Query 010281
Match_columns 514
No_of_seqs 79 out of 81
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 03:23:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010281.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010281hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vc3_B L-aspartate-alpha-decar 21.0 56 0.0019 27.9 2.7 39 304-342 32-89 (96)
2 2c45_A Aspartate 1-decarboxyla 19.9 58 0.002 29.5 2.7 41 304-344 56-115 (139)
3 1s4k_A Putative cytoplasmic pr 15.4 1E+02 0.0036 27.2 3.2 39 50-88 55-104 (120)
4 2l16_A SEC-independent protein 14.6 1.1E+02 0.0039 24.8 3.0 48 46-93 13-68 (78)
5 1pqh_A Aspartate 1-decarboxyla 11.1 1.4E+02 0.0048 27.2 2.7 41 303-343 72-131 (143)
6 4f6o_A Metacaspase-1; rossmann 10.1 2.3E+02 0.008 28.9 4.4 35 220-254 107-141 (350)
7 3bij_A Uncharacterized protein 9.5 2.3E+02 0.0078 27.4 3.9 33 222-254 55-87 (285)
8 1wlq_C CDT1 protein; coiled-co 9.4 1.9E+02 0.0067 27.5 3.2 28 467-494 174-201 (201)
9 3l32_A Phosphoprotein; antipar 8.7 1.4E+02 0.0047 22.2 1.4 16 81-96 26-41 (45)
10 2hgs_A Protein (glutathione sy 8.5 3E+02 0.01 29.4 4.6 55 386-452 45-105 (474)
No 1
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=21.00 E-value=56 Score=27.91 Aligned_cols=39 Identities=28% Similarity=0.497 Sum_probs=29.3
Q ss_pred ccccccCCCCCCC-------CCCCCCCCccc------------ccCCceEEEEeCCcc
Q 010281 304 ENYLWLGPRGNGD-------RNNLYPGDILP------------FTRRPLFLIVDSDIS 342 (514)
Q Consensus 304 ~~~l~~g~~~~~~-------~~cLyPgDL~P------------FTRkPLFlIVDSdnS 342 (514)
+-++-.|++|++. .|+..|||++= =+-||-.++||.+|-
T Consensus 32 ~TYvI~GerGSG~I~lNGAAArl~~~GD~vII~aY~~~~~~e~~~~~P~vV~vd~~N~ 89 (96)
T 1vc3_B 32 TTYALPGERGSGVIGINGAAAHLVKPGDLVILVAYGVFDEEEARNLKPTVVLVDERNR 89 (96)
T ss_dssp EEECEEECTTTTCEEEEGGGGGTCCTTCEEEEEEEEEECHHHHTTCCCEEEEECTTCC
T ss_pred EEEEEEccCCCCeEEEchHHHccCCCCCEEEEEECccCCHHHHhcCCCEEEEECCCCC
Confidence 4445557777754 68889999874 366899999999884
No 2
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=19.92 E-value=58 Score=29.50 Aligned_cols=41 Identities=29% Similarity=0.425 Sum_probs=29.0
Q ss_pred ccccccCCCCCCC-------CCCCCCCCccc------------ccCCceEEEEeCCcchh
Q 010281 304 ENYLWLGPRGNGD-------RNNLYPGDILP------------FTRRPLFLIVDSDISHA 344 (514)
Q Consensus 304 ~~~l~~g~~~~~~-------~~cLyPgDL~P------------FTRkPLFlIVDSdnS~a 344 (514)
+-++-.|++|++. .++..|||++= -+-||-.++||-+|-..
