Query 010281
Match_columns 514
No_of_seqs 79 out of 81
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 03:23:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010281.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010281hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1no1a_ a.179.1.1 (A:) Repliso 21.2 26 0.0019 25.3 2.5 31 61-91 5-39 (67)
2 d1r3sa_ c.1.22.1 (A:) Uroporph 8.7 2.5E+02 0.018 25.5 6.4 69 386-454 144-226 (356)
3 d1y0ua_ a.4.5.5 (A:) Putative 6.7 1.4E+02 0.01 22.8 2.8 19 436-455 22-40 (89)
4 d1t3ka_ c.46.1.1 (A:) Dual spe 6.7 1.2E+02 0.0088 23.5 2.6 33 318-350 8-42 (132)
5 d1s3ja_ a.4.5.28 (A:) Putative 6.6 1.5E+02 0.011 23.1 3.1 43 57-99 101-143 (143)
6 d1o0wa1 a.149.1.1 (A:-1-167) R 6.5 93 0.0068 25.6 1.8 24 435-458 51-74 (169)
7 d1u0la2 c.37.1.8 (A:69-293) Pr 6.0 1.5E+02 0.011 26.2 2.9 63 39-102 26-99 (225)
8 d1ppya_ b.52.2.1 (A:) Pyruvoyl 5.9 1.2E+02 0.0088 24.6 2.1 39 304-342 56-113 (118)
9 d1uxoa_ c.69.1.31 (A:) Hypothe 5.7 84 0.0061 24.6 1.0 26 72-97 160-185 (186)
10 d1x9fc_ a.1.1.2 (C:) Extracell 5.7 3.6E+02 0.026 21.0 5.1 45 21-67 48-97 (149)
No 1
>d1no1a_ a.179.1.1 (A:) Replisome organizer (g39p helicase loader/inhibitor protein) {Bacteriophage Spp1 [TaxId: 10724]}
Probab=21.22 E-value=26 Score=25.31 Aligned_cols=31 Identities=19% Similarity=0.405 Sum_probs=21.8
Q ss_pred HHHHHHHHhHHhhhhccCcCCcch----hHHHHHH
Q 010281 61 FLVDRFRDLVDDCNANFRETNFKE----WKIVVQE 91 (514)
Q Consensus 61 ~Lv~el~~~v~ey~~~~~~~d~~E----W~lVlqE 91 (514)
+.|+-|++--+=|-.+|+++|.+. |-.|+-|
T Consensus 5 dvvqilkavsefypgrfqpddlkgtvkawhrvlae 39 (67)
T d1no1a_ 5 DVVQILKAVSEFYPGRFQPDDLKGTVKAWHRVLAE 39 (67)
T ss_dssp HHHHHHHHHHHHSTTTCCCTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCCccccchHHHHHHHHHHH
Confidence 444445544444999999999765 9999755
No 2
>d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.70 E-value=2.5e+02 Score=25.47 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=42.7
Q ss_pred HhhchHHHHHHHhcCCCCC----------CChHHHHHHHHHHHHHHHHHHHHHhhcCC----cchhHHHhcCChHHHHHH
Q 010281 386 FLTAPLQAFCQMVGISSSD----------ANVDIYNDAESILSTSFSEWEVLLCTSTS----LDLVWAQVLSDPFLRRVI 451 (514)
Q Consensus 386 FL~~PL~AFC~i~gl~~~~----------i~~~~~~~~q~~l~~~l~e~~~~L~~s~~----ld~~~~qfl~D~FLR~Li 451 (514)
|..+|++..+++++-.+.. -.++.|.+.-+++.++..+..+....+.- +.-+|+-.++.+..+...
