hhcCEEEEEEECCCCcccccccCCcchH
Q 010278 146 GKTVEVGRAHFETE-TTRFTILDAPGHKS------------YVPNMIS-GA-SQADIGVLVISARKGEFETGFEKGGQTR 210 (514)
Q Consensus 146 giT~~~~~~~~~~~-~~~i~liDtPGh~~------------f~~~~~~-g~-~~~D~ailVVda~~g~~e~~~~~~~qt~ 210 (514)
|++-+.....+... ...++|+||||... -+..++. .+ ..+|++++||||+.+.. .+..
T Consensus 134 ~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~-------~~d~ 206 (772)
T 3zvr_A 134 GISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NSDA 206 (772)
T ss_dssp CCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSS-------SCHH
T ss_pred cccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcc-------hhHH
Confidence 44433333333333 45799999999543 1222222 22 47899999999998743 3444
Q ss_pred -HHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhh-hccCcccCCeeEEeeccccccccccccc
Q 010278 211 -EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLK-ASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 211 -e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~-~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+.+..+...+.| +|+|+||+|+.... .. ...+.. ...+. ..+ ..+++|+||++|.|+.++.+
T Consensus 207 l~ll~~L~~~g~p-vIlVlNKiDlv~~~--~~-~~~il~--~~~~~l~lg-----~~~VV~iSA~~G~GvdeL~e 270 (772)
T 3zvr_A 207 LKIAKEVDPQGQR-TIGVITKLDLMDEG--TD-ARDVLE--NKLLPLRRG-----YIGVVNRSQKDIDGKKDITA 270 (772)
T ss_dssp HHHHHHHCTTCSS-EEEEEECTTSSCTT--CC-SHHHHT--TCSSCCSSC-----EEECCCCCCEESSSSEEHHH
T ss_pred HHHHHHHHhcCCC-EEEEEeCcccCCcc--hh-hHHHHH--HHhhhhhcc-----CCceEEecccccccchhHHH
Confidence 566667777888 89999999994322 11 111111 00110 122 35899999999999988765
No 190
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.33 E-value=3.2e-12 Score=130.60 Aligned_cols=104 Identities=12% Similarity=0.090 Sum_probs=65.1
Q ss_pred CeEEEEEeCCCCcch-------------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEE
Q 010278 160 TTRFTILDAPGHKSY-------------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 226 (514)
Q Consensus 160 ~~~i~liDtPGh~~f-------------~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~Iv 226 (514)
...++||||||..++ .......+..+|++|||+|+..... ......+.+..+...+.| +|+
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~-----~~~~~~~l~~~~~~~~~~-~i~ 208 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDL-----ATSDAIKISREVDPSGDR-TFG 208 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCG-----GGCHHHHHHHHSCTTCTT-EEE
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCc-----CCHHHHHHHHHhcccCCC-EEE
Confidence 568999999998776 4455556789999999998754221 011223333444445677 899
Q ss_pred EEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 227 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 227 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
|+||+|+.... .... +.+...... ...+++++|+.++.++.+.
T Consensus 209 V~nK~Dl~~~~--~~~~----~~~~~~~~~------~~~~~~~v~~~s~~~i~~~ 251 (360)
T 3t34_A 209 VLTKIDLMDKG--TDAV----EILEGRSFK------LKYPWVGVVNRSQADINKN 251 (360)
T ss_dssp EEECGGGCCTT--CCSH----HHHTTSSSC------CSSCCEEECCCCHHHHHTT
T ss_pred EEeCCccCCCc--ccHH----HHHcCcccc------ccCCeEEEEECChHHhccC
Confidence 99999984321 1111 111111111 1357899999999988764
No 191
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.32 E-value=5.1e-13 Score=129.91 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=49.9
Q ss_pred hcCEEEEEEECCCC---cccccccCCcchHHHHHHHH----HcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhh
Q 010278 184 QADIGVLVISARKG---EFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKA 256 (514)
Q Consensus 184 ~~D~ailVVda~~g---~~e~~~~~~~qt~e~l~~~~----~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~ 256 (514)
.+|++|+|+|++.. .++ ...+.+..+. ..++| +|+|.||+|+ .+ .... ++...+.+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~-------~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl--~~--~~~v----~~~~~~~~~ 225 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFD-------DQLKFVSNLYNQLAKTKKP-IVVVLTKCDE--GV--ERYI----RDAHTFALS 225 (255)
T ss_dssp ECCEEEEEEECBC----CHH-------HHHHHHHHHHHHHHHTTCC-EEEEEECGGG--BC--HHHH----HHHHHHHHT
T ss_pred cCCEEEEEEECCCCchhhHH-------HHHHHHHHHHHHhccCCCC-EEEEEEcccc--cc--cHHH----HHHHHHHHh
Confidence 58999999999874 221 2223333332 24788 9999999998 32 1112 233333333
Q ss_pred ccCcccCCeeEEeeccccccccccccc
Q 010278 257 SGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 257 ~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
. ..++++++||++|.|+.++++
T Consensus 226 ~-----~~~~~~e~SAk~g~gv~elf~ 247 (255)
T 3c5h_A 226 K-----KNLQVVETSARSNVNVDLAFS 247 (255)
T ss_dssp S-----SSCCEEECBTTTTBSHHHHHH
T ss_pred c-----CCCeEEEEECCCCCCHHHHHH
Confidence 2 135899999999999998644
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.30 E-value=1.8e-12 Score=122.52 Aligned_cols=165 Identities=15% Similarity=0.170 Sum_probs=89.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEe-ee---EEE
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEV-GR---AHF 156 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~-~~---~~~ 156 (514)
.+.++|+++|++|+|||||+++|+........-. ... .+.+.+ .|.. .-+..|+++.. .. ..+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~--~i~---~d~~~~-------~d~~-~~~~~~~~~~~~~~~~~~~~ 94 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIG--AML---GDVVSK-------ADYE-RVRRFGIKAEAISTGKECHL 94 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEE--EEE---CSCCCH-------HHHH-HHHTTTCEEEECCCTTCSSC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEE--EEe---cCCCCc-------hhHH-HHHhCCCcEEEecCCceeec
Confidence 4568999999999999999999987643210000 000 000000 0000 00112332111 00 011
Q ss_pred ----------EeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEE
Q 010278 157 ----------ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 226 (514)
Q Consensus 157 ----------~~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~Iv 226 (514)
.+.+..+.||||||...- +... ...++.+++|+|+..+.. . .+......+.| +++
T Consensus 95 ~~~~~~~~~~~~~~~d~iiidt~G~~~~-~~~~--~~~~~~~i~vvd~~~~~~--------~---~~~~~~~~~~~-~ii 159 (221)
T 2wsm_A 95 DAHMIYHRLKKFSDCDLLLIENVGNLIC-PVDF--DLGENYRVVMVSVTEGDD--------V---VEKHPEIFRVA-DLI 159 (221)
T ss_dssp CHHHHHTTGGGGTTCSEEEEEEEEBSSG-GGGC--CCSCSEEEEEEEGGGCTT--------H---HHHCHHHHHTC-SEE
T ss_pred ccHHHHHHHHhcCCCCEEEEeCCCCCCC-Cchh--ccccCcEEEEEeCCCcch--------h---hhhhhhhhhcC-CEE
Confidence 335678999999994110 0000 124688999999987621 1 11223345678 789
Q ss_pred EEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 227 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 227 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
++||+|+. +.....++++.+. ++.++ ...+++++||++|.|+.++++
T Consensus 160 v~NK~Dl~--~~~~~~~~~~~~~----~~~~~----~~~~i~~~Sa~~g~gi~~l~~ 206 (221)
T 2wsm_A 160 VINKVALA--EAVGADVEKMKAD----AKLIN----PRAKIIEMDLKTGKGFEEWID 206 (221)
T ss_dssp EEECGGGH--HHHTCCHHHHHHH----HHHHC----TTSEEEECBTTTTBTHHHHHH
T ss_pred EEecccCC--cchhhHHHHHHHH----HHHhC----CCCeEEEeecCCCCCHHHHHH
Confidence 99999983 2111123333333 33332 136899999999999998644
No 193
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.28 E-value=1.1e-11 Score=128.43 Aligned_cols=154 Identities=19% Similarity=0.240 Sum_probs=90.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC-
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 160 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~- 160 (514)
....|+++|++|||||||+++|......+. .....|.......+...+
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~-------------------------------~~~ftTl~p~~G~V~~~~~ 204 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHPKIA-------------------------------PYPFTTLSPNLGVVEVSEE 204 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCCEEC-------------------------------CCTTCSSCCEEEEEECSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCcccc-------------------------------CcccceecceeeEEEecCc
Confidence 345799999999999999999843211100 001112222222344454
Q ss_pred eEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-cCCCeEEEEEeecc
Q 010278 161 TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMD 232 (514)
Q Consensus 161 ~~i~liDtPGh~~-------f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~-~~vp~~IvviNK~D 232 (514)
..++++|+||+.. +.....+.+..+|.+|+|+|+....++ .++ .-.++...++.. ...| .|+++||+|
T Consensus 205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~-~ls--~g~~el~~la~aL~~~P-~ILVlNKlD 280 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLK-TLE--TLRKEVGAYDPALLRRP-SLVALNKVD 280 (416)
T ss_dssp CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHH-HHH--HHHHHHHHHCHHHHHSC-EEEEEECCT
T ss_pred ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHH-HHH--HHHHHHHHHhHHhhcCC-EEEEEECCC
Confidence 7899999999743 223334456679999999999721110 010 011122222222 3567 677889999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccccc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDK 284 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~ 284 (514)
+ .. ...+ ..+...++.. ..+++++||+++.|+.++++.
T Consensus 281 l--~~--~~~~----~~l~~~l~~~------g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 281 L--LE--EEAV----KALADALARE------GLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp T--SC--HHHH----HHHHHHHHTT------TSCEEECCTTTCTTHHHHHHH
T ss_pred h--hh--HHHH----HHHHHHHHhc------CCeEEEEECCCccCHHHHHHH
Confidence 8 32 1222 3333334433 357999999999999997653
No 194
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.21 E-value=4.4e-11 Score=116.09 Aligned_cols=107 Identities=13% Similarity=0.143 Sum_probs=64.0
Q ss_pred CeEEEEEeCCCCcchHHH------HHHhhhhcCEEEEEEECCCCcccccccCCcchHH-----HHHHHHHcCCCeEEEEE
Q 010278 160 TTRFTILDAPGHKSYVPN------MISGASQADIGVLVISARKGEFETGFEKGGQTRE-----HVMLAKTLGVTKLLLVV 228 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~------~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e-----~l~~~~~~~vp~~Ivvi 228 (514)
.+.+.||||||..++... +...+.. +++|+|+|+..... ..... .+......++| +++++
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~-------~~~~~~~~~~~~~~~~~~~~p-~~iv~ 178 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKK-------PNDYCFVRFFALLIDLRLGAT-TIPAL 178 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCS-------HHHHHHHHHHHHHHHHHHTSC-EEEEE
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcC-------HHHHHHHHHHHHHHhcccCCC-eEEEE
Confidence 368999999998776422 2234556 89999999876421 11111 11223345788 88999
Q ss_pred eeccCCCCCchHHHHHHHHh---hhhhh---------------------hhhccCcccCCeeEEeeccccccccccccc
Q 010278 229 NKMDDHTVNWSKERYDEIES---KMTPF---------------------LKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 229 NK~D~~~~~~~~~~~~~i~~---~l~~~---------------------l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
||+|+... ...+++.+ ++..+ ++.++. ..+++++||++|.|+.++++
T Consensus 179 NK~D~~~~----~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~SA~~~~gi~~l~~ 249 (262)
T 1yrb_A 179 NKVDLLSE----EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP----PVRVLYLSAKTREGFEDLET 249 (262)
T ss_dssp CCGGGCCH----HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC----CCCCEECCTTTCTTHHHHHH
T ss_pred eccccccc----ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcC----cccceEEEecCcccHHHHHH
Confidence 99998321 11222222 11111 122221 24799999999999998644
No 195
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.16 E-value=5.3e-11 Score=121.35 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=80.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCe
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 161 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~ 161 (514)
...+|+|+|.||+|||||+|+|...... .....+.|++.....+.+.+.
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~-------------------------------v~~~pftT~~~~~g~~~~~~~ 119 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESE-------------------------------AAEYEFTTLVTVPGVIRYKGA 119 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCC-------------------------------GGGTCSSCCCEEEEEEEETTE
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCc-------------------------------ccCCCCceeeeeeEEEEeCCc
Confidence 4578999999999999999999432211 233467888888788889999
Q ss_pred EEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHH-HHHHHc-----CCCeEEEEE
Q 010278 162 RFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTL-----GVTKLLLVV 228 (514)
Q Consensus 162 ~i~liDtPGh~~-------f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l-~~~~~~-----~vp~~Ivvi 228 (514)
++.|+||||..+ ..+..+..++.||++++|||+.++. ...+.+ ..+... ..| .++++
T Consensus 120 ~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~---------~~~~~i~~EL~~~~~~l~~k~-~~i~~ 189 (376)
T 4a9a_A 120 KIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPL---------HHKQIIEKELEGVGIRLNKTP-PDILI 189 (376)
T ss_dssp EEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHH---------HHHHHHHHHHHHTTEEETCCC-CCEEE
T ss_pred EEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccH---------HHHHHHHHHHHHhhHhhccCC-hhhhh
Confidence 999999999632 3456677789999999999998753 122222 222222 345 67899
Q ss_pred eeccC
Q 010278 229 NKMDD 233 (514)
Q Consensus 229 NK~D~ 233 (514)
||+|.
T Consensus 190 nK~d~ 194 (376)
T 4a9a_A 190 KKKEK 194 (376)
T ss_dssp EECSS
T ss_pred hHhhh
Confidence 99997
No 196
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=99.11 E-value=2.1e-10 Score=94.96 Aligned_cols=80 Identities=20% Similarity=0.246 Sum_probs=69.7
Q ss_pred CCCceEEEEEEEc-cCCeEEEEEEeeeeeecCCEEEEecCC-cEEEEEEEEECCeeeeecCCCCeEEEEccCCCccccee
Q 010278 310 NGPFRMPIIDKFK-DMGTVVMGKVESGSVREGDSLLVMPNK-AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILS 387 (514)
Q Consensus 310 ~~p~~~~i~~~~~-~~G~v~~g~v~sG~l~~gd~v~~~p~~-~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~ 387 (514)
..|..+.|..++. -.|+++.|+|++|+|++|+.| |++ ...+|+||+++++++++|.+||.|+++++|++. ++++
T Consensus 32 ~~P~k~~ilp~~~~vFgpvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~-~I~~ 107 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMGKDVIIGTVESGMIGVGFKV---KGPSGIGGIVRIERNREKVEFAIAGDRIGISIEGKIG-KVKK 107 (116)
T ss_dssp SCSEEEEEEEEEEETTEEEEEEEEEEEEEETTCEE---ECSSCEEEEEEEEETTEEESEEETTCEEEEEEESCCC-CCCT
T ss_pred cCcEEEEEEecCCeEECCeeEEEEeEEEEcCCCCc---CCCceEEEEEEEEECCcCcCCcCCCCEEEEEEECCcc-ccCC
Confidence 4677777777332 128899999999999999999 888 899999999999999999999999999999877 8999
Q ss_pred eeEEcc
Q 010278 388 GFVLSS 393 (514)
Q Consensus 388 G~vl~~ 393 (514)
|++|..
T Consensus 108 GdVLyv 113 (116)
T 1xe1_A 108 GDVLEI 113 (116)
T ss_dssp TCEEEE
T ss_pred CcEEEE
Confidence 999853
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.08 E-value=3.4e-10 Score=114.73 Aligned_cols=82 Identities=15% Similarity=0.106 Sum_probs=54.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC---
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--- 160 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~--- 160 (514)
.+|+++|.+|+|||||+++|...... .....+.|++.....+.+++
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~-------------------------------v~~~p~tTi~p~~g~v~~~~~r~ 51 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIE-------------------------------AANYPFCTIEPNTGVVPMPDPRL 51 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------------------------------------CCCCCCCCSSEEECCCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCc-------------------------------ccCCCCceECceEEEEecCCccc
Confidence 67999999999999999999542210 11112333333322333333
Q ss_pred --------------eEEEEEeCCCCcchHH-------HHHHhhhhcCEEEEEEECCC
Q 010278 161 --------------TRFTILDAPGHKSYVP-------NMISGASQADIGVLVISARK 196 (514)
Q Consensus 161 --------------~~i~liDtPGh~~f~~-------~~~~g~~~~D~ailVVda~~ 196 (514)
..+.|+||||+.++.. ..+..++.+|++++|+|+.+
T Consensus 52 ~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 52 DALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ceeeeeecccceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 5799999999987642 23445688999999999986
No 198
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.06 E-value=2.6e-10 Score=115.28 Aligned_cols=108 Identities=16% Similarity=0.185 Sum_probs=59.4
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010278 158 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 237 (514)
Q Consensus 158 ~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~ 237 (514)
..+..+.|+||||...--. .....+|++++|+|+..+.. .+ ..++.+ ..++ .++++||+|+...
T Consensus 145 ~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~---~~---~i~~~i-----~~~~-~ivvlNK~Dl~~~- 208 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDE---LQ---GIKKGI-----FELA-DMIAVNKADDGDG- 208 (337)
T ss_dssp HTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------------CCTTH-----HHHC-SEEEEECCSTTCC-
T ss_pred cCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCccc---HH---HHHHHH-----hccc-cEEEEEchhccCc-
Confidence 4678999999999754211 22468999999999865421 00 000000 1235 4677899997221
Q ss_pred chHHHHHHHHhhhhhhhhhccCc-ccCCeeEEeeccccccccccccc
Q 010278 238 WSKERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 238 ~~~~~~~~i~~~l~~~l~~~g~~-~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.........++...+..+.-. .....+++++||++|.|+.++.+
T Consensus 209 --~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~ 253 (337)
T 2qm8_A 209 --ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWS 253 (337)
T ss_dssp --HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHH
T ss_pred --hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHH
Confidence 111122223333322222100 00024789999999999998654
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.04 E-value=5.4e-10 Score=113.88 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=30.0
Q ss_pred CeEEEEEeCCCCcch-------HHHHHHhhhhcCEEEEEEECCC
Q 010278 160 TTRFTILDAPGHKSY-------VPNMISGASQADIGVLVISARK 196 (514)
Q Consensus 160 ~~~i~liDtPGh~~f-------~~~~~~g~~~~D~ailVVda~~ 196 (514)
...+.|+||||..++ .+..+..++.+|++++|+|+..
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 457999999998764 2455666889999999999986
No 200
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.03 E-value=3.7e-10 Score=119.43 Aligned_cols=65 Identities=28% Similarity=0.369 Sum_probs=42.5
Q ss_pred CCeEEEEEeCCCCcc----hHHHHHHh--hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeE-EEEEeec
Q 010278 159 ETTRFTILDAPGHKS----YVPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKL-LLVVNKM 231 (514)
Q Consensus 159 ~~~~i~liDtPGh~~----f~~~~~~g--~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~-IvviNK~ 231 (514)
.++.+.||||||... +...+... +..+|.+++||||..|. ...+.+..+... +| + +|++||+
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~---------~~~~~a~~~~~~-~~-i~gvVlNK~ 250 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ---------ACEAQAKAFKDK-VD-VASVIVTKL 250 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT---------THHHHHHHHHHH-HC-CCCEEEECT
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc---------cHHHHHHHHHhh-cC-ceEEEEeCC
Confidence 678899999999763 33333222 23799999999999872 223333333221 45 3 6899999
Q ss_pred cCC
Q 010278 232 DDH 234 (514)
Q Consensus 232 D~~ 234 (514)
|..
