BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010287
(513 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 453 bits (1165), Expect = e-127, Method: Compositional matrix adjust.
Identities = 247/511 (48%), Positives = 321/511 (62%), Gaps = 76/511 (14%)
Query: 4 GGGSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63
GGG+ ++W FSQV G ++V E DIIS +EF+ SG+ LATGD+GGRVV+F+
Sbjct: 5 GGGND------IQWCFSQVKG--AVDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQ 56
Query: 64 RTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS 123
Q ++ ++ +S E+ + FQSHEPEFDYLKSLEIEEKINKIRW
Sbjct: 57 ---------QEQENKIQSHSRG---EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104
Query: 124 ANSALYLLSTNDKTIXXXXXXXXXXXXXFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183
N+A +LLSTNDKTI W + G
Sbjct: 105 KNAAQFLLSTNDKTIKL-------------WKISERDKRPEG------------------ 133
Query: 184 GCGERNFGCASNDSSF-PPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS 242
+ D + P V++LR+PV + + A RRI+A+AH YHINSIS NS
Sbjct: 134 ------YNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS 187
Query: 243 DGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS 302
D ET++SADDLRINLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP CN YSSS
Sbjct: 188 DYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS 247
Query: 303 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMT 362
KG+IRL DMR SALCD HSKLFEE E P RSFF+EII+SISD+KF+ +GR++++RDY++
Sbjct: 248 KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLS 307
Query: 363 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 422
+K+WD+NM++ PV T+QVHE+LR KLC LYEND IFDKFECC +G V TGSY+N FR
Sbjct: 308 VKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFR 367
Query: 423 VFGCSEGSAESTTLEASK-NPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALD-ANGN 480
+F + TLEAS+ N R V R+V + D + +
Sbjct: 368 MF--DRNTKRDITLEASRENNKPRTVLKP--------------RKVCASGKRKKDEISVD 411
Query: 481 AFDFSMKLLHLAWHPSENSIACAASNSLYMY 511
+ DF+ K+LH AWHP EN IA A +N+LY++
Sbjct: 412 SLDFNKKILHTAWHPKENIIAVATTNNLYIF 442
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 353 RHILSRDYMTLKLWDINMDSGPV-ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 411
R +S D + L I +SG V AT + E R KLCD Y+ +FD+ +C + G
Sbjct: 165 RRKMSEDVCAVFLEPIQGESGIVPATKEFLEEAR-KLCDEYDALLVFDEVQCGMGRTGKL 223
Query: 412 VATGSYSNLFRVFGCSEG 429
A Y + V ++G
Sbjct: 224 FAYQKYGVVPDVLTTAKG 241
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 14/147 (9%)
Query: 228 AHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA 287
AHA + S + D ++D RI LW+ + I P + TS
Sbjct: 167 AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLP------TSL 220
Query: 288 EFHPTHCNMLAYSSSKGSIRLIDMRQSALC---DTHSK-----LFEEQEAPGTRSFFTEI 339
+HP + + G++ L+D + ++ HS+ +F P S +
Sbjct: 221 AWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC 280
Query: 340 IASISDIKFARNGRHILSRDYMTLKLW 366
++ D + R RD++ W
Sbjct: 281 SLAVLDSSLSELFRSQAHRDFVRDATW 307
>pdb|1JMY|A Chain A, Truncated Recombinant Human Bile Salt Stimulated Lipase
Length = 522
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 226 IYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSF 267
+YA+A D + +NN DG F S D RIN N +++ + F
Sbjct: 303 LYANAADIDYIAGTNNMDGHIFASIDMPRINKGNKKVTEEDF 344
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 53/224 (23%)
Query: 231 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF 289
H I+ ++ +SD +SA DD + +W++ S + ++ + + F
Sbjct: 86 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVS-SGKCLK-------TLKGHSNYVFCCNF 137
Query: 290 HPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HS------------------------K 322
+P N++ S S+R+ D++ T HS +
Sbjct: 138 NP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 196
Query: 323 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVH 381
+++ ++ + +S +KF+ NG++IL+ TLKLWD + + T+ H
Sbjct: 197 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-LKTYTGH 255
Query: 382 EHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGSYSNLFRVF 424
++ E IF F S GG+ + +GS NL ++
Sbjct: 256 KN---------EKYCIFANF----SVTGGKWIVSGSEDNLVYIW 286
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 53/225 (23%)
Query: 230 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE 288
H I+ ++ +SD +SA DD + +W++ S + ++ + +
Sbjct: 87 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS-SGKCLK-------TLKGHSNYVFCCN 138
Query: 289 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HS------------------------ 321
F+P N++ S S+R+ D++ T HS
Sbjct: 139 FNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 197
Query: 322 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 380
++++ ++ + +S +KF+ NG++IL+ TLKLWD + + T+
