Query 010281
Match_columns 514
No_of_seqs 79 out of 81
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 22:41:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010281.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010281hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12070 DUF3550: Protein of u 100.0 6E-166 1E-170 1311.8 37.7 430 1-468 77-513 (513)
2 PF01650 Peptidase_C13: Peptid 35.4 1.4E+02 0.0031 30.4 7.6 40 216-255 74-120 (256)
3 PHA02902 putative IMV membrane 25.4 1.2E+02 0.0027 25.3 4.2 48 444-493 4-51 (70)
4 KOG0783 Uncharacterized conser 24.0 65 0.0014 38.6 3.1 14 321-334 1009-1022(1267)
5 cd00228 eu-GS Eukaryotic Gluta 20.4 1.5E+02 0.0033 33.2 5.0 55 386-452 40-100 (471)
6 PRK03625 tatE twin arginine tr 19.1 1.6E+02 0.0034 24.6 3.6 38 46-83 12-49 (67)
7 PRK00102 rnc ribonuclease III; 18.5 1.5E+02 0.0033 28.8 4.1 24 435-458 40-63 (229)
8 PRK02958 tatA twin arginine tr 17.4 1.8E+02 0.0038 24.8 3.6 36 46-81 12-47 (73)
9 KOG2280 Vacuolar assembly/sort 17.3 1.4E+02 0.003 35.4 3.9 46 57-102 357-402 (829)
10 PF12632 Vezatin: Mysoin-bindi 17.1 97 0.0021 31.4 2.4 59 33-95 180-245 (252)
No 1
>PF12070 DUF3550: Protein of unknown function (DUF3550/UPF0682); InterPro: IPR022709 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 249 to 606 amino acids in length.
Probab=100.00 E-value=6.4e-166 Score=1311.84 Aligned_cols=430 Identities=49% Similarity=0.811 Sum_probs=401.4
Q ss_pred CCcccccchhhHHHHHHHHhhCCCcccccc-ccccccc--cccchhHHHHHHHHHhcchhhHHHHHHHHHHhHHhhhhcc
Q 010281 1 MRTSEARFIVEAYVFYEAILSRKYFEGAKV-KQLGVRF--KELRFYARFLLVSLILNRTEMVKFLVDRFRDLVDDCNANF 77 (514)
Q Consensus 1 LRTSet~yL~Eay~FYeAI~~R~Yf~~~~~-~d~~l~~--KkLRyyARFivVcLLLnr~~~V~~Lv~el~~~v~ey~~~~ 77 (514)
||||||+||+|||+||||||+|+||+++++ +.+++|+ ||||||||||||||||||||||++||+||+++||||+++|
T Consensus 77 LRTse~~yL~Ea~~FY~AI~~R~Yf~~~~~~~~~dl~~~~K~LR~~ARFivVcLlLnr~~~V~~Lv~el~~~v~dy~~~~ 156 (513)
T PF12070_consen 77 LRTSETNYLNEAYIFYEAIRSRGYFKDASKEEKPDLMVPNKQLRYYARFIVVCLLLNRMEMVKDLVRELSKLVDDYTSTY 156 (513)
T ss_pred HHhccccHHHHHHHHHHHHHhhhhccccccccccccchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 799999999999999999999999999774 4477788 9999999999999999999999999999999999999999
Q ss_pred CcCCcchhHHHHHHHHhhhccccceeecccccccccccC--CCCCCCcccccccccccccceeeeecCCCCceeccchhh
