BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010285
(513 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P53564|CUX1_MOUSE Homeobox protein cut-like 1 OS=Mus musculus GN=Cux1 PE=1 SV=3
Length = 1515
Score = 38.9 bits (89), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 389 TKAKVKEMMAVLKDVESA-------QIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCV 441
T AK E+ ++ D+E A Q + + LR L+ + +++ ++Q Q KA V
Sbjct: 222 TTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQ-----KAPDV 276
Query: 442 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELES----NRLEQIIQATQ 497
+ T+ LE ELA KE+E+A L E V + +A L+ L S ++LEQ + A
Sbjct: 277 AIEVLTRSSLEV---ELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLNAKN 333
Query: 498 SKVTKFSQK 506
S + + +K
Sbjct: 334 STLKQLEEK 342
>sp|P39880|CUX1_HUMAN Homeobox protein cut-like 1 OS=Homo sapiens GN=CUX1 PE=1 SV=3
Length = 1505
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 17/129 (13%)
Query: 389 TKAKVKEMMAVLKDVESA-------QIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCV 441
T AK E+ ++ D+E A Q + + LR L+ + +++ ++Q Q + +
Sbjct: 222 TTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVE-QAI 280
Query: 442 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELES----NRLEQIIQATQ 497
+L T+ LE ELA KE+E+A L E V + +A L+ L S ++LEQ + A
Sbjct: 281 EVL--TRSSLEV---ELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKN 335
Query: 498 SKVTKFSQK 506
S + + +K
Sbjct: 336 STLKQLEEK 344
>sp|Q4P0N6|NDE1_USTMA Nuclear distribution protein nudE homolog 1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=NDE1 PE=3 SV=1
Length = 646
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 10/109 (9%)
Query: 390 KAKVKEMMAVLKDVESAQID-VDWLRNILNEISEAIEFSTQHQTIDAAKANCVNL---LE 445
K+KV +M L++ ES+ D V+ + + E+ + E S ++TI K L LE
Sbjct: 32 KSKVADMQDALRETESSLQDFVESSKELEQEMEK--ELSASNKTISDLKRRNEQLSGDLE 89
Query: 446 STKKELESQMNE----LALKEKEVAGLKESVAKTKARLSDLELESNRLE 490
K + ++E L +KE+ L+ESV KA+L D EL ++ LE
Sbjct: 90 DWKSKYSRALSEHNATLTTLQKELGQLRESVDIYKAKLRDTELTNDELE 138
>sp|Q8NUV0|PLS_STAAW Putative surface protein MW2416 OS=Staphylococcus aureus (strain MW2)
GN=MW2416 PE=4 SV=1
Length = 1371
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 25/119 (21%)
Query: 129 NPYHECGEHCFKRNGEANARG------VNKESGSWSFGRKNKASDSQPGTPLTPRAVDKV 182
NP + GE K+ G+ ++ VN +G K + QP +T + VDK+
Sbjct: 1210 NPKLQPGEERVKQEGQPGSKTITTPITVNPLTGE-------KVGEGQPTEEITKQPVDKI 1262
Query: 183 A-VGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKEKVRSTQSV 240
GG+K PK EN + SRP H S ++P++ L+K++ + + V
Sbjct: 1263 VEFGGEK-----------PKDPKGPENPEKPSRPTHPSGPVNPDNPGLSKDRAKPNEPV 1310
>sp|Q9EP71|RAI14_MOUSE Ankycorbin OS=Mus musculus GN=Rai14 PE=1 SV=1
Length = 979
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 19/104 (18%)
Query: 416 ILNEISEAIEFSTQHQTIDAAKANCVNL---------LESTKKELESQMN----ELALKE 462
+LNE+++ Q +DA K N V++ L +T KE+E +++ LA KE
Sbjct: 708 VLNELTQL------KQLVDAHKENSVSITEHLQVITTLRTTAKEMEEKISALTGHLANKE 761
Query: 463 KEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQK 506
EVA L++ +A+ KA +SD + + E++ + +S+V + K
Sbjct: 762 AEVAKLEKQLAEEKAAVSDAMVPKSSYEKLQASLESEVNALATK 805
>sp|B8ITX3|MCH_METNO Methenyltetrahydromethanopterin cyclohydrolase OS=Methylobacterium
nodulans (strain ORS2060 / LMG 21967) GN=mch PE=3 SV=1
Length = 324
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 206 SENGKSFSRPEHFSREIHPEDHSLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPG 265
S G++ + EH E+H +D+++ V + S PP+ + + P E+VT +
Sbjct: 119 SGPGRAAAAVEHLFEELHYKDNAVQIALVLESASAPPASVVAKVAEAAGVPLEAVTFIYA 178
Query: 266 ASPSKNGKDNKVQAPIEIH-HSTEDGGEDIPSPADG 300
+ S G V +E+ H G D+ DG
Sbjct: 179 PTQSLAGSTQVVARVLEVALHKAHSVGFDLAKIVDG 214
>sp|P08226|APOE_MOUSE Apolipoprotein E OS=Mus musculus GN=Apoe PE=1 SV=2
Length = 311
Score = 32.7 bits (73), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 410 VDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLK 469
+ W++ + +++ E ++ S Q + A + + +++ KKELE Q+ +A E+ A L
Sbjct: 47 LRWVQTLSDQVQEELQSSQVTQELTALMEDTMTEVKAYKKELEEQLGPVA--EETRARLG 104
