Query 010286
Match_columns 513
No_of_seqs 469 out of 2486
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 22:45:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010286.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010286hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1731 FAD-dependent sulfhydr 100.0 5.7E-96 1E-100 755.1 26.1 443 43-512 36-604 (606)
2 PF04777 Evr1_Alr: Erv1 / Alr 99.9 8.2E-29 1.8E-33 208.3 3.1 88 314-406 1-95 (95)
3 cd03006 PDI_a_EFP1_N PDIa fami 99.8 1.6E-20 3.4E-25 162.7 11.3 105 44-170 7-113 (113)
4 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 9.5E-20 2.1E-24 154.6 11.9 99 47-169 2-100 (101)
5 KOG3355 Mitochondrial sulfhydr 99.8 4.5E-20 9.7E-25 164.3 7.5 73 315-387 76-154 (177)
6 KOG0190 Protein disulfide isom 99.8 9.8E-20 2.1E-24 190.8 10.4 114 44-178 23-136 (493)
7 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 3.9E-19 8.5E-24 151.5 11.1 102 47-170 2-104 (104)
8 PF00085 Thioredoxin: Thioredo 99.8 6.2E-19 1.4E-23 149.0 12.2 103 48-173 1-103 (103)
9 cd03002 PDI_a_MPD1_like PDI fa 99.8 7.3E-19 1.6E-23 150.9 12.0 107 48-170 2-108 (109)
10 cd02996 PDI_a_ERp44 PDIa famil 99.8 6.7E-19 1.5E-23 151.3 11.6 107 47-170 2-108 (108)
11 PTZ00443 Thioredoxin domain-co 99.8 1.5E-18 3.3E-23 167.5 13.4 110 45-176 29-141 (224)
12 COG5054 ERV1 Mitochondrial sul 99.8 4.2E-19 9E-24 157.3 7.5 73 315-387 85-163 (181)
13 KOG0910 Thioredoxin-like prote 99.8 8.6E-19 1.9E-23 155.5 9.4 106 47-175 44-149 (150)
14 cd03007 PDI_a_ERp29_N PDIa fam 99.8 1.6E-18 3.5E-23 149.6 10.4 103 47-173 2-115 (116)
15 cd02994 PDI_a_TMX PDIa family, 99.8 3.4E-18 7.5E-23 144.9 11.2 100 47-172 2-101 (101)
16 cd03065 PDI_b_Calsequestrin_N 99.8 3.4E-18 7.3E-23 149.3 10.4 108 45-174 8-119 (120)
17 cd03005 PDI_a_ERp46 PDIa famil 99.7 7.9E-18 1.7E-22 142.4 10.4 101 48-170 2-102 (102)
18 cd02956 ybbN ybbN protein fami 99.7 1.2E-17 2.6E-22 140.1 11.0 96 54-171 1-96 (96)
19 cd02992 PDI_a_QSOX PDIa family 99.7 1.9E-17 4.2E-22 143.9 12.6 89 46-139 1-89 (114)
20 cd02999 PDI_a_ERp44_like PDIa 99.7 9.9E-18 2.2E-22 142.3 9.8 94 54-170 7-100 (100)
21 PTZ00102 disulphide isomerase; 99.7 3E-17 6.5E-22 176.9 15.6 112 45-178 31-142 (477)
22 cd03001 PDI_a_P5 PDIa family, 99.7 2.9E-17 6.4E-22 139.2 11.7 101 48-170 2-102 (103)
23 cd02993 PDI_a_APS_reductase PD 99.7 3.4E-17 7.4E-22 141.1 11.2 105 47-170 2-109 (109)
24 PRK09381 trxA thioredoxin; Pro 99.7 6.2E-17 1.4E-21 139.2 12.0 107 45-174 2-108 (109)
25 cd02962 TMX2 TMX2 family; comp 99.7 7.1E-17 1.5E-21 146.9 12.9 89 45-141 27-121 (152)
26 cd02963 TRX_DnaJ TRX domain, D 99.7 2.9E-17 6.3E-22 142.1 9.8 103 49-172 7-110 (111)
27 cd02954 DIM1 Dim1 family; Dim1 99.7 6.3E-17 1.4E-21 139.3 11.5 81 53-142 2-82 (114)
28 COG3118 Thioredoxin domain-con 99.7 3.7E-17 8E-22 159.7 11.2 110 45-176 22-132 (304)
29 KOG0190 Protein disulfide isom 99.7 2E-17 4.2E-22 173.6 9.4 125 30-175 348-474 (493)
30 cd02997 PDI_a_PDIR PDIa family 99.7 6.7E-17 1.5E-21 137.1 10.7 103 48-170 2-104 (104)
31 PHA02278 thioredoxin-like prot 99.7 9.5E-17 2.1E-21 136.8 9.9 95 53-169 4-100 (103)
32 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 1.3E-16 2.9E-21 135.2 10.8 104 47-170 1-104 (104)
33 cd02985 TRX_CDSP32 TRX family, 99.7 1.7E-16 3.7E-21 135.4 10.6 98 52-171 2-100 (103)
34 TIGR01126 pdi_dom protein disu 99.7 2.2E-16 4.9E-21 133.2 11.1 102 51-174 1-102 (102)
35 PRK10996 thioredoxin 2; Provis 99.7 4.3E-16 9.3E-21 140.3 12.1 106 45-174 34-139 (139)
36 cd02998 PDI_a_ERp38 PDIa famil 99.7 4.6E-16 9.9E-21 132.0 11.3 104 48-170 2-105 (105)
37 TIGR00424 APS_reduc 5'-adenyly 99.7 4.1E-16 8.9E-21 164.7 12.7 111 44-172 349-461 (463)
38 cd02948 TRX_NDPK TRX domain, T 99.7 6.4E-16 1.4E-20 131.6 11.0 97 51-172 5-101 (102)
39 cd03000 PDI_a_TMX3 PDIa family 99.6 1.6E-15 3.4E-20 129.5 10.6 97 54-173 7-103 (104)
40 KOG0907 Thioredoxin [Posttrans 99.6 1.1E-15 2.5E-20 130.4 9.0 92 57-172 13-104 (106)
41 PLN02309 5'-adenylylsulfate re 99.6 2.6E-15 5.6E-20 158.6 12.5 111 44-173 343-456 (457)
42 TIGR01068 thioredoxin thioredo 99.6 4.4E-15 9.5E-20 124.8 11.2 101 51-174 1-101 (101)
43 PLN00410 U5 snRNP protein, DIM 99.6 3.7E-15 8.1E-20 133.2 11.2 103 52-175 10-121 (142)
44 TIGR01130 ER_PDI_fam protein d 99.6 5.4E-15 1.2E-19 158.3 12.4 112 47-178 2-113 (462)
45 cd02950 TxlA TRX-like protein 99.6 9.6E-15 2.1E-19 132.0 12.1 102 53-176 10-112 (142)
46 cd02957 Phd_like Phosducin (Ph 99.6 5.1E-15 1.1E-19 128.4 9.9 84 47-141 5-89 (113)
47 cd02961 PDI_a_family Protein D 99.6 7.5E-15 1.6E-19 122.6 10.5 100 50-170 2-101 (101)
48 cd02965 HyaE HyaE family; HyaE 99.6 6.9E-15 1.5E-19 125.9 9.8 96 48-167 12-109 (111)
49 KOG4277 Uncharacterized conser 99.6 1.4E-15 2.9E-20 147.0 5.5 92 65-176 43-134 (468)
50 PTZ00102 disulphide isomerase; 99.6 1.1E-14 2.4E-19 157.0 12.3 123 34-176 344-467 (477)
51 cd02953 DsbDgamma DsbD gamma f 99.6 1.6E-14 3.5E-19 123.1 10.1 97 54-170 2-103 (104)
52 cd02984 TRX_PICOT TRX domain, 99.6 1.7E-14 3.7E-19 120.9 10.1 78 53-139 2-79 (97)
53 cd02986 DLP Dim1 family, Dim1- 99.6 1.5E-14 3.2E-19 123.8 9.4 79 53-140 2-80 (114)
54 cd02989 Phd_like_TxnDC9 Phosdu 99.5 2.7E-14 5.9E-19 123.9 10.4 83 47-141 5-88 (113)
55 KOG0912 Thiol-disulfide isomer 99.5 1.2E-14 2.6E-19 141.1 8.9 109 51-177 1-109 (375)
56 KOG0908 Thioredoxin-like prote 99.5 3.9E-14 8.4E-19 134.3 9.5 104 51-178 7-110 (288)
57 cd02949 TRX_NTR TRX domain, no 99.5 1.9E-13 4.1E-18 115.1 10.3 93 56-171 5-97 (97)
58 PTZ00051 thioredoxin; Provisio 99.5 1.9E-13 4.1E-18 114.9 9.2 77 52-140 7-83 (98)
59 cd02987 Phd_like_Phd Phosducin 99.5 3.2E-13 7E-18 126.2 10.8 110 45-172 61-173 (175)
60 TIGR01130 ER_PDI_fam protein d 99.5 3.5E-13 7.5E-18 144.3 12.1 125 34-178 333-458 (462)
61 cd02947 TRX_family TRX family; 99.4 1.4E-12 3.1E-17 106.6 9.6 92 54-170 1-92 (93)
62 cd02975 PfPDO_like_N Pyrococcu 99.4 1.5E-12 3.3E-17 113.0 10.0 97 56-175 15-111 (113)
63 KOG0191 Thioredoxin/protein di 99.4 1.2E-12 2.6E-17 137.5 10.4 107 49-178 32-138 (383)
64 cd02951 SoxW SoxW family; SoxW 99.4 2.3E-12 5.1E-17 113.5 10.1 102 55-175 5-120 (125)
65 TIGR01295 PedC_BrcD bacterioci 99.4 2.9E-12 6.3E-17 112.7 10.0 99 48-170 8-120 (122)
66 cd02952 TRP14_like Human TRX-r 99.3 2.7E-12 5.9E-17 111.8 8.4 80 52-138 8-100 (119)
67 KOG0191 Thioredoxin/protein di 99.3 5.6E-12 1.2E-16 132.4 10.8 111 47-177 145-255 (383)
68 cd02988 Phd_like_VIAF Phosduci 99.3 1E-11 2.3E-16 117.6 10.7 108 45-172 81-190 (192)
69 PRK03147 thiol-disulfide oxido 99.3 5.4E-11 1.2E-15 110.5 13.9 106 46-172 44-170 (173)
70 TIGR02738 TrbB type-F conjugat 99.3 4.2E-11 9E-16 109.3 12.2 87 66-173 51-152 (153)
71 cd02982 PDI_b'_family Protein 99.3 3.1E-11 6.8E-16 102.2 10.4 89 65-173 12-102 (103)
72 PRK14018 trifunctional thiored 99.3 3.4E-11 7.4E-16 129.1 12.8 90 64-172 55-171 (521)
73 PRK15412 thiol:disulfide inter 99.3 6.6E-11 1.4E-15 111.8 13.2 89 64-175 67-177 (185)
74 TIGR00411 redox_disulf_1 small 99.2 3.9E-11 8.5E-16 97.2 9.2 80 68-173 2-81 (82)
75 TIGR02187 GlrX_arch Glutaredox 99.2 7.9E-11 1.7E-15 113.9 9.8 90 66-175 20-112 (215)
76 cd02959 ERp19 Endoplasmic reti 99.2 4.5E-11 9.8E-16 104.3 6.8 79 55-141 7-90 (117)
77 PRK00293 dipZ thiol:disulfide 99.1 2.2E-10 4.7E-15 125.9 10.9 103 52-173 459-569 (571)
78 cd03009 TryX_like_TryX_NRX Try 99.1 3.9E-10 8.5E-15 100.0 9.2 74 64-141 17-113 (131)
79 TIGR00385 dsbE periplasmic pro 99.1 6.1E-10 1.3E-14 104.0 10.4 88 65-175 63-172 (173)
80 PTZ00062 glutaredoxin; Provisi 99.1 4.7E-10 1E-14 106.9 9.6 91 52-175 5-95 (204)
81 TIGR02740 TraF-like TraF-like 99.1 6.2E-10 1.3E-14 111.2 10.7 97 58-175 159-265 (271)
82 PRK13728 conjugal transfer pro 99.1 1.3E-09 2.8E-14 101.5 12.0 87 69-176 73-173 (181)
83 PF13098 Thioredoxin_2: Thiore 99.1 2.5E-10 5.3E-15 98.3 6.6 90 64-170 4-112 (112)
84 cd03010 TlpA_like_DsbE TlpA-li 99.0 8.7E-10 1.9E-14 97.2 8.3 81 64-166 24-126 (127)
85 cd03008 TryX_like_RdCVF Trypar 99.0 1.1E-09 2.4E-14 98.9 9.1 79 62-140 22-125 (146)
86 PHA02125 thioredoxin-like prot 99.0 1E-09 2.2E-14 88.0 7.6 50 69-133 2-51 (75)
87 cd02964 TryX_like_family Trypa 99.0 1.3E-09 2.8E-14 97.1 8.9 75 63-141 15-113 (132)
88 TIGR00412 redox_disulf_2 small 99.0 1.2E-09 2.6E-14 87.8 7.9 54 69-134 2-55 (76)
89 TIGR02187 GlrX_arch Glutaredox 99.0 1.6E-09 3.5E-14 104.7 10.2 81 66-172 134-214 (215)
90 PF13905 Thioredoxin_8: Thiore 99.0 2.2E-09 4.8E-14 89.5 9.5 68 65-137 1-91 (95)
91 cd03011 TlpA_like_ScsD_MtbDsbE 98.9 4.8E-09 1.1E-13 91.7 8.8 96 49-168 6-120 (123)
92 cd02973 TRX_GRX_like Thioredox 98.9 5.4E-09 1.2E-13 81.5 6.7 56 69-134 3-58 (67)
93 cd02955 SSP411 TRX domain, SSP 98.8 1.2E-08 2.7E-13 89.8 8.9 78 53-141 5-94 (124)
94 PLN02919 haloacid dehalogenase 98.8 1.9E-08 4.1E-13 117.9 10.7 93 64-175 419-537 (1057)
95 cd02958 UAS UAS family; UAS is 98.8 4.4E-08 9.5E-13 84.9 10.1 103 54-174 4-111 (114)
96 TIGR01626 ytfJ_HI0045 conserve 98.8 3.7E-08 8E-13 92.3 9.9 88 63-168 57-174 (184)
97 cd02967 mauD Methylamine utili 98.8 1.9E-08 4.1E-13 86.7 7.2 62 65-133 21-83 (114)
98 KOG0913 Thiol-disulfide isomer 98.8 2.3E-09 4.9E-14 101.5 1.4 102 46-173 24-125 (248)
99 COG4232 Thiol:disulfide interc 98.7 8.3E-08 1.8E-12 102.5 12.7 107 49-173 457-567 (569)
100 cd03012 TlpA_like_DipZ_like Tl 98.7 4E-08 8.6E-13 86.7 8.4 71 64-140 22-118 (126)
101 KOG0914 Thioredoxin-like prote 98.7 3.1E-08 6.8E-13 92.6 7.6 90 44-141 122-218 (265)
102 cd02966 TlpA_like_family TlpA- 98.7 5.6E-08 1.2E-12 82.4 8.4 68 65-138 19-108 (116)
103 TIGR02661 MauD methylamine deh 98.7 2.6E-07 5.7E-12 87.5 12.2 70 64-140 73-159 (189)
104 PRK11509 hydrogenase-1 operon 98.6 2E-07 4.4E-12 82.4 10.3 105 48-176 19-126 (132)
105 PTZ00056 glutathione peroxidas 98.6 1.1E-07 2.4E-12 90.9 9.3 62 64-132 38-108 (199)
106 cd03026 AhpF_NTD_C TRX-GRX-lik 98.6 2.1E-07 4.5E-12 77.2 9.3 65 60-134 7-71 (89)
107 PLN02399 phospholipid hydroper 98.6 2.3E-07 4.9E-12 90.6 10.0 105 64-175 98-235 (236)
108 PF13899 Thioredoxin_7: Thiore 98.5 2E-07 4.3E-12 75.9 6.8 63 65-137 17-82 (82)
109 smart00594 UAS UAS domain. 98.5 4.9E-07 1.1E-11 79.4 9.6 105 52-170 12-121 (122)
110 PF08534 Redoxin: Redoxin; In 98.5 3.7E-07 7.9E-12 82.4 8.5 83 51-141 16-128 (146)
111 PLN02412 probable glutathione 98.5 7.7E-07 1.7E-11 82.6 9.1 105 64-175 28-165 (167)
112 cd00340 GSH_Peroxidase Glutath 98.4 9.9E-07 2.1E-11 80.5 8.1 61 64-132 21-91 (152)
113 TIGR02540 gpx7 putative glutat 98.4 2.1E-06 4.6E-11 78.3 10.0 44 63-112 20-63 (153)
114 COG0526 TrxA Thiol-disulfide i 98.3 3.8E-06 8.2E-11 70.5 9.0 66 65-138 32-99 (127)
115 cd02969 PRX_like1 Peroxiredoxi 98.3 6.7E-06 1.4E-10 76.4 10.7 101 65-175 25-153 (171)
116 KOG2603 Oligosaccharyltransfer 98.3 1.1E-05 2.3E-10 79.9 12.2 123 44-175 38-167 (331)
117 cd02960 AGR Anterior Gradient 98.2 2.7E-06 5.8E-11 75.2 7.1 72 55-137 11-88 (130)
118 PTZ00256 glutathione peroxidas 98.2 5.7E-06 1.2E-10 77.9 9.8 58 48-113 25-83 (183)
119 KOG2501 Thioredoxin, nucleored 98.2 2.7E-06 5.8E-11 76.8 6.8 69 65-137 33-124 (157)
120 PF13728 TraF: F plasmid trans 98.2 6.6E-06 1.4E-10 79.5 9.3 94 57-170 112-214 (215)
121 cd01659 TRX_superfamily Thiore 98.2 5.7E-06 1.2E-10 61.4 6.9 60 69-138 1-63 (69)
122 TIGR02196 GlrX_YruB Glutaredox 98.1 7.8E-06 1.7E-10 63.9 6.8 54 69-135 2-57 (74)
123 PF00578 AhpC-TSA: AhpC/TSA fa 98.1 1.1E-05 2.4E-10 70.1 8.2 68 64-137 24-117 (124)
124 cd03017 PRX_BCP Peroxiredoxin 98.0 1.2E-05 2.7E-10 71.6 7.3 69 65-139 23-121 (140)
125 PRK00522 tpx lipid hydroperoxi 98.0 1.8E-05 3.9E-10 73.4 8.4 42 64-113 43-85 (167)
126 TIGR03137 AhpC peroxiredoxin. 98.0 2E-05 4.3E-10 74.6 8.5 94 64-172 30-154 (187)
127 cd03015 PRX_Typ2cys Peroxiredo 98.0 2.5E-05 5.4E-10 72.8 8.8 94 65-173 29-156 (173)
128 PF01216 Calsequestrin: Calseq 97.9 4.4E-05 9.4E-10 76.7 9.7 111 44-178 32-148 (383)
129 TIGR02739 TraF type-F conjugat 97.9 4.4E-05 9.6E-10 75.3 9.4 96 59-174 144-248 (256)
130 cd02970 PRX_like2 Peroxiredoxi 97.9 4.4E-05 9.4E-10 68.6 8.7 42 66-113 24-66 (149)
131 PRK10382 alkyl hydroperoxide r 97.9 4.8E-05 1E-09 71.9 9.2 94 64-172 30-154 (187)
132 COG2143 Thioredoxin-related pr 97.9 0.00019 4.2E-09 64.2 12.0 88 64-170 41-145 (182)
133 PRK13190 putative peroxiredoxi 97.9 5.2E-05 1.1E-09 72.6 8.5 96 64-174 26-154 (202)
134 PRK09437 bcp thioredoxin-depen 97.9 4.3E-05 9.3E-10 69.6 7.5 44 64-113 29-73 (154)
135 PRK10606 btuE putative glutath 97.9 2.9E-05 6.3E-10 73.1 6.4 74 49-132 11-94 (183)
136 cd02991 UAS_ETEA UAS family, E 97.8 0.0001 2.2E-09 64.2 9.1 103 55-174 5-113 (116)
137 TIGR02200 GlrX_actino Glutared 97.8 3.9E-05 8.5E-10 60.8 5.6 54 69-138 2-60 (77)
138 PRK15000 peroxidase; Provision 97.8 8.2E-05 1.8E-09 71.1 8.7 93 65-172 34-160 (200)
139 PF13192 Thioredoxin_3: Thiore 97.8 0.00013 2.7E-09 58.5 8.0 73 70-171 3-76 (76)
140 PRK13703 conjugal pilus assemb 97.8 8.9E-05 1.9E-09 72.8 8.4 89 65-173 143-240 (248)
141 PF07912 ERp29_N: ERp29, N-ter 97.7 0.00052 1.1E-08 59.3 11.7 113 47-180 5-125 (126)
142 cd03018 PRX_AhpE_like Peroxire 97.6 0.0002 4.2E-09 64.6 7.9 42 66-113 29-71 (149)
143 TIGR02180 GRX_euk Glutaredoxin 97.6 0.00012 2.6E-09 59.1 5.3 57 69-134 1-60 (84)
144 cd03014 PRX_Atyp2cys Peroxired 97.6 0.00017 3.6E-09 64.7 6.7 59 64-130 25-85 (143)
145 cd02971 PRX_family Peroxiredox 97.6 0.00018 3.8E-09 64.0 6.6 44 64-113 21-65 (140)
146 PTZ00137 2-Cys peroxiredoxin; 97.5 0.00039 8.4E-09 69.0 9.3 94 65-173 98-224 (261)
147 PRK13599 putative peroxiredoxi 97.5 0.00037 8.1E-09 67.4 8.3 93 65-172 28-154 (215)
148 PF14595 Thioredoxin_9: Thiore 97.5 0.00042 9.1E-09 61.5 7.7 76 51-137 28-106 (129)
149 cd03016 PRX_1cys Peroxiredoxin 97.4 0.00055 1.2E-08 65.6 8.7 93 66-173 26-153 (203)
150 cd03023 DsbA_Com1_like DsbA fa 97.4 0.00091 2E-08 60.1 9.6 30 65-94 5-34 (154)
151 PF06110 DUF953: Eukaryotic pr 97.4 0.0007 1.5E-08 59.0 8.3 77 54-137 6-98 (119)
152 PRK11200 grxA glutaredoxin 1; 97.4 0.00075 1.6E-08 55.1 8.0 79 68-175 2-84 (85)
153 PRK10877 protein disulfide iso 97.4 0.00075 1.6E-08 66.1 9.0 83 64-173 106-230 (232)
154 PF02114 Phosducin: Phosducin; 97.4 0.00047 1E-08 68.6 7.4 111 46-173 125-237 (265)
155 PTZ00253 tryparedoxin peroxida 97.3 0.00083 1.8E-08 64.1 8.7 94 64-172 35-162 (199)
156 PRK13191 putative peroxiredoxi 97.3 0.00075 1.6E-08 65.3 8.4 94 65-173 33-160 (215)
157 PRK13189 peroxiredoxin; Provis 97.3 0.00075 1.6E-08 65.6 8.4 94 65-173 35-162 (222)
158 PF03190 Thioredox_DsbH: Prote 97.3 0.0012 2.7E-08 60.5 8.6 79 50-139 24-114 (163)
159 cd03020 DsbA_DsbC_DsbG DsbA fa 97.3 0.00058 1.3E-08 65.0 6.7 25 65-89 77-101 (197)
160 cd02968 SCO SCO (an acronym fo 97.3 0.0005 1.1E-08 61.3 5.7 47 64-113 21-68 (142)
161 KOG3425 Uncharacterized conser 97.1 0.00092 2E-08 57.3 5.5 76 54-136 13-103 (128)
162 PF13848 Thioredoxin_6: Thiore 97.1 0.0041 8.9E-08 57.7 10.6 107 45-172 76-184 (184)
163 cd02981 PDI_b_family Protein D 97.0 0.0073 1.6E-07 50.1 10.3 89 54-172 8-96 (97)
164 cd03067 PDI_b_PDIR_N PDIb fami 97.0 0.0054 1.2E-07 51.1 8.4 97 53-172 9-110 (112)
165 PF13462 Thioredoxin_4: Thiore 96.9 0.0073 1.6E-07 54.9 10.1 44 64-112 11-54 (162)
166 TIGR03143 AhpF_homolog putativ 96.7 0.0058 1.3E-07 67.6 8.8 78 66-170 476-554 (555)
167 TIGR02183 GRXA Glutaredoxin, G 96.6 0.0067 1.4E-07 49.7 6.6 58 69-134 2-63 (86)
168 KOG3414 Component of the U4/U6 96.6 0.012 2.6E-07 51.0 8.0 78 53-139 11-88 (142)
169 PRK11657 dsbG disulfide isomer 96.6 0.015 3.3E-07 57.6 10.1 84 65-171 117-249 (251)
170 cd03419 GRX_GRXh_1_2_like Glut 96.5 0.0033 7.2E-08 50.4 4.2 55 69-134 2-59 (82)
171 PF00462 Glutaredoxin: Glutare 96.5 0.011 2.3E-07 44.7 6.7 53 69-134 1-55 (60)
172 KOG0911 Glutaredoxin-related p 96.5 0.0035 7.6E-08 59.8 4.5 65 64-138 16-80 (227)
173 cd02976 NrdH NrdH-redoxin (Nrd 96.4 0.0078 1.7E-07 46.5 5.5 53 69-134 2-56 (73)
174 PRK15317 alkyl hydroperoxide r 96.4 0.014 3.1E-07 63.9 9.3 83 66-175 117-199 (517)
175 cd02972 DsbA_family DsbA famil 96.2 0.017 3.7E-07 46.9 7.0 60 69-135 1-90 (98)
176 PF02966 DIM1: Mitosis protein 96.0 0.042 9.2E-07 48.2 8.6 77 52-138 7-84 (133)
177 cd03019 DsbA_DsbA DsbA family, 96.0 0.033 7.2E-07 51.4 8.6 31 65-95 15-45 (178)
178 cd03072 PDI_b'_ERp44 PDIb' fam 95.9 0.13 2.7E-06 44.3 11.0 104 48-175 1-109 (111)
179 KOG1672 ATP binding protein [P 95.8 0.013 2.9E-07 54.6 4.7 78 52-141 73-150 (211)
180 cd02066 GRX_family Glutaredoxi 95.6 0.031 6.6E-07 42.8 5.7 53 69-134 2-56 (72)
181 PF11009 DUF2847: Protein of u 95.4 0.086 1.9E-06 44.9 7.9 83 52-141 6-91 (105)
182 TIGR03140 AhpF alkyl hydropero 95.3 0.079 1.7E-06 58.1 9.5 83 66-175 118-200 (515)
183 cd02983 P5_C P5 family, C-term 95.3 0.12 2.5E-06 45.9 8.8 109 47-178 3-119 (130)
184 cd03073 PDI_b'_ERp72_ERp57 PDI 95.0 0.35 7.6E-06 41.6 10.8 100 49-173 2-110 (111)
185 TIGR02190 GlrX-dom Glutaredoxi 94.9 0.078 1.7E-06 42.5 6.0 54 68-134 9-63 (79)
186 PHA03050 glutaredoxin; Provisi 94.7 0.08 1.7E-06 45.4 6.0 56 69-134 15-75 (108)
187 PF05768 DUF836: Glutaredoxin- 94.7 0.11 2.5E-06 41.9 6.6 80 69-171 2-81 (81)
188 PHA03005 sulfhydryl oxidase; P 94.6 0.086 1.9E-06 43.1 5.4 66 315-380 9-78 (96)
189 PF07449 HyaE: Hydrogenase-1 e 94.5 0.099 2.2E-06 44.7 6.1 83 47-141 10-95 (107)
190 KOG3171 Conserved phosducin-li 94.4 0.11 2.4E-06 49.1 6.6 110 47-173 139-250 (273)
191 PF13848 Thioredoxin_6: Thiore 94.2 0.22 4.8E-06 46.0 8.4 71 83-178 8-79 (184)
192 PRK10329 glutaredoxin-like pro 94.1 0.17 3.7E-06 40.9 6.3 74 69-174 3-77 (81)
193 TIGR02181 GRX_bact Glutaredoxi 94.0 0.069 1.5E-06 42.5 3.9 53 69-134 1-55 (79)
194 TIGR02189 GlrX-like_plant Glut 93.8 0.078 1.7E-06 44.7 3.9 53 69-134 10-67 (99)
195 cd03069 PDI_b_ERp57 PDIb famil 93.6 0.78 1.7E-05 38.8 9.9 97 52-173 7-103 (104)
196 cd03418 GRX_GRXb_1_3_like Glut 93.5 0.1 2.2E-06 41.0 4.0 53 69-134 2-57 (75)
197 TIGR02194 GlrX_NrdH Glutaredox 93.4 0.19 4.2E-06 39.3 5.3 52 70-134 2-54 (72)
198 KOG2640 Thioredoxin [Function 93.2 0.056 1.2E-06 54.1 2.5 99 59-180 70-168 (319)
199 cd03029 GRX_hybridPRX5 Glutare 93.1 0.29 6.2E-06 38.2 6.0 53 69-134 3-56 (72)
200 cd03027 GRX_DEP Glutaredoxin ( 92.7 0.17 3.6E-06 39.8 4.1 53 69-134 3-57 (73)
201 cd03066 PDI_b_Calsequestrin_mi 92.0 2.4 5.2E-05 35.6 10.6 95 49-173 3-100 (102)
202 COG1225 Bcp Peroxiredoxin [Pos 91.7 1.1 2.4E-05 41.0 8.7 63 60-128 25-107 (157)
203 cd03013 PRX5_like Peroxiredoxi 91.0 0.47 1E-05 43.3 5.7 59 66-130 30-93 (155)
204 PF00837 T4_deiodinase: Iodoth 90.9 0.95 2.1E-05 44.1 7.8 54 43-96 79-133 (237)
205 cd03028 GRX_PICOT_like Glutare 90.6 0.41 9E-06 39.4 4.5 47 75-134 21-69 (90)
206 TIGR00365 monothiol glutaredox 90.0 0.57 1.2E-05 39.2 4.9 47 75-134 25-73 (97)
207 COG1651 DsbG Protein-disulfide 90.0 4.3 9.3E-05 39.6 11.9 47 48-94 67-113 (244)
208 PRK10638 glutaredoxin 3; Provi 89.9 0.48 1E-05 38.2 4.2 53 69-134 4-58 (83)
209 KOG3170 Conserved phosducin-li 89.8 1.8 4E-05 40.8 8.3 108 45-172 90-199 (240)
210 PF13743 Thioredoxin_5: Thiore 89.8 1.2 2.6E-05 41.6 7.4 25 71-95 2-26 (176)
211 TIGR03143 AhpF_homolog putativ 89.4 2.2 4.7E-05 47.3 10.3 97 56-174 357-454 (555)
212 PRK10824 glutaredoxin-4; Provi 89.0 1.1 2.3E-05 39.0 5.9 31 56-90 8-43 (115)
213 COG0695 GrxC Glutaredoxin and 88.8 1.2 2.6E-05 35.9 5.7 53 69-134 3-59 (80)
214 PRK10954 periplasmic protein d 88.4 0.49 1.1E-05 45.3 3.8 30 66-95 38-70 (207)
215 KOG1752 Glutaredoxin and relat 88.4 1.5 3.3E-05 37.3 6.3 70 55-142 6-79 (104)
216 KOG2792 Putative cytochrome C 86.8 11 0.00024 37.2 11.8 49 63-112 137-186 (280)
217 cd03068 PDI_b_ERp72 PDIb famil 85.5 6.9 0.00015 33.3 8.9 99 52-173 7-107 (107)
218 COG3019 Predicted metal-bindin 83.2 6.6 0.00014 35.0 7.8 74 68-174 27-104 (149)
219 PRK12759 bifunctional gluaredo 81.8 2.6 5.6E-05 44.9 5.8 53 69-134 4-66 (410)
220 COG1331 Highly conserved prote 74.2 9.5 0.00021 42.6 7.4 79 50-139 30-120 (667)
221 PTZ00062 glutaredoxin; Provisi 72.3 7.3 0.00016 37.3 5.4 47 75-134 126-174 (204)
222 PF02630 SCO1-SenC: SCO1/SenC; 71.9 8.8 0.00019 35.6 5.7 71 48-124 37-109 (174)
223 PF09673 TrbC_Ftype: Type-F co 67.1 33 0.00071 29.5 7.8 45 82-137 36-80 (113)
224 PF02439 Adeno_E3_CR2: Adenovi 64.9 6.8 0.00015 26.8 2.4 27 479-505 8-36 (38)
225 cd02990 UAS_FAF1 UAS family, F 64.5 85 0.0018 28.1 10.1 94 65-174 21-133 (136)
226 PF03918 CcmH: Cytochrome C bi 64.1 5.2 0.00011 36.3 2.4 17 429-445 74-90 (148)
227 COG1999 Uncharacterized protei 63.2 76 0.0016 30.4 10.3 67 64-133 66-135 (207)
228 PRK10144 formate-dependent nit 62.4 17 0.00036 32.1 5.1 17 429-445 74-90 (126)
229 cd03060 GST_N_Omega_like GST_N 60.2 16 0.00035 28.0 4.3 53 70-134 2-54 (71)
230 COG0450 AhpC Peroxiredoxin [Po 58.7 44 0.00094 31.7 7.5 43 65-113 33-76 (194)
231 PF07172 GRP: Glycine rich pro 55.5 17 0.00038 30.3 3.9 18 1-18 1-18 (95)
232 cd03031 GRX_GRX_like Glutaredo 55.2 29 0.00064 31.4 5.6 53 69-134 2-66 (147)
233 TIGR03147 cyt_nit_nrfF cytochr 54.8 25 0.00053 31.0 4.8 17 429-445 74-90 (126)
234 cd03040 GST_N_mPGES2 GST_N fam 54.2 98 0.0021 23.8 8.0 76 69-175 2-77 (77)
235 TIGR02742 TrbC_Ftype type-F co 52.8 56 0.0012 29.0 6.8 78 82-173 37-114 (130)
236 PF09049 SNN_transmemb: Stanni 50.9 17 0.00036 23.4 2.3 28 465-497 3-30 (33)
237 cd02978 KaiB_like KaiB-like fa 50.7 59 0.0013 25.7 5.9 59 68-134 3-61 (72)
238 PF12172 DUF35_N: Rubredoxin-l 50.5 2.9 6.2E-05 28.3 -1.3 16 401-416 19-34 (37)
239 PF08114 PMP1_2: ATPase proteo 49.5 17 0.00036 25.3 2.3 22 485-507 17-38 (43)
240 cd03041 GST_N_2GST_N GST_N fam 48.0 49 0.0011 25.8 5.4 52 70-134 3-56 (77)
241 cd03051 GST_N_GTT2_like GST_N 44.6 37 0.0008 25.6 4.1 54 70-134 2-57 (74)
242 PHA03075 glutaredoxin-like pro 44.3 33 0.00072 29.7 3.9 30 66-95 2-31 (123)
243 PRK09301 circadian clock prote 43.1 78 0.0017 26.9 5.9 62 65-134 5-66 (103)
244 PF08693 SKG6: Transmembrane a 42.6 12 0.00026 26.0 0.8 14 473-486 15-28 (40)
245 TIGR02654 circ_KaiB circadian 42.6 84 0.0018 25.8 5.9 61 66-134 3-63 (87)
246 cd00570 GST_N_family Glutathio 42.3 37 0.0008 24.7 3.7 53 71-134 3-55 (71)
247 PF01323 DSBA: DSBA-like thior 40.8 41 0.00088 31.0 4.5 38 116-170 155-192 (193)
248 PF12768 Rax2: Cortical protei 40.7 32 0.0007 34.7 3.9 41 471-511 224-264 (281)
249 cd03024 DsbA_FrnE DsbA family, 39.0 32 0.0007 32.0 3.5 38 116-170 163-200 (201)
250 PF00255 GSHPx: Glutathione pe 39.0 62 0.0013 27.7 4.8 57 49-114 7-63 (108)
251 COG2761 FrnE Predicted dithiol 38.0 46 0.001 32.3 4.3 42 118-176 174-215 (225)
252 KOG2507 Ubiquitin regulatory p 37.5 1.7E+02 0.0038 31.1 8.5 98 55-172 7-109 (506)
253 cd02977 ArsC_family Arsenate R 35.2 33 0.00072 28.7 2.6 20 70-89 2-21 (105)
254 PF15330 SIT: SHP2-interacting 34.8 60 0.0013 27.7 4.1 29 481-509 5-33 (107)
255 PF15099 PIRT: Phosphoinositid 34.8 20 0.00043 31.4 1.1 28 483-510 83-113 (129)
256 PF04592 SelP_N: Selenoprotein 34.4 75 0.0016 31.1 5.1 51 59-112 20-70 (238)
257 PF01216 Calsequestrin: Calseq 33.8 2.8E+02 0.0061 28.9 9.2 103 46-176 146-249 (383)
258 PF13417 GST_N_3: Glutathione 33.7 1.5E+02 0.0032 22.8 6.0 71 72-175 2-72 (75)
259 COG0295 Cdd Cytidine deaminase 33.3 55 0.0012 29.2 3.7 12 77-88 88-99 (134)
260 PF14316 DUF4381: Domain of un 32.8 35 0.00075 30.7 2.5 26 485-510 27-52 (146)
261 cd03035 ArsC_Yffb Arsenate Red 32.0 40 0.00088 28.5 2.6 20 70-89 2-21 (105)
262 PF15284 PAGK: Phage-encoded v 31.8 61 0.0013 24.6 3.1 30 479-509 7-36 (61)
263 cd03045 GST_N_Delta_Epsilon GS 31.5 59 0.0013 24.7 3.3 54 70-134 2-57 (74)
264 PF06522 B12D: NADH-ubiquinone 31.2 43 0.00093 26.5 2.4 21 475-495 5-25 (73)
265 cd03059 GST_N_SspA GST_N famil 29.8 65 0.0014 24.3 3.3 52 70-133 2-53 (73)
266 PF04805 Pox_E10: E10-like pro 29.8 37 0.00081 26.3 1.7 36 345-380 14-53 (70)
267 PF11980 DUF3481: Domain of un 29.1 55 0.0012 26.6 2.7 24 480-503 22-45 (87)
268 cd03022 DsbA_HCCA_Iso DsbA fam 27.5 76 0.0016 29.1 3.9 18 117-134 156-173 (192)
269 PF14986 DUF4514: Domain of un 27.0 73 0.0016 23.5 2.7 22 477-499 23-44 (61)
270 COG3531 Predicted protein-disu 25.9 97 0.0021 29.5 4.1 44 118-174 164-209 (212)
271 smart00575 ZnF_PMZ plant mutat 25.4 38 0.00081 21.4 0.9 15 306-325 7-21 (28)
272 cd03037 GST_N_GRX2 GST_N famil 24.7 1.7E+02 0.0037 22.0 4.9 19 71-89 3-21 (71)
273 PF06053 DUF929: Domain of unk 24.7 54 0.0012 32.4 2.4 28 63-90 56-84 (249)
274 cd03036 ArsC_like Arsenate Red 23.9 69 0.0015 27.2 2.7 20 70-89 2-21 (111)
275 PRK10081 entericidin B membran 23.7 97 0.0021 22.5 2.8 19 1-19 1-19 (48)
276 COG3634 AhpF Alkyl hydroperoxi 23.6 2.9E+02 0.0063 29.0 7.3 84 61-171 112-195 (520)
277 PRK01655 spxA transcriptional 23.0 85 0.0018 27.6 3.1 21 69-89 2-22 (131)
278 PRK10561 glycerol-3-phosphate 22.1 1E+02 0.0022 30.5 3.9 32 477-508 248-279 (280)
279 COG3088 CcmH Uncharacterized p 21.7 1.9E+02 0.0041 26.3 4.9 16 430-445 79-94 (153)
280 PF05214 Baculo_p33: Baculovir 21.3 72 0.0016 31.3 2.4 43 316-358 108-163 (250)
281 PF01323 DSBA: DSBA-like thior 21.2 1.2E+02 0.0027 27.6 4.1 38 69-112 2-39 (193)
282 PF07010 Endomucin: Endomucin; 20.8 1.2E+02 0.0026 29.4 3.7 35 465-500 179-213 (259)
283 PF04134 DUF393: Protein of un 20.5 1E+02 0.0022 25.9 3.1 45 72-127 2-46 (114)
284 PF15643 Tox-PL-2: Papain fold 20.4 1.1E+02 0.0025 25.7 3.1 30 333-362 3-34 (100)
No 1
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=5.7e-96 Score=755.08 Aligned_cols=443 Identities=37% Similarity=0.657 Sum_probs=336.3
Q ss_pred cccCcceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHH
Q 010286 43 VEVDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCD 122 (513)
Q Consensus 43 ~~~~~v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~ 122 (513)
.+.|+|+.|+.++|+.+|.+++ +..||+||++|||||++|+|+|+++|+++.+|. +.|.+++|||++++|..+|+
T Consensus 36 ~~~D~ii~Ld~~tf~~~v~~~~-~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~----~vv~vaaVdCA~~~N~~lCR 110 (606)
T KOG1731|consen 36 SPDDPIIELDVDTFNAAVFGSR-KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWR----PVVRVAAVDCADEENVKLCR 110 (606)
T ss_pred CCCCCeEEeehhhhHHHhcccc-hhHHHHHHHhhhhhhhhcchHHHHHHHHHhccc----ceeEEEEeeccchhhhhhHh
Confidence 4558999999999999999886 446999999999999999999999999999876 78999999999999999999
Q ss_pred HCCCCccceEEEecCCc-------ccCC-------------------------CCC---Cccccchhhh-ccCcCCH---
Q 010286 123 KFSVGHYPMLLWGSPSK-------FVAG-------------------------SWE---PNQEKKEIRA-LEDWQTA--- 163 (513)
Q Consensus 123 ~f~I~~~PTl~~f~~g~-------~~~~-------------------------~~~---~~~~~~~v~~-~~g~~~~--- 163 (513)
+|+|++|||++||+++- ...+ .|+ |..+...+.. ++|..+.
T Consensus 111 ef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~y 190 (606)
T KOG1731|consen 111 EFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANY 190 (606)
T ss_pred hcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccce
Confidence 99999999999998751 1111 111 1111111111 1111110
Q ss_pred --------HHHHHH---HHHh----ccccCCCCccccccc----------cCCCCC------------------------
Q 010286 164 --------DGLLTW---INKQ----TSRSYGLDDEKFENE----------QLPSNI------------------------ 194 (513)
Q Consensus 164 --------e~L~~~---i~~~----l~~~~~l~~~~~~~~----------~~~~~~------------------------ 194 (513)
+..+.| |+-. .+..+.++++.+... .+-++.
T Consensus 191 vAiv~e~~~s~lg~~~~l~~l~~~~v~vr~~~d~q~~~~~~l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg 270 (606)
T KOG1731|consen 191 VAIVFETEPSDLGWANLLNDLPSKQVGVRARLDTQNFPLFGLKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLG 270 (606)
T ss_pred eEEEEecCCcccHHHHHHhhccCCCcceEEEecchhccccccCCCCchhhhhhcCCcccccccccccHHHHHHHHHHHhc
Confidence 001111 1111 111111111111000 000000
Q ss_pred ------------CC---ccchhH----------hH--hHhhhhhhHHHHHHH-hhhccchhhHHHHHHHHHHHHHhcCCc
Q 010286 195 ------------SD---PGQIAR----------AV--YDVEEATTTAFDIIL-DHKMIKSETRASLIRFLQVLVAHHPSR 246 (513)
Q Consensus 195 ------------~~---~~~~~~----------~~--~Dle~a~~~a~~~il-~~~~l~ge~l~al~~Fl~vl~~~~P~~ 246 (513)
.. ....+. .| .|+|+|+.++++..+ ....|+|+++.||++|++++++++|+.