Q 010281 78 RETNFKEWKIVVQEIVRFTKVDTAFAYIRPLRYCAMFDS--HAASLPYVARFHAKKVLKFKDAILTSYHRNEVKFAELTL 155 (514)
Q Consensus 78 ~~~d~~EW~lVlqEi~~Fl~Ad~~~~~~~pl~~s~~~d~--~p~~~P~~~~~~~~~~L~L~daiLvg~~~nqVKFSELTL 155 (514)
+++|++||++|+|||++|++||+.+++++|++|+.++|+ +|.++|++++++.++.|+|+||||||||+||||||||||
T Consensus 157 ~~~d~~EW~lVlqEI~~Fl~Ad~~~~v~~~~~~~~~~~~rl~~~~~p~~~~~~~~~~L~L~daiLvg~~~nQVKFSELTL 236 (513)
T PF12070_consen 157 QESDQKEWSLVLQEIKRFLKADSAVMVLRPDRYSVVLSHRLNPLSIPPVERSPFSRPLKLQDAILVGNCHNQVKFSELTL 236 (513)
T ss_pred CCcCcccHHHHHHHHHHHHhCcccceeecCCCCceeeCCCCCccCCCcccccCCCCcceeeheeeeccccccccccchhH
Confidence 999999999999999999999999999999999999999 899999999999998999999999999999999999999
Q ss_pred hHHHHhHHhhcccCCCccccCCCCCCCCCCCccCCCCCCCcccccccccCCCCCCCCCCCceeecCCCHHHHHHHHHHhh
Q 010281 156 DTYRMLQCLEWEPTGSFYQKRPVLPNDHSGASIDHSGTSGVIDINFVADMTDPSLPPNPRKAVLYRPSATHLLAVIATVC 235 (514)
Q Consensus 156 DmfRMlQ~LE~ep~~~~~q~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~~~~NPhKyLLYrPT~sqll~fLAt~~ 235 (514)
|||||||||||||+|++||... .++|...++.++.| +.+|++||++|+||||||||||||+||++||||+|
T Consensus 237 DmFRMLQ~LE~EP~~~~~~~~~----~~~~~~~~~~~~~~-----~~e~~~~p~~~~NPhKyLLYrPT~sqll~~LAt~~ 307 (513)
T PF12070_consen 237 DMFRMLQCLEREPSGSFYQSRA----SENGSNMDHSGSNG-----VQEDITDPSLRPNPHKYLLYRPTFSQLLAFLATAF 307 (513)
T ss_pred HHHHHHHHHhcCCccchhhhcc----cccCCccCCCCCCC-----cccccCCCCCCCCCcceeeecCCHHHHHHHHHHHH
Confidence 9999999999999999999722 23454455545444 78899999999999999999999999999999999
Q ss_pred ccCCCCcEEEEEEecCCCCCCCCCCCCCCCCCCcccCCccceeecccccCCCCCccccCCCCCCCcccccccccCCCCCC
Q 010281 236 EELPPESIMLLYLSSSGKAGHSNVPQGEHSGGSRKSSSSKIVSRISQKQNSSIPEYHVNGKKESSDCYENYLWLGPRGNG 315 (514)
Q Consensus 236 kELP~nsvlLlYlSA~G~~~~~~~~~~~~~~~~~~~d~ggv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~ 315 (514)
||||+||||||||||||+++++++ ..+++||.|||+|+++ ++. .+++++|.++++++
T Consensus 308 kELP~n~~lLlYlSA~G~~~~~~~------~~~~~y~~ggv~t~~~--~~~---------------~~~~~~~~~~~~~~ 364 (513)
T PF12070_consen 308 KELPPNGALLLYLSADGCFSTSKS------DSDGPYDFGGVLTNSN--RDS---------------NNGDCLWKRNQGNK 364 (513)
T ss_pred HhcCCCceEEEEEeccCcccCCCC------CccccCCCCCcCCCCc--ccc---------------cCCcccccCCcccC
Confidence 999999999999999999998763 3556999999998663 222 24567888999999