Sbjct: 198 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-LKTYTG 256
Query: 381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGSYSNLFRVF 424
H++ E IF F S GG+ + +GS NL ++
Sbjct: 257 HKN---------EKYCIFANF----SVTGGKWIVSGSEDNLVYIW 288
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 53/225 (23%)
Query: 230 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE 288
H I+ ++ +SD +SA DD + +W++ S + ++ + +
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS-SGKCLK-------TLKGHSNYVFCCN 120
Query: 289 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HS------------------------ 321
F+P N++ S S+R+ D++ T HS
Sbjct: 121 FNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 322 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 380
++++ ++ + +S +KF+ NG++IL+ TLKLWD + + T+
Sbjct: 180 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-LKTYTG 238
Query: 381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGSYSNLFRVF 424
H++ E IF F S GG+ + +GS NL ++
Sbjct: 239 HKN---------EKYCIFANF----SVTGGKWIVSGSEDNLVYIW 270
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 53/225 (23%)
Query: 230 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE 288
H I+ ++ +SD +SA DD + +W++ S + ++ + +
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS-SGKCLK-------TLKGHSNYVFCCN 120
Query: 289 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HS------------------------ 321
F+P N++ S S+R+ D++ T HS
Sbjct: 121 FNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 322 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 380
++++ ++ + +S +KF+ NG++IL+ TLKLWD + + T+
Sbjct: 180 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-LKTYTG 238
Query: 381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGSYSNLFRVF 424
H++ E IF F S GG+ + +GS NL ++
Sbjct: 239 HKN---------EKYCIFANF----SVTGGKWIVSGSEDNLVYIW 270
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 53/225 (23%)
Query: 230 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE 288
H I+ ++ +SD +SA DD + +W++ S + ++ + +
Sbjct: 68 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS-SGKCLK-------TLKGHSNYVFCCN 119
Query: 289 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HS------------------------ 321
F+P N++ S S+R+ D++ T HS
Sbjct: 120 FNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 178
Query: 322 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 380
++++ ++ + +S +KF+ NG++IL+ TLKLWD + + T+
Sbjct: 179 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-LKTYTG 237
Query: 381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGSYSNLFRVF 424
H++ E IF F S GG+ + +GS NL ++
Sbjct: 238 HKN---------EKYCIFANF----SVTGGKWIVSGSEDNLVYIW 269
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 53/225 (23%)
Query: 230 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE 288
H I+ ++ +SD +SA DD + +W++ S + ++ + +
Sbjct: 59 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS-SGKCLK-------TLKGHSNYVFCCN 110
Query: 289 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HS------------------------ 321
F+P N++ S S+R+ D++ T HS
Sbjct: 111 FNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 169
Query: 322 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 380
++++ ++ + +S +KF+ NG++IL+ TLKLWD + + T+
Sbjct: 170 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-LKTYTG 228
Query: 381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGSYSNLFRVF 424
H++ E IF F S GG+ + +GS NL ++
Sbjct: 229 HKN---------EKYCIFANF----SVTGGKWIVSGSEDNLVYIW 260
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 53/225 (23%)
Query: 230 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE 288
H I+ ++ +SD +SA DD + +W++ S + ++ + +
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS-SGKCLK-------TLKGHSNYVFCCN 114
Query: 289 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HS------------------------ 321
F+P N++ S S+R+ D++ T HS
Sbjct: 115 FNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173
Query: 322 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 380
++++ ++ + +S +KF+ NG++IL+ TLKLWD + + T+
Sbjct: 174 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-LKTYTG 232
Query: 381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGSYSNLFRVF 424
H++ E IF F S GG+ + +GS NL ++
Sbjct: 233 HKN---------EKYCIFANF----SVTGGKWIVSGSEDNLVYIW 264
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 53/225 (23%)
Query: 230 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE 288
H I+ ++ +SD +SA DD + +W++ S + ++ + +
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS-SGKCLK-------TLKGHSNYVFCCN 114
Query: 289 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HS------------------------ 321
F+P N++ S S+R+ D++ T HS
Sbjct: 115 FNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173