T Consensus 251 D~~ 253 (504)
T 2j37_W 251 DGH 253 (504)
T ss_dssp TSC
T ss_pred ccc
Confidence 984
No 201
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.99 E-value=1.7e-09 Score=107.56 Aligned_cols=161 Identities=13% Similarity=0.194 Sum_probs=73.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC--
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 159 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~-- 159 (514)
-.++|+++|+.|+|||||+++|....-..+.. +. . .|. ....++........+...
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~-~------~g~--------------~~~~t~~~~~~~~~~q~~~~ 74 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERV-IS-G------AAE--------------KIERTVQIEASTVEIEERGV 74 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC----------------------------------------------CEEEEC---C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCC-cc-c------CCc--------------ccCCcceEeeEEEEecCCCc
Confidence 34788999999999999999984321100000 00 0 000 000001111111112222
Q ss_pred CeEEEEEeCCCC-------cch---HH-------HHHHhhh----------hcCEEEEEEECCCCcccccccCCcchHHH
Q 010278 160 TTRFTILDAPGH-------KSY---VP-------NMISGAS----------QADIGVLVISARKGEFETGFEKGGQTREH 212 (514)
Q Consensus 160 ~~~i~liDtPGh-------~~f---~~-------~~~~g~~----------~~D~ailVVda~~g~~e~~~~~~~qt~e~ 212 (514)
...++++||||. +.| .. ...+.++ .+++++++++...+- +.+...+.
T Consensus 75 ~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~------Ld~~~~~~ 148 (301)
T 2qnr_A 75 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG------LKPLDVAF 148 (301)
T ss_dssp CEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSS------CCHHHHHH
T ss_pred ccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccC------CCHHHHHH
Confidence 357899999998 333 11 2222222 234566666654321 12333333
Q ss_pred HHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 213 VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 213 l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+..+. .+++ +++++||.|+.. .......++++..+++..+ ++++++||++| |+++++.
T Consensus 149 l~~l~-~~~~-iilV~~K~Dl~~----~~e~~~~~~~~~~~~~~~~------~~~~e~Sa~~~-~v~e~f~ 206 (301)
T 2qnr_A 149 MKAIH-NKVN-IVPVIAKADTLT----LKERERLKKRILDEIEEHN------IKIYHLPDAES-DEDEDFK 206 (301)
T ss_dssp HHHHT-TTSC-EEEEECCGGGSC----HHHHHHHHHHHHHHHHHTT------CCCCCCC----------CH
T ss_pred HHHHH-hcCC-EEEEEEeCCCCC----HHHHHHHHHHHHHHHHHcC------CeEEecCCccc-cccHHHH
Confidence 33332 2466 899999999832 2233344556666666654 47899999999 9998654
No 202
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.95 E-value=7.6e-10 Score=114.62 Aligned_cols=158 Identities=15% Similarity=0.169 Sum_probs=76.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC--
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 159 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~-- 159 (514)
-.+.|+++|+.|+|||||+++|.+....... .+... .+ ....+........+...
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~------------~~~~~------~~-----~~~t~~~~~i~~v~q~~~~ 86 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPE------------YPGPS------HR-----IKKTVQVEQSKVLIKEGGV 86 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCC------------CCSCC----------------CCEEEEEECC------
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCC------------CCCcc------cC-----CccceeeeeEEEEEecCCc
Confidence 3467899999999999999999532210000 00000 00 00011111111111222
Q ss_pred CeEEEEEeCCCCcchHH------HHH------------------Hh-hhh--cCEEEEEEECC-CCcccccccCCcchHH
Q 010278 160 TTRFTILDAPGHKSYVP------NMI------------------SG-ASQ--ADIGVLVISAR-KGEFETGFEKGGQTRE 211 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~------~~~------------------~g-~~~--~D~ailVVda~-~g~~e~~~~~~~qt~e 211 (514)
...++++||||...+.. .+. ++ +.. +|++|++++++ ++. .+...+
T Consensus 87 ~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L-------~~~d~~ 159 (418)
T 2qag_C 87 QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGL-------KPLDIE 159 (418)
T ss_dssp CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSC-------CHHHHH
T ss_pred ccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCC-------CHHHHH
Confidence 24689999999876532 110 01 122 44566666665 452 244445
Q ss_pred HHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 212 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 212 ~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
.+..+.. +++ +|+|+||+|+. . .......+..+...+...+ ++++.+|+.++.|+.++
T Consensus 160 ~lk~L~~-~v~-iIlVinK~Dll--~--~~ev~~~k~~i~~~~~~~~------i~~~~~sa~~~~~v~~~ 217 (418)
T 2qag_C 160 FMKRLHE-KVN-IIPLIAKADTL--T--PEECQQFKKQIMKEIQEHK------IKIYEFPETDDEEENKL 217 (418)
T ss_dssp HHHHHTT-TSE-EEEEEESTTSS--C--HHHHHHHHHHHHHHHHHHT------CCCCCCC----------
T ss_pred HHHHHhc-cCc-EEEEEEcccCc--c--HHHHHHHHHHHHHHHHHcC------CeEEeCCCCCCcCHHHH
Confidence 5555543 777 99999999983 2 3455666677777777664 46889999999888763
No 203
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.91 E-value=2e-09 Score=101.81 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=57.1
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 239 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~ 239 (514)
+..+.++|++|.-.. . ...-...+..+.|+|+..+.. ... . ....++.| .++++||+|+... .
T Consensus 118 ~~d~~~id~~g~i~~-~--~s~~~~~~~~~~v~~~~~~~~-------~~~-~---~~~~~~~~-~iiv~NK~Dl~~~--~ 180 (226)
T 2hf9_A 118 EIDLLFIENVGNLIC-P--ADFDLGTHKRIVVISTTEGDD-------TIE-K---HPGIMKTA-DLIVINKIDLADA--V 180 (226)
T ss_dssp GCSEEEEECCSCSSG-G--GGCCCSCSEEEEEEEGGGCTT-------TTT-T---CHHHHTTC-SEEEEECGGGHHH--H
T ss_pred CCCEEEEeCCCCccC-c--chhhhccCcEEEEEecCcchh-------hHh-h---hhhHhhcC-CEEEEeccccCch--h
Confidence 347899999994211 0 011134677889999755421 011 0 11224677 7899999998311 0
Q ss_pred HHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 240 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 240 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
...+++ +...++.++. ..+++++||++|.|+.++++
T Consensus 181 ~~~~~~----~~~~~~~~~~----~~~~~~~Sa~~g~gv~~l~~ 216 (226)
T 2hf9_A 181 GADIKK----MENDAKRINP----DAEVVLLSLKTMEGFDKVLE 216 (226)
T ss_dssp TCCHHH----HHHHHHHHCT----TSEEEECCTTTCTTHHHHHH
T ss_pred HHHHHH----HHHHHHHhCC----CCeEEEEEecCCCCHHHHHH
Confidence 011222 2333333321 36899999999999998654
No 204
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.82 E-value=8.7e-09 Score=103.09 Aligned_cols=135 Identities=11% Similarity=0.094 Sum_probs=84.0
Q ss_pred cccEEEeeeEEEEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECC-------CCcccccccCCcchHHHHHHHH
Q 010278 145 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR-------KGEFETGFEKGGQTREHVMLAK 217 (514)
Q Consensus 145 ~giT~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~-------~g~~e~~~~~~~qt~e~l~~~~ 217 (514)
+..|+......+..++..+.++||+|+++|.+.+....+.++++|+|+|.+ +......+ ......+..+.
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~---~es~~~~~~i~ 227 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRM---EESKALFRTII 227 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHH---HHHHHHHHHHH
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHH---HHHHHHHHHHh
Confidence 445555566778888999999999999999999988899999999999865 21100000 01222222222
Q ss_pred H----cCCCeEEEEEeeccCCCCC------------ch--HHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccc
Q 010278 218 T----LGVTKLLLVVNKMDDHTVN------------WS--KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMK 279 (514)
Q Consensus 218 ~----~~vp~~IvviNK~D~~~~~------------~~--~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~ 279 (514)
. .++| +|++.||+|+.... |. ...+++..+-+...+..+.-.....+.+..+||+++.|+.
T Consensus 228 ~~~~~~~~~-iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~ 306 (327)
T 3ohm_A 228 TYPWFQNSS-VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIR 306 (327)
T ss_dssp TSGGGTTCE-EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHH
T ss_pred hhhccCCce-EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHH
Confidence 2 2577 99999999983210 00 0122333333333333322222235778899999999998
Q ss_pred cccc
Q 010278 280 TRVD 283 (514)
Q Consensus 280 ~l~~ 283 (514)
..+.
T Consensus 307 ~vF~ 310 (327)
T 3ohm_A 307 FVFA 310 (327)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8644
No 205
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.77 E-value=8.3e-10 Score=112.94 Aligned_cols=150 Identities=15% Similarity=0.094 Sum_probs=86.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeE
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 162 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~ 162 (514)
..+|+++|.+|+|||||+|+|+...... .+........|.|.+.....+. ..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~-------------------------~~~~~~~~~~gtT~~~~~~~~~---~~ 213 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGK-------------------------GNVITTSYFPGTTLDMIEIPLE---SG 213 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHT-------------------------TCCCEEEECTTSSCEEEEEECS---TT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCC-------------------------ccceeecCCCCeEEeeEEEEeC---CC
Confidence 4689999999999999999996542100 0000122335677665544332 24
Q ss_pred EEEEeCCCCcch-------HHHHHHhh---hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010278 163 FTILDAPGHKSY-------VPNMISGA---SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 232 (514)
Q Consensus 163 i~liDtPGh~~f-------~~~~~~g~---~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D 232 (514)
+.|+||||..+. ....+..+ ...|.+++++++....+..++. .+.++...++| +++++||+|
T Consensus 214 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~-------~l~~l~~~~~~-~~~v~~k~d 285 (369)
T 3ec1_A 214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLA-------RLDYIKGGRRS-FVCYMANEL 285 (369)
T ss_dssp CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTE-------EEEEEESSSEE-EEEEECTTS
T ss_pred eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEE-------EEEEccCCCce-EEEEecCCc
Confidence 899999995321 11112222 5789999999997554432222 13334445777 999999999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
.....- .+...+.++ +.+| ..+.|.++..+.++.++
T Consensus 286 ~~~~~~----~~~~~~~~~---~~~g------~~l~p~~~~~~~~~~~l 321 (369)
T 3ec1_A 286 TVHRTK----LEKADSLYA---NQLG------ELLSPPSKRYAAEFPPL 321 (369)
T ss_dssp CEEEEE----GGGHHHHHH---HHBT------TTBCSSCGGGTTTCCCE
T ss_pred cccccc----HHHHHHHHH---HhcC------CccCCCCchhhhhccCc
Confidence 843321 112222222 2222 25677777766666554
No 206
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.73 E-value=5.4e-08 Score=97.71 Aligned_cols=88 Identities=24% Similarity=0.282 Sum_probs=60.2
Q ss_pred cccEEEeeeEEEEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCc---cccc-ccCCcchHHHHHHHHH--
Q 010278 145 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FETG-FEKGGQTREHVMLAKT-- 218 (514)
Q Consensus 145 ~giT~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~---~e~~-~~~~~qt~e~l~~~~~-- 218 (514)
+..|+......+...+..+.++||+|+++|.+.+....+.++++|+|+|.++-. .|.. ...-......+..+..
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 445666666778888999999999999999999999999999999999987210 0000 0000012222222222
Q ss_pred --cCCCeEEEEEeeccC
Q 010278 219 --LGVTKLLLVVNKMDD 233 (514)
Q Consensus 219 --~~vp~~IvviNK~D~ 233 (514)
.++| +|++.||+|+
T Consensus 225 ~~~~~p-iiLv~NK~DL 240 (340)
T 4fid_A 225 FLKGAV-KLIFLNKMDL 240 (340)
T ss_dssp GGTTSE-EEEEEECHHH
T ss_pred ccCCCe-EEEEEECchh
Confidence 3577 9999999998
No 207
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.73 E-value=3.2e-08 Score=102.18 Aligned_cols=138 Identities=13% Similarity=0.188 Sum_probs=74.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
...++++|+|+.|+|||||++.|++.. +.... . .....+.+.....+.+...+
T Consensus 40 Gei~~vaLvG~nGaGKSTLln~L~G~~--l~g~~--------------~-----------~~~~~~~~~~~i~~v~Q~~~ 92 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMDTLFNTK--FEGEP--------------A-----------THTQPGVQLQSNTYDLQESN 92 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHHHHHTSC--C--------------------------------CCSSCEEEEEEEEEEC--
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhCcc--ccCCc--------------C-----------CCCCccceEeeEEEEeecCc
Confidence 345679999999999999999995431 11000 0 00012333332222233222
Q ss_pred --eEEEEEeCCCCcch-------------HHHH----HH---hhh-------hc--C-EEEEEEECCCCcccccccCCcc
Q 010278 161 --TRFTILDAPGHKSY-------------VPNM----IS---GAS-------QA--D-IGVLVISARKGEFETGFEKGGQ 208 (514)
Q Consensus 161 --~~i~liDtPGh~~f-------------~~~~----~~---g~~-------~~--D-~ailVVda~~g~~e~~~~~~~q 208 (514)
..++++|+||.... +... +. ++. .+ | ++++|+|+.++.. ..
T Consensus 93 l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~-------~~ 165 (427)
T 2qag_B 93 VRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK-------SL 165 (427)
T ss_dssp CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C-------HH
T ss_pred cccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC-------HH
Confidence 36899999996432 1111 11 111 12 2 4677888887742 34
Q ss_pred hHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhcc
Q 010278 209 TREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 258 (514)
Q Consensus 209 t~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g 258 (514)
..+.+..+. .+++ +|+++||+|... .......+..+...|+..|
T Consensus 166 Dieilk~L~-~~~~-vI~Vi~KtD~Lt----~~E~~~l~~~I~~~L~~~g 209 (427)
T 2qag_B 166 DLVTMKKLD-SKVN-IIPIIAKADAIS----KSELTKFKIKITSELVSNG 209 (427)
T ss_dssp HHHHHHHTC-SCSE-EEEEESCGGGSC----HHHHHHHHHHHHHHHBTTB
T ss_pred HHHHHHHHh-hCCC-EEEEEcchhccc----hHHHHHHHHHHHHHHHHcC
Confidence 555555554 5677 999999999842 3445666666666555544
No 208
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.72 E-value=1.8e-09 Score=110.32 Aligned_cols=151 Identities=12% Similarity=0.101 Sum_probs=85.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCCeE
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 162 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~~~ 162 (514)
..+|+++|.+|+|||||+|+|+.....- .+ +........|.|.+.....+. ..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~-----------------~~-------~~~~~~~~~gtT~~~~~~~~~---~~ 212 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDE-----------------TE-------NVITTSHFPGTTLDLIDIPLD---EE 212 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTS-----------------CS-------SCCEEECCC----CEEEEESS---SS
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccc-----------------cc-------cceecCCCCCeecceEEEEec---CC
Confidence 3689999999999999999997653110 00 000122336677665544332 23
Q ss_pred EEEEeCCCCcch-------HHHHHHh---hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010278 163 FTILDAPGHKSY-------VPNMISG---ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 232 (514)
Q Consensus 163 i~liDtPGh~~f-------~~~~~~g---~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D 232 (514)
+.|+||||..+. ....+.. ....+..++++++....+..++.. +..+...++| +++++||+|
T Consensus 213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-------~d~l~~~~~~-~~~v~nk~d 284 (368)
T 3h2y_A 213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-------FDYVSGGRRA-FTCHFSNRL 284 (368)
T ss_dssp CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-------EEEEESSSEE-EEEEECTTS
T ss_pred eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE-------EEEecCCCce-EEEEecCcc
Confidence 899999996332 1222222 357899999999976554333221 2233445677 999999999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
..... ..+...+.++ +.+| ..+.|.++..+.++.++
T Consensus 285 ~~~~~----~~~~~~~~~~---~~~g------~~l~p~~~~~~~~~~~l 320 (368)
T 3h2y_A 285 TIHRT----KLEKADELYK---NHAG------DLLSPPTPEELENMPEL 320 (368)
T ss_dssp CEEEE----EHHHHHHHHH---HHBT------TTBCSSCHHHHHTSCCE
T ss_pred ccccc----cHHHHHHHHH---HHhC------CccCCCchhhHhhccCc
Confidence 84332 2222223222 2233 24677777766666654
No 209
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.64 E-value=3e-07 Score=94.89 Aligned_cols=157 Identities=15% Similarity=0.168 Sum_probs=88.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH----hCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEE
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFL----SGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 157 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~----~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~ 157 (514)
....++++|+.|+|||||++.|++. .|.+.- +..+..+ .++ .+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~------------------------~g~~~t~-~~~-------v~q 115 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKT------------------------GVVEVTM-ERH-------PYK 115 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCC------------------------CC----C-CCE-------EEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEE------------------------CCeecce-eEE-------ecc
Confidence 4568999999999999999999542 222110 0000000 111 122
Q ss_pred eCC-eEEEEEeCCCCcc---hHHHHHH--hhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeec
Q 010278 158 TET-TRFTILDAPGHKS---YVPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 231 (514)
Q Consensus 158 ~~~-~~i~liDtPGh~~---f~~~~~~--g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~ 231 (514)
... ..++++|+||... .....+. ++...|..++ ++...+. .|....+..+...+.| +++|+||.
T Consensus 116 ~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~--------kqrv~la~aL~~~~~p-~~lV~tkp 185 (413)
T 1tq4_A 116 HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFK--------KNDIDIAKAISMMKKE-FYFVRTKV 185 (413)
T ss_dssp CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCC--------HHHHHHHHHHHHTTCE-EEEEECCH
T ss_pred ccccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCcc--------HHHHHHHHHHHhcCCC-eEEEEecC
Confidence 222 3689999999531 2333333 3344566555 7775431 4666666677777888 99999999
Q ss_pred cCCCC-----CchHHHHHHHHhhhhhhh----hhccCcccCCeeEEeecc--ccccccccccc
Q 010278 232 DDHTV-----NWSKERYDEIESKMTPFL----KASGYNVKKDVQFLPISG--LMGLNMKTRVD 283 (514)
Q Consensus 232 D~~~~-----~~~~~~~~~i~~~l~~~l----~~~g~~~~~~~~iipiSa--~~G~gi~~l~~ 283 (514)
|+.-. ..+....+++.+.+..+. ++.|.. ...+|++|+ +.+.|++++.+
T Consensus 186 dlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~---~~~iiliSsh~l~~~~~e~L~d 245 (413)
T 1tq4_A 186 DSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA---EPPIFLLSNKNVCHYDFPVLMD 245 (413)
T ss_dssp HHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS---SCCEEECCTTCTTSTTHHHHHH
T ss_pred cccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC---CCcEEEEecCcCCccCHHHHHH
Confidence 97311 111112233344444432 333322 237899999 66667877544
No 210
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.63 E-value=3.3e-08 Score=102.83 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=60.0
Q ss_pred CCeEEEEEeCCCCcch----HHHHHH--hhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCC-CeEEEEEeec
Q 010278 159 ETTRFTILDAPGHKSY----VPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV-TKLLLVVNKM 231 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f----~~~~~~--g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~v-p~~IvviNK~ 231 (514)
.++.+.||||||.... ...+.. .+..+|.+++|+||..|. .....+.... .++ +...+++||+
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---------~~~~~~~~~~-~~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---------QAGIQAKAFK-EAVGEIGSIIVTKL 248 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---------GHHHHHHHHH-TTSCSCEEEEEECS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---------HHHHHHHHHh-hcccCCeEEEEeCC
Confidence 5678999999997653 222211 123699999999998761 2222222222 235 5367899999
Q ss_pred cCCCCCchHHHHHHHHhhhhhhhhhccCc--c---cCCeeEEeeccccccc-ccccccc
Q 010278 232 DDHTVNWSKERYDEIESKMTPFLKASGYN--V---KKDVQFLPISGLMGLN-MKTRVDK 284 (514)
Q Consensus 232 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~--~---~~~~~iipiSa~~G~g-i~~l~~~ 284 (514)
|... .. ...+ .+...+..-+..+|.. . ..-.|..++|++.|.| +..+++.