T Consensus 56 eTYvI~GerGSG~I~lNGAAArl~~~GD~vII~aYa~~~~~E~~~~~P~vV~vd~~N~i~ 115 (139)
T 2c45_A 56 VTYAITGERGSGVIGINGAAAHLVHPGDLVILIAYATMDDARARTYQPRIVFVDAYNKPI 115 (139)
T ss_dssp EECEEEECTTTTCEEEESSTTTTSCTTCEEEEEECCEEEHHHHHSCCCEEEECCTTCC--
T ss_pred EEEEEEccCCCCEEEEchHHHccCCCCCEEEEEECCcCCHHHhccCCCeEEEECCCCCEE
Confidence 4455557777643 78999999872 15689999999998654
No 3
>1s4k_A Putative cytoplasmic protein YDIL; structural genomics, MCSG, PSI, PROT structure initiative; 1.90A {Salmonella typhimurium} SCOP: a.35.1.6
Probab=15.44 E-value=1e+02 Score=27.23 Aligned_cols=39 Identities=23% Similarity=0.508 Sum_probs=30.2
Q ss_pred HHHhcchhhHHHHHHHHHHh-----------HHhhhhccCcCCcchhHHH
Q 010281 50 SLILNRTEMVKFLVDRFRDL-----------VDDCNANFRETNFKEWKIV 88 (514)
Q Consensus 50 cLLLnr~~~V~~Lv~el~~~-----------v~ey~~~~~~~d~~EW~lV 88 (514)
.+...|.+++.++++++... .++|...|-+.|+.||++-
T Consensus 55 ~m~~~R~~~i~~i~~kin~~ig~nt~r~f~d~~af~~~y~~~~~l~Wriy 104 (120)
T 1s4k_A 55 EMKARRQRRINAIVDKINNRIGNNTMRYFPDLSSFQSIYTEGDFIEWKIY 104 (120)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSCCEECCCSSHHHHHTTSTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCceeeecCCHHHHHhhcCCCCeeeehhh
Confidence 35567778888888877665 4667888888999999863
No 4
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=14.59 E-value=1.1e+02 Score=24.82 Aligned_cols=48 Identities=10% Similarity=0.011 Sum_probs=18.4
Q ss_pred HHHHHHHhcchhhHHHHHHHHHHhHH-------hhhhccCc-CCcchhHHHHHHHH
Q 010281 46 FLLVSLILNRTEMVKFLVDRFRDLVD-------DCNANFRE-TNFKEWKIVVQEIV 93 (514)
Q Consensus 46 FivVcLLLnr~~~V~~Lv~el~~~v~-------ey~~~~~~-~d~~EW~lVlqEi~ 93 (514)
.+||+||+-..+-..++.+.+.+-+. +-+...++ .+..|+..+-+|+.
T Consensus 13 IlvVaLlvfGpkkLP~l~r~lGk~ir~fK~~~~~~~~e~~~~~~~~el~~~~~~~~ 68 (78)
T 2l16_A 13 IFVIALIIFGPSKLPEIGRAAGRTLLEFKSATKSLVSGDEKEEKSAELTAVKQDKN 68 (78)
T ss_dssp HHHHHHHHSCTTTHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------
T ss_pred HHHHHhheeCccHhHHHHHHHHHHHHHHHHHHHHhHhhhhHHhhHHHHHHHHHHHH
Confidence 45677777776655555555555444 44433332 23445555555543
No 5
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=11.06 E-value=1.4e+02 Score=27.16 Aligned_cols=41 Identities=24% Similarity=0.281 Sum_probs=30.2
Q ss_pred cccccccCCCCCCC-------CCCCCCCCccc------------ccCCceEEEEeCCcch
Q 010281 303 YENYLWLGPRGNGD-------RNNLYPGDILP------------FTRRPLFLIVDSDISH 343 (514)
Q Consensus 303 ~~~~l~~g~~~~~~-------~~cLyPgDL~P------------FTRkPLFlIVDSdnS~ 343 (514)
-+-++-.|++|++. .++..|||++= -+-||-.++||-+|-.
T Consensus 72 feTYvI~GerGSG~I~lNGAAArl~~~GD~VII~sYa~~~~~E~~~~~P~VV~vd~~N~i 131 (143)
T 1pqh_A 72 FSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEM 131 (143)
T ss_dssp EEEEEEEECTTCCCEECCGGGGGTCCTTCEEEEEEEEEEEHHHHTTCCCEEEEEETTTEE
T ss_pred EEEEEEEccCCCceEEechHHHccCCCCCEEEEEECccCCHHHhccCCCeEEEECCCCCE
Confidence 34455557777654 68889999874 3569999999999853
No 6
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=10.15 E-value=2.3e+02 Score=28.93 Aligned_cols=35 Identities=14% Similarity=0.346 Sum_probs=31.9
Q ss_pred cCCCHHHHHHHHHHhhccCCCCcEEEEEEecCCCC
Q 010281 220 YRPSATHLLAVIATVCEELPPESIMLLYLSSSGKA 254 (514)
Q Consensus 220 YrPT~sqll~fLAt~~kELP~nsvlLlYlSA~G~~ 254 (514)
..||-..++..|..-+++.-++-++++|.|+.|.-
T Consensus 107 ~~pTr~nI~~aL~~L~~~a~pgD~llfYFSGHG~q 141 (350)
T 4f6o_A 107 RVPTRANMIRAMQWLVKDAQPNDSLFLHYSGHGGQ 141 (350)
T ss_dssp GSCCHHHHHHHHHHHHTTCCTTCEEEEEEESCEEE
T ss_pred cCCCHHHHHHHHHHHHHhCCCCCEEEEEEcCCcee
Confidence 47999999999999999998999999999999963
No 7
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}
Probab=9.45 E-value=2.3e+02 Score=27.43 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHhhccCCCCcEEEEEEecCCCC
Q 010281 222 PSATHLLAVIATVCEELPPESIMLLYLSSSGKA 254 (514)
Q Consensus 222 PT~sqll~fLAt~~kELP~nsvlLlYlSA~G~~ 254 (514)
||-..++..|..-++++-++-++++|.|+.|..
