Query 010280
Match_columns 514
No_of_seqs 144 out of 227
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 03:22:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010280.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010280hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 74.0 34 0.0011 35.5 12.8 48 458-505 539-586 (597)
2 3na7_A HP0958; flagellar bioge 71.3 67 0.0023 30.7 13.3 14 501-514 192-205 (256)
3 2zuo_A MVP, major vault protei 60.9 1.4E+02 0.0047 34.3 14.9 17 4-20 10-26 (861)
4 3mq7_A Bone marrow stromal ant 48.1 1.5E+02 0.0052 26.5 10.2 57 429-485 36-100 (121)
5 2eqb_B RAB guanine nucleotide 45.2 1.5E+02 0.0051 25.5 12.8 50 412-469 26-75 (97)
6 3viq_A SWI5-dependent recombin 40.9 1.1E+02 0.0038 27.0 8.3 63 434-496 7-69 (122)
7 3oja_A Leucine-rich immune mol 36.9 1.6E+02 0.0056 29.8 10.0 62 414-480 412-473 (487)
8 3ljm_A Coil Ser L9C; de novo d 33.3 47 0.0016 23.0 3.6 22 430-451 2-25 (31)
9 3ni0_A Bone marrow stromal ant 28.4 2.9E+02 0.0099 23.9 8.9 48 429-476 29-87 (99)
10 3vkg_A Dynein heavy chain, cyt 26.0 5.7E+02 0.02 33.6 14.0 66 416-483 1917-1982(3245)
11 3mq9_A Bone marrow stromal ant 23.0 5.8E+02 0.02 25.6 12.2 16 146-161 138-153 (471)
12 3f1i_H Hepatocyte growth facto 22.4 2.9E+02 0.0098 24.0 7.3 46 444-494 51-96 (98)
13 3rk3_E Complexin-1; snare prot 22.1 3.1E+02 0.01 22.0 7.1 25 438-462 27-51 (63)
14 1f5n_A Interferon-induced guan 20.9 8.1E+02 0.028 26.5 12.9 6 155-160 199-204 (592)
15 2dfs_A Myosin-5A; myosin-V, in 20.4 1E+03 0.036 27.5 13.8 18 438-455 981-998 (1080)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=74.03 E-value=34 Score=35.46 Aligned_cols=48 Identities=8% Similarity=0.122 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCCCC
Q 010280 458 QAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQIPS 505 (514)
Q Consensus 458 ~EKm~NKLA~a~rkAEEkRA~AEArr~eq~~Ka~EkA~kiR~TGk~Ps 505 (514)
.+++.+++..++++-++++...++-+.+-....++.-..+.++.+-|.
T Consensus 539 ~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 539 TEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred hhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 355557777778877777777766665555555566666677766664
No 2
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=71.34 E-value=67 Score=30.65 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=8.0
Q ss_pred CCCCCCCCcccccC
Q 010280 501 GQIPSSHFTCCGWF 514 (514)
Q Consensus 501 Gk~Pss~f~cCgCF 514 (514)
|-+|-..-.|-|||
T Consensus 192 avv~v~~~~C~GC~ 205 (256)
T 3na7_A 192 SIVTIKKQACGGCF 205 (256)
T ss_dssp SEEECBTTBCTTTC
T ss_pred eEEEeeCCccCCCC
Confidence 44455444566887
No 3
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=60.88 E-value=1.4e+02 Score=34.29 Aligned_cols=17 Identities=35% Similarity=0.298 Sum_probs=7.0
Q ss_pred cCCCcccccCCCCCCCC
Q 010280 4 IGPHHNRKKDGSNSNSA 20 (514)
Q Consensus 4 ~g~~~~~~~~~~~~~~~ 20 (514)
++|||-.-+=--|.|-.