Query: 470 ESVAKTKARL-SDLELESNRLEQ 491
+ V +ARL +D+E NRL Q
Sbjct: 105 KEVQAAQARLGADMEDLRNRLGQ 127
>sp|Q5R8V1|CASP_PONAB Protein CASP OS=Pongo abelii GN=CUTL1 PE=2 SV=1
Length = 678
Score = 32.3 bits (72), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 19/130 (14%)
Query: 389 TKAKVKEMMAVLKDVESA-------QIDVDWLRNILNEISEAIEFSTQHQTI-DAAKANC 440
T AK E+ ++ D+E A Q + + LR L+ + +++ ++Q Q D +A
Sbjct: 233 TTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQA-- 290
Query: 441 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELES----NRLEQIIQAT 496
+ +L T+ LE ELA KE+E+A L E V + +A L+ L S ++LEQ + A
Sbjct: 291 IEVL--TRSSLEV---ELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAK 345
Query: 497 QSKVTKFSQK 506
S + + +K
Sbjct: 346 NSTLKQLEEK 355
>sp|P70403|CASP_MOUSE Protein CASP OS=Mus musculus GN=Cux1 PE=2 SV=2
Length = 678
Score = 32.3 bits (72), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 19/130 (14%)
Query: 389 TKAKVKEMMAVLKDVESA-------QIDVDWLRNILNEISEAIEFSTQHQTI-DAAKANC 440
T AK E+ ++ D+E A Q + + LR L+ + +++ ++Q Q D +A
Sbjct: 233 TTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQA-- 290
Query: 441 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELES----NRLEQIIQAT 496
+ +L T+ LE ELA KE+E+A L E V + +A L+ L S ++LEQ + A
Sbjct: 291 IEVL--TRSSLEV---ELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLNAK 345
Query: 497 QSKVTKFSQK 506
S + + +K
Sbjct: 346 NSTLKQLEEK 355
>sp|Q13948|CASP_HUMAN Protein CASP OS=Homo sapiens GN=CUX1 PE=1 SV=2
Length = 678
Score = 32.3 bits (72), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 19/130 (14%)
Query: 389 TKAKVKEMMAVLKDVESA-------QIDVDWLRNILNEISEAIEFSTQHQTI-DAAKANC 440
T AK E+ ++ D+E A Q + + LR L+ + +++ ++Q Q D +A
Sbjct: 233 TTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQA-- 290
Query: 441 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELES----NRLEQIIQAT 496
+ +L T+ LE ELA KE+E+A L E V + +A L+ L S ++LEQ + A
Sbjct: 291 IEVL--TRSSLEV---ELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAK 345
Query: 497 QSKVTKFSQK 506
S + + +K
Sbjct: 346 NSTLKQLEEK 355
>sp|Q931E9|PLS_STAAM Putative surface protein SAV2496/SAV2497 OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=SAV2496/SAV2497 PE=4 SV=2
Length = 1114
Score = 32.3 bits (72), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 25/119 (21%)
Query: 129 NPYHECGEHCFKRNGEANARG------VNKESGSWSFGRKNKASDSQPGTPLTPRAVDKV 182
NP + GE K+ G+ ++ VN +G K + QP +T + VDK+
Sbjct: 953 NPKLQPGEERVKQEGQPGSKTITTPITVNPLTGE-------KVGEGQPTEEITKQPVDKI 1005
Query: 183 A-VGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKEKVRSTQSV 240
GG+K PK EN + SRP H S ++P + L+K++ + V
Sbjct: 1006 VEFGGEK-----------PKDPKGPENPEKPSRPTHPSGPVNPNNPGLSKDRAKPNGPV 1053
>sp|P61598|PLS_STAAN Putative surface protein SA2285 OS=Staphylococcus aureus (strain
N315) GN=SA2285 PE=1 SV=1
Length = 1370
Score = 32.3 bits (72), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 25/119 (21%)
Query: 129 NPYHECGEHCFKRNGEANARG------VNKESGSWSFGRKNKASDSQPGTPLTPRAVDKV 182
NP + GE K+ G+ ++ VN +G K + QP +T + VDK+
Sbjct: 1209 NPKLQPGEERVKQEGQPGSKTITTPITVNPLTGE-------KVGEGQPTEEITKQPVDKI 1261
Query: 183 A-VGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKEKVRSTQSV 240
GG+K PK EN + SRP H S ++P + L+K++ + V
Sbjct: 1262 VEFGGEK-----------PKDPKGPENPEKPSRPTHPSGPVNPNNPGLSKDRAKPNGPV 1309
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.125 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189,497,691
Number of Sequences: 539616
Number of extensions: 8138852
Number of successful extensions: 26103
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 514
Number of HSP's that attempted gapping in prelim test: 24852
Number of HSP's gapped (non-prelim): 1804
length of query: 513
length of database: 191,569,459
effective HSP length: 122
effective length of query: 391
effective length of database: 125,736,307
effective search space: 49162896037
effective search space used: 49162896037
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)