T Consensus 271 ~~~~a~~pt~~p~~~~~~~~~Id~~~~~l~~~~~V~~aDLeqAm~~~L~~Ev~R~~~i~g~~l~aLk~f~~ll~r~~P~~ 350 (606)
T KOG1731|consen 271 DKNEASGPTLHPITATTAAPTIDAPSEVLNNQYFVYEADLEQAMSYILHIEVPRTALIRGENLAALKEFMHLLRRYFPGT 350 (606)
T ss_pred CccccCCCCcCcccccccchhhhcchhhcCccceehHhhHHHHHHHHHHHhhcchhhccCchHHHHHHHHHHHHHhCCCC
Confidence 00 000000 12 389999888888654 557899999999999999999999996
Q ss_pred cccchhHHHHHhhhhcCCCCccchhhHHHhhccCCCCCCCcCccCCCCC-CCCcccccCCCCCcCcccccHHHHHHHHhh
Q 010286 247 RCRKGSAKVLVNFDDFSPSHMQSADKQEVVNNNGKGGLGNFPICGKEVP-RGYWIFCRGSKNDTRGFSCGLWVLLHSLSV 325 (513)
Q Consensus 247 ~~r~~~~~lL~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~g~~~p-~~~w~~C~gS~~~~Rgy~CglW~l~H~ltv 325 (513)
. ....++..+++ |......... ..+.+.+...+.+|.++| +.+|+||+||+|++||||||||||||+|||
T Consensus 351 ~---~~~~l~~~Ld~-~~~~~~~it~-----~~f~d~~~~~~~~g~p~p~~~~w~gC~GS~P~~RGftCgLWTLFH~lTV 421 (606)
T KOG1731|consen 351 A---DGRRLVNSLDN-SLSARQVITG-----EWFRDVLDDLEACGSPFPKEGTWVGCAGSKPHLRGFTCGLWTLFHALTV 421 (606)
T ss_pred h---hHHHHHHHHhh-hhhhceeecH-----HHHHHHHHHHHHhCCCccccceeEeecCCCCccCCcchHHHHHHHHhhh
Confidence 4 33345555544 3322211111 123445567788999999 459999999999999999999999999999
Q ss_pred cCCCCCC----HHHHHHHHHHhHhccCChHHHHHHHHHhcC----CCCChhHHHHHHHHhhhhhhhhhcccccccCCCCC
Q 010286 326 RIDDGES----QFTFTAVCDFIHNFFVCEECRQHFYQMCSS----PFNKTRDFALWLWSTHNQVNERLMKLEASLKTGDP 397 (513)
Q Consensus 326 ~~~~~~~----~~~~~~~~~~v~~ff~C~~C~~hf~~~~~~----~~~~~~~~~lWlw~~HN~VN~rl~~~~~~~~~~dp 397 (513)
++.+++. ..++..+.+||++||+|.+||+||++|+.+ .|.+++|++||||++||+||+||+|+ .||||
T Consensus 422 ~Aa~~~~~~~~~~~l~~l~~~vk~FFgC~dC~~HF~~Ma~~~~~~~V~~ped~vLWLW~aHN~VN~RLaGd----~TeDP 497 (606)
T KOG1731|consen 422 EAAKQEVHFAFTPILDVLHGFVKNFFGCTDCREHFQKMATRRKLHRVRRPEDVVLWLWSAHNEVNARLAGD----STEDP 497 (606)
T ss_pred hhcccccccchhccchhhHHHHHHccCchHHHHHHHHHHHhhcccccCChhhhhhHHHHHhhHHHHHhccC----CCCCC
Confidence 9977543 346778888999999999999999999988 68899999999999999999999997 89999
Q ss_pred CCCCCCCCCCCCChhhhccCCCCCCcccCCCCChHHHHHHHHHHhCCCcccccccccccc-CCCccccccccccccccee
Q 010286 398 KFPKIIWPPKQLCSSCYRSHHHGDMKFRQIDWDQDEVFKFLTNYYGNTLVSLYKDREFLR-NDGIDGALEDLVVSTNAVV 476 (513)
Q Consensus 398 ~fpk~~~P~~~~Cp~C~~~~~~~~~~~~~~~w~e~~V~~fL~~~Y~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 476 (513)
+|||+|||++++||+||..+ ++||+|+||+|||+|||...+|.|++.+... +++.....++....+|..+
T Consensus 498 kFPK~QFP~kelCp~Cy~~~---------~ewd~d~vl~FLk~yY~ik~~S~~~l~~~~~~~~~~~k~~~~~k~~~n~~~ 568 (606)
T KOG1731|consen 498 KFPKVQFPPKELCPDCYSSS---------IEWDEDEVLKFLKKYYSIKPVSRYALPGESRSKEEEGKKLEAQKRPTNAFV 568 (606)
T ss_pred CCCcccCCChhhChhhhcCC---------CCcCHHHHHHHHHHHcCCCcccccccccccccccccccchhhhccCccccc
Confidence 99999999999999999874 4799999999999999999999999999874 4444445777788999999
Q ss_pred eeHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCCCC
Q 010286 477 VPVGAALAIALASCAFGALACYWRSQQKNRKPRRSW 512 (513)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (513)
||.|++.+|+.|+|+||+||||||+|||+|||.++.
T Consensus 569 v~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 604 (606)
T KOG1731|consen 569 VPAGAALALAAASCAFGALACYQRTQKKNRKYQYNP 604 (606)
T ss_pred ccccchhhhhhhhhhhhhccccccChhhhhcccCCC
Confidence 999999999999999999999999999999998864
No 2
>PF04777 Evr1_Alr: Erv1 / Alr family; InterPro: IPR006863 Biogenesis of Fe/S clusters involves a number of essential mitochondrial proteins. Erv1p of Saccharomyces cerevisiae (Baker's yeast) mitochondria is required for the maturation of Fe/S proteins in the cytosol. The ALR (augmenter of liver regeneration) represents a mammalian ortholog of yeast Erv1p. Both Erv1p and full-length ALR are located in the mitochondrial intermembrane and it is thought to operate downstream of the mitochondrial ABC transporter [].; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process; PDB: 3MBG_C 3U2L_A 3U2M_A 3QD9_D 3QCP_A 3O55_A 2HJ3_B 3GWN_A 3T58_D 3T59_B ....
Probab=99.95 E-value=8.2e-29 Score=208.28 Aligned_cols=88 Identities=43% Similarity=0.873 Sum_probs=81.6
Q ss_pred ccHHHHHHHHhhcCCCCCC---HHHHHHHHHHhHhccCChHHHHHHHHHhcC---CCCChhHHHHHHHHhhhhhhhhhcc
Q 010286 314 CGLWVLLHSLSVRIDDGES---QFTFTAVCDFIHNFFVCEECRQHFYQMCSS---PFNKTRDFALWLWSTHNQVNERLMK 387 (513)
Q Consensus 314 CglW~l~H~ltv~~~~~~~---~~~~~~~~~~v~~ff~C~~C~~hf~~~~~~---~~~~~~~~~lWlw~~HN~VN~rl~~ 387 (513)
||+|+|||++|+++|+.|+ +.++.+|.+++.+||||++||+||.+++++ .++|++++++|||++||.||+||+|
T Consensus 1 c~~W~llH~~a~~~p~~p~~~~~~~~~~~~~~~~~~~pC~~C~~hf~~~~~~~~~~v~sr~~l~~Wl~~~HN~VN~rL~k 80 (95)
T PF04777_consen 1 CGLWTLLHTLAAYYPENPTEEEKQVMEAFFRSFPHFFPCEECRNHFSKYIKKNPPQVSSREDLVLWLWRAHNKVNERLGK 80 (95)
T ss_dssp HHHHHHHHHHHHTSHSSHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHSGGGGSSHHHHHHHHHHHHHHHHHHTTT
T ss_pred CchHHHHHHHHhcCccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999877 567889999999999999999999999987 6899999999999999999999999
Q ss_pred cccccC-CCCCCCCCCCCCC
Q 010286 388 LEASLK-TGDPKFPKIIWPP 406 (513)
Q Consensus 388 ~~~~~~-~~dp~fpk~~~P~ 406 (513)
+ . ++||+| |.||||
T Consensus 81 ~----~~~~~~~~-~~~~~~ 95 (95)
T PF04777_consen 81 P----IFCDDPKF-KEQWPT 95 (95)
T ss_dssp S----TTTSGTTH-HHHHT-
T ss_pred C----CCCCcHHH-HhHcCC
Confidence 7 4 689999 999996
No 3
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.84 E-value=1.6e-20 Score=162.69 Aligned_cols=105 Identities=14% Similarity=0.260 Sum_probs=88.8
Q ss_pred ccCcceecCcccHHHHHh-cCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHH-
Q 010286 44 EVDHAVELNATNFDAVLR-DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLC- 121 (513)
Q Consensus 44 ~~~~v~~L~~~~f~~~l~-~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc- 121 (513)
....|++|++++|++.+. ...++++||+||||||+||+.++|.|+++|+.++ +.+.|++|||+ ++.++|
T Consensus 7 ~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~-------~~v~~~~Vd~d--~~~~l~~ 77 (113)
T cd03006 7 QRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLS-------DQVLFVAINCW--WPQGKCR 77 (113)
T ss_pred CCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc-------CCeEEEEEECC--CChHHHH
Confidence 456799999999999732 2235889999999999999999999999999986 35899999995 578899
Q ss_pred HHCCCCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHH
Q 010286 122 DKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (513)
Q Consensus 122 ~~f~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i 170 (513)
++|+|++|||+++|++|+ ....|.|.++.+.|+.|+
T Consensus 78 ~~~~I~~~PTl~lf~~g~-------------~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 78 KQKHFFYFPVIHLYYRSR-------------GPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred HhcCCcccCEEEEEECCc-------------cceEEeCCCCHHHHHhhC
Confidence 589999999999998763 235688999999998873
No 4
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.82 E-value=9.5e-20 Score=154.63 Aligned_cols=99 Identities=22% Similarity=0.455 Sum_probs=87.3
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCC
Q 010286 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (513)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I 126 (513)
.+++|+.++|++.+.+. ++++|.|||+||++|+++.|.|+++|+.++ +.+.|++|||+ +++++|++|+|
T Consensus 2 ~~~~l~~~~f~~~v~~~--~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~-------~~~~~~~vd~~--~~~~~~~~~~v 70 (101)
T cd03003 2 EIVTLDRGDFDAAVNSG--EIWFVNFYSPRCSHCHDLAPTWREFAKEMD-------GVIRIGAVNCG--DDRMLCRSQGV 70 (101)
T ss_pred CeEEcCHhhHHHHhcCC--CeEEEEEECCCChHHHHhHHHHHHHHHHhc-------CceEEEEEeCC--ccHHHHHHcCC
Confidence 57899999999999653 789999999999999999999999999986 45899999995 57899999999
Q ss_pred CccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHH
Q 010286 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTW 169 (513)
Q Consensus 127 ~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~ 169 (513)
++|||+++|++|+. +..|.|.++.++|.+|
T Consensus 71 ~~~Pt~~~~~~g~~-------------~~~~~G~~~~~~l~~f 100 (101)
T cd03003 71 NSYPSLYVFPSGMN-------------PEKYYGDRSKESLVKF 100 (101)
T ss_pred CccCEEEEEcCCCC-------------cccCCCCCCHHHHHhh
Confidence 99999999988732 3568899999998876
No 5
>KOG3355 consensus Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.5e-20 Score=164.28 Aligned_cols=73 Identities=32% Similarity=0.611 Sum_probs=67.5
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHHHHhHh---ccCChHHHHHHHHHhcC---CCCChhHHHHHHHHhhhhhhhhhcc
Q 010286 315 GLWVLLHSLSVRIDDGESQFTFTAVCDFIHN---FFVCEECRQHFYQMCSS---PFNKTRDFALWLWSTHNQVNERLMK 387 (513)
Q Consensus 315 glW~l~H~ltv~~~~~~~~~~~~~~~~~v~~---ff~C~~C~~hf~~~~~~---~~~~~~~~~lWlw~~HN~VN~rl~~ 387 (513)
+.|+|||+|+++||+.|+.+....|+.|+.. ||||.+|++||++.+.+ ++.||+++.+|||.+||.||++|+|
T Consensus 76 stWtllHT~aA~yP~~PT~eqk~~~~sFi~~~s~~yPC~eCa~dl~K~l~~nppq~~SRe~~~~W~C~vHN~VNekLgK 154 (177)
T KOG3355|consen 76 STWTLLHTLAANYPDRPTPEQKDDMRSFIHLFSKFYPCGECAKDLRKILRKNPPQTSSREAFTQWLCHVHNKVNEKLGK 154 (177)
T ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHcCC
Confidence 4699999999999999998877777887775 69999999999999988 7999999999999999999999999
No 6
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=9.8e-20 Score=190.76 Aligned_cols=114 Identities=25% Similarity=0.552 Sum_probs=101.8
Q ss_pred ccCcceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHH
Q 010286 44 EVDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDK 123 (513)
Q Consensus 44 ~~~~v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~ 123 (513)
....|..|+.+||+..|.++ ..+||+|||||||||++++|+|++.|..+++.+ ..+.+++|||+ ++.++|.+
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~~~--~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~----s~i~LakVDat--~~~~~~~~ 94 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETINGH--EFVLVEFYAPWCGHCKALAPEYEKAATELKEEG----SPVKLAKVDAT--EESDLASK 94 (493)
T ss_pred cccceEEEecccHHHHhccC--ceEEEEEEchhhhhhhhhCcHHHHHHHHhhccC----CCceeEEeecc--hhhhhHhh
Confidence 45679999999999999985 778999999999999999999999999998754 46999999996 45999999
Q ss_pred CCCCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhccccC
Q 010286 124 FSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSY 178 (513)
Q Consensus 124 f~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~~~~ 178 (513)
|+|++|||+++|++|+. ...|.|+|+++.|+.|+.++.++..
T Consensus 95 y~v~gyPTlkiFrnG~~-------------~~~Y~G~r~adgIv~wl~kq~gPa~ 136 (493)
T KOG0190|consen 95 YEVRGYPTLKIFRNGRS-------------AQDYNGPREADGIVKWLKKQSGPAS 136 (493)
T ss_pred hcCCCCCeEEEEecCCc-------------ceeccCcccHHHHHHHHHhccCCCc
Confidence 99999999999999843 2569999999999999999988654
No 7
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.80 E-value=3.9e-19 Score=151.53 Aligned_cols=102 Identities=25% Similarity=0.592 Sum_probs=87.9
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCC
Q 010286 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (513)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I 126 (513)
.++.++.++|++.+.++ +++++|.|||+||++|+++.|.|+++++.+. +.+.++.|||+ ++.++|++|+|
T Consensus 2 ~v~~l~~~~f~~~i~~~-~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~-------~~~~~~~vd~~--~~~~~~~~~~i 71 (104)
T cd03004 2 SVITLTPEDFPELVLNR-KEPWLVDFYAPWCGPCQALLPELRKAARALK-------GKVKVGSVDCQ--KYESLCQQANI 71 (104)
T ss_pred cceEcCHHHHHHHHhcC-CCeEEEEEECCCCHHHHHHHHHHHHHHHHhc-------CCcEEEEEECC--chHHHHHHcCC
Confidence 47789999999998875 4689999999999999999999999999985 45899999995 57899999999
Q ss_pred CccceEEEecCCcccCCCCCCccccchhhhccCcCC-HHHHHHHH
Q 010286 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQT-ADGLLTWI 170 (513)
Q Consensus 127 ~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~-~e~L~~~i 170 (513)
+++||+++|++|. ..+..|.|..+ .++|.+||
T Consensus 72 ~~~Pt~~~~~~g~------------~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 72 RAYPTIRLYPGNA------------SKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CcccEEEEEcCCC------------CCceEccCCCCCHHHHHhhC
Confidence 9999999998761 22356888886 99998875
No 8
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.79 E-value=6.2e-19 Score=149.02 Aligned_cols=103 Identities=30% Similarity=0.695 Sum_probs=92.5
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCC
Q 010286 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG 127 (513)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~ 127 (513)
|+.+++++|++.+.++ ++++||.||++||++|+.+.|.|+++++.+.+ .+.++.|||+ ++.++|++|+|+
T Consensus 1 v~~lt~~~f~~~i~~~-~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-------~v~~~~vd~~--~~~~l~~~~~v~ 70 (103)
T PF00085_consen 1 VIVLTDENFEKFINES-DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-------NVKFAKVDCD--ENKELCKKYGVK 70 (103)
T ss_dssp SEEESTTTHHHHHTTT-SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-------TSEEEEEETT--TSHHHHHHTTCS
T ss_pred CEECCHHHHHHHHHcc-CCCEEEEEeCCCCCccccccceeccccccccc-------ccccchhhhh--ccchhhhccCCC
Confidence 5789999999999983 48899999999999999999999999999873 5999999994 689999999999
Q ss_pred ccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHh
Q 010286 128 HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (513)
Q Consensus 128 ~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~ 173 (513)
++||+++|.+|+ ....+.|.++.+.|.+||+++
T Consensus 71 ~~Pt~~~~~~g~-------------~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 71 SVPTIIFFKNGK-------------EVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp SSSEEEEEETTE-------------EEEEEESSSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCc-------------EEEEEECCCCHHHHHHHHHcC
Confidence 999999999884 334789999999999999875
No 9
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.79 E-value=7.3e-19 Score=150.87 Aligned_cols=107 Identities=32% Similarity=0.659 Sum_probs=91.8
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCC
Q 010286 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG 127 (513)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~ 127 (513)
|++|++++|++.+.+. ++++||.|||+||++|+++.|.|+++++.+. +.+.++.|||+.+.+.++|++|+|+
T Consensus 2 v~~l~~~~~~~~i~~~-~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~-------~~~~~~~v~~~~~~~~~~~~~~~i~ 73 (109)
T cd03002 2 VYELTPKNFDKVVHNT-NYTTLVEFYAPWCGHCKNLKPEYAKAAKELD-------GLVQVAAVDCDEDKNKPLCGKYGVQ 73 (109)
T ss_pred eEEcchhhHHHHHhcC-CCeEEEEEECCCCHHHHhhChHHHHHHHHhc-------CCceEEEEecCccccHHHHHHcCCC
Confidence 6789999999999875 5779999999999999999999999999986 3588999999766689999999999
Q ss_pred ccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHH
Q 010286 128 HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (513)
Q Consensus 128 ~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i 170 (513)
++||+++|++|+.... .....|.|.++.++|.+||
T Consensus 74 ~~Pt~~~~~~~~~~~~--------~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 74 GFPTLKVFRPPKKASK--------HAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred cCCEEEEEeCCCcccc--------cccccccCccCHHHHHHHh
Confidence 9999999988742110 2235689999999999997
No 10
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.79 E-value=6.7e-19 Score=151.33 Aligned_cols=107 Identities=22% Similarity=0.521 Sum_probs=89.2
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCC
Q 010286 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (513)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I 126 (513)
.|+++++++|++.+.. ++++||.||||||++|+++.|.|+++++.+++... ..+.+.++.|||+ ++.++|++|+|
T Consensus 2 ~v~~l~~~~f~~~i~~--~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~-~~~~~~~~~vd~d--~~~~l~~~~~v 76 (108)
T cd02996 2 EIVSLTSGNIDDILQS--AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFP-DAGKVVWGKVDCD--KESDIADRYRI 76 (108)
T ss_pred ceEEcCHhhHHHHHhc--CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccC-CCCcEEEEEEECC--CCHHHHHhCCC
Confidence 5789999999998855 47899999999999999999999999998853211 0135999999995 57899999999
Q ss_pred CccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHH
Q 010286 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (513)
Q Consensus 127 ~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i 170 (513)
+++||+++|++|+.. ...+.|.++.++|.+||
T Consensus 77 ~~~Ptl~~~~~g~~~------------~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 77 NKYPTLKLFRNGMMM------------KREYRGQRSVEALAEFV 108 (108)
T ss_pred CcCCEEEEEeCCcCc------------ceecCCCCCHHHHHhhC
Confidence 999999999987421 24678999999999885
No 11
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.78 E-value=1.5e-18 Score=167.46 Aligned_cols=110 Identities=24% Similarity=0.471 Sum_probs=94.3
Q ss_pred cCcceecCcccHHHHHhcC---CCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHH
Q 010286 45 VDHAVELNATNFDAVLRDT---PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLC 121 (513)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~---~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc 121 (513)
.+.+++|++++|++.+..+ .+++++|+||||||+||++++|.|++++++++ +.+.++.|||+ ++.++|
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~-------~~v~~~~VD~~--~~~~l~ 99 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALK-------GQVNVADLDAT--RALNLA 99 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcC-------CCeEEEEecCc--ccHHHH
Confidence 4569999999999988654 24689999999999999999999999999986 35899999995 578999
Q ss_pred HHCCCCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhccc
Q 010286 122 DKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (513)
Q Consensus 122 ~~f~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~~ 176 (513)
++|+|++|||+++|++|+. +..+.|.++.++|.+|+.+....
T Consensus 100 ~~~~I~~~PTl~~f~~G~~-------------v~~~~G~~s~e~L~~fi~~~~~~ 141 (224)
T PTZ00443 100 KRFAIKGYPTLLLFDKGKM-------------YQYEGGDRSTEKLAAFALGDFKK 141 (224)
T ss_pred HHcCCCcCCEEEEEECCEE-------------EEeeCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998743 23456789999999999988753
No 12
>COG5054 ERV1 Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=4.2e-19 Score=157.26 Aligned_cols=73 Identities=25% Similarity=0.505 Sum_probs=66.8
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHHHHhHh---ccCChHHHHHHHHHhcC---CCCChhHHHHHHHHhhhhhhhhhcc
Q 010286 315 GLWVLLHSLSVRIDDGESQFTFTAVCDFIHN---FFVCEECRQHFYQMCSS---PFNKTRDFALWLWSTHNQVNERLMK 387 (513)
Q Consensus 315 glW~l~H~ltv~~~~~~~~~~~~~~~~~v~~---ff~C~~C~~hf~~~~~~---~~~~~~~~~lWlw~~HN~VN~rl~~ 387 (513)
+.|+|||+|+++||+.|+......++.|+.. +|||.+|++||++.+.. +|+||+++..|+|++||.||+||++
T Consensus 85 ssWtllHtv~A~yP~~PT~~qr~~l~sFl~~~s~~yPCgeCs~~f~K~l~~~ppqv~SRea~~~W~CevHN~VNekL~K 163 (181)
T COG5054 85 SSWTLLHTVAANYPARPTPQQRDDLRSFLFLFSITYPCGECSKHFQKLLDVYPPQVSSREAATTWACEVHNKVNEKLGK 163 (181)
T ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhheeecHHHHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHHHhCC
Confidence 3699999999999999997777777777765 59999999999999988 7999999999999999999999999
No 13
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=8.6e-19 Score=155.45 Aligned_cols=106 Identities=18% Similarity=0.353 Sum_probs=94.7
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCC
Q 010286 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (513)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I 126 (513)
.+..++..+|++.+.++ +.||||+|||+|||||+.+.|.+++++.+|. +.+.+++||. |++.+++.+|+|
T Consensus 44 ~~~~~s~~~~~~~Vi~S-~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~-------g~~k~~kvdt--D~~~ela~~Y~I 113 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINS-DVPVLVDFHAEWCGPCKMLGPILEELVSEYA-------GKFKLYKVDT--DEHPELAEDYEI 113 (150)
T ss_pred cccccCHHHHHHHHHcc-CCCEEEEEecCcCccHhHhhHHHHHHHHhhc-------CeEEEEEEcc--ccccchHhhcce
Confidence 45677889999999887 4899999999999999999999999999996 6799999996 678999999999
Q ss_pred CccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhcc
Q 010286 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (513)
Q Consensus 127 ~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~ 175 (513)
.++||+++|++|+ ....+.|..+.+.|.++|++.++
T Consensus 114 ~avPtvlvfknGe-------------~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 114 SAVPTVLVFKNGE-------------KVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred eeeeEEEEEECCE-------------EeeeecccCCHHHHHHHHHHHhc
Confidence 9999999999984 34567899999999999998764
No 14
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.77 E-value=1.6e-18 Score=149.64 Aligned_cols=103 Identities=18% Similarity=0.314 Sum_probs=84.8
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEec--CCCH---HHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc---hhcH
Q 010286 47 HAVELNATNFDAVLRDTPATYAVVEFFA--NWCP---ACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL---KINT 118 (513)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vLV~FyA--~WCg---~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~---d~n~ 118 (513)
.++.|++.||+++|.+. +.+||+||| |||+ ||++++|+|.+.+. .|.++.|||++ .++.
T Consensus 2 g~v~L~~~nF~~~v~~~--~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-----------~v~lakVd~~d~~~~~~~ 68 (116)
T cd03007 2 GCVDLDTVTFYKVIPKF--KYSLVKFDTAYPYGEKHEAFTRLAESSASATD-----------DLLVAEVGIKDYGEKLNM 68 (116)
T ss_pred CeeECChhhHHHHHhcC--CcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-----------ceEEEEEecccccchhhH
Confidence 37899999999999875 679999999 9999 77777777766543 27899999953 3578
Q ss_pred HHHHHCCCC--ccceEEEecCCcccCCCCCCccccchhhhccCc-CCHHHHHHHHHHh
Q 010286 119 NLCDKFSVG--HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW-QTADGLLTWINKQ 173 (513)
Q Consensus 119 ~lc~~f~I~--~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~-~~~e~L~~~i~~~ 173 (513)
+||++|+|+ +||||++|++|.. .....|.|. |+.++|++||+++
T Consensus 69 ~L~~~y~I~~~gyPTl~lF~~g~~-----------~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 69 ELGERYKLDKESYPVIYLFHGGDF-----------ENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred HHHHHhCCCcCCCCEEEEEeCCCc-----------CCCccCCCCcccHHHHHHHHHhc
Confidence 999999999 9999999998732 122568997 9999999999875
No 15
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.76 E-value=3.4e-18 Score=144.88 Aligned_cols=100 Identities=28% Similarity=0.573 Sum_probs=85.8
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCC
Q 010286 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (513)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I 126 (513)
.|++|+.++|++.+.+ . +||+|||+||++|+.+.|.|+++++.++. ..+.++.|||+ ++..+|++|+|
T Consensus 2 ~v~~l~~~~f~~~~~~---~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~------~~v~~~~vd~~--~~~~~~~~~~i 69 (101)
T cd02994 2 NVVELTDSNWTLVLEG---E-WMIEFYAPWCPACQQLQPEWEEFADWSDD------LGINVAKVDVT--QEPGLSGRFFV 69 (101)
T ss_pred ceEEcChhhHHHHhCC---C-EEEEEECCCCHHHHHHhHHHHHHHHhhcc------CCeEEEEEEcc--CCHhHHHHcCC
Confidence 4789999999998743 3 68999999999999999999999998752 34899999995 57889999999
Q ss_pred CccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHH
Q 010286 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (513)
Q Consensus 127 ~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~ 172 (513)
+++||+++|++|+. ..+.|.++.++|.+||++
T Consensus 70 ~~~Pt~~~~~~g~~--------------~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 70 TALPTIYHAKDGVF--------------RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred cccCEEEEeCCCCE--------------EEecCCCCHHHHHHHHhC
Confidence 99999999987632 357899999999999864
No 16
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.76 E-value=3.4e-18 Score=149.28 Aligned_cols=108 Identities=14% Similarity=0.112 Sum_probs=91.8
Q ss_pred cCcceecCcccHHHHHhcCCCCeEEEEEecCCCHH--Hh--hhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHH
Q 010286 45 VDHAVELNATNFDAVLRDTPATYAVVEFFANWCPA--CR--NYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNL 120 (513)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~--Ck--~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~l 120 (513)
.+.|+.||++||++.+.++. .++||.|||+|||+ |+ .++|.+.++|.++-+. +.+.|++||++ +++++
T Consensus 8 ~~~v~~lt~~nF~~~v~~~~-~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~-----~~v~~~kVD~d--~~~~L 79 (120)
T cd03065 8 KDRVIDLNEKNYKQVLKKYD-VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED-----KGIGFGLVDSK--KDAKV 79 (120)
T ss_pred CcceeeCChhhHHHHHHhCC-ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc-----CCCEEEEEeCC--CCHHH
Confidence 45789999999999998874 68889999999976 99 8889999998887211 45999999984 68999
Q ss_pred HHHCCCCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhc
Q 010286 121 CDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (513)
Q Consensus 121 c~~f~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l 174 (513)
|++|+|+++||+++|++|+ .+. |.|.++.+.|.+||.+.+
T Consensus 80 a~~~~I~~iPTl~lfk~G~-------------~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 80 AKKLGLDEEDSIYVFKDDE-------------VIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred HHHcCCccccEEEEEECCE-------------EEE-eeCCCCHHHHHHHHHHHh
Confidence 9999999999999999884 234 889999999999998653
No 17
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.74 E-value=7.9e-18 Score=142.45 Aligned_cols=101 Identities=31% Similarity=0.661 Sum_probs=86.5
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCC
Q 010286 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG 127 (513)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~ 127 (513)
++.|++++|++.+.++ +++|.|||+||++|+.++|.|+++++.+++.. ..+.++.|||+ .+..+|++|+|+
T Consensus 2 ~~~l~~~~f~~~~~~~---~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~----~~~~~~~vd~~--~~~~~~~~~~v~ 72 (102)
T cd03005 2 VLELTEDNFDHHIAEG---NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNEN----PSVKIAKVDCT--QHRELCSEFQVR 72 (102)
T ss_pred eeECCHHHHHHHhhcC---CEEEEEECCCCHHHHHhCHHHHHHHHHHhccC----CcEEEEEEECC--CChhhHhhcCCC
Confidence 6789999999999763 48999999999999999999999999997422 35999999995 578999999999
Q ss_pred ccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHH
Q 010286 128 HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (513)
Q Consensus 128 ~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i 170 (513)
++||+++|++|+ .+..+.|.++.++|.+||
T Consensus 73 ~~Pt~~~~~~g~-------------~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 73 GYPTLLLFKDGE-------------KVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred cCCEEEEEeCCC-------------eeeEeeCCCCHHHHHhhC
Confidence 999999998873 235688999999988875
No 18
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.74 E-value=1.2e-17 Score=140.10 Aligned_cols=96 Identities=21% Similarity=0.463 Sum_probs=83.1
Q ss_pred ccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEE
Q 010286 54 TNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLL 133 (513)
Q Consensus 54 ~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~ 133 (513)
++|++.+.+++++++||+|||+||++|+++.|.++++++.+. +.+.++.|||+ ++.+++++|+|+++||++
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~-------~~~~~~~vd~~--~~~~l~~~~~i~~~Pt~~ 71 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ-------GQFVLAKVNCD--AQPQIAQQFGVQALPTVY 71 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhC-------CcEEEEEEecc--CCHHHHHHcCCCCCCEEE
Confidence 478888877667899999999999999999999999999986 35899999984 689999999999999999
Q ss_pred EecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHH
Q 010286 134 WGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWIN 171 (513)
Q Consensus 134 ~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~ 171 (513)
+|++|+. +..+.|..+.++|.+||+
T Consensus 72 ~~~~g~~-------------~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 72 LFAAGQP-------------VDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred EEeCCEE-------------eeeecCCCCHHHHHHHhC
Confidence 9987743 345788899999998873
No 19
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.74 E-value=1.9e-17 Score=143.94 Aligned_cols=89 Identities=35% Similarity=0.699 Sum_probs=79.7
Q ss_pred CcceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCC
Q 010286 46 DHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFS 125 (513)
Q Consensus 46 ~~v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~ 125 (513)
+++++++.++|++.+.+++ ++++|+|||+||++|+.+.|.|+++++.++++. +.+.++.|||+.+.+.++|++|+
T Consensus 1 ~~v~~l~~~~f~~~i~~~~-~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~----~~v~~~~vd~~~~~~~~~~~~~~ 75 (114)
T cd02992 1 DPVIVLDAASFNSALLGSP-SAWLVEFYASWCGHCRAFAPTWKKLARDLRKWR----PVVRVAAVDCADEENVALCRDFG 75 (114)
T ss_pred CCeEECCHHhHHHHHhcCC-CeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcC----CceEEEEEeccchhhHHHHHhCC
Confidence 3588999999999998875 789999999999999999999999999986432 46999999997777899999999
Q ss_pred CCccceEEEecCCc
Q 010286 126 VGHYPMLLWGSPSK 139 (513)
Q Consensus 126 I~~~PTl~~f~~g~ 139 (513)
|+++||+++|++|.
T Consensus 76 i~~~Pt~~lf~~~~ 89 (114)
T cd02992 76 VTGYPTLRYFPPFS 89 (114)
T ss_pred CCCCCEEEEECCCC
Confidence 99999999998875
No 20
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.74 E-value=9.9e-18 Score=142.28 Aligned_cols=94 Identities=19% Similarity=0.409 Sum_probs=79.8
Q ss_pred ccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEE
Q 010286 54 TNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLL 133 (513)
Q Consensus 54 ~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~ 133 (513)
+++.+.+.+.+++++||+|||+||++|++++|.|+++++.+. .+.++.||++ +.+++++++|+|+++||++
T Consensus 7 ~~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--------~~~~~~vd~~-~~~~~l~~~~~V~~~PT~~ 77 (100)
T cd02999 7 NIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP--------QIRHLAIEES-SIKPSLLSRYGVVGFPTIL 77 (100)
T ss_pred hHHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--------cCceEEEECC-CCCHHHHHhcCCeecCEEE
Confidence 355666777778999999999999999999999999999985 2678899974 2578999999999999999
Q ss_pred EecCCcccCCCCCCccccchhhhccCcCCHHHHHHHH
Q 010286 134 WGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (513)
Q Consensus 134 ~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i 170 (513)
+|++| . +..+.|.++.++|.+||
T Consensus 78 lf~~g-~-------------~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 78 LFNST-P-------------RVRYNGTRTLDSLAAFY 100 (100)
T ss_pred EEcCC-c-------------eeEecCCCCHHHHHhhC
Confidence 99876 2 24588999999999885
No 21
>PTZ00102 disulphide isomerase; Provisional
Probab=99.73 E-value=3e-17 Score=176.88 Aligned_cols=112 Identities=27% Similarity=0.618 Sum_probs=97.5
Q ss_pred cCcceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHC
Q 010286 45 VDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (513)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f 124 (513)
.+.++.|+.++|+..+.+. +.+||.|||+||+||+++.|+|+++++.+++.+ ..+.++.|||+ .+.++|++|
T Consensus 31 ~~~v~~l~~~~f~~~i~~~--~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~----~~i~~~~vd~~--~~~~l~~~~ 102 (477)
T PTZ00102 31 SEHVTVLTDSTFDKFITEN--EIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKK----SEIVLASVDAT--EEMELAQEF 102 (477)
T ss_pred CCCcEEcchhhHHHHHhcC--CcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcC----CcEEEEEEECC--CCHHHHHhc
Confidence 3568999999999999764 679999999999999999999999999886433 46999999995 578999999
Q ss_pred CCCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhccccC
Q 010286 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSY 178 (513)
Q Consensus 125 ~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~~~~ 178 (513)
+|++|||+++|.+|+ .+ .|.|.++.+.|.+|+.+.++..+
T Consensus 103 ~i~~~Pt~~~~~~g~-------------~~-~y~g~~~~~~l~~~l~~~~~~~~ 142 (477)
T PTZ00102 103 GVRGYPTIKFFNKGN-------------PV-NYSGGRTADGIVSWIKKLTGPAV 142 (477)
T ss_pred CCCcccEEEEEECCc-------------eE-EecCCCCHHHHHHHHHHhhCCCc
Confidence 999999999998762 12 68899999999999999987655
No 22
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.73 E-value=2.9e-17 Score=139.20 Aligned_cols=101 Identities=27% Similarity=0.540 Sum_probs=87.9
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCC
Q 010286 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG 127 (513)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~ 127 (513)
|+++++++|++.+.+. +++++|.||++||++|+++.|.|.++++.+. +.+.++.+|| +++.++|++|+|+
T Consensus 2 v~~l~~~~~~~~i~~~-~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~-------~~~~~~~id~--~~~~~~~~~~~i~ 71 (103)
T cd03001 2 VVELTDSNFDKKVLNS-DDVWLVEFYAPWCGHCKNLAPEWKKAAKALK-------GIVKVGAVDA--DVHQSLAQQYGVR 71 (103)
T ss_pred eEEcCHHhHHHHHhcC-CCcEEEEEECCCCHHHHHHhHHHHHHHHHhc-------CCceEEEEEC--cchHHHHHHCCCC
Confidence 6789999999998875 3678999999999999999999999999986 4589999998 4688999999999
Q ss_pred ccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHH
Q 010286 128 HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (513)
Q Consensus 128 ~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i 170 (513)
++||+++|++|+. ....|.|.++.++|.+|+
T Consensus 72 ~~P~~~~~~~~~~------------~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 72 GFPTIKVFGAGKN------------SPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred ccCEEEEECCCCc------------ceeecCCCCCHHHHHHHh
Confidence 9999999987721 235688999999999987
No 23
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.72 E-value=3.4e-17 Score=141.11 Aligned_cols=105 Identities=17% Similarity=0.434 Sum_probs=86.4
Q ss_pred cceecCcccHHHHHhc-CCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHH-C
Q 010286 47 HAVELNATNFDAVLRD-TPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDK-F 124 (513)
Q Consensus 47 ~v~~L~~~~f~~~l~~-~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~-f 124 (513)
.|++++.++|+..+.. ..++++||.|||+||+||+++.|.|+++++.+++ ..+.++.|||+. .+..+|.+ |
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~------~~~~~~~vd~d~-~~~~~~~~~~ 74 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG------SNVKVAKFNADG-EQREFAKEEL 74 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc------CCeEEEEEECCc-cchhhHHhhc
Confidence 4789999999998853 2457899999999999999999999999999973 248999999963 35678875 9
Q ss_pred CCCccceEEEecCCcccCCCCCCccccchhhhccCc-CCHHHHHHHH
Q 010286 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW-QTADGLLTWI 170 (513)
Q Consensus 125 ~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~-~~~e~L~~~i 170 (513)
+|+++||+++|++|. .....|.|. ++.+.|+.||
T Consensus 75 ~v~~~Pti~~f~~~~------------~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 75 QLKSFPTILFFPKNS------------RQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CCCcCCEEEEEcCCC------------CCceeccCCCCCHHHHHhhC
Confidence 999999999998752 123568884 8999999885
No 24
>PRK09381 trxA thioredoxin; Provisional
Probab=99.72 E-value=6.2e-17 Score=139.17 Aligned_cols=107 Identities=18% Similarity=0.392 Sum_probs=92.1
Q ss_pred cCcceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHC
Q 010286 45 VDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (513)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f 124 (513)
++.++++++++|++.+.+. +++++|+||++||++|+.+.|.++++++.+. +.+.++.|||+ .+..++++|
T Consensus 2 ~~~v~~~~~~~~~~~v~~~-~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~-------~~~~~~~vd~~--~~~~~~~~~ 71 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKA-DGAILVDFWAEWCGPCKMIAPILDEIADEYQ-------GKLTVAKLNID--QNPGTAPKY 71 (109)
T ss_pred CCcceeeChhhHHHHHhcC-CCeEEEEEECCCCHHHHHHhHHHHHHHHHhC-------CCcEEEEEECC--CChhHHHhC
Confidence 4678999999999877654 5789999999999999999999999999986 35899999994 578899999
Q ss_pred CCCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhc
Q 010286 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (513)
Q Consensus 125 ~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l 174 (513)
+|+++||+++|++|+. +..+.|..+.++|.++|.+++
T Consensus 72 ~v~~~Pt~~~~~~G~~-------------~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 72 GIRGIPTLLLFKNGEV-------------AATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred CCCcCCEEEEEeCCeE-------------EEEecCCCCHHHHHHHHHHhc
Confidence 9999999999988743 345678888999999998875
No 25
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.71 E-value=7.1e-17 Score=146.89 Aligned_cols=89 Identities=22% Similarity=0.457 Sum_probs=78.4
Q ss_pred cCcceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHC
Q 010286 45 VDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (513)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f 124 (513)
+..++.++.++|++.+...++++++|+|||+||++|++++|.|+++++++.+ ..+.|++||| +++++++++|
T Consensus 27 ~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~------~~v~f~~VDv--d~~~~la~~~ 98 (152)
T cd02962 27 PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN------NNLKFGKIDI--GRFPNVAEKF 98 (152)
T ss_pred CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc------CCeEEEEEEC--CCCHHHHHHc
Confidence 4578899999999998766667899999999999999999999999999863 2499999998 4688999999
Q ss_pred CCCc------cceEEEecCCccc
Q 010286 125 SVGH------YPMLLWGSPSKFV 141 (513)
Q Consensus 125 ~I~~------~PTl~~f~~g~~~ 141 (513)
+|++ +||+++|++|+..
T Consensus 99 ~V~~~~~v~~~PT~ilf~~Gk~v 121 (152)
T cd02962 99 RVSTSPLSKQLPTIILFQGGKEV 121 (152)
T ss_pred CceecCCcCCCCEEEEEECCEEE
Confidence 9988 9999999988654
No 26
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.71 E-value=2.9e-17 Score=142.09 Aligned_cols=103 Identities=12% Similarity=0.239 Sum_probs=85.9
Q ss_pred eecCcccHHHHH-hcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCC
Q 010286 49 VELNATNFDAVL-RDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG 127 (513)
Q Consensus 49 ~~L~~~~f~~~l-~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~ 127 (513)
..++.++|++.+ ..+.++++||.||||||++|+.+.|.++++++.+.+ ..+.++.|||+ .+..++++|+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~------~~v~~~~vd~d--~~~~l~~~~~V~ 78 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP------LGVGIATVNAG--HERRLARKLGAH 78 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh------cCceEEEEecc--ccHHHHHHcCCc
Confidence 356778888654 334568999999999999999999999999999963 24889999984 578899999999
Q ss_pred ccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHH
Q 010286 128 HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (513)
Q Consensus 128 ~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~ 172 (513)
++||+++|++|+. +..+.|..+.+.|.+||++
T Consensus 79 ~~Pt~~i~~~g~~-------------~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 79 SVPAIVGIINGQV-------------TFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred cCCEEEEEECCEE-------------EEEecCCCCHHHHHHHHhc
Confidence 9999999988743 3456788999999999975
No 27
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.71 E-value=6.3e-17 Score=139.34 Aligned_cols=81 Identities=15% Similarity=0.256 Sum_probs=71.7
Q ss_pred cccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceE
Q 010286 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPML 132 (513)
Q Consensus 53 ~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl 132 (513)
.++|++.+....++++||+|||+|||+|+.+.|.+++++.++. +.+.|+.||+ |++++++.+|+|+++||+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~-------~~v~f~kVDv--D~~~~la~~~~V~~iPTf 72 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVS-------NFAVIYLVDI--DEVPDFNKMYELYDPPTV 72 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHcc-------CceEEEEEEC--CCCHHHHHHcCCCCCCEE
Confidence 4678888876556899999999999999999999999999986 4589999997 578999999999999999
Q ss_pred EEecCCcccC
Q 010286 133 LWGSPSKFVA 142 (513)
Q Consensus 133 ~~f~~g~~~~ 142 (513)
++|++|+...
T Consensus 73 ~~fk~G~~v~ 82 (114)
T cd02954 73 MFFFRNKHMK 82 (114)
T ss_pred EEEECCEEEE
Confidence 9999987553
No 28
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3.7e-17 Score=159.69 Aligned_cols=110 Identities=20% Similarity=0.432 Sum_probs=97.7
Q ss_pred cCcceecCcccHHHHHh-cCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHH
Q 010286 45 VDHAVELNATNFDAVLR-DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDK 123 (513)
Q Consensus 45 ~~~v~~L~~~~f~~~l~-~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~ 123 (513)
...|+..|..||++.|. .+..+||||+||||||++|+.+.|.+++++..|+ |.+.+++||| |+++.++.+
T Consensus 22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~-------G~f~LakvN~--D~~p~vAaq 92 (304)
T COG3118 22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK-------GKFKLAKVNC--DAEPMVAAQ 92 (304)
T ss_pred cccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhC-------CceEEEEecC--CcchhHHHH
Confidence 34599999999999765 4455699999999999999999999999999997 6799999999 468999999
Q ss_pred CCCCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhccc
Q 010286 124 FSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (513)
Q Consensus 124 f~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~~ 176 (513)
|||+++||++.|.+|+.+ ..|.|....+.|.+|++++++.
T Consensus 93 fgiqsIPtV~af~dGqpV-------------dgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 93 FGVQSIPTVYAFKDGQPV-------------DGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred hCcCcCCeEEEeeCCcCc-------------cccCCCCcHHHHHHHHHHhcCh
Confidence 999999999999998544 4588999999999999999876
No 29
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2e-17 Score=173.57 Aligned_cols=125 Identities=21% Similarity=0.396 Sum_probs=103.9
Q ss_pred hhhhhccCCCccccccC--cceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEE
Q 010286 30 RAILRSLGDTEKKVEVD--HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILM 107 (513)
Q Consensus 30 ~~~~~~~~~~~~p~~~~--~v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~ 107 (513)
+...+.++++++|...+ +|..+.++||++++.+.. +-|||+|||||||||++++|.|++||+.|++. +.|.|
T Consensus 348 Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~de~-KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~-----~~vvi 421 (493)
T KOG0190|consen 348 GKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLDEG-KDVLVEFYAPWCGHCKALAPIYEELAEKYKDD-----ENVVI 421 (493)
T ss_pred CccccccccCCCCcccccCCeEEEeecCHHHHhhccc-cceEEEEcCcccchhhhhhhHHHHHHHHhcCC-----CCcEE
Confidence 35567788888886654 799999999999998874 67899999999999999999999999999863 46999
Q ss_pred EEEeccchhcHHHHHHCCCCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhcc
Q 010286 108 TRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (513)
Q Consensus 108 ~~VDc~~d~n~~lc~~f~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~ 175 (513)
+++|.+..+- ....|.+||||++|+.|. ++.+..|.|.|+.+++..||.+.-.