T Consensus 249 D~~~-~~-g~~l-~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~ 304 (432)
T 2v3c_C 249 DGSA-KG-GGAL-SAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEK 304 (432)
T ss_dssp SSCS-TT-HHHH-HHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSST
T ss_pred CCcc-ch-HHHH-HHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHH
Confidence 9832 11 1111 1222221111111110 0 0112345678899988 7776654
No 211
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.60 E-value=1.6e-07 Score=91.65 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=45.9
Q ss_pred hcCEEEEEEECC-CCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccC
Q 010278 184 QADIGVLVISAR-KGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 259 (514)
Q Consensus 184 ~~D~ailVVda~-~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~ 259 (514)
.++++++++|.. +| +.+...+.+..+... ++ +|+++||+|.. +.......+..+...++..+.
T Consensus 111 Ral~~lllldep~~g-------L~~lD~~~l~~L~~~-~~-vI~Vi~K~D~l----t~~e~~~~k~~i~~~l~~~~i 174 (270)
T 3sop_A 111 RVHCCLYFISPTGHS-------LRPLDLEFMKHLSKV-VN-IIPVIAKADTM----TLEEKSEFKQRVRKELEVNGI 174 (270)
T ss_dssp SCCEEEEEECCCSSS-------CCHHHHHHHHHHHTT-SE-EEEEETTGGGS----CHHHHHHHHHHHHHHHHHTTC
T ss_pred eeeeeeEEEecCCCc-------CCHHHHHHHHHHHhc-Cc-EEEEEeccccC----CHHHHHHHHHHHHHHHHHcCc
Confidence 368999999954 66 346777777777766 66 99999999983 244566677777777776654
No 212
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.60 E-value=3.8e-08 Score=100.68 Aligned_cols=85 Identities=16% Similarity=0.116 Sum_probs=49.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeC-
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 159 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~- 159 (514)
....+|+++|.+|+|||||+++|....-. .....+.|++.....+...
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~-------------------------------~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQAS-------------------------------AENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------------------------------------CCSEEEEECCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcc-------------------------------ccCCCccccCceeEEEEECC
Confidence 34578999999999999999999532110 1111333433333333222
Q ss_pred ----------------CeEEEEEeCCCCcchHH-------HHHHhhhhcCEEEEEEECCC
Q 010278 160 ----------------TTRFTILDAPGHKSYVP-------NMISGASQADIGVLVISARK 196 (514)
Q Consensus 160 ----------------~~~i~liDtPGh~~f~~-------~~~~g~~~~D~ailVVda~~ 196 (514)
...+.|+||||..++.. ..+..++.+|++++|||+.+
T Consensus 69 ~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 69 ERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp HHHHHHHHHHCCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccceeeccccCcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 23599999999887643 45566789999999999975
No 213
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.59 E-value=8.1e-08 Score=97.30 Aligned_cols=135 Identities=13% Similarity=0.148 Sum_probs=84.3
Q ss_pred cccEEEeeeEEEEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcc-------cccccCCcchHHHHHHHH
Q 010278 145 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEF-------ETGFEKGGQTREHVMLAK 217 (514)
Q Consensus 145 ~giT~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~-------e~~~~~~~qt~e~l~~~~ 217 (514)
+..|+......|..++..+.++||+|+++|.+.+......+|++|+|+|.++-.. ...+ ......+..+.
T Consensus 177 ~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~---~e~~~~~~~i~ 253 (353)
T 1cip_A 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM---HESMKLFDSIC 253 (353)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHH---HHHHHHHHHHH
T ss_pred cCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhH---HHHHHHHHHHH
Confidence 3445555556677889999999999999999999998999999999999886210 0000 12223333332
Q ss_pred H----cCCCeEEEEEeeccCCCCC------------ch-HHHHHHHHhhhhhhhhhccCc-ccCCeeEEeeccccccccc
Q 010278 218 T----LGVTKLLLVVNKMDDHTVN------------WS-KERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMK 279 (514)
Q Consensus 218 ~----~~vp~~IvviNK~D~~~~~------------~~-~~~~~~i~~~l~~~l~~~g~~-~~~~~~iipiSa~~G~gi~ 279 (514)
. .++| +|++.||+|+.... |. ...+++..+.+...+..+... ....+.++.+||++|.|+.
T Consensus 254 ~~~~~~~~p-iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~ 332 (353)
T 1cip_A 254 NNKWFTDTS-IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQ 332 (353)
T ss_dssp TCGGGTTSE-EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHH
T ss_pred cCccccCCc-EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHH
Confidence 2 3577 99999999983100 00 011223333333222222110 0135789999999999999
Q ss_pred cccc
Q 010278 280 TRVD 283 (514)
Q Consensus 280 ~l~~ 283 (514)
++++
T Consensus 333 ~vF~ 336 (353)
T 1cip_A 333 FVFD 336 (353)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 214
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.53 E-value=5.3e-07 Score=93.45 Aligned_cols=96 Identities=20% Similarity=0.211 Sum_probs=55.1
Q ss_pred CCeEEEEEeCCCCcch----HHHH--HHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010278 159 ETTRFTILDAPGHKSY----VPNM--ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 232 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f----~~~~--~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D 232 (514)
.++.+.||||||.... ...+ +..+..+|.++||+||..| ......+..... .++-..|++||+|
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g---------q~a~~~a~~f~~-~~~i~gVIlTKlD 250 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG---------QQAYNQALAFKE-ATPIGSIIVTKLD 250 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG---------GGHHHHHHHHHH-SCTTEEEEEECCS
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc---------hhHHHHHHHHHh-hCCCeEEEEECCC
Confidence 4578999999995332 2211 1223468999999999876 123333333332 2332468999999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
.... ...+.+ +.... ..|+..++. |++++++.
T Consensus 251 ~~~~------gG~~ls----~~~~~------g~PI~fig~--Ge~vddL~ 282 (443)
T 3dm5_A 251 GSAK------GGGALS----AVAAT------GAPIKFIGT--GEKIDDIE 282 (443)
T ss_dssp SCSS------HHHHHH----HHHTT------CCCEEEEEC--SSSTTCEE
T ss_pred Cccc------ccHHHH----HHHHH------CCCEEEEEc--CCChHHhh
Confidence 8321 111111 12222 357777774 99997753
No 215
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.46 E-value=2.2e-07 Score=94.38 Aligned_cols=138 Identities=11% Similarity=0.148 Sum_probs=75.5
Q ss_pred cccEEEeeeEEEEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCc---cccc-ccCCcchHHHHHHHHH--
Q 010278 145 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FETG-FEKGGQTREHVMLAKT-- 218 (514)
Q Consensus 145 ~giT~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~---~e~~-~~~~~qt~e~l~~~~~-- 218 (514)
+..|+......|..++..+.++||+|++.|.+.+......++++|+|+|.+.-. .|.. ...-......+..+..
T Consensus 185 r~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~ 264 (362)
T 1zcb_A 185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 264 (362)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred cCCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch
Confidence 334554555667788999999999999999998888889999999999998621 0000 0000012223332222
Q ss_pred --cCCCeEEEEEeeccCCCCC------------c--hHHHHHHHHhhhhhhhhhccCcc-cCCeeEEeeccccccccccc
Q 010278 219 --LGVTKLLLVVNKMDDHTVN------------W--SKERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 219 --~~vp~~IvviNK~D~~~~~------------~--~~~~~~~i~~~l~~~l~~~g~~~-~~~~~iipiSa~~G~gi~~l 281 (514)
.++| +|+++||+|+.... | ....+++..+-+...+..+.-.. ...+.++.+||++|.|+.++
T Consensus 265 ~~~~~p-iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~v 343 (362)
T 1zcb_A 265 VFSNVS-IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLV 343 (362)
T ss_dssp GGTTSE-EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHH
T ss_pred hhCCCC-EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHH
Confidence 3577 99999999983100 0 00112333332222222211100 12468899999999999986
Q ss_pred cc
Q 010278 282 VD 283 (514)
Q Consensus 282 ~~ 283 (514)
++
T Consensus 344 F~ 345 (362)
T 1zcb_A 344 FR 345 (362)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 216
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.42 E-value=1.8e-06 Score=89.42 Aligned_cols=94 Identities=18% Similarity=0.197 Sum_probs=55.8
Q ss_pred CCeEEEEEeCCCCcc------hHHHHHH--hhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-HcCCCeEEEEEe
Q 010278 159 ETTRFTILDAPGHKS------YVPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVN 229 (514)
Q Consensus 159 ~~~~i~liDtPGh~~------f~~~~~~--g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~-~~~vp~~IvviN 229 (514)
.++.+.||||||... ++..+.. .+..+|.++||+||..| ......+.... ..++ ..|++|
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g---------q~a~~~a~~f~~~~~~--~gVIlT 246 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG---------QKAYDLASRFHQASPI--GSVIIT 246 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG---------GGGHHHHHHHHHHCSS--EEEEEE
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc---------hHHHHHHHHHhcccCC--cEEEEe
Confidence 467899999999644 3333322 22357999999999876 13333333333 3343 467999
Q ss_pred eccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 230 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 230 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
|+|.. .. .....+. .... ..|+..++. |++++++
T Consensus 247 KlD~~-a~-----~G~als~----~~~~------g~Pi~fig~--Ge~v~dL 280 (433)
T 3kl4_A 247 KMDGT-AK-----GGGALSA----VVAT------GATIKFIGT--GEKIDEL 280 (433)
T ss_dssp CGGGC-SC-----HHHHHHH----HHHH------TCEEEEEEC--CSSSSCE
T ss_pred ccccc-cc-----chHHHHH----HHHH------CCCEEEEEC--CCChHhC
Confidence 99973 21 1122221 1122 357777775 8888654
No 217
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.39 E-value=2e-06 Score=84.99 Aligned_cols=96 Identities=19% Similarity=0.193 Sum_probs=57.3
Q ss_pred CCeEEEEEeCCCCcc--hHHHHH------HhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEee
Q 010278 159 ETTRFTILDAPGHKS--YVPNMI------SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 230 (514)
Q Consensus 159 ~~~~i~liDtPGh~~--f~~~~~------~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK 230 (514)
.++.+.||||||... .-..+. ..+..+|.+++|+|+..+ .+..+.+..... .++-..+++||
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---------~~~~~~~~~~~~-~~~i~gvVlnk 248 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---------QKAYDLASKFNQ-ASKIGTIIITK 248 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---------GGHHHHHHHHHH-TCTTEEEEEEC
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---------HHHHHHHHHHHh-hCCCCEEEEeC
Confidence 577899999999766 322222 234579999999999754 234444433332 35535679999
Q ss_pred ccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 231 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 231 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
+|.. .. ...+. .+....+ .|+..++ +|++++++.
T Consensus 249 ~D~~-~~-----~g~~~----~~~~~~~------~pi~~i~--~Ge~v~dl~ 282 (297)
T 1j8m_F 249 MDGT-AK-----GGGAL----SAVAATG------ATIKFIG--TGEKIDELE 282 (297)
T ss_dssp GGGC-TT-----HHHHH----HHHHTTT------CCEEEEE--CSSSTTCEE
T ss_pred CCCC-cc-----hHHHH----HHHHHHC------cCEEEEe--CCCChhhcc
Confidence 9972 11 11111 2233332 4666665 688887653
No 218
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.33 E-value=7.8e-07 Score=91.11 Aligned_cols=86 Identities=19% Similarity=0.113 Sum_probs=57.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+...|+++|++|+|||||+++|....... .....+.|++.....+...+
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~------------------------------~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGN------------------------------PANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTS------------------------------TTCCSSCCCCTTEEEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccc------------------------------ccCCCceeecceeeeeeeCC
Confidence 345789999999999999999995422100 11123344444333333333
Q ss_pred -----------------eEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCC
Q 010278 161 -----------------TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 196 (514)
Q Consensus 161 -----------------~~i~liDtPGh~~-------f~~~~~~g~~~~D~ailVVda~~ 196 (514)
..+.++|+||... +.......++.+|.+++|+|+..
T Consensus 68 ~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 68 ERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp HHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cchhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4689999999533 34456666789999999999865
No 219
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.26 E-value=4.8e-07 Score=89.75 Aligned_cols=102 Identities=15% Similarity=0.125 Sum_probs=69.1
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHH
Q 010278 162 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 241 (514)
Q Consensus 162 ~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~ 241 (514)
.+.++|+ +++|....-..++.+|++|+|+|++...+ .+ ....+.+..+...++| +|+|+||+|+ .+ ..
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~--s~---~~l~~~l~~~~~~~~p-iilv~NK~DL--~~--~~ 131 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPET--ST---YIIDKFLVLAEKNELE-TVMVINKMDL--YD--ED 131 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCC--CH---HHHHHHHHHHHHTTCE-EEEEECCGGG--CC--HH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCC--CH---HHHHHHHHHHHHCCCC-EEEEEeHHHc--CC--ch
Confidence 7899999 88887666667889999999999987531 00 1233344455567888 8999999999 32 11
Q ss_pred HHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 242 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 242 ~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.. +++..+++.++- . .+++++||++|.|+.+++.
T Consensus 132 ~v----~~~~~~~~~~~~---~-~~~~~~SAktg~gv~~lf~ 165 (301)
T 1u0l_A 132 DL----RKVRELEEIYSG---L-YPIVKTSAKTGMGIEELKE 165 (301)
T ss_dssp HH----HHHHHHHHHHTT---T-SCEEECCTTTCTTHHHHHH
T ss_pred hH----HHHHHHHHHHhh---h-CcEEEEECCCCcCHHHHHH
Confidence 11 223333333320 1 4799999999999998653
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.20 E-value=2.6e-06 Score=83.63 Aligned_cols=95 Identities=17% Similarity=0.176 Sum_probs=59.3
Q ss_pred EEeCCCCc-chHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHH
Q 010278 165 ILDAPGHK-SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERY 243 (514)
Q Consensus 165 liDtPGh~-~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~ 243 (514)
+-+.|||. +..+++...+..+|+++.|+||..+.. .... .+.... .+.| .++++||+|+ .+ ....
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~-------~~~~-~l~~~l-~~kp-~ilVlNK~DL--~~--~~~~ 68 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMS-------SRNP-MIEDIL-KNKP-RIMLLNKADK--AD--AAVT 68 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTT-------TSCH-HHHHHC-SSSC-EEEEEECGGG--SC--HHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCc-------cCCH-HHHHHH-CCCC-EEEEEECccc--CC--HHHH
Confidence 45679997 567788888999999999999998743 1111 111111 3556 8899999999 43 1122
Q ss_pred HHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 244 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 244 ~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+....+++..| .+++++||.+|.|+.++.+
T Consensus 69 ----~~~~~~~~~~g------~~~i~iSA~~~~gi~~L~~ 98 (282)
T 1puj_A 69 ----QQWKEHFENQG------IRSLSINSVNGQGLNQIVP 98 (282)
T ss_dssp ----HHHHHHHHTTT------CCEEECCTTTCTTGGGHHH
T ss_pred ----HHHHHHHHhcC------CcEEEEECCCcccHHHHHH
Confidence 22233344333 4789999999999998654
No 221
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.19 E-value=4.3e-06 Score=85.77 Aligned_cols=85 Identities=14% Similarity=0.176 Sum_probs=59.5
Q ss_pred cccEEEeeeEEEEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCC--c-cc----ccccCCcchHHHHHHHH
Q 010278 145 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG--E-FE----TGFEKGGQTREHVMLAK 217 (514)
Q Consensus 145 ~giT~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g--~-~e----~~~~~~~qt~e~l~~~~ 217 (514)
+..|+.+....|..++..+.|+||+|+++|.+.+......++++|+|+|.+.- + .| ..| ......+..+.
