BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010281
(514 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R1A|1 Chain 1, Crystal Structure Of Human Rhinovirus Serotype 1a (Hrv1a)
pdb|2HWD|1 Chain 1, A Comparison Of The Anti-Rhinoviral Drug Binding Pocket In
Hrv14 And Hrv1a
pdb|2HWE|1 Chain 1, A Comparison Of The Anti-Rhinoviral Drug Binding Pocket In
Hrv14 And Hrv1a
pdb|2HWF|1 Chain 1, A Comparison Of The Anti-Rhinoviral Drug Binding Pocket In
Hrv14 And Hrv1a
Length = 287
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 44 ARFLLVSLILNRTEMVKFL-----VDRFRDLVDDCNANFRETNFKEWKIVVQEIVRFTKV 98
R+++ S + + FL V R VD + N ++ NF +WKI +QE+ + +
Sbjct: 53 TRYVITSQTRDEMSIESFLGRSGCVHISRIKVDYTDYNGQDINFTKWKITLQEMAQIRRK 112
Query: 99 DTAFAYIRPLRYCAMFDSHAASLPYVA 125
F Y+R FDS +P +A
Sbjct: 113 FELFTYVR-------FDSEITLVPCIA 132
>pdb|3TMM|A Chain A, Tfam Imposes A U-Turn On Mitochondrial Dna
Length = 238
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 56 TEMVKFLVDRFRDLVDDCNANFRETNFKEWKIVVQEIVRF 95
TE+++ + R+R+L D +++ EW++ +EI RF
Sbjct: 70 TELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRF 109
>pdb|3TQ6|A Chain A, Crystal Structure Of Human Mitochondrial Transcription
Factor A, Tfam Or Mttfa, Bound To The Light Strand
Promoter Lsp
pdb|3TQ6|B Chain B, Crystal Structure Of Human Mitochondrial Transcription
Factor A, Tfam Or Mttfa, Bound To The Light Strand
Promoter Lsp
Length = 214
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 56 TEMVKFLVDRFRDLVDDCNANFRETNFKEWKIVVQEIVRF 95
TE+++ + R+R+L D +++ EW++ +EI RF
Sbjct: 38 TELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRF 77
>pdb|3DL6|A Chain A, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|B Chain B, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|C Chain C, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|D Chain D, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|E Chain E, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
Length = 521
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 397 MVGISSS------DANVDIYNDAESILSTSFSE---WEVLLCTSTSLDLVWAQVLSDPFL 447
+V ISSS D NV ++ + E + ++ + +C S ++ L D F+
Sbjct: 72 IVVISSSLPQDEADPNVVVFRNLEDSIENLMNDDSIENIFVCGGES---IYRDALKDNFV 128
Query: 448 RRVILRFILCRCVFFHFFPPEASEEYLPVCLPQ 480
R+ L + + F + PE E +LPV + Q
Sbjct: 129 DRIYLTRVALEDIEFDTYFPEIPETFLPVYMSQ 161
>pdb|3DL5|A Chain A, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|B Chain B, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|C Chain C, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|D Chain D, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|E Chain E, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
Length = 521
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 397 MVGISSS------DANVDIYNDAESILSTSFSE---WEVLLCTSTSLDLVWAQVLSDPFL 447
+V ISSS D NV ++ + E + ++ + +C S ++ L D F+
Sbjct: 72 IVVISSSLPQDEADPNVVVFRNLEDSIENLMNDDSIENIFVCGGES---IYRDALKDNFV 128
Query: 448 RRVILRFILCRCVFFHFFPPEASEEYLPVCLPQ 480
R+ L + + F + PE E +LPV + Q
Sbjct: 129 DRIYLTRVALEDIEFDTYFPEIPETFLPVYMSQ 161
>pdb|2OIP|A Chain A, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|B Chain B, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|C Chain C, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|D Chain D, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|E Chain E, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
Length = 519
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 397 MVGISSS------DANVDIYNDAESILSTSFSE---WEVLLCTSTSLDLVWAQVLSDPFL 447
+V ISSS D NV ++ + E + ++ + +C S ++ L D F+
Sbjct: 70 IVVISSSLPQDEADPNVVVFRNLEDSIENLMNDDSIENIFVCGGES---IYRDALKDNFV 126
Query: 448 RRVILRFILCRCVFFHFFPPEASEEYLPVCLPQ 480
R+ L + + F + PE E +LPV + Q
Sbjct: 127 DRIYLTRVALEDIEFDTYFPEIPETFLPVYMSQ 159
>pdb|1QZF|A Chain A, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|B Chain B, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|C Chain C, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|D Chain D, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|E Chain E, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1SEJ|A Chain A, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|B Chain B, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|C Chain C, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|D Chain D, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|E Chain E, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
Length = 521
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 397 MVGISSS------DANVDIYNDAESILSTSFSE---WEVLLCTSTSLDLVWAQVLSDPFL 447
+V ISSS D NV ++ + E + ++ + +C S ++ L D F+
Sbjct: 72 IVVISSSLPQDEADPNVVVFRNLEDSIENLMNDDSIENIFVCGGES---IYRDALKDNFV 128
Query: 448 RRVILRFILCRCVFFHFFPPEASEEYLPVCLPQ 480
R+ L + + F + PE E +LPV + Q
Sbjct: 129 DRIYLTRVALEDIEFDTYFPEIPETFLPVYMSQ 161
>pdb|3HJ3|A Chain A, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|B Chain B, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|C Chain C, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|D Chain D, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
Length = 521
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 397 MVGISSS------DANVDIYNDAESILSTSFSE---WEVLLCTSTSLDLVWAQVLSDPFL 447
+V ISSS D NV ++ + E + ++ + +C S ++ L D F+
Sbjct: 72 IVVISSSLPQDEADPNVVVFRNLEDSIENLMNDDSIENIFVCGGES---IYRDALKDNFV 128
Query: 448 RRVILRFILCRCVFFHFFPPEASEEYLPVCLPQ 480
R+ L + + F + PE E +LPV + Q
Sbjct: 129 DRIYLTRVALEDIEFDTYFPEIPETFLPVYMSQ 161
>pdb|1D3E|1 Chain 1, Cryo-Em Structure Of Human Rhinovirus 16 (Hrv16) Complexed
With A Two-Domain Fragment Of Its Cellular Receptor,
Intercellular Adhesion Molecule-1 (D1d2-Icam-1).