T Consensus 422 AKmDaTaNd~----~~~~~~~fPTI~~~pag~-----------k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 422 AKMDATANDV----PSLKVDGFPTILFFPAGH-----------KSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred EEeccccccC----ccccccccceEEEecCCC-----------CCCCcccCCCcchHHHHhhhccCCC
Confidence 9999874332 345678899999998873 2445678999999999999988754
No 30
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.70 E-value=6.7e-17 Score=137.12 Aligned_cols=103 Identities=25% Similarity=0.565 Sum_probs=88.6
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCC
Q 010286 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG 127 (513)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~ 127 (513)
++.+++.+|++.+.+. ++++|.|||+||++|+++.|.++++++.+.+. +.+.++.+||+.+.+..++++|+|+
T Consensus 2 ~~~l~~~~~~~~~~~~--~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~-----~~~~~~~id~~~~~~~~~~~~~~i~ 74 (104)
T cd02997 2 VVHLTDEDFRKFLKKE--KHVLVMFYAPWCGHCKKMKPEFTKAATELKED-----GKGVLAAVDCTKPEHDALKEEYNVK 74 (104)
T ss_pred eEEechHhHHHHHhhC--CCEEEEEECCCCHHHHHhCHHHHHHHHHHhhC-----CceEEEEEECCCCccHHHHHhCCCc
Confidence 6788999999998775 57899999999999999999999999998642 3589999999765589999999999
Q ss_pred ccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHH
Q 010286 128 HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (513)
Q Consensus 128 ~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i 170 (513)
++||+++|++|+. +..+.|..+.+.|.+||
T Consensus 75 ~~Pt~~~~~~g~~-------------~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 75 GFPTFKYFENGKF-------------VEKYEGERTAEDIIEFM 104 (104)
T ss_pred cccEEEEEeCCCe-------------eEEeCCCCCHHHHHhhC
Confidence 9999999988742 34678889999998875
No 31
>PHA02278 thioredoxin-like protein
Probab=99.69 E-value=9.5e-17 Score=136.76 Aligned_cols=95 Identities=13% Similarity=0.139 Sum_probs=76.6
Q ss_pred cccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchh--cHHHHHHCCCCccc
Q 010286 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFSVGHYP 130 (513)
Q Consensus 53 ~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~--n~~lc~~f~I~~~P 130 (513)
.++|++.+.+ ++++||+|||+|||+|+.++|.++++++++. ..+.++.||++.+. +.+++++|+|.++|
T Consensus 4 ~~~~~~~i~~--~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~-------~~~~~~~vdvd~~~~d~~~l~~~~~I~~iP 74 (103)
T PHA02278 4 LVDLNTAIRQ--KKDVIVMITQDNCGKCEILKSVIPMFQESGD-------IKKPILTLNLDAEDVDREKAVKLFDIMSTP 74 (103)
T ss_pred HHHHHHHHhC--CCcEEEEEECCCCHHHHhHHHHHHHHHhhhc-------CCceEEEEECCccccccHHHHHHCCCcccc
Confidence 4678888854 4789999999999999999999999998754 23678899985322 36899999999999
Q ss_pred eEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHH
Q 010286 131 MLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTW 169 (513)
Q Consensus 131 Tl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~ 169 (513)
|+++|++|+. +.++.|..+.+.|.++
T Consensus 75 T~i~fk~G~~-------------v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 75 VLIGYKDGQL-------------VKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEEEEECCEE-------------EEEEeCCCCHHHHHhh
Confidence 9999998843 4566787888777664
No 32
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.69 E-value=1.3e-16 Score=135.17 Aligned_cols=104 Identities=26% Similarity=0.528 Sum_probs=87.8
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCC
Q 010286 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (513)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I 126 (513)
+|..|++++|++.+.+.. ++++|.||++||++|+.+.|.|+++++.+++. ..+.++.|||+ ++ +++..+++
T Consensus 1 ~v~~l~~~~f~~~i~~~~-~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-----~~~~~~~id~~--~~-~~~~~~~~ 71 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSD-KDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-----DNVVIAKMDAT--AN-DVPSEFVV 71 (104)
T ss_pred CeEEEchhhhHHHHhCCC-CcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-----CCEEEEEEeCc--ch-hhhhhccC
Confidence 377899999999998764 78999999999999999999999999998642 25999999995 33 68899999
Q ss_pred CccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHH
Q 010286 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (513)
Q Consensus 127 ~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i 170 (513)
.++||+++|++|+. .....|.|.++.++|.+||
T Consensus 72 ~~~Pt~~~~~~~~~-----------~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 72 DGFPTILFFPAGDK-----------SNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCCCEEEEEcCCCc-----------CCceEccCCcCHHHHHhhC
Confidence 99999999988741 1235688999999999885
No 33
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.68 E-value=1.7e-16 Score=135.40 Aligned_cols=98 Identities=18% Similarity=0.232 Sum_probs=78.5
Q ss_pred CcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchh-cHHHHHHCCCCccc
Q 010286 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI-NTNLCDKFSVGHYP 130 (513)
Q Consensus 52 ~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~-n~~lc~~f~I~~~P 130 (513)
+.++|++.+.+.+++++||+|||+||++|+.+.|.++++++++. .+.|+.||++.+. ..+++++|+|+++|
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--------~v~~~~vd~d~~~~~~~l~~~~~V~~~P 73 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--------DVVFLLVNGDENDSTMELCRREKIIEVP 73 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--------CCEEEEEECCCChHHHHHHHHcCCCcCC
Confidence 45788999987767899999999999999999999999999983 3789999985321 25899999999999
Q ss_pred eEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHH
Q 010286 131 MLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWIN 171 (513)
Q Consensus 131 Tl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~ 171 (513)
|+++|++|+. +..+.| ...+.|.+-+.
T Consensus 74 t~~~~~~G~~-------------v~~~~G-~~~~~l~~~~~ 100 (103)
T cd02985 74 HFLFYKDGEK-------------IHEEEG-IGPDELIGDVL 100 (103)
T ss_pred EEEEEeCCeE-------------EEEEeC-CCHHHHHHHHH
Confidence 9999988753 344566 45566666554
No 34
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.68 E-value=2.2e-16 Score=133.18 Aligned_cols=102 Identities=28% Similarity=0.616 Sum_probs=87.7
Q ss_pred cCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccc
Q 010286 51 LNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYP 130 (513)
Q Consensus 51 L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~P 130 (513)
|++++|++.+.+ +++++|.||++||++|+.+.|.|+++++.+.+. +.+.++.+||+ ++..+|++|+|+++|
T Consensus 1 l~~~~~~~~~~~--~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~-----~~~~~~~~d~~--~~~~~~~~~~i~~~P 71 (102)
T TIGR01126 1 LTASNFDDIVLS--NKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD-----PDIVLAKVDAT--AEKDLASRFGVSGFP 71 (102)
T ss_pred CchhhHHHHhcc--CCcEEEEEECCCCHHHHhhChHHHHHHHHhccC-----CceEEEEEEcc--chHHHHHhCCCCcCC
Confidence 577899999873 578999999999999999999999999998642 25999999984 689999999999999
Q ss_pred eEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhc
Q 010286 131 MLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (513)
Q Consensus 131 Tl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l 174 (513)
|+++|++|.. +..+.|..+.++|..||++++
T Consensus 72 ~~~~~~~~~~-------------~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 72 TIKFFPKGKK-------------PVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred EEEEecCCCc-------------ceeecCCCCHHHHHHHHHhcC
Confidence 9999987632 356889999999999998753
No 35
>PRK10996 thioredoxin 2; Provisional
Probab=99.67 E-value=4.3e-16 Score=140.27 Aligned_cols=106 Identities=22% Similarity=0.501 Sum_probs=91.5
Q ss_pred cCcceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHC
Q 010286 45 VDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (513)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f 124 (513)
...++.++.++|++.+.+ +++++|.|||+||++|+.+.|.++++++.+. +.+.++.||+ +++.+++++|
T Consensus 34 ~~~~i~~~~~~~~~~i~~--~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~-------~~v~~~~vd~--~~~~~l~~~~ 102 (139)
T PRK10996 34 DGEVINATGETLDKLLQD--DLPVVIDFWAPWCGPCRNFAPIFEDVAAERS-------GKVRFVKVNT--EAERELSARF 102 (139)
T ss_pred CCCCEEcCHHHHHHHHhC--CCeEEEEEECCCCHHHHHHHHHHHHHHHHhC-------CCeEEEEEeC--CCCHHHHHhc
Confidence 445778999999998865 4789999999999999999999999999876 3589999998 4688999999
Q ss_pred CCCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhc
Q 010286 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (513)
Q Consensus 125 ~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l 174 (513)
+|+++||+++|++|+. +..+.|..+.+.|.+||++.+
T Consensus 103 ~V~~~Ptlii~~~G~~-------------v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 103 RIRSIPTIMIFKNGQV-------------VDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred CCCccCEEEEEECCEE-------------EEEEcCCCCHHHHHHHHHHhC
Confidence 9999999999988743 456788899999999998753
No 36
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.67 E-value=4.6e-16 Score=131.98 Aligned_cols=104 Identities=32% Similarity=0.621 Sum_probs=87.5
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCC
Q 010286 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG 127 (513)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~ 127 (513)
++++++++|++.+.++ +++++|.|||+||++|+.+.|.|+++++.+... +.+.++.+||+. .+.++|++|+|.
T Consensus 2 ~~~l~~~~~~~~~~~~-~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~-----~~~~~~~id~~~-~~~~~~~~~~i~ 74 (105)
T cd02998 2 VVELTDSNFDKVVGDD-KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE-----DDVVIAKVDADE-ANKDLAKKYGVS 74 (105)
T ss_pred eEEcchhcHHHHhcCC-CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC-----CCEEEEEEECCC-cchhhHHhCCCC
Confidence 6788999999988765 468999999999999999999999999998622 459999999952 178999999999
Q ss_pred ccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHH
Q 010286 128 HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (513)
Q Consensus 128 ~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i 170 (513)
++||+++|.+|. .....+.|.++.++|.+||
T Consensus 75 ~~P~~~~~~~~~------------~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 75 GFPTLKFFPKGS------------TEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CcCEEEEEeCCC------------CCccccCCccCHHHHHhhC
Confidence 999999998762 1234678899999998885
No 37
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.66 E-value=4.1e-16 Score=164.66 Aligned_cols=111 Identities=16% Similarity=0.387 Sum_probs=91.0
Q ss_pred ccCcceecCcccHHHHHh-cCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHH
Q 010286 44 EVDHAVELNATNFDAVLR-DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCD 122 (513)
Q Consensus 44 ~~~~v~~L~~~~f~~~l~-~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~ 122 (513)
.+..|++|+.+||+..+. ...++++||+||||||++|+.+.|.|+++|+.+.+. .+.|+.|||+.+.+...++
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~------~v~~~kVdvD~~~~~~~~~ 422 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS------GVKVAKFRADGDQKEFAKQ 422 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC------CcEEEEEECCCCccHHHHH
Confidence 455799999999999986 455688999999999999999999999999999642 3889999996543334457
Q ss_pred HCCCCccceEEEecCCcccCCCCCCccccchhhhcc-CcCCHHHHHHHHHH
Q 010286 123 KFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALE-DWQTADGLLTWINK 172 (513)
Q Consensus 123 ~f~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~-g~~~~e~L~~~i~~ 172 (513)
+|+|++|||+++|++|.. ....|. |.++.+.|..||+.
T Consensus 423 ~~~I~~~PTii~Fk~g~~------------~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 423 ELQLGSFPTILFFPKHSS------------RPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred HcCCCccceEEEEECCCC------------CceeCCCCCCCHHHHHHHHHh
Confidence 899999999999988731 123475 58999999999975
No 38
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.66 E-value=6.4e-16 Score=131.59 Aligned_cols=97 Identities=13% Similarity=0.367 Sum_probs=80.5
Q ss_pred cCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccc
Q 010286 51 LNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYP 130 (513)
Q Consensus 51 L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~P 130 (513)
-+.++|++.+.+ +++++|+|||+||++|+.+.|.++++++.+++ ..+.++.+|++ +.+++++|+|+++|
T Consensus 5 ~~~~~~~~~i~~--~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~------~~~~~~~vd~d---~~~~~~~~~v~~~P 73 (102)
T cd02948 5 NNQEEWEELLSN--KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD------DLLHFATAEAD---TIDTLKRYRGKCEP 73 (102)
T ss_pred cCHHHHHHHHcc--CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC------CcEEEEEEeCC---CHHHHHHcCCCcCc
Confidence 467889998864 57899999999999999999999999999863 24889999974 67899999999999
Q ss_pred eEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHH
Q 010286 131 MLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (513)
Q Consensus 131 Tl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~ 172 (513)
|+++|++|+. +....| .+.+.|.++|++
T Consensus 74 t~~~~~~g~~-------------~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 74 TFLFYKNGEL-------------VAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred EEEEEECCEE-------------EEEEec-CChHHHHHHHhh
Confidence 9999988743 344555 477888888864
No 39
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.63 E-value=1.6e-15 Score=129.49 Aligned_cols=97 Identities=19% Similarity=0.445 Sum_probs=79.7
Q ss_pred ccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEE
Q 010286 54 TNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLL 133 (513)
Q Consensus 54 ~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~ 133 (513)
++|+++.. +++++|.|||+||++|+.+.|.|+++++.+++.+ ..+.++.+||+ .+.+++++|+|.++||++
T Consensus 7 ~~~~~~~~---~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~----~~~~~~~vd~~--~~~~~~~~~~I~~~Pt~~ 77 (104)
T cd03000 7 DSFKDVRK---EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSG----SPVRVGKLDAT--AYSSIASEFGVRGYPTIK 77 (104)
T ss_pred hhhhhhcc---CCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcC----CcEEEEEEECc--cCHhHHhhcCCccccEEE
Confidence 67777432 3678999999999999999999999999986422 35899999994 578999999999999999
Q ss_pred EecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHh
Q 010286 134 WGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (513)
Q Consensus 134 ~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~ 173 (513)
+|.+|. ...+.|.++.++|.+|+++.
T Consensus 78 l~~~~~--------------~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 78 LLKGDL--------------AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred EEcCCC--------------ceeecCCCCHHHHHHHHHhh
Confidence 996541 13477889999999999763
No 40
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.1e-15 Score=130.43 Aligned_cols=92 Identities=22% Similarity=0.469 Sum_probs=73.4
Q ss_pred HHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEEec
Q 010286 57 DAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGS 136 (513)
Q Consensus 57 ~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~f~ 136 (513)
.....+.++++++|+|||+|||+|+.++|.+.+||.+|. + +.|++||++ + +.+++++++|+..||+.||+
T Consensus 13 ~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~-------~-v~Flkvdvd-e-~~~~~~~~~V~~~PTf~f~k 82 (106)
T KOG0907|consen 13 VLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP-------D-VVFLKVDVD-E-LEEVAKEFNVKAMPTFVFYK 82 (106)
T ss_pred HHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCC-------C-CEEEEEecc-c-CHhHHHhcCceEeeEEEEEE
Confidence 333344446899999999999999999999999999996 3 899999995 3 99999999999999999998
Q ss_pred CCcccCCCCCCccccchhhhccCcCCHHHHHHHHHH
Q 010286 137 PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (513)
Q Consensus 137 ~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~ 172 (513)
+|+ .+..+.|. +.+.+.+.|.+
T Consensus 83 ~g~-------------~~~~~vGa-~~~~l~~~i~~ 104 (106)
T KOG0907|consen 83 GGE-------------EVDEVVGA-NKAELEKKIAK 104 (106)
T ss_pred CCE-------------EEEEEecC-CHHHHHHHHHh
Confidence 874 33445553 44466666654
No 41
>PLN02309 5'-adenylylsulfate reductase
Probab=99.62 E-value=2.6e-15 Score=158.58 Aligned_cols=111 Identities=18% Similarity=0.426 Sum_probs=91.3
Q ss_pred ccCcceecCcccHHHHHh-cCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHH
Q 010286 44 EVDHAVELNATNFDAVLR-DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCD 122 (513)
Q Consensus 44 ~~~~v~~L~~~~f~~~l~-~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~ 122 (513)
....|+.|+.++|++.+. ...++++||+||||||++|+++.|.|+++++.+.+ ..+.|+.|||+ ..+.++|.
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~------~~V~f~kVD~d-~~~~~la~ 415 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG------SGVKVAKFRAD-GDQKEFAK 415 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc------CCeEEEEEECC-CcchHHHH
Confidence 345799999999999885 34468899999999999999999999999999864 24999999995 24678887
Q ss_pred -HCCCCccceEEEecCCcccCCCCCCccccchhhhcc-CcCCHHHHHHHHHHh
Q 010286 123 -KFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALE-DWQTADGLLTWINKQ 173 (513)
Q Consensus 123 -~f~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~-g~~~~e~L~~~i~~~ 173 (513)
+|+|++|||+++|++|.- ....|. |.++.+.|++||++.
T Consensus 416 ~~~~I~~~PTil~f~~g~~------------~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 416 QELQLGSFPTILLFPKNSS------------RPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred hhCCCceeeEEEEEeCCCC------------CeeecCCCCcCHHHHHHHHHHh
Confidence 599999999999987631 123465 479999999999863
No 42
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.61 E-value=4.4e-15 Score=124.77 Aligned_cols=101 Identities=24% Similarity=0.462 Sum_probs=85.2
Q ss_pred cCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccc
Q 010286 51 LNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYP 130 (513)
Q Consensus 51 L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~P 130 (513)
++.++|.+.+.+. +++++|.||++||++|+.+.|.++++++.+. +.+.++.||++ .+..++++|+|.++|
T Consensus 1 i~~~~~~~~~~~~-~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~vd~~--~~~~~~~~~~v~~~P 70 (101)
T TIGR01068 1 LTDANFDETIASS-DKPVLVDFWAPWCGPCKMIAPILEELAKEYE-------GKVKFVKLNVD--ENPDIAAKYGIRSIP 70 (101)
T ss_pred CCHHHHHHHHhhc-CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc-------CCeEEEEEECC--CCHHHHHHcCCCcCC
Confidence 3567888888765 4689999999999999999999999999885 35999999984 578899999999999
Q ss_pred eEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhc
Q 010286 131 MLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (513)
Q Consensus 131 Tl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l 174 (513)
|+++|++|+. +..+.|..+.+.|.+||++.+
T Consensus 71 ~~~~~~~g~~-------------~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 71 TLLLFKNGKE-------------VDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred EEEEEeCCcE-------------eeeecCCCCHHHHHHHHHhhC
Confidence 9999987632 245668888999999998753
No 43
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.61 E-value=3.7e-15 Score=133.24 Aligned_cols=103 Identities=10% Similarity=0.142 Sum_probs=83.7
Q ss_pred CcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccce
Q 010286 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPM 131 (513)
Q Consensus 52 ~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PT 131 (513)
+..+|++.+.+..++++||.|||+|||||+.+.|.++++|+++. +.+.|+.||+ |+++++++.|+|++.||
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~-------~~~~~~kVDV--De~~dla~~y~I~~~~t 80 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIK-------NFAVIYLVDI--TEVPDFNTMYELYDPCT 80 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcC-------CceEEEEEEC--CCCHHHHHHcCccCCCc
Confidence 46889999986667899999999999999999999999999986 4588999998 57999999999998876
Q ss_pred EE-EecCCcccCCCCCCccccchhhhccC--------cCCHHHHHHHHHHhcc
Q 010286 132 LL-WGSPSKFVAGSWEPNQEKKEIRALED--------WQTADGLLTWINKQTS 175 (513)
Q Consensus 132 l~-~f~~g~~~~~~~~~~~~~~~v~~~~g--------~~~~e~L~~~i~~~l~ 175 (513)
++ ||++|+. .+.+..| ..+.++|++.++..+.
T Consensus 81 ~~~ffk~g~~------------~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 81 VMFFFRNKHI------------MIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
T ss_pred EEEEEECCeE------------EEEEecccccccccccCCHHHHHHHHHHHHH
Confidence 66 8888751 2233334 4678888888877653
No 44
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.59 E-value=5.4e-15 Score=158.26 Aligned_cols=112 Identities=27% Similarity=0.550 Sum_probs=96.5
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCC
Q 010286 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (513)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I 126 (513)
.|+.|+.++|++.+.+. ++++|.|||+||++|+++.|.|.++++.+.+.+ ..+.++.|||+ ++.++|++|+|
T Consensus 2 ~v~~l~~~~~~~~i~~~--~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~----~~v~~~~vd~~--~~~~l~~~~~i 73 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSH--EFVLVEFYAPWCGHCKSLAPEYEKAADELKKKG----PPIKLAKVDAT--EEKDLAQKYGV 73 (462)
T ss_pred CceECCHHHHHHHHhcC--CCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcC----CceEEEEEECC--CcHHHHHhCCC
Confidence 57899999999999764 678999999999999999999999999987532 35999999995 57899999999
Q ss_pred CccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhccccC
Q 010286 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSY 178 (513)
Q Consensus 127 ~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~~~~ 178 (513)
++|||+++|++|+. .+..|.|.++.+.|.+|+.+.++..+
T Consensus 74 ~~~Pt~~~~~~g~~------------~~~~~~g~~~~~~l~~~i~~~~~~~~ 113 (462)
T TIGR01130 74 SGYPTLKIFRNGED------------SVSDYNGPRDADGIVKYMKKQSGPAV 113 (462)
T ss_pred ccccEEEEEeCCcc------------ceeEecCCCCHHHHHHHHHHhcCCCc
Confidence 99999999987732 13567899999999999999987554
No 45
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.59 E-value=9.6e-15 Score=131.96 Aligned_cols=102 Identities=16% Similarity=0.287 Sum_probs=83.4
Q ss_pred cccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceE
Q 010286 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPML 132 (513)
Q Consensus 53 ~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl 132 (513)
...|++.+.. ++++||+|||+||++|+.+.|.++++++.+. +.+.|+.||++.+.+.+++++|+|+++||+
T Consensus 10 ~~~~~~a~~~--gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~-------~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~ 80 (142)
T cd02950 10 STPPEVALSN--GKPTLVEFYADWCTVCQEMAPDVAKLKQKYG-------DQVNFVMLNVDNPKWLPEIDRYRVDGIPHF 80 (142)
T ss_pred cCCHHHHHhC--CCEEEEEEECCcCHHHHHhHHHHHHHHHHhc-------cCeeEEEEEcCCcccHHHHHHcCCCCCCEE
Confidence 4567777755 4789999999999999999999999999986 246788888755556789999999999999
Q ss_pred EEec-CCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhccc
Q 010286 133 LWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (513)
Q Consensus 133 ~~f~-~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~~ 176 (513)
++|. +|+. +..+.|..+.++|.++|.+.+..
T Consensus 81 v~~~~~G~~-------------v~~~~G~~~~~~l~~~l~~l~~~ 112 (142)
T cd02950 81 VFLDREGNE-------------EGQSIGLQPKQVLAQNLDALVAG 112 (142)
T ss_pred EEECCCCCE-------------EEEEeCCCCHHHHHHHHHHHHcC
Confidence 9995 5533 34567888899999999988753
No 46
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.59 E-value=5.1e-15 Score=128.41 Aligned_cols=84 Identities=17% Similarity=0.311 Sum_probs=73.3
Q ss_pred cceecCcccHHHHHhcCC-CCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCC
Q 010286 47 HAVELNATNFDAVLRDTP-ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFS 125 (513)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~-~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~ 125 (513)
.+.++++++|.+.+.+.+ +++++|.||||||++|+.+.|.++++++.+. .+.|+.||++ ++ +++++|+
T Consensus 5 ~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--------~v~f~~vd~~--~~-~l~~~~~ 73 (113)
T cd02957 5 EVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP--------ETKFVKINAE--KA-FLVNYLD 73 (113)
T ss_pred eEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--------CcEEEEEEch--hh-HHHHhcC
Confidence 467888999999987653 4789999999999999999999999999985 3789999984 45 9999999
Q ss_pred CCccceEEEecCCccc
Q 010286 126 VGHYPMLLWGSPSKFV 141 (513)
Q Consensus 126 I~~~PTl~~f~~g~~~ 141 (513)
|+++||+++|++|+..
T Consensus 74 i~~~Pt~~~f~~G~~v 89 (113)
T cd02957 74 IKVLPTLLVYKNGELI 89 (113)
T ss_pred CCcCCEEEEEECCEEE
Confidence 9999999999998654
No 47
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.59 E-value=7.5e-15 Score=122.62 Aligned_cols=100 Identities=35% Similarity=0.739 Sum_probs=84.6
Q ss_pred ecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCcc
Q 010286 50 ELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHY 129 (513)
Q Consensus 50 ~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~ 129 (513)
+++.++|.+.+.+.+ +++|.||++||++|+.+.|.|+++++.++. .+.+.++.|||+ ++..+|++|+|+++
T Consensus 2 ~l~~~~~~~~i~~~~--~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~--~~~~~~~~~~i~~~ 72 (101)
T cd02961 2 ELTDDNFDELVKDSK--DVLVEFYAPWCGHCKALAPEYEKLAKELKG-----DGKVVVAKVDCT--ANNDLCSEYGVRGY 72 (101)
T ss_pred cccHHHHHHHHhCCC--cEEEEEECCCCHHHHhhhHHHHHHHHHhcc-----CCceEEEEeecc--chHHHHHhCCCCCC
Confidence 578889999998863 789999999999999999999999999851 146999999995 58899999999999
Q ss_pred ceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHH
Q 010286 130 PMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (513)
Q Consensus 130 PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i 170 (513)
||+++|+++. ..+..+.|..+.++|.+|+
T Consensus 73 Pt~~~~~~~~------------~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 73 PTIKLFPNGS------------KEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CEEEEEcCCC------------cccccCCCCcCHHHHHhhC
Confidence 9999998762 1235678888999988874
No 48
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.58 E-value=6.9e-15 Score=125.92 Aligned_cols=96 Identities=18% Similarity=0.193 Sum_probs=81.2
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCC--CHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCC
Q 010286 48 AVELNATNFDAVLRDTPATYAVVEFFANW--CPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFS 125 (513)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vLV~FyA~W--Cg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~ 125 (513)
.-.+|..||++.+.. +..++|.|||+| ||+|+.++|.++++++++. +.+.|+.||+ +++++++.+|+
T Consensus 12 ~~~~~~~~~~~~~~~--~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~-------~~v~f~kVdi--d~~~~la~~f~ 80 (111)
T cd02965 12 WPRVDAATLDDWLAA--GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFP-------GRFRAAVVGR--ADEQALAARFG 80 (111)
T ss_pred CcccccccHHHHHhC--CCCEEEEecCCcccCcchhhhHhHHHHHHHHCC-------CcEEEEEEEC--CCCHHHHHHcC
Confidence 557899999988844 466899999997 9999999999999999986 4689999998 45789999999
Q ss_pred CCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHH
Q 010286 126 VGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLL 167 (513)
Q Consensus 126 I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~ 167 (513)
|+++||+++|++|+.. ..+.|..+.+++.
T Consensus 81 V~sIPTli~fkdGk~v-------------~~~~G~~~~~e~~ 109 (111)
T cd02965 81 VLRTPALLFFRDGRYV-------------GVLAGIRDWDEYV 109 (111)
T ss_pred CCcCCEEEEEECCEEE-------------EEEeCccCHHHHh
Confidence 9999999999998543 4466777777664
No 49
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.58 E-value=1.4e-15 Score=147.05 Aligned_cols=92 Identities=15% Similarity=0.404 Sum_probs=79.4
Q ss_pred CCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEEecCCcccCCC
Q 010286 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGS 144 (513)
Q Consensus 65 ~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~f~~g~~~~~~ 144 (513)
+..++|+||||||+||+++.|.|.++..++++-+ ..|+++++||+ ..+.++.+|+|+|||||++|+++.
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig----~PikVGKlDaT--~f~aiAnefgiqGYPTIk~~kgd~----- 111 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIG----LPIKVGKLDAT--RFPAIANEFGIQGYPTIKFFKGDH----- 111 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhcC----Cceeecccccc--cchhhHhhhccCCCceEEEecCCe-----
Confidence 4678999999999999999999999999988654 35999999997 589999999999999999998752
Q ss_pred CCCccccchhhhccCcCCHHHHHHHHHHhccc
Q 010286 145 WEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (513)
Q Consensus 145 ~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~~ 176 (513)
...|.|+|+.+.|++|..+-.++
T Consensus 112 ---------a~dYRG~R~Kd~iieFAhR~a~a 134 (468)
T KOG4277|consen 112 ---------AIDYRGGREKDAIIEFAHRCAAA 134 (468)
T ss_pred ---------eeecCCCccHHHHHHHHHhcccc
Confidence 35689999999999998765443
No 50
>PTZ00102 disulphide isomerase; Provisional
Probab=99.57 E-value=1.1e-14 Score=156.98 Aligned_cols=123 Identities=17% Similarity=0.413 Sum_probs=100.3
Q ss_pred hccCCCcccc-ccCcceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEec
Q 010286 34 RSLGDTEKKV-EVDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDC 112 (513)
Q Consensus 34 ~~~~~~~~p~-~~~~v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc 112 (513)
..+++++.|. ....+..+++++|++.+.++ ++++||.|||+||+||+.+.|.|+++|+.+.+. +.+.++.+||
T Consensus 344 ~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~-~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~-----~~v~~~~id~ 417 (477)
T PTZ00102 344 KSIKSEPIPEEQDGPVKVVVGNTFEEIVFKS-DKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN-----DSIIVAKMNG 417 (477)
T ss_pred cccccCCCCCCCCCCeEEecccchHHHHhcC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHhccC-----CcEEEEEEEC
Confidence 3344444443 34568999999999998765 478999999999999999999999999998642 3589999998
Q ss_pred cchhcHHHHHHCCCCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhccc
Q 010286 113 ALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (513)
Q Consensus 113 ~~d~n~~lc~~f~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~~ 176 (513)
+ .|..+|++|+|+++||+++|++|.. ....|.|.++.++|.+||+++...
T Consensus 418 ~--~~~~~~~~~~v~~~Pt~~~~~~~~~------------~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 418 T--ANETPLEEFSWSAFPTILFVKAGER------------TPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred C--CCccchhcCCCcccCeEEEEECCCc------------ceeEecCcCCHHHHHHHHHHcCCC
Confidence 5 5778899999999999999987631 123588999999999999998754
No 51
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.56 E-value=1.6e-14 Score=123.12 Aligned_cols=97 Identities=24% Similarity=0.363 Sum_probs=77.9
Q ss_pred ccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHH---HHHHHHhCCCCCCCCCeEEEEEEeccchh--cHHHHHHCCCCc
Q 010286 54 TNFDAVLRDTPATYAVVEFFANWCPACRNYKPQY---EKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFSVGH 128 (513)
Q Consensus 54 ~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~---~~lA~~~~~~~~~~~~~v~~~~VDc~~d~--n~~lc~~f~I~~ 128 (513)
+.|++++.. ++++||+|||+||++|+.+.|.+ .++++.+. +.+.++.||++.+. +.+++++|+|++
T Consensus 2 ~~~~~~~~~--~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-------~~~~~~~vd~~~~~~~~~~~~~~~~i~~ 72 (104)
T cd02953 2 AALAQALAQ--GKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK-------KDVVLLRADWTKNDPEITALLKRFGVFG 72 (104)
T ss_pred HHHHHHHHc--CCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh-------CCeEEEEEecCCCCHHHHHHHHHcCCCC
Confidence 467777765 47899999999999999999998 67888875 25899999985322 578999999999
Q ss_pred cceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHH
Q 010286 129 YPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (513)
Q Consensus 129 ~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i 170 (513)
+||+++|.+|. +..+..+.|..+.++|.++|
T Consensus 73 ~Pti~~~~~~~-----------g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 73 PPTYLFYGPGG-----------EPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCEEEEECCCC-----------CCCCcccccccCHHHHHHHh
Confidence 99999997420 13345678999999998876
No 52
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.56 E-value=1.7e-14 Score=120.94 Aligned_cols=78 Identities=17% Similarity=0.453 Sum_probs=69.1
Q ss_pred cccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceE
Q 010286 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPML 132 (513)
Q Consensus 53 ~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl 132 (513)
.++|++.+.+..+++++|.||++||++|+.+.|.++++++.+. +.+.++.||+ +++.+++++|+|+++||+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~-------~~i~~~~vd~--~~~~~~~~~~~i~~~Pt~ 72 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAF-------PSVLFLSIEA--EELPEISEKFEITAVPTF 72 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhC-------CceEEEEEcc--ccCHHHHHhcCCccccEE
Confidence 4678888887656889999999999999999999999999973 3599999997 468899999999999999
Q ss_pred EEecCCc
Q 010286 133 LWGSPSK 139 (513)
Q Consensus 133 ~~f~~g~ 139 (513)
++|++|+
T Consensus 73 ~~~~~g~ 79 (97)
T cd02984 73 VFFRNGT 79 (97)
T ss_pred EEEECCE
Confidence 9998874
No 53
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.56 E-value=1.5e-14 Score=123.84 Aligned_cols=79 Identities=13% Similarity=0.151 Sum_probs=70.1
Q ss_pred cccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceE
Q 010286 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPML 132 (513)
Q Consensus 53 ~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl 132 (513)
.+.|++.+.+..+++++|.|+|+|||+|+.+.|.++++|+++. +.+.|+.||+ |++++++++|+|.+.||+
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~-------~~~~f~kVDV--Dev~dva~~y~I~amPtf 72 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLS-------KMASIYLVDV--DKVPVYTQYFDISYIPST 72 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHcc-------CceEEEEEec--cccHHHHHhcCceeCcEE
Confidence 3567888876667999999999999999999999999999995 2389999997 579999999999999999
Q ss_pred EEecCCcc
Q 010286 133 LWGSPSKF 140 (513)
Q Consensus 133 ~~f~~g~~ 140 (513)
+||++|+-
T Consensus 73 vffkngkh 80 (114)
T cd02986 73 IFFFNGQH 80 (114)
T ss_pred EEEECCcE
Confidence 99998853
No 54
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.55 E-value=2.7e-14 Score=123.90 Aligned_cols=83 Identities=16% Similarity=0.229 Sum_probs=72.5
Q ss_pred cceecCc-ccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCC
Q 010286 47 HAVELNA-TNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFS 125 (513)
Q Consensus 47 ~v~~L~~-~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~ 125 (513)
.+..+++ ++|++.+.+. ++++|.||++||++|+.+.|.++++++.+. .+.|+.||+ +++.+++++|+
T Consensus 5 ~v~~i~~~~~~~~~i~~~--~~vvV~f~a~~c~~C~~~~p~l~~la~~~~--------~i~f~~Vd~--~~~~~l~~~~~ 72 (113)
T cd02989 5 KYREVSDEKEFFEIVKSS--ERVVCHFYHPEFFRCKIMDKHLEILAKKHL--------ETKFIKVNA--EKAPFLVEKLN 72 (113)
T ss_pred CeEEeCCHHHHHHHHhCC--CcEEEEEECCCCccHHHHHHHHHHHHHHcC--------CCEEEEEEc--ccCHHHHHHCC
Confidence 3566666 8999999764 679999999999999999999999999874 379999997 56899999999
Q ss_pred CCccceEEEecCCccc
Q 010286 126 VGHYPMLLWGSPSKFV 141 (513)
Q Consensus 126 I~~~PTl~~f~~g~~~ 141 (513)
|+++||+++|++|+..
T Consensus 73 v~~vPt~l~fk~G~~v 88 (113)
T cd02989 73 IKVLPTVILFKNGKTV 88 (113)
T ss_pred CccCCEEEEEECCEEE
Confidence 9999999999998654
No 55
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.55 E-value=1.2e-14 Score=141.10 Aligned_cols=109 Identities=27% Similarity=0.557 Sum_probs=94.6
Q ss_pred cCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccc
Q 010286 51 LNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYP 130 (513)
Q Consensus 51 L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~P 130 (513)
|+.+|++.++.. +..++|.|||+||+..+.++|.|++.|+.++..-+. +++.++.|||+ .+..|+.+|.|..||
T Consensus 1 lt~~N~~~il~s--~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~--~kvvwg~VDcd--~e~~ia~ky~I~KyP 74 (375)
T KOG0912|consen 1 LTSENIDSILDS--NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPE--GKVVWGKVDCD--KEDDIADKYHINKYP 74 (375)
T ss_pred CccccHHHhhcc--ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCC--cceEEEEcccc--hhhHHhhhhccccCc
Confidence 456788888877 478999999999999999999999999999865532 78999999995 578999999999999
Q ss_pred eEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhcccc
Q 010286 131 MLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRS 177 (513)
Q Consensus 131 Tl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~~~ 177 (513)
|+++|.+|.+.. ..|.|.|+.+.|.+||++++...
T Consensus 75 TlKvfrnG~~~~------------rEYRg~RsVeaL~efi~kq~s~~ 109 (375)
T KOG0912|consen 75 TLKVFRNGEMMK------------REYRGQRSVEALIEFIEKQLSDP 109 (375)
T ss_pred eeeeeeccchhh------------hhhccchhHHHHHHHHHHHhccH
Confidence 999999986542 36899999999999999998644
No 56
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.9e-14 Score=134.26 Aligned_cols=104 Identities=21% Similarity=0.377 Sum_probs=88.6
Q ss_pred cCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccc
Q 010286 51 LNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYP 130 (513)
Q Consensus 51 L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~P 130 (513)
-++.+|+..+.....+.++|+|+|+|||||++.+|.|..++..|. ...|.+||+ |+.+.++..+||...|
T Consensus 7 ~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp--------~aVFlkVdV--d~c~~taa~~gV~amP 76 (288)
T KOG0908|consen 7 NSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP--------GAVFLKVDV--DECRGTAATNGVNAMP 76 (288)
T ss_pred cCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc--------ccEEEEEeH--HHhhchhhhcCcccCc
Confidence 356889999988878899999999999999999999999999995 378999997 6788999999999999
Q ss_pred eEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhccccC
Q 010286 131 MLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSY 178 (513)
Q Consensus 131 Tl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~~~~ 178 (513)
|+++|.+|. .+..+.| .++..|.+.|.++++++.
T Consensus 77 TFiff~ng~-------------kid~~qG-Ad~~gLe~kv~~~~stsa 110 (288)
T KOG0908|consen 77 TFIFFRNGV-------------KIDQIQG-ADASGLEEKVAKYASTSA 110 (288)
T ss_pred eEEEEecCe-------------EeeeecC-CCHHHHHHHHHHHhccCc
Confidence 999999873 3455665 578888888888876543
No 57
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.49 E-value=1.9e-13 Score=115.11 Aligned_cols=93 Identities=14% Similarity=0.324 Sum_probs=78.1
Q ss_pred HHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEEe
Q 010286 56 FDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWG 135 (513)
Q Consensus 56 f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~f 135 (513)
++..+.+. +++++|.||++||++|+.+.|.++++++++. +.+.++.||+ +++++++.+++|.++||+++|
T Consensus 5 ~~~~~~~~-~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-------~~v~~~~id~--d~~~~l~~~~~v~~vPt~~i~ 74 (97)
T cd02949 5 LRKLYHES-DRLILVLYTSPTCGPCRTLKPILNKVIDEFD-------GAVHFVEIDI--DEDQEIAEAAGIMGTPTVQFF 74 (97)
T ss_pred HHHHHHhC-CCeEEEEEECCCChhHHHHHHHHHHHHHHhC-------CceEEEEEEC--CCCHHHHHHCCCeeccEEEEE
Confidence 34556554 5789999999999999999999999999986 3589999998 467899999999999999999
Q ss_pred cCCcccCCCCCCccccchhhhccCcCCHHHHHHHHH
Q 010286 136 SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWIN 171 (513)
Q Consensus 136 ~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~ 171 (513)
++|+ .+..+.|..+.++|.++++
T Consensus 75 ~~g~-------------~v~~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 75 KDKE-------------LVKEISGVKMKSEYREFIE 97 (97)
T ss_pred ECCe-------------EEEEEeCCccHHHHHHhhC
Confidence 8763 3456788888999888873
No 58
>PTZ00051 thioredoxin; Provisional
Probab=99.47 E-value=1.9e-13 Score=114.91 Aligned_cols=77 Identities=19% Similarity=0.523 Sum_probs=66.5
Q ss_pred CcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccce
Q 010286 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPM 131 (513)
Q Consensus 52 ~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PT 131 (513)
+.++|++++.. +++++|.||++||++|+.+.|.++++++.+. .+.++.||++ ++.+++++|+|+++||
T Consensus 7 ~~~~~~~~~~~--~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~--------~~~~~~vd~~--~~~~~~~~~~v~~~Pt 74 (98)
T PTZ00051 7 SQAEFESTLSQ--NELVIVDFYAEWCGPCKRIAPFYEECSKEYT--------KMVFVKVDVD--ELSEVAEKENITSMPT 74 (98)
T ss_pred CHHHHHHHHhc--CCeEEEEEECCCCHHHHHHhHHHHHHHHHcC--------CcEEEEEECc--chHHHHHHCCCceeeE
Confidence 34678887765 4789999999999999999999999999764 3889999984 6789999999999999
Q ss_pred EEEecCCcc
Q 010286 132 LLWGSPSKF 140 (513)
Q Consensus 132 l~~f~~g~~ 140 (513)
+++|++|+.
T Consensus 75 ~~~~~~g~~ 83 (98)
T PTZ00051 75 FKVFKNGSV 83 (98)
T ss_pred EEEEeCCeE
Confidence 999988754
No 59
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.46 E-value=3.2e-13 Score=126.18 Aligned_cols=110 Identities=15% Similarity=0.265 Sum_probs=85.7
Q ss_pred cCcceecCc-ccHHHHHhcCC-CCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHH
Q 010286 45 VDHAVELNA-TNFDAVLRDTP-ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCD 122 (513)
Q Consensus 45 ~~~v~~L~~-~~f~~~l~~~~-~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~ 122 (513)
...+..++. ++|.+.+.+.. +.+++|.||++||++|+.+.|.++++|+.+. .+.|+.||++ ++ +++.
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--------~vkF~kVd~d--~~-~l~~ 129 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP--------AVKFCKIRAS--AT-GASD 129 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC--------CeEEEEEecc--ch-hhHH
Confidence 456888988 99999987642 3589999999999999999999999999974 4899999984 34 8999
Q ss_pred HCCCCccceEEEecCCcccCCCCCCccccchhh-hccCcCCHHHHHHHHHH
Q 010286 123 KFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIR-ALEDWQTADGLLTWINK 172 (513)
Q Consensus 123 ~f~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~-~~~g~~~~e~L~~~i~~ 172 (513)
+|+|.++||+++|++|+....- .... ......+.+.|..++.+
T Consensus 130 ~f~v~~vPTlllyk~G~~v~~~-------vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 130 EFDTDALPALLVYKGGELIGNF-------VRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred hCCCCCCCEEEEEECCEEEEEE-------echHHhcCCCCCHHHHHHHHHh
Confidence 9999999999999998755310 0011 11224677777777654
No 60
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.45 E-value=3.5e-13 Score=144.30 Aligned_cols=125 Identities=22% Similarity=0.424 Sum_probs=98.1
Q ss_pred hccCCCcccc-ccCcceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEec
Q 010286 34 RSLGDTEKKV-EVDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDC 112 (513)
Q Consensus 34 ~~~~~~~~p~-~~~~v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc 112 (513)
+..++++.|. ....+..|++++|++.+.+. ++.+||.|||+||++|+.+.|.|+++++.+++.+ ..+.++.|||
T Consensus 333 ~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~-~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~----~~i~~~~id~ 407 (462)
T TIGR01130 333 PYLKSEPIPEDDEGPVKVLVGKNFDEIVLDE-TKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAE----SDVVIAKMDA 407 (462)
T ss_pred eeeccCCCCccCCCccEEeeCcCHHHHhccC-CCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCC----CcEEEEEEEC
Confidence 3344554553 34578899999999998775 4789999999999999999999999999997421 2699999999
Q ss_pred cchhcHHHHHHCCCCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhccccC
Q 010286 113 ALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSY 178 (513)
Q Consensus 113 ~~d~n~~lc~~f~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~~~~ 178 (513)
+. | ++.. ++|+++||+++|++|... ....+.|.++.+.|.+||.++....+
T Consensus 408 ~~--n-~~~~-~~i~~~Pt~~~~~~~~~~-----------~~~~~~g~~~~~~l~~~l~~~~~~~~ 458 (462)
T TIGR01130 408 TA--N-DVPP-FEVEGFPTIKFVPAGKKS-----------EPVPYDGDRTLEDFSKFIAKHATFPL 458 (462)
T ss_pred CC--C-ccCC-CCccccCEEEEEeCCCCc-----------CceEecCcCCHHHHHHHHHhcCCCCC
Confidence 63 3 3444 999999999999877321 12457889999999999999875443
No 61
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.40 E-value=1.4e-12 Score=106.59 Aligned_cols=92 Identities=23% Similarity=0.506 Sum_probs=76.9
Q ss_pred ccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEE
Q 010286 54 TNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLL 133 (513)
Q Consensus 54 ~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~ 133 (513)
++|+..+.+. ++++|.||++||++|+.+.|.++++++. . +.+.++.+|++ .+.+++++|+|.++||++
T Consensus 1 ~~~~~~~~~~--~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~-------~~~~~~~i~~~--~~~~~~~~~~v~~~P~~~ 68 (93)
T cd02947 1 EEFEELIKSA--KPVVVDFWAPWCGPCKAIAPVLEELAEE-Y-------PKVKFVKVDVD--ENPELAEEYGVRSIPTFL 68 (93)
T ss_pred CchHHHHhcC--CcEEEEEECCCChhHHHhhHHHHHHHHH-C-------CCceEEEEECC--CChhHHHhcCcccccEEE
Confidence 3577777775 6789999999999999999999999988 2 35899999984 578999999999999999
Q ss_pred EecCCcccCCCCCCccccchhhhccCcCCHHHHHHHH
Q 010286 134 WGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (513)
Q Consensus 134 ~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i 170 (513)
+|.+|+ .+..+.|..+.+.|.++|
T Consensus 69 ~~~~g~-------------~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 69 FFKNGK-------------EVDRVVGADPKEELEEFL 92 (93)
T ss_pred EEECCE-------------EEEEEecCCCHHHHHHHh
Confidence 998774 234567777888888876
No 62
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.40 E-value=1.5e-12 Score=112.95 Aligned_cols=97 Identities=13% Similarity=0.134 Sum_probs=76.9
Q ss_pred HHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEEe
Q 010286 56 FDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWG 135 (513)
Q Consensus 56 f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~f 135 (513)
|.+.+.+ ...++|.|||+||++|+.++|.+++++..+. .+.+..||. +++++++++|+|.++||+++|
T Consensus 15 ~~~~l~~--~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~--------~i~~~~vd~--d~~~~l~~~~~v~~vPt~~i~ 82 (113)
T cd02975 15 FFKEMKN--PVDLVVFSSKEGCQYCEVTKQLLEELSELSD--------KLKLEIYDF--DEDKEKAEKYGVERVPTTIFL 82 (113)
T ss_pred HHHHhCC--CeEEEEEeCCCCCCChHHHHHHHHHHHHhcC--------ceEEEEEeC--CcCHHHHHHcCCCcCCEEEEE
Confidence 4444544 2557899999999999999999999998752 488999997 468999999999999999999
Q ss_pred cCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhcc
Q 010286 136 SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (513)
Q Consensus 136 ~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~ 175 (513)
++|.... . ..+.|..+.+++.+||+..+.