T Consensus 201 r~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~---~e~~~~~~~i~ 277 (402)
T 1azs_C 201 RVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRL---QEALNLFKSIW 277 (402)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHH---HHHHHHHHHHH
T ss_pred ccceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchH---HHHHHHHHHHH
Confidence 33355455566777889999999999999999998889999999999999861 0 00 001 02222333332
Q ss_pred H----cCCCeEEEEEeeccC
Q 010278 218 T----LGVTKLLLVVNKMDD 233 (514)
Q Consensus 218 ~----~~vp~~IvviNK~D~ 233 (514)
. .++| +|++.||+|+
T Consensus 278 ~~~~~~~~p-iiLvgNK~DL 296 (402)
T 1azs_C 278 NNRWLRTIS-VILFLNKQDL 296 (402)
T ss_dssp TCTTCSSCC-EEEEEECHHH
T ss_pred hcccCCCCe-EEEEEEChhh
Confidence 2 2577 9999999998
No 222
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.15 E-value=1.1e-06 Score=94.46 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=23.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHH
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
..+..+|+|+|.+|+|||||+|+|++
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g 60 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAG 60 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTT
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcC
Confidence 45678999999999999999999954
No 223
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.14 E-value=1.9e-06 Score=87.19 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=53.1
Q ss_pred cEEEeeeEEEEe------CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCC-------CcccccccCCcchHHHH
Q 010278 147 KTVEVGRAHFET------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK-------GEFETGFEKGGQTREHV 213 (514)
Q Consensus 147 iT~~~~~~~~~~------~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~-------g~~e~~~~~~~qt~e~l 213 (514)
.|..+....|.. ....+.|+||+|+++|.+.+....+.+|++|+|+|.+. ......+ ......+
T Consensus 163 ~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~---~~~~~~~ 239 (354)
T 2xtz_A 163 RTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRM---METKELF 239 (354)
T ss_dssp CCCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHH---HHHHHHH
T ss_pred cccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHH---HHHHHHH
Confidence 343334444554 34689999999999999999888899999999999861 1000000 0222223
Q ss_pred HHHHH----cCCCeEEEEEeeccC
Q 010278 214 MLAKT----LGVTKLLLVVNKMDD 233 (514)
Q Consensus 214 ~~~~~----~~vp~~IvviNK~D~ 233 (514)
..+.. .++| +|++.||+|+
T Consensus 240 ~~i~~~~~~~~~p-iiLvgNK~DL 262 (354)
T 2xtz_A 240 DWVLKQPCFEKTS-FMLFLNKFDI 262 (354)
T ss_dssp HHHHTCGGGSSCE-EEEEEECHHH
T ss_pred HHHHhccccCCCe-EEEEEECcch
Confidence 22322 3577 9999999997
No 224
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.09 E-value=1e-05 Score=80.93 Aligned_cols=93 Identities=12% Similarity=0.178 Sum_probs=55.3
Q ss_pred CeEEEEEeCCCCcch----HHHHHH--hhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-HcCCCeEEEEEeecc
Q 010278 160 TTRFTILDAPGHKSY----VPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMD 232 (514)
Q Consensus 160 ~~~i~liDtPGh~~f----~~~~~~--g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~-~~~vp~~IvviNK~D 232 (514)
++.+.++||+|.... +..+.. .+-.+|-.++|+|+..+ .+..+.+.... ..++. ++++||+|
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---------~~~~~~~~~~~~~~~it--~iilTKlD 279 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---------NAIVEQARQFNEAVKID--GIILTKLD 279 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---------THHHHHHHHHHHHSCCC--EEEEECGG
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---------HHHHHHHHHHHHhcCCC--EEEEeCcC
Confidence 456778999996432 222211 12358999999998876 24444444443 45665 57899999
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 233 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 233 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
.. ..+. .+. .++...+ .|+..++ +|++++++
T Consensus 280 ~~-a~~G-----~~l----~~~~~~~------~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 280 AD-ARGG-----AAL----SISYVID------APILFVG--VGQGYDDL 310 (328)
T ss_dssp GC-SCCH-----HHH----HHHHHHT------CCEEEEE--CSSSTTCE
T ss_pred Cc-cchh-----HHH----HHHHHHC------CCEEEEe--CCCCcccc
Confidence 73 2211 111 2223333 4777777 78888765
No 225
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.08 E-value=5.8e-06 Score=85.95 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=40.4
Q ss_pred CCeEEEEEeCCCCcchHHHHHH------hhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-HcCCCeEEEEEeec
Q 010278 159 ETTRFTILDAPGHKSYVPNMIS------GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 231 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~------g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~-~~~vp~~IvviNK~ 231 (514)
.++.+.||||||...+...... .+..+|.+++|+|+..|. .....+.... ..++. -|++||+
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---------~~~~~~~~f~~~l~i~--gvVlnK~ 250 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---------DAANTAKAFNEALPLT--GVVLTKV 250 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---------THHHHHHHHHHHSCCC--CEEEECT
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---------HHHHHHHHHhccCCCe--EEEEecC
Confidence 5788999999997554222222 234789999999998661 2222222222 23433 3689999
Q ss_pred cC
Q 010278 232 DD 233 (514)
Q Consensus 232 D~ 233 (514)
|.
T Consensus 251 D~ 252 (433)
T 2xxa_A 251 DG 252 (433)
T ss_dssp TS
T ss_pred CC
Confidence 97
No 226
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.98 E-value=4.7e-06 Score=81.70 Aligned_cols=59 Identities=22% Similarity=0.242 Sum_probs=35.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEeCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 160 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~~~ 160 (514)
.+.++|+++|.+|+|||||+|+|+...... .....|.|.+.....+ +
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~------------------------------~~~~~g~T~~~~~~~~---~ 164 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAK------------------------------TGDRPGITTSQQWVKV---G 164 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------------------------------------CCEEE---T
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceee------------------------------cCCCCCeeeeeEEEEe---C
Confidence 456899999999999999999995322110 1223566665543332 4
Q ss_pred eEEEEEeCCCCc
Q 010278 161 TRFTILDAPGHK 172 (514)
Q Consensus 161 ~~i~liDtPGh~ 172 (514)
..+.|+||||..
T Consensus 165 ~~~~l~DtpG~~ 176 (282)
T 1puj_A 165 KELELLDTPGIL 176 (282)
T ss_dssp TTEEEEECCCCC
T ss_pred CCEEEEECcCcC
Confidence 579999999964
No 227
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.94 E-value=8.6e-06 Score=80.66 Aligned_cols=87 Identities=20% Similarity=0.255 Sum_probs=58.7
Q ss_pred HhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccC
Q 010278 180 SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 259 (514)
Q Consensus 180 ~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~ 259 (514)
..++.+|.+|+|+|++++.+. + ....+.+..+...++| +|+|+||+|+ .+ +..++ ...++..+++..|
T Consensus 75 ~~~~naD~vliV~d~~~p~~s--~---~~l~~~l~~~~~~~~~-~ilV~NK~DL--~~--~~~v~-~~~~~~~~~~~~g- 142 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFN--N---YLLDNMLVVYEYFKVE-PVIVFNKIDL--LN--EEEKK-ELERWISIYRDAG- 142 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCC--H---HHHHHHHHHHHHTTCE-EEEEECCGGG--CC--HHHHH-HHHHHHHHHHHTT-
T ss_pred HHHHhcCEEEEEEECCCCCCC--H---HHHHHHHHHHHhCCCC-EEEEEEcccC--CC--ccccH-HHHHHHHHHHHCC-
Confidence 357899999999999976421 0 1234555566678888 8899999999 33 11111 1223334444444
Q ss_pred cccCCeeEEeeccccccccccccc
Q 010278 260 NVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 260 ~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.+++++||++|.|++++.+
T Consensus 143 -----~~~~~~SA~~g~gi~~L~~ 161 (302)
T 2yv5_A 143 -----YDVLKVSAKTGEGIDELVD 161 (302)
T ss_dssp -----CEEEECCTTTCTTHHHHHH
T ss_pred -----CeEEEEECCCCCCHHHHHh
Confidence 4799999999999998754
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.79 E-value=3.8e-05 Score=74.35 Aligned_cols=87 Identities=16% Similarity=0.108 Sum_probs=54.9
Q ss_pred CCCcch-HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHH
Q 010278 169 PGHKSY-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIE 247 (514)
Q Consensus 169 PGh~~f-~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~ 247 (514)
|||... .+.+...+..+|++|.|+||..+..... +.. + ++ +.| .|+++||+|+ ++ ....
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~----~~l-~---ll---~k~-~iivlNK~DL--~~--~~~~---- 64 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSA----YGV-D---FS---RKE-TIILLNKVDI--AD--EKTT---- 64 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSC----TTS-C---CT---TSE-EEEEEECGGG--SC--HHHH----
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcC----hHH-H---hc---CCC-cEEEEECccC--CC--HHHH----
Confidence 899766 4567777899999999999998754211 111 1 11 777 7899999999 43 1222
Q ss_pred hhhhhhhhhccCcccCCeeEEeecccccccccccc
Q 010278 248 SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 248 ~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~ 282 (514)
+....++++.| .++ ++||.+|.|+.++.
T Consensus 65 ~~~~~~~~~~g------~~v-~iSa~~~~gi~~L~ 92 (262)
T 3cnl_A 65 KKWVEFFKKQG------KRV-ITTHKGEPRKVLLK 92 (262)
T ss_dssp HHHHHHHHHTT------CCE-EECCTTSCHHHHHH
T ss_pred HHHHHHHHHcC------CeE-EEECCCCcCHHHHH
Confidence 22233444444 356 99999999998754
No 229
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.73 E-value=6e-05 Score=76.74 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=63.3
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHH
Q 010278 163 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 242 (514)
Q Consensus 163 i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~ 242 (514)
+.-+++| +++|.+........+|++|+|+|+.+... . ......+.+ .+.| +++|+||+|+...+. .
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s--~~~~l~~~l-----~~~p-iilV~NK~DLl~~~~---~ 116 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNG--S--FIPGLPRFA-----ADNP-ILLVGNKADLLPRSV---K 116 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGG--G--CCSSHHHHC-----TTSC-EEEEEECGGGSCTTC---C
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCC--c--hhhHHHHHh-----CCCC-EEEEEEChhcCCCcc---C
Confidence 3344554 67887776665688999999999987532 1 112222221 2566 889999999943221 1
Q ss_pred HHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 243 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 243 ~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
.+.+.+.+..+++..|+. ..+++++||++|.|+.++.+
T Consensus 117 ~~~~~~~l~~~~~~~g~~---~~~v~~iSA~~g~gi~~L~~ 154 (369)
T 3ec1_A 117 YPKLLRWMRRMAEELGLC---PVDVCLVSAAKGIGMAKVME 154 (369)
T ss_dssp HHHHHHHHHHHHHTTTCC---CSEEEECBTTTTBTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC---cccEEEEECCCCCCHHHHHH
Confidence 233444555566777763 23789999999999988644
No 230
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.73 E-value=4.6e-05 Score=79.79 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
+.-.++|+|..|||||||++.|.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 3458999999999999999998654
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.70 E-value=4.2e-05 Score=75.70 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=58.2
Q ss_pred hhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCc
Q 010278 181 GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 260 (514)
Q Consensus 181 g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~ 260 (514)
.+..+|.+++|+|+..+.+. .....+.+..+...+++ .++|+||+|+ .+.. ..++..+.+..+++..|+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~-----~~~i~r~L~~~~~~~~~-~vivlnK~DL--~~~~--~~~~~~~~~~~~y~~~g~- 151 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFS-----TALLDRFLVLVEANDIQ-PIICITKMDL--IEDQ--DTEDTIQAYAEDYRNIGY- 151 (307)
T ss_dssp TEECCCEEEEEEESTTTTCC-----HHHHHHHHHHHHTTTCE-EEEEEECGGG--CCCH--HHHHHHHHHHHHHHHHTC-
T ss_pred HHHhCCEEEEEEeCCCCCCC-----HHHHHHHHHHHHHCCCC-EEEEEECCcc--Cchh--hhHHHHHHHHHHHHhCCC-
Confidence 47899999999999987652 11233344445567888 7899999999 4311 111122334445555554
Q ss_pred ccCCeeEEeeccccccccccccc
Q 010278 261 VKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 261 ~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+++++||.+|.|+.++.+
T Consensus 152 -----~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 152 -----DVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp -----CEEECCHHHHTTCTTTGG
T ss_pred -----eEEEEecCCCCCHHHHHh
Confidence 689999999999987644
No 232
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.69 E-value=4.7e-05 Score=77.50 Aligned_cols=98 Identities=15% Similarity=0.072 Sum_probs=61.8
Q ss_pred CCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhh
Q 010278 170 GHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESK 249 (514)
Q Consensus 170 Gh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~ 249 (514)
..++|.+......+.+|++|+|+|+.+... .+ .....+. ..+.| +++|+||+|+..... ..+.+.+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~~--~~--~~~l~~~-----~~~~p-~ilV~NK~DL~~~~~---~~~~~~~~ 121 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFNG--SW--LPGLHRF-----VGNNK-VLLVGNKADLIPKSV---KHDKVKHW 121 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHHH--HC--CTTHHHH-----SSSSC-EEEEEECGGGSCTTS---CHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCcc--cH--HHHHHHH-----hCCCc-EEEEEEChhcCCccc---CHHHHHHH
Confidence 356777766665667889999999986311 11 1122221 12667 889999999943221 12334444
Q ss_pred hhhhhhhccCcccCCeeEEeeccccccccccccc
Q 010278 250 MTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 283 (514)
Q Consensus 250 l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~ 283 (514)
+..+++..|+. ..+++.+||++|.|+.++.+
T Consensus 122 l~~~~~~~g~~---~~~v~~iSA~~g~gi~~L~~ 152 (368)
T 3h2y_A 122 MRYSAKQLGLK---PEDVFLISAAKGQGIAELAD 152 (368)
T ss_dssp HHHHHHHTTCC---CSEEEECCTTTCTTHHHHHH
T ss_pred HHHHHHHcCCC---cccEEEEeCCCCcCHHHHHh
Confidence 55556666653 23789999999999998644
No 233
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.63 E-value=0.00011 Score=72.71 Aligned_cols=64 Identities=20% Similarity=0.270 Sum_probs=39.6
Q ss_pred CeEEEEEeCCCCcchHHHHHHh------------hhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-HHcCCCeEEE
Q 010278 160 TTRFTILDAPGHKSYVPNMISG------------ASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLGVTKLLL 226 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g------------~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~-~~~~vp~~Iv 226 (514)
++.+.++||+|........... +..++.++|++|+..+ .+..+.+... ...++. +|
T Consensus 184 ~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~---------~~~~~~~~~~~~~~~~t--~i 252 (304)
T 1rj9_A 184 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG---------QNGLEQAKKFHEAVGLT--GV 252 (304)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC---------THHHHHHHHHHHHHCCS--EE
T ss_pred CCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHH---------HHHHHHHHHHHHHcCCc--EE
Confidence 3456799999964332211111 1348989999999876 2344444333 345776 57
Q ss_pred EEeeccCC
Q 010278 227 VVNKMDDH 234 (514)
Q Consensus 227 viNK~D~~ 234 (514)
++||.|..
T Consensus 253 ivTh~d~~ 260 (304)
T 1rj9_A 253 IVTKLDGT 260 (304)
T ss_dssp EEECTTSS
T ss_pred EEECCccc
Confidence 89999973
No 234
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=97.61 E-value=6.4e-05 Score=60.46 Aligned_cols=77 Identities=16% Similarity=0.273 Sum_probs=66.2
Q ss_pred EEEEEEE--ccCCeEEEEEEeeeeeecCCEEEEecCC---cEEEEEEEEECCeeeeecCCCCeEEEEccCCCcccceeee
Q 010278 315 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 389 (514)
Q Consensus 315 ~~i~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~---~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~~i~~G~ 389 (514)
..|.++| +..|+++..+|.+|.++.+..+++...+ ...++.||.++..++.++..|.-|++.|.+. .+++.||
T Consensus 9 AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~~~--~dik~GD 86 (99)
T 1d1n_A 9 AEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKNF--NDIKEGD 86 (99)
T ss_dssp EEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTTC--SSCSSCS
T ss_pred EEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEEEcCc--CCCCCCC
Confidence 3445556 3579999999999999999999999988 4568999999999999999999999999966 4799999
Q ss_pred EEcc
Q 010278 390 VLSS 393 (514)
Q Consensus 390 vl~~ 393 (514)
+|-.
T Consensus 87 ~Ie~ 90 (99)
T 1d1n_A 87 VIEA 90 (99)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9843
No 235
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.61 E-value=0.00014 Score=78.94 Aligned_cols=65 Identities=20% Similarity=0.307 Sum_probs=39.7
Q ss_pred CeEEEEEeCCCCcc------------hHHHHHHh-hhh-cCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCC
Q 010278 160 TTRFTILDAPGHKS------------YVPNMISG-ASQ-ADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVT 222 (514)
Q Consensus 160 ~~~i~liDtPGh~~------------f~~~~~~g-~~~-~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~vp 222 (514)
...++|+|.||... -+..++.. +.. ..+++++++++... .+.+.+.++.. .|.+
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~---------a~~~~l~la~~v~~~g~r 216 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDI---------ATTEALSMAQEVDPEGDR 216 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCT---------TTCHHHHHHHHHCSSCCS
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchh---------ccHHHHHHHHHHhhcCCc
Confidence 45799999998432 23344444 233 36777777776542 23344455544 4667
Q ss_pred eEEEEEeeccCC
Q 010278 223 KLLLVVNKMDDH 234 (514)
Q Consensus 223 ~~IvviNK~D~~ 234 (514)
.|+|+||+|+.
T Consensus 217 -tI~VlTK~Dlv 227 (608)
T 3szr_A 217 -TIGILTKPDLV 227 (608)
T ss_dssp -EEEEEECGGGS
T ss_pred -eEEEecchhhc
Confidence 78999999994
No 236
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.53 E-value=0.00016 Score=66.82 Aligned_cols=94 Identities=11% Similarity=0.020 Sum_probs=56.9
Q ss_pred CCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHH----HHHHH----cCCCeEEEEEeec-cCCCCCchH
Q 010278 170 GHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV----MLAKT----LGVTKLLLVVNKM-DDHTVNWSK 240 (514)
Q Consensus 170 Gh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l----~~~~~----~~vp~~IvviNK~-D~~~~~~~~ 240 (514)
|+.++...+-.....+|++|+|||+++... ...++-+ .++.. .++| ++|+.||. |++.+- +
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R-------~eak~EL~eL~~mL~ee~~L~gap-LLVlANKqqDlp~Am-s- 180 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKR-------HEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRM-P- 180 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCC-------CCHHHHHHHHHHHSCTTSSCSCSC-EEEEEEESSTTSCBC-C-
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhH-------HHHHHHHHHHHHHhcchhhhCCCe-EEEEeCCCcCccCCC-C-
Confidence 777777777777789999999999987532 1244433 12211 3688 88999995 675432 2
Q ss_pred HHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 241 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 241 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
..++.+.+. |..+. ..+.+.++||++|+|+.+-
T Consensus 181 --~~EI~e~L~--L~~l~----R~W~Iq~csA~TGeGL~EG 213 (227)
T 3l82_B 181 --CFYLAHELH--LNLLN----HPWLVQDTEAETLTGFLNG 213 (227)
T ss_dssp --HHHHHHHTT--GGGGC----SCEEEEEEETTTCTTHHHH
T ss_pred --HHHHHHHcC--CcCCC----CCEEEEEeECCCCcCHHHH
Confidence 234444443 22222 3678999999999999874
No 237
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.52 E-value=3.1e-05 Score=74.95 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
.+++++|.+|+|||||+|+|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~ 121 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKG 121 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred hheEEeCCCCCCHHHHHHHHhc
Confidence 6899999999999999999953
No 238
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.51 E-value=0.00026 Score=58.90 Aligned_cols=78 Identities=12% Similarity=0.198 Sum_probs=67.1
Q ss_pred eEEEEEEEc--cCCe---EEEEEEeeeeeecCCEEEEecCCc---EEEEEEEEECCeeeeecCCCCeEEEEccCCCcc-c
Q 010278 314 RMPIIDKFK--DMGT---VVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEE-D 384 (514)
Q Consensus 314 ~~~i~~~~~--~~G~---v~~g~v~sG~l~~gd~v~~~p~~~---~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~~~-~ 384 (514)
+..|.++|+ ..|+ ++..+|.+|.|+.+..+++...+. ..++.||.++..++.++..|.-|++.|.+. + |
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi~l~~f--niD 89 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLDEE--KVE 89 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEEECSCT--TSC
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEEEEccC--CCC
Confidence 466777773 4577 899999999999999999999883 568999999999999999999999999865 4 6
Q ss_pred ceeeeEEcc
Q 010278 385 ILSGFVLSS 393 (514)
Q Consensus 385 i~~G~vl~~ 393 (514)
++.||+|-.