Query: 322 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 380
++++ ++ + +S +KF+ NG++IL+ TLKLWD + + T+
Sbjct: 174 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-LKTYTG 232
Query: 381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGSYSNLFRVF 424
H++ E IF F S GG+ + +GS NL ++
Sbjct: 233 HKN---------EKYCIFANF----SVTGGKWIVSGSEDNLVYIW 264
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 53/225 (23%)
Query: 230 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE 288
H I+ ++ +SD +SA DD + +W++ S + ++ + +
Sbjct: 62 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS-SGKCLK-------TLKGHSNYVFCCN 113
Query: 289 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HS------------------------ 321
F+P N++ S S+R+ D++ T HS
Sbjct: 114 FNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 172
Query: 322 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 380
++++ ++ + +S +KF+ NG++IL+ TLKLWD + + T+
Sbjct: 173 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-LKTYTG 231
Query: 381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGSYSNLFRVF 424
H++ E IF F S GG+ + +GS NL ++
Sbjct: 232 HKN---------EKYCIFANF----SVTGGKWIVSGSEDNLVYIW 263
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 53/225 (23%)
Query: 230 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE 288
H I+ ++ +SD +SA DD + +W++ S + ++ + +
Sbjct: 64 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS-SGKCLK-------TLKGHSNYVFCCN 115
Query: 289 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HS------------------------ 321
F+P N++ S S+R+ D++ T HS
Sbjct: 116 FNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 174
Query: 322 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 380
++++ ++ + +S +KF+ NG++IL+ TLKLWD + + T+
Sbjct: 175 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-LKTYTG 233
Query: 381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGSYSNLFRVF 424
H++ E IF F S GG+ + +GS NL ++
Sbjct: 234 HKN---------EKYCIFANF----SVTGGKWIVSGSEDNLVYIW 265
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 53/225 (23%)
Query: 230 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE 288
H I+ ++ +SD +SA DD + +W++ S + ++ + +
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS-SGKCLK-------TLKGHSNYVFCCN 120
Query: 289 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HS------------------------ 321
F+P N++ S S+R+ D++ T HS
Sbjct: 121 FNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 322 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 380
++++ ++ + +S +KF+ NG++IL+ TLKLWD + + T+
Sbjct: 180 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-LKTYTG 238
Query: 381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGSYSNLFRVF 424
H++ E IF F S GG+ + +GS NL ++
Sbjct: 239 HKN---------EKYCIFANF----SVTGGKWIVSGSEDNLVYIW 270
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 53/225 (23%)
Query: 230 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE 288
H I+ ++ +SD +SA DD + +W++ S + ++ + +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS-SGKCLK-------TLKGHSNYVFCCN 117
Query: 289 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HS------------------------ 321
F+P N++ S S+R+ D++ T HS
Sbjct: 118 FNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 322 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 380
++++ ++ + +S +KF+ NG++IL+ TLKLWD + + T+
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK-CLKTYTG 235
Query: 381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGSYSNLFRVF 424
H++ E IF F S GG+ + +GS NL ++
Sbjct: 236 HKN---------EKYCIFANF----SVTGGKWIVSGSEDNLVYIW 267
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 53/225 (23%)
Query: 230 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE 288
H I+ ++ +SD +SA DD + +W++ S + ++ + +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS-SGKCLK-------TLKGHSNYVFCCN 117
Query: 289 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HS------------------------ 321
F+P N++ S S+R+ D++ T HS
Sbjct: 118 FNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 322 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 380
++++ ++ + +S +KF+ NG++IL+ TLKLWD + + T+
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK-CLKTYTG 235
Query: 381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGSYSNLFRVF 424
H++ E IF F S GG+ + +GS NL ++
Sbjct: 236 HKN---------EKYCIFANF----SVTGGKWIVSGSEDNLVYIW 267
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 53/225 (23%)
Query: 230 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE 288
H I+ ++ +SD +SA DD + +W++ S + ++ + +
Sbjct: 80 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS-SGKCLK-------TLKGHSNYVFCCN 131
