Query 010280
Match_columns 514
No_of_seqs 144 out of 227
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 03:22:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010280.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010280hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2d4ca1 a.238.1.1 (A:11-247) E 21.7 2E+02 0.014 23.5 9.2 49 417-465 151-199 (237)
2 d1eh1a_ d.67.3.1 (A:) Ribosome 8.8 5.1E+02 0.037 21.6 8.1 53 408-461 118-172 (185)
3 d1gpja1 a.151.1.1 (A:303-404) 6.0 5.1E+02 0.037 19.1 6.0 47 419-467 7-53 (102)
4 d2clyb1 f.53.1.1 (B:4-123) ATP 5.3 2.4E+02 0.017 22.7 3.5 18 437-454 102-119 (120)
5 d1t92a_ d.24.1.3 (A:) Pullulan 4.9 3.6E+02 0.026 20.9 4.4 23 434-456 6-28 (108)
6 d2azea1 e.63.1.1 (A:199-346) T 4.8 8.1E+02 0.059 20.3 6.9 31 438-468 6-36 (148)
7 d1ge9a_ d.67.3.1 (A:) Ribosome 4.1 9.3E+02 0.068 19.8 7.9 46 407-456 118-165 (184)
8 d1x58a1 a.4.1.1 (A:8-56) Hypot 3.9 98 0.0072 21.8 0.1 10 125-134 29-38 (49)
9 d1gs9a_ a.24.1.1 (A:) Apolipop 3.9 5.8E+02 0.043 19.8 5.1 58 436-493 80-137 (144)
10 d3b8ma1 d.58.60.1 (A:64-330) E 3.8 1.1E+03 0.077 20.2 7.4 43 436-478 145-187 (267)
No 1
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.73 E-value=2e+02 Score=23.45 Aligned_cols=49 Identities=14% Similarity=0.301 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010280 417 HIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKI 465 (514)
Q Consensus 417 ~~~RyqREEaKI~AWEN~QKAKAEAemrKiE~KLEKkRA~a~EKm~NKL 465 (514)
....|........++.+.....++.+++..+.++|..+..+...|.+=+
T Consensus 151 ~rk~~d~~~~~~~~~~~k~~~~~~e~l~~a~~~~e~~~~~~~~~l~~l~ 199 (237)
T d2d4ca1 151 HLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLL 199 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555666666666788899999999999988888887643
No 2
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]}
Probab=8.78 E-value=5.1e+02 Score=21.63 Aligned_cols=53 Identities=28% Similarity=0.283 Sum_probs=32.2
Q ss_pred hHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010280 408 AWAEAEKSKHIARFKREEI--KIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKM 461 (514)
Q Consensus 408 AWEEAEkAK~~~RyqREEa--KI~AWEN~QKAKAEAemrKiE~KLEKkRA~a~EKm 461 (514)
+++..|.+|..-|--|.++ +|..++..+ .--|-..+++|.++++.=-.+..++
T Consensus 118 ~k~~~E~akv~iR~iR~~~~~~ikk~~k~~-~iseD~~k~~~~eiq~ltd~~~~~i 172 (185)
T d1eh1a_ 118 VRQYAEEGRVAIRNIRREALDKLKKLAKEL-HLSEDETKRAEAEIQKITDEFIAKA 172 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888998888877754 565554322 1246666777766666544443333
No 3
>d1gpja1 a.151.1.1 (A:303-404) Glutamyl tRNA-reductase dimerization domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=5.95 E-value=5.1e+02 Score=19.11 Aligned_cols=47 Identities=9% Similarity=0.167 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010280 419 ARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISM 467 (514)
Q Consensus 419 ~RyqREEaKI~AWEN~QKAKAEAemrKiE~KLEKkRA~a~EKm~NKLA~ 467 (514)
.=...+-.....|- +.-++.--|+.+-.++|..|..-++|..++|..