T Consensus 90 ik~GDiIE~ 98 (120)
T 2crv_A 90 FKPGDQVIC 98 (120)
T ss_dssp CCTTEEEEE
T ss_pred CCCCCEEEE
Confidence 999999854
No 239
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.49 E-value=0.00021 Score=70.74 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=22.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
.+...|+++|.+|+||||++..|...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 34568999999999999999988654
No 240
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.40 E-value=0.00022 Score=70.28 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
+...|+++|+.|+||||++..|..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
No 241
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.38 E-value=0.00018 Score=74.38 Aligned_cols=64 Identities=22% Similarity=0.300 Sum_probs=39.0
Q ss_pred CCeEEEEEeCCCCcch----HHHHH--HhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-HcCCCeEEEEEeec
Q 010278 159 ETTRFTILDAPGHKSY----VPNMI--SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 231 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f----~~~~~--~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~-~~~vp~~IvviNK~ 231 (514)
.++.+.||||||.... +..+. ..+..+|.++||+|+..+ ......+.... ..++ .-|++||+
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---------q~av~~a~~f~~~l~i--~GVIlTKl 247 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---------QEALSVARAFDEKVGV--TGLVLTKL 247 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---------THHHHHHHHHHHHTCC--CEEEEESG
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---------HHHHHHHHHHHhcCCc--eEEEEeCc
Confidence 5678999999996433 22221 123369999999999754 12222222222 2343 35689999
Q ss_pred cC
Q 010278 232 DD 233 (514)
Q Consensus 232 D~ 233 (514)
|.
T Consensus 248 D~ 249 (425)
T 2ffh_A 248 DG 249 (425)
T ss_dssp GG
T ss_pred CC
Confidence 97
No 242
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.36 E-value=0.0011 Score=65.99 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=22.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
.+...|+++|..|+||||++..|.+.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988553
No 243
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.16 E-value=0.0016 Score=59.72 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=46.7
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcC-----CCeEEEEEeeccC
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG-----VTKLLLVVNKMDD 233 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~-----vp~~IvviNK~D~ 233 (514)
..+.+.|||||+... ......+..+|.+|+++.+.... ..+...+..+...+ ++ +.+++||+|.
T Consensus 74 ~~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~-~~vv~N~~~~ 142 (206)
T 4dzz_A 74 ADYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--------FSAAGSVVTVLEAQAYSRKVE-ARFLITRKIE 142 (206)
T ss_dssp TTSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--------HHHHHHHHHHHTTSCGGGCCE-EEEEECSBCT
T ss_pred CCCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--------HHHHHHHHHHHHHHHhCCCCc-EEEEEeccCC
Confidence 357899999999763 34455677899999999987642 24555666666553 45 6889999996
No 244
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.09 E-value=0.0014 Score=67.97 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=24.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHH
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
..+...|+|+|.+++|||||+|+|++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 457788999999999999999999865
No 245
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.07 E-value=0.0016 Score=68.66 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=72.6
Q ss_pred CCCCCCCCCceEEEEEEEc--cCCeEEEEEEeeeeeecCCEEEEecCC---cEEEEEEEEECCeeeeecCCCCeEEEEcc
Q 010278 304 ITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCDDNRVRHAGPGENLRIRLS 378 (514)
Q Consensus 304 ~~~~~~~~p~~~~i~~~~~--~~G~v~~g~v~sG~l~~gd~v~~~p~~---~~~~V~si~~~~~~v~~a~aG~~v~~~l~ 378 (514)
.|.....---...|..+|+ ..|.++.++|..|.|+.|..+++...+ ...++.||++++++++++..|+-|++.+.
T Consensus 400 ~~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~e~~~g~ecgi~~~ 479 (501)
T 1zo1_I 400 SPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVK 479 (501)
T ss_dssp STTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEESEEETTCCEEEEBC
T ss_pred CceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCccccEECCCCEEEEEEc
Confidence 3333333334556778884 459999999999999999999998776 47899999999999999999999999999
Q ss_pred CCCcccceeeeEEccC
Q 010278 379 GIEEEDILSGFVLSSV 394 (514)
Q Consensus 379 ~~~~~~i~~G~vl~~~ 394 (514)
+. .+++.||+|-..
T Consensus 480 ~~--~~~~~gd~~~~~ 493 (501)
T 1zo1_I 480 NY--NDVRTGDVIEVF 493 (501)
T ss_dssp CC--TTCCTTCEEEEC
T ss_pred Cc--CCCCCCCEEEEE
Confidence 76 479999998543
No 246
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.02 E-value=0.001 Score=64.46 Aligned_cols=96 Identities=10% Similarity=0.013 Sum_probs=61.3
Q ss_pred CCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHH----HHH---H-HcCCCeEEEEEee-ccCCCCCc
Q 010278 168 APGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV----MLA---K-TLGVTKLLLVVNK-MDDHTVNW 238 (514)
Q Consensus 168 tPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l----~~~---~-~~~vp~~IvviNK-~D~~~~~~ 238 (514)
..|+.++....-.....+|++|+|||+++..- . ..++-+ .++ . ..++| ++|+.|| -|++++-
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreR-----l--eak~EL~eL~~mL~e~~~l~~ap-LLVfANKkQDlp~Am- 264 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR-----H--EWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRM- 264 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCC-----C--CHHHHHHHHHHHHCHHHHCTTCC-EEEEEEESSTTSCBC-
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhH-----H--HHHHHHHHHHHHhcchhhcCCCe-EEEEeCCcccccCCC-
Confidence 35778887777777889999999999987532 1 133322 222 1 14788 8889997 5885442
Q ss_pred hHHHHHHHHhhhhhhhhhccCcccCCeeEEeeccccccccccc
Q 010278 239 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 281 (514)
Q Consensus 239 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l 281 (514)
+ ..++.+.+. |..+. ....+.++||++|+|+.+-
T Consensus 265 s---~~EI~e~L~--L~~l~----r~W~Iq~csA~tGeGL~EG 298 (312)
T 3l2o_B 265 P---CFYLAHELH--LNLLN----HPWLVQDTEAETLTGFLNG 298 (312)
T ss_dssp C---HHHHHHHTT--GGGGC----SCEEEEEEETTTCTTHHHH
T ss_pred C---HHHHHHHcC--CccCC----CcEEEEecccCCCcCHHHH
Confidence 2 234444443 22221 3578999999999999874
No 247
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.00 E-value=0.00091 Score=67.40 Aligned_cols=83 Identities=27% Similarity=0.250 Sum_probs=52.3
Q ss_pred hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcc
Q 010278 182 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 261 (514)
Q Consensus 182 ~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~ 261 (514)
+..+|.+++| +|..+.+ + .....+.+..+...+++ .|+|+||+|+ .+ ....+. .+.....+..+|+
T Consensus 128 ~anvD~v~iv-~a~~P~~----~-~~~i~r~L~~a~~~~~~-~iivlNK~DL--~~--~~~~~~-~~~~~~~y~~~G~-- 193 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPEL----S-LNIIDRYLVGCETLQVE-PLIVLNKIDL--LD--DEGMDF-VNEQMDIYRNIGY-- 193 (358)
T ss_dssp EECCCEEEEE-EESTTTC----C-HHHHHHHHHHHHHHTCE-EEEEEECGGG--CC--HHHHHH-HHHHHHHHHTTTC--
T ss_pred HhcCCEEEEE-EeCCCCC----C-HHHHHHHHHHHHhcCCC-EEEEEECccC--CC--chhHHH-HHHHHHHHHhCCC--
Confidence 5789999976 5555432 1 11233444555667988 7899999999 43 111111 2233334555654
Q ss_pred cCCeeEEeecccccccccccc
Q 010278 262 KKDVQFLPISGLMGLNMKTRV 282 (514)
Q Consensus 262 ~~~~~iipiSa~~G~gi~~l~ 282 (514)
+++++||.+|.|+.++.
T Consensus 194 ----~v~~~Sa~~~~gl~~L~ 210 (358)
T 2rcn_A 194 ----RVLMVSSHTQDGLKPLE 210 (358)
T ss_dssp ----CEEECBTTTTBTHHHHH
T ss_pred ----cEEEEecCCCcCHHHHH
Confidence 68999999999998754
No 248
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.82 E-value=0.0028 Score=62.46 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=22.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
.+.-.++++|+.|||||||++.|.+.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998654
No 249
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.80 E-value=0.0026 Score=62.44 Aligned_cols=64 Identities=23% Similarity=0.300 Sum_probs=38.0
Q ss_pred CCeEEEEEeCCCCcch----HHHHHHh--hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-HcCCCeEEEEEeec
Q 010278 159 ETTRFTILDAPGHKSY----VPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 231 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f----~~~~~~g--~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~-~~~vp~~IvviNK~ 231 (514)
.++.+.|+||||.... +..+... ...+|.+++|+|+..+ ....+.+.... ..++. -+++||+
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~---------~~~~~~~~~~~~~~~i~--givlnk~ 247 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---------QEALSVARAFDEKVGVT--GLVLTKL 247 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---------HHHHHHHHHHHHHTCCC--EEEEECG
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc---------HHHHHHHHHHhhcCCCC--EEEEECC
Confidence 4678999999985422 2222111 1258999999998754 12333332222 23433 4689999
Q ss_pred cC
Q 010278 232 DD 233 (514)
Q Consensus 232 D~ 233 (514)
|.
T Consensus 248 d~ 249 (295)
T 1ls1_A 248 DG 249 (295)
T ss_dssp GG
T ss_pred CC
Confidence 97
No 250
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.77 E-value=0.0046 Score=57.28 Aligned_cols=65 Identities=8% Similarity=0.075 Sum_probs=47.2
Q ss_pred CCeEEEEEeCCCC-cchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-CCCeEEEEEeeccC
Q 010278 159 ETTRFTILDAPGH-KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMDD 233 (514)
Q Consensus 159 ~~~~i~liDtPGh-~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~-~vp~~IvviNK~D~ 233 (514)
..+.+.|||||+. ... .+...+..+|.+|+++.+..... ..+...+..+... +.+ +.+++|++|.
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~-------~~~~~~~~~l~~~~~~~-~~vv~N~~~~ 132 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALAL-------DALMLTIETLQKLGNNR-FRILLTIIPP 132 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHH-------HHHHHHHHHHHHTCSSS-EEEEECSBCC
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhH-------HHHHHHHHHHHhccCCC-EEEEEEecCC
Confidence 4578999999997 443 23345678999999999875432 2455666666664 666 8899999997
No 251
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.68 E-value=0.003 Score=63.75 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=22.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
.+.-.++++|..|||||||++.|.+.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 34568999999999999999998654
No 252
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.61 E-value=0.0058 Score=64.90 Aligned_cols=178 Identities=12% Similarity=0.125 Sum_probs=120.9
Q ss_pred EeCCCCcchHHHHHHhhhh-cCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe-eccCCCCCchHHHH
Q 010278 166 LDAPGHKSYVPNMISGASQ-ADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKERY 243 (514)
Q Consensus 166 iDtPGh~~f~~~~~~g~~~-~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviN-K~D~~~~~~~~~~~ 243 (514)
-|+-|.-.-+...+..+.. -.+-+-|+.+.-| +-|+..+.++...+- +|+..| +.|.
T Consensus 346 ~d~~Gs~ea~~~~l~~~~~~~~~~~~i~~~~vG---------~i~~~Dv~~a~~~~a--~i~~fnv~~~~---------- 404 (537)
T 3izy_P 346 GDVDGSVEAILNVMDTYDASHECELDLVHFGVG---------DISENDVNLAETFHG--VIYGFNVNAGN---------- 404 (537)
T ss_dssp BCCHHHHHHHHHHHHHCCCCSSCCCCBSCCCBS---------CBCHHHHHHHHHHSC--CEEESSCCBCH----------
T ss_pred eCCcchHHHHHHHHHhcCCCCcEEEEEEEecCC---------CCCHHHHHHHHhcCC--eEEEecCCCCH----------
Confidence 4788876667777776654 4566777777766 578888888888774 566776 2221
Q ss_pred HHHHhhhhhhhhhccCcccCCeeEEeeccccccccccccccCCCCCCCcccHHHHhhhccCCCCCCCCCceEEEEEEEc-
Q 010278 244 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK- 322 (514)
Q Consensus 244 ~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~G~gi~~l~~~~~~~w~~g~tL~~~l~~l~~~~~~~~~p~~~~i~~~~~- 322 (514)
..+...++.|. .+..-+ =|-++++. +.+.+..+-.|.....-.-++.|..+|+
T Consensus 405 -----~~~~~a~~~~v------~i~~~~-----iiy~l~~~----------~~~~~~~~l~~~~~e~~~g~a~v~~~f~~ 458 (537)
T 3izy_P 405 -----VIQQLAAKKGV------KIKLHK-----IIYRLIED----------LQEELSSRLPCIVEEHPIGEASILATFSI 458 (537)
T ss_dssp -----HHHHHHHHHTC------CCBCSC-----SSCCSHHH----------HHHHHSSSSSCSSSCCCSSEEEEEEEESS
T ss_pred -----HHHHHHHHcCC------eEEEeC-----hHHHHHHH----------HHHHHHhccCCceEEEEEEEEEEcCcEEE
Confidence 11112222222 221111 12222221 4445555545554444556888888884
Q ss_pred --c--CCeEEEEEEeeeeeecCCEEEEecCC---cEEEEEEEEECCeeeeecCCCCeEEEEccC-CCcccceeeeEEc
Q 010278 323 --D--MGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCDDNRVRHAGPGENLRIRLSG-IEEEDILSGFVLS 392 (514)
Q Consensus 323 --~--~G~v~~g~v~sG~l~~gd~v~~~p~~---~~~~V~si~~~~~~v~~a~aG~~v~~~l~~-~~~~~i~~G~vl~ 392 (514)
+ .|+++.++|..|.|+.|..+++...+ ...++.||.++.+++.++..|.-|++.+.+ . .+++.||+|-
T Consensus 459 ~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~~--~~~~~gd~ie 534 (537)
T 3izy_P 459 TEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLKHHKDDTSVVKTGMDCGLSLDEEK--IEFKVGDAII 534 (537)
T ss_dssp CSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCCCSSCCCSEEETTCEEEEESSSSC--SSCSCCCEEE
T ss_pred CCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhcccCcccceEcCCCEEEEEEcCcc--cCCCCCCEEE
Confidence 2 57899999999999999999999877 467888999999999999999999999997 5 4799999973
No 253
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.47 E-value=0.011 Score=63.68 Aligned_cols=83 Identities=17% Similarity=0.218 Sum_probs=68.1
Q ss_pred CCceEEEE--EEEc-cCCeEEEEEEeeeeeecCCEEEEecCC-cEEEEEEEEECCeeeeecCCCCeEEEEccCCC-cccc
Q 010278 311 GPFRMPII--DKFK-DMGTVVMGKVESGSVREGDSLLVMPNK-AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIE-EEDI 385 (514)
Q Consensus 311 ~p~~~~i~--~~~~-~~G~v~~g~v~sG~l~~gd~v~~~p~~-~~~~V~si~~~~~~v~~a~aG~~v~~~l~~~~-~~~i 385 (514)
.|..+.|. .+|+ ..|.++.++|..|.|+.|..+.+ +.+ ...+|.||++++++++++..|+-|++.+.+.. ..++
T Consensus 462 ~~~~~~i~~~~~f~~~~~~i~g~~v~~G~~~~~~~~~~-~~~~~~g~i~sl~~~k~~v~~~~~g~e~gi~~~~~~~~~~~ 540 (594)
T 1g7s_A 462 KPASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPLMN-DDGETVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGKTI 540 (594)
T ss_dssp CCEEEEEEEEEEEECSSSEEEEEEEEEEEEETTCEEEC-TTSCEEEEEEEEEETTEEESEEETTCCEEEEEETCCBTTTB
T ss_pred eeEEEEEecceEEcCCCCeEEEEEEecCEEecCCeEEe-cCCcEEEEEehhcccCccccccCCCCEEEEEEeCcccCCCC
Confidence 45566555 5773 45899999999999999999998 444 67899999999999999999999999998742 2578
Q ss_pred eeeeEEccC
Q 010278 386 LSGFVLSSV 394 (514)
Q Consensus 386 ~~G~vl~~~ 394 (514)
+.||+|-..
T Consensus 541 ~~~d~~~~~ 549 (594)
T 1g7s_A 541 HEGDTLYVD 549 (594)
T ss_dssp CTTCEEEEC
T ss_pred CCCCEEEEE
Confidence 999998653
No 254
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.88 E-value=0.0016 Score=64.31 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
-..++++|++|+|||||+|.|+.
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHhcc
Confidence 35899999999999999999954
No 255
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.56 E-value=0.018 Score=54.15 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=47.3
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcC--CCeEEEEEeeccC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVNKMDD 233 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~--vp~~IvviNK~D~ 233 (514)
.+.+.|||||+.... .....+..+|.+|+|+.+..... ..+...+..+...+ .+.+-+++|++|.
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~v~N~~~~ 184 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSL-------RRAGQLLKLCKEFEKPISRIEIILNRADT 184 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHH-------HHHHHHHHHHHTCSSCCSCEEEEEESTTS
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHH-------HHHHHHHHHHHHhCCCccceEEEEecCCC
Confidence 467999999986543 33445778999999999875432 25566667777776 4457889999996
No 256
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.51 E-value=0.017 Score=56.65 Aligned_cols=67 Identities=16% Similarity=0.127 Sum_probs=43.2
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccC
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 233 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~vp~~IvviNK~D~ 233 (514)
..+.+.|||||+..... .+...+..+|.+|+|+.+..... ..+...+..+.. .+++.+-+++||++.
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSI-------YAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHH-------HHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHH-------HHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 35789999999864422 12234678999999998764321 234444555554 345533389999995
No 257
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.28 E-value=0.013 Score=57.55 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll 104 (514)
..++++|+.|+|||||+|.|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999996
No 258
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.14 E-value=0.11 Score=53.59 Aligned_cols=137 Identities=15% Similarity=0.102 Sum_probs=70.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEEEEe-
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 158 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~~~~- 158 (514)
..+...|+|+|...+|||+|+|.|+...+...... -+ ...+.....+.| .....-...||-+-........
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~--w~----~~~~~~~~gF~~--~~~~~~~TkGIWmw~~p~~~~~~ 135 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVD--WV----GDYNEPLTGFSW--RGGSERETTGIQIWSEIFLINKP 135 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTT--TT----CCTTCCCCSSCC--CCSSSCCCCSEEEESSCEEEECT
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccc--cc----cccccCCCCcee--CCCCCCcCceEEEecCcccccCC
Confidence 45778899999999999999998864331100000 00 000000001111 1111222355544433333332
Q ss_pred --CCeEEEEEeCCCCcch-----HHHHHHhhh--hcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc----------
Q 010278 159 --ETTRFTILDAPGHKSY-----VPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---------- 219 (514)
Q Consensus 159 --~~~~i~liDtPGh~~f-----~~~~~~g~~--~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~---------- 219 (514)
.+..+.|+||.|.-+- ....+.++. .+++.|+=+... +..+..++|.+...+
T Consensus 136 ~g~~~~vlllDTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~~~~---------i~~~~L~~L~~~tel~~~i~~~~~~ 206 (457)
T 4ido_A 136 DGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQN---------VQEDDLQHLQLFTEYGRLAMEETFL 206 (457)
T ss_dssp TSCEEEEEEEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEEESS---------CCHHHHHHHHHHHHHHHHHSCCCSS
T ss_pred CCCeeEEEEEeccCCCCcccCccccHHHHHHHHHHhhheeeccccc---------CCHHHHHHHHHHHHHHHHHhhhccc
Confidence 2356999999995433 223344433 567766665543 224666666554432
Q ss_pred -CCCeEEEEEeeccC
Q 010278 220 -GVTKLLLVVNKMDD 233 (514)
Q Consensus 220 -~vp~~IvviNK~D~ 233 (514)
-.|++++++--+-+
T Consensus 207 ~~Fp~f~wlvRDf~l 221 (457)
T 4ido_A 207 KPFQSLIFLVRDWSF 221 (457)
T ss_dssp CSEEEEEEEEETCCC
T ss_pred ccCCceEEEEecCCc
Confidence 14577877755544
No 259
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.93 E-value=0.014 Score=52.56 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
+++++|+.|+|||||++.|....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999996554
No 260
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.46 E-value=0.018 Score=52.79 Aligned_cols=23 Identities=35% Similarity=0.284 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
..++|+|+.|||||||++.|+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999654
No 261
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.43 E-value=0.024 Score=50.88 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
..++++|+.|||||||++.|+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999999764
No 262
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.41 E-value=0.026 Score=51.95 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=22.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
.+...|+|+|++|||||||++.|...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999988654
No 263
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.31 E-value=0.027 Score=51.68 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=22.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhC
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
+...|+|+|+.|||||||++.|....+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446799999999999999999976543
No 264
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.29 E-value=0.015 Score=60.78 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=21.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
.....|.++|.+++||||+..+|...