Implications For Virus-Receptor Interactions. Alpha
Carbons Only
Length = 285
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 44 ARFLLVSLILNRTEMVKFLVDR--FRDLVDDCNANFRETNFKEWKIVVQEIVRFTKVDTA 101
R++ S L+ + FL + V D N+ + +F +W I +QE+ + +
Sbjct: 53 TRYVQSSQTLDEMSVESFLGRSGCIHESVLDIVDNYNDQSFTKWNINLQEMAQIRRKFEM 112
Query: 102 FAYIRPLRYCAMFDSHAASLPYVA 125
F Y R FDS +P VA
Sbjct: 113 FTYAR-------FDSEITMVPSVA 129
>pdb|1AYN|1 Chain 1, Human Rhinovirus 16 Coat Protein
pdb|1AYM|1 Chain 1, Human Rhinovirus 16 Coat Protein At High Resolution
pdb|1QJU|1 Chain 1, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Vp61209
pdb|1QJX|1 Chain 1, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Win68934
pdb|1QJY|1 Chain 1, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Vp65099
pdb|1C8M|1 Chain 1, Refined Crystal Structure Of Human Rhinovirus 16 Complexed
With Vp63843 (Pleconaril), An Anti-Picornaviral Drug
Currently In Clinical Trials
pdb|1NCR|A Chain A, The Structure Of Rhinovirus 16 When Complexed With
Pleconaril, An Antiviral Compound
pdb|1ND2|A Chain A, The Structure Of Rhinovirus 16
pdb|1ND3|A Chain A, The Structure Of Hrv16, When Complexed With Pleconaril, An
Antiviral Compound
Length = 285
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 44 ARFLLVSLILNRTEMVKFLVDR--FRDLVDDCNANFRETNFKEWKIVVQEIVRFTKVDTA 101
R++ S L+ + FL + V D N+ + +F +W I +QE+ + +
Sbjct: 53 TRYVQSSQTLDEMSVESFLGRSGCIHESVLDIVDNYNDQSFTKWNINLQEMAQIRRKFEM 112
Query: 102 FAYIRPLRYCAMFDSHAASLPYVA 125
F Y R FDS +P VA
Sbjct: 113 FTYAR-------FDSEITMVPSVA 129
>pdb|4EGQ|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase B From
Burkholderia Pseudomallei
pdb|4EGQ|B Chain B, Crystal Structure Of D-Alanine-D-Alanine Ligase B From
Burkholderia Pseudomallei
pdb|4EGQ|C Chain C, Crystal Structure Of D-Alanine-D-Alanine Ligase B From
Burkholderia Pseudomallei
pdb|4EGQ|D Chain D, Crystal Structure Of D-Alanine-D-Alanine Ligase B From
Burkholderia Pseudomallei
Length = 316
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 15/73 (20%)
Query: 146 NEVKFAELTLDTYRMLQCLEWEPTGSFYQKRPVLPNDHSGASIDHSGTSGVIDINFVADM 205
E +F + + +L C +W + +D +G +++N M
Sbjct: 242 KEAEFKRIARRAFDVLGCTDW---------------GRADFMLDAAGNPYFLEVNTAPGM 286
Query: 206 TDPSLPPNPRKAV 218
TD SLPP +AV
Sbjct: 287 TDHSLPPKAARAV 299
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,990,063
Number of Sequences: 62578
Number of extensions: 611447
Number of successful extensions: 1103
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1099
Number of HSP's gapped (non-prelim): 18
length of query: 514
length of database: 14,973,337
effective HSP length: 103
effective length of query: 411
effective length of database: 8,527,803
effective search space: 3504927033
effective search space used: 3504927033
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)