T Consensus 83 ~~g~~~~----------~-~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 83 QDGGKDG----------G-IRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred eCCeecc----------e-EEEEecCchHHHHHHHHHHHh
Confidence 8763221 1 246788888999999987653
No 63
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.2e-12 Score=137.48 Aligned_cols=107 Identities=27% Similarity=0.525 Sum_probs=87.5
Q ss_pred eecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCc
Q 010286 49 VELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGH 128 (513)
Q Consensus 49 ~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~ 128 (513)
..+...+|...+... +++++|+||||||+||+.+.|+|+++++.++ +.+.++.|||+ ++.++|++|+|++
T Consensus 32 ~~~~~~~~~~~~~~~-~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~-------~~~~~~~vd~~--~~~~~~~~y~i~g 101 (383)
T KOG0191|consen 32 SELTLDSFFDFLLKD-DSPWLVEFYAPWCGHCKKLAPTYKKLAKALK-------GKVKIGAVDCD--EHKDLCEKYGIQG 101 (383)
T ss_pred hhhhccccHHHhhcc-CCceEEEEECCCCcchhhhchHHHHHHHHhc-------CceEEEEeCch--hhHHHHHhcCCcc
Confidence 334455555555444 3668999999999999999999999999997 46999999995 6899999999999
Q ss_pred cceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhccccC
Q 010286 129 YPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSY 178 (513)
Q Consensus 129 ~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~~~~ 178 (513)
|||+.+|.+| . .+..+.|.++.+.+.+|+.+.+...+
T Consensus 102 fPtl~~f~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (383)
T KOG0191|consen 102 FPTLKVFRPG-K------------KPIDYSGPRNAESLAEFLIKELEPSV 138 (383)
T ss_pred CcEEEEEcCC-C------------ceeeccCcccHHHHHHHHHHhhcccc
Confidence 9999999887 1 12457788999999999998876554
No 64
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.38 E-value=2.3e-12 Score=113.54 Aligned_cols=102 Identities=20% Similarity=0.363 Sum_probs=76.9
Q ss_pred cHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHH---HHHHHhCCCCCCCCCeEEEEEEeccch-----------hcHHH
Q 010286 55 NFDAVLRDTPATYAVVEFFANWCPACRNYKPQYE---KVARLFNGPNAAHPGIILMTRVDCALK-----------INTNL 120 (513)
Q Consensus 55 ~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~---~lA~~~~~~~~~~~~~v~~~~VDc~~d-----------~n~~l 120 (513)
.++++..+.+ +++||.|||+||++|+.+.|.+. .+.+.++ +.+.++.||.+.+ .+.++
T Consensus 5 ~~~~a~~~~~-k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~d~~~~~~~~~~~~~~~~~l 76 (125)
T cd02951 5 DLAEAAADGK-KPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR-------AHFVVVYINIDGDKEVTDFDGEALSEKEL 76 (125)
T ss_pred HHHHHHHcCC-CcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH-------hheEEEEEEccCCceeeccCCCCccHHHH
Confidence 3444555421 78999999999999999999885 5666664 2477889997532 24789
Q ss_pred HHHCCCCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhcc
Q 010286 121 CDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (513)
Q Consensus 121 c~~f~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~ 175 (513)
+.+|+|+++||+++|.++ | ++.+..+.|..+.+.+.++|+..+.
T Consensus 77 ~~~~~v~~~Pt~~~~~~~----g-------g~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 77 ARKYRVRFTPTVIFLDPE----G-------GKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred HHHcCCccccEEEEEcCC----C-------CceeEEecCCCCHHHHHHHHHHHHh
Confidence 999999999999998763 0 0334567888899999999987664
No 65
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.37 E-value=2.9e-12 Score=112.70 Aligned_cols=99 Identities=16% Similarity=0.087 Sum_probs=75.4
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchh---------cH
Q 010286 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI---------NT 118 (513)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~---------n~ 118 (513)
+..++.++|.+.+.+. +.++|+|+++|||+|+.+.|.+++++++.+ +.++.||.+.+. -.
T Consensus 8 ~~~it~~~~~~~i~~~--~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~---------~~~y~vdvd~~~~~~~~~~~~~~ 76 (122)
T TIGR01295 8 LEVTTVVRALEALDKK--ETATFFIGRKTCPYCRKFSGTLSGVVAQTK---------APIYYIDSENNGSFEMSSLNDLT 76 (122)
T ss_pred ceecCHHHHHHHHHcC--CcEEEEEECCCChhHHHHhHHHHHHHHhcC---------CcEEEEECCCccCcCcccHHHHH
Confidence 5677888899999874 568999999999999999999999999832 567778864321 13
Q ss_pred HHHHHCC----CCccceEEEecCCcccCCCCCCccccchhhhccC-cCCHHHHHHHH
Q 010286 119 NLCDKFS----VGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALED-WQTADGLLTWI 170 (513)
Q Consensus 119 ~lc~~f~----I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g-~~~~e~L~~~i 170 (513)
++..+|+ |.++||+++|++|+.. ....| ..+.++|.+|+
T Consensus 77 ~~~~~~~i~~~i~~~PT~v~~k~Gk~v-------------~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 77 AFRSRFGIPTSFMGTPTFVHITDGKQV-------------SVRCGSSTTAQELQDIA 120 (122)
T ss_pred HHHHHcCCcccCCCCCEEEEEeCCeEE-------------EEEeCCCCCHHHHHHHh
Confidence 5666665 5569999999998543 34555 56788888876
No 66
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.35 E-value=2.7e-12 Score=111.85 Aligned_cols=80 Identities=16% Similarity=0.289 Sum_probs=68.2
Q ss_pred CcccHHHHHhcCCCCeEEEEEec-------CCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-----hhcHH
Q 010286 52 NATNFDAVLRDTPATYAVVEFFA-------NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-----KINTN 119 (513)
Q Consensus 52 ~~~~f~~~l~~~~~~~vLV~FyA-------~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-----d~n~~ 119 (513)
+.++|.+.+.+.++++++|.||| +|||+|+.+.|.++++++.+. +.+.++.||++. +.+.+
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-------~~v~fv~Vdvd~~~~w~d~~~~ 80 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP-------EDCVFIYCDVGDRPYWRDPNNP 80 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC-------CCCEEEEEEcCCcccccCcchh
Confidence 45778888887666899999999 999999999999999999985 348899999853 23679
Q ss_pred HHHHCCCC-ccceEEEecCC
Q 010286 120 LCDKFSVG-HYPMLLWGSPS 138 (513)
Q Consensus 120 lc~~f~I~-~~PTl~~f~~g 138 (513)
+..+|+|+ ++||+++|..|
T Consensus 81 ~~~~~~I~~~iPT~~~~~~~ 100 (119)
T cd02952 81 FRTDPKLTTGVPTLLRWKTP 100 (119)
T ss_pred hHhccCcccCCCEEEEEcCC
Confidence 99999999 99999999665
No 67
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=5.6e-12 Score=132.41 Aligned_cols=111 Identities=26% Similarity=0.596 Sum_probs=95.8
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCC
Q 010286 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (513)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I 126 (513)
.+..++..+|+..+.+.. ..++|.||+|||+||+.++|+|++++..+... ..+.++.+||+ .+..+|.+++|
T Consensus 145 ~v~~l~~~~~~~~~~~~~-~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~-----~~v~~~~~d~~--~~~~~~~~~~v 216 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSD-ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSK-----ENVELGKIDAT--VHKSLASRLEV 216 (383)
T ss_pred ceEEccccchhhhhhccC-cceEEEEeccccHHhhhcChHHHHHHHHhccC-----cceEEEeeccc--hHHHHhhhhcc
Confidence 388999999999988875 55799999999999999999999999998641 46999999996 57899999999
Q ss_pred CccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhcccc
Q 010286 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRS 177 (513)
Q Consensus 127 ~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~~~ 177 (513)
++|||+++|++|.. ....+.|.|+.+.|..|+++..+..
T Consensus 217 ~~~Pt~~~f~~~~~------------~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 217 RGYPTLKLFPPGEE------------DIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred cCCceEEEecCCCc------------ccccccccccHHHHHHHHHhhcCCC
Confidence 99999999988732 1356788999999999999987763
No 68
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.31 E-value=1e-11 Score=117.60 Aligned_cols=108 Identities=14% Similarity=0.213 Sum_probs=82.3
Q ss_pred cCcceecCcccHHHHHhcC-CCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHH
Q 010286 45 VDHAVELNATNFDAVLRDT-PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDK 123 (513)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~-~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~ 123 (513)
...+..++..+|...+.+. ++.+|+|.||++||++|+.+.|.+++||+.+. .++|++||.+ . ....
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--------~vkFvkI~ad--~---~~~~ 147 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP--------DTKFVKIIST--Q---CIPN 147 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC--------CCEEEEEEhH--H---hHhh
Confidence 4568899999999877654 34689999999999999999999999999984 3899999963 2 3689
Q ss_pred CCCCccceEEEecCCcccCCCCCCccccchhhhccC-cCCHHHHHHHHHH
Q 010286 124 FSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALED-WQTADGLLTWINK 172 (513)
Q Consensus 124 f~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g-~~~~e~L~~~i~~ 172 (513)
|+|.++||+++|++|+....- .....+.| ..+.++|..++.+
T Consensus 148 ~~i~~lPTlliyk~G~~v~~i-------vG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 148 YPDKNLPTILVYRNGDIVKQF-------IGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CCCCCCCEEEEEECCEEEEEE-------eCchhhCCCCCCHHHHHHHHHh
Confidence 999999999999999755320 01112222 4667777776653
No 69
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.28 E-value=5.4e-11 Score=110.51 Aligned_cols=106 Identities=15% Similarity=0.316 Sum_probs=80.1
Q ss_pred CcceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccch----------
Q 010286 46 DHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK---------- 115 (513)
Q Consensus 46 ~~v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d---------- 115 (513)
..+..++++.+... +..+++++|+||++||++|+...|.+.++++++.+ ..+.++.|+++.+
T Consensus 44 ~~~~~~~g~~~~l~--~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~------~~~~vi~i~~d~~~~~~~~~~~~ 115 (173)
T PRK03147 44 FVLTDLEGKKIELK--DLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE------KGVEIIAVNVDETELAVKNFVNR 115 (173)
T ss_pred cEeecCCCCEEeHH--HcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc------CCeEEEEEEcCCCHHHHHHHHHH
Confidence 34555666655422 22357899999999999999999999999999974 2378888887532
Q ss_pred ----------hcHHHHHHCCCCccceEEEec-CCcccCCCCCCccccchhhhccCcCCHHHHHHHHHH
Q 010286 116 ----------INTNLCDKFSVGHYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (513)
Q Consensus 116 ----------~n~~lc~~f~I~~~PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~ 172 (513)
.+.++++.|+|.++|+++++. +|+ .+..+.|..+.+++.+++++
T Consensus 116 ~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~-------------i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 116 YGLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGK-------------VVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred hCCCceEEECCcchHHHHcCCCCcCeEEEECCCCc-------------EEEEEeCCCCHHHHHHHHHH
Confidence 356889999999999988875 332 23456788899999988865
No 70
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.27 E-value=4.2e-11 Score=109.34 Aligned_cols=87 Identities=15% Similarity=0.266 Sum_probs=61.6
Q ss_pred CeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchh----------cHHHH-HHC---CCCccce
Q 010286 66 TYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI----------NTNLC-DKF---SVGHYPM 131 (513)
Q Consensus 66 ~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~----------n~~lc-~~f---~I~~~PT 131 (513)
++.||+|||+||++|++++|.+++++++++ +.+..|+.+.+. ..+.. ..| +|.++||
T Consensus 51 ~~~lvnFWAsWCppCr~e~P~L~~l~~~~~---------~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPT 121 (153)
T TIGR02738 51 DYALVFFYQSTCPYCHQFAPVLKRFSQQFG---------LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPA 121 (153)
T ss_pred CCEEEEEECCCChhHHHHHHHHHHHHHHcC---------CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCe
Confidence 557999999999999999999999999874 334444443211 12333 345 8999999
Q ss_pred EEEecC-CcccCCCCCCccccchhhhccCcCCHHHHHHHHHHh
Q 010286 132 LLWGSP-SKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (513)
Q Consensus 132 l~~f~~-g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~ 173 (513)
++++.+ |.. ....+.|..+.+++.+.|.+.
T Consensus 122 t~LID~~G~~------------i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 122 TFLVNVNTRK------------AYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred EEEEeCCCCE------------EEEEeecccCHHHHHHHHHHh
Confidence 999854 221 123467889999988887764
No 71
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.27 E-value=3.1e-11 Score=102.21 Aligned_cols=89 Identities=20% Similarity=0.279 Sum_probs=73.0
Q ss_pred CCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCC--ccceEEEecCCcccC
Q 010286 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG--HYPMLLWGSPSKFVA 142 (513)
Q Consensus 65 ~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~--~~PTl~~f~~g~~~~ 142 (513)
+++++|.|+++||++|+.+.|.++++|++++ +.+.|+.||+ +++.++++.|+|. ++||+++++..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~-------~~v~f~~vd~--~~~~~~~~~~~i~~~~~P~~~~~~~~~--- 79 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFK-------GKLLFVVVDA--DDFGRHLEYFGLKEEDLPVIAIINLSD--- 79 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhC-------CeEEEEEEch--HhhHHHHHHcCCChhhCCEEEEEeccc---
Confidence 4679999999999999999999999999997 4699999998 4688999999999 999999998721
Q ss_pred CCCCCccccchhhhccCcCCHHHHHHHHHHh
Q 010286 143 GSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (513)
Q Consensus 143 ~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~ 173 (513)
+ ..+....|..+.+.|.+||.+.
T Consensus 80 ~--------~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 80 G--------KKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred c--------cccCCCccccCHHHHHHHHHhh
Confidence 0 1112223446899999999864
No 72
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.26 E-value=3.4e-11 Score=129.13 Aligned_cols=90 Identities=18% Similarity=0.256 Sum_probs=70.1
Q ss_pred CCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEec--------------------------cchhc
Q 010286 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDC--------------------------ALKIN 117 (513)
Q Consensus 64 ~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc--------------------------~~d~n 117 (513)
+++++||+|||+||++|++++|.+++++++++.. .+.|+.|.. ..|.+
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~------~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~ 128 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS------SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNG 128 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC------CeEEEEEecccccccccHHHHHHHHHhCCCcccceecccc
Confidence 4689999999999999999999999999998632 244444422 11346
Q ss_pred HHHHHHCCCCccceEEEe-cCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHH
Q 010286 118 TNLCDKFSVGHYPMLLWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (513)
Q Consensus 118 ~~lc~~f~I~~~PTl~~f-~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~ 172 (513)
..+.+.|+|+++||++++ ++|++ +..+.|..+.++|.++|+.
T Consensus 129 ~~lak~fgV~giPTt~IIDkdGkI-------------V~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 129 GTLAQSLNISVYPSWAIIGKDGDV-------------QRIVKGSISEAQALALIRN 171 (521)
T ss_pred HHHHHHcCCCCcCeEEEEcCCCeE-------------EEEEeCCCCHHHHHHHHHH
Confidence 789999999999999765 55543 3567888999999999873
No 73
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.26 E-value=6.6e-11 Score=111.75 Aligned_cols=89 Identities=12% Similarity=0.087 Sum_probs=65.2
Q ss_pred CCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc---------------------hhcHHHHH
Q 010286 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL---------------------KINTNLCD 122 (513)
Q Consensus 64 ~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~---------------------d~n~~lc~ 122 (513)
++++++|+|||+||++|+++.|.++++++. .+.++.|+.++ |.+..+++
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~----------~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 136 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----------GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGL 136 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc----------CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHH
Confidence 358899999999999999999999988642 15566666422 12234667
Q ss_pred HCCCCccceEEEe-cCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhcc
Q 010286 123 KFSVGHYPMLLWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (513)
Q Consensus 123 ~f~I~~~PTl~~f-~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~ 175 (513)
.|+|.++|+.+++ ++|++ ...+.|..+.+++.++|...+.
T Consensus 137 ~~gv~~~P~t~vid~~G~i-------------~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 137 DLGVYGAPETFLIDGNGII-------------RYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred hcCCCcCCeEEEECCCceE-------------EEEEecCCCHHHHHHHHHHHHH
Confidence 8999999976665 46543 3456788888888888877663
No 74
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.24 E-value=3.9e-11 Score=97.19 Aligned_cols=80 Identities=18% Similarity=0.254 Sum_probs=67.2
Q ss_pred EEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEEecCCcccCCCCCC
Q 010286 68 AVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEP 147 (513)
Q Consensus 68 vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~f~~g~~~~~~~~~ 147 (513)
.+..||++||++|+.+.|.+++++++++ ..+.+..||+ +++.+++++|+|+++||+++ +|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-------~~~~~~~vd~--~~~~~~~~~~~v~~vPt~~~--~g~-------- 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMG-------DAVEVEYINV--MENPQKAMEYGIMAVPAIVI--NGD-------- 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhc-------CceEEEEEeC--ccCHHHHHHcCCccCCEEEE--CCE--------
Confidence 3678999999999999999999999985 3488999997 46789999999999999986 432
Q ss_pred ccccchhhhccCcCCHHHHHHHHHHh
Q 010286 148 NQEKKEIRALEDWQTADGLLTWINKQ 173 (513)
Q Consensus 148 ~~~~~~v~~~~g~~~~e~L~~~i~~~ 173 (513)
..+.|..+.++|.++|++.
T Consensus 63 -------~~~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 63 -------VEFIGAPTKEELVEAIKKR 81 (82)
T ss_pred -------EEEecCCCHHHHHHHHHhh
Confidence 2466888899999988764
No 75
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.18 E-value=7.9e-11 Score=113.89 Aligned_cols=90 Identities=12% Similarity=0.128 Sum_probs=71.7
Q ss_pred CeEEEEEec---CCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEEecCCcccC
Q 010286 66 TYAVVEFFA---NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVA 142 (513)
Q Consensus 66 ~~vLV~FyA---~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~f~~g~~~~ 142 (513)
...++.|++ +|||+|+.+.|.++++++.+. .+.+..+|++.+++++++++|+|.++||+++|++|+..
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--------~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~- 90 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--------KLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDG- 90 (215)
T ss_pred CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--------CceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeee-
Confidence 445778999 999999999999999999884 24444455445679999999999999999999887421
Q ss_pred CCCCCccccchhhhccCcCCHHHHHHHHHHhcc
Q 010286 143 GSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (513)
Q Consensus 143 ~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~ 175 (513)
-.++.|..+.+++.+||+..++
T Consensus 91 -----------~~~~~G~~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 91 -----------GIRYTGIPAGYEFAALIEDIVR 112 (215)
T ss_pred -----------EEEEeecCCHHHHHHHHHHHHH
Confidence 1357788888999999988764
No 76
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.17 E-value=4.5e-11 Score=104.35 Aligned_cols=79 Identities=14% Similarity=0.280 Sum_probs=54.5
Q ss_pred cHHHHHh--cCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCc--cc
Q 010286 55 NFDAVLR--DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGH--YP 130 (513)
Q Consensus 55 ~f~~~l~--~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~--~P 130 (513)
++++.+. ...++++||.|||+||++|+.+.|.+.+.+..... ...++.||.+.+. ..+...|++.+ +|
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-------~~~fv~v~vd~~~-~~~~~~~~~~g~~vP 78 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-------SHNFVMVNLEDDE-EPKDEEFSPDGGYIP 78 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-------cCcEEEEEecCCC-CchhhhcccCCCccc
Confidence 3444443 22368999999999999999999999998775531 1234445543322 24557899986 99
Q ss_pred eEEEec-CCccc
Q 010286 131 MLLWGS-PSKFV 141 (513)
Q Consensus 131 Tl~~f~-~g~~~ 141 (513)
|+++|. +|+..
T Consensus 79 t~~f~~~~Gk~~ 90 (117)
T cd02959 79 RILFLDPSGDVH 90 (117)
T ss_pred eEEEECCCCCCc
Confidence 999995 66543
No 77
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.12 E-value=2.2e-10 Score=125.94 Aligned_cols=103 Identities=14% Similarity=0.361 Sum_probs=80.5
Q ss_pred CcccHHHHHhcC--CCCeEEEEEecCCCHHHhhhhHHH---HHHHHHhCCCCCCCCCeEEEEEEeccch--hcHHHHHHC
Q 010286 52 NATNFDAVLRDT--PATYAVVEFFANWCPACRNYKPQY---EKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKF 124 (513)
Q Consensus 52 ~~~~f~~~l~~~--~~~~vLV~FyA~WCg~Ck~~~P~~---~~lA~~~~~~~~~~~~~v~~~~VDc~~d--~n~~lc~~f 124 (513)
+.+++++.+.+. ++++++|+|||+||++|+.+.|.. .++.+.++ ++.++.+|++++ ++.+++++|
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--------~~~~v~vDvt~~~~~~~~l~~~~ 530 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--------DTVLLQADVTANNAEDVALLKHY 530 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--------CCEEEEEECCCCChhhHHHHHHc
Confidence 457788877542 358999999999999999999875 67777774 277889998642 467899999
Q ss_pred CCCccceEEEec-CCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHh
Q 010286 125 SVGHYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (513)
Q Consensus 125 ~I~~~PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~ 173 (513)
+|.++||+++|+ +|+... ..++.|..+.+++.+++++.
T Consensus 531 ~v~g~Pt~~~~~~~G~~i~-----------~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 531 NVLGLPTILFFDAQGQEIP-----------DARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCCCCCEEEEECCCCCCcc-----------cccccCCCCHHHHHHHHHHh
Confidence 999999999996 443211 24567889999999999864
No 78
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.09 E-value=3.9e-10 Score=100.02 Aligned_cols=74 Identities=18% Similarity=0.359 Sum_probs=57.0
Q ss_pred CCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccch----------------------hcHHHH
Q 010286 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK----------------------INTNLC 121 (513)
Q Consensus 64 ~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d----------------------~n~~lc 121 (513)
+++++||+||++||++|+.+.|.+.++++++.+.. ..+.++.|+.+.+ .+..++
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~----~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESG----KNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLN 92 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcC----CCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHH
Confidence 45889999999999999999999999999986431 2356666665322 125688
Q ss_pred HHCCCCccceEEEec-CCccc
Q 010286 122 DKFSVGHYPMLLWGS-PSKFV 141 (513)
Q Consensus 122 ~~f~I~~~PTl~~f~-~g~~~ 141 (513)
+.|+|.++||++++. +|++.
T Consensus 93 ~~~~v~~~P~~~lid~~G~i~ 113 (131)
T cd03009 93 RTFKIEGIPTLIILDADGEVV 113 (131)
T ss_pred HHcCCCCCCEEEEECCCCCEE
Confidence 999999999999985 55443
No 79
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.08 E-value=6.1e-10 Score=103.98 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=65.7
Q ss_pred CCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc---------------------hhcHHHHHH
Q 010286 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL---------------------KINTNLCDK 123 (513)
Q Consensus 65 ~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~---------------------d~n~~lc~~ 123 (513)
+++++|+||++||++|+++.|.++++++. ++.++.|+.++ |.+..+.+.
T Consensus 63 gk~vll~F~a~wC~~C~~~~p~l~~l~~~----------~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~ 132 (173)
T TIGR00385 63 GKPVLLNVWASWCPPCRAEHPYLNELAKD----------GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLD 132 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHc----------CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHh
Confidence 58899999999999999999999988753 14444444311 234567888
Q ss_pred CCCCccceEEEe-cCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhcc
Q 010286 124 FSVGHYPMLLWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (513)
Q Consensus 124 f~I~~~PTl~~f-~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~ 175 (513)
|+|.++|+.+++ ++|++ +..+.|..+.+++.++|++.+.
T Consensus 133 ~~v~~~P~~~~id~~G~i-------------~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 133 LGVYGAPETFLVDGNGVI-------------LYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred cCCeeCCeEEEEcCCceE-------------EEEEeccCCHHHHHHHHHHHhh
Confidence 999999966665 56643 3456788999999999998763
No 80
>PTZ00062 glutaredoxin; Provisional
Probab=99.08 E-value=4.7e-10 Score=106.86 Aligned_cols=91 Identities=13% Similarity=0.139 Sum_probs=71.7
Q ss_pred CcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccce
Q 010286 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPM 131 (513)
Q Consensus 52 ~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PT 131 (513)
+.+.|++.+.++. +.+++.|+|+||++|+.+.|.+.++++++. .+.|+.||. | |+|.++||
T Consensus 5 ~~ee~~~~i~~~~-g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~--------~~~F~~V~~--d--------~~V~~vPt 65 (204)
T PTZ00062 5 KKEEKDKLIESNT-GKLVLYVKSSKEPEYEQLMDVCNALVEDFP--------SLEFYVVNL--A--------DANNEYGV 65 (204)
T ss_pred CHHHHHHHHhcCC-CcEEEEEeCCCCcchHHHHHHHHHHHHHCC--------CcEEEEEcc--c--------cCcccceE
Confidence 4567777777532 457999999999999999999999999984 499999995 2 99999999
Q ss_pred EEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhcc
Q 010286 132 LLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (513)
Q Consensus 132 l~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~ 175 (513)
+++|.+|+. +.++.| .++..|.+++.++.+
T Consensus 66 fv~~~~g~~-------------i~r~~G-~~~~~~~~~~~~~~~ 95 (204)
T PTZ00062 66 FEFYQNSQL-------------INSLEG-CNTSTLVSFIRGWAQ 95 (204)
T ss_pred EEEEECCEE-------------EeeeeC-CCHHHHHHHHHHHcC
Confidence 999998854 344554 356677777766654
No 81
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.07 E-value=6.2e-10 Score=111.16 Aligned_cols=97 Identities=16% Similarity=0.239 Sum_probs=73.1
Q ss_pred HHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccch---------hcHHHHHHCCCCc
Q 010286 58 AVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK---------INTNLCDKFSVGH 128 (513)
Q Consensus 58 ~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d---------~n~~lc~~f~I~~ 128 (513)
..+.+..++++||.|||+||++|+.++|.++++++++. +.+..|+.+.+ .+..++++|||.+
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg---------~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~ 229 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG---------IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRT 229 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC---------cEEEEEeCCCCccccCCcccCCHHHHHHcCCCc
Confidence 44555556889999999999999999999999999984 44555554321 2467899999999
Q ss_pred cceEEEecC-CcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhcc
Q 010286 129 YPMLLWGSP-SKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (513)
Q Consensus 129 ~PTl~~f~~-g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~ 175 (513)
+||++++.+ |+. ......|..+.++|.+.|.....
T Consensus 230 vPtl~Lv~~~~~~------------v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 230 VPAVFLADPDPNQ------------FTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CCeEEEEECCCCE------------EEEEEeCCCCHHHHHHHHHHHhc
Confidence 999999976 321 11234578899999988876543
No 82
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.07 E-value=1.3e-09 Score=101.52 Aligned_cols=87 Identities=15% Similarity=0.243 Sum_probs=65.0
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccch-----------hcHHHHHHCCC--CccceEEEe
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK-----------INTNLCDKFSV--GHYPMLLWG 135 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d-----------~n~~lc~~f~I--~~~PTl~~f 135 (513)
||.||++||++|+++.|.+++++++++ +.+..|+.+.+ ....+...|++ .++||.+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g---------~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLI 143 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG---------FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLV 143 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC---------CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEE
Confidence 788999999999999999999999984 45555554322 22447778995 699999987
Q ss_pred c-CCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhccc
Q 010286 136 S-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (513)
Q Consensus 136 ~-~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~~ 176 (513)
. +|++. ...+.|..+.++|.+.|.+.+..
T Consensus 144 d~~G~i~------------~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 144 NVNTLEA------------LPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred eCCCcEE------------EEEEECCCCHHHHHHHHHHHHhh
Confidence 4 44221 13578999999999888887643
No 83
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.07 E-value=2.5e-10 Score=98.28 Aligned_cols=90 Identities=17% Similarity=0.293 Sum_probs=61.2
Q ss_pred CCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchh------------------cHHHHHHCC
Q 010286 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI------------------NTNLCDKFS 125 (513)
Q Consensus 64 ~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~------------------n~~lc~~f~ 125 (513)
.+++++|.|+++||++|+.+.+++.+..+....- ...+.++.+++..+. +.++.+.|+
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYL----KDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYG 79 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEE----HCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHh----hcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcC
Confidence 4688999999999999999999998654422110 024677777775332 356999999
Q ss_pred CCccceEEEec-CCcccCCCCCCccccchhhhccCcCCHHHHHHHH
Q 010286 126 VGHYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (513)
Q Consensus 126 I~~~PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i 170 (513)
|+++||++++. +| +.+..+.|..+.++|.+++
T Consensus 80 v~gtPt~~~~d~~G-------------~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 80 VNGTPTIVFLDKDG-------------KIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp --SSSEEEECTTTS-------------CEEEEEESS--HHHHHHHH
T ss_pred CCccCEEEEEcCCC-------------CEEEEecCCCCHHHHHhhC
Confidence 99999999985 44 3345678999999998765
No 84
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.02 E-value=8.7e-10 Score=97.20 Aligned_cols=81 Identities=14% Similarity=0.177 Sum_probs=58.7
Q ss_pred CCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecc---------------------chhcHHHHH
Q 010286 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA---------------------LKINTNLCD 122 (513)
Q Consensus 64 ~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~---------------------~d~n~~lc~ 122 (513)
++++++|+|||+||++|+.+.|.++++++.+. +.++.|+.+ .|.+..+++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~---------~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 94 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR---------VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGI 94 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC---------cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHH
Confidence 35889999999999999999999999987752 445555421 134567899
Q ss_pred HCCCCccceEEEe-cCCcccCCCCCCccccchhhhccCcCCHHHH
Q 010286 123 KFSVGHYPMLLWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGL 166 (513)
Q Consensus 123 ~f~I~~~PTl~~f-~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L 166 (513)
.|+|.++|+.+++ ++|++. ..+.|..+.+.|
T Consensus 95 ~~~v~~~P~~~~ld~~G~v~-------------~~~~G~~~~~~~ 126 (127)
T cd03010 95 DLGVYGVPETFLIDGDGIIR-------------YKHVGPLTPEVW 126 (127)
T ss_pred hcCCCCCCeEEEECCCceEE-------------EEEeccCChHhc
Confidence 9999999966555 566432 445676665543
No 85
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.02 E-value=1.1e-09 Score=98.94 Aligned_cols=79 Identities=14% Similarity=0.160 Sum_probs=57.7
Q ss_pred cCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCC-CCCCeEEEEEEeccchh-----------------------c
Q 010286 62 DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNA-AHPGIILMTRVDCALKI-----------------------N 117 (513)
Q Consensus 62 ~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~-~~~~~v~~~~VDc~~d~-----------------------n 117 (513)
+.++++++|+|||+||++|+++.|.++++++++++... .....+.++.|+.+.+. .
T Consensus 22 ~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~ 101 (146)
T cd03008 22 RLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFR 101 (146)
T ss_pred HhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHH
Confidence 33468999999999999999999999999988764210 00124777777754211 2
Q ss_pred HHHHHHCCCCccceEEEec-CCcc
Q 010286 118 TNLCDKFSVGHYPMLLWGS-PSKF 140 (513)
Q Consensus 118 ~~lc~~f~I~~~PTl~~f~-~g~~ 140 (513)
..+++.|+|.++||++++. +|++
T Consensus 102 ~~l~~~y~v~~iPt~vlId~~G~V 125 (146)
T cd03008 102 RELEAQFSVEELPTVVVLKPDGDV 125 (146)
T ss_pred HHHHHHcCCCCCCEEEEECCCCcE
Confidence 3688899999999999885 4543
No 86
>PHA02125 thioredoxin-like protein
Probab=99.01 E-value=1e-09 Score=87.98 Aligned_cols=50 Identities=28% Similarity=0.533 Sum_probs=43.1
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEE
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLL 133 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~ 133 (513)
+|.|||+|||+|+.+.|.+++++ +.++.||+ +++.+++++|+|+++||++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------------~~~~~vd~--~~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------------YTYVDVDT--DEGVELTAKHHIRSLPTLV 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------------heEEeeeC--CCCHHHHHHcCCceeCeEE
Confidence 78999999999999999997642 34677886 5688999999999999997
No 87
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.01 E-value=1.3e-09 Score=97.08 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=57.1
Q ss_pred CCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchh-----------------------cHH
Q 010286 63 TPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI-----------------------NTN 119 (513)
Q Consensus 63 ~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~-----------------------n~~ 119 (513)
.+++++||.|||+||++|+.+.|.++++++.+++.. ..+.+..|+++.+. ...
T Consensus 15 ~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~----~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 90 (132)
T cd02964 15 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEG----KNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELREL 90 (132)
T ss_pred hCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcC----CCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHH
Confidence 346889999999999999999999999999987431 24666666654321 235
Q ss_pred HHHHCCCCccceEEEec-CCccc
Q 010286 120 LCDKFSVGHYPMLLWGS-PSKFV 141 (513)
Q Consensus 120 lc~~f~I~~~PTl~~f~-~g~~~ 141 (513)
+.+.|+|.++||++++. +|++.
T Consensus 91 ~~~~~~v~~iPt~~lid~~G~iv 113 (132)
T cd02964 91 LEKQFKVEGIPTLVVLKPDGDVV 113 (132)
T ss_pred HHHHcCCCCCCEEEEECCCCCEE
Confidence 77789999999999885 55443
No 88
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.01 E-value=1.2e-09 Score=87.78 Aligned_cols=54 Identities=13% Similarity=0.160 Sum_probs=46.3
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEE
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~ 134 (513)
-|+||++|||+|+.+.|.++++++++. ..+.+..|| +.+.+.+|+|.++||+++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~-------~~~~~~~v~-----~~~~a~~~~v~~vPti~i 55 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELG-------IDAEFEKVT-----DMNEILEAGVTATPGVAV 55 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcC-------CCeEEEEeC-----CHHHHHHcCCCcCCEEEE
Confidence 389999999999999999999999985 347787777 244578899999999998
No 89
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.00 E-value=1.6e-09 Score=104.74 Aligned_cols=81 Identities=19% Similarity=0.244 Sum_probs=66.7
Q ss_pred CeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEEecCCcccCCCC
Q 010286 66 TYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSW 145 (513)
Q Consensus 66 ~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~f~~g~~~~~~~ 145 (513)
..+++.||++||++|+.+.|.+++++... +.+.+..||. +++++++++|+|.++||++++..|+
T Consensus 134 pv~I~~F~a~~C~~C~~~~~~l~~l~~~~--------~~i~~~~vD~--~~~~~~~~~~~V~~vPtl~i~~~~~------ 197 (215)
T TIGR02187 134 PVRIEVFVTPTCPYCPYAVLMAHKFALAN--------DKILGEMIEA--NENPDLAEKYGVMSVPKIVINKGVE------ 197 (215)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHhc--------CceEEEEEeC--CCCHHHHHHhCCccCCEEEEecCCE------
Confidence 34556699999999999999999998874 2488889996 5689999999999999999976542
Q ss_pred CCccccchhhhccCcCCHHHHHHHHHH
Q 010286 146 EPNQEKKEIRALEDWQTADGLLTWINK 172 (513)
Q Consensus 146 ~~~~~~~~v~~~~g~~~~e~L~~~i~~ 172 (513)
.+.|..+.++|.++|.+
T Consensus 198 ----------~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 198 ----------EFVGAYPEEQFLEYILS 214 (215)
T ss_pred ----------EEECCCCHHHHHHHHHh
Confidence 16677888899988864
No 90
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.00 E-value=2.2e-09 Score=89.54 Aligned_cols=68 Identities=21% Similarity=0.494 Sum_probs=54.2
Q ss_pred CCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccch-----------------------hcHHHH
Q 010286 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK-----------------------INTNLC 121 (513)
Q Consensus 65 ~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d-----------------------~n~~lc 121 (513)
+++++|.|||+||++|+++.|.++++.+.+++ + +.+.++.|+++.+ .+..+.
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~----~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 75 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-K----DDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELL 75 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-T----TTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-C----CCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHH
Confidence 47899999999999999999999999999984 2 4588888887532 235688
Q ss_pred HHCCCCccceEEEecC
Q 010286 122 DKFSVGHYPMLLWGSP 137 (513)
Q Consensus 122 ~~f~I~~~PTl~~f~~ 137 (513)
+.|+|.++|+++++.+
T Consensus 76 ~~~~i~~iP~~~lld~ 91 (95)
T PF13905_consen 76 KKYGINGIPTLVLLDP 91 (95)
T ss_dssp HHTT-TSSSEEEEEET
T ss_pred HHCCCCcCCEEEEECC
Confidence 8999999999998754
No 91
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.91 E-value=4.8e-09 Score=91.67 Aligned_cols=96 Identities=19% Similarity=0.379 Sum_probs=67.3
Q ss_pred eecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecc---------------
Q 010286 49 VELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA--------------- 113 (513)
Q Consensus 49 ~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~--------------- 113 (513)
..++++.+...... +++++|.||++||++|+.+.|.+.++++.+. .+.+. +|-.
T Consensus 6 ~~~~g~~~~~~~~~--~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--------~i~i~-~~~~~~~~~~~~~~~~~~~ 74 (123)
T cd03011 6 TTLDGEQFDLESLS--GKPVLVYFWATWCPVCRFTSPTVNQLAADYP--------VVSVA-LRSGDDGAVARFMQKKGYG 74 (123)
T ss_pred ecCCCCEeeHHHhC--CCEEEEEEECCcChhhhhhChHHHHHHhhCC--------EEEEE-ccCCCHHHHHHHHHHcCCC
Confidence 34555555544433 4789999999999999999999999988753 12222 2210
Q ss_pred ----chhcHHHHHHCCCCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHH
Q 010286 114 ----LKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLT 168 (513)
Q Consensus 114 ----~d~n~~lc~~f~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~ 168 (513)
.+.+.++++.|+|.++||++++.++.+ ...+.|..+.++|.+
T Consensus 75 ~~~~~d~~~~~~~~~~i~~~P~~~vid~~gi-------------~~~~~g~~~~~~~~~ 120 (123)
T cd03011 75 FPVINDPDGVISARWGVSVTPAIVIVDPGGI-------------VFVTTGVTSEWGLRL 120 (123)
T ss_pred ccEEECCCcHHHHhCCCCcccEEEEEcCCCe-------------EEEEeccCCHHHHHh
Confidence 134568999999999999999876532 234567777777754
No 92
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.87 E-value=5.4e-09 Score=81.49 Aligned_cols=56 Identities=21% Similarity=0.354 Sum_probs=49.4
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEE
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~ 134 (513)
++.|+++||++|+.+.|.+++++... +.+.+..+|. +++++++++|+|.++||+++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~--------~~i~~~~id~--~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALN--------PNISAEMIDA--AEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhC--------CceEEEEEEc--ccCHhHHHHcCCcccCEEEE
Confidence 78899999999999999999998764 2488999997 45788999999999999976
No 93
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.85 E-value=1.2e-08 Score=89.77 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=56.8
Q ss_pred cccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHH-H--HHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHH-------
Q 010286 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQ-Y--EKVARLFNGPNAAHPGIILMTRVDCALKINTNLCD------- 122 (513)
Q Consensus 53 ~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~-~--~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~------- 122 (513)
++.++.+..+ ++++||.|||+||+.|+.|.++ | .++++.++ ..+.++.||.+ +++++.+
T Consensus 5 ~eal~~Ak~~--~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~-------~~fv~VkvD~~--~~~~~~~~~~~~~~ 73 (124)
T cd02955 5 EEAFEKARRE--DKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN-------ENFVPIKVDRE--ERPDVDKIYMNAAQ 73 (124)
T ss_pred HHHHHHHHHc--CCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh-------CCEEEEEEeCC--cCcHHHHHHHHHHH
Confidence 4455555555 5899999999999999999873 4 35666664 24788899974 4566654
Q ss_pred -HCCCCccceEEEec-CCccc
Q 010286 123 -KFSVGHYPMLLWGS-PSKFV 141 (513)
Q Consensus 123 -~f~I~~~PTl~~f~-~g~~~ 141 (513)
.|++.++||++++. +|+..
T Consensus 74 ~~~~~~G~Pt~vfl~~~G~~~ 94 (124)
T cd02955 74 AMTGQGGWPLNVFLTPDLKPF 94 (124)
T ss_pred HhcCCCCCCEEEEECCCCCEE
Confidence 36999999999985 45443
No 94
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.79 E-value=1.9e-08 Score=117.88 Aligned_cols=93 Identities=14% Similarity=0.245 Sum_probs=73.0
Q ss_pred CCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEec---cc----------------------hhcH
Q 010286 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDC---AL----------------------KINT 118 (513)
Q Consensus 64 ~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc---~~----------------------d~n~ 118 (513)
+++++||+|||+||++|+.+.|.+++++++|++. .+.|+.|.+ +. |.+.
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~------~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~ 492 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ------PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDM 492 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC------CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCch
Confidence 4689999999999999999999999999999742 366666632 11 2345
Q ss_pred HHHHHCCCCccceEEEe-cCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhcc
Q 010286 119 NLCDKFSVGHYPMLLWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (513)
Q Consensus 119 ~lc~~f~I~~~PTl~~f-~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~ 175 (513)
.+.++|+|.++||++++ ++|++ +..+.|....+.|.++|++.+.
T Consensus 493 ~~~~~~~V~~iPt~ilid~~G~i-------------v~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 493 YLWRELGVSSWPTFAVVSPNGKL-------------IAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred HHHHhcCCCccceEEEECCCCeE-------------EEEEecccCHHHHHHHHHHHHH
Confidence 68889999999999999 56643 3456788888999999987653
No 95
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.78 E-value=4.4e-08 Score=84.94 Aligned_cols=103 Identities=12% Similarity=0.185 Sum_probs=78.6
Q ss_pred ccHHHHHhc--CCCCeEEEEEecCCCHHHhhhhHH-H--HHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCc
Q 010286 54 TNFDAVLRD--TPATYAVVEFFANWCPACRNYKPQ-Y--EKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGH 128 (513)
Q Consensus 54 ~~f~~~l~~--~~~~~vLV~FyA~WCg~Ck~~~P~-~--~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~ 128 (513)
.+|++++.. ..+++++|+|+++||+.|+.|... | +++.+.++ ....+..+|.+..+..++++.|++.+
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~-------~~~v~~~~d~~~~e~~~~~~~~~~~~ 76 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR-------ENFIFWQCDIDSSEGQRFLQSYKVDK 76 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH-------hCEEEEEecCCCccHHHHHHHhCccC
Confidence 356665532 236899999999999999999764 4 45666665 24777888987657788999999999
Q ss_pred cceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhc
Q 010286 129 YPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (513)
Q Consensus 129 ~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l 174 (513)
+|++.++.+. + +..+..+.|..+.+++...+++.+
T Consensus 77 ~P~~~~i~~~---~--------g~~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 77 YPHIAIIDPR---T--------GEVLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred CCeEEEEeCc---c--------CcEeEEEcCCCCHHHHHHHHHHHH
Confidence 9999998651 0 144567889999999999888764
No 96
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.77 E-value=3.7e-08 Score=92.32 Aligned_cols=88 Identities=10% Similarity=-0.011 Sum_probs=57.4
Q ss_pred CCCCeEEEEEecCCCHHHhhhhHHHHHHHHH-hCCCCCCCCCeEEEEEEeccc---------------------------
Q 010286 63 TPATYAVVEFFANWCPACRNYKPQYEKVARL-FNGPNAAHPGIILMTRVDCAL--------------------------- 114 (513)
Q Consensus 63 ~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~-~~~~~~~~~~~v~~~~VDc~~--------------------------- 114 (513)
..+++.||+|||+||++|+..+|.++++++. +.-.. + =....||.++
T Consensus 57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~--y---~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vll 131 (184)
T TIGR01626 57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVK--Y---QTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVL 131 (184)
T ss_pred cCCCEEEEEEEecCCChhhccchHHHHHHHcCCCccc--c---cceEEEECccchhhHHHHHHHHHHHhcccCCcceEEE
Confidence 3478999999999999999999999999653 21000 0 0013334321
Q ss_pred hhcHHHHHHCCCCccceE-EEe-cCCcccCCCCCCccccchhhhccCcCCHHHHHH
Q 010286 115 KINTNLCDKFSVGHYPML-LWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLT 168 (513)
Q Consensus 115 d~n~~lc~~f~I~~~PTl-~~f-~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~ 168 (513)
|.+..+...|+|.++|+. +++ ++|+ .+..+.|..+.+++.+
T Consensus 132 D~~g~v~~~~gv~~~P~T~fVIDk~Gk-------------Vv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 132 DDKGAVKNAWQLNSEDSAIIVLDKTGK-------------VKFVKEGALSDSDIQT 174 (184)
T ss_pred CCcchHHHhcCCCCCCceEEEECCCCc-------------EEEEEeCCCCHHHHHH
Confidence 123456778999999866 444 4443 3356678888877766
No 97
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.76 E-value=1.9e-08 Score=86.68 Aligned_cols=62 Identities=18% Similarity=0.349 Sum_probs=46.7
Q ss_pred CCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEE-eccchhcHHHHHHCCCCccceEE
Q 010286 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRV-DCALKINTNLCDKFSVGHYPMLL 133 (513)
Q Consensus 65 ~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~V-Dc~~d~n~~lc~~f~I~~~PTl~ 133 (513)
+++++|.||++||++|+.+.|.++++++.+.+ .+.++.+ |.+.++..++++++++..+|++.