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 45578999999999999999998543
No 265
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.16 E-value=0.037 Score=49.06 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=23.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
+...|+++|.+|||||||...|....|.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 3457999999999999999998765554
No 266
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.11 E-value=0.026 Score=51.84 Aligned_cols=25 Identities=28% Similarity=0.082 Sum_probs=21.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHh
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
--.++++|+.|||||||++.|....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3479999999999999999996543
No 267
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.11 E-value=0.084 Score=50.32 Aligned_cols=68 Identities=15% Similarity=0.062 Sum_probs=47.1
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
..+.+.|||||+...........+..+|.+|+|+.+..... ..+.+.+..++..+++.+-+++|++|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTA-------VIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCH-------HHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchH-------HHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 56789999999865432222222346899999998876532 245666777777888833389999984
No 268
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.09 E-value=0.032 Score=50.88 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=23.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
+...|+++|.+|||||||+..|....|.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 4568999999999999999999776664
No 269
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.06 E-value=0.029 Score=49.59 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
.+|+++|.+|||||||...|....+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999766553
No 270
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.04 E-value=0.055 Score=50.72 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=49.4
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 158 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 158 ~~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
...+.+.|||||+.... .....+..+|.+|+|+.+..... ..+...+.++..++++.+.+++||++.
T Consensus 129 ~~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 129 LDKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSI-------KTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp HTCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHH-------HHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred cCCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHH-------HHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 35678999999986544 23345688999999999875432 245556667778888778899999994
No 271
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.02 E-value=0.033 Score=50.68 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=20.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
..++++|+.|||||||++.|....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 469999999999999999996543
No 272
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.95 E-value=0.027 Score=50.81 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
..++++|+.|||||||++.|+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999654
No 273
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=93.93 E-value=0.065 Score=49.96 Aligned_cols=65 Identities=18% Similarity=0.265 Sum_probs=48.9
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
.+.+.|||+|+... ......+..+|.+|+|+.+..... ..+...+..+...+.+.+-+++||+|.
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~vv~N~~~~ 175 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCL-------TDTMKVGIVLKKAGLAILGFVLNRYGR 175 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHH-------HHHHHHHHHHHHTTCEEEEEEEEEETS
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccH-------HHHHHHHHHHHhCCCceEEEEEecCCc
Confidence 46799999998654 344556788999999999875432 245666677777787767789999996
No 274
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.89 E-value=0.032 Score=50.16 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
...|+++|.+|||||||++.|...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 357999999999999999998543
No 275
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.79 E-value=0.032 Score=49.71 Aligned_cols=21 Identities=38% Similarity=0.434 Sum_probs=18.6
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll 104 (514)
-.++++|++|||||||++.++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 468999999999999999753
No 276
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.75 E-value=0.041 Score=50.44 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHh
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
.+...|+|+|+.|+|||||+++|+...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 345679999999999999999997654
No 277
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.70 E-value=0.039 Score=48.38 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=21.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
..|+++|.+||||||+...| ...|.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~ 26 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGA 26 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCC
Confidence 47999999999999999999 65554
No 278
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.68 E-value=0.043 Score=51.83 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=23.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCc
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQV 110 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~i 110 (514)
...|+|+|.+|||||||++.|....|..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4689999999999999999997655654
No 279
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.59 E-value=0.035 Score=51.64 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=21.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHh
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
--.++|+|+.|||||||++.|....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3569999999999999999996543
No 280
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=93.58 E-value=0.079 Score=50.31 Aligned_cols=65 Identities=23% Similarity=0.322 Sum_probs=48.3
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
.+.+.|||+|+... ......+..+|.+|+|+.+..... ..+...+..+...+.+.+-+++|++|.
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~vv~N~~~~ 174 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSI-------TDGLKTKIVAERLGTKVLGVVVNRITT 174 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHH-------HHHHHHHHHHHHHTCEEEEEEEEEECT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHH-------HHHHHHHHHHHhcCCCeeEEEEccCCc
Confidence 57799999998654 344556788999999998775422 245566666777787767789999996
No 281
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.54 E-value=0.045 Score=48.10 Aligned_cols=25 Identities=16% Similarity=-0.028 Sum_probs=21.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
..|+++|.+||||||+...|....|
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999966554
No 282
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.52 E-value=0.043 Score=49.89 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
...|+++|.+|||||||++.|...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999998543
No 283
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.51 E-value=0.043 Score=50.47 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHh
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
+...|+++|++|||||||++.|+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34579999999999999999996543
No 284
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.46 E-value=0.043 Score=48.39 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=21.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHh
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
+--.++++|+.|||||||++.|....
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34579999999999999999986543
No 285
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.42 E-value=0.045 Score=49.86 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
...|+|+|.+|||||||...|....|.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457999999999999999999766553
No 286
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=93.40 E-value=0.14 Score=49.66 Aligned_cols=66 Identities=8% Similarity=0.081 Sum_probs=50.0
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
.+.+.|||||..-..... ...+..+|.+|+|+.+..... ....+.+..+...|++.+-+|+||+|.
T Consensus 201 ~yD~VIIDtpp~~~~~da-~~l~~~aD~vllVv~~~~~~~-------~~~~~~~~~l~~~g~~~~GvVlN~v~~ 266 (286)
T 3la6_A 201 NYDLVLIDTPPILAVTDA-AIVGRHVGTTLMVARYAVNTL-------KEVETSLSRFEQNGIPVKGVILNSIFR 266 (286)
T ss_dssp HCSEEEEECCCTTTCTHH-HHHTTTCSEEEEEEETTTSBH-------HHHHHHHHHHHHTTCCCCEEEEEEECC
T ss_pred CCCEEEEcCCCCcchHHH-HHHHHHCCeEEEEEeCCCCcH-------HHHHHHHHHHHhCCCCEEEEEEcCccc
Confidence 356999999997554332 233578999999999886533 366677788888888867789999997
No 287
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.35 E-value=0.053 Score=48.66 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=23.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
++..|+++|.++|||||+...|....|.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3568999999999999999998766653
No 288
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.33 E-value=0.053 Score=51.22 Aligned_cols=28 Identities=36% Similarity=0.406 Sum_probs=23.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
+...|+|+|..|||||||++.|....|.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 4467999999999999999999776664
No 289
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.31 E-value=0.04 Score=55.37 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
-.++++|++|+|||||+|.|+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 4799999999999999999954
No 290
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.28 E-value=0.048 Score=50.82 Aligned_cols=26 Identities=19% Similarity=0.078 Sum_probs=22.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHh
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
+-..++|+|+.|||||||++.|+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34579999999999999999997653
No 291
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.25 E-value=0.053 Score=48.61 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
...++++|..|+|||||+++|+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 46799999999999999999964
No 292
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.22 E-value=0.063 Score=48.19 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=23.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
+...|.++|.+||||||+...|....|.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3468999999999999999999665553
No 293
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.16 E-value=0.053 Score=50.16 Aligned_cols=25 Identities=20% Similarity=0.056 Sum_probs=22.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
.+|+|+|.+||||||+.+.|....|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999976655
No 294
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.14 E-value=0.065 Score=47.89 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=22.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
...|+++|.+||||||+...|....|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~ 30 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGF 30 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457999999999999999999765553
No 295
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.13 E-value=0.062 Score=53.14 Aligned_cols=29 Identities=31% Similarity=0.250 Sum_probs=24.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
.+++..|+|+|.+|||||||++.|....+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45678999999999999999999866543
No 296
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.06 E-value=0.048 Score=50.98 Aligned_cols=21 Identities=33% Similarity=0.142 Sum_probs=18.9
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll 104 (514)
-.++++|+.|||||||++.|.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999883
No 297
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.03 E-value=0.048 Score=49.06 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
..++++|.+|||||||++.|...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 36899999999999999999653
No 298
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.02 E-value=0.047 Score=51.50 Aligned_cols=22 Identities=32% Similarity=0.182 Sum_probs=19.5
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll 104 (514)
--.++|+|+.|||||||++.|.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 3469999999999999999884
No 299
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.01 E-value=0.048 Score=50.42 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
-.++++|+.|||||||++.|..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999854
No 300
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.98 E-value=0.053 Score=48.02 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
..|.++|.+||||||+...|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999854
No 301
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.92 E-value=0.063 Score=47.88 Aligned_cols=24 Identities=17% Similarity=0.052 Sum_probs=20.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
+...++++|..|||||||+.+|+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999854
No 302
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.91 E-value=0.052 Score=53.29 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=22.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
.+--.++|+|+.|+|||||++.|+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 34457999999999999999999654
No 303
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.89 E-value=0.066 Score=52.79 Aligned_cols=28 Identities=29% Similarity=0.243 Sum_probs=23.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHh
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
..+...|+|+|+.|||||||++.|....
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 3456789999999999999999886643
No 304
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.89 E-value=0.051 Score=51.43 Aligned_cols=22 Identities=32% Similarity=0.175 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
-.++++|+.|||||||++.|.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999843
No 305
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.84 E-value=0.056 Score=49.42 Aligned_cols=26 Identities=27% Similarity=0.184 Sum_probs=22.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHh
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
+...|+++|.+|||||||++.|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44679999999999999999996554
No 306
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.84 E-value=0.071 Score=47.94 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=23.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
+...|+++|.+||||||+...|....|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4568999999999999999999766553
No 307
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.84 E-value=0.066 Score=48.42 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=21.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
.|+++|.+||||||+...|....+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 6899999999999999999765553
No 308
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.83 E-value=0.067 Score=47.77 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=23.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
..+|+++|.+||||||+...|....|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999766553
No 309
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.83 E-value=0.048 Score=51.51 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll 104 (514)
-.++|+|+.|||||||++.|.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 469999999999999999883
No 310
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.80 E-value=0.07 Score=48.54 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=23.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
+..+|+++|.+||||||+...|....|.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3458999999999999999999766553
No 311
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.74 E-value=0.05 Score=51.06 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll 104 (514)
-.++|+|+.|||||||++.|.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999883
No 312
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.73 E-value=0.077 Score=48.32 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=23.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
...|++.|.+||||||+...|....+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 468999999999999999999765543
No 313
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.73 E-value=0.07 Score=49.31 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=23.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
++..+|+++|.+||||||+...|....+.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 34578999999999999999999766654
No 314
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.70 E-value=0.057 Score=49.08 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 010278 85 NVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
.++++|+.|+|||||++.|...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999988543
No 315
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.68 E-value=0.068 Score=48.62 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=20.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
.+|+|+|.+||||||+.+.|.. .|
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TT
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CC
Confidence 3799999999999999999866 44
No 316
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.68 E-value=0.061 Score=51.55 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
+--.++++|+.|||||||++.|+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 345799999999999999999854
No 317
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.60 E-value=0.076 Score=50.37 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=23.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
..+...|+|.|.++|||||+...|....|
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34567899999999999999999876556
No 318
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.60 E-value=0.053 Score=51.85 Aligned_cols=21 Identities=33% Similarity=0.246 Sum_probs=19.1
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll 104 (514)
-.++++|+.|||||||++.|.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 469999999999999999984
No 319
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.55 E-value=0.064 Score=48.92 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
..|+++|.+||||||+...|.. .|.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~ 27 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGV 27 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTC
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCC
Confidence 5799999999999999999855 443
No 320
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.54 E-value=0.08 Score=46.87 Aligned_cols=25 Identities=20% Similarity=0.112 Sum_probs=21.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
..|.++|.+||||||+...|....+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999966544
No 321
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.54 E-value=0.072 Score=48.20 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
.+...|+|+|.+||||||+...|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999988665
No 322
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.53 E-value=0.083 Score=51.48 Aligned_cols=27 Identities=41% Similarity=0.348 Sum_probs=22.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHH
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
..++..|+|+|.+|||||||++.|...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 446788999999999999999988544
No 323
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.51 E-value=0.079 Score=48.38 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=22.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
.+...|+|+|.+|||||||++.|...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999998654
No 324
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.50 E-value=0.086 Score=47.90 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=24.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
.+...|+++|.+||||||+...|....|.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 45578999999999999999999766664
No 325
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.48 E-value=0.062 Score=51.12 Aligned_cols=22 Identities=32% Similarity=0.253 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
-.++|+|+.|||||||++.|.+
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999999854
No 326
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.47 E-value=0.056 Score=51.34 Aligned_cols=22 Identities=27% Similarity=0.228 Sum_probs=19.4
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
-.++|+|+.|||||||++.|.+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999998843
No 327
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.46 E-value=0.091 Score=47.74 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=24.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
..+...|+++|.++|||||+...|....|.
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~ 46 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGI 46 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 455678999999999999999999765553
No 328
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.43 E-value=0.057 Score=52.23 Aligned_cols=21 Identities=24% Similarity=0.126 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll 104 (514)
-.++|+|+.|||||||++.|.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999884
No 329
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.40 E-value=0.063 Score=50.83 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=19.1
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll 104 (514)
-.++|+|+.|||||||++.|.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 479999999999999999984
No 330
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.38 E-value=0.058 Score=51.66 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
-.++|+|+.|||||||++.|.+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999843
No 331
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.36 E-value=0.07 Score=47.70 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=22.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhC
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
...|++.|.+||||||+...|....+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999976554
No 332
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=92.36 E-value=0.22 Score=47.92 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=47.9
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
.+.+.|||||+...... ....+..+|.+|+|+.+..... ....+.+..+...+++.+-+++|++|.
T Consensus 191 ~yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~~~~-------~~~~~~~~~l~~~~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSENNNK-------DEVKKGKELIEATGAKLLGVVLNRMPK 256 (271)
T ss_dssp HCSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTSCCH-------HHHHHHHHHHHTTTCEEEEEEEEEECC
T ss_pred CCCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCCCcH-------HHHHHHHHHHHhCCCCEEEEEEeCCcC
Confidence 36699999999654432 2223467999999999886533 356666777777888844489999997
No 333
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.35 E-value=0.039 Score=49.38 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
..++|+|..|||||||+..|+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999854
No 334
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.34 E-value=0.11 Score=46.51 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=23.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
...|+++|.+||||||+...|....|.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 32 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGW 32 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999998766553
No 335
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.33 E-value=0.066 Score=51.51 Aligned_cols=22 Identities=36% Similarity=0.238 Sum_probs=19.5
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll 104 (514)
--.++++|+.|||||||++.|.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 3469999999999999999884
No 336
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.33 E-value=0.09 Score=47.83 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=22.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHh
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
.+...|+++|.+|||||||...|....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999885443
No 337
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=92.33 E-value=0.3 Score=46.19 Aligned_cols=66 Identities=18% Similarity=0.148 Sum_probs=42.4
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH------cCCCeEEEEEeecc
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMD 232 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~------~~vp~~IvviNK~D 232 (514)
..+.+.|||||+..... ....+..+|.+|+|+.+..... ..+...+..+.. .+++.+-+++|++|
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~ 180 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEYYAL-------EGVAGLLATLEEVRAGLNPRLRLLGILVTMYD 180 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESSTHHH-------HHHHHHHHHHHHHHHHTCTTCEEEEEEEESBC
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCchHHH-------HHHHHHHHHHHHHHHHhCCCceEEEEEEEeEC
Confidence 56789999999975543 3345678999999999875322 122333333332 24552248999999
Q ss_pred C
Q 010278 233 D 233 (514)
Q Consensus 233 ~ 233 (514)
.
T Consensus 181 ~ 181 (257)
T 1wcv_1 181 G 181 (257)
T ss_dssp T
T ss_pred C
Confidence 6
No 338
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.32 E-value=0.065 Score=51.40 Aligned_cols=21 Identities=33% Similarity=0.208 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll 104 (514)
-.++|+|+.|||||||++.|.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999883
No 339
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.31 E-value=0.083 Score=48.52 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=21.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
+|+|+|.+||||||+...|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999766664
No 340
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.26 E-value=0.067 Score=50.54 Aligned_cols=21 Identities=43% Similarity=0.414 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll 104 (514)
-.++++|+.|||||||++.|.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 469999999999999999884
No 341
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.26 E-value=0.093 Score=49.54 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=24.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
+++.+|+++|.+||||||+...|....|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46689999999999999999999766554
No 342
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.23 E-value=0.1 Score=46.86 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
+..+|+++|.+||||||+...|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999998665
No 343
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.21 E-value=0.33 Score=49.73 Aligned_cols=27 Identities=33% Similarity=0.219 Sum_probs=22.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHH
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
...+..|.++|.+||||||+..+|...
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 345578999999999999999998543
No 344
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.20 E-value=0.077 Score=47.83 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=23.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
+...|+++|.+||||||+...|....|.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~ 38 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGF 38 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3468999999999999999999766653
No 345
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.19 E-value=0.061 Score=49.98 Aligned_cols=21 Identities=33% Similarity=0.197 Sum_probs=18.8
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll 104 (514)
-.++++|+.|||||||++.|.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999883
No 346
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.15 E-value=0.065 Score=51.00 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll 104 (514)
-.++++|+.|||||||++.|.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 468999999999999999884
No 347
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.15 E-value=0.065 Score=51.23 Aligned_cols=21 Identities=38% Similarity=0.222 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll 104 (514)
-.++|+|+.|||||||++.|.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 469999999999999999884
No 348
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.14 E-value=0.083 Score=47.24 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=21.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
..|++.|.+||||||+...|....+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999976544
No 349
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.12 E-value=0.072 Score=51.22 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
-.++|+|+.|||||||++.|.+
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999844
No 350
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.12 E-value=0.091 Score=49.90 Aligned_cols=28 Identities=18% Similarity=-0.021 Sum_probs=23.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
+...|+|+|..|||||||+..|....|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3468999999999999999999765564
No 351
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.07 E-value=0.072 Score=51.12 Aligned_cols=22 Identities=36% Similarity=0.222 Sum_probs=19.4
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll 104 (514)
--.++|+|+.|||||||++.|.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEEcCCCCcHHHHHHHHH
Confidence 3468999999999999999883
No 352
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.06 E-value=0.1 Score=51.15 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=23.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
.+...|+|+|..|||||||++.|....+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4457899999999999999999876543
No 353
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.02 E-value=0.073 Score=52.12 Aligned_cols=22 Identities=23% Similarity=0.063 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
..++++|+.|+|||||++.|..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHST
T ss_pred CeEEEECCCCCcHHHHHHHhcc
Confidence 4789999999999999999954
No 354
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.02 E-value=0.097 Score=46.88 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=21.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
++...|+++|.+||||||+...|...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988543
No 355
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.01 E-value=0.085 Score=48.14 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
+...|++.|.+||||||+...|...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998654
No 356
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.01 E-value=0.069 Score=51.51 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll 104 (514)
-.++|+|+.|||||||++.|.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999884
No 357
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.99 E-value=0.095 Score=48.70 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=23.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
+...|+++|.+||||||+...|....|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 33 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFEL 33 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3468999999999999999999766654
No 358
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.98 E-value=0.087 Score=48.61 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=20.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
--.++|+|++|||||||+..|..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999854
No 359
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.96 E-value=0.088 Score=48.08 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=21.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
+...|++.|.+||||||+...|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998654
No 360
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.95 E-value=0.094 Score=48.20 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=21.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
+|+|+|.+||||||+...|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999766654
No 361
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.95 E-value=0.091 Score=47.93 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=22.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
.+...|+|+|..|||||||++.|...