T Consensus 10 i~P~~YiHVld~Ntnvt 26 (861)
T 2zuo_A 10 IPPYHYIHVLDQNSNVS 26 (861)
T ss_dssp CTTCCBBCCSSSCCCCT
T ss_pred eCCceEEEEEeCCCCeE
Confidence 34454444433333333
No 4
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=48.12 E-value=1.5e+02 Score=26.47 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010280 429 QAWESRQKAKLEAE-----MRRIEAEVEQIRAQ---AQAKMVKKISMSRQRSEEKRAAAEARKSR 485 (514)
Q Consensus 429 ~AWEN~QKAKAEAe-----mrKiE~KLEKkRA~---a~EKm~NKLA~a~rkAEEkRA~AEArr~e 485 (514)
++||.+..+.|+|. +..|-.-|+++++. -+++++.+|....++-+++-+.+|..|.+
T Consensus 36 qAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 36 EAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677766666654 34444555555555 35667777777777777777766665544
No 5
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.17 E-value=1.5e+02 Score=25.55 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=38.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010280 412 AEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSR 469 (514)
Q Consensus 412 AEkAK~~~RyqREEaKI~AWEN~QKAKAEAemrKiE~KLEKkRA~a~EKm~NKLA~a~ 469 (514)
.|..++..++.+ |..++..||.+..+|+.+||-.=+.+++.-.+-++.++
T Consensus 26 ~e~~~L~~~l~e--------E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar 75 (97)
T 2eqb_B 26 DEVKRLREDIAK--------ENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADAR 75 (97)
T ss_dssp HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554 45678999999999999999999999998766666553
No 6
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=40.87 E-value=1.1e+02 Score=26.99 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 010280 434 RQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEY 496 (514)
Q Consensus 434 ~QKAKAEAemrKiE~KLEKkRA~a~EKm~NKLA~a~rkAEEkRA~AEArr~eq~~Ka~EkA~k 496 (514)
.++++.+++++.++.+|+..+....=+-.|+.+.+...-..||.....--.+=...+.++...
T Consensus 7 ~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~asq~aaeeLf~~~~~rv~r 69 (122)
T 3viq_A 7 SRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQAAEVLFKPMAERIRL 69 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367788899999999999999888888888888888888889988776655555555555544
No 7
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.85 E-value=1.6e+02 Score=29.80 Aligned_cols=62 Identities=10% Similarity=0.080 Sum_probs=31.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010280 414 KSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAE 480 (514)
Q Consensus 414 kAK~~~RyqREEaKI~AWEN~QKAKAEAemrKiE~KLEKkRA~a~EKm~NKLA~a~rkAEEkRA~AE 480 (514)
..+...+|+.+.++.+. .+.++++.++++..+.++.|. -.++++..|..+...-+++++...
T Consensus 412 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQS----VQNNAIRDWDMYQHKETQLAE-ENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HhhcchhhhhhhhhHHHHHHH-HhhhhhhhhhhhhhhhHhcccHHH
Confidence 34555556555555443 333355555555555555444 334455555555555555554443
No 8
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=33.27 E-value=47 Score=22.96 Aligned_cols=22 Identities=36% Similarity=0.755 Sum_probs=12.7
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHH
Q 010280 430 AWESRQK--AKLEAEMRRIEAEVE 451 (514)
Q Consensus 430 AWEN~QK--AKAEAemrKiE~KLE 451 (514)
.||.+.| |..|.+++-+|.|||
T Consensus 2 ewealekkcaalesklqalekkle 25 (31)
T 3ljm_A 2 EWEALEKKCAALESKLQALEKKLE 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666554 345566666666665
No 9