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-------~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-------WLDVVLASDGEKAEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-------CcEEEEEeCCCHHHHHHHHHHhCCCCCcEEe
Confidence 57899999999999999999999999888752 2433333 33334556678888887788753
No 98
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.76 E-value=2.3e-09 Score=101.48 Aligned_cols=102 Identities=21% Similarity=0.442 Sum_probs=87.8
Q ss_pred CcceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCC
Q 010286 46 DHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFS 125 (513)
Q Consensus 46 ~~v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~ 125 (513)
..++.++.+|+...+.. . ++++|+||||+.|+...|+|+.+|.--.+ -.|.++.||++ .|+-|.-+|-
T Consensus 24 s~~~~~~eenw~~~l~g---e-wmi~~~ap~~psc~~~~~~~~~~a~~s~d------L~v~va~VDvt--~npgLsGRF~ 91 (248)
T KOG0913|consen 24 SKLTRIDEENWKELLTG---E-WMIEFGAPWCPSCSDLIPHLENFATVSLD------LGVKVAKVDVT--TNPGLSGRFL 91 (248)
T ss_pred ceeEEecccchhhhhch---H-HHHHhcCCCCccccchHHHHhccCCccCC------CceeEEEEEEE--eccccceeeE
Confidence 36889999999998876 3 59999999999999999999998765433 24899999986 5899999999
Q ss_pred CCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHh
Q 010286 126 VGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (513)
Q Consensus 126 I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~ 173 (513)
|...|||+..++|.+ .+|.|.|+..+++.|+..+
T Consensus 92 vtaLptIYHvkDGeF--------------rrysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 92 VTALPTIYHVKDGEF--------------RRYSGARDKNDFISFEEHR 125 (248)
T ss_pred EEecceEEEeecccc--------------ccccCcccchhHHHHHHhh
Confidence 999999999888755 4689999999999999754
No 99
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.74 E-value=8.3e-08 Score=102.52 Aligned_cols=107 Identities=20% Similarity=0.342 Sum_probs=81.0
Q ss_pred eecCcc-cHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHH-HHHHHhCCCCCCCCCeEEEEEEeccc--hhcHHHHHHC
Q 010286 49 VELNAT-NFDAVLRDTPATYAVVEFFANWCPACRNYKPQYE-KVARLFNGPNAAHPGIILMTRVDCAL--KINTNLCDKF 124 (513)
Q Consensus 49 ~~L~~~-~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~-~lA~~~~~~~~~~~~~v~~~~VDc~~--d~n~~lc~~f 124 (513)
..++.. ..++.+.+.++++|+|+|||+||-.||.+.+..- +.....+- .+++..++|.|. .++.++-++|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~------~~~vlLqaDvT~~~p~~~~lLk~~ 530 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL------QDVVLLQADVTANDPAITALLKRL 530 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc------CCeEEEEeeecCCCHHHHHHHHHc
Confidence 445554 8899999988789999999999999999988542 33222221 348899999974 3456788999
Q ss_pred CCCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHh
Q 010286 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (513)
Q Consensus 125 ~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~ 173 (513)
++-+.|++++|+++- ++...+.|..+++.+.+++++.
T Consensus 531 ~~~G~P~~~ff~~~g------------~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 531 GVFGVPTYLFFGPQG------------SEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCCCCEEEEECCCC------------CcCcCCcceecHHHHHHHHHHh
Confidence 999999999998431 2223378889999999999764
No 100
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.73 E-value=4e-08 Score=86.66 Aligned_cols=71 Identities=10% Similarity=0.234 Sum_probs=55.3
Q ss_pred CCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecc-------------------------chhcH
Q 010286 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA-------------------------LKINT 118 (513)
Q Consensus 64 ~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~-------------------------~d~n~ 118 (513)
+++++||+||++||++|+...|.++++++++++. .+.++.|+.. .|.+.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~------~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~ 95 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD------GLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDY 95 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC------CeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCch
Confidence 3588999999999999999999999999999752 3777777541 02245
Q ss_pred HHHHHCCCCccceEEEec-CCcc
Q 010286 119 NLCDKFSVGHYPMLLWGS-PSKF 140 (513)
Q Consensus 119 ~lc~~f~I~~~PTl~~f~-~g~~ 140 (513)
.+.+.|++.++|+.+++. +|++
T Consensus 96 ~~~~~~~v~~~P~~~vid~~G~v 118 (126)
T cd03012 96 ATWRAYGNQYWPALYLIDPTGNV 118 (126)
T ss_pred HHHHHhCCCcCCeEEEECCCCcE
Confidence 677889999999988884 4543
No 101
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=3.1e-08 Score=92.57 Aligned_cols=90 Identities=23% Similarity=0.443 Sum_probs=75.8
Q ss_pred ccCcceec-CcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHH
Q 010286 44 EVDHAVEL-NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCD 122 (513)
Q Consensus 44 ~~~~v~~L-~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~ 122 (513)
.+..+..+ +.+.+++.+..++.+.++|+|||.|-+.|++++|.|.+|+.+|+. +.++|++||.. ..++.+.
T Consensus 122 gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~------~~lkFGkvDiG--rfpd~a~ 193 (265)
T KOG0914|consen 122 GPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN------NLLKFGKVDIG--RFPDVAA 193 (265)
T ss_pred CchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCC------CCCcccceeec--cCcChHH
Confidence 34567777 667777778777778899999999999999999999999999975 46999999984 6788999
Q ss_pred HCCCC------ccceEEEecCCccc
Q 010286 123 KFSVG------HYPMLLWGSPSKFV 141 (513)
Q Consensus 123 ~f~I~------~~PTl~~f~~g~~~ 141 (513)
+|+|. ..||+++|..|+..
T Consensus 194 kfris~s~~srQLPT~ilFq~gkE~ 218 (265)
T KOG0914|consen 194 KFRISLSPGSRQLPTYILFQKGKEV 218 (265)
T ss_pred heeeccCcccccCCeEEEEccchhh
Confidence 99875 68999999988643
No 102
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.71 E-value=5.6e-08 Score=82.36 Aligned_cols=68 Identities=22% Similarity=0.487 Sum_probs=57.0
Q ss_pred CCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccch---------------------hcHHHHHH
Q 010286 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK---------------------INTNLCDK 123 (513)
Q Consensus 65 ~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d---------------------~n~~lc~~ 123 (513)
+++++|.||++||++|+.+.|.+.++.+.+.+ ..+.++.|+++.+ .+..+.+.
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~------~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKD------DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKA 92 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCC------CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHh
Confidence 57899999999999999999999999999863 3488999998531 12678999
Q ss_pred CCCCccceEEEec-CC
Q 010286 124 FSVGHYPMLLWGS-PS 138 (513)
Q Consensus 124 f~I~~~PTl~~f~-~g 138 (513)
|++.++|+++++. +|
T Consensus 93 ~~~~~~P~~~l~d~~g 108 (116)
T cd02966 93 YGVRGLPTTFLIDRDG 108 (116)
T ss_pred cCcCccceEEEECCCC
Confidence 9999999998885 44
No 103
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.66 E-value=2.6e-07 Score=87.55 Aligned_cols=70 Identities=21% Similarity=0.342 Sum_probs=49.2
Q ss_pred CCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc----------------hhcHHHHHHCCCC
Q 010286 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL----------------KINTNLCDKFSVG 127 (513)
Q Consensus 64 ~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~----------------d~n~~lc~~f~I~ 127 (513)
++++++|+||++||++|+.+.|.+.++.+... ..+.++..|-.. ..+.++.+.|+|.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~-------~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~ 145 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE-------TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVG 145 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC-------CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCC
Confidence 45789999999999999999999999887642 123333322000 0135678899999
Q ss_pred ccceEEEe-cCCcc
Q 010286 128 HYPMLLWG-SPSKF 140 (513)
Q Consensus 128 ~~PTl~~f-~~g~~ 140 (513)
++|+.+++ ++|++
T Consensus 146 ~~P~~~lID~~G~I 159 (189)
T TIGR02661 146 KIPYGVLLDQDGKI 159 (189)
T ss_pred ccceEEEECCCCeE
Confidence 99987775 45544
No 104
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.65 E-value=2e-07 Score=82.38 Aligned_cols=105 Identities=14% Similarity=0.173 Sum_probs=85.0
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCC---CHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHC
Q 010286 48 AVELNATNFDAVLRDTPATYAVVEFFANW---CPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (513)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vLV~FyA~W---Cg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f 124 (513)
...++..+++..+.... ..|.|.+.- ++-+-..+=.+++++++|.+ +.+.+++||+ |++++++.+|
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~vl~~~gdp~r~~E~~D~avvleELa~e~~~------~~v~~akVDi--D~~~~LA~~f 87 (132)
T PRK11509 19 WTPVSESRLDDWLTQAP---DGVVLLSSDPKRTPEVSDNPVMIGELLREFPD------YTWQVAIADL--EQSEAIGDRF 87 (132)
T ss_pred CCccccccHHHHHhCCC---cEEEEeCCCCCcCCccccHHHHHHHHHHHhcC------CceEEEEEEC--CCCHHHHHHc
Confidence 34567788998887642 355666644 67788888899999999963 3499999997 5789999999
Q ss_pred CCCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhccc
Q 010286 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (513)
Q Consensus 125 ~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~~ 176 (513)
||+++||+++|++|+.. ..+.|.++.+++.++|++.+..
T Consensus 88 gV~siPTLl~FkdGk~v-------------~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 88 GVFRFPATLVFTGGNYR-------------GVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred CCccCCEEEEEECCEEE-------------EEEeCcCCHHHHHHHHHHHhcC
Confidence 99999999999998543 5678899999999999998864
No 105
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.65 E-value=1.1e-07 Score=90.89 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=48.5
Q ss_pred CCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc---------hhcHHHHHHCCCCccceE
Q 010286 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL---------KINTNLCDKFSVGHYPML 132 (513)
Q Consensus 64 ~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~---------d~n~~lc~~f~I~~~PTl 132 (513)
+++++||.|||+||++|+...|.++++++.+.+ ..+.|+.|+|++ ++-...++++++. ||.+
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~------~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~-fpvl 108 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP------LGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIK-YNFF 108 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc------CceEEEEecchhccCCCCCCHHHHHHHHHHcCCC-ceee
Confidence 468999999999999999999999999999974 248889998731 2345567777763 5643
No 106
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.63 E-value=2.1e-07 Score=77.17 Aligned_cols=65 Identities=12% Similarity=0.173 Sum_probs=54.0
Q ss_pred HhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEE
Q 010286 60 LRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 60 l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~ 134 (513)
+.+-.+...+..|+++||++|+...+.++++++.+. ++.+..+|. ++..+++.+|+|.++||+++
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~--------~i~~~~vd~--~~~~e~a~~~~V~~vPt~vi 71 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP--------NIEHEMIDG--ALFQDEVEERGIMSVPAIFL 71 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC--------CceEEEEEh--HhCHHHHHHcCCccCCEEEE
Confidence 333333456888999999999999999999998763 488999996 46789999999999999975
No 107
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.59 E-value=2.3e-07 Score=90.61 Aligned_cols=105 Identities=10% Similarity=0.134 Sum_probs=66.8
Q ss_pred CCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc------h---hcHHHH-HHCCCCccceEE
Q 010286 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL------K---INTNLC-DKFSVGHYPMLL 133 (513)
Q Consensus 64 ~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~------d---~n~~lc-~~f~I~~~PTl~ 133 (513)
.++++||.|||+||++|+...|.++++++++++. .+.++.|+|++ + +..+.+ +++++. ||.+.
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~------Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~-fPvl~ 170 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ------GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAE-FPIFD 170 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC------CcEEEEEecccccccCCCCHHHHHHHHHHhcCCC-Ccccc
Confidence 4588999999999999999999999999999753 38888898741 1 123333 456654 55421
Q ss_pred Eec-CCccc----------CCC-------CCC-----ccccchhhhccCcCCHHHHHHHHHHhcc
Q 010286 134 WGS-PSKFV----------AGS-------WEP-----NQEKKEIRALEDWQTADGLLTWINKQTS 175 (513)
Q Consensus 134 ~f~-~g~~~----------~~~-------~~~-----~~~~~~v~~~~g~~~~e~L~~~i~~~l~ 175 (513)
-.. +|... .++ +.| ..++..+..+.|..+.++|.+.|++.+.
T Consensus 171 ~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 171 KVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred ccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 111 11100 000 000 0123455677888899999998887763
No 108
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.54 E-value=2e-07 Score=75.86 Aligned_cols=63 Identities=25% Similarity=0.590 Sum_probs=46.1
Q ss_pred CCeEEEEEecCCCHHHhhhhHHH---HHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEEecC
Q 010286 65 ATYAVVEFFANWCPACRNYKPQY---EKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSP 137 (513)
Q Consensus 65 ~~~vLV~FyA~WCg~Ck~~~P~~---~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~f~~ 137 (513)
++++||+|+|+||++|+.+...+ .++.+.+. .++.++.||.+. .+... ++..+++|+++++.+
T Consensus 17 ~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~-------~~fv~v~vd~~~-~~~~~--~~~~~~~P~~~~ldp 82 (82)
T PF13899_consen 17 GKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN-------KNFVLVKVDVDD-EDPNA--QFDRQGYPTFFFLDP 82 (82)
T ss_dssp TSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH-------HCSEEEEEETTT-HHHHH--HHHHCSSSEEEEEET
T ss_pred CCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH-------CCEEEEEEEcCC-CChhH--HhCCccCCEEEEeCC
Confidence 58999999999999999999877 45555454 347889999853 33333 222277999998753
No 109
>smart00594 UAS UAS domain.
Probab=98.53 E-value=4.9e-07 Score=79.44 Aligned_cols=105 Identities=11% Similarity=0.193 Sum_probs=76.8
Q ss_pred CcccHHHHHhcC--CCCeEEEEEecCCCHHHhhhhHH-H--HHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCC
Q 010286 52 NATNFDAVLRDT--PATYAVVEFFANWCPACRNYKPQ-Y--EKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (513)
Q Consensus 52 ~~~~f~~~l~~~--~~~~vLV~FyA~WCg~Ck~~~P~-~--~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I 126 (513)
-..+|++++... .+|+++|+|+++||+.|+.|.-. | .++.+.++ ..+.+..+|.+..+..+++..|++
T Consensus 12 ~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~-------~~fv~~~~dv~~~eg~~l~~~~~~ 84 (122)
T smart00594 12 YQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR-------ENFIFWQVDVDTSEGQRVSQFYKL 84 (122)
T ss_pred eeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH-------cCEEEEEecCCChhHHHHHHhcCc
Confidence 345677766432 35789999999999999998864 3 34555664 247888899887888999999999
Q ss_pred CccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHH
Q 010286 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (513)
Q Consensus 127 ~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i 170 (513)
+++|++.++.+..-. .....+..+.|..+.++|+.++
T Consensus 85 ~~~P~~~~l~~~~g~-------~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 85 DSFPYVAIVDPRTGQ-------RVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CCCCEEEEEecCCCc-------eeEEEeccccCCCCHHHHHHhh
Confidence 999999998542100 0013456678999999998875
No 110
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.51 E-value=3.7e-07 Score=82.35 Aligned_cols=83 Identities=23% Similarity=0.404 Sum_probs=60.0
Q ss_pred cCcccHHHHHhcCCCCeEEEEEecC-CCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc---------------
Q 010286 51 LNATNFDAVLRDTPATYAVVEFFAN-WCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL--------------- 114 (513)
Q Consensus 51 L~~~~f~~~l~~~~~~~vLV~FyA~-WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~--------------- 114 (513)
++.+.+. +.+.++++++|.||++ |||+|+...|.++++++.+++. .+.++.|....
T Consensus 16 ~~g~~~~--l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~------~v~~v~v~~~~~~~~~~~~~~~~~~~ 87 (146)
T PF08534_consen 16 LDGKPVS--LSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK------GVDVVGVSSDDDPPVREFLKKYGINF 87 (146)
T ss_dssp TTSEEEE--GGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT------TCEEEEEEESSSHHHHHHHHHTTTTS
T ss_pred CCCCEec--HHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC------ceEEEEecccCCHHHHHHHHhhCCCc
Confidence 4444443 3334468899999999 9999999999999999998753 25565555432
Q ss_pred ----hhcHHHHHHCCCC---------ccceEEEe-cCCccc
Q 010286 115 ----KINTNLCDKFSVG---------HYPMLLWG-SPSKFV 141 (513)
Q Consensus 115 ----d~n~~lc~~f~I~---------~~PTl~~f-~~g~~~ 141 (513)
|.+..+.++|++. ++|+++++ ++|++.
T Consensus 88 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~ 128 (146)
T PF08534_consen 88 PVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVV 128 (146)
T ss_dssp EEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEE
T ss_pred eEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEE
Confidence 2345788899998 99987776 555543
No 111
>PLN02412 probable glutathione peroxidase
Probab=98.45 E-value=7.7e-07 Score=82.64 Aligned_cols=105 Identities=10% Similarity=0.111 Sum_probs=69.0
Q ss_pred CCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc------hhcHH----HHHHCCCCccceEE
Q 010286 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL------KINTN----LCDKFSVGHYPMLL 133 (513)
Q Consensus 64 ~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~------d~n~~----lc~~f~I~~~PTl~ 133 (513)
.++++||.|||+||++|+...|.++++.++|++. .+.++.|+++. +...+ .++++++. ||.+.
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~------g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~-fpvl~ 100 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ------GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAE-FPIFD 100 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC------CcEEEEecccccccCCCCCHHHHHHHHHHccCCC-CceEe
Confidence 4588999999999999999999999999999853 48888998742 12222 25667775 77764
Q ss_pred Ee-cCC-cccC--------------CCC--CC-----ccccchhhhccCcCCHHHHHHHHHHhcc
Q 010286 134 WG-SPS-KFVA--------------GSW--EP-----NQEKKEIRALEDWQTADGLLTWINKQTS 175 (513)
Q Consensus 134 ~f-~~g-~~~~--------------~~~--~~-----~~~~~~v~~~~g~~~~e~L~~~i~~~l~ 175 (513)
-+ .+| .... .+. .| ..++..+..+.|..+.++|.+.|++.+.
T Consensus 101 ~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 101 KVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred EEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 22 222 1100 000 01 0123445566788888899888887664
No 112
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.39 E-value=9.9e-07 Score=80.46 Aligned_cols=61 Identities=13% Similarity=0.300 Sum_probs=45.6
Q ss_pred CCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc---------hhcHHHHHH-CCCCccceE
Q 010286 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL---------KINTNLCDK-FSVGHYPML 132 (513)
Q Consensus 64 ~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~---------d~n~~lc~~-f~I~~~PTl 132 (513)
+++++||.|||+||+ |+...|.++++++++++. .+.++.|+++. ++-.+.+++ +++. ||.+
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~------~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~-fp~~ 91 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR------GLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVT-FPMF 91 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC------CEEEEEeccCccccCCCCCHHHHHHHHHHhcCCC-ceee
Confidence 458899999999999 999999999999999742 48888887632 223445554 5653 6654
No 113
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.38 E-value=2.1e-06 Score=78.34 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=38.6
Q ss_pred CCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEec
Q 010286 63 TPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDC 112 (513)
Q Consensus 63 ~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc 112 (513)
.+++++||.|||+||++|+...|.+.++++++++ ..+.+..|+|
T Consensus 20 ~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~------~~~~v~~i~~ 63 (153)
T TIGR02540 20 YRGKVSLVVNVASECGFTDQNYRALQELHRELGP------SHFNVLAFPC 63 (153)
T ss_pred hCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh------CCeEEEEEec
Confidence 3468889999999999999999999999999974 2488999987
No 114
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.29 E-value=3.8e-06 Score=70.45 Aligned_cols=66 Identities=30% Similarity=0.599 Sum_probs=56.5
Q ss_pred CCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCC--CCccceEEEecCC
Q 010286 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFS--VGHYPMLLWGSPS 138 (513)
Q Consensus 65 ~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~--I~~~PTl~~f~~g 138 (513)
+++++|.||++||++|+.+.|.+.++++.+.. .+.+..+|.. +.+.++...|+ +..+|++.++.++
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-------~~~~~~i~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~ 99 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-------DVEVVAVNVD-DENPDLAAEFGVAVRSIPTLLLFKDG 99 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-------CcEEEEEECC-CCChHHHHHHhhhhccCCeEEEEeCc
Confidence 46789999999999999999999999999862 4788888874 25788999999 9999999887665
No 115
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.26 E-value=6.7e-06 Score=76.40 Aligned_cols=101 Identities=12% Similarity=0.166 Sum_probs=70.4
Q ss_pred CCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc---------------------------hhc
Q 010286 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL---------------------------KIN 117 (513)
Q Consensus 65 ~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~---------------------------d~n 117 (513)
++++||.||++||++|....|.+.++.+++.+. .+.++.|.++. +.+
T Consensus 25 ~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~------~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~ 98 (171)
T cd02969 25 GKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK------GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDET 98 (171)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC------CeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCc
Confidence 478999999999999999999999999999742 47888887642 123
Q ss_pred HHHHHHCCCCccceEEEec-CCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhcc
Q 010286 118 TNLCDKFSVGHYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (513)
Q Consensus 118 ~~lc~~f~I~~~PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~ 175 (513)
..+++.|+|...|+++++. +|++...+... .....+.+..+.+++.+-|+..+.
T Consensus 99 ~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~l~ 153 (171)
T cd02969 99 QEVAKAYGAACTPDFFLFDPDGKLVYRGRID----DSRPGNDPPVTGRDLRAALDALLA 153 (171)
T ss_pred hHHHHHcCCCcCCcEEEECCCCeEEEeeccc----CCcccccccccHHHHHHHHHHHHc
Confidence 4578889999999888874 56543210000 000111234577888888887764
No 116
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.1e-05 Score=79.93 Aligned_cols=123 Identities=16% Similarity=0.268 Sum_probs=92.7
Q ss_pred ccCcceecCcccHHHHHhcCC-CCeEEEEEecC----CCHHHhhhhHHHHHHHHHhCCCCCCCCC--eEEEEEEeccchh
Q 010286 44 EVDHAVELNATNFDAVLRDTP-ATYAVVEFFAN----WCPACRNYKPQYEKVARLFNGPNAAHPG--IILMTRVDCALKI 116 (513)
Q Consensus 44 ~~~~v~~L~~~~f~~~l~~~~-~~~vLV~FyA~----WCg~Ck~~~P~~~~lA~~~~~~~~~~~~--~v~~~~VDc~~d~ 116 (513)
.+..|+.+++++|...+...+ +..++|.|.|. -|.-|+.+..+|..+|+.+....+. .+ ++-|..||. |+
T Consensus 38 s~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~-sn~tklFF~~Vd~--~e 114 (331)
T KOG2603|consen 38 SESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPF-SNGTKLFFCMVDY--DE 114 (331)
T ss_pred CCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCC-CCcceEEEEEEec--cc
Confidence 356799999999999997554 45678888884 4999999999999999998654332 23 789999997 56
Q ss_pred cHHHHHHCCCCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhcc
Q 010286 117 NTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (513)
Q Consensus 117 n~~lc~~f~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~ 175 (513)
.+++.+.++++..|++++|+|.+-... ........+-+..+|.+.+|++....
T Consensus 115 ~p~~Fq~l~ln~~P~l~~f~P~~~n~~------~s~~~d~~~~g~~Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 115 SPQVFQQLNLNNVPHLVLFSPAKGNKK------RSDQMDQQDLGFEAEQIAQFVADRTK 167 (331)
T ss_pred cHHHHHHhcccCCCeEEEeCCCccccc------cCccchhhhcchhHHHHHHHHHHhhh
Confidence 899999999999999999976532111 11222222223459999999998764
No 117
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.25 E-value=2.7e-06 Score=75.21 Aligned_cols=72 Identities=14% Similarity=0.230 Sum_probs=45.5
Q ss_pred cHHHHHh--cCCCCeEEEEEecCCCHHHhhhhHHH---HHHHHHhCCCCCCCCCeEEEEEEeccc-hhcHHHHHHCCCCc
Q 010286 55 NFDAVLR--DTPATYAVVEFFANWCPACRNYKPQY---EKVARLFNGPNAAHPGIILMTRVDCAL-KINTNLCDKFSVGH 128 (513)
Q Consensus 55 ~f~~~l~--~~~~~~vLV~FyA~WCg~Ck~~~P~~---~~lA~~~~~~~~~~~~~v~~~~VDc~~-d~n~~lc~~f~I~~ 128 (513)
+|++.+. ...+++++|.|+++||++|+.+.... .++.+..++ .+.++.+|.+. +.+.. ..+ .+
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~-------~Fv~V~l~~d~td~~~~---~~g-~~ 79 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE-------DFIMLNLVHETTDKNLS---PDG-QY 79 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh-------CeEEEEEEeccCCCCcC---ccC-cc
Confidence 5555442 33468999999999999999999764 344454431 24444555421 12222 233 78
Q ss_pred cceEEEecC
Q 010286 129 YPMLLWGSP 137 (513)
Q Consensus 129 ~PTl~~f~~ 137 (513)
+||++|+.+
T Consensus 80 vPtivFld~ 88 (130)
T cd02960 80 VPRIMFVDP 88 (130)
T ss_pred cCeEEEECC
Confidence 999999854
No 118
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.24 E-value=5.7e-06 Score=77.94 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=40.9
Q ss_pred ceecCcccHHHHHhcCCCCeE-EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecc
Q 010286 48 AVELNATNFDAVLRDTPATYA-VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA 113 (513)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~v-LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~ 113 (513)
+..++++.+. +.+.+++++ |+.|||+|||+|+..+|.++++.+++++. .+.++.|+|+
T Consensus 25 l~d~~G~~vs--Ls~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~------gv~vv~vs~~ 83 (183)
T PTZ00256 25 AIDIDGQLVQ--LSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ------GLEILAFPCN 83 (183)
T ss_pred eEcCCCCEEe--HHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC------CcEEEEEecc
Confidence 3344444333 223335644 45669999999999999999999999742 4888899874
No 119
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.23 E-value=2.7e-06 Score=76.82 Aligned_cols=69 Identities=23% Similarity=0.455 Sum_probs=53.8
Q ss_pred CCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-----------------------hhcHHHH
Q 010286 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-----------------------KINTNLC 121 (513)
Q Consensus 65 ~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-----------------------d~n~~lc 121 (513)
++.+.++|-|.|||+||.|-|.++++.+.+++.+. .+-++-|+-+. +.-++++
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~----~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~ 108 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAA----PFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLS 108 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCC----ceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHH
Confidence 48899999999999999999999999999986542 24444454322 1235789
Q ss_pred HHCCCCccceEEEecC
Q 010286 122 DKFSVGHYPMLLWGSP 137 (513)
Q Consensus 122 ~~f~I~~~PTl~~f~~ 137 (513)
++|+|.++|++++..+
T Consensus 109 ~ky~v~~iP~l~i~~~ 124 (157)
T KOG2501|consen 109 EKYEVKGIPALVILKP 124 (157)
T ss_pred HhcccCcCceeEEecC
Confidence 9999999999988754
No 120
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.19 E-value=6.6e-06 Score=79.47 Aligned_cols=94 Identities=19% Similarity=0.329 Sum_probs=69.3
Q ss_pred HHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc---------hhcHHHHHHCCCC
Q 010286 57 DAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL---------KINTNLCDKFSVG 127 (513)
Q Consensus 57 ~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~---------d~n~~lc~~f~I~ 127 (513)
+..|.+..+++-|+.||.+.|+.|+.++|.++.+++.+. +.+..|+.+. -.+..++++++|.
T Consensus 112 ~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg---------~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~ 182 (215)
T PF13728_consen 112 DKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYG---------FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVK 182 (215)
T ss_pred HHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC---------CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCC
Confidence 345554445778999999999999999999999999995 5666666531 1367899999999
Q ss_pred ccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHH
Q 010286 128 HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (513)
Q Consensus 128 ~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i 170 (513)
.+|+++++.++.. .....-.|..+.++|.+-|
T Consensus 183 ~~Pal~Lv~~~~~-----------~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 183 VTPALFLVNPNTK-----------KWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred cCCEEEEEECCCC-----------eEEEEeeecCCHHHHHHhh
Confidence 9999999865420 1112236788888887643
No 121
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.19 E-value=5.7e-06 Score=61.40 Aligned_cols=60 Identities=30% Similarity=0.628 Sum_probs=47.4
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHH---HHCCCCccceEEEecCC
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLC---DKFSVGHYPMLLWGSPS 138 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc---~~f~I~~~PTl~~f~~g 138 (513)
++.||++||++|+.+.+.+.++ .... ..+.+..+|++.. .... ..+++.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLN-------KGVKFEAVDVDED--PALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhC-------CCcEEEEEEcCCC--hHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 2222 3589999998643 3333 48999999999998765
No 122
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.12 E-value=7.8e-06 Score=63.93 Aligned_cols=54 Identities=19% Similarity=0.426 Sum_probs=41.0
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchh--cHHHHHHCCCCccceEEEe
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFSVGHYPMLLWG 135 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~--n~~lc~~f~I~~~PTl~~f 135 (513)
+..|+++||++|++..+.+++. .+.+..+|++.+. -.++.+.+++.++||+.++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~-------------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~ 57 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK-------------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG 57 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC-------------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC
Confidence 5679999999999998887651 2667778875322 1346778999999999874
No 123
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.11 E-value=1.1e-05 Score=70.14 Aligned_cols=68 Identities=16% Similarity=0.434 Sum_probs=54.3
Q ss_pred CCCeEEEEEecC-CCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-------------------hhcHHHHHH
Q 010286 64 PATYAVVEFFAN-WCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------KINTNLCDK 123 (513)
Q Consensus 64 ~~~~vLV~FyA~-WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-------------------d~n~~lc~~ 123 (513)
.++++||.||++ ||++|+...+.+.++.++++.. ++.++.|..+. |.+.++++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~------~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 97 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK------GVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKA 97 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT------TEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccc------eEEeeecccccccchhhhhhhhccccccccCcchHHHHH
Confidence 458999999999 9999999999999999999753 47888887643 234467788
Q ss_pred CCCC------ccceEEEecC
Q 010286 124 FSVG------HYPMLLWGSP 137 (513)
Q Consensus 124 f~I~------~~PTl~~f~~ 137 (513)
|++. .+|+++++.+
T Consensus 98 ~~~~~~~~~~~~p~~~lid~ 117 (124)
T PF00578_consen 98 FGIEDEKDTLALPAVFLIDP 117 (124)
T ss_dssp TTCEETTTSEESEEEEEEET
T ss_pred cCCccccCCceEeEEEEECC
Confidence 8888 8888877643
No 124
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.04 E-value=1.2e-05 Score=71.61 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=50.7
Q ss_pred CCeEEEEEe-cCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-------------------hhcHHHHHHC
Q 010286 65 ATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------KINTNLCDKF 124 (513)
Q Consensus 65 ~~~vLV~Fy-A~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-------------------d~n~~lc~~f 124 (513)
+++++|.|| +.||+.|....|.+.++.+.+.+. .+.++.|..+. |.+..+.+.|
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~------~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 96 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL------GAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAY 96 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC------CCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHh
Confidence 578999999 589999999999999999998642 35666665432 2345677778
Q ss_pred CCCcc---------ceEEEec-CCc
Q 010286 125 SVGHY---------PMLLWGS-PSK 139 (513)
Q Consensus 125 ~I~~~---------PTl~~f~-~g~ 139 (513)
+|... |+++++. +|+
T Consensus 97 gv~~~~~~~~~~~~p~~~lid~~G~ 121 (140)
T cd03017 97 GVWGEKKKKYMGIERSTFLIDPDGK 121 (140)
T ss_pred CCccccccccCCcceeEEEECCCCE
Confidence 88877 7776664 343
No 125
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.03 E-value=1.8e-05 Score=73.44 Aligned_cols=42 Identities=10% Similarity=0.222 Sum_probs=35.0
Q ss_pred CCCeEEEEEecCC-CHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecc
Q 010286 64 PATYAVVEFFANW-CPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA 113 (513)
Q Consensus 64 ~~~~vLV~FyA~W-Cg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~ 113 (513)
.+++++|.||++| |++|+...|.+.++++++. ++.++.|+++
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--------~~~vv~vs~D 85 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--------NTVVLCISAD 85 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--------CcEEEEEeCC
Confidence 4578999999999 9999999999999998873 2666777654
No 126
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.02 E-value=2e-05 Score=74.58 Aligned_cols=94 Identities=16% Similarity=0.067 Sum_probs=62.5
Q ss_pred CCCeEEEEEe-cCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-----------------------hhcHH
Q 010286 64 PATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-----------------------KINTN 119 (513)
Q Consensus 64 ~~~~vLV~Fy-A~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-----------------------d~n~~ 119 (513)
.++++||.|| +.||++|+...|.+.++.+++.+.+ +.++.|.++. |.+..
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g------v~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~ 103 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG------VEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGV 103 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC------CcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccH
Confidence 3578999999 9999999999999999999986432 4555555431 12446
Q ss_pred HHHHCCCC------ccceEEEe-cCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHH
Q 010286 120 LCDKFSVG------HYPMLLWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (513)
Q Consensus 120 lc~~f~I~------~~PTl~~f-~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~ 172 (513)
+++.|+|. ..|+.+++ ++|++... .+......++.+++++.|+.
T Consensus 104 ~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~---------~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 104 LTRNFGVLIEEAGLADRGTFVIDPEGVIQAV---------EITDNGIGRDASELLRKIKA 154 (187)
T ss_pred HHHHhCCcccCCCceeeEEEEECCCCEEEEE---------EEeCCCCCCCHHHHHHHHHH
Confidence 78888886 45877666 45544321 01111123578888877753
No 127
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.00 E-value=2.5e-05 Score=72.81 Aligned_cols=94 Identities=10% Similarity=0.065 Sum_probs=61.0
Q ss_pred CCeEEEEEe-cCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccch--------------------------hc
Q 010286 65 ATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--------------------------IN 117 (513)
Q Consensus 65 ~~~vLV~Fy-A~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d--------------------------~n 117 (513)
++++||.|| ++||++|....|.+.++++++.+. ++.++.|.++.. ..
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~------~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 102 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL------NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPK 102 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC------CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCc
Confidence 578999999 899999999999999999999743 356666665321 22
Q ss_pred HHHHHHCCCC------ccceEEEec-CCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHh
Q 010286 118 TNLCDKFSVG------HYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (513)
Q Consensus 118 ~~lc~~f~I~------~~PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~ 173 (513)
..+.+.|+|. ..|+.+++. +|++... .+......++.+++.+.|++.
T Consensus 103 ~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~---------~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 103 KKISRDYGVLDEEEGVALRGTFIIDPEGIIRHI---------TVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred hhHHHHhCCccccCCceeeEEEEECCCCeEEEE---------EecCCCCCCCHHHHHHHHHHh
Confidence 3466677775 456666664 4433211 000111235677888888654
No 128
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.94 E-value=4.4e-05 Score=76.73 Aligned_cols=111 Identities=16% Similarity=0.131 Sum_probs=75.5
Q ss_pred ccCcceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhh------HHHHHHHHHhCCCCCCCCCeEEEEEEeccchhc
Q 010286 44 EVDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYK------PQYEKVARLFNGPNAAHPGIILMTRVDCALKIN 117 (513)
Q Consensus 44 ~~~~v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~------P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n 117 (513)
..+-|+.||..||++++++. ...+|.||.|-= --+... ...-+|+.++-+. ..|.|+.||. .++
T Consensus 32 GkDRVi~LneKNfk~~lKky--d~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~-----~gigfg~VD~--~Kd 101 (383)
T PF01216_consen 32 GKDRVIDLNEKNFKRALKKY--DVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLED-----KGIGFGMVDS--KKD 101 (383)
T ss_dssp SS--CEEE-TTTHHHHHHH---SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGG-----CTEEEEEEET--TTT
T ss_pred CccceEEcchhHHHHHHHhh--cEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccc-----cCcceEEecc--HHH
Confidence 35679999999999999986 567788888763 222222 2234555555432 3599999996 578
Q ss_pred HHHHHHCCCCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhccccC
Q 010286 118 TNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSY 178 (513)
Q Consensus 118 ~~lc~~f~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~~~~ 178 (513)
..+++++|+...+++.+|+.|.. ..|.|.++++.|+.||-..+...+
T Consensus 102 ~klAKKLgv~E~~SiyVfkd~~~--------------IEydG~~saDtLVeFl~dl~edPV 148 (383)
T PF01216_consen 102 AKLAKKLGVEEEGSIYVFKDGEV--------------IEYDGERSADTLVEFLLDLLEDPV 148 (383)
T ss_dssp HHHHHHHT--STTEEEEEETTEE--------------EEE-S--SHHHHHHHHHHHHSSSE
T ss_pred HHHHHhcCccccCcEEEEECCcE--------------EEecCccCHHHHHHHHHHhcccch
Confidence 99999999999999999998743 457899999999999998876444
No 129
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.93 E-value=4.4e-05 Score=75.27 Aligned_cols=96 Identities=15% Similarity=0.237 Sum_probs=70.4
Q ss_pred HHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccch---------hcHHHHHHCCCCcc
Q 010286 59 VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK---------INTNLCDKFSVGHY 129 (513)
Q Consensus 59 ~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d---------~n~~lc~~f~I~~~ 129 (513)
.|..-.+.+-||.||.+-|++|++++|.++.+++.+. +.+..|+.+.. .+..+++++||..+
T Consensus 144 ~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg---------i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~ 214 (256)
T TIGR02739 144 AIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG---------ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYF 214 (256)
T ss_pred HHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC---------CeEEEEecCCCCCCCCCCccCChHHHHhcCCccC
Confidence 4443334678999999999999999999999999995 56666665432 23568999999999
Q ss_pred ceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhc
Q 010286 130 PMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (513)
Q Consensus 130 PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l 174 (513)
|++++..++.- .....-.|.++.++|.+-|...+
T Consensus 215 Pal~Lv~~~t~-----------~~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 215 PALYLVNPKSQ-----------KMSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred ceEEEEECCCC-----------cEEEEeeccCCHHHHHHHHHHHH
Confidence 99999765310 11122368899999988775543
No 130
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.93 E-value=4.4e-05 Score=68.58 Aligned_cols=42 Identities=24% Similarity=0.283 Sum_probs=33.4
Q ss_pred CeEEEEE-ecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecc
Q 010286 66 TYAVVEF-FANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA 113 (513)
Q Consensus 66 ~~vLV~F-yA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~ 113 (513)
++++|.| +++||++|+...|.+.++.+++.+ ..+.++.|+.+
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~------~~v~vv~V~~~ 66 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDA------LGVELVAVGPE 66 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHh------cCeEEEEEeCC
Confidence 3445555 599999999999999999999964 24788888864
No 131
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.92 E-value=4.8e-05 Score=71.91 Aligned_cols=94 Identities=15% Similarity=0.067 Sum_probs=65.3
Q ss_pred CCCeEEEEEe-cCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-----------------------hhcHH
Q 010286 64 PATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-----------------------KINTN 119 (513)
Q Consensus 64 ~~~~vLV~Fy-A~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-----------------------d~n~~ 119 (513)
.++++|+.|| +.||+.|....+.+.++++++.+. .+.++.|+.+. |.+..
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~------g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ 103 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL------GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGA 103 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC------CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchH
Confidence 4578999999 999999999999999999999643 25566665432 23457
Q ss_pred HHHHCCC----Ccc--ceEEEec-CCcccCCCCCCccccchhhhccCcCCHHHHHHHHHH
Q 010286 120 LCDKFSV----GHY--PMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (513)
Q Consensus 120 lc~~f~I----~~~--PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~ 172 (513)
+++.||+ .+. |+.+++. +|++... .+......++.++++..|+.
T Consensus 104 ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~---------~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 104 LTRNFDNMREDEGLADRATFVVDPQGIIQAI---------EVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred HHHHcCCCcccCCceeeEEEEECCCCEEEEE---------EEeCCCCCCCHHHHHHHHHh
Confidence 8889998 355 8777764 5544321 11112334788999888854
No 132
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00019 Score=64.23 Aligned_cols=88 Identities=17% Similarity=0.344 Sum_probs=64.8
Q ss_pred CCCeEEEEEecCCCHHHhhhhHHHH---HHHHHhCCCCCCCCCeEEEEEEeccc--------------hhcHHHHHHCCC
Q 010286 64 PATYAVVEFFANWCPACRNYKPQYE---KVARLFNGPNAAHPGIILMTRVDCAL--------------KINTNLCDKFSV 126 (513)
Q Consensus 64 ~~~~vLV~FyA~WCg~Ck~~~P~~~---~lA~~~~~~~~~~~~~v~~~~VDc~~--------------d~n~~lc~~f~I 126 (513)
.++..++.|-++.|+.|.+|..... ++.+.+. +++.++.+|.+. ....+|++.|+|
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk-------~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~v 113 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK-------EHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAV 113 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh-------hCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcc
Confidence 3578999999999999999998763 4545554 357777777642 123589999999
Q ss_pred CccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHH
Q 010286 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (513)
Q Consensus 127 ~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i 170 (513)
+++||++||... ++.+..+.|.+..+++...+
T Consensus 114 rstPtfvFfdk~------------Gk~Il~lPGY~ppe~Fl~vl 145 (182)
T COG2143 114 RSTPTFVFFDKT------------GKTILELPGYMPPEQFLAVL 145 (182)
T ss_pred ccCceEEEEcCC------------CCEEEecCCCCCHHHHHHHH
Confidence 999999998532 13445567888888876654
No 133
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.86 E-value=5.2e-05 Score=72.64 Aligned_cols=96 Identities=8% Similarity=0.085 Sum_probs=64.9
Q ss_pred CCCeEEE-EEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-------------------------hhc
Q 010286 64 PATYAVV-EFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------------KIN 117 (513)
Q Consensus 64 ~~~~vLV-~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-------------------------d~n 117 (513)
.+++++| .|+++||+.|....+.+.++++++++. ++.++.|.++. |.+
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~------~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~ 99 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL------GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADID 99 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC------CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCC
Confidence 3466655 688999999999999999999999743 25556665531 224
Q ss_pred HHHHHHCCCC------ccceEEEec-CCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhc
Q 010286 118 TNLCDKFSVG------HYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (513)
Q Consensus 118 ~~lc~~f~I~------~~PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l 174 (513)
..+++.|||. .+|+++++. +|++.. ..+....++++.++++..|+...
T Consensus 100 ~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~---------~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 100 KELAREYNLIDENSGATVRGVFIIDPNQIVRW---------MIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred hHHHHHcCCccccCCcEEeEEEEECCCCEEEE---------EEEeCCCCCCCHHHHHHHHHHhh
Confidence 5677888874 478777764 443321 11122245689999999887654
No 134
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.86 E-value=4.3e-05 Score=69.59 Aligned_cols=44 Identities=9% Similarity=0.178 Sum_probs=35.2
Q ss_pred CCCeEEEEEecC-CCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecc
Q 010286 64 PATYAVVEFFAN-WCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA 113 (513)
Q Consensus 64 ~~~~vLV~FyA~-WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~ 113 (513)
+++++||.||+. ||+.|+...+.+.++++.+++. .+.++.|+.+
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~------~v~vi~Is~d 73 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA------GVVVLGISTD 73 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC------CCEEEEEcCC
Confidence 357899999986 6888999999999999999753 3677777653
No 135
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.85 E-value=2.9e-05 Score=73.10 Aligned_cols=74 Identities=14% Similarity=0.279 Sum_probs=51.3
Q ss_pred eecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc---------hhcHH
Q 010286 49 VELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL---------KINTN 119 (513)
Q Consensus 49 ~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~---------d~n~~ 119 (513)
..++++.+. +.+-+++++||.|||+|||.|++ .|.++++.++|++ ..+.|..|.|.+ ++-.+
T Consensus 11 ~~~~G~~v~--Ls~~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~------~gl~Vlg~p~nqf~~qe~~~~~ei~~ 81 (183)
T PRK10606 11 TTIDGEVTT--LEKYAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWAD------QGFVVLGFPCNQFLGQEPGSDEEIKT 81 (183)
T ss_pred ECCCCCEEe--HHHhCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhh------CCeEEEEeeccccccCCCCCHHHHHH
Confidence 334444333 33334688999999999999975 8899999999974 348999999842 12244
Q ss_pred HHH-HCCCCccceE
Q 010286 120 LCD-KFSVGHYPML 132 (513)
Q Consensus 120 lc~-~f~I~~~PTl 132 (513)
.|+ +|++. +|.+
T Consensus 82 f~~~~~g~~-Fpv~ 94 (183)
T PRK10606 82 YCRTTWGVT-FPMF 94 (183)
T ss_pred HHHHccCCC-ceeE
Confidence 565 67774 5644
No 136
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.84 E-value=0.0001 Score=64.18 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=74.2
Q ss_pred cHHHHHh--cCCCCeEEEEEecC----CCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCc
Q 010286 55 NFDAVLR--DTPATYAVVEFFAN----WCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGH 128 (513)
Q Consensus 55 ~f~~~l~--~~~~~~vLV~FyA~----WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~ 128 (513)
+|++++. +...|+++|+||++ ||..|+..... +++.+.++ .++.+...|.+..+..+++..+++++
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln-------~~fv~w~~dv~~~eg~~la~~l~~~~ 76 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYIN-------TRMLFWACSVAKPEGYRVSQALRERT 76 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHH-------cCEEEEEEecCChHHHHHHHHhCCCC
Confidence 5555553 23358999999999 99999765411 33444444 24788889998778889999999999
Q ss_pred cceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhc
Q 010286 129 YPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (513)
Q Consensus 129 ~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l 174 (513)
||++.++.+.. + .-..+.++.|..++++|+..+...+
T Consensus 77 ~P~~~~l~~~~---~------~~~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 77 YPFLAMIMLKD---N------RMTIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred CCEEEEEEecC---C------ceEEEEEEeCCCCHHHHHHHHHHHH
Confidence 99998873210 0 1134567899999999999887654
No 137
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.80 E-value=3.9e-05 Score=60.81 Aligned_cols=54 Identities=15% Similarity=0.272 Sum_probs=37.7
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHH-----CCCCccceEEEecCC
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDK-----FSVGHYPMLLWGSPS 138 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~-----f~I~~~PTl~~f~~g 138 (513)
++.|+++||++|+++.+.++++.. .+-.+|++. +...... +++.++|+++ +.+|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~-------------~~~~idi~~--~~~~~~~~~~~~~~~~~vP~i~-~~~g 60 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGA-------------AYEWVDIEE--DEGAADRVVSVNNGNMTVPTVK-FADG 60 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCC-------------ceEEEeCcC--CHhHHHHHHHHhCCCceeCEEE-ECCC
Confidence 678999999999999998876532 334567642 3333333 4899999984 5554
No 138
>PRK15000 peroxidase; Provisional
Probab=97.80 E-value=8.2e-05 Score=71.14 Aligned_cols=93 Identities=10% Similarity=0.131 Sum_probs=63.6
Q ss_pred CCeEEEEEec-CCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc--------------------------hhc
Q 010286 65 ATYAVVEFFA-NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL--------------------------KIN 117 (513)
Q Consensus 65 ~~~vLV~FyA-~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~--------------------------d~n 117 (513)
+++++|.||+ .||+.|....|.+.++++++++. ++.++.|.++. |.+
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~------g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~ 107 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR------GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVK 107 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC------CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCC
Confidence 5789999999 49999999999999999999753 36666666642 122
Q ss_pred HHHHHHCCCC------ccceEEEec-CCcccCCCCCCccccchhhhccCcCCHHHHHHHHHH
Q 010286 118 TNLCDKFSVG------HYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (513)
Q Consensus 118 ~~lc~~f~I~------~~PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~ 172 (513)
.++++.|+|. .+|+.+++. +|++.. ..+....-+++.++++..++.