T Consensus 144 f~ggP~Tla~yli~~~~~~~~~~~~~~~~~~pe~~~~ll~~lt~~~~~~~~~qi~aGad~i~ifDs~a~~l~~~~~~~~~ 223 (356)
T d1r3sa_ 144 FAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFA 223 (356)
T ss_dssp EEECHHHHHHHHHHSSCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHT
T ss_pred eeechHHHHHHHHhcccchhHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHhhcccccceecccccccccHHHHHHHH
Confidence 3455777788888644211 14466777777777777777665544432 466788777776655555
Q ss_pred HHH
Q 010281 452 LRF 454 (514)
Q Consensus 452 lRF 454 (514)
+.|
T Consensus 224 ~~~ 226 (356)
T d1r3sa_ 224 LPY 226 (356)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 3
>d1y0ua_ a.4.5.5 (A:) Putative arsenical resistance operon repressor AF0168 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.70 E-value=1.4e+02 Score=22.77 Aligned_cols=19 Identities=32% Similarity=0.663 Sum_probs=13.4
Q ss_pred hhHHHhcCChHHHHHHHHHH
Q 010281 436 LVWAQVLSDPFLRRVILRFI 455 (514)
Q Consensus 436 ~~~~qfl~D~FLR~LilRFI 455 (514)
--|...+..| +|+=|||||
T Consensus 22 kry~~av~nP-vRrkiLrmi 40 (89)
T d1y0ua_ 22 KRYNYAVTNP-VRRKILRML 40 (89)
T ss_dssp HHHHHHHSCH-HHHHHHHHH
T ss_pred HHHHHHHhhH-HHHHHHHHH
Confidence 3344566666 688899998
No 4
>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=6.70 E-value=1.2e+02 Score=23.47 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=28.3
Q ss_pred CCCCCCCcccccCCceEEEEeCCcchhhh--hhcc
Q 010281 318 NNLYPGDILPFTRRPLFLIVDSDISHAFK--VIHG 350 (514)
Q Consensus 318 ~cLyPgDL~PFTRkPLFlIVDSdnS~aFk--~i~~ 350 (514)
.-|.|.+|+...+.|=++|||-.+...|+ +|||
T Consensus 8 ~~I~~~el~~~~~~~~v~iIDvR~~~e~~~ghIpg 42 (132)
T d1t3ka_ 8 SYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAG 42 (132)
T ss_dssp EEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCS
T ss_pred CEECHHHHHHHHhCCCeEEEEccCHHHHHhccCcc
Confidence 45788999999999999999999998887 4555
No 5
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=6.64 E-value=1.5e+02 Score=23.10 Aligned_cols=43 Identities=5% Similarity=0.057 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHhHHhhhhccCcCCcchhHHHHHHHHhhhccc
Q 010281 57 EMVKFLVDRFRDLVDDCNANFRETNFKEWKIVVQEIVRFTKVD 99 (514)
Q Consensus 57 ~~V~~Lv~el~~~v~ey~~~~~~~d~~EW~lVlqEi~~Fl~Ad 99 (514)
+++..+-.......++....+.+++..++..+++.+.+.++.|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~kl~~~le~~ 143 (143)
T d1s3ja_ 101 IKFEEVLAGRKAIMARYLSFLTEEEMLQAAHITAKLAQAAETD 143 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHccC
Confidence 4455555556666666777788888888888888888888765
No 6
>d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]}
Probab=6.49 E-value=93 Score=25.63 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=19.8
Q ss_pred chhHHHhcCChHHHHHHHHHHHHH
Q 010281 435 DLVWAQVLSDPFLRRVILRFILCR 458 (514)
Q Consensus 435 d~~~~qfl~D~FLR~LilRFIFC~ 458 (514)
+.-=..|+||-+|+..+.+++|.+
T Consensus 51 ~nerLefLGDavL~~~v~~~l~~~ 74 (169)
T d1o0wa1 51 SNEKLEFLGDAVLELFVCEILYKK 74 (169)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHh
Confidence 344488999999999999998875
No 7
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=6.02 E-value=1.5e+02 Score=26.20 Aligned_cols=63 Identities=14% Similarity=0.284 Sum_probs=37.4
