BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010281
(514 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8N9R8|SCAI_HUMAN Protein SCAI OS=Homo sapiens GN=SCAI PE=1 SV=2
Length = 606
Score = 195 bits (495), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 156/514 (30%), Positives = 238/514 (46%), Gaps = 59/514 (11%)
Query: 1 MRTSEARFIVEAYVFYEAILSRKYFEGA-KVKQLGVRFKELRFYARFLLVSLILNRTEMV 59
+RTSE ++ EA+ FY AI R Y+ K + + K+LR+YARF++V L+LN+ ++V
Sbjct: 139 LRTSETSYLNEAFSFYSAIRQRSYYSQVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVV 198
Query: 60 KFLVDRFRDLVDDCNANFRETNFKEWKIVVQEIVRFTKVDTAFAYIRPLRYCAMFDSHAA 119
K LV D ++D F + EW +V+QE+ F + D + A
Sbjct: 199 KDLVKELSDEIEDYTHRFNTEDQVEWNLVLQEVAAFIEADPVMVLNDDNTIVITSNRLAE 258
Query: 120 S-LPYVARFHAKKVLKFKDAILTSYHRNEVKFAELTLDTYRMLQCLEWEPTGSFYQKRPV 178
+ P + + L DA++ N+VKF+ELT+D +RMLQ LE EP
Sbjct: 259 TGAPLLEQGMIVGQLSLADALIIGNCNNQVKFSELTVDMFRMLQALEREPM--------- 309
Query: 179 LPNDHSGASIDHSGTSGVIDINFVADMTDPSLPPNPRKAVLYRPSATHLLAVIATVCEEL 238
+ + ++ G D P+ NP K +LY+P+ + L +A +EL
Sbjct: 310 ----NLASQMNKPGMQESAD--------KPTRRENPHKYLLYKPTFSQLYTFLAASFKEL 357
Query: 239 PPESIMLLYLSSSG--KAGHSNVPQGEHSGGSRKSSSSKIVSRIS-QKQNSSIPEYHVNG 295
P S++L+YLS++G G S+ GG +S+ I++ + K+N S E H
Sbjct: 358 PANSVLLIYLSATGVFPTGRSDSEGPYDFGGVLTNSNRDIINGDAIHKRNQSHKEMHC-- 415
Query: 296 KKESSDCYENYLWLGPRGNGDRNNLYPGDILPFTRRPLFLIVDSDISHAFKVIHGAEKGE 355
L+PGD+ PFTR+PLF+IVDS S A+K G+
Sbjct: 416 ------------------------LHPGDLYPFTRKPLFIIVDSSNSVAYKNFTNL-FGQ 450
Query: 356 TAALLLSPLRPAFKDPSSADTTQYGSQFTFFLTAPLQAFCQMVGISSSDANVDIYNDAES 415
LLSP A+ + D +Q GS FT FL PL AF + G+SS ++ +
Sbjct: 451 PLVCLLSP--TAYPK-ALQDQSQRGSLFTLFLNNPLMAFLFVSGLSS--MRRGLWEKCQE 505
Query: 416 ILSTSFSEWEVLLCTSTSLDLVWAQVLSDPFLRRVILRFILCRCVFFHFFPPEASEEYLP 475
L + LL S S+D + Q D FLR ++ RFI C + Y P
Sbjct: 506 YLRKINRDIAQLLTHSRSIDQAFLQFFGDEFLRLLLTRFIFCSATMRMHKIFRETRNY-P 564
Query: 476 VCLPQLPSCFSPKSDVVQSCVRRLANHLGVADYF 509
PQLP + ++ +Q + LA+ L V + F
Sbjct: 565 ESYPQLPRDETVENPHLQKHILELASILDVRNVF 598
>sp|Q8C8N2|SCAI_MOUSE Protein SCAI OS=Mus musculus GN=Scai PE=1 SV=2
Length = 606
Score = 194 bits (492), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 154/514 (29%), Positives = 238/514 (46%), Gaps = 59/514 (11%)
Query: 1 MRTSEARFIVEAYVFYEAILSRKYFEGA-KVKQLGVRFKELRFYARFLLVSLILNRTEMV 59
+RTSE ++ EA+ FY AI R Y+ K + + K+LR+YARF++V L+LN+ ++V
Sbjct: 139 LRTSETSYLNEAFSFYSAIRQRSYYSQVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVV 198
Query: 60 KFLVDRFRDLVDDCNANFRETNFKEWKIVVQEIVRFTKVDTAFAYIRPLRYCAMFDSHAA 119
K LV D ++D F + EW +V+QE+ F + D + A
Sbjct: 199 KDLVKELSDEIEDYTHRFNTEDQVEWNLVLQEVAAFIEADPVMVLNDDNTIVITSNRLAE 258