T Consensus 108 ~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~---------~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 108 REIQKAYGIEHPDEGVALRGSFLIDANGIVRH---------QVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred cHHHHHcCCccCCCCcEEeEEEEECCCCEEEE---------EEecCCCCCCCHHHHHHHHHH
Confidence 3566777776 577666664 444332 111112334788999888865
No 139
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.77 E-value=0.00013 Score=58.49 Aligned_cols=73 Identities=18% Similarity=0.317 Sum_probs=51.7
Q ss_pred EEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEEecCCcccCCCCCCcc
Q 010286 70 VEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQ 149 (513)
Q Consensus 70 V~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~f~~g~~~~~~~~~~~ 149 (513)
|.+++++|++|......+++++..++ +.+-.+|. ....++ .+|||.++||+++ +|+
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~---------i~~ei~~~--~~~~~~-~~ygv~~vPalvI--ng~---------- 58 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG---------IEVEIIDI--EDFEEI-EKYGVMSVPALVI--NGK---------- 58 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT---------EEEEEEET--TTHHHH-HHTT-SSSSEEEE--TTE----------
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC---------CeEEEEEc--cCHHHH-HHcCCCCCCEEEE--CCE----------
Confidence 44578889999999999999998873 55556664 234555 9999999999976 332
Q ss_pred ccchhhhccC-cCCHHHHHHHHH
Q 010286 150 EKKEIRALED-WQTADGLLTWIN 171 (513)
Q Consensus 150 ~~~~v~~~~g-~~~~e~L~~~i~ 171 (513)
..+.| ..+.++|.+||+
T Consensus 59 -----~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 59 -----VVFVGRVPSKEELKELLE 76 (76)
T ss_dssp -----EEEESS--HHHHHHHHHH
T ss_pred -----EEEEecCCCHHHHHHHhC
Confidence 23566 667788888774
No 140
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.76 E-value=8.9e-05 Score=72.76 Aligned_cols=89 Identities=12% Similarity=0.146 Sum_probs=65.7
Q ss_pred CCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccch---------hcHHHHHHCCCCccceEEEe
Q 010286 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK---------INTNLCDKFSVGHYPMLLWG 135 (513)
Q Consensus 65 ~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d---------~n~~lc~~f~I~~~PTl~~f 135 (513)
+.+-|+.||.+-|++|++++|.++.+++.+. +.+..|+.+.. .+...+.+++|..+|++++.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg---------~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv 213 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG---------LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLV 213 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC---------CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEE
Confidence 4577999999999999999999999999995 55555554321 23456789999999999997
Q ss_pred cCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHh
Q 010286 136 SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (513)
Q Consensus 136 ~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~ 173 (513)
.++.- .....-.|.++.++|.+-|...
T Consensus 214 ~~~t~-----------~~~pv~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 214 DPKSG-----------SVRPLSYGFITQDDLAKRFLNV 240 (248)
T ss_pred ECCCC-----------cEEEEeeccCCHHHHHHHHHHH
Confidence 65310 1112236888999998777554
No 141
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.75 E-value=0.00052 Score=59.30 Aligned_cols=113 Identities=21% Similarity=0.323 Sum_probs=77.9
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHH-HHhCCCCCCCCCeEEEEEEecc---chhcHHHHH
Q 010286 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVA-RLFNGPNAAHPGIILMTRVDCA---LKINTNLCD 122 (513)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA-~~~~~~~~~~~~~v~~~~VDc~---~d~n~~lc~ 122 (513)
..+.|+.-+|+.+|... +.+||.|=... +==.-..+|.++| +..... +.+.++.|-+. ..+|.+|++
T Consensus 5 G~v~LD~~tFdKvi~kf--~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~-----~dLLvAeVGikDYGek~N~~Lae 75 (126)
T PF07912_consen 5 GCVPLDELTFDKVIPKF--KYVLVKFDVAY--PYGEKHDAFKKLAKEASASS-----DDLLVAEVGIKDYGEKENMELAE 75 (126)
T ss_dssp TSEEESTTHHHHHGGGS--SEEEEEEEESS----CHHHHHHHHHHHHHHCC------SSEEEEEEECBSSSS-CCHHHHH
T ss_pred ceeeccceehhheeccC--ceEEEEEeccC--CCcchHHHHHHHHHHHhcCC-----CceEEEEeCcccccchhHHHHHH
Confidence 47889999999999986 77999996543 1122345788999 444322 46899999764 346899999
Q ss_pred HCCC--CccceEEEecCCcccCCCCCCccccchhhhc--cCcCCHHHHHHHHHHhccccCCC
Q 010286 123 KFSV--GHYPMLLWGSPSKFVAGSWEPNQEKKEIRAL--EDWQTADGLLTWINKQTSRSYGL 180 (513)
Q Consensus 123 ~f~I--~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~--~g~~~~e~L~~~i~~~l~~~~~l 180 (513)
+|+| ..||.+++|..+ . ++...| .|..+.+.|..|+.++.+--+++
T Consensus 76 ry~i~ke~fPv~~LF~~~-~-----------~~pv~~p~~~~~t~~~l~~fvk~~t~~yigl 125 (126)
T PF07912_consen 76 RYKIDKEDFPVIYLFVGD-K-----------EEPVRYPFDGDVTADNLQRFVKSNTGLYIGL 125 (126)
T ss_dssp HTT-SCCC-SEEEEEESS-T-----------TSEEEE-TCS-S-HHHHHHHHHHTSS--TTS
T ss_pred HhCCCcccCCEEEEecCC-C-----------CCCccCCccCCccHHHHHHHHHhCCCeeecC
Confidence 9999 579999999843 1 223445 78899999999999987755543
No 142
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.62 E-value=0.0002 Score=64.57 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=34.7
Q ss_pred CeEEEEEe-cCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecc
Q 010286 66 TYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA 113 (513)
Q Consensus 66 ~~vLV~Fy-A~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~ 113 (513)
++++|.|| ++||+.|....|.++++++++.+. .+.++.|+.+
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~------~v~vi~vs~d 71 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAA------GAEVLGISVD 71 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC------CCEEEEecCC
Confidence 67788888 999999999999999999999742 3677777653
No 143
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.58 E-value=0.00012 Score=59.14 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=40.8
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchh---cHHHHHHCCCCccceEEE
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI---NTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~---n~~lc~~f~I~~~PTl~~ 134 (513)
++.|+++||++|++..+.++++. +. +.+.+..||-..+. ...+.+.+++.++|++++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~-------~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i 60 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK-------PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI 60 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC-------CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 47899999999999999999876 22 22556666642111 123677789999999864
No 144
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.58 E-value=0.00017 Score=64.73 Aligned_cols=59 Identities=15% Similarity=0.331 Sum_probs=42.8
Q ss_pred CCCeEEEEEecCC-CHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccch-hcHHHHHHCCCCccc
Q 010286 64 PATYAVVEFFANW-CPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK-INTNLCDKFSVGHYP 130 (513)
Q Consensus 64 ~~~~vLV~FyA~W-Cg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d-~n~~lc~~f~I~~~P 130 (513)
.++++||.||++| |++|+...|.+.++++++. .+.++.|+.+.. ...+..+++++..+|
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--------~~~vi~Is~d~~~~~~~~~~~~~~~~~~ 85 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--------NTVVLTISADLPFAQKRWCGAEGVDNVT 85 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--------CCEEEEEECCCHHHHHHHHHhcCCCCce
Confidence 4578999999999 6999999999999999874 267778876421 123345555554455
No 145
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.56 E-value=0.00018 Score=64.03 Aligned_cols=44 Identities=18% Similarity=0.370 Sum_probs=35.6
Q ss_pred CCCeEEEEEe-cCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecc
Q 010286 64 PATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA 113 (513)
Q Consensus 64 ~~~~vLV~Fy-A~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~ 113 (513)
.+++++|.|| +.||+.|+...|.+.++++.++. ..+.++.|..+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~------~~~~~i~is~d 65 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK------GGAEVLGVSVD 65 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEeCC
Confidence 3578899999 78999999999999999999853 23667777653
No 146
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.54 E-value=0.00039 Score=69.00 Aligned_cols=94 Identities=11% Similarity=0.163 Sum_probs=64.9
Q ss_pred CCeEEEEEe-cCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc--------------------------hhc
Q 010286 65 ATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL--------------------------KIN 117 (513)
Q Consensus 65 ~~~vLV~Fy-A~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~--------------------------d~n 117 (513)
++++|+.|| +.||+.|....|.|.++++++.+.+ +.++.|.++. |.+
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g------v~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~ 171 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG------VKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDIS 171 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC------CEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCC
Confidence 467888888 8999999999999999999997532 4555555432 124
Q ss_pred HHHHHHCCCC-----ccceEEEec-CCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHh
Q 010286 118 TNLCDKFSVG-----HYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (513)
Q Consensus 118 ~~lc~~f~I~-----~~PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~ 173 (513)
.++++.||+. ..|+.+++. +|++.. ..+.....+++.++++..|+..
T Consensus 172 ~~iakayGv~~~~g~a~R~tFIID~dG~I~~---------~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 172 REVSKSFGLLRDEGFSHRASVLVDKAGVVKH---------VAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred hHHHHHcCCCCcCCceecEEEEECCCCEEEE---------EEEeCCCCCCCHHHHHHHHHHh
Confidence 5688889985 478877774 554432 1112234457889988887643
No 147
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.49 E-value=0.00037 Score=67.37 Aligned_cols=93 Identities=9% Similarity=0.074 Sum_probs=63.0
Q ss_pred CCe-EEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-------------------------hhcH
Q 010286 65 ATY-AVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------------KINT 118 (513)
Q Consensus 65 ~~~-vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-------------------------d~n~ 118 (513)
+++ +|+.|+++||+.|....|.+.++++++.+. ++.++.|.++. |.+.
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~------gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~ 101 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL------NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLG 101 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC------CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCc
Confidence 456 467999999999999999999999999753 36677776643 1234
Q ss_pred HHHHHCCCC-------ccceEEEec-CCcccCCCCCCccccchhhhccCcCCHHHHHHHHHH
Q 010286 119 NLCDKFSVG-------HYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (513)
Q Consensus 119 ~lc~~f~I~-------~~PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~ 172 (513)
.+++.||+. ..|+++++. +|++... .+......++.++++..|+.
T Consensus 102 ~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~---------~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 102 KVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI---------MYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred hHHHHcCCCccCCCCceeeEEEEECCCCEEEEE---------EEcCCCCCCCHHHHHHHHHH
Confidence 577788873 578777764 4544321 01111234788899888865
No 148
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.47 E-value=0.00042 Score=61.49 Aligned_cols=76 Identities=18% Similarity=0.364 Sum_probs=45.9
Q ss_pred cCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHC---CCC
Q 010286 51 LNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF---SVG 127 (513)
Q Consensus 51 L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f---~I~ 127 (513)
++++..+ .+........++.|..+|||.|++..|.+.++++... .+.+--+.- |+|.++..+| |.+
T Consensus 28 l~~~~~~-~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--------~i~~~~i~r--d~~~el~~~~lt~g~~ 96 (129)
T PF14595_consen 28 LSEEQIE-KLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP--------NIEVRIILR--DENKELMDQYLTNGGR 96 (129)
T ss_dssp --HHHHH-HHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T--------TEEEEEE-H--HHHHHHTTTTTT-SS-
T ss_pred CCHHHHH-HHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC--------CCeEEEEEe--cCChhHHHHHHhCCCe
Confidence 3333333 4444444567888999999999999999999999853 255544442 4677777765 688
Q ss_pred ccceEEEecC
Q 010286 128 HYPMLLWGSP 137 (513)
Q Consensus 128 ~~PTl~~f~~ 137 (513)
.+||++++..
T Consensus 97 ~IP~~I~~d~ 106 (129)
T PF14595_consen 97 SIPTFIFLDK 106 (129)
T ss_dssp -SSEEEEE-T
T ss_pred ecCEEEEEcC
Confidence 9999999854
No 149
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.44 E-value=0.00055 Score=65.62 Aligned_cols=93 Identities=10% Similarity=0.106 Sum_probs=60.7
Q ss_pred Ce-EEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-------------------------hhcHH
Q 010286 66 TY-AVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------------KINTN 119 (513)
Q Consensus 66 ~~-vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-------------------------d~n~~ 119 (513)
++ +|+.|+++||+.|....+.+.++++++++. ++.++.|.++. |.+..
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~------gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ 99 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKR------NVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDRE 99 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHc------CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHH
Confidence 44 456889999999999999999999999753 36677776542 12356
Q ss_pred HHHHCCCC----ccc----eEEEe-cCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHh
Q 010286 120 LCDKFSVG----HYP----MLLWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (513)
Q Consensus 120 lc~~f~I~----~~P----Tl~~f-~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~ 173 (513)
+++.||+. +.| +.+++ ++|++... .+.....+++.+++...|++.
T Consensus 100 ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~---------~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 100 VAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLI---------LYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred HHHHcCCccccCCCCceeeEEEEECCCCeEEEE---------EecCCCCCCCHHHHHHHHHHH
Confidence 78888875 333 34444 45543311 011112357888898888664
No 150
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.42 E-value=0.00091 Score=60.06 Aligned_cols=30 Identities=30% Similarity=0.592 Sum_probs=26.7
Q ss_pred CCeEEEEEecCCCHHHhhhhHHHHHHHHHh
Q 010286 65 ATYAVVEFFANWCPACRNYKPQYEKVARLF 94 (513)
Q Consensus 65 ~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~ 94 (513)
.++++++|+.++||+|+.+.|.++++...+
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 467899999999999999999999987665
No 151
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.42 E-value=0.0007 Score=59.01 Aligned_cols=77 Identities=17% Similarity=0.337 Sum_probs=47.7
Q ss_pred ccHHHHHhc--CCCCeEEEEEec-------CCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccch-----hcHH
Q 010286 54 TNFDAVLRD--TPATYAVVEFFA-------NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK-----INTN 119 (513)
Q Consensus 54 ~~f~~~l~~--~~~~~vLV~FyA-------~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d-----~n~~ 119 (513)
++|.+.+.. .++++++|.|++ +|||.|+.-.|..++.-.... ....++.|.+... .+..
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~-------~~~~lv~v~VG~r~~Wkdp~n~ 78 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP-------ENARLVYVEVGDRPEWKDPNNP 78 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S-------TTEEEEEEE---HHHHC-TTSH
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC-------CCceEEEEEcCCHHHhCCCCCC
Confidence 455666654 445788999997 599999999999998776643 2366666665321 1112
Q ss_pred HHH--HCCCCccceEEEecC
Q 010286 120 LCD--KFSVGHYPMLLWGSP 137 (513)
Q Consensus 120 lc~--~f~I~~~PTl~~f~~ 137 (513)
.-. +++|+++|||+-+..
T Consensus 79 fR~~p~~~l~~IPTLi~~~~ 98 (119)
T PF06110_consen 79 FRTDPDLKLKGIPTLIRWET 98 (119)
T ss_dssp HHH--CC---SSSEEEECTS
T ss_pred ceEcceeeeeecceEEEECC
Confidence 222 499999999998754
No 152
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.41 E-value=0.00075 Score=55.08 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=54.6
Q ss_pred EEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccch--hcHHHHHHCC--CCccceEEEecCCcccCC
Q 010286 68 AVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKFS--VGHYPMLLWGSPSKFVAG 143 (513)
Q Consensus 68 vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d--~n~~lc~~f~--I~~~PTl~~f~~g~~~~~ 143 (513)
.++.|+.+||++|++....+++++.++. .+.+..+|...+ ...++.+..+ +..+|++++ +|+..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~--------~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~i-- 69 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD--------DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHI-- 69 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc--------CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEE--
Confidence 3788999999999999999999987653 367777887532 1234544444 588999875 33221
Q ss_pred CCCCccccchhhhccCcCCHHHHHHHHHHhcc
Q 010286 144 SWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (513)
Q Consensus 144 ~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~ 175 (513)
| ..++|.++++++++
T Consensus 70 ---------------g--g~~~~~~~~~~~~~ 84 (85)
T PRK11200 70 ---------------G--GCTDFEAYVKENLG 84 (85)
T ss_pred ---------------c--CHHHHHHHHHHhcc
Confidence 1 35778888877654
No 153
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.38 E-value=0.00075 Score=66.08 Aligned_cols=83 Identities=16% Similarity=0.271 Sum_probs=59.9
Q ss_pred CCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEE---------------------------------
Q 010286 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRV--------------------------------- 110 (513)
Q Consensus 64 ~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~V--------------------------------- 110 (513)
+++.+++.|.-+-||+|+++.++++++.+. .|.+..+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~----------~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~ 175 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL----------GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMK 175 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC----------CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHc
Confidence 356789999999999999999998876431 0111111
Q ss_pred -------ec--cchhcHHHHHHCCCCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHh
Q 010286 111 -------DC--ALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (513)
Q Consensus 111 -------Dc--~~d~n~~lc~~f~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~ 173 (513)
.| ..+++.++++++||+++||++ +.+|+ .+.|..+.++|.++|++.
T Consensus 176 ~~~~~~~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~----------------~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 176 GKDVSPASCDVDIADHYALGVQFGVQGTPAIV-LSNGT----------------LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred CCCCCcccccchHHHhHHHHHHcCCccccEEE-EcCCe----------------EeeCCCCHHHHHHHHHHc
Confidence 11 124577899999999999998 55553 346788999999998764
No 154
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.36 E-value=0.00047 Score=68.65 Aligned_cols=111 Identities=15% Similarity=0.231 Sum_probs=74.1
Q ss_pred CcceecC-cccHHHHHhcC-CCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHH
Q 010286 46 DHAVELN-ATNFDAVLRDT-PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDK 123 (513)
Q Consensus 46 ~~v~~L~-~~~f~~~l~~~-~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~ 123 (513)
..|..++ ++.|-+.+.+. ++.+|||.||-+-++.|+.+...+..||..|. .++|.+|... .- .+...
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp--------~vKFvkI~a~--~~-~~~~~ 193 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP--------EVKFVKIRAS--KC-PASEN 193 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T--------TSEEEEEEEC--GC-CTTTT
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC--------ceEEEEEehh--cc-CcccC
Confidence 3577775 47888888654 34689999999999999999999999999995 4899999853 11 26788
Q ss_pred CCCCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHh
Q 010286 124 FSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (513)
Q Consensus 124 f~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~ 173 (513)
|.+...|||++|++|.+...- . ..........+.++|..|+.++
T Consensus 194 f~~~~LPtllvYk~G~l~~~~-V-----~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 194 FPDKNLPTLLVYKNGDLIGNF-V-----GLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp S-TTC-SEEEEEETTEEEEEE-C-----TGGGCT-TT--HHHHHHHHHTT
T ss_pred CcccCCCEEEEEECCEEEEeE-E-----ehHHhcCCCCCHHHHHHHHHHc
Confidence 999999999999998755320 0 0011122346778888888654
No 155
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.34 E-value=0.00083 Score=64.12 Aligned_cols=94 Identities=11% Similarity=0.160 Sum_probs=62.5
Q ss_pred CCCeEEEEEec-CCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccch--------------------------h
Q 010286 64 PATYAVVEFFA-NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--------------------------I 116 (513)
Q Consensus 64 ~~~~vLV~FyA-~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d--------------------------~ 116 (513)
.+++++|.||+ .||++|....+.+.++++++.+. ++.++.|+++.. .
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~------g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~ 108 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL------NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADK 108 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc------CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECc
Confidence 35788999995 88999999999999999999753 367777776521 2
Q ss_pred cHHHHHHCCCC------ccceEEEec-CCcccCCCCCCccccchhhhccCcCCHHHHHHHHHH
Q 010286 117 NTNLCDKFSVG------HYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (513)
Q Consensus 117 n~~lc~~f~I~------~~PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~ 172 (513)
+.++++.||+. .+|+.+++. +|+++.. .+....-+++.++++..|..
T Consensus 109 ~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~---------~~~~~~~~r~~~e~l~~l~a 162 (199)
T PTZ00253 109 TKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQI---------TVNDMPVGRNVEEVLRLLEA 162 (199)
T ss_pred HhHHHHHcCCcccCCCceEEEEEEECCCCEEEEE---------EecCCCCCCCHHHHHHHHHh
Confidence 34678888875 367776664 4433210 01111234677777777754
No 156
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.34 E-value=0.00075 Score=65.29 Aligned_cols=94 Identities=11% Similarity=0.073 Sum_probs=61.8
Q ss_pred CCeEEE-EEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccch-------------------------hcH
Q 010286 65 ATYAVV-EFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK-------------------------INT 118 (513)
Q Consensus 65 ~~~vLV-~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d-------------------------~n~ 118 (513)
+++++| .|+++||+.|....+.+.+++.++++. ++.++.|+++.. .+.
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~------g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~ 106 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL------NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMG 106 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC------CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCch
Confidence 456554 788999999999999999999999753 366677766421 234
Q ss_pred HHHHHCCCC-------ccceEEEec-CCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHh
Q 010286 119 NLCDKFSVG-------HYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (513)
Q Consensus 119 ~lc~~f~I~-------~~PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~ 173 (513)
++++.||+. ..|+.+++. +|++.. ..+....-+++.++++..|+..
T Consensus 107 ~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~---------~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 107 NVAKRLGMIHAESSTATVRAVFIVDDKGTVRL---------ILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HHHHHcCCcccccCCceeEEEEEECCCCEEEE---------EEecCCCCCCCHHHHHHHHHHh
Confidence 667777763 356666654 443321 1111123347899999888754
No 157
>PRK13189 peroxiredoxin; Provisional
Probab=97.34 E-value=0.00075 Score=65.63 Aligned_cols=94 Identities=11% Similarity=0.071 Sum_probs=61.2
Q ss_pred CCeE-EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-------------------------hhcH
Q 010286 65 ATYA-VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------------KINT 118 (513)
Q Consensus 65 ~~~v-LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-------------------------d~n~ 118 (513)
++++ |+.|+++||+.|....+.+.++++++++. ++.++.|.++. |.+.
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~------~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~ 108 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL------NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRG 108 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc------CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCcc
Confidence 4654 45778999999999999999999999753 35666666542 1234
Q ss_pred HHHHHCCCC-------ccceEEEec-CCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHh
Q 010286 119 NLCDKFSVG-------HYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (513)
Q Consensus 119 ~lc~~f~I~-------~~PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~ 173 (513)
++++.||+. .+|+.+++. +|++.. ..+.....+++.+++...|+..
T Consensus 109 ~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~---------~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 109 EIAKKLGMISPGKGTNTVRAVFIIDPKGIIRA---------ILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred HHHHHhCCCccccCCCceeEEEEECCCCeEEE---------EEecCCCCCCCHHHHHHHHHHh
Confidence 567777765 356666654 443321 1112223567888888888754
No 158
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.29 E-value=0.0012 Score=60.53 Aligned_cols=79 Identities=14% Similarity=0.341 Sum_probs=50.6
Q ss_pred ecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhH-HH--HHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHC--
Q 010286 50 ELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKP-QY--EKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF-- 124 (513)
Q Consensus 50 ~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P-~~--~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f-- 124 (513)
..+++.|+..-.+ +|+++|.++.+||+.|+.|.- .| .++|+.++ ..+.-++||- |+.+++-..|
T Consensus 24 ~w~~ea~~~Ak~e--~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN-------~~FI~VkvDr--ee~Pdid~~y~~ 92 (163)
T PF03190_consen 24 PWGEEALEKAKKE--NKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLN-------RNFIPVKVDR--EERPDIDKIYMN 92 (163)
T ss_dssp -SSHHHHHHHHHH--T--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHH-------HH-EEEEEET--TT-HHHHHHHHH
T ss_pred cCCHHHHHHHHhc--CCcEEEEEEecCCcchhhhcccCcCCHHHHHHHh-------CCEEEEEecc--ccCccHHHHHHH
Confidence 3455677776665 489999999999999999885 44 46777776 3466677884 6788888877
Q ss_pred ------CCCccceEEEe-cCCc
Q 010286 125 ------SVGHYPMLLWG-SPSK 139 (513)
Q Consensus 125 ------~I~~~PTl~~f-~~g~ 139 (513)
+..|+|+.+|. +.|+
T Consensus 93 ~~~~~~~~gGwPl~vfltPdg~ 114 (163)
T PF03190_consen 93 AVQAMSGSGGWPLTVFLTPDGK 114 (163)
T ss_dssp HHHHHHS---SSEEEEE-TTS-
T ss_pred HHHHhcCCCCCCceEEECCCCC
Confidence 78999988776 4443
No 159
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.27 E-value=0.00058 Score=65.00 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=22.5
Q ss_pred CCeEEEEEecCCCHHHhhhhHHHHH
Q 010286 65 ATYAVVEFFANWCPACRNYKPQYEK 89 (513)
Q Consensus 65 ~~~vLV~FyA~WCg~Ck~~~P~~~~ 89 (513)
++..++.|+.+.||+|+++.+.+.+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh
Confidence 4678999999999999999988875
No 160
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.26 E-value=0.0005 Score=61.31 Aligned_cols=47 Identities=11% Similarity=0.213 Sum_probs=37.7
Q ss_pred CCCeEEEEEecCCCHH-HhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecc
Q 010286 64 PATYAVVEFFANWCPA-CRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA 113 (513)
Q Consensus 64 ~~~~vLV~FyA~WCg~-Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~ 113 (513)
.+++++|.||++||++ |....|.+.++++.+++.+. +++.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~---~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGG---DDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhc---CceEEEEEEEC
Confidence 3578999999999997 99999999999999964210 14788888764
No 161
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.00092 Score=57.30 Aligned_cols=76 Identities=17% Similarity=0.325 Sum_probs=54.4
Q ss_pred ccHHHHHhcC-CCCeEEEEEec--------CCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-----hhcHH
Q 010286 54 TNFDAVLRDT-PATYAVVEFFA--------NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-----KINTN 119 (513)
Q Consensus 54 ~~f~~~l~~~-~~~~vLV~FyA--------~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-----d~n~~ 119 (513)
+.|++.+.+- +++-++|.|++ ||||.|.+-.|.+.+.-+... ..+.|+.|+... +.+..
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap-------~~~~~v~v~VG~rp~Wk~p~n~ 85 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP-------EDVHFVHVYVGNRPYWKDPANP 85 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC-------CceEEEEEEecCCCcccCCCCc
Confidence 5677766543 23448999998 799999999999998777443 458888888742 12233
Q ss_pred HHHHCCC-CccceEEEec
Q 010286 120 LCDKFSV-GHYPMLLWGS 136 (513)
Q Consensus 120 lc~~f~I-~~~PTl~~f~ 136 (513)
.-.+.++ .++||++=+.
T Consensus 86 FR~d~~~lt~vPTLlrw~ 103 (128)
T KOG3425|consen 86 FRKDPGILTAVPTLLRWK 103 (128)
T ss_pred cccCCCceeecceeeEEc
Confidence 4455666 8999998765
No 162
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.12 E-value=0.0041 Score=57.74 Aligned_cols=107 Identities=20% Similarity=0.235 Sum_probs=81.9
Q ss_pred cCcceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHC
Q 010286 45 VDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (513)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f 124 (513)
-+.+..++.+++........ ..+++.|+..-......+...++.+|+.++ +.+.|+.+|+. ....+++.+
T Consensus 76 ~P~v~~~t~~n~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~-------~~~~f~~~d~~--~~~~~~~~~ 145 (184)
T PF13848_consen 76 FPLVPELTPENFEKLFSSPK-PPVLILFDNKDNESTEAFKKELQDIAKKFK-------GKINFVYVDAD--DFPRLLKYF 145 (184)
T ss_dssp STSCEEESTTHHHHHHSTSS-EEEEEEEETTTHHHHHHHHHHHHHHHHCTT-------TTSEEEEEETT--TTHHHHHHT
T ss_pred cccccccchhhHHHHhcCCC-ceEEEEEEcCCchhHHHHHHHHHHHHHhcC-------CeEEEEEeehH--HhHHHHHHc
Confidence 34588999999998887641 337788877778888999999999999886 45899999985 578899999
Q ss_pred CCC--ccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHH
Q 010286 125 SVG--HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (513)
Q Consensus 125 ~I~--~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~ 172 (513)
||. .+|+++++....- .......+..+.+.|.+|+++
T Consensus 146 ~i~~~~~P~~vi~~~~~~-----------~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 146 GIDEDDLPALVIFDSNKG-----------KYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTTTSSSSEEEEEETTTS-----------EEEE--SSCGCHHHHHHHHHH
T ss_pred CCCCccCCEEEEEECCCC-----------cEEcCCCCCCCHHHHHHHhcC
Confidence 998 8999998863210 111112678999999999974
No 163
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.03 E-value=0.0073 Score=50.12 Aligned_cols=89 Identities=18% Similarity=0.224 Sum_probs=65.1
Q ss_pred ccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEE
Q 010286 54 TNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLL 133 (513)
Q Consensus 54 ~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~ 133 (513)
+.++..+.. ...++|-|+.++++ .....|.++|+.+++ .+.|+.++ +.++..++++.. |++.
T Consensus 8 ~~l~~~~~~--~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~-------~~~F~~~~-----~~~~~~~~~~~~-~~i~ 69 (97)
T cd02981 8 EELEKFLDK--DDVVVVGFFKDEES---EEYKTFEKVAESLRD-------DYGFGHTS-----DKEVAKKLKVKP-GSVV 69 (97)
T ss_pred HHHHHHhcc--CCeEEEEEECCCCc---HHHHHHHHHHHhccc-------CCeEEEEC-----hHHHHHHcCCCC-CceE
Confidence 334544544 36689999999987 567789999999863 47787776 467888888764 8999
Q ss_pred EecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHH
Q 010286 134 WGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (513)
Q Consensus 134 ~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~ 172 (513)
+|++.. +....|.|..+.++|.+||..
T Consensus 70 l~~~~~------------~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 70 LFKPFE------------EEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred EeCCcc------------cCCccCCCCCCHHHHHHHHHh
Confidence 987641 122457888889999999864
No 164
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.95 E-value=0.0054 Score=51.12 Aligned_cols=97 Identities=18% Similarity=0.261 Sum_probs=71.9
Q ss_pred cccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCC----c
Q 010286 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG----H 128 (513)
Q Consensus 53 ~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~----~ 128 (513)
-.+|...+... ..|||.|..+-=. --.....+.++|+.+++ .=.++-|||.+.+...||.++.|. -
T Consensus 9 ~KdfKKLLRTr--~NVLvLy~ks~k~-a~~~Lk~~~~~A~~vkG-------~gT~~~vdCgd~e~kKLCKKlKv~~~~kp 78 (112)
T cd03067 9 HKDFKKLLRTR--NNVLVLYSKSAKS-AEALLKLLSDVAQAVKG-------QGTIAWIDCGDSESRKLCKKLKVDPSSKP 78 (112)
T ss_pred hHHHHHHHhhc--CcEEEEEecchhh-HHHHHHHHHHHHHHhcC-------ceeEEEEecCChHHHHHHHHHccCCCCCC
Confidence 46788888764 3378887776433 33344578889999874 457899999877789999999998 5
Q ss_pred cc-eEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHH
Q 010286 129 YP-MLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (513)
Q Consensus 129 ~P-Tl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~ 172 (513)
-| +++.|++|.+. ..|+...+...|++|++.
T Consensus 79 ~~~~LkHYKdG~fH-------------kdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 79 KPVELKHYKDGDFH-------------TEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred CcchhhcccCCCcc-------------ccccchhhHHHHHHHhhC
Confidence 55 56778888664 346777889999999863
No 165
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.92 E-value=0.0073 Score=54.87 Aligned_cols=44 Identities=27% Similarity=0.551 Sum_probs=33.9
Q ss_pred CCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEec
Q 010286 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDC 112 (513)
Q Consensus 64 ~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc 112 (513)
..+++|++|+..-||||+.+.+.+.++-+.+-+. +.|.+.-++.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~-----~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDP-----GKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-----TTEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCC-----CceEEEEEEc
Confidence 3467899999999999999999999988887321 4577776654
No 166
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.67 E-value=0.0058 Score=67.55 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=61.1
Q ss_pred CeEEE-EEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEEecCCcccCCC
Q 010286 66 TYAVV-EFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGS 144 (513)
Q Consensus 66 ~~vLV-~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~f~~g~~~~~~ 144 (513)
+++-| .|.+++|++|....-.+++++.... +|..-.||.+ +.++++.+|+|.++|++++ +|
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--------~i~~~~i~~~--~~~~~~~~~~v~~vP~~~i--~~------ 537 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--------NVEAEMIDVS--HFPDLKDEYGIMSVPAIVV--DD------ 537 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--------CceEEEEECc--ccHHHHHhCCceecCEEEE--CC------
Confidence 44444 5579999999999999999988752 4788888974 5799999999999999987 11
Q ss_pred CCCccccchhhhccCcCCHHHHHHHH
Q 010286 145 WEPNQEKKEIRALEDWQTADGLLTWI 170 (513)
Q Consensus 145 ~~~~~~~~~v~~~~g~~~~e~L~~~i 170 (513)
+ ..+.|..+.++|+++|
T Consensus 538 -------~--~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 538 -------Q--QVYFGKKTIEEMLELI 554 (555)
T ss_pred -------E--EEEeeCCCHHHHHHhh
Confidence 1 2356777888888876
No 167
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.60 E-value=0.0067 Score=49.72 Aligned_cols=58 Identities=24% Similarity=0.217 Sum_probs=40.3
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchh--cHHHHHHCC--CCccceEEE
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFS--VGHYPMLLW 134 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~--n~~lc~~f~--I~~~PTl~~ 134 (513)
++.|..+|||+|++..-.++++..+.. .+.+..+|...+. ..++.+..+ +..+|++++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--------~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi 63 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--------DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV 63 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE
Confidence 678999999999999888887754432 2556677764221 234656666 378999965
No 168
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.57 E-value=0.012 Score=50.98 Aligned_cols=78 Identities=15% Similarity=0.275 Sum_probs=66.1
Q ss_pred cccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceE
Q 010286 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPML 132 (513)
Q Consensus 53 ~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl 132 (513)
....++++.....+.++|-|--.|-+.|.++-..+.+.+..+. +-..++-+|.+ +-+++-+-|++...||+
T Consensus 11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vs-------nfa~Iylvdid--eV~~~~~~~~l~~p~tv 81 (142)
T KOG3414|consen 11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVS-------NFAVIYLVDID--EVPDFVKMYELYDPPTV 81 (142)
T ss_pred HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHh-------hceEEEEEecc--hhhhhhhhhcccCCceE
Confidence 4667788877777899999999999999999999999999987 34678888874 57888899999999999
Q ss_pred EEecCCc
Q 010286 133 LWGSPSK 139 (513)
Q Consensus 133 ~~f~~g~ 139 (513)
.||-+++
T Consensus 82 mfFfn~k 88 (142)
T KOG3414|consen 82 MFFFNNK 88 (142)
T ss_pred EEEEcCc
Confidence 8886654
No 169
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.55 E-value=0.015 Score=57.58 Aligned_cols=84 Identities=17% Similarity=0.263 Sum_probs=55.7
Q ss_pred CCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEe---------------------------------
Q 010286 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVD--------------------------------- 111 (513)
Q Consensus 65 ~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VD--------------------------------- 111 (513)
.+.+++.|.-+-||+|+++.++...+.+. +.|.+..+-
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~---------g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~ 187 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS---------GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGG 187 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc---------CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhh
Confidence 45679999999999999998887665432 112221111
Q ss_pred -------------cc--chhcHHHHHHCCCCccceEEEecC-CcccCCCCCCccccchhhhccCcCCHHHHHHHHH
Q 010286 112 -------------CA--LKINTNLCDKFSVGHYPMLLWGSP-SKFVAGSWEPNQEKKEIRALEDWQTADGLLTWIN 171 (513)
Q Consensus 112 -------------c~--~d~n~~lc~~f~I~~~PTl~~f~~-g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~ 171 (513)
|. .++|.++.+++||+++||+++-.. | .+..+.|..+.++|.+.+.
T Consensus 188 ~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G--------------~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 188 KLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG--------------TLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--------------CEEEecCCCCHHHHHHHhC
Confidence 10 123556888999999999988532 2 1234568888888887764
No 170
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.51 E-value=0.0033 Score=50.39 Aligned_cols=55 Identities=18% Similarity=0.281 Sum_probs=38.6
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccch-h--cHHHHHHCCCCccceEEE
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK-I--NTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d-~--n~~lc~~f~I~~~PTl~~ 134 (513)
++.|+++|||+|+...+.++++... ..+..+|...+ . ...+.+..++.++|++++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~-----------~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~ 59 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK-----------PAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI 59 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC-----------cEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 5889999999999999999887553 33455554321 1 124556678999999854
No 171
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.50 E-value=0.011 Score=44.70 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=38.5
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccch--hcHHHHHHCCCCccceEEE
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d--~n~~lc~~f~I~~~PTl~~ 134 (513)
++.|..+||++|++....+++. ++.+-.+|.+.+ ...++.+..+..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-------------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-------------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-------------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-------------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 4779999999999988877432 266777777543 2234444459999999986
No 172
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0035 Score=59.78 Aligned_cols=65 Identities=12% Similarity=0.298 Sum_probs=57.6
Q ss_pred CCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEEecCC
Q 010286 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPS 138 (513)
Q Consensus 64 ~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~f~~g 138 (513)
+.+..++.|||+||..|.++.-.+..+++... .+.+++++. ++.++++..+.|...|++.++..|
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~--------~~~~~k~~a--~~~~eis~~~~v~~vp~~~~~~~~ 80 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK--------NAQFLKLEA--EEFPEISNLIAVEAVPYFVFFFLG 80 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh--------hheeeeehh--hhhhHHHHHHHHhcCceeeeeecc
Confidence 45778999999999999999999999999883 378999995 689999999999999999988655
No 173
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.38 E-value=0.0078 Score=46.53 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=35.2
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchh--cHHHHHHCCCCccceEEE
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~--n~~lc~~f~I~~~PTl~~ 134 (513)
++.|+++||++|++..+.+++. .+.+..+|.+.+. ..++.+..++.++|++.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-------------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-------------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-------------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 5789999999999988777652 1445556653211 122333347899999976
No 174
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.35 E-value=0.014 Score=63.94 Aligned_cols=83 Identities=12% Similarity=0.164 Sum_probs=65.6
Q ss_pred CeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEEecCCcccCCCC
Q 010286 66 TYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSW 145 (513)
Q Consensus 66 ~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~f~~g~~~~~~~ 145 (513)
..-+-.|+++.|++|......+++++... +.|..-.||. .+++++..+|+|.++|++++ +++
T Consensus 117 ~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~--------~~i~~~~id~--~~~~~~~~~~~v~~VP~~~i--~~~------ 178 (517)
T PRK15317 117 DFHFETYVSLSCHNCPDVVQALNLMAVLN--------PNITHTMIDG--ALFQDEVEARNIMAVPTVFL--NGE------ 178 (517)
T ss_pred CeEEEEEEcCCCCCcHHHHHHHHHHHHhC--------CCceEEEEEc--hhCHhHHHhcCCcccCEEEE--CCc------
Confidence 34588899999999999999999998863 3588889986 46899999999999999976 221
Q ss_pred CCccccchhhhccCcCCHHHHHHHHHHhcc
Q 010286 146 EPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (513)
Q Consensus 146 ~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~ 175 (513)
..+.|..+.+++++.+.+..+
T Consensus 179 ---------~~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 179 ---------EFGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred ---------EEEecCCCHHHHHHHHhcccc
Confidence 235677888888888876543
No 175
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.20 E-value=0.017 Score=46.92 Aligned_cols=60 Identities=25% Similarity=0.409 Sum_probs=42.7
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEec--cch----------------------------hcH
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDC--ALK----------------------------INT 118 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc--~~d----------------------------~n~ 118 (513)
++.|+.+.||+|..+.|.++++..... +++.+..+.+ ... ++.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 73 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADD-------GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADT 73 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcC-------CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 468999999999999999999874433 2344444432 111 134
Q ss_pred HHHHHCCCCccceEEEe
Q 010286 119 NLCDKFSVGHYPMLLWG 135 (513)
Q Consensus 119 ~lc~~f~I~~~PTl~~f 135 (513)
.+.++.||.++||+++.
T Consensus 74 ~~~~~~g~~g~Pt~v~~ 90 (98)
T cd02972 74 ALARALGVTGTPTFVVN 90 (98)
T ss_pred HHHHHcCCCCCCEEEEC
Confidence 56778999999999884
No 176
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=96.02 E-value=0.042 Score=48.24 Aligned_cols=77 Identities=14% Similarity=0.251 Sum_probs=61.8
Q ss_pred CcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccc-
Q 010286 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYP- 130 (513)
Q Consensus 52 ~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~P- 130 (513)
+.-..+++|.+..++.++|-|--+|=+.|.++-..+.++|..++ +-..++.||.+ +-++..+-|++. -|
T Consensus 7 s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~-------~~a~IY~vDi~--~Vpdfn~~yel~-dP~ 76 (133)
T PF02966_consen 7 SGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVK-------NFAVIYLVDID--EVPDFNQMYELY-DPC 76 (133)
T ss_dssp SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT-------TTEEEEEEETT--TTHCCHHHTTS--SSE
T ss_pred ccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhh-------cceEEEEEEcc--cchhhhcccccC-CCe
Confidence 34567888877778999999999999999999999999999997 34789999974 678888999999 77
Q ss_pred eEEEecCC
Q 010286 131 MLLWGSPS 138 (513)
Q Consensus 131 Tl~~f~~g 138 (513)
|++||-++
T Consensus 77 tvmFF~rn 84 (133)
T PF02966_consen 77 TVMFFFRN 84 (133)
T ss_dssp EEEEEETT
T ss_pred EEEEEecC
Confidence 67776444
No 177
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=95.99 E-value=0.033 Score=51.41 Aligned_cols=31 Identities=32% Similarity=0.683 Sum_probs=27.4
Q ss_pred CCeEEEEEecCCCHHHhhhhHHHHHHHHHhC
Q 010286 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFN 95 (513)
Q Consensus 65 ~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~ 95 (513)
+++.|++|+...||||+.+.+.+.++.+++.
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~ 45 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAWVKKLP 45 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHHHHhCC
Confidence 3678999999999999999999999888763
No 178
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=95.86 E-value=0.13 Score=44.35 Aligned_cols=104 Identities=15% Similarity=0.094 Sum_probs=71.6
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHH---hCCCCCCCCCeEEEEEEeccchhcHHHHHHC
Q 010286 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARL---FNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (513)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~---~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f 124 (513)
|.+++.++.+...... .+..+.||.+ ..=..+.+.++++|+. ++ +++.|+.+|.+ ......+.|
T Consensus 1 ~~e~t~e~~~~~~~~~--~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~k-------gki~Fv~~d~~--~~~~~~~~f 67 (111)
T cd03072 1 VREITFENAEELTEEG--LPFLILFHDK--DDLESLKEFKQAVARQLISEK-------GAINFLTADGD--KFRHPLLHL 67 (111)
T ss_pred CcccccccHHHHhcCC--CCeEEEEecc--hHHHHHHHHHHHHHHHHHhcC-------ceEEEEEEech--HhhhHHHHc
Confidence 3467788887655543 4445566622 2236788899999999 76 67999999974 344488999
Q ss_pred CCCc--cceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhcc
Q 010286 125 SVGH--YPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (513)
Q Consensus 125 ~I~~--~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~ 175 (513)
|+.. .|.+.+...... .....+.+..+.+.|.+|+++.+.
T Consensus 68 gl~~~~~P~i~i~~~~~~-----------~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 68 GKTPADLPVIAIDSFRHM-----------YLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred CCCHhHCCEEEEEcchhc-----------CcCCCCccccCHHHHHHHHHHHhc
Confidence 9997 899998643210 011114467889999999998764
No 179
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.77 E-value=0.013 Score=54.59 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=66.6
Q ss_pred CcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccce
Q 010286 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPM 131 (513)
Q Consensus 52 ~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PT 131 (513)
++.+|-+.+..+. -|++.||-+--..|+-+-..++.||+.+- ...|++||. +..+-++.+++|+-.||
T Consensus 73 ~Ekdf~~~~~kS~--kVVcHFY~~~f~RCKimDkhLe~LAk~h~--------eTrFikvna--e~~PFlv~kL~IkVLP~ 140 (211)
T KOG1672|consen 73 SEKDFFEEVKKSE--KVVCHFYRPEFFRCKIMDKHLEILAKRHV--------ETRFIKVNA--EKAPFLVTKLNIKVLPT 140 (211)
T ss_pred cHHHHHHHhhcCc--eEEEEEEcCCCcceehHHHHHHHHHHhcc--------cceEEEEec--ccCceeeeeeeeeEeee
Confidence 3667777776653 37999999999999999999999999874 278999996 56788999999999999
Q ss_pred EEEecCCccc
Q 010286 132 LLWGSPSKFV 141 (513)
Q Consensus 132 l~~f~~g~~~ 141 (513)
+.+|.+|+..