T Consensus 7 ~II~ee~~~F~~w~--~~~~~~p~I~~lr~~~e~ir~~Elekal~kl~~ 53 (102)
T d1gpja1 7 KLIEEELSTVEEEL--EKLKERRLVADVAKSLHEIKDRELERALRRLKT 53 (102)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred HHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33455666677774 344566778888888888888888888777763
No 4
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.26 E-value=2.4e+02 Score=22.66 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010280 437 AKLEAEMRRIEAEVEQIR 454 (514)
Q Consensus 437 AKAEAemrKiE~KLEKkR 454 (514)
...++.|..+|.+||+++
T Consensus 102 ~~s~~rI~~lekeLe~ik 119 (120)
T d2clyb1 102 TQSKTRIQEYEKELEKMR 119 (120)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344455666777777765
No 5
>d1t92a_ d.24.1.3 (A:) Pullulanase secretion protein PulG {Klebsiella pneumoniae [TaxId: 573]}
Probab=4.94 E-value=3.6e+02 Score=20.87 Aligned_cols=23 Identities=9% Similarity=0.320 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010280 434 RQKAKLEAEMRRIEAEVEQIRAQ 456 (514)
Q Consensus 434 ~QKAKAEAemrKiE~KLEKkRA~ 456 (514)
-+.++|.++|+.|+.-||.-|..
T Consensus 6 Ak~~~a~~di~~i~~aL~~Y~~d 28 (108)
T d1t92a_ 6 ADRQKVVSDLVALEGALDMYKLD 28 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667888899998887766543
No 6
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.76 E-value=8.1e+02 Score=20.29 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010280 438 KLEAEMRRIEAEVEQIRAQAQAKMVKKISMS 468 (514)
Q Consensus 438 KAEAemrKiE~KLEKkRA~a~EKm~NKLA~a 468 (514)
+.|++.+++...+++|++.+.|=++..++.-
T Consensus 6 ~Le~E~~~~~erI~~K~~~LqeLi~Q~iafk 36 (148)
T d2azea1 6 NLEVERQRRLERIKQKQSQLQELILQQIAFK 36 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666677777777777666665543
No 7
>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]}
Probab=4.08 E-value=9.3e+02 Score=19.80 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=27.7
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 010280 407 SAWAEAEKSKHIARFKREEIKIQAWESRQKAK--LEAEMRRIEAEVEQIRAQ 456 (514)
Q Consensus 407 aAWEEAEkAK~~~RyqREEaKI~AWEN~QKAK--AEAemrKiE~KLEKkRA~ 456 (514)
.+++.+|.+|+.-|.-|.++. ..++|.+ -|-..+++|.++++.=-.
T Consensus 118 ~ak~~~E~aKv~iRniR~~~~----~~lKk~k~iseD~~k~~~~~iqkltd~ 165 (184)
T d1ge9a_ 118 LLHKITEEARVRVRNVRREAK----EMIEELEGISEDEKKRALERLQKLTDK 165 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHSTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHH----HHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 367888889998888877643 2223322 255666666666654333
No 8
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.93 E-value=98 Score=21.84 Aligned_cols=10 Identities=60% Similarity=1.095 Sum_probs=0.0
Q ss_pred cccccccccc
Q 010280 125 SFEFHKGERS 134 (514)
Q Consensus 125 sFEFhK~era 134 (514)
+|.||+|.++
T Consensus 29 s~PF~~GR~~ 38 (49)
T d1x58a1 29 SFPFQKGRRA 38 (49)
T ss_dssp HSCCCTTCCH
T ss_pred ccCCCCCchh
No 9
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=3.88 E-value=5.8e+02 Score=19.76 Aligned_cols=58 Identities=24% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 010280 436 KAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQ 493 (514)
Q Consensus 436 KAKAEAemrKiE~KLEKkRA~a~EKm~NKLA~a~rkAEEkRA~AEArr~eq~~Ka~Ek 493 (514)
+.+++..|..+..+|+.......+++...+...+.+....-.....+....+.....+
T Consensus 80 r~~l~~~lee~r~kl~~~~eel~~~~~~~~ee~r~~l~p~~eel~~~l~~~~eel~~k 137 (144)
T d1gs9a_ 80 QARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKR 137 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 10
>d3b8ma1 d.58.60.1 (A:64-330) Enterochelin transport protein FepE {Escherichia coli [TaxId: 562]}
Probab=3.82 E-value=1.1e+03 Score=20.17 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010280 436 KAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAA 478 (514)
Q Consensus 436 KAKAEAemrKiE~KLEKkRA~a~EKm~NKLA~a~rkAEEkRA~ 478 (514)
+...+.++.-++.++...+..+......+|..++....=++++
T Consensus 145 ~~~i~~~~~~l~~~~~~~~~~ak~~~~~~i~~l~~Al~IA~~a 187 (267)
T d3b8ma1 145 RNKLEIKTQFEKEKLAQDRIKMKNQLDANIQRLNYSLDIANAA 187 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Done!