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999988653
No 362
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.95 E-value=0.081 Score=49.54 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll 104 (514)
+--.++++|+.|||||||+..|+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 33578999999999999999886
No 363
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.94 E-value=0.061 Score=50.20 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=15.9
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll 104 (514)
-..++++|+.|||||||++.|.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999996
No 364
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.88 E-value=0.096 Score=46.59 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=22.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhC
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
+..+|.++|.+||||||+...|....|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999865544
No 365
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.83 E-value=0.089 Score=47.66 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=22.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHh
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
+...|++.|.+||||||+...|....
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999986544
No 366
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=91.79 E-value=0.32 Score=47.45 Aligned_cols=66 Identities=12% Similarity=0.046 Sum_probs=49.6
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
.+.+.|||||+........ ..+..+|.+|+|+.+..... .+..+.+..+...+++.+-+++|++|.
T Consensus 213 ~yD~VIIDtpp~~~~~d~~-~l~~~ad~vilV~~~~~~~~-------~~~~~~~~~l~~~~~~~~GvVlN~~~~ 278 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVSDAA-VVGRSVGTSLLVARFGLNTA-------KEVSLSMQRLEQAGVNIKGAILNGVIK 278 (299)
T ss_dssp HCSEEEEECCCTTTCTHHH-HHGGGCSEEEEEEETTTSCT-------THHHHHHHHHHHTTCCCCCEEEEECCC
T ss_pred CCCEEEEcCCCCchhHHHH-HHHHHCCEEEEEEcCCCChH-------HHHHHHHHHHHhCCCCeEEEEEeCCcc
Confidence 3569999999976543322 23478999999999877643 477788888888888745588999997
No 367
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.78 E-value=0.082 Score=50.80 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll 104 (514)
-.++++|+.|||||||++.|.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 479999999999999999883
No 368
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.71 E-value=0.082 Score=47.00 Aligned_cols=27 Identities=19% Similarity=0.096 Sum_probs=18.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhC
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
+...|.+.|.+||||||+...|....+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346799999999999999999865544
No 369
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.70 E-value=0.099 Score=51.59 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=22.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
+...++|+|..|||||||++.|+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4678999999999999999999754
No 370
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.64 E-value=0.086 Score=51.06 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll 104 (514)
-.++|+|+.|||||||++.|.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 468999999999999999884
No 371
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.58 E-value=0.087 Score=50.21 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=18.9
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll 104 (514)
-.++++|+.|||||||++.|.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999883
No 372
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.46 E-value=0.11 Score=46.08 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=21.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
+|+|+|.+||||||+...|....|.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~ 30 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL 30 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 6999999999999999998766553
No 373
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.41 E-value=0.11 Score=47.95 Aligned_cols=27 Identities=26% Similarity=0.176 Sum_probs=23.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
...|+++|.+||||||+...|....+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999999776664
No 374
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.40 E-value=0.13 Score=45.82 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=21.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
..+|+|..|+|||||+.+|.+..+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 678999999999999999977654
No 375
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.33 E-value=0.11 Score=47.06 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.7
Q ss_pred EEEEecCCCChHHHHHHHHHHh
Q 010278 86 VVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 86 v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
|+|+|+.|+|||||+++|+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999997553
No 376
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.33 E-value=0.099 Score=46.56 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
...++++|++|+|||||+.++..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998854
No 377
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.26 E-value=0.094 Score=51.07 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll 104 (514)
-.++|+|+.|||||||++.|.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 468999999999999999883
No 378
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.20 E-value=0.12 Score=47.58 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhC
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
...|+|.|.+||||||+...|.. .|
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg 28 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LG 28 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TT
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cC
Confidence 46899999999999999998854 44
No 379
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.14 E-value=0.11 Score=52.10 Aligned_cols=23 Identities=35% Similarity=0.275 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
-.|+|+|+.|||||||++.|+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 48999999999999999998543
No 380
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.13 E-value=0.14 Score=44.78 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
+|++.|.+||||||+...|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999866555
No 381
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.12 E-value=0.17 Score=46.99 Aligned_cols=30 Identities=13% Similarity=0.107 Sum_probs=24.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
.++...|.++|.|||||+|....|....|.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 345567889999999999999999777664
No 382
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.11 E-value=0.11 Score=49.23 Aligned_cols=29 Identities=21% Similarity=0.163 Sum_probs=23.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
..++..|.++|.+||||||+...|....+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34567899999999999999999865543
No 383
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.08 E-value=0.14 Score=47.03 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
+|+++|.+||||||+...|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~ 26 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGI 26 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999766653
No 384
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.07 E-value=0.095 Score=52.75 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
--+++|+|..|||||||++.|+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999954
No 385
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.07 E-value=0.086 Score=52.38 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=20.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
.-+++++|+.|||||||++.|+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34799999999999999999854
No 386
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.06 E-value=0.15 Score=46.32 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=24.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
..+.+|+++|.++|||||+.+.|....|.
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg~ 38 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYGA 38 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 35789999999999999999998665453
No 387
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.04 E-value=0.12 Score=46.14 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=21.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
.+|+++|.+||||||+...|....|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGV 28 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 46999999999999999998665553
No 388
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.01 E-value=0.15 Score=47.04 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=23.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
+..+|+++|.++|||||+...|....|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 31 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGL 31 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCc
Confidence 3468999999999999999999766553
No 389
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.00 E-value=0.12 Score=44.93 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=20.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
+...++++|.+|+|||||+..+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999998844
No 390
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.99 E-value=0.14 Score=44.84 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
-+|++.|.+||||||+...|....|.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 58999999999999999988665553
No 391
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.92 E-value=0.11 Score=49.76 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll 104 (514)
-.++++|+.|||||||++.|.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAIS 51 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999884
No 392
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.91 E-value=0.14 Score=48.05 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=23.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
.+..|+|.|.+||||||+...|....|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4578999999999999999999766654
No 393
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.90 E-value=0.066 Score=52.59 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
+--.++|+|+.|||||||++.|++
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 335799999999999999998843
No 394
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.74 E-value=0.12 Score=52.01 Aligned_cols=23 Identities=30% Similarity=0.127 Sum_probs=19.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
--.++|+|+.|||||||++.|..
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 34689999999999999998843
No 395
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.73 E-value=0.12 Score=52.11 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
+.-.++|+|+.|||||||++.|+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999854
No 396
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.69 E-value=0.17 Score=49.13 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=23.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHh
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
.+...|.++|.+|||||||...|....
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 446789999999999999999997654
No 397
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.60 E-value=0.17 Score=47.35 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=24.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
.+..+|+|+|.+||||||+...|....|.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~ 42 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGF 42 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 44568999999999999999998766663
No 398
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.57 E-value=0.55 Score=44.48 Aligned_cols=65 Identities=9% Similarity=0.208 Sum_probs=45.1
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcC--CCeEEEEEeeccC
Q 010278 159 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVNKMDD 233 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~--vp~~IvviNK~D~ 233 (514)
..+.+.|||+|+..... ....+..+|.+|+|+.+..... ......+..+..++ ++ +.+++|+++.
T Consensus 143 ~~yD~viiD~pp~~~~~--~~~~l~~aD~vivv~~~~~~s~-------~~~~~~~~~l~~~~~~~~-~~vv~N~~~~ 209 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLDVT--LKNALLCSDYVIIPMTAEKWAV-------ESLDLFNFFVRKLNLFLP-IFLIITRFKK 209 (267)
T ss_dssp TTCSEEEEEECSSCSHH--HHHHHTTCSEEEEEEESCTTHH-------HHHHHHHHHHHTTTCCCC-EEEEEEEECT
T ss_pred cCCCEEEEECcCCccHH--HHHHHHHCCeEEEEeCCChHHH-------HHHHHHHHHHHHHhccCC-EEEEEecccC
Confidence 35779999999965432 4445667999999999875432 13445556666664 45 6789999965
No 399
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.52 E-value=0.14 Score=45.84 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
.|++.|.+||||||+...|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999986543
No 400
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.50 E-value=0.15 Score=45.30 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=20.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
+...|+++|.+||||||+...|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998854
No 401
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.45 E-value=0.15 Score=44.79 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
..|++.|.+||||||+...|....|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGY 28 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46999999999999999998765553
No 402
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=90.43 E-value=0.54 Score=46.30 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=18.7
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
..+.+.|++|+|||||.-++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3468999999999999988854
No 403
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.30 E-value=0.087 Score=48.14 Aligned_cols=22 Identities=23% Similarity=0.081 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 010278 85 NVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
.|+|+|.+|||||||+..|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999998543
No 404
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.29 E-value=0.12 Score=54.54 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
..+++|+|++|||||||++.|+.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34699999999999999999843
No 405
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.27 E-value=0.14 Score=51.32 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=33.2
Q ss_pred hHHHHHHHHHc-CCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeec
Q 010278 209 TREHVMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPIS 271 (514)
Q Consensus 209 t~e~l~~~~~~-~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiS 271 (514)
-+.-+.+++++ .-|++++ +|.+....+.....++.+.+..++++.| ..+|.+|
T Consensus 143 q~QRValArAL~~~P~lLL----LDEPts~LD~~~r~~l~~~l~~~~~~~g------~tvi~vT 196 (359)
T 3fvq_A 143 QQQRAALARALAPDPELIL----LDEPFSALDEQLRRQIREDMIAALRANG------KSAVFVS 196 (359)
T ss_dssp HHHHHHHHHHHTTCCSEEE----EESTTTTSCHHHHHHHHHHHHHHHHHTT------CEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEE----EeCCcccCCHHHHHHHHHHHHHHHHhCC------CEEEEEe
Confidence 34444555554 4465665 7987777777777777777777776655 3455554
No 406
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.24 E-value=0.91 Score=45.03 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=38.2
Q ss_pred eEEEEEeCCCCc-chHHHHHHhhh-hc-CEEEEEEECCCCcccccc--cCCcc----hHHHHHHHHHcCCCeEEEEEeec
Q 010278 161 TRFTILDAPGHK-SYVPNMISGAS-QA-DIGVLVISARKGEFETGF--EKGGQ----TREHVMLAKTLGVTKLLLVVNKM 231 (514)
Q Consensus 161 ~~i~liDtPGh~-~f~~~~~~g~~-~~-D~ailVVda~~g~~e~~~--~~~~q----t~e~l~~~~~~~vp~~IvviNK~ 231 (514)
..+.|.|+|+.. .-+...++.+. .- +.-++|||.-.-+...+. ....+ ++..-.+++.+++| + +++..+
T Consensus 128 ~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vp-V-i~lsQl 205 (338)
T 4a1f_A 128 KKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIP-I-IALVQL 205 (338)
T ss_dssp SCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSC-E-EEEEEC
T ss_pred CCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCe-E-EEEEec
Confidence 357788999842 22333333332 33 789999995433211000 00012 23344567788999 4 677776
Q ss_pred cC
Q 010278 232 DD 233 (514)
Q Consensus 232 D~ 233 (514)
-+
T Consensus 206 ~R 207 (338)
T 4a1f_A 206 NR 207 (338)
T ss_dssp CG
T ss_pred Cc
Confidence 65
No 407
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.16 E-value=0.12 Score=51.89 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=22.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhC
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
.-.++|+|+.|||||||++.|.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999966543
No 408
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=90.14 E-value=0.19 Score=47.77 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
.|+|+|.+|||||||...|....+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 689999999999999999966554
No 409
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.14 E-value=0.2 Score=46.80 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=23.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
+..+|+++|.+||||||+...|....+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4468999999999999999999766653
No 410
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.13 E-value=0.19 Score=45.10 Aligned_cols=23 Identities=26% Similarity=0.166 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
.|++.|.+||||||++..|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999986554
No 411
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=90.11 E-value=1.1 Score=44.32 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=20.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
+--.+.|.|.+++|||||+-+|...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999888654
No 412
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.11 E-value=0.16 Score=48.42 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
...|+++|.+||||||+...|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998543
No 413
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.08 E-value=0.15 Score=51.18 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=28.8
Q ss_pred HHHHHHHHHc-CCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhcc
Q 010278 210 REHVMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 258 (514)
Q Consensus 210 ~e~l~~~~~~-~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g 258 (514)
+.-+.+++++ .-|++++ +|.+....+....+++.+.+..+.++.|
T Consensus 151 ~QRvalArAL~~~P~lLL----LDEP~s~LD~~~r~~l~~~l~~l~~~~g 196 (355)
T 1z47_A 151 QQRVALARALAPRPQVLL----FDEPFAAIDTQIRRELRTFVRQVHDEMG 196 (355)
T ss_dssp HHHHHHHHHHTTCCSEEE----EESTTCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEE----EeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 3334444443 4565665 7988777777777777777777665554
No 414
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.08 E-value=0.18 Score=48.78 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=22.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
.+...|+|.|.+||||||+...|. ..|
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg 99 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLG 99 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCC
Confidence 456789999999999999999986 445
No 415
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.04 E-value=0.15 Score=51.24 Aligned_cols=45 Identities=22% Similarity=0.326 Sum_probs=28.7
Q ss_pred HHHHHHHHHc-CCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhcc
Q 010278 210 REHVMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 258 (514)
Q Consensus 210 ~e~l~~~~~~-~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g 258 (514)
+.-+.+++.+ .-|++++ +|.+....+....+.+.+.+..+.++.|
T Consensus 139 ~QRvalArAL~~~P~lLL----LDEP~s~LD~~~r~~l~~~l~~l~~~~g 184 (359)
T 2yyz_A 139 QQRVALARALVKQPKVLL----FDEPLSNLDANLRMIMRAEIKHLQQELG 184 (359)
T ss_dssp HHHHHHHHHHTTCCSEEE----EESTTTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCEEE----EECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 3334444443 4455665 7988777777777777777777665554
No 416
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.94 E-value=0.17 Score=51.92 Aligned_cols=25 Identities=32% Similarity=0.155 Sum_probs=21.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
+.-.++|+|+.|||||||++.|+..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 4457999999999999999999654
No 417
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.94 E-value=0.2 Score=46.47 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
.|++.|.+||||||+...|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~ 26 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSL 26 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999665553
No 418
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.92 E-value=0.17 Score=48.10 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=23.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
..+|+++|.+||||||+...|....|.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 457999999999999999999766654
No 419
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=89.83 E-value=0.28 Score=46.18 Aligned_cols=65 Identities=11% Similarity=0.147 Sum_probs=44.6
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCC--------CeEEEEEeec
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV--------TKLLLVVNKM 231 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~v--------p~~IvviNK~ 231 (514)
.+.+.|||||+.... .....+..+|.+|+|+.+..... ..+...+..+...+. ..+-+++|++
T Consensus 113 ~yD~viiD~p~~~~~--~~~~~l~~ad~vi~v~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~ 183 (260)
T 3q9l_A 113 DFEFIVCDSPAGIET--GALMALYFADEAIITTNPEVSSV-------RDSDRILGILASKSRRAENGEEPIKEHLLLTRY 183 (260)
T ss_dssp TCSEEEEECCSSSSH--HHHHHHHTCSEEEEEECSSHHHH-------HHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEE
T ss_pred CCCEEEEcCCCCCCH--HHHHHHHhCCEEEEEecCChhHH-------HHHHHHHHHHHHhccccccccCCcceEEEEecC
Confidence 688999999986543 45556778999999999875422 234444455544431 3477899999
Q ss_pred cC
Q 010278 232 DD 233 (514)
Q Consensus 232 D~ 233 (514)
|.
T Consensus 184 ~~ 185 (260)
T 3q9l_A 184 NP 185 (260)
T ss_dssp CH
T ss_pred Cc
Confidence 85
No 420
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.81 E-value=0.16 Score=51.10 Aligned_cols=22 Identities=27% Similarity=0.134 Sum_probs=19.4
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
-.++++|+.|||||||++.|.+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 4689999999999999998843
No 421
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=89.78 E-value=0.71 Score=44.49 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=43.2
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH------cCCCeEEEEEeeccC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDD 233 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~------~~vp~~IvviNK~D~ 233 (514)
.+.+.|||||+..... ....+..+|.+|+++.+..... ..+...+..+.. .+++.+-+++|++|.
T Consensus 154 ~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~ 224 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEEEST-------NNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDT 224 (298)
T ss_dssp GCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGGCCH-------HHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCT
T ss_pred CCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcHHHH-------HHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECC
Confidence 4779999999976543 2334557999999999876532 133334444433 256634589999996
No 422
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.73 E-value=0.15 Score=47.65 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=23.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
++...|+|.|..|||||||++.|....|
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~~g 45 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKYKN 45 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhccC
Confidence 4557899999999999999998866533
No 423
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.72 E-value=0.21 Score=45.94 Aligned_cols=25 Identities=32% Similarity=0.423 Sum_probs=22.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
+|.++|.|||||+|....|....|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 6889999999999999999877765
No 424
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.71 E-value=0.16 Score=51.24 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll 104 (514)
-.++++|+.|||||||++.|.