T Consensus 141 v~l~k~g~~~ 150 (211)
T KOG1672|consen 141 VALFKNGKTV 150 (211)
T ss_pred EEEEEcCEEE
Confidence 9999998654
No 180
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.62 E-value=0.031 Score=42.82 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=37.3
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchh--cHHHHHHCCCCccceEEE
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~--n~~lc~~f~I~~~PTl~~ 134 (513)
++.|+++||++|+...+.+++.. +.+..+|...+. ..++.+..+...+|++++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-------------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-------------IEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-------------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 57899999999999998888653 345566664322 234455567788998854
No 181
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.40 E-value=0.086 Score=44.85 Aligned_cols=83 Identities=14% Similarity=0.229 Sum_probs=58.2
Q ss_pred CcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc--hhcHHHHHHCCCC-c
Q 010286 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL--KINTNLCDKFSVG-H 128 (513)
Q Consensus 52 ~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~--d~n~~lc~~f~I~-~ 128 (513)
+.+++++++..+.+++++|.=.++.||-..+....|++...... +.+.++.+|.-. +-...++.+|||+ .
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~-------~~~~~y~l~v~~~R~vSn~IAe~~~V~He 78 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESP-------DEIPVYYLDVIEYRPVSNAIAEDFGVKHE 78 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----------EEEEEGGGGHHHHHHHHHHHT----
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCC-------ccceEEEEEEEeCchhHHHHHHHhCCCcC
Confidence 45789999998877887777789999999999999999888875 238888999742 2345689999998 5
Q ss_pred cceEEEecCCccc
Q 010286 129 YPMLLWGSPSKFV 141 (513)
Q Consensus 129 ~PTl~~f~~g~~~ 141 (513)
-|-++++++|+.+
T Consensus 79 SPQ~ili~~g~~v 91 (105)
T PF11009_consen 79 SPQVILIKNGKVV 91 (105)
T ss_dssp SSEEEEEETTEEE
T ss_pred CCcEEEEECCEEE
Confidence 7999999998643
No 182
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.27 E-value=0.079 Score=58.07 Aligned_cols=83 Identities=12% Similarity=0.174 Sum_probs=63.6
Q ss_pred CeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEEecCCcccCCCC
Q 010286 66 TYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSW 145 (513)
Q Consensus 66 ~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~f~~g~~~~~~~ 145 (513)
..-+-.|+++.||+|....-.+.+++.... .|..-.||. .+++++..+|+|.++|++++ +++
T Consensus 118 ~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--------~i~~~~id~--~~~~~~~~~~~v~~VP~~~i--~~~------ 179 (515)
T TIGR03140 118 PLHFETYVSLTCQNCPDVVQALNQMALLNP--------NISHTMIDG--ALFQDEVEALGIQGVPAVFL--NGE------ 179 (515)
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--------CceEEEEEc--hhCHHHHHhcCCcccCEEEE--CCc------
Confidence 445888999999999998888888877742 477778886 46899999999999999976 221
Q ss_pred CCccccchhhhccCcCCHHHHHHHHHHhcc
Q 010286 146 EPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (513)
Q Consensus 146 ~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~ 175 (513)
..+.|..+.+++.+.+.+..+
T Consensus 180 ---------~~~~g~~~~~~~~~~l~~~~~ 200 (515)
T TIGR03140 180 ---------EFHNGRMDLAELLEKLEETAG 200 (515)
T ss_pred ---------EEEecCCCHHHHHHHHhhccC
Confidence 235677788888777765543
No 183
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=95.25 E-value=0.12 Score=45.93 Aligned_cols=109 Identities=17% Similarity=0.317 Sum_probs=75.2
Q ss_pred cceecCcccH-HHHHhcCCCCeEEEEEecC--CCHH-H-hhhhHHHHHHHHHhCCCCCCCCCe-EEEEEEeccchhcHHH
Q 010286 47 HAVELNATNF-DAVLRDTPATYAVVEFFAN--WCPA-C-RNYKPQYEKVARLFNGPNAAHPGI-ILMTRVDCALKINTNL 120 (513)
Q Consensus 47 ~v~~L~~~~f-~~~l~~~~~~~vLV~FyA~--WCg~-C-k~~~P~~~~lA~~~~~~~~~~~~~-v~~~~VDc~~d~n~~l 120 (513)
.+++|+++++ +..-.. ++.-+|-|.-. -|.. + ..+...++++|+.++ ++ +.|+-+|.+ +...+
T Consensus 3 ~~~~l~~~~~~~~~C~~--~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~k-------gk~i~Fv~vd~~--~~~~~ 71 (130)
T cd02983 3 EIIELTSEDVFEETCEE--KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFK-------KKPWGWLWTEAG--AQLDL 71 (130)
T ss_pred ceEEecCHHHHHhhccC--CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhc-------CCcEEEEEEeCc--ccHHH
Confidence 4677877655 434433 25556666432 1322 3 356788999999998 34 899999974 45669
Q ss_pred HHHCCCC--ccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhccccC
Q 010286 121 CDKFSVG--HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSY 178 (513)
Q Consensus 121 c~~f~I~--~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~~~~ 178 (513)
.+.|||. ++|++.++...+ .....+.|..+.+.|.+|+++.+....
T Consensus 72 ~~~fgl~~~~~P~v~i~~~~~------------~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 72 EEALNIGGFGYPAMVAINFRK------------MKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred HHHcCCCccCCCEEEEEeccc------------CccccccCccCHHHHHHHHHHHHcCCc
Confidence 9999996 499999876531 112225688999999999999986554
No 184
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=95.01 E-value=0.35 Score=41.63 Aligned_cols=100 Identities=14% Similarity=0.155 Sum_probs=66.1
Q ss_pred eecCcccHHHHHhcCCCCeEEEEEe----cCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHC
Q 010286 49 VELNATNFDAVLRDTPATYAVVEFF----ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (513)
Q Consensus 49 ~~L~~~~f~~~l~~~~~~~vLV~Fy----A~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f 124 (513)
.+++.+|...... .+.++-|| +.-=..=..+.+.++++|+.+++ +++.|+.+|.+ +.....+.|
T Consensus 2 ~~~~~en~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~------gki~Fv~~D~~--~~~~~l~~f 69 (111)
T cd03073 2 GHRTKDNRAQFTK----KPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPD------RKLNFAVADKE--DFSHELEEF 69 (111)
T ss_pred CeeccchHHHhcc----CCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcC------CeEEEEEEcHH--HHHHHHHHc
Confidence 3566777776632 23344444 22223346688999999999972 25999999964 445588999
Q ss_pred CCCc----cceEEEecCCcccCCCCCCccccchhhhccCcC-CHHHHHHHHHHh
Q 010286 125 SVGH----YPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQ-TADGLLTWINKQ 173 (513)
Q Consensus 125 ~I~~----~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~-~~e~L~~~i~~~ 173 (513)
|+.. .|++.++.... .. ....+.. +.+.|.+|+++.
T Consensus 70 gl~~~~~~~P~~~i~~~~~------------~K-Y~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 70 GLDFSGGEKPVVAIRTAKG------------KK-YVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CCCcccCCCCEEEEEeCCC------------Cc-cCCCcccCCHHHHHHHHHHh
Confidence 9985 99999865320 00 1134556 889999999864
No 185
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.86 E-value=0.078 Score=42.49 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=38.4
Q ss_pred EEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchh-cHHHHHHCCCCccceEEE
Q 010286 68 AVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI-NTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 68 vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~-n~~lc~~f~I~~~PTl~~ 134 (513)
-++.|..+||++|++..-.+++. .+.+-.+|++.+. ..++....+...+|++++
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~-------------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i 63 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEK-------------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI 63 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHc-------------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence 47889999999999988777642 1445556764332 234555678999999965
No 186
>PHA03050 glutaredoxin; Provisional
Probab=94.70 E-value=0.08 Score=45.41 Aligned_cols=56 Identities=20% Similarity=0.153 Sum_probs=36.3
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccch-h----cHHHHHHCCCCccceEEE
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK-I----NTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d-~----n~~lc~~f~I~~~PTl~~ 134 (513)
++.|..+|||+|++..-.+++..-... .+-.+|.+.. . ...+-+.-|.+.+|++++
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~----------~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRG----------AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcC----------CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence 788999999999998877776532111 2334444321 1 234555568889999965
No 187
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=94.68 E-value=0.11 Score=41.86 Aligned_cols=80 Identities=23% Similarity=0.351 Sum_probs=56.8
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEEecCCcccCCCCCCc
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPN 148 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~f~~g~~~~~~~~~~ 148 (513)
|+.|..+.|+-|......++++.... .+.+-.||++ ++.++..+|+. .+|.+.+-..+...
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~---------~~~l~~vDI~--~d~~l~~~Y~~-~IPVl~~~~~~~~~------- 62 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF---------PFELEEVDID--EDPELFEKYGY-RIPVLHIDGIRQFK------- 62 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS---------TCEEEEEETT--TTHHHHHHSCT-STSEEEETT-GGGC-------
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc---------CceEEEEECC--CCHHHHHHhcC-CCCEEEEcCccccc-------
Confidence 67889999999999998888765443 3788999985 67889999996 69998873321111
Q ss_pred cccchhhhccCcCCHHHHHHHHH
Q 010286 149 QEKKEIRALEDWQTADGLLTWIN 171 (513)
Q Consensus 149 ~~~~~v~~~~g~~~~e~L~~~i~ 171 (513)
......+..+.+.|.+||+
T Consensus 63 ----~~~~~~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 63 ----EQEELKWRFDEEQLRAWLE 81 (81)
T ss_dssp ----TSEEEESSB-HHHHHHHHH
T ss_pred ----ccceeCCCCCHHHHHHHhC
Confidence 0133456788999998874
No 188
>PHA03005 sulfhydryl oxidase; Provisional
Probab=94.59 E-value=0.086 Score=43.07 Aligned_cols=66 Identities=14% Similarity=0.281 Sum_probs=45.1
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHHHHhHhccCChHHHHHHHHHhcC-CCCChhHH--HHHHH-Hhhhh
Q 010286 315 GLWVLLHSLSVRIDDGESQFTFTAVCDFIHNFFVCEECRQHFYQMCSS-PFNKTRDF--ALWLW-STHNQ 380 (513)
Q Consensus 315 glW~l~H~ltv~~~~~~~~~~~~~~~~~v~~ff~C~~C~~hf~~~~~~-~~~~~~~~--~lWlw-~~HN~ 380 (513)
|+|+..|.+..++.+++..+......--|-.-.||.+||+|=.+.+.+ .|=|-.|. ++... +.||.
T Consensus 9 a~W~vIFivi~k~~~~~~iE~cK~~lytI~~tLPC~~Cr~HA~~ai~knnimSs~diNyi~~FfI~l~Nn 78 (96)
T PHA03005 9 AIWTVIFIVISKAKLDGNIEACKRKLYTICSTLPCPACRRHAKEAIEKNNIMSSNDLNYIYFFFISLFNN 78 (96)
T ss_pred hHHHHHHHHHHhccCCCcHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhcCccccCCccchhHHHHHHHHH
Confidence 689999999999988877655444444445568999999999888877 44344432 33333 55554
No 189
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=94.54 E-value=0.099 Score=44.66 Aligned_cols=83 Identities=19% Similarity=0.261 Sum_probs=57.2
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhH---HHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHH
Q 010286 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKP---QYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDK 123 (513)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P---~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~ 123 (513)
....++.++++..+... . ..|.|++.-|..+....- .+-+|.+.+. +.+..+.|+ .+...++..+
T Consensus 10 g~~~vd~~~ld~~l~~~--~-~~vlf~~gDp~r~~E~~DvaVILPEL~~af~-------~~~~~avv~--~~~e~~L~~r 77 (107)
T PF07449_consen 10 GWPRVDADTLDAFLAAP--G-DAVLFFAGDPARFPETADVAVILPELVKAFP-------GRFRGAVVA--RAAERALAAR 77 (107)
T ss_dssp TEEEE-CCCHHHHHHCC--S-CEEEEESS-TTTSTTCCHHHHHHHHHHCTST-------TSEEEEEEE--HHHHHHHHHH
T ss_pred CCeeechhhHHHHHhCC--C-cEEEEECCCCCcCcccccceeEcHHHHHhhh-------CccceEEEC--chhHHHHHHH
Confidence 35678899999999874 3 356677766554444333 4445555554 567777777 3567899999
Q ss_pred CCCCccceEEEecCCccc
Q 010286 124 FSVGHYPMLLWGSPSKFV 141 (513)
Q Consensus 124 f~I~~~PTl~~f~~g~~~ 141 (513)
|++..+|+++||+.|+..
T Consensus 78 ~gv~~~PaLvf~R~g~~l 95 (107)
T PF07449_consen 78 FGVRRWPALVFFRDGRYL 95 (107)
T ss_dssp HT-TSSSEEEEEETTEEE
T ss_pred hCCccCCeEEEEECCEEE
Confidence 999999999999998654
No 190
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=94.40 E-value=0.11 Score=49.14 Aligned_cols=110 Identities=19% Similarity=0.300 Sum_probs=81.9
Q ss_pred cceecC-cccHHHHHhcC-CCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHC
Q 010286 47 HAVELN-ATNFDAVLRDT-PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (513)
Q Consensus 47 ~v~~L~-~~~f~~~l~~~-~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f 124 (513)
.|.+|+ .+.|-++|... +...++|..|-+--+-|-.+...+.-||.+|. .++|.+|-- .+....++|
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP--------~vKFckiks---s~~gas~~F 207 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP--------IVKFCKIKS---SNTGASDRF 207 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC--------ceeEEEeee---ccccchhhh
Confidence 466664 58888888765 34567899999999999999999999999984 589999884 467788999
Q ss_pred CCCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHh
Q 010286 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (513)
Q Consensus 125 ~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~ 173 (513)
...+.||+++|++|.+... .. +....+.....+.++..|++++
T Consensus 208 ~~n~lP~LliYkgGeLIgN-Fv-----~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 208 SLNVLPTLLIYKGGELIGN-FV-----SVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred cccCCceEEEeeCCchhHH-HH-----HHHHHHhhhhhhhhHHHHHHHc
Confidence 9999999999999865531 00 1111223345567777888764
No 191
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=94.20 E-value=0.22 Score=45.97 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEEecCCcccCCCCCCccccchhhhccCc-C
Q 010286 83 YKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW-Q 161 (513)
Q Consensus 83 ~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~-~ 161 (513)
..-.|.++|+.+. +.+.|+.++ +.+++.+++|.. |++++|+++. .....|.|. .
T Consensus 8 ~~~~f~~~A~~~~-------~~~~F~~~~-----~~~~~~~~~~~~-p~i~~~k~~~------------~~~~~y~~~~~ 62 (184)
T PF13848_consen 8 LFEIFEEAAEKLK-------GDYQFGVTF-----NEELAKKYGIKE-PTIVVYKKFD------------EKPVVYDGDKF 62 (184)
T ss_dssp HHHHHHHHHHHHT-------TTSEEEEEE------HHHHHHCTCSS-SEEEEEECTT------------TSEEEESSSTT
T ss_pred HHHHHHHHHHhCc-------CCcEEEEEc-----HHHHHHHhCCCC-CcEEEeccCC------------CCceecccccC
Confidence 4567899999997 348888887 467999999999 9999998731 223457776 8
Q ss_pred CHHHHHHHHHHhccccC
Q 010286 162 TADGLLTWINKQTSRSY 178 (513)
Q Consensus 162 ~~e~L~~~i~~~l~~~~ 178 (513)
+.++|.+||..+.-+.+
T Consensus 63 ~~~~l~~fI~~~~~P~v 79 (184)
T PF13848_consen 63 TPEELKKFIKKNSFPLV 79 (184)
T ss_dssp SHHHHHHHHHHHSSTSC
T ss_pred CHHHHHHHHHHhccccc
Confidence 99999999998865443
No 192
>PRK10329 glutaredoxin-like protein; Provisional
Probab=94.06 E-value=0.17 Score=40.92 Aligned_cols=74 Identities=9% Similarity=0.009 Sum_probs=48.6
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchh-cHHHHHHCCCCccceEEEecCCcccCCCCCC
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI-NTNLCDKFSVGHYPMLLWGSPSKFVAGSWEP 147 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~-n~~lc~~f~I~~~PTl~~f~~g~~~~~~~~~ 147 (513)
++.|..+||++|++..-.+++. .|.+-.+|++.+. ..+..+..+...+|++++ ++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~-------------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~--------- 58 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR-------------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD--------- 58 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC-------------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC---------
Confidence 5778899999999988777541 2667778875322 122345568889999975 11
Q ss_pred ccccchhhhccCcCCHHHHHHHHHHhc
Q 010286 148 NQEKKEIRALEDWQTADGLLTWINKQT 174 (513)
Q Consensus 148 ~~~~~~v~~~~g~~~~e~L~~~i~~~l 174 (513)
. ..++.+.+.|.+++..+.
T Consensus 59 -------~-~~~Gf~~~~l~~~~~~~~ 77 (81)
T PRK10329 59 -------L-SWSGFRPDMINRLHPAPH 77 (81)
T ss_pred -------E-EEecCCHHHHHHHHHhhh
Confidence 1 123467788888776554
No 193
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=94.04 E-value=0.069 Score=42.55 Aligned_cols=53 Identities=13% Similarity=0.322 Sum_probs=35.0
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccch--hcHHHHHHCCCCccceEEE
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d--~n~~lc~~f~I~~~PTl~~ 134 (513)
++.|..+||++|+.....+++.. +.+-.+|++.+ .-.++.+..+...+|++++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~-------------i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i 55 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKG-------------VTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI 55 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcC-------------CCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence 35688999999999998887532 33444555322 1233444557889999865
No 194
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=93.77 E-value=0.078 Score=44.67 Aligned_cols=53 Identities=15% Similarity=0.090 Sum_probs=34.3
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhc-H----HHHHHCCCCccceEEE
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKIN-T----NLCDKFSVGHYPMLLW 134 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n-~----~lc~~f~I~~~PTl~~ 134 (513)
++.|..+|||+|++..-.+++.. +.+..+|++.+.+ . .+.+..|.+.+|.+++
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~-------------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi 67 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG-------------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV 67 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-------------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE
Confidence 78899999999999887666542 2233455433222 2 2344457789999854
No 195
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=93.58 E-value=0.78 Score=38.78 Aligned_cols=97 Identities=14% Similarity=0.247 Sum_probs=63.6
Q ss_pred CcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccce
Q 010286 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPM 131 (513)
Q Consensus 52 ~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PT 131 (513)
+.++++..+... +.++|-|+..-=+ ....+|.++|+.+++ ...|+... +.++..++++ .|+
T Consensus 7 s~~~l~~f~~~~--~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-------d~~F~~~~-----~~~~~~~~~~--~~~ 67 (104)
T cd03069 7 TEAEFEKFLSDD--DASVVGFFEDEDS---KLLSEFLKAADTLRE-------SFRFAHTS-----DKQLLEKYGY--GEG 67 (104)
T ss_pred CHHHHHHHhccC--CcEEEEEEcCCCc---hHHHHHHHHHHhhhh-------cCEEEEEC-----hHHHHHhcCC--CCc
Confidence 345566666543 5567777766433 467788999999863 36776655 3567889988 788
Q ss_pred EEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHh
Q 010286 132 LLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (513)
Q Consensus 132 l~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~ 173 (513)
+.+|+|..+... .+ +....|.|..+.+.|.+||..+
T Consensus 68 ivl~~p~~~~~k-~d-----e~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 68 VVLFRPPRLSNK-FE-----DSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred eEEEechhhhcc-cC-----cccccccCcCCHHHHHHHHHhh
Confidence 988866322110 00 1123478888899999999764
No 196
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=93.54 E-value=0.1 Score=40.95 Aligned_cols=53 Identities=15% Similarity=0.239 Sum_probs=35.5
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccch--hcHHHHHHCCCC-ccceEEE
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKFSVG-HYPMLLW 134 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d--~n~~lc~~f~I~-~~PTl~~ 134 (513)
++.|..+||++|++....+++. .+.+-.+|++.+ .-.++-+..+.. ++|++++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-------------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i 57 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-------------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI 57 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-------------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence 5678899999999988777652 145556676432 123344456766 8998864
No 197
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=93.36 E-value=0.19 Score=39.34 Aligned_cols=52 Identities=13% Similarity=0.219 Sum_probs=34.8
Q ss_pred EEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchh-cHHHHHHCCCCccceEEE
Q 010286 70 VEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI-NTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 70 V~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~-n~~lc~~f~I~~~PTl~~ 134 (513)
+.|..++|++|++....+++. .+.+-.+|.+.+. ..+...+.|...+|++++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-------------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-------------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-------------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 467889999999988777642 2556667764321 122333458889999866
No 198
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=93.22 E-value=0.056 Score=54.08 Aligned_cols=99 Identities=17% Similarity=0.328 Sum_probs=72.9
Q ss_pred HHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEEecCC
Q 010286 59 VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPS 138 (513)
Q Consensus 59 ~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~f~~g 138 (513)
++-.++..++-+.||++|||.-+...|.+.-....+. .+....|+=. -.-..+..+|++.+.|++.+...
T Consensus 70 ~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~--------~i~h~~vee~-~~lpsv~s~~~~~~~ps~~~~n~- 139 (319)
T KOG2640|consen 70 AIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFS--------SIQHFAVEES-QALPSVFSSYGIHSEPSNLMLNQ- 139 (319)
T ss_pred hhccccCCcccccchhcccCcccccCcccchhhhhcc--------ccccccHHHH-hhcccchhccccccCCcceeecc-
Confidence 3333334578899999999999999999998877774 2455555521 23456789999999999987543
Q ss_pred cccCCCCCCccccchhhhccCcCCHHHHHHHHHHhccccCCC
Q 010286 139 KFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSYGL 180 (513)
Q Consensus 139 ~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~~~~~l 180 (513)
.-...|.|.++..+|++|..+.++-.+.+
T Consensus 140 -------------t~~~~~~~~r~l~sLv~fy~~i~~~~v~i 168 (319)
T KOG2640|consen 140 -------------TCPASYRGERDLASLVNFYTEITPMSVLI 168 (319)
T ss_pred -------------ccchhhcccccHHHHHHHHHhhccchhcc
Confidence 12256789999999999999988744443
No 199
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=93.10 E-value=0.29 Score=38.21 Aligned_cols=53 Identities=19% Similarity=0.210 Sum_probs=36.1
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchh-cHHHHHHCCCCccceEEE
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI-NTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~-n~~lc~~f~I~~~PTl~~ 134 (513)
++.|..+||+.|.+..-.+++. .+.+..+|++.+. ...+-+..+...+|.+++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-------------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi 56 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-------------GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------------CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE
Confidence 6789999999999987666642 1445566664333 233444468899999854
No 200
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=92.70 E-value=0.17 Score=39.75 Aligned_cols=53 Identities=9% Similarity=0.185 Sum_probs=37.2
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccch--hcHHHHHHCCCCccceEEE
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d--~n~~lc~~f~I~~~PTl~~ 134 (513)
++.|..+||++|++..-.+++. .+.+-.+|+..+ ...++.+..+-..+|++++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-------------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-------------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-------------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 6789999999999988777752 145566676432 2234666667788999965
No 201
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=91.99 E-value=2.4 Score=35.59 Aligned_cols=95 Identities=11% Similarity=0.186 Sum_probs=62.7
Q ss_pred eec-CcccHHHHHh-cCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCC
Q 010286 49 VEL-NATNFDAVLR-DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (513)
Q Consensus 49 ~~L-~~~~f~~~l~-~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I 126 (513)
..+ +.++++..+. .. ..++|-|+..-=+ ....+|.++|+.+++ ...|+... +.++...+++
T Consensus 3 ~~i~~~~~~e~~~~~~~--~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-------d~~F~~~~-----~~~~~~~~~~ 65 (102)
T cd03066 3 EIINSERELQAFENIED--DIKLIGYFKSEDS---EHYKAFEEAAEEFHP-------YIKFFATF-----DSKVAKKLGL 65 (102)
T ss_pred eEcCCHHHHHHHhcccC--CeEEEEEECCCCC---HHHHHHHHHHHhhhc-------CCEEEEEC-----cHHHHHHcCC
Confidence 344 4456777776 43 4556777765433 456678999999863 35676544 3567788877
Q ss_pred CccceEEEecCCcccCCCCCCccccchhhhc-cCcCCHHHHHHHHHHh
Q 010286 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRAL-EDWQTADGLLTWINKQ 173 (513)
Q Consensus 127 ~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~-~g~~~~e~L~~~i~~~ 173 (513)
. .|++.++++.. +....| .|..+.+.|.+||...
T Consensus 66 ~-~~~i~l~~~~~------------e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 66 K-MNEVDFYEPFM------------EEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred C-CCcEEEeCCCC------------CCCcccCCCCCCHHHHHHHHHHh
Confidence 5 79999986521 111346 6778999999999753
No 202
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=91.74 E-value=1.1 Score=41.04 Aligned_cols=63 Identities=13% Similarity=0.284 Sum_probs=45.3
Q ss_pred HhcCCCCeEEEEEe-cCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-------------------hhcHH
Q 010286 60 LRDTPATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------KINTN 119 (513)
Q Consensus 60 l~~~~~~~vLV~Fy-A~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-------------------d~n~~ 119 (513)
+.+.++++||++|| ..++|-|-..+=.|.....++++.+ ..+..|..+. |.+.+
T Consensus 25 Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~------a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~ 98 (157)
T COG1225 25 LSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG------AVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGE 98 (157)
T ss_pred hHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC------CEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHH
Confidence 34445678999999 6889999999999999999987533 4555555432 44566
Q ss_pred HHHHCCCCc
Q 010286 120 LCDKFSVGH 128 (513)
Q Consensus 120 lc~~f~I~~ 128 (513)
+|+.|||-.
T Consensus 99 v~~~ygv~~ 107 (157)
T COG1225 99 VAEAYGVWG 107 (157)
T ss_pred HHHHhCccc
Confidence 777777643
No 203
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=91.01 E-value=0.47 Score=43.30 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=41.4
Q ss_pred CeEEEEEe-cCCCHHHhhh-hHHHHHHHHHhCCCCCCCCCeE-EEEEEeccc-hhcHHHHHHCCC-Cccc
Q 010286 66 TYAVVEFF-ANWCPACRNY-KPQYEKVARLFNGPNAAHPGII-LMTRVDCAL-KINTNLCDKFSV-GHYP 130 (513)
Q Consensus 66 ~~vLV~Fy-A~WCg~Ck~~-~P~~~~lA~~~~~~~~~~~~~v-~~~~VDc~~-d~n~~lc~~f~I-~~~P 130 (513)
+++++.|| +.||+.|... .+.|.+...++.+.+ + .++.|.++. ....+.++++++ ..+|
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g------~~~V~~iS~D~~~~~~~~~~~~~~~~~f~ 93 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG------VDEVICVSVNDPFVMKAWGKALGAKDKIR 93 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC------CCEEEEEECCCHHHHHHHHHhhCCCCcEE
Confidence 45566665 8999999999 999999999997532 3 356666533 334557888887 2455
No 204
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=90.92 E-value=0.95 Score=44.09 Aligned_cols=54 Identities=15% Similarity=0.195 Sum_probs=43.9
Q ss_pred cccCcceecCcccHHHHHh-cCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCC
Q 010286 43 VEVDHAVELNATNFDAVLR-DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNG 96 (513)
Q Consensus 43 ~~~~~v~~L~~~~f~~~l~-~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~ 96 (513)
+++..|+.+++.+...++. ...+.|.+|+|-+-.||+=+.-.+.|++++++|.+
T Consensus 79 APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d 133 (237)
T PF00837_consen 79 APNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD 133 (237)
T ss_pred CCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh
Confidence 6778899999888444432 22358999999999999999999999999999874
No 205
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=90.64 E-value=0.41 Score=39.37 Aligned_cols=47 Identities=13% Similarity=0.161 Sum_probs=30.6
Q ss_pred CCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccch--hcHHHHHHCCCCccceEEE
Q 010286 75 NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 75 ~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d--~n~~lc~~f~I~~~PTl~~ 134 (513)
|||++|++..-.+++.. +.+..+|+..+ ....+.+..|-+.+|++++
T Consensus 21 ~~Cp~C~~ak~~L~~~~-------------i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi 69 (90)
T cd03028 21 PRCGFSRKVVQILNQLG-------------VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV 69 (90)
T ss_pred CCCcHHHHHHHHHHHcC-------------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 79999999887776642 34555565322 1234455568889999854
No 206
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=90.00 E-value=0.57 Score=39.24 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=30.8
Q ss_pred CCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccch--hcHHHHHHCCCCccceEEE
Q 010286 75 NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 75 ~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d--~n~~lc~~f~I~~~PTl~~ 134 (513)
||||+|++..-.+++.. +.+..+|...+ ....+.+..|-..+|.+++
T Consensus 25 ~~Cp~C~~ak~lL~~~~-------------i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 25 PQCGFSARAVQILKACG-------------VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred CCCchHHHHHHHHHHcC-------------CCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 89999999887776532 34556676321 1234455567788999865
No 207
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.99 E-value=4.3 Score=39.58 Aligned_cols=47 Identities=32% Similarity=0.413 Sum_probs=30.8
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHh
Q 010286 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLF 94 (513)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~ 94 (513)
+..++.+.-.-++.+......+++|+..-||+|+...|.+++.....
T Consensus 67 ~~~~~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~ 113 (244)
T COG1651 67 VLYLTPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDD 113 (244)
T ss_pred eeeecCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhc
Confidence 44454444444444444467899999999999988888777744443
No 208
>PRK10638 glutaredoxin 3; Provisional
Probab=89.89 E-value=0.48 Score=38.18 Aligned_cols=53 Identities=11% Similarity=0.217 Sum_probs=35.8
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchh--cHHHHHHCCCCccceEEE
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~--n~~lc~~f~I~~~PTl~~ 134 (513)
++.|..+||++|++..-.+++.. +.+..+|++.+. ..++.+..+...+|++++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~g-------------i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKG-------------VSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-------------CCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 56778899999999887777531 344556664321 234556668888998855
No 209
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=89.82 E-value=1.8 Score=40.83 Aligned_cols=108 Identities=11% Similarity=0.225 Sum_probs=73.5
Q ss_pred cCcceecCcccHHHHH-hcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHH
Q 010286 45 VDHAVELNATNFDAVL-RDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDK 123 (513)
Q Consensus 45 ~~~v~~L~~~~f~~~l-~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~ 123 (513)
-..|..++...|-..| ..+.+-||+|..|...-+.|+-+.-.++.+|..|.. ++|+++=.+. -.-.
T Consensus 90 fG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--------iKFVki~at~-----cIpN 156 (240)
T KOG3170|consen 90 FGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--------IKFVKIPATT-----CIPN 156 (240)
T ss_pred ccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--------ceEEeccccc-----ccCC
Confidence 3458888888887755 455577999999999999999999999999999963 6666654211 1123
Q ss_pred CCCCccceEEEecCCcccCCCCCCccccchhhhccCc-CCHHHHHHHHHH
Q 010286 124 FSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW-QTADGLLTWINK 172 (513)
Q Consensus 124 f~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~-~~~e~L~~~i~~ 172 (513)
|-=...|||++|..|.+...-+ .+..+.|. .+.+++..++-+
T Consensus 157 YPe~nlPTl~VY~~G~lk~q~i-------gll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 157 YPESNLPTLLVYHHGALKKQMI-------GLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred CcccCCCeEEEeecchHHhhee-------hhhhhcCCcCCHHHHHHHHHh
Confidence 5556789999999886653211 11223333 456666665543
No 210
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=89.79 E-value=1.2 Score=41.59 Aligned_cols=25 Identities=20% Similarity=0.597 Sum_probs=20.9
Q ss_pred EEecCCCHHHhhhhHHHHHHHHHhC
Q 010286 71 EFFANWCPACRNYKPQYEKVARLFN 95 (513)
Q Consensus 71 ~FyA~WCg~Ck~~~P~~~~lA~~~~ 95 (513)
.|..|.|+.|-.+.|.+.++...+.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~ 26 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYG 26 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcC
Confidence 5889999999999999999999986
No 211
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=89.44 E-value=2.2 Score=47.31 Aligned_cols=97 Identities=7% Similarity=0.036 Sum_probs=69.4
Q ss_pred HHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEEe
Q 010286 56 FDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWG 135 (513)
Q Consensus 56 f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~f 135 (513)
++..+.+-.+...|+.|+.+-|..|..+...+++++.. . ++|.+-..|. .++.+++.+|+|...|++.++
T Consensus 357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~-s-------~~i~~~~~~~--~~~~~~~~~~~v~~~P~~~i~ 426 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASL-S-------EKLNSEAVNR--GEEPESETLPKITKLPTVALL 426 (555)
T ss_pred HHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhc-C-------CcEEEEEecc--ccchhhHhhcCCCcCCEEEEE
Confidence 45555555545568888898999999998888888754 2 4588888886 357889999999999999997
Q ss_pred c-CCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhc
Q 010286 136 S-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (513)
Q Consensus 136 ~-~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l 174 (513)
. +|+.. . .+|.|-..=.++..||...+
T Consensus 427 ~~~~~~~-----------~-i~f~g~P~G~Ef~s~i~~i~ 454 (555)
T TIGR03143 427 DDDGNYT-----------G-LKFHGVPSGHELNSFILALY 454 (555)
T ss_pred eCCCccc-----------c-eEEEecCccHhHHHHHHHHH
Confidence 4 33110 1 34666666667777776655
No 212
>PRK10824 glutaredoxin-4; Provisional
Probab=89.02 E-value=1.1 Score=39.00 Aligned_cols=31 Identities=3% Similarity=0.105 Sum_probs=21.4
Q ss_pred HHHHHhcCCCCeEEEEEec-----CCCHHHhhhhHHHHHH
Q 010286 56 FDAVLRDTPATYAVVEFFA-----NWCPACRNYKPQYEKV 90 (513)
Q Consensus 56 f~~~l~~~~~~~vLV~FyA-----~WCg~Ck~~~P~~~~l 90 (513)
.++.+.++ + +|.|-. ||||+|++..-.++++
T Consensus 8 v~~~I~~~---~-Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 8 IQRQIAEN---P-ILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred HHHHHhcC---C-EEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 44556553 3 455655 5999999988877765
No 213
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=88.82 E-value=1.2 Score=35.89 Aligned_cols=53 Identities=13% Similarity=0.231 Sum_probs=35.6
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchh--c-HHHHHHC-CCCccceEEE
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--N-TNLCDKF-SVGHYPMLLW 134 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~--n-~~lc~~f-~I~~~PTl~~ 134 (513)
++.|.-++||+|++....+.+. .+.+..+|.+.+. . .+..++- |.+.+|+|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-------------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-------------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-------------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 5778899999999987776632 2455555654333 1 2334444 7899999987
No 214
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=88.43 E-value=0.49 Score=45.31 Aligned_cols=30 Identities=30% Similarity=0.783 Sum_probs=25.4
Q ss_pred CeEEEEEecCCCHHHhhhhHHH---HHHHHHhC
Q 010286 66 TYAVVEFFANWCPACRNYKPQY---EKVARLFN 95 (513)
Q Consensus 66 ~~vLV~FyA~WCg~Ck~~~P~~---~~lA~~~~ 95 (513)
++.+|+|+.--||||+++.|.+ +.+.+.+.
T Consensus 38 ~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~ 70 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLP 70 (207)
T ss_pred CCeEEEEeCCCCccHHHhcccccchHHHHHhCC
Confidence 4569999999999999999976 77777764
No 215
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=88.38 E-value=1.5 Score=37.25 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=43.7
Q ss_pred cHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHH----HCCCCccc
Q 010286 55 NFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCD----KFSVGHYP 130 (513)
Q Consensus 55 ~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~----~f~I~~~P 130 (513)
.++.++..+ + +|.|.-+||+.|++..-.|.+ +. ....+..+|-. +...++-+ --+-+.+|
T Consensus 6 ~v~~~i~~~---~-VVifSKs~C~~c~~~k~ll~~----~~-------v~~~vvELD~~-~~g~eiq~~l~~~tg~~tvP 69 (104)
T KOG1752|consen 6 KVRKMISEN---P-VVIFSKSSCPYCHRAKELLSD----LG-------VNPKVVELDED-EDGSEIQKALKKLTGQRTVP 69 (104)
T ss_pred HHHHHhhcC---C-EEEEECCcCchHHHHHHHHHh----CC-------CCCEEEEccCC-CCcHHHHHHHHHhcCCCCCC
Confidence 355666663 3 788999999999997766665 32 23567777743 22334333 33456888
Q ss_pred eEEEecCCcccC
Q 010286 131 MLLWGSPSKFVA 142 (513)
Q Consensus 131 Tl~~f~~g~~~~ 142 (513)
.+++ .|++.+
T Consensus 70 ~vFI--~Gk~iG 79 (104)
T KOG1752|consen 70 NVFI--GGKFIG 79 (104)
T ss_pred EEEE--CCEEEc
Confidence 8876 455543
No 216
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=86.83 E-value=11 Score=37.16 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=28.7
Q ss_pred CCCCeEEEEEecCCCHH-HhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEec
Q 010286 63 TPATYAVVEFFANWCPA-CRNYKPQYEKVARLFNGPNAAHPGIILMTRVDC 112 (513)
Q Consensus 63 ~~~~~vLV~FyA~WCg~-Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc 112 (513)
-.++|+|++|-=+.||. |=.....+.++-+++..... -+..-.|+.||-
T Consensus 137 f~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~-~~~~PlFIsvDP 186 (280)
T KOG2792|consen 137 FLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPG-LPPVPLFISVDP 186 (280)
T ss_pred cccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCC-CCccceEEEeCc
Confidence 34799999999998874 65554444444444443221 111236777775
No 217
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=85.46 E-value=6.9 Score=33.27 Aligned_cols=99 Identities=15% Similarity=0.205 Sum_probs=61.0
Q ss_pred CcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccce
Q 010286 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPM 131 (513)
Q Consensus 52 ~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PT 131 (513)
+.++++..+.... ..++|-|+..-=+ .....|.++|..+++ ...|+... +.++..++++. .|+
T Consensus 7 s~~ele~f~~~~~-~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd-------d~~F~~t~-----~~~~~~~~~~~-~~~ 69 (107)
T cd03068 7 TLKQVQEFLRDGD-DVIIIGVFSGEED---PAYQLYQDAANSLRE-------DYKFHHTF-----DSEIFKSLKVS-PGQ 69 (107)
T ss_pred CHHHHHHHHhcCC-CEEEEEEECCCCC---HHHHHHHHHHHhccc-------CCEEEEEC-----hHHHHHhcCCC-CCc
Confidence 3455677665531 3456667765433 456678899999863 36776655 35677888886 577
Q ss_pred EEEecCCcccCCCCCCccccchhhhccCc-CCHHH-HHHHHHHh
Q 010286 132 LLWGSPSKFVAGSWEPNQEKKEIRALEDW-QTADG-LLTWINKQ 173 (513)
Q Consensus 132 l~~f~~g~~~~~~~~~~~~~~~v~~~~g~-~~~e~-L~~~i~~~ 173 (513)
+.+|.|..+... .+ +....|.|. .+.++ |..||.++
T Consensus 70 vvl~rp~~~~~k-~e-----~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 70 LVVFQPEKFQSK-YE-----PKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred eEEECcHHHhhh-cC-----cceeeeeccccchHHHHHHHHhcC
Confidence 888876544321 11 122346666 56655 99999753
No 218
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=83.24 E-value=6.6 Score=35.01 Aligned_cols=74 Identities=11% Similarity=0.172 Sum_probs=47.7
Q ss_pred EEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCC----ccceEEEecCCcccCC
Q 010286 68 AVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG----HYPMLLWGSPSKFVAG 143 (513)
Q Consensus 68 vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~----~~PTl~~f~~g~~~~~ 143 (513)
-++.|++|.||-|......++ ++- +.+-.+.. ++-..+-++++|. +-=|..+ +|
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk--~~G-----------f~Vk~~~~--~d~~alK~~~gIp~e~~SCHT~VI--~G----- 84 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMK--ANG-----------FEVKVVET--DDFLALKRRLGIPYEMQSCHTAVI--NG----- 84 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHH--hCC-----------cEEEEeec--CcHHHHHHhcCCChhhccccEEEE--cC-----
Confidence 378899999999998776665 222 44444443 2345566777774 3445544 22
Q ss_pred CCCCccccchhhhccCcCCHHHHHHHHHHhc
Q 010286 144 SWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (513)
Q Consensus 144 ~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l 174 (513)
..++|...+++|..++++.-
T Consensus 85 -----------y~vEGHVPa~aI~~ll~~~p 104 (149)
T COG3019 85 -----------YYVEGHVPAEAIARLLAEKP 104 (149)
T ss_pred -----------EEEeccCCHHHHHHHHhCCC
Confidence 23567888999999887653
No 219
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=81.77 E-value=2.6 Score=44.91 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=35.1
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhc-HHHHHH---------CCCCccceEEE
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKIN-TNLCDK---------FSVGHYPMLLW 134 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n-~~lc~~---------f~I~~~PTl~~ 134 (513)
++.|..||||+|++..-.+++. +|.+-.||++.+.. .++-.+ .|.+.+|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-------------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-------------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6789999999999987666652 25566777753221 122122 47788999976
No 220
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=74.18 E-value=9.5 Score=42.62 Aligned_cols=79 Identities=13% Similarity=0.268 Sum_probs=55.3
Q ss_pred ecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHH-H--HHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHC--
Q 010286 50 ELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQ-Y--EKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF-- 124 (513)
Q Consensus 50 ~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~-~--~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f-- 124 (513)
.-.++.|+..-.. ++|+||..-.+||.-|+-|+.+ | .++|+.+++ .++-++||- |+-+++-+-|
T Consensus 30 pW~~eAf~~A~~e--dkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~-------~FV~IKVDR--EERPDvD~~Ym~ 98 (667)
T COG1331 30 PWGEEAFAKAKEE--DKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE-------NFVPVKVDR--EERPDVDSLYMN 98 (667)
T ss_pred ccCHHHHHHHHHh--CCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh-------CceeeeECh--hhccCHHHHHHH
Confidence 3456778876655 5899999999999999999864 3 567887763 467778884 5555544433
Q ss_pred -----C-CCccc-eEEEecCCc
Q 010286 125 -----S-VGHYP-MLLWGSPSK 139 (513)
Q Consensus 125 -----~-I~~~P-Tl~~f~~g~ 139 (513)
. --|.| |+++-|+|+
T Consensus 99 ~~q~~tG~GGWPLtVfLTPd~k 120 (667)
T COG1331 99 ASQAITGQGGWPLTVFLTPDGK 120 (667)
T ss_pred HHHHhccCCCCceeEEECCCCc
Confidence 3 34799 666656665
No 221
>PTZ00062 glutaredoxin; Provisional
Probab=72.35 E-value=7.3 Score=37.34 Aligned_cols=47 Identities=11% Similarity=0.029 Sum_probs=29.2
Q ss_pred CCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhc--HHHHHHCCCCccceEEE
Q 010286 75 NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKIN--TNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 75 ~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n--~~lc~~f~I~~~PTl~~ 134 (513)
|+||.|++..-.+++. .+.+..+|...+.. ..+-+.-+-..+|.+++
T Consensus 126 p~C~~C~~~k~~L~~~-------------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSS-------------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred CCChhHHHHHHHHHHc-------------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence 7999999987777643 14556677643221 22333346677888875
No 222
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=71.92 E-value=8.8 Score=35.62 Aligned_cols=71 Identities=10% Similarity=0.212 Sum_probs=43.6
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCC-HHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchh-cHHHHHHC
Q 010286 48 AVELNATNFDAVLRDTPATYAVVEFFANWC-PACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI-NTNLCDKF 124 (513)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vLV~FyA~WC-g~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~-n~~lc~~f 124 (513)
.+.-++..+. ..+.+++++||.|.=+-| ..|-.....+.++.+.+.+.+ ..+.+..|.++-+. .++..++|
T Consensus 37 L~d~~G~~~~--~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~----~~v~~v~ISvDP~~DTp~~L~~Y 109 (174)
T PF02630_consen 37 LTDQDGKTVT--LDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEG----KDVQFVFISVDPERDTPEVLKKY 109 (174)
T ss_dssp EEETTSSEEE--GGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTT----TTEEEEEEESSTTTC-HHHHHHH
T ss_pred EEcCCCCEec--HHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhcc----CceEEEEEEeCCCCCCHHHHHHH
Confidence 3333444444 233346899999999999 579888888888888876432 24666666654322 34555554
No 223
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=67.07 E-value=33 Score=29.51 Aligned_cols=45 Identities=13% Similarity=0.315 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEEecC
Q 010286 82 NYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSP 137 (513)
Q Consensus 82 ~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~f~~ 137 (513)
.+.++.+.+.+...+.+ .. ..|.+ |+.+.++|+|+.+||+++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~----~~---~~v~I----dP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDD----PC---PGVQI----DPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccC----CC---cceeE----ChhHHhhCCceEcCEEEEEcC
Confidence 78888888877776432 11 23332 588999999999999999766
No 224
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=64.94 E-value=6.8 Score=26.81 Aligned_cols=27 Identities=15% Similarity=0.372 Sum_probs=14.1
Q ss_pred HHHHHHHHHHH--hhhhHHHHHHHHHhhh
Q 010286 479 VGAALAIALAS--CAFGALACYWRSQQKN 505 (513)
Q Consensus 479 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 505 (513)
|-++|.+.++- ..+-.-+||+|+++.+
T Consensus 8 IIv~V~vg~~iiii~~~~YaCcykk~~~~ 36 (38)
T PF02439_consen 8 IIVAVVVGMAIIIICMFYYACCYKKHRRQ 36 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 44444444444 3444556887666543
No 225
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=64.54 E-value=85 Score=28.06 Aligned_cols=94 Identities=10% Similarity=0.108 Sum_probs=60.5
Q ss_pred CCeEEEEEecCCCHHHhhhhHHH---HHHHHHhCCCCCCCCCeEEEEEEeccchhcHH----------------HHHHCC
Q 010286 65 ATYAVVEFFANWCPACRNYKPQY---EKVARLFNGPNAAHPGIILMTRVDCALKINTN----------------LCDKFS 125 (513)
Q Consensus 65 ~~~vLV~FyA~WCg~Ck~~~P~~---~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~----------------lc~~f~ 125 (513)
.|+.+|+..++--..+..|--.. +.+.+-++ +++.+-.-|.+.++|.+ ..+.++
T Consensus 21 ~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~-------~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~ 93 (136)
T cd02990 21 RKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS-------QNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIK 93 (136)
T ss_pred cceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH-------cCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcC
Confidence 58889999988764333333222 23334443 24777788887665442 566788
Q ss_pred CCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhc
Q 010286 126 VGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (513)
Q Consensus 126 I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l 174 (513)
...||.+.+.-... + .-..+.++.|..+.+++++-+.+.+
T Consensus 94 ~~~fP~~avI~~~~--~-------~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 94 TDQLPAILIIMGKR--S-------SNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred cCCCCeEEEEEecC--C-------ceEEEEEEECCCCHHHHHHHHHHHH
Confidence 99999988763321 0 1155677899999999988776543
No 226
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=64.11 E-value=5.2 Score=36.30 Aligned_cols=17 Identities=18% Similarity=0.552 Sum_probs=14.2
Q ss_pred CChHHHHHHHHHHhCCC
Q 010286 429 WDQDEVFKFLTNYYGNT 445 (513)
Q Consensus 429 w~e~~V~~fL~~~Y~~~ 445 (513)
.++++|.+|+.+.||..