Query: 120 S-LPYVARFHAKKVLKFKDAILTSYHRNEVKFAELTLDTYRMLQCLEWEPTGSFYQKRPV 178
+ P + + L DA++ N+VKF+ELT+D +RMLQ LE EP
Sbjct: 259 TGAPLLEQGMIVGQLSLADALIIGNCNNQVKFSELTVDMFRMLQALEREPM--------- 309
Query: 179 LPNDHSGASIDHSGTSGVIDINFVADMTDPSLPPNPRKAVLYRPSATHLLAVIATVCEEL 238
+ + ++ G D P+ NP K +LY+P+ + L +A +EL
Sbjct: 310 ----NLASQMNKPGIQEPAD--------KPTRRENPHKYLLYKPTFSQLYTFLAASFKEL 357
Query: 239 PPESIMLLYLSSSG--KAGHSNVPQGEHSGGSRKSSSSKIVSRIS-QKQNSSIPEYHVNG 295
P S++L+YLS++G G S+ GG +S+ I++ + K+N S E H
Sbjct: 358 PANSVLLIYLSATGVFPTGRSDGEGPYDFGGVLTNSNRDIINGDAIHKRNQSHKEMHC-- 415
Query: 296 KKESSDCYENYLWLGPRGNGDRNNLYPGDILPFTRRPLFLIVDSDISHAFKVIHGAEKGE 355
L+PGD+ PFTR+PLF++VDS S A+K G+
Sbjct: 416 ------------------------LHPGDLYPFTRKPLFIVVDSSNSVAYKNFTNL-FGQ 450
Query: 356 TAALLLSPLRPAFKDPSSADTTQYGSQFTFFLTAPLQAFCQMVGISSSDANVDIYNDAES 415
LLSP A+ + D +Q GS FT FL PL AF + G+SS ++ +
Sbjct: 451 PLVCLLSP--TAYPK-ALQDQSQRGSLFTLFLNNPLMAFLFVSGLSS--MRRGLWEKCQE 505
Query: 416 ILSTSFSEWEVLLCTSTSLDLVWAQVLSDPFLRRVILRFILCRCVFFHFFPPEASEEYLP 475
L + LL S S+D + Q D FLR ++ RF+ C + Y P
Sbjct: 506 YLRKINRDIAQLLTHSRSIDQAFLQFFGDEFLRLLLTRFVFCSATMRMHKAFRETRNY-P 564
Query: 476 VCLPQLPSCFSPKSDVVQSCVRRLANHLGVADYF 509
PQLP + ++ +Q + LA+ L V + F
Sbjct: 565 ESYPQLPRDETVENPHLQKHILELASILDVRNIF 598
>sp|Q54YY1|SCAI_DICDI Protein SCAI homolog OS=Dictyostelium discoideum GN=scai PE=3 SV=1
Length = 773
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 135/321 (42%), Gaps = 73/321 (22%)
Query: 1 MRTSEARFIVEAYVFYEAILSRKYFEGAKV-KQLGVRFKELRFYARFLLVSLILNRTEMV 59
+RTS+ ++ E+Y+FYEAI R YF+ + K + K+LR+YARF++V L+LN+ ++V
Sbjct: 143 LRTSDTNYLNESYIFYEAIRLRSYFKDVSLDKTPDMMVKQLRYYARFIVVCLLLNKKKVV 202
Query: 60 KFLVDRFRDLVDDCNANFRETNFKEWKIVVQEIVRFTKVDTAFAYIRPLRYCAMFD--SH 117
L++ V+D ++ ++ +EW +V+QEI F + D CA F +
Sbjct: 203 FDLIEELLKHVNDYTKIYKPSDAQEWSLVLQEIFSFLQADQ----------CATFSDTNQ 252
Query: 118 AASLPYVAR----------------------------------FHAKKVLKFKDAILTSY 143
+ SL F + + AIL
Sbjct: 253 SPSLTNSGNIINNNSNSNNNNGEHTNNTVQSHRLNHLNCPSPPFPLESTQILQQAILVGS 312
Query: 144 HRNEVKFAELTLDTYRMLQCLEWEPTGSFYQK-RPVLPNDHSGASIDHSGTSGVIDINFV 202
+N++KF+E+TLD +RM Q LE+EP + + + + + N
Sbjct: 313 QQNQIKFSEITLDMFRMTQSLEYEPMSEAKENDMKLKQQLTALQQQQQQQAAEAKEKNNG 372
Query: 203 ADMTDPSLPP-------------------------NPRKAVLYRPSATHLLAVIATVCEE 237
D + ++P NP K +LYRP+ + +L ++ +E
Sbjct: 373 TDQQNTTIPSQPLQQHLHHQQQQQQNGNGSGIKKRNPHKYLLYRPTISQILLFLSYSFKE 432
Query: 238 LPPESIMLLYLSSSGKAGHSN 258
L MLLY+ + G N
Sbjct: 433 LGDNKAMLLYICADGFTNEDN 453
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 84/197 (42%), Gaps = 11/197 (5%)
Query: 314 NGDRNNLYPGDILPFTRRPLFLIVDSDISHAFKVIHGAEKGETAALLLSPLRPAFKDPSS 373
N +LYP D+LPF R+P FLIV+S S F + + +S L P
Sbjct: 574 NTKVESLYPMDLLPFCRKPFFLIVNSQSSDIFNELPTFNQP-----FVSLLSPQSIPKKL 628