Q ss_pred CCCCCCCCCcccccCCceEEEEeCCcchhhhhhcccCCCceeEEeeCCCCCCCCCCCCCCC--CCcCchHHHHhhchHHH
Q 010281 316 DRNNLYPGDILPFTRRPLFLIVDSDISHAFKVIHGAEKGETAALLLSPLRPAFKDPSSADT--TQYGSQFTFFLTAPLQA 393 (514)
Q Consensus 316 ~~~cLyPgDL~PFTRkPLFlIVDSdnS~aFk~i~~~~fGqP~v~LlSP~~~~~p~~~~~~~--~~~GSlFTlFL~~PL~A 393 (514)
++|||||||||||||||||||||||||+||++||+ +||||+|||||| ..+|++.+ +. +++||+||+||||||+|
T Consensus 365 ~~~~LyP~DL~PFTRkPLFlIVDSdnS~aF~~l~~-~fGqP~v~LlSP--~~~p~~~~-~~~~~~~GslFT~FL~~Pl~A 440 (513)
T PF12070_consen 365 EMHCLYPGDLYPFTRKPLFLIVDSDNSHAFKNLPN-EFGQPLVCLLSP--KSIPKPLS-DQSSSHRGSLFTLFLHAPLQA 440 (513)
T ss_pred CCcccchhhccccccCCeEEEEeCCccHHhhhccc-ccCCeEEEEeCC--cccCcccc-cccccccchHHHHHHhCHHHH
Confidence 99999999999999999999999999999999996 999999999999 89999888 55 89999999999999999
Q ss_pred HHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHHHHHHHHHHhhcCCCC
Q 010281 394 FCQMVGISSSDANVDIYNDAESILSTSFSEWEVLLCTSTSLDLVWAQVLSDPFLRRVILRFILCRCVFFHFFPPE 468 (514)
Q Consensus 394 FC~i~gl~~~~i~~~~~~~~q~~l~~~l~e~~~~L~~s~~ld~~~~qfl~D~FLR~LilRFIFC~~vL~lh~~f~ 468 (514)
||++||++ +|++++||+||++++++++||+++|++|++||++|+|||||||||+||||||||++||+|||.||
T Consensus 441 FC~i~~~~--~i~~~~~e~~e~~l~~~l~e~~~~l~~s~~ld~~~~qfl~D~FLR~LilRFIFC~~vl~lHr~fr 513 (513)
T PF12070_consen 441 FCRICGLS--DIPKDTWERCEKILSRFLNEWSRLLTRSRSLDPSWAQFLGDPFLRLLILRFIFCRAVLRLHRAFR 513 (513)
T ss_pred HHHHcCCC--cCCHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999996
No 2
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=35.44 E-value=1.4e+02 Score=30.41 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=31.1
Q ss_pred ceeecCCCHHHHHHHHHHhhc-------cCCCCcEEEEEEecCCCCC
Q 010281 216 KAVLYRPSATHLLAVIATVCE-------ELPPESIMLLYLSSSGKAG 255 (514)
Q Consensus 216 KyLLYrPT~sqll~fLAt~~k-------ELP~nsvlLlYlSA~G~~~ 255 (514)
+|=...-|..+++.+|.---. ...++..|+||++..|..+
T Consensus 74 DY~g~~v~~~~fl~vL~G~~~~~~~kvl~s~~~D~vfiy~~~HG~~~ 120 (256)
T PF01650_consen 74 DYRGEDVTPENFLNVLTGDKSVPSGKVLNSTENDNVFIYFTGHGGPG 120 (256)
T ss_pred cccccccCHHHHHHHhcCCCCCCccccccCCCCCeEEEEEeccCCCC
Confidence 355567799999999874333 6688999999999999654
No 3
>PHA02902 putative IMV membrane protein; Provisional
Probab=25.43 E-value=1.2e+02 Score=25.30 Aligned_cols=48 Identities=10% Similarity=0.146 Sum_probs=38.4
Q ss_pred ChHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCCCCCCCCCCCChhhH
Q 010281 444 DPFLRRVILRFILCRCVFFHFFPPEASEEYLPVCLPQLPSCFSPKSDVVQ 493 (514)
Q Consensus 444 D~FLR~LilRFIFC~~vL~lh~~f~~~~~~~P~c~P~LP~~~~~~s~~lq 493 (514)
|-|.=+++.=-|||..+..++|.++.-+. |+--+..+.+.++..+.++
T Consensus 4 dtfvi~~v~v~Ivclliya~YrR~kci~s--P~~~d~~~~~~l~~d~~F~ 51 (70)
T PHA02902 4 DTFVILAVIVIIFCLLIYAAYKRYKCIPS--PDDRDERFGDTLEDDPLFK 51 (70)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCccccccccCCCCchhh
Confidence 77888999999999999999999987333 7888888877777665543
No 4
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=23.96 E-value=65 Score=38.64 Aligned_cols=14 Identities=36% Similarity=0.743 Sum_probs=13.5
Q ss_pred CCCCcccccCCceE
Q 010281 321 YPGDILPFTRRPLF 334 (514)
Q Consensus 321 yPgDL~PFTRkPLF 334 (514)
-||||.|.+|+|+|
T Consensus 1009 ~~~~l~P~e~~p~~ 1022 (1267)
T KOG0783|consen 1009 GPGALQPVEATPTF 1022 (1267)
T ss_pred Cccccccccccccc
Confidence 78999999999999
No 5
>cd00228 eu-GS Eukaryotic Glutathione Synthetase (eu-GS); catalyses the production of glutathione from gamma-glutamylcysteine and glycine in an ATP-dependent manner. Belongs to the ATP-grasp superfamily.
Probab=20.42 E-value=1.5e+02 Score=33.21 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=41.3
Q ss_pred HhhchHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHH------hcCChHHHHHHH
Q 010281 386 FLTAPLQAFCQMVGISSSDANVDIYNDAESILSTSFSEWEVLLCTSTSLDLVWAQ------VLSDPFLRRVIL 452 (514)
Q Consensus 386 FL~~PL~AFC~i~gl~~~~i~~~~~~~~q~~l~~~l~e~~~~L~~s~~ld~~~~q------fl~D~FLR~Lil 452 (514)
+-|+|++ +.++.+|++.|++|.. ++..++++- ...+.|..|++ .=.|+|.++|+=
T Consensus 40 ~~~aP~t-------L~Ptpfpr~~f~~a~~-~q~~~neL~----~~vs~D~~fL~~~l~~~~~~D~Ft~~L~~ 100 (471)
T cd00228 40 ASHAPFT-------LLPSPFPEALFEQAVE-VQPDFNELV----DRISQDGKFLQQSLSSTKKVDEFTSRLLD 100 (471)
T ss_pred eeeCCEE-------ecCCCCCHHHHHHHHH-HHHHHHHHH----HHHhccHHHHHHHHHhhhcccHHHHHHHH
Confidence 5578854 5678999999999977 666677643 44445888888 457999999864
No 6
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=19.05 E-value=1.6e+02 Score=24.61 Aligned_cols=38 Identities=8% Similarity=0.131 Sum_probs=31.2
Q ss_pred HHHHHHHhcchhhHHHHHHHHHHhHHhhhhccCcCCcc
Q 010281 46 FLLVSLILNRTEMVKFLVDRFRDLVDDCNANFRETNFK 83 (514)
Q Consensus 46 FivVcLLLnr~~~V~~Lv~el~~~v~ey~~~~~~~d~~ 83 (514)
.++|+||+-..+-..+|.+.+.+-+.++++..++.+..