T Consensus 74 ~s~~eI~~~~v~rYG~~ 90 (148)
T PF03918_consen 74 KSDEEIIDYFVERYGEF 90 (148)
T ss_dssp --HHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHhcCcc
Confidence 78899999999999986
No 227
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=63.16 E-value=76 Score=30.38 Aligned_cols=67 Identities=15% Similarity=0.280 Sum_probs=45.1
Q ss_pred CCCeEEEEEecCCCH-HHhhhhHHHHHHHHHhC-CCCCCCCCeEEEEEEeccchhcHHHHHHCCC-CccceEE
Q 010286 64 PATYAVVEFFANWCP-ACRNYKPQYEKVARLFN-GPNAAHPGIILMTRVDCALKINTNLCDKFSV-GHYPMLL 133 (513)
Q Consensus 64 ~~~~vLV~FyA~WCg-~Ck~~~P~~~~lA~~~~-~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I-~~~PTl~ 133 (513)
++++++|.|.=+.|+ -|-.....+.++.+.+. +... .=.+.++.||-..| .++..++|.. ...|-+.
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~--~v~vv~itvDPerD-tp~~lk~Y~~~~~~~~~~ 135 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGD--DVQVVFITVDPERD-TPEVLKKYAELNFDPRWI 135 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCC--CEEEEEEEECCCCC-CHHHHHHHhcccCCCCee
Confidence 468999999878885 59888888888888886 3221 11245566665433 4778888887 5555444
No 228
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=62.42 E-value=17 Score=32.08 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=15.6
Q ss_pred CChHHHHHHHHHHhCCC
Q 010286 429 WDQDEVFKFLTNYYGNT 445 (513)
Q Consensus 429 w~e~~V~~fL~~~Y~~~ 445 (513)
.+++||..||+..||.-
T Consensus 74 ~sd~eI~~~~v~RYG~~ 90 (126)
T PRK10144 74 KSEVEIIGWMTERYGDF 90 (126)
T ss_pred CCHHHHHHHHHHhcCCe
Confidence 77899999999999985
No 229
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=60.15 E-value=16 Score=27.96 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=33.5
Q ss_pred EEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEE
Q 010286 70 VEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 70 V~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~ 134 (513)
+.|+.+||+.|++..-.+++..-. +.+..||.. +...++.+......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~-----------~e~~~v~~~-~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGIT-----------VELREVELK-NKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCC-----------cEEEEeCCC-CCCHHHHHHCCCCCCCEEEE
Confidence 357789999999876555443222 345566653 23345656667778999964
No 230
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=58.68 E-value=44 Score=31.69 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=30.8
Q ss_pred CCeEEEEEe-cCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecc
Q 010286 65 ATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA 113 (513)
Q Consensus 65 ~~~vLV~Fy-A~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~ 113 (513)
++|+++.|| +..-+-|--....+.+...++++.+ +.++.|.++
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g------~eVigvS~D 76 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG------VEVIGVSTD 76 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC------CEEEEEecC
Confidence 477777777 6777888888888888888887643 555555554
No 231
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=55.47 E-value=17 Score=30.33 Aligned_cols=18 Identities=39% Similarity=0.528 Sum_probs=8.3
Q ss_pred CCchhHHHHHHHHHHHHH
Q 010286 1 MSRRPAILIVNLLLCLLL 18 (513)
Q Consensus 1 M~~~~~~l~~~ll~lll~ 18 (513)
|..|.++++.++|+++++
T Consensus 1 MaSK~~llL~l~LA~lLl 18 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLL 18 (95)
T ss_pred CchhHHHHHHHHHHHHHH
Confidence 665554444434333333
No 232
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=55.23 E-value=29 Score=31.39 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=33.5
Q ss_pred EEEEecC------CCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccch--hcHHHHHHCCC----CccceEEE
Q 010286 69 VVEFFAN------WCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKFSV----GHYPMLLW 134 (513)
Q Consensus 69 LV~FyA~------WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d--~n~~lc~~f~I----~~~PTl~~ 134 (513)
+|.|+.+ +|++|++..-.++.+ .|.+-.+|.+.+ ...+|-+..+- ..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-------------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-------------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-------------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4556666 899999988777653 155667776422 12345444454 57888865
No 233
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=54.84 E-value=25 Score=31.03 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=15.7
Q ss_pred CChHHHHHHHHHHhCCC
Q 010286 429 WDQDEVFKFLTNYYGNT 445 (513)
Q Consensus 429 w~e~~V~~fL~~~Y~~~ 445 (513)
.+++||.+||++.||.-
T Consensus 74 ~Sd~eI~~~~v~RYG~~ 90 (126)
T TIGR03147 74 KSNQQIIDFMTARFGDF 90 (126)
T ss_pred CCHHHHHHHHHHhcCCe
Confidence 78899999999999985
No 234
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=54.22 E-value=98 Score=23.76 Aligned_cols=76 Identities=12% Similarity=0.141 Sum_probs=41.1
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEEecCCcccCCCCCCc
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPN 148 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~f~~g~~~~~~~~~~ 148 (513)
+..|+.+.|+.|++.+-.+....-. ..+..+|. ....++ ..-+-..+|++..-..| ++
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~-----------y~~~~~~~--~~~~~~-~~~~~~~vP~l~~~~~~---~~----- 59 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIP-----------YEVVEVNP--VSRKEI-KWSSYKKVPILRVESGG---DG----- 59 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCc-----------eEEEECCc--hhHHHH-HHhCCCccCEEEECCCC---Cc-----
Confidence 4567889999999987554443222 22223332 122233 34456689998752110 00
Q ss_pred cccchhhhccCcCCHHHHHHHHHHhcc
Q 010286 149 QEKKEIRALEDWQTADGLLTWINKQTS 175 (513)
Q Consensus 149 ~~~~~v~~~~g~~~~e~L~~~i~~~l~ 175 (513)
. . -.+...|.++|++++|
T Consensus 60 ---~---~---l~eS~~I~~yL~~~~~ 77 (77)
T cd03040 60 ---Q---Q---LVDSSVIISTLKTYLG 77 (77)
T ss_pred ---c---E---EEcHHHHHHHHHHHcC
Confidence 0 0 1346778888887764
No 235
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=52.77 E-value=56 Score=28.99 Aligned_cols=78 Identities=10% Similarity=0.184 Sum_probs=45.6
Q ss_pred hhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEEecCCcccCCCCCCccccchhhhccCcC
Q 010286 82 NYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQ 161 (513)
Q Consensus 82 ~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~ 161 (513)
.+.++.+.+.+...+.+ . +.|.+ |+.+.++|+|+.+|++++.+++..-.+. .+. .........|..
T Consensus 37 ~~~~T~~~i~~L~~~~~-----~---~~v~I----dP~lF~~f~I~~VPa~V~~~~~~~c~~~-~~~-~~~~~d~v~Gdv 102 (130)
T TIGR02742 37 GFKATATRIQSLIKDGG-----K---SGVQI----DPQWFKQFDITAVPAFVVVKDGLACLPE-QPC-PESDYDVVYGNV 102 (130)
T ss_pred CHHHHHHHHHHHHhcCC-----C---CcEEE----ChHHHhhcCceEcCEEEEECCCCccccc-CCC-CCCCeeEEEecc
Confidence 46667777666554321 1 23332 4889999999999999998765311110 110 112234556777
Q ss_pred CHHHHHHHHHHh
Q 010286 162 TADGLLTWINKQ 173 (513)
Q Consensus 162 ~~e~L~~~i~~~ 173 (513)
+.+.-++.|.+.
T Consensus 103 sl~~ALe~ia~~ 114 (130)
T TIGR02742 103 SLKGALEKMAQD 114 (130)
T ss_pred cHHHHHHHHHHh
Confidence 776666666543
No 236
>PF09049 SNN_transmemb: Stannin transmembrane; InterPro: IPR015135 This region consists of a single highly hydrophobic transmembrane helix that transverses the lipid bilayer at a 20 degree angle with respect to the membrane normal. It contains a conserved cysteine residue (Cys32) that, together with Cys34 found in the stannin unstructured linker domain, constitutes the putative trimethyltin-binding site that resides at the end of the transmembrane domain close to the lipid/solvent interface []. ; PDB: 1ZZA_A.
Probab=50.90 E-value=17 Score=23.39 Aligned_cols=28 Identities=39% Similarity=0.576 Sum_probs=12.3
Q ss_pred cccccccccceeeeHHHHHHHHHHHhhhhHHHH
Q 010286 465 LEDLVVSTNAVVVPVGAALAIALASCAFGALAC 497 (513)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (513)
+.|++.++- ||+|+. |++|-.+.|+|.|
T Consensus 3 i~dhspttg--vvti~v---iliavaalg~lic 30 (33)
T PF09049_consen 3 ITDHSPTTG--VVTIIV---ILIAVAALGALIC 30 (33)
T ss_dssp S-TTTTHHH--HHHHHH---HHHHHHHHHHHHH
T ss_pred cccCCCCcc--EEEehh---HHHHHHHHhhhhe
Confidence 445544433 344543 3444444555544
No 237
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=50.66 E-value=59 Score=25.74 Aligned_cols=59 Identities=14% Similarity=0.193 Sum_probs=43.9
Q ss_pred EEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEE
Q 010286 68 AVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 68 vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~ 134 (513)
.|..|-+.--+..++..-.++++-+++.+ +...+-.||.. ++++++..++|-.+||++-
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~------~~~~LeVIDv~--~~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLG------GPYELEVIDVL--KQPQLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcC------CcEEEEEEEcc--cCHhHHhhCCEEEechhhh
Confidence 34455555557777777777777666642 56888889974 6899999999999999864
No 238
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=50.49 E-value=2.9 Score=28.31 Aligned_cols=16 Identities=25% Similarity=0.968 Sum_probs=10.4
Q ss_pred CCCCCCCCCChhhhcc
Q 010286 401 KIIWPPKQLCSSCYRS 416 (513)
Q Consensus 401 k~~~P~~~~Cp~C~~~ 416 (513)
.++|||...||.|+..
T Consensus 19 ~~~~pPr~~Cp~C~s~ 34 (37)
T PF12172_consen 19 RVQFPPRPVCPHCGSD 34 (37)
T ss_dssp -EEES--SEETTTT--
T ss_pred CEecCCCcCCCCcCcc
Confidence 6899999999999743
No 239
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=49.49 E-value=17 Score=25.28 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=16.9
Q ss_pred HHHHHhhhhHHHHHHHHHhhhcC
Q 010286 485 IALASCAFGALACYWRSQQKNRK 507 (513)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~ 507 (513)
+.++.|++-++..| |+-|.|++
T Consensus 17 Vglv~i~iva~~iY-RKw~aRkr 38 (43)
T PF08114_consen 17 VGLVGIGIVALFIY-RKWQARKR 38 (43)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHH
Confidence 57788888888888 77777654
No 240
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=48.03 E-value=49 Score=25.76 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=29.0
Q ss_pred EEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchh--cHHHHHHCCCCccceEEE
Q 010286 70 VEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 70 V~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~--n~~lc~~f~I~~~PTl~~ 134 (513)
..|+.++|+.|++.+-.+++.. +.+-.+|+.... ..++-+..+-..+|++..
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~g-------------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~ 56 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELE-------------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD 56 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcC-------------CcEEEEECCCChHHHHHHHHhCCCCcccEEEe
Confidence 4567789999998765555432 222223432221 234444445568899864
No 241
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=44.57 E-value=37 Score=25.62 Aligned_cols=54 Identities=17% Similarity=0.128 Sum_probs=32.2
Q ss_pred EEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc--hhcHHHHHHCCCCccceEEE
Q 010286 70 VEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL--KINTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 70 V~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~--d~n~~lc~~f~I~~~PTl~~ 134 (513)
..|+.++|+.|++..-.++...-. .....+|... ....++-+...-..+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~-----------~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID-----------VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC-----------ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 357788999999987766654222 2233454321 12234555556668899864
No 242
>PHA03075 glutaredoxin-like protein; Provisional
Probab=44.28 E-value=33 Score=29.68 Aligned_cols=30 Identities=10% Similarity=0.361 Sum_probs=25.8
Q ss_pred CeEEEEEecCCCHHHhhhhHHHHHHHHHhC
Q 010286 66 TYAVVEFFANWCPACRNYKPQYEKVARLFN 95 (513)
Q Consensus 66 ~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~ 95 (513)
+.+|+.|--|-|+-|+.....++++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 347999999999999999999988877763
No 243
>PRK09301 circadian clock protein KaiB; Provisional
Probab=43.11 E-value=78 Score=26.87 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=49.5
Q ss_pred CCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEE
Q 010286 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 65 ~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~ 134 (513)
..++|=.|.|.--+..++..-.+.++-+.+.. +...+=.||.. ++++++..++|-.+||++-
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~------g~y~LeVIDv~--~qPelAE~~~IvATPTLIK 66 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFK------GVYALKVIDVL--KNPQLAEEDKILATPTLAK 66 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcC------CceEEEEEEcc--cCHhHHhHCCeEEecHHhh
Confidence 35678888888888888888888887666543 45788888974 6899999999999999864
No 244
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=42.65 E-value=12 Score=26.02 Aligned_cols=14 Identities=43% Similarity=0.698 Sum_probs=9.6
Q ss_pred cceeeeHHHHHHHH
Q 010286 473 NAVVVPVGAALAIA 486 (513)
Q Consensus 473 ~~~~~~~~~~~~~~ 486 (513)
-+|++|++..++++
T Consensus 15 ~~VvVPV~vI~~vl 28 (40)
T PF08693_consen 15 VGVVVPVGVIIIVL 28 (40)
T ss_pred EEEEechHHHHHHH
Confidence 46788888766443
No 245
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=42.63 E-value=84 Score=25.83 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=48.0
Q ss_pred CeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEE
Q 010286 66 TYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 66 ~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~ 134 (513)
.++|=.|.|.--+..++..-.+.++-+.+.. +...+=.||.. +++++++.++|-.+||++=
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~------g~y~LeVIDv~--~qP~lAE~~~IvATPtLIK 63 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQ------GVYALKVIDVL--KNPQLAEEDKILATPTLSK 63 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcC------CceEEEEEEcc--cCHhHHhHCCEEEecHHhh
Confidence 4566777788888888887788877666542 45788888974 6899999999999999864
No 246
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=42.30 E-value=37 Score=24.67 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=30.9
Q ss_pred EEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEE
Q 010286 71 EFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 71 ~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~ 134 (513)
.|+.++|+.|++..-.++...-. +.+..++-..+...++-...+-..+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~-----------~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP-----------YELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC-----------cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 47788999999877666554222 233444432111112444566778898875
No 247
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=40.80 E-value=41 Score=30.97 Aligned_cols=38 Identities=16% Similarity=0.051 Sum_probs=27.7
Q ss_pred hcHHHHHHCCCCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHH
Q 010286 116 INTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (513)
Q Consensus 116 ~n~~lc~~f~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i 170 (513)
++.+.+.++||.|+||+++ +|+ ..+.|....+.|.+.|
T Consensus 155 ~~~~~a~~~gv~GvP~~vv--~g~---------------~~~~G~~~~~~l~~~l 192 (193)
T PF01323_consen 155 EDTAEARQLGVFGVPTFVV--NGK---------------YRFFGADRLDELEDAL 192 (193)
T ss_dssp HHHHHHHHTTCSSSSEEEE--TTT---------------EEEESCSSHHHHHHHH
T ss_pred HHHHHHHHcCCcccCEEEE--CCE---------------EEEECCCCHHHHHHHh
Confidence 4566788999999999998 332 2456777777777655
No 248
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=40.66 E-value=32 Score=34.67 Aligned_cols=41 Identities=10% Similarity=-0.044 Sum_probs=26.2
Q ss_pred cccceeeeHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCCC
Q 010286 471 STNAVVVPVGAALAIALASCAFGALACYWRSQQKNRKPRRS 511 (513)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (513)
-..+.||-|+.|+|+++.-++..+-+..-|.+.|+.+|.+.
T Consensus 224 l~~G~VVlIslAiALG~v~ll~l~Gii~~~~~r~~~~~~~~ 264 (281)
T PF12768_consen 224 LSRGFVVLISLAIALGTVFLLVLIGIILAYIRRRRQGYVPA 264 (281)
T ss_pred ccceEEEEEehHHHHHHHHHHHHHHHHHHHHHhhhccCcCC
Confidence 34678999999988877654332222222577777788654
No 249
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=39.02 E-value=32 Score=32.04 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=27.3
Q ss_pred hcHHHHHHCCCCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHH
Q 010286 116 INTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (513)
Q Consensus 116 ~n~~lc~~f~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i 170 (513)
++.+.+.+.||.++||+++ +|+ ..+.|..+.+.+.+.|
T Consensus 163 ~~~~~a~~~gv~G~Pt~vv--~g~---------------~~~~G~~~~~~~~~~i 200 (201)
T cd03024 163 ADEARARQLGISGVPFFVF--NGK---------------YAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHHHCCCCcCCEEEE--CCe---------------EeecCCCCHHHHHHHh
Confidence 4566788999999999987 221 1246778888777655
No 250
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=38.99 E-value=62 Score=27.69 Aligned_cols=57 Identities=9% Similarity=0.145 Sum_probs=41.1
Q ss_pred eecCcccHHHHHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc
Q 010286 49 VELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL 114 (513)
Q Consensus 49 ~~L~~~~f~~~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~ 114 (513)
..++++.+. +.+-+++++||.=-|+-||.=. --..+++|.+.|++ ..+.|.++=|.+
T Consensus 7 ~~~~G~~v~--l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~------~gl~ILaFPcnq 63 (108)
T PF00255_consen 7 KDIDGKPVS--LSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKD------KGLEILAFPCNQ 63 (108)
T ss_dssp EBTTSSEEE--GGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGG------GTEEEEEEEBST
T ss_pred eCCCCCEEC--HHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhc------CCeEEEeeehHH
Confidence 334444433 4455678889989999999888 44588888899974 348899998853
No 251
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.02 E-value=46 Score=32.34 Aligned_cols=42 Identities=14% Similarity=0.175 Sum_probs=32.7
Q ss_pred HHHHHHCCCCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhccc
Q 010286 118 TNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (513)
Q Consensus 118 ~~lc~~f~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~~ 176 (513)
...+++.||+++||++| .++ ..+.|..+.+.+..-|++.++.
T Consensus 174 ~~~A~e~gI~gVP~fv~--d~~---------------~~V~Gaq~~~v~~~al~~~~~~ 215 (225)
T COG2761 174 EAAAQEMGIRGVPTFVF--DGK---------------YAVSGAQPYDVLEDALRQLLAE 215 (225)
T ss_pred HHHHHHCCCccCceEEE--cCc---------------EeecCCCCHHHHHHHHHHHHhc
Confidence 45788999999999998 221 2357888999999999887753
No 252
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=37.52 E-value=1.7e+02 Score=31.06 Aligned_cols=98 Identities=10% Similarity=0.186 Sum_probs=62.5
Q ss_pred cHHHHHhcCC-CCeEEEEEecCCCHHHhhhh-HHH-HHH-HHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccc
Q 010286 55 NFDAVLRDTP-ATYAVVEFFANWCPACRNYK-PQY-EKV-ARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYP 130 (513)
Q Consensus 55 ~f~~~l~~~~-~~~vLV~FyA~WCg~Ck~~~-P~~-~~l-A~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~P 130 (513)
++...|..++ ++.++|.|-+.--...+.|. -.| ... ++.+. ..+..++|+........+..-|.+..+|
T Consensus 7 nipeAIa~aK~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls-------~~fVaIkiqags~aa~qFs~IYp~v~vP 79 (506)
T KOG2507|consen 7 NIPEAIAEAKGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLS-------KYFVAIKIQAGSVAATQFSAIYPYVSVP 79 (506)
T ss_pred chHHHHHHhhcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhh-------cceEEEEeccCchhhhhhhhhccccccc
Confidence 4445554332 35678888888777777776 233 322 22222 2366667775444456677788999999
Q ss_pred eEEEec-CCcccCCCCCCccccchhhhccCcCCHHHHHHHHHH
Q 010286 131 MLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (513)
Q Consensus 131 Tl~~f~-~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~ 172 (513)
.++|+. .| ..++.+.|..++++|..-|++
T Consensus 80 s~ffIg~sG-------------tpLevitg~v~adeL~~~i~K 109 (506)
T KOG2507|consen 80 SIFFIGFSG-------------TPLEVITGFVTADELASSIEK 109 (506)
T ss_pred ceeeecCCC-------------ceeEEeeccccHHHHHHHHHH
Confidence 998864 33 345667888889999877765
No 253
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=35.20 E-value=33 Score=28.68 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=16.3
Q ss_pred EEEecCCCHHHhhhhHHHHH
Q 010286 70 VEFFANWCPACRNYKPQYEK 89 (513)
Q Consensus 70 V~FyA~WCg~Ck~~~P~~~~ 89 (513)
..|+.++|+.|++....+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE 21 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 56889999999998766665
No 254
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=34.82 E-value=60 Score=27.74 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=13.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhcCCC
Q 010286 481 AALAIALASCAFGALACYWRSQQKNRKPR 509 (513)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (513)
+.+|++|.-+.+.-|.+|.+++++++.+.
T Consensus 5 ~il~llLll~l~asl~~wr~~~rq~k~~~ 33 (107)
T PF15330_consen 5 GILALLLLLSLAASLLAWRMKQRQKKAGQ 33 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 44555544444435555544444444443
No 255
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=34.77 E-value=20 Score=31.38 Aligned_cols=28 Identities=25% Similarity=0.422 Sum_probs=15.5
Q ss_pred HHHHHHHhhhhHHH---HHHHHHhhhcCCCC
Q 010286 483 LAIALASCAFGALA---CYWRSQQKNRKPRR 510 (513)
Q Consensus 483 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 510 (513)
+|.++.|.|+.+|+ +||+.++||||-+|
T Consensus 83 ~G~vlLs~GLmlL~~~alcW~~~~rkK~~kr 113 (129)
T PF15099_consen 83 FGPVLLSLGLMLLACSALCWKPIIRKKKKKR 113 (129)
T ss_pred ehHHHHHHHHHHHHhhhheehhhhHhHHHHh
Confidence 34445555555444 46877766665433
No 256
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=34.42 E-value=75 Score=31.07 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=41.3
Q ss_pred HHhcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEec
Q 010286 59 VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDC 112 (513)
Q Consensus 59 ~l~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc 112 (513)
.+.++.+.++||-+-..+|..|..-+.-++.|-.++...+. ..|.|..||-
T Consensus 20 pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~---~~I~f~vVN~ 70 (238)
T PF04592_consen 20 PMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGL---SNISFMVVNH 70 (238)
T ss_pred HhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCC---CceEEEEEcC
Confidence 34555667889999999999999999999999888865542 4699999995
No 257
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=33.83 E-value=2.8e+02 Score=28.87 Aligned_cols=103 Identities=13% Similarity=0.174 Sum_probs=55.9
Q ss_pred CcceecCcccHHHHHhcCCCCeEEEEEecCC-CHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHC
Q 010286 46 DHAVELNATNFDAVLRDTPATYAVVEFFANW-CPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (513)
Q Consensus 46 ~~v~~L~~~~f~~~l~~~~~~~vLV~FyA~W-Cg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f 124 (513)
++|..++.+.=.+...+-...+.||-|+-+- -.|-+ .|+.+|..+. +.|.|+++= ++.++++.
T Consensus 146 dPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~yk----~FeeAAe~F~-------p~IkFfAtf-----d~~vAk~L 209 (383)
T PF01216_consen 146 DPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEHYK----EFEEAAEHFQ-------PYIKFFATF-----DKKVAKKL 209 (383)
T ss_dssp SSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHHHH----HHHHHHHHCT-------TTSEEEEE------SHHHHHHH
T ss_pred cchhhhcChhhhhhhhhcccceeEEEEeCCCCcHHHH----HHHHHHHhhc-------CceeEEEEe-----cchhhhhc
Confidence 5565555432222222212245688887774 33333 4678899986 457777754 57899999
Q ss_pred CCCccceEEEecCCcccCCCCCCccccchhhhccCcCCHHHHHHHHHHhccc
Q 010286 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (513)
Q Consensus 125 ~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~~~l~~ 176 (513)
++. .=.+-||.|- .. ..+..-..+.+.++|.+||+++-.+
T Consensus 210 ~lK-~nev~fyepF--~~---------~pi~ip~~p~~e~e~~~fi~~h~rp 249 (383)
T PF01216_consen 210 GLK-LNEVDFYEPF--MD---------EPITIPGKPYTEEELVEFIEEHKRP 249 (383)
T ss_dssp T-S-TT-EEEE-TT--SS---------SEEEESSSS--HHHHHHHHHHT-S-
T ss_pred Ccc-ccceeeeccc--cC---------CCccCCCCCCCHHHHHHHHHHhchh
Confidence 997 6678888763 21 1112223356889999999998754
No 258
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=33.66 E-value=1.5e+02 Score=22.78 Aligned_cols=71 Identities=11% Similarity=0.193 Sum_probs=44.8
Q ss_pred EecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEEecCCcccCCCCCCcccc
Q 010286 72 FFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEK 151 (513)
Q Consensus 72 FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~f~~g~~~~~~~~~~~~~ 151 (513)
++.++|+.|++..=.++. ++ =.+.+..++.. +...++.+...-..+|++. .+|..
T Consensus 2 y~~~~Sp~~~kv~~~l~~-----~~------i~~~~~~v~~~-~~~~~~~~~~p~~~vPvL~--~~g~~----------- 56 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEE-----KG------IPYELVPVDPE-EKRPEFLKLNPKGKVPVLV--DDGEV----------- 56 (75)
T ss_dssp EEETTSHHHHHHHHHHHH-----HT------EEEEEEEEBTT-STSHHHHHHSTTSBSSEEE--ETTEE-----------
T ss_pred CCcCCChHHHHHHHHHHH-----cC------CeEEEeccCcc-cchhHHHhhcccccceEEE--ECCEE-----------
Confidence 678999999997543332 21 12455556643 2346677777888999997 22321
Q ss_pred chhhhccCcCCHHHHHHHHHHhcc
Q 010286 152 KEIRALEDWQTADGLLTWINKQTS 175 (513)
Q Consensus 152 ~~v~~~~g~~~~e~L~~~i~~~l~ 175 (513)
-.+...|.++|+++.+
T Consensus 57 --------l~dS~~I~~yL~~~~~ 72 (75)
T PF13417_consen 57 --------LTDSAAIIEYLEERYP 72 (75)
T ss_dssp --------EESHHHHHHHHHHHST
T ss_pred --------EeCHHHHHHHHHHHcC
Confidence 1356778888887754
No 259
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=33.26 E-value=55 Score=29.19 Aligned_cols=12 Identities=33% Similarity=0.836 Sum_probs=9.4
Q ss_pred CHHHhhhhHHHH
Q 010286 77 CPACRNYKPQYE 88 (513)
Q Consensus 77 Cg~Ck~~~P~~~ 88 (513)
||+||++.-+|.
T Consensus 88 CG~CRQ~i~Ef~ 99 (134)
T COG0295 88 CGACRQVLAEFC 99 (134)
T ss_pred cHHHHHHHHHhc
Confidence 999999875553
No 260
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=32.79 E-value=35 Score=30.70 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=14.3
Q ss_pred HHHHHhhhhHHHHHHHHHhhhcCCCC
Q 010286 485 IALASCAFGALACYWRSQQKNRKPRR 510 (513)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (513)
+++.-.+++.++++++.+.++++|||
T Consensus 27 ~~lll~~~~~~~~~~~r~~~~~~yrr 52 (146)
T PF14316_consen 27 LALLLLLLILLLWRLWRRWRRNRYRR 52 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 33333344455555556666677876
No 261
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=32.02 E-value=40 Score=28.48 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=15.8
Q ss_pred EEEecCCCHHHhhhhHHHHH
Q 010286 70 VEFFANWCPACRNYKPQYEK 89 (513)
Q Consensus 70 V~FyA~WCg~Ck~~~P~~~~ 89 (513)
..|+.|+|+.|++..-.+++
T Consensus 2 ~iy~~~~C~~crka~~~L~~ 21 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA 21 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 46889999999997655554
No 262
>PF15284 PAGK: Phage-encoded virulence factor
Probab=31.81 E-value=61 Score=24.65 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhcCCC
Q 010286 479 VGAALAIALASCAFGALACYWRSQQKNRKPR 509 (513)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (513)
|-+++.++|.+.+|.+++.- +.++.+|+..
T Consensus 7 ifL~l~~~LsA~~FSasamA-a~~~~~~~~~ 36 (61)
T PF15284_consen 7 IFLALVFILSAAGFSASAMA-ADSSPHRKPA 36 (61)
T ss_pred HHHHHHHHHHHhhhhHHHHH-HhhCCCCCCc
Confidence 56788899999999999988 7888877653
No 263
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=31.48 E-value=59 Score=24.67 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=32.1
Q ss_pred EEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccch--hcHHHHHHCCCCccceEEE
Q 010286 70 VEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 70 V~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d--~n~~lc~~f~I~~~PTl~~ 134 (513)
..|+.+.|+.|++..-.++...-. +.+..+|.... ...++.+......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~-----------~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE-----------LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD 57 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC-----------CEEEEecCccCCcCCHHHHhhCcCCCCCEEEE
Confidence 357889999999766555543222 33344553211 2245555566678899964
No 264
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=31.25 E-value=43 Score=26.46 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=16.9
Q ss_pred eeeeHHHHHHHHHHHhhhhHH
Q 010286 475 VVVPVGAALAIALASCAFGAL 495 (513)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~ 495 (513)
-++|+.+++|++++.|++-++
T Consensus 5 el~PL~~~vg~a~~~a~~~~~ 25 (73)
T PF06522_consen 5 ELYPLFVIVGVAVGGATFYLY 25 (73)
T ss_pred cccchHHHHHHHHHHHHHHHH
Confidence 478999999999988887443
No 265
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=29.84 E-value=65 Score=24.30 Aligned_cols=52 Identities=12% Similarity=0.043 Sum_probs=31.0
Q ss_pred EEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEE
Q 010286 70 VEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLL 133 (513)
Q Consensus 70 V~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~ 133 (513)
..|+.++|+.|++..-.++...-. .....+|.. ....++........+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~-----------~~~~~v~~~-~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS-----------VEIIDVDPD-NPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc-----------cEEEEcCCC-CCCHHHHhhCCCCCCCEEE
Confidence 457789999999986655543322 233345542 2234455555666889875
No 266
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=29.77 E-value=37 Score=26.30 Aligned_cols=36 Identities=22% Similarity=0.453 Sum_probs=23.9
Q ss_pred hccCChHHHHHHHHHhcC-CCCChhHH--HHHHH-Hhhhh
Q 010286 345 NFFVCEECRQHFYQMCSS-PFNKTRDF--ALWLW-STHNQ 380 (513)
Q Consensus 345 ~ff~C~~C~~hf~~~~~~-~~~~~~~~--~lWlw-~~HN~ 380 (513)
.-.||..||.|=.+.+.+ .+=|-.|. ++... +.+|.
T Consensus 14 ~tLPC~~Cr~HA~~ai~kNNiMSs~DiNyIy~FFI~lfNn 53 (70)
T PF04805_consen 14 STLPCPECRIHAKEAIQKNNIMSSNDINYIYFFFISLFNN 53 (70)
T ss_pred hcCCCHHHHHHHHHHHHhcCccccCCccchHHHHHHHHHH
Confidence 357999999999988877 55444443 33333 66653
No 267
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=29.13 E-value=55 Score=26.57 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHh
Q 010286 480 GAALAIALASCAFGALACYWRSQQ 503 (513)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~ 503 (513)
+-+++++|++...|.+.||-|.+-
T Consensus 22 ~gga~llL~~v~l~vvL~C~r~~~ 45 (87)
T PF11980_consen 22 MGGALLLLVAVCLGVVLYCHRFHW 45 (87)
T ss_pred hccHHHHHHHHHHHHHHhhhhhcc
Confidence 445557888888888888877776
No 268
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=27.51 E-value=76 Score=29.14 Aligned_cols=18 Identities=22% Similarity=0.036 Sum_probs=15.5
Q ss_pred cHHHHHHCCCCccceEEE
Q 010286 117 NTNLCDKFSVGHYPMLLW 134 (513)
Q Consensus 117 n~~lc~~f~I~~~PTl~~ 134 (513)
+.+.+++.||.++||+++
T Consensus 156 ~~~~a~~~gi~gvPtfvv 173 (192)
T cd03022 156 NTEEAIARGVFGVPTFVV 173 (192)
T ss_pred HHHHHHHcCCCcCCeEEE
Confidence 456788899999999987
No 269
>PF14986 DUF4514: Domain of unknown function (DUF4514)
Probab=27.02 E-value=73 Score=23.53 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=17.4
Q ss_pred eeHHHHHHHHHHHhhhhHHHHHH
Q 010286 477 VPVGAALAIALASCAFGALACYW 499 (513)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~ 499 (513)
.-||+||++++ |.+|.+|-.|-
T Consensus 23 a~IGtalGvai-sAgFLaLKicm 44 (61)
T PF14986_consen 23 AIIGTALGVAI-SAGFLALKICM 44 (61)
T ss_pred eeehhHHHHHH-HHHHHHHHHHH
Confidence 56899999987 67888887763
No 270
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=25.93 E-value=97 Score=29.52 Aligned_cols=44 Identities=11% Similarity=0.222 Sum_probs=30.7
Q ss_pred HHHHHHCCCCccceEEEecCCcccCCCCCCccccchhhhccC--cCCHHHHHHHHHHhc
Q 010286 118 TNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALED--WQTADGLLTWINKQT 174 (513)
Q Consensus 118 ~~lc~~f~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~g--~~~~e~L~~~i~~~l 174 (513)
..++++.++.+|||+.+-.+|+..-- -.| ..+.+.+.+++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l-------------~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVL-------------GTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEec-------------cCCcccCCcHHHHHHHHHHH
Confidence 56899999999999999777654210 012 245677888777654
No 271
>smart00575 ZnF_PMZ plant mutator transposase zinc finger.
Probab=25.37 E-value=38 Score=21.38 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=12.0
Q ss_pred CCCcCcccccHHHHHHHHhh
Q 010286 306 KNDTRGFSCGLWVLLHSLSV 325 (513)
Q Consensus 306 ~~~~Rgy~CglW~l~H~ltv 325 (513)
+.+..|+||. |.++|
T Consensus 7 ~~~~~gipC~-----H~i~v 21 (28)
T smart00575 7 KFQLSGIPCR-----HALAA 21 (28)
T ss_pred CcccCCccHH-----HHHHH
Confidence 6678899998 87776
No 272
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=24.72 E-value=1.7e+02 Score=21.98 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=14.1
Q ss_pred EEecCCCHHHhhhhHHHHH
Q 010286 71 EFFANWCPACRNYKPQYEK 89 (513)
Q Consensus 71 ~FyA~WCg~Ck~~~P~~~~ 89 (513)
.++.++|++|++..-.+..
T Consensus 3 Ly~~~~~p~~~rvr~~L~~ 21 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGL 21 (71)
T ss_pred eEecCCCcHhHHHHHHHHH
Confidence 4677899999987655544
No 273
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=24.68 E-value=54 Score=32.42 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=21.2
Q ss_pred CCCCeEEEEEecCCCHHHhhhh-HHHHHH
Q 010286 63 TPATYAVVEFFANWCPACRNYK-PQYEKV 90 (513)
Q Consensus 63 ~~~~~vLV~FyA~WCg~Ck~~~-P~~~~l 90 (513)
.++|+.++..-+.|||.|-..+ +.+..|
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~AL 84 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIAL 84 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHH
Confidence 3468889999999999999876 333434
No 274
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=23.94 E-value=69 Score=27.23 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=16.0
Q ss_pred EEEecCCCHHHhhhhHHHHH
Q 010286 70 VEFFANWCPACRNYKPQYEK 89 (513)
Q Consensus 70 V~FyA~WCg~Ck~~~P~~~~ 89 (513)
..|..++|+.|++..-.+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE 21 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 45789999999998766665
No 275
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=23.73 E-value=97 Score=22.49 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=9.0
Q ss_pred CCchhHHHHHHHHHHHHHH
Q 010286 1 MSRRPAILIVNLLLCLLLR 19 (513)
Q Consensus 1 M~~~~~~l~~~ll~lll~~ 19 (513)
|++|.+.+++.++++++.+
T Consensus 1 MmKk~i~~i~~~l~~~~~l 19 (48)
T PRK10081 1 MVKKTIAAIFSVLVLSTVL 19 (48)
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 6655554444444444333
No 276
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.55 E-value=2.9e+02 Score=29.01 Aligned_cols=84 Identities=14% Similarity=0.225 Sum_probs=55.1
Q ss_pred hcCCCCeEEEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCCccceEEEecCCcc
Q 010286 61 RDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKF 140 (513)
Q Consensus 61 ~~~~~~~vLV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~~~PTl~~f~~g~~ 140 (513)
.+-.+.+-+=-|++-.|..|-..-..+.-++- ++ ++|.-.+||-+ -.++-...-+|.++||+++ +|+
T Consensus 112 k~i~g~~~FETy~SltC~nCPDVVQALN~msv-lN-------p~I~H~~IdGa--~Fq~Evear~IMaVPtvfl--nGe- 178 (520)
T COG3634 112 KAIDGDFHFETYFSLTCHNCPDVVQALNLMSV-LN-------PRIKHTAIDGA--LFQDEVEARNIMAVPTVFL--NGE- 178 (520)
T ss_pred HhcCCceeEEEEEEeeccCChHHHHHHHHHHh-cC-------CCceeEEecch--hhHhHHHhccceecceEEE--cch-
Confidence 33334556777888889999776666665443 32 46888999964 2344455668999999976 331
Q ss_pred cCCCCCCccccchhhhccCcCCHHHHHHHHH
Q 010286 141 VAGSWEPNQEKKEIRALEDWQTADGLLTWIN 171 (513)
Q Consensus 141 ~~~~~~~~~~~~~v~~~~g~~~~e~L~~~i~ 171 (513)
..-+|.++.++|++-|.
T Consensus 179 --------------~fg~GRmtleeilaki~ 195 (520)
T COG3634 179 --------------EFGQGRMTLEEILAKID 195 (520)
T ss_pred --------------hhcccceeHHHHHHHhc
Confidence 12356778888776664
No 277
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=22.97 E-value=85 Score=27.63 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=15.9
Q ss_pred EEEEecCCCHHHhhhhHHHHH
Q 010286 69 VVEFFANWCPACRNYKPQYEK 89 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~ 89 (513)
+..|+.++|+.|++..-.+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~ 22 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 456789999999997655543
No 278
>PRK10561 glycerol-3-phosphate transporter permease; Provisional
Probab=22.08 E-value=1e+02 Score=30.51 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=24.9
Q ss_pred eeHHHHHHHHHHHhhhhHHHHHHHHHhhhcCC
Q 010286 477 VPVGAALAIALASCAFGALACYWRSQQKNRKP 508 (513)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (513)
.+.+||+|+.+....+.++..+.|...|+++|
T Consensus 248 ~~~aaa~a~il~~~~~~~~~~~~~~~~~~~~~ 279 (280)
T PRK10561 248 LSSSAAQSVVLMFLVIVLTVVQFRYVESKVRY 279 (280)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 56788888888888887777777777777766
No 279
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=21.69 E-value=1.9e+02 Score=26.31 Aligned_cols=16 Identities=13% Similarity=0.573 Sum_probs=13.3
Q ss_pred ChHHHHHHHHHHhCCC
Q 010286 430 DQDEVFKFLTNYYGNT 445 (513)
Q Consensus 430 ~e~~V~~fL~~~Y~~~ 445 (513)
.+.+|..|+...||.-
T Consensus 79 S~~qIid~mVaRYG~F 94 (153)
T COG3088 79 SDQQIIDYMVARYGEF 94 (153)
T ss_pred cHHHHHHHHHHhhcce
Confidence 4688999999999874
No 280
>PF05214 Baculo_p33: Baculovirus P33; InterPro: IPR007879 This family consists of a series of baculoviral 33 kDa early protein homologues.; PDB: 3QZY_B 3P0K_A.
Probab=21.32 E-value=72 Score=31.26 Aligned_cols=43 Identities=30% Similarity=0.636 Sum_probs=26.9
Q ss_pred HHHHHHHHhhcCCC---C-C--C-H---HHHHHHHHHhHh-c--cCChHHHHHHHH
Q 010286 316 LWVLLHSLSVRIDD---G-E--S-Q---FTFTAVCDFIHN-F--FVCEECRQHFYQ 358 (513)
Q Consensus 316 lW~l~H~ltv~~~~---~-~--~-~---~~~~~~~~~v~~-f--f~C~~C~~hf~~ 358 (513)
.|=..|.|+.=.+| + . + . .-+..|+..+.+ | ..|.-||+|+..
T Consensus 108 IWD~IH~l~li~DdmV~nR~~~~~d~v~~~l~n~K~lfYNiF~~L~C~mC~~HYl~ 163 (250)
T PF05214_consen 108 IWDSIHFLCLIIDDMVDNRHKLSYDFVSNQLKNMKWLFYNIFFKLFCPMCRDHYLT 163 (250)
T ss_dssp HHHHHHHHHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHT---SSS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhHhheeCChHHhHHHee
Confidence 59999999986543 1 1 1 1 234555555555 3 399999999964
No 281
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=21.20 E-value=1.2e+02 Score=27.65 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=30.1
Q ss_pred EEEEecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEec
Q 010286 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDC 112 (513)
Q Consensus 69 LV~FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc 112 (513)
|..||..-||+|-...+.+.++.+.+.+ -.|...-+..
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~------~~i~~~p~~l 39 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPD------VEIEWRPFPL 39 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTT------CEEEEEEESS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcC------CcEEEecccc
Confidence 6789999999999999999999999832 2355555554
No 282
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=20.85 E-value=1.2e+02 Score=29.39 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=26.5
Q ss_pred cccccccccceeeeHHHHHHHHHHHhhhhHHHHHHH
Q 010286 465 LEDLVVSTNAVVVPVGAALAIALASCAFGALACYWR 500 (513)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (513)
..-...|.+.+++|+..|| |.+.-..|..|++|..
T Consensus 179 t~stspS~S~vilpvvIal-iVitl~vf~LvgLyr~ 213 (259)
T PF07010_consen 179 TSSTSPSYSSVILPVVIAL-IVITLSVFTLVGLYRM 213 (259)
T ss_pred cccCCccccchhHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3333446677889999888 8888889989999843
No 283
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=20.46 E-value=1e+02 Score=25.87 Aligned_cols=45 Identities=18% Similarity=0.425 Sum_probs=30.7
Q ss_pred EecCCCHHHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccchhcHHHHHHCCCC
Q 010286 72 FFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG 127 (513)
Q Consensus 72 FyA~WCg~Ck~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~n~~lc~~f~I~ 127 (513)
||-..||-|....-.+++... .+.+.+..+. .+...++.+.+++.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~---------~~~l~~~~~~--~~~~~~~~~~~~~~ 46 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR---------GGRLRFVDIQ--SEPDQALLASYGIS 46 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC---------CCCEEEEECC--ChhhhhHHHhcCcC
Confidence 788999999999888877611 1346666552 24455666777765
No 284
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=20.42 E-value=1.1e+02 Score=25.66 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhHhc--cCChHHHHHHHHHhcC
Q 010286 333 QFTFTAVCDFIHNF--FVCEECRQHFYQMCSS 362 (513)
Q Consensus 333 ~~~~~~~~~~v~~f--f~C~~C~~hf~~~~~~ 362 (513)
..+-++|.....+| |.|.+|++-..+.+..
T Consensus 3 ~~~~Q~I~~I~~~f~~~qC~~cA~Al~~~L~~ 34 (100)
T PF15643_consen 3 AEVRQQIGKIASRFKIFQCVECASALKQFLKQ 34 (100)
T ss_pred HHHHHHHHHhhcccCceehHHHHHHHHHHHHH
Confidence 34556677777777 9999999988876644
Done!