T Consensus 30 e~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHH
Confidence 468999999999999999884
No 425
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.66 E-value=0.53 Score=46.18 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=20.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
+--.+.|.|.+++|||||+-.+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3456899999999999999887643
No 426
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.63 E-value=0.17 Score=51.25 Aligned_cols=52 Identities=17% Similarity=0.324 Sum_probs=32.3
Q ss_pred HHHHHHHHHc-CCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhccCcccCCeeEEeec
Q 010278 210 REHVMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPIS 271 (514)
Q Consensus 210 ~e~l~~~~~~-~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiS 271 (514)
+.-+.+++++ .-|++++ +|.+....+.....++.+.+..+.++.|. .+|.+|
T Consensus 139 rQRVaiArAL~~~P~lLL----LDEPts~LD~~~~~~l~~~l~~l~~~~g~------tii~vT 191 (381)
T 3rlf_A 139 RQRVAIGRTLVAEPSVFL----LDEPLSNLDAALRVQMRIEISRLHKRLGR------TMIYVT 191 (381)
T ss_dssp HHHHHHHHHHHHCCSEEE----EESTTTTSCHHHHHHHHHHHHHHHHHHCC------EEEEEC
T ss_pred HHHHHHHHHHHcCCCEEE----EECCCcCCCHHHHHHHHHHHHHHHHhCCC------EEEEEE
Confidence 3344444443 3355665 79887777777777777777776666553 455554
No 427
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.59 E-value=0.19 Score=48.36 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
.++++|++|+|||||+.+|....+
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHcC
Confidence 499999999999999999966544
No 428
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.58 E-value=0.17 Score=51.10 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=30.2
Q ss_pred cchHHHHHHHHHc-CCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhcc
Q 010278 207 GQTREHVMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 258 (514)
Q Consensus 207 ~qt~e~l~~~~~~-~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g 258 (514)
+|-.+ +.+++.+ .-|++++ +|.+....+....+++.+.+..+.++.|
T Consensus 145 Gq~QR-valArAL~~~P~lLL----LDEP~s~LD~~~r~~l~~~l~~l~~~~g 192 (372)
T 1v43_A 145 GQRQR-VAVARAIVVEPDVLL----MDEPLSNLDAKLRVAMRAEIKKLQQKLK 192 (372)
T ss_dssp SCHHH-HHHHHHHTTCCSEEE----EESTTTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-HHHHHHHhcCCCEEE----EcCCCccCCHHHHHHHHHHHHHHHHhCC
Confidence 44444 3444443 4565665 7988777777777788887777666554
No 429
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=89.37 E-value=0.36 Score=46.50 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=27.8
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCC
Q 010278 160 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK 196 (514)
Q Consensus 160 ~~~i~liDtPGh~~f~~~~~~g~~~~D~ailVVda~~ 196 (514)
.+.+.|||||+.. .......+..+|.+|+|+.+..
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~ 137 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSF 137 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc
Confidence 4679999999975 3445566789999999999864
No 430
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.31 E-value=0.22 Score=45.80 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=19.5
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
-.++++|++|+|||||+..|..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 431
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.23 E-value=1 Score=44.20 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
--.+.|.|.+++|||||+-+|...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHH
Confidence 357899999999999999888654
No 432
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.94 E-value=0.25 Score=42.86 Aligned_cols=24 Identities=29% Similarity=0.189 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
-..+|+|+.|+|||||+.+|.+..
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999997644
No 433
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=88.92 E-value=0.24 Score=45.39 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=20.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
+...|+++|.+||||||+...|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998844
No 434
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.72 E-value=0.27 Score=44.42 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
.|+|.|.+||||||+...|....|.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~ 28 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGV 28 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 7999999999999999999766553
No 435
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.70 E-value=0.22 Score=50.61 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=19.4
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
-.++++|+.|||||||++.|.+
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 4689999999999999998843
No 436
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=88.68 E-value=0.2 Score=52.07 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=20.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
+-..++|+|+.|||||||++.|..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 446799999999999999998854
No 437
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.64 E-value=0.14 Score=51.14 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=29.4
Q ss_pred HHHHHHHHHc-CCCeEEEEEeeccCCCCCchHHHHHHHHhhhhhhhhhcc
Q 010278 210 REHVMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 258 (514)
Q Consensus 210 ~e~l~~~~~~-~vp~~IvviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g 258 (514)
+.-+.+++.+ .-|++++ +|.+....+....+.+.+.+..+.++.|
T Consensus 133 ~QRvalAraL~~~P~lLL----LDEP~s~LD~~~~~~l~~~l~~l~~~~g 178 (348)
T 3d31_A 133 QQRVALARALVTNPKILL----LDEPLSALDPRTQENAREMLSVLHKKNK 178 (348)
T ss_dssp HHHHHHHHHTTSCCSEEE----EESSSTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCEEE----EECccccCCHHHHHHHHHHHHHHHHhcC
Confidence 4444555554 4455655 7988777777777777777777655544
No 438
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.52 E-value=0.35 Score=45.14 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=23.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhC
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
+...|++.|.+||||||++..|....+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 557899999999999999999966544
No 439
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.51 E-value=0.16 Score=49.33 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=19.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhC
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
+.+.|+|.|..||||||+.+.|....|
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456799999999999999999876544
No 440
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.28 E-value=0.28 Score=47.48 Aligned_cols=24 Identities=21% Similarity=0.047 Sum_probs=20.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
--.++|+|++|+|||||+..|...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 347899999999999999988543
No 441
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.14 E-value=0.28 Score=46.23 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
..+.++|++|+|||||+.+|....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 349999999999999999986544
No 442
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=87.96 E-value=0.29 Score=48.46 Aligned_cols=27 Identities=22% Similarity=0.078 Sum_probs=22.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhC
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
+...++++|++|+|||||+..|....+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 345699999999999999999976553
No 443
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=87.76 E-value=1.3 Score=47.40 Aligned_cols=157 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcccEEEeeeEE----
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH---- 155 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT~~~~~~~---- 155 (514)
......+.+.|..|+||||+.-.|...... .|..+-.....
T Consensus 5 ~~~~~i~~~sgkGGvGKTT~a~~lA~~lA~-----------------------------------~G~rVLlvd~D~~~~ 49 (589)
T 1ihu_A 5 QNIPPYLFFTGKGGVGKTSISCATAIRLAE-----------------------------------QGKRVLLVSTDPASN 49 (589)
T ss_dssp SSCCSEEEEECSTTSSHHHHHHHHHHHHHH-----------------------------------TTCCEEEEECCTTCC
T ss_pred CCCCEEEEEeCCCcCHHHHHHHHHHHHHHH-----------------------------------CCCcEEEEECCCCcC
Q ss_pred --------------------------------------------------------------------------------
Q 010278 156 -------------------------------------------------------------------------------- 155 (514)
Q Consensus 156 -------------------------------------------------------------------------------- 155 (514)
T Consensus 50 l~~~l~~~~~~~~~~v~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~ 129 (589)
T 1ihu_A 50 VGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTD 129 (589)
T ss_dssp HHHHTTSCCCSSCEECTTSTTEEEEECCHHHHHHHHHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCcccCCCceeccchhhhhccCCHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhc
Q ss_pred -EEeCCeEEEEEeCCCCcchHHHHH----------------------------------HhhhhcC----EEEEEEECCC
Q 010278 156 -FETETTRFTILDAPGHKSYVPNMI----------------------------------SGASQAD----IGVLVISARK 196 (514)
Q Consensus 156 -~~~~~~~i~liDtPGh~~f~~~~~----------------------------------~g~~~~D----~ailVVda~~ 196 (514)
.-...+.+.++|||+.-.-++... .....+| .+++|+.+..
T Consensus 130 ~~l~~~yD~VIiDt~P~~~~lrll~lP~~~~~~l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~ 209 (589)
T 1ihu_A 130 ASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQK 209 (589)
T ss_dssp TTHHHHCSEEEESSCCCHHHHHHHHCGGGGTCCC------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCH
T ss_pred hhhcccCCEEEECCCCchhHHHHHHhHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Q ss_pred CcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCC----CchHHHHHHHHhhhhhhhhhccCcccCCeeEEeecc
Q 010278 197 GEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV----NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISG 272 (514)
Q Consensus 197 g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~~~~----~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa 272 (514)
... ..+.+.+..+...|++..-+++|++..... .|...+++...+.+..+-..++-. .+..+|.-+
T Consensus 210 ~~~-------~~~~~~~~~L~~~g~~~~gvVlN~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~i~~vPl~~ 279 (589)
T 1ihu_A 210 STL-------QEVARTHLELAAIGLKNQYLVINGVLPKTEAANDTLAAAIWEREQEALANLPADLAGL---PTDTLFLQP 279 (589)
T ss_dssp HHH-------HHHHHHHHHHHHHTCCCEEEEEEEECCGGGGSSCHHHHHHHHHHHHHHHTCCHHHHTS---CEEEEECCS
T ss_pred cHH-------HHHHHHHHHHHhCCCCCCEEEEcCCcCccccccCHHHHHHHHHHHHHHHHHHHhccCC---CEEEecCCC
Q ss_pred ccccccccc
Q 010278 273 LMGLNMKTR 281 (514)
Q Consensus 273 ~~G~gi~~l 281 (514)
..-.|+..+
T Consensus 280 ~e~~g~~~l 288 (589)
T 1ihu_A 280 VNMVGVSAL 288 (589)
T ss_dssp SCCCSHHHH
T ss_pred CCCCCHHHH
No 444
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.75 E-value=0.14 Score=51.30 Aligned_cols=21 Identities=29% Similarity=0.210 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll 104 (514)
-.++++|+.|||||||++.|.
T Consensus 32 e~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 468999999999999999884
No 445
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=87.58 E-value=0.32 Score=48.57 Aligned_cols=26 Identities=23% Similarity=0.073 Sum_probs=21.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHh
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
+--+++|+|+.|+|||||++.|....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33579999999999999999996553
No 446
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.49 E-value=0.38 Score=42.27 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
....+.+.|.+|+|||||+.++..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998854
No 447
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.49 E-value=0.36 Score=48.80 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=22.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHh
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
.+...++++|++|+|||||+..|....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 344589999999999999999986543
No 448
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=87.49 E-value=0.29 Score=51.03 Aligned_cols=24 Identities=33% Similarity=0.249 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
-.++|+|+.|||||||++.|....
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 678999999999999999986543
No 449
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.41 E-value=0.33 Score=44.28 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=20.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
--.++++|++|+|||||+..|..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999998855
No 450
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=87.39 E-value=0.38 Score=45.03 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=22.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 109 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g~ 109 (514)
.+.+++++|.+||||||+...|....|.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~ 34 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGI 34 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999999766553
No 451
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=87.35 E-value=0.32 Score=44.54 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhC
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
+..|+++|.+||||||+...|....|
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46799999999999999998866555
No 452
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=87.15 E-value=1.4 Score=43.25 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=21.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
.+...|.+.|++|+|||+|+.++..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHHH
Confidence 3457899999999999999998844
No 453
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=87.13 E-value=0.61 Score=46.88 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=19.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
-..+.|.|.+++|||||+-+|..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHH
Confidence 34678899999999999988754
No 454
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=86.95 E-value=0.35 Score=44.81 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=20.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
--.++++|++|+|||||+..|..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 35789999999999999998854
No 455
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=86.88 E-value=0.36 Score=46.23 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
.++++|++|+|||||+.+|....
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 49999999999999999986554
No 456
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=86.72 E-value=0.34 Score=46.81 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
..|.++|.+||||||+...|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999998653
No 457
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.64 E-value=0.46 Score=44.80 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=21.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHh
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
+..+.+.|.+|+|||||+.+|....
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4569999999999999999985443
No 458
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=86.54 E-value=0.36 Score=48.50 Aligned_cols=22 Identities=36% Similarity=0.267 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 010278 85 NVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
..+|+|+.|||||||++++.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4669999999999999998654
No 459
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=86.49 E-value=1.5 Score=43.83 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=20.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
+--.+.|.|.+++|||||+-++..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999988843
No 460
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=86.48 E-value=0.33 Score=51.53 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=20.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
+--.++++|+.|||||||++.|.+
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 335799999999999999999844
No 461
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=86.44 E-value=0.25 Score=46.92 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=22.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHh
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
++...|+|.|..||||||+++.|....
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 456789999999999999999886544
No 462
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=86.37 E-value=0.31 Score=52.24 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
--.++++|+.|||||||++.|.+
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 34799999999999999998843
No 463
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=86.15 E-value=0.33 Score=52.01 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
--.++++|+.|||||||++.|.+
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999854
No 464
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.96 E-value=0.44 Score=44.56 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=21.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHh
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
...|++.|..||||||+++.|....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999986654
No 465
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=85.77 E-value=0.44 Score=49.12 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
+--.++|+|+.|+|||||++.|...
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3357999999999999999998654
No 466
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.66 E-value=0.46 Score=45.55 Aligned_cols=24 Identities=21% Similarity=0.045 Sum_probs=20.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
+--.++|+|++|+|||||+..|..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999998854
No 467
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=85.55 E-value=0.38 Score=51.00 Aligned_cols=22 Identities=18% Similarity=0.083 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
-.++++|+.|||||||++.|.+
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999854
No 468
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=85.53 E-value=0.31 Score=52.37 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=19.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
--.++++|+.|||||||++.|.+
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999998843
No 469
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=85.45 E-value=0.33 Score=52.25 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=20.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
+--.++++|+.|||||||++.|++
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 345799999999999999998843
No 470
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.39 E-value=3.3 Score=43.43 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=21.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHh
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
....+.+.|.+|+|||||+.+|....
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999985544
No 471
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=85.29 E-value=0.46 Score=43.40 Aligned_cols=25 Identities=28% Similarity=0.129 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
...+|+|+.|+|||||+++|.+..+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4678999999999999999976554
No 472
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=85.13 E-value=0.56 Score=42.28 Aligned_cols=22 Identities=18% Similarity=0.142 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
..+.+.|.+|+|||||+.++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998854
No 473
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=85.13 E-value=0.42 Score=51.47 Aligned_cols=23 Identities=22% Similarity=0.088 Sum_probs=20.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
--.++++|+.|+|||||++.|.+
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 34799999999999999999854
No 474
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=85.04 E-value=0.56 Score=43.10 Aligned_cols=25 Identities=12% Similarity=0.057 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
+...+.+.|.+|+|||||+.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999988543
No 475
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=85.00 E-value=0.49 Score=47.47 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHH
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll 104 (514)
.++..+|.++|..+||||||+.+|.
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHHH
Confidence 4567899999999999999999873
No 476
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=84.86 E-value=0.44 Score=50.55 Aligned_cols=22 Identities=18% Similarity=0.064 Sum_probs=19.5
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
-.++|+|+.|||||||++.|.+
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~G 334 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAG 334 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999843
No 477
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=84.72 E-value=0.28 Score=52.54 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=20.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
+--.++++|+.|||||||++.|++
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 335799999999999999998843
No 478
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=84.70 E-value=0.63 Score=45.84 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=21.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
..|+|+|.+++|||||...|....+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999865543
No 479
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=84.47 E-value=0.49 Score=41.45 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=20.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
....++.+.|.+|+|||||+..+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999998844
No 480
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=84.30 E-value=1.9 Score=39.39 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=41.3
Q ss_pred CCeEEEEEeCCCCcch-----HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010278 159 ETTRFTILDAPGHKSY-----VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 233 (514)
Q Consensus 159 ~~~~i~liDtPGh~~f-----~~~~~~g~~~~D~ailVVda~~g~~e~~~~~~~qt~e~l~~~~~~~vp~~IvviNK~D~ 233 (514)
..+.+.|||+||.-.. .....-.....+.+|+|+.+..+.. .++...+..++..+++-+-+++|++|.
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~-------~~~~~~i~~l~~~~~~i~gvvlN~~~~ 179 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCI-------NHAMLTAQVIQHAGLTLAGWVANDVTP 179 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHH-------HHHHHHHHHHHHTTCCEEEEEEECCSS
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcH-------HHHHHHHHHHHHCCCcEEEEEEeCCCC
Confidence 4578999999975421 1111111112234788888765422 255666666667788744578999996
No 481
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=84.05 E-value=0.49 Score=50.16 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll 104 (514)
-.++|+|+.|||||||++.|.
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~ 315 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILV 315 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999984
No 482
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=84.02 E-value=0.5 Score=50.88 Aligned_cols=22 Identities=18% Similarity=0.064 Sum_probs=19.5
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
-.++|+|+.|+|||||++.|.+
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~G 404 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAG 404 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999843
No 483
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=83.97 E-value=0.49 Score=50.93 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=20.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
--.++++|+.|+|||||++.|.+
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 34799999999999999999843
No 484
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=83.94 E-value=0.68 Score=45.96 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=21.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 010278 84 LNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
..|+|+|.++||||||...|....+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5799999999999999999966554
No 485
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=83.77 E-value=0.34 Score=51.98 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=19.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
--.++++|+.|||||||++.|++
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999998843
No 486
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=83.40 E-value=0.82 Score=44.25 Aligned_cols=29 Identities=24% Similarity=0.117 Sum_probs=23.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
.+.+..+.+.|++|+|||+|+.++....|
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34556788889999999999999966554
No 487
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=83.37 E-value=0.71 Score=42.74 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=18.7
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
-.++++|++|+|||||+-+++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999877743
No 488
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=83.35 E-value=0.71 Score=46.07 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=21.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHh
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
...+|+++|.+|+|||||...|....
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 45689999999999999998885443
No 489
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=83.04 E-value=0.75 Score=45.11 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=21.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhC
Q 010278 83 HLNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
...|+|+|++++|||||...|....+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999965443
No 490
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=82.90 E-value=0.58 Score=50.33 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=19.2
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 010278 84 LNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 84 ~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
-.++|+|+.|+|||||++.|.+
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~G 400 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAG 400 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3589999999999999998843
No 491
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.87 E-value=1.9 Score=44.25 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=23.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhC
Q 010278 80 NKRHLNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 80 ~~~~~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
-.++.-|.+.|+||+|||+|+.++...++
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 34567899999999999999999955443
No 492
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=82.73 E-value=0.9 Score=44.44 Aligned_cols=27 Identities=11% Similarity=0.162 Sum_probs=22.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhC
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
.+..|+|+|++++|||||...|....+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 346789999999999999999965544
No 493
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=82.56 E-value=0.62 Score=45.79 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 010278 85 NVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 85 ~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
..+|+|..|+|||||+++|.+..|
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~llg 49 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVFG 49 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred cEEEECCCCCcHHHHHHHHHHHhC
Confidence 688999999999999999976554
No 494
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=82.37 E-value=0.89 Score=42.60 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=22.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHh
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
.....|.+.|.+|+|||+|+.++....
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345678999999999999999985543
No 495
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=82.32 E-value=0.88 Score=43.39 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=22.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHh
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
.....+.+.|++|+|||||+.++....
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345679999999999999999985544
No 496
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=82.31 E-value=0.85 Score=44.24 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=23.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhC
Q 010278 81 KRHLNVVFIGHVDAGKSTTGGQILFLSG 108 (514)
Q Consensus 81 ~~~~~v~ivG~vd~GKSTLi~~Ll~~~g 108 (514)
.+...|.+.|++|+|||||+.+|....+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3456799999999999999999965543
No 497
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=82.28 E-value=0.86 Score=43.80 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=22.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHh
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFLS 107 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~~ 107 (514)
+...+.+.|++|+|||||+.++....
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 45789999999999999999985543
No 498
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=82.19 E-value=0.8 Score=45.64 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILFL 106 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~~ 106 (514)
+--.+.|+|++|+|||||+..|...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999988654
No 499
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=82.15 E-value=1.3 Score=41.17 Aligned_cols=22 Identities=23% Similarity=0.074 Sum_probs=17.6
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 010278 83 HLNVVFIGHVDAGKSTTGGQIL 104 (514)
Q Consensus 83 ~~~v~ivG~vd~GKSTLi~~Ll 104 (514)
-..+.+.|.+|+||||++-.++
T Consensus 12 G~i~litG~mGsGKTT~ll~~~ 33 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRL 33 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHH
Confidence 3567889999999999875553
No 500
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=82.14 E-value=2.3 Score=42.73 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=20.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 010278 82 RHLNVVFIGHVDAGKSTTGGQILF 105 (514)
Q Consensus 82 ~~~~v~ivG~vd~GKSTLi~~Ll~ 105 (514)
+...|.+.|.+|+|||+|+.++..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998843
Done!