T Consensus 12 IlvI~lllFGpkKLp~lg~~lGk~i~~Fk~~~~~~~~~ 49 (67)
T PRK03625 12 VAALVVLLFGTKKLRTLGGDLGAAIKGFKKAMNDDDAA 49 (67)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 46788888888878999999999999888888776644
No 7
>PRK00102 rnc ribonuclease III; Reviewed
Probab=18.52 E-value=1.5e+02 Score=28.77 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.1
Q ss_pred chhHHHhcCChHHHHHHHHHHHHH
Q 010281 435 DLVWAQVLSDPFLRRVILRFILCR 458 (514)
Q Consensus 435 d~~~~qfl~D~FLR~LilRFIFC~ 458 (514)
+.--+.||||-.|+..+.+|+|.+
T Consensus 40 ~nerLefLGDavl~~~v~~~l~~~ 63 (229)
T PRK00102 40 HNERLEFLGDAVLELVVSEYLFKR 63 (229)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHH
Confidence 567789999999999999999873
No 8
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=17.44 E-value=1.8e+02 Score=24.79 Aligned_cols=36 Identities=11% Similarity=0.237 Sum_probs=30.0
Q ss_pred HHHHHHHhcchhhHHHHHHHHHHhHHhhhhccCcCC
Q 010281 46 FLLVSLILNRTEMVKFLVDRFRDLVDDCNANFRETN 81 (514)
Q Consensus 46 FivVcLLLnr~~~V~~Lv~el~~~v~ey~~~~~~~d 81 (514)
.++|+|||-..+-..+|.+.+.+-|.++++..++.+
T Consensus 12 Il~IvlllFG~kKLPelgr~lGkair~FK~~~~~~~ 47 (73)
T PRK02958 12 VLVIVVLVFGTKKLRNIGSDLGGAVKGFKDGMKEGE 47 (73)
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhcccc
Confidence 567788888888899999999999999888776543
No 9
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=17.31 E-value=1.4e+02 Score=35.44 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHhHHhhhhccCcCCcchhHHHHHHHHhhhccccce
Q 010281 57 EMVKFLVDRFRDLVDDCNANFRETNFKEWKIVVQEIVRFTKVDTAF 102 (514)
Q Consensus 57 ~~V~~Lv~el~~~v~ey~~~~~~~d~~EW~lVlqEi~~Fl~Ad~~~ 102 (514)
|+..+++++|.+-|+||+.+--.+=+-||+-+|-+.++|.||-.-.
T Consensus 357 e~L~~~~e~L~~aV~~CI~aA~~ef~pe~QK~LL~AAsfGk~~l~~ 402 (829)
T KOG2280|consen 357 EYLSEIREDLYKAVDDCIEAACDEFQPEEQKSLLRAASFGKASLRT 402 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHhhccccccc
Confidence 4566777789999999999999999999999999999999998743
No 10
>PF12632 Vezatin: Mysoin-binding motif of peroxisomes
Probab=17.06 E-value=97 Score=31.42 Aligned_cols=59 Identities=22% Similarity=0.477 Sum_probs=36.5
Q ss_pred ccccccccchhHHHHHHHHH-hcchh------hHHHHHHHHHHhHHhhhhccCcCCcchhHHHHHHHHhh
Q 010281 33 LGVRFKELRFYARFLLVSLI-LNRTE------MVKFLVDRFRDLVDDCNANFRETNFKEWKIVVQEIVRF 95 (514)
Q Consensus 33 ~~l~~KkLRyyARFivVcLL-Lnr~~------~V~~Lv~el~~~v~ey~~~~~~~d~~EW~lVlqEi~~F 95 (514)
+.....++.+.-||.+.||| ++..+ .+.++ ++....++--..+. .+ ++|+.|.+++.+.
T Consensus 180 Lk~l~~r~~~lRK~~LC~LLSl~~~g~~~~~~~~~~~--~f~~~~~~~~~~~~-~~-~r~~~~~~~l~~l 245 (252)
T PF12632_consen 180 LKFLFQRFEFLRKLFLCCLLSLNADGPDSSNFFLSKL--EFNRYFETQFPSYF-QQ-KRWNTVVEALRSL 245 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchhhhh--HhhhHHHhhccccc-cc-ccHHHHHHHHHHH
Confidence 55566678888899999999 66422 22223 45444444222222 11 2999999998765
Done!