Query: 374 ADTTQYGSQFTFFLTAPLQAFCQMVGISSSDANVDIYNDAESILSTSFSEWEVLLCTSTS 433
+ G+ FTFFL P+ AFC + + +N+ + S LL
Sbjct: 629 VSNLKCGNLFTFFLHDPISAFCDIS--CGNKIPSKTFNNISLLAQNSLEIISKLLFECVD 686
Query: 434 LDLVWAQVLSDPFLRRVILRFILCRCVFFHFFPPEASEEYLPV-CLPQLPSCFSPKSDVV 492
L ++ L D FLR I+RFI C F + E + V P LP ++
Sbjct: 687 LHPSFSFFLLDDFLRSFIIRFIFCHATF--YLHKEFQDNIYQVKSNPPLPKSLLYNQSIL 744
Query: 493 QSCVRRLANHLGVADYF 509
+S + +L + L V+D F
Sbjct: 745 KS-IHQLVSELDVSDQF 760
>sp|P23008|POLG_HRV1A Genome polyprotein (Fragments) OS=Human rhinovirus 1A PE=1 SV=2
Length = 833
Score = 36.6 bits (83), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 44 ARFLLVSLILNRTEMVKFL-----VDRFRDLVDDCNANFRETNFKEWKIVVQEIVRFTKV 98
R+++ S + + FL V R VD + N ++ NF +WKI +QE+ + +
Sbjct: 599 TRYVITSQTRDEMSIESFLGRSGCVHISRIKVDYTDYNGQDINFTKWKITLQEMAQIRRK 658
Query: 99 DTAFAYIRPLRYCAMFDSHAASLPYVA 125
F Y+R FDS +P +A
Sbjct: 659 FELFTYVR-------FDSEITLVPCIA 678
>sp|Q9UBK2|PRGC1_HUMAN Peroxisome proliferator-activated receptor gamma coactivator
1-alpha OS=Homo sapiens GN=PPARGC1A PE=1 SV=1
Length = 798
Score = 33.1 bits (74), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Query: 157 TYRMLQCLEWEPTGSFYQKRPVLPNDHSGASIDHSGTSGV--IDINFVADMTDPSLPPNP 214
T Q L+ +PT P PND G+ ++ ++++ A +T P+ PP+
Sbjct: 244 TQSQSQHLQAKPTTLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLTPPTTPPH- 302
Query: 215 RKAVLYRP--SATHLLAVIATVCEELPPESIMLLYLSSSGKAGHSNVPQG 262
KA P ++ L + TV +PP S Y SSG G+++ +G
Sbjct: 303 -KANQDNPFRASPKLKSSCKTV---VPPPSKKPRYSESSGTQGNNSTKKG 348
>sp|Q865B6|PRGC1_PIG Peroxisome proliferator-activated receptor gamma coactivator
1-alpha OS=Sus scrofa GN=PPARGC1A PE=2 SV=1
Length = 796
Score = 32.7 bits (73), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 157 TYRMLQCLEWEPTGSFYQKRPVLPNDHSGASIDHSGTSGV--IDINFVADMTDPSLPPNP 214
T Q L+ +PT P PND G+ ++ ++++ A +T P+ PP+
Sbjct: 242 TQSQSQHLQAKPTSLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLTPPTTPPH- 300
Query: 215 RKAVLYRP--SATHLLAVIATVCEELPPESIMLLYLSSSGKAGHSNVPQG 262
KA P ++ L TV +PP S Y SSG G+++ +G
Sbjct: 301 -KANQDNPFRASPKLKPPCKTV---VPPPSKKTRYSESSGTHGNNSTKKG 346
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,758,634
Number of Sequences: 539616
Number of extensions: 8222780
Number of successful extensions: 17128
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 17107
Number of HSP's gapped (non-prelim): 17
length of query: 514
length of database: 191,569,459
effective HSP length: 122
effective length of query: 392
effective length of database: 125,736,307
effective search space: 49288632344
effective search space used: 49288632344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)