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=28.44 E-value=2.9e+02 Score=23.92 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 010280 429 QAWESRQKAKLEAE-----MRRIEAEVEQIRAQA------QAKMVKKISMSRQRSEEKR 476 (514)
Q Consensus 429 ~AWEN~QKAKAEAe-----mrKiE~KLEKkRA~a------~EKm~NKLA~a~rkAEEkR 476 (514)
+||+.+..+.|+|. +..|-.-|+++++.. ++++..+|....++-++++
T Consensus 29 ~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 29 RTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777665 344555566666554 4666677777777666665
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=26.03 E-value=5.7e+02 Score=33.56 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010280 416 KHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARK 483 (514)
Q Consensus 416 K~~~RyqREEaKI~AWEN~QKAKAEAemrKiE~KLEKkRA~a~EKm~NKLA~a~rkAEEkRA~AEArr 483 (514)
.-..||+.=..||..= +.|-++.+.++..++.+|+++...+ ++++.+|..-+..|+++++.+++.+
T Consensus 1917 ~~~~rl~~GL~KL~et-~~~V~~l~~~L~~~~~~L~~k~~ea-~~~l~~i~~~~~~ae~~k~~v~~~~ 1982 (3245)
T 3vkg_A 1917 EEQLHLNIGLKKLRDT-EAQVKDLQVSLAQKNRELDVKNEQA-NQKLKQMVQDQQAAEIKQKDARELQ 1982 (3245)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555444444432 3445556666666667777665544 5567777777778888876665443
No 11
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.98 E-value=5.8e+02 Score=25.55 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=12.0
Q ss_pred CCCCCchhHHHHHhhh
Q 010280 146 PMPSKWNDAEKWIMNR 161 (514)
Q Consensus 146 P~PSKWdDAqKWI~sr 161 (514)
..|.-|||=..+....
T Consensus 138 ~~P~Twdel~~~a~~l 153 (471)
T 3mq9_A 138 NPPKTWEEIPALDKEL 153 (471)
T ss_dssp SCCSBGGGHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 5689999988876553
No 12
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=22.42 E-value=2.9e+02 Score=23.95 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 010280 444 RRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQG 494 (514)
Q Consensus 444 rKiE~KLEKkRA~a~EKm~NKLA~a~rkAEEkRA~AEArr~eq~~Ka~EkA 494 (514)
-+.-.++|.+|. +.|.++.||+.|+ ++|++..+-|.+...|....|
T Consensus 51 l~~i~~~ee~R~-~yE~LQDkL~qi~----eAR~ALdaLR~eH~~Klrr~a 96 (98)
T 3f1i_H 51 LELLNQLDERRL-YYEGLQDKLAQIR----DARGALSALREEHREKLRRAA 96 (98)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Confidence 333345555554 4578888888775 678888888877777766555
No 13
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=22.07 E-value=3.1e+02 Score=21.97 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010280 438 KLEAEMRRIEAEVEQIRAQAQAKMV 462 (514)
Q Consensus 438 KAEAemrKiE~KLEKkRA~a~EKm~ 462 (514)
+-.++-+|+|.+-|+||..+-+||-
T Consensus 27 ~Rk~Kh~kME~ERE~mRQ~IRdKY~ 51 (63)
T 3rk3_E 27 ERKAKYAKMEAEREAVRQGIRDKYG 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345667888889999988887764
No 14
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=20.90 E-value=8.1e+02 Score=26.45 Aligned_cols=6 Identities=0% Similarity=0.490 Sum_probs=2.9
Q ss_pred HHHHhh
Q 010280 155 EKWIMN 160 (514)
Q Consensus 155 qKWI~s 160 (514)
+.||-+
T Consensus 199 ~eyLe~ 204 (592)
T 1f5n_A 199 DEYLTY 204 (592)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 445544
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=20.36 E-value=1e+03 Score=27.53 Aligned_cols=18 Identities=11% Similarity=0.346 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010280 438 KLEAEMRRIEAEVEQIRA 455 (514)
Q Consensus 438 KAEAemrKiE~KLEKkRA 455 (514)
+++++++.++.+++..+.
T Consensus 981 ~~~~~v~~L~~e~~~l~~ 998 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRK 998 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555544443
Done!