T Consensus 55 ~t~~~i~~al~~l~~~~~~~D~~~~yfSGHG~~ 87 (285)
T 3bij_A 55 ATRAKVIDAIGKAAKALGKGDIFMLSYSGHGGQ 87 (285)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCEEEEEEESCEEE
T ss_pred cCHHHHHHHHHHHHHhCCCCCEEEEEEcCCccc
Confidence 888999988888888898999999999999953
No 8
>1wlq_C CDT1 protein; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_C*
Probab=9.38 E-value=1.9e+02 Score=27.54 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=18.7
Q ss_pred CCCCCCCCCccCCCCCCCCCCCChhhHH
Q 010281 467 PEASEEYLPVCLPQLPSCFSPKSDVVQS 494 (514)
Q Consensus 467 f~~~~~~~P~c~P~LP~~~~~~s~~lq~ 494 (514)
.|=.++|-....|.+|..++++.|...|
T Consensus 174 ~RWHP~F~ld~vp~I~~a~LP~pP~~ek 201 (201)
T 1wlq_C 174 TRWHPRFNVDEVPDIEPAELPQPPVTEK 201 (201)
T ss_dssp CSCCTTCCGGGSCCCCCCCCCCCCC---
T ss_pred cccCCCCCcccCCCCCcCCCCCCCCCCC
Confidence 3444567777888888888888887653
No 9
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=8.71 E-value=1.4e+02 Score=22.20 Aligned_cols=16 Identities=38% Similarity=0.684 Sum_probs=13.7
Q ss_pred CcchhHHHHHHHHhhh
Q 010281 81 NFKEWKIVVQEIVRFT 96 (514)
Q Consensus 81 d~~EW~lVlqEi~~Fl 96 (514)
=++-|+++++||..++
T Consensus 26 FfKiWS~~~e~I~sYV 41 (45)
T 3l32_A 26 FLKIWSQTVEEIVSYV 41 (45)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3678999999999875
No 10
>2hgs_A Protein (glutathione synthetase); amine/carboxylate ligase; HET: ADP GSH; 2.10A {Homo sapiens} SCOP: c.30.1.4 d.142.1.6
Probab=8.53 E-value=3e+02 Score=29.38 Aligned_cols=55 Identities=16% Similarity=0.171 Sum_probs=37.9
Q ss_pred HhhchHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHhc------CChHHHHHHH
Q 010281 386 FLTAPLQAFCQMVGISSSDANVDIYNDAESILSTSFSEWEVLLCTSTSLDLVWAQVL------SDPFLRRVIL 452 (514)
Q Consensus 386 FL~~PL~AFC~i~gl~~~~i~~~~~~~~q~~l~~~l~e~~~~L~~s~~ld~~~~qfl------~D~FLR~Lil 452 (514)
.-|+|++ +.++.+|++.|++|.. ++..++++--.+ +.|..|.+=- .|||.++|+-
T Consensus 45 ~~~aP~t-------L~PspfPr~~f~~a~~-~q~~~n~L~~~v----s~D~~fL~~~l~~~~~~D~Ft~~L~~ 105 (474)
T 2hgs_A 45 VSYAPFT-------LFPSLVPSALLEQAYA-VQMDFNLLVDAV----SQNAAFLEQTLSSTIKQDDFTARLFD 105 (474)
T ss_dssp EEECCEE-------SSCCEECHHHHHHHHH-THHHHHHHHHHH----HHCHHHHHHHHHTHHHHCHHHHHHHH
T ss_pred eEecCEE-------ecCCcCCHHHHHHHHH-HHHHHHHHHHHH----hcCHHHHHHHHHHHcccCHHHHHHHH
Confidence 3466654 4567899999999985 455566643333 3477777543 8999999863
Done!