Q ss_pred ccchhHHHHHHH--------HHhcchhhHH-HHHHHHHHhHHhhhhccCc--CCcchhHHHHHHHHhhhccccce
Q 010281 39 ELRFYARFLLVS--------LILNRTEMVK-FLVDRFRDLVDDCNANFRE--TNFKEWKIVVQEIVRFTKVDTAF 102 (514)
Q Consensus 39 kLRyyARFivVc--------LLLnr~~~V~-~Lv~el~~~v~ey~~~~~~--~d~~EW~lVlqEi~~Fl~Ad~~~ 102 (514)
.+++.-||||.| ++|||.|++. +-..++....+.|...|.. ...++ ..-++++..+++.-+.+
T Consensus 26 ~~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa~~-~~g~~~L~~~l~~kt~~ 99 (225)
T d1u0la2 26 STYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKT-GMGIEELKEYLKGKIST 99 (225)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTT-CTTHHHHHHHHSSSEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEEecccc-chhHhhHHHHhcCCeEE
Confidence 567889999987 6799999864 3344455555555555432 11111 12256777777655444
No 8
>d1ppya_ b.52.2.1 (A:) Pyruvoyl dependent aspartate decarboxylase, ADC {Escherichia coli [TaxId: 562]}
Probab=5.91 E-value=1.2e+02 Score=24.64 Aligned_cols=39 Identities=26% Similarity=0.263 Sum_probs=25.0
Q ss_pred ccccccCCCCCCC-------CCCCCCCCccc------------ccCCceEEEEeCCcc
Q 010281 304 ENYLWLGPRGNGD-------RNNLYPGDILP------------FTRRPLFLIVDSDIS 342 (514)
Q Consensus 304 ~~~l~~g~~~~~~-------~~cLyPgDL~P------------FTRkPLFlIVDSdnS 342 (514)
+-++--|++|++. .|.-.|||.+= =.-||=.++||-+|-
T Consensus 56 ~TYvI~g~~gSg~I~lNGaAAr~~~~GD~vII~sya~~~~~e~~~~~P~vv~~d~~N~ 113 (118)
T d1ppya_ 56 STYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNE 113 (118)
T ss_dssp EEEEEEECTTCCCEECTTTTGGGCCTTCEEEEEEEEEEEHHHHHTCCCEEEEEETTTE
T ss_pred EEEEEEcCCCCCEEEecChhheecCCCCEEEEEEcccCCHHHHhcCCCEEEEECCCCC
Confidence 3344445666532 68889999861 234688888887773
No 9
>d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]}
Probab=5.74 E-value=84 Score=24.64 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=18.8
Q ss_pred hhhhccCcCCcchhHHHHHHHHhhhc
Q 010281 72 DCNANFRETNFKEWKIVVQEIVRFTK 97 (514)
Q Consensus 72 ey~~~~~~~d~~EW~lVlqEi~~Fl~ 97 (514)
+..+....+...+|++++++|++|+.
T Consensus 160 ~~gH~~~~~~~~~~~~~~~~l~~~~~ 185 (186)
T d1uxoa_ 160 HGGHFLEDEGFTSLPIVYDVLTSYFS 185 (186)
T ss_dssp TCTTSCGGGTCSCCHHHHHHHHHHHH
T ss_pred CCCCcCccccCcccHHHHHHHHHHHc
Confidence 33443334466899999999999984
No 10
>d1x9fc_ a.1.1.2 (C:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C) {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}
Probab=5.66 E-value=3.6e+02 Score=20.96 Aligned_cols=45 Identities=11% Similarity=0.143 Sum_probs=22.5
Q ss_pred hCCCccccccccccccccccchhHHHHH-----HHHHhcchhhHHHHHHHHH
Q 010281 21 SRKYFEGAKVKQLGVRFKELRFYARFLL-----VSLILNRTEMVKFLVDRFR 67 (514)
Q Consensus 21 ~R~Yf~~~~~~d~~l~~KkLRyyARFiv-----VcLLLnr~~~V~~Lv~el~ 67 (514)
.|.||+....++. -..++|.+|.=++ +.-.|+..+.+...+++|.
T Consensus 48 ~k~~F~~~~~~~~--~~~~~~~Ha~~v~~~l~~~I~~ldd~~~l~~~L~~lg 97 (149)
T d1x9fc_ 48 VNDLFKRVDIEHA--EGPKFSAHALRILNGLDLAINLLDDPPALDAALDHLA 97 (149)
T ss_dssp HHHHTGGGTGGGT--TSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHhccccccccc--ccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3567865432222 2346777765554 2233555555555555543
Done!