Query: 289 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HS------------------------ 321
F+P N++ S S+R+ D++ T HS
Sbjct: 132 FNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 190
Query: 322 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 380
++++ ++ + +S +KF+ NG++IL+ TLKLWD + + T+
Sbjct: 191 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-LKTYTG 249
Query: 381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGSYSNLFRVF 424
H++ E IF F S GG+ + +GS NL ++
Sbjct: 250 HKN---------EKYCIFANF----SVTGGKWIVSGSEDNLVYIW 281
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 53/225 (23%)
Query: 230 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE 288
H I+ ++ +SD +SA DD + +W++ S + ++ + +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS-SGKCLK-------TLKGHSNYVFCCN 117
Query: 289 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HS------------------------ 321
F+P N++ S S+R+ D++ T HS
Sbjct: 118 FNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 322 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 380
++++ ++ + +S +KF+ NG++IL+ TLKLWD + + T+
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK-CLKTYTG 235
Query: 381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGSYSNLFRVF 424
H++ E IF F S GG+ + +GS NL ++
Sbjct: 236 HKN---------EKYCIFANF----SVTGGKWIVSGSEDNLVYIW 267
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 229 HAHDYHINSISNNSDGETFISAD-DLRINLWNLE--ISNQSF 267
+ H+ I ++S+++DG+T SAD + IN W++ ISN+ F
Sbjct: 321 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF 362
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 76/199 (38%), Gaps = 47/199 (23%)
Query: 231 HDYHINSISNNSDGETFIS-ADDLRINLWNLE--ISNQSFNIVDVKPANMEDLTEVITSA 287
H + S+S D F+S A D LW++ + Q+F + D+ +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF------TGHESDINAIC--- 233
Query: 288 EFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 347
F P N A S + RL D+R T+S II I+ +
Sbjct: 234 -FFPNG-NAFATGSDDATCRLFDLRADQELMTYSH--------------DNIICGITSVS 277
Query: 348 FARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC-L 405
F+++GR +L+ D +WD + + H++ + C +
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDA-LKADRAGVLAGHDN----------------RVSCLGV 320
Query: 406 SGDGGRVATGSYSNLFRVF 424
+ DG VATGS+ + +++
Sbjct: 321 TDDGMAVATGSWDSFLKIW 339
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 76/199 (38%), Gaps = 47/199 (23%)
Query: 231 HDYHINSISNNSDGETFIS-ADDLRINLWNLE--ISNQSFNIVDVKPANMEDLTEVITSA 287
H + S+S D F+S A D LW++ + Q+F + D+ +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF------TGHESDINAIC--- 233
Query: 288 EFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 347
F P N A S + RL D+R T+S II I+ +
Sbjct: 234 -FFPNG-NAFATGSDDATCRLFDLRADQELMTYSH--------------DNIICGITSVS 277
Query: 348 FARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC-L 405
F+++GR +L+ D +WD + + H++ + C +
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDA-LKADRAGVLAGHDN----------------RVSCLGV 320
Query: 406 SGDGGRVATGSYSNLFRVF 424
+ DG VATGS+ + +++
Sbjct: 321 TDDGMAVATGSWDSFLKIW 339
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 76/199 (38%), Gaps = 47/199 (23%)
Query: 231 HDYHINSISNNSDGETFIS-ADDLRINLWNLE--ISNQSFNIVDVKPANMEDLTEVITSA 287
H + S+S D F+S A D LW++ + Q+F + D+ +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF------TGHESDINAIC--- 233
Query: 288 EFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 347
F P N A S + RL D+R T+S II I+ +
Sbjct: 234 -FFPNG-NAFATGSDDATCRLFDLRADQELMTYSH--------------DNIICGITSVS 277
Query: 348 FARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC-L 405
F+++GR +L+ D +WD + + H++ + C +
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDA-LKADRAGVLAGHDN----------------RVSCLGV 320
Query: 406 SGDGGRVATGSYSNLFRVF 424
+ DG VATGS+ + +++
Sbjct: 321 TDDGMAVATGSWDSFLKIW 339
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 76/199 (38%), Gaps = 47/199 (23%)
Query: 231 HDYHINSISNNSDGETFIS-ADDLRINLWNLE--ISNQSFNIVDVKPANMEDLTEVITSA 287
H + S+S D F+S A D LW++ + Q+F + D+ +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF------TGHESDINAIC--- 233
Query: 288 EFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 347
F P N A S + RL D+R T+S II I+ +
Sbjct: 234 -FFPNG-NAFATGSDDATCRLFDLRADQELMTYSH--------------DNIICGITSVS 277
Query: 348 FARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC-L 405
F+++GR +L+ D +WD + + H++ + C +
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDA-LKADRAGVLAGHDN----------------RVSCLGV 320
Query: 406 SGDGGRVATGSYSNLFRVF 424
+ DG VATGS+ + +++
Sbjct: 321 TDDGMAVATGSWDSFLKIW 339
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 76/199 (38%), Gaps = 47/199 (23%)
Query: 231 HDYHINSISNNSDGETFIS-ADDLRINLWNLE--ISNQSFNIVDVKPANMEDLTEVITSA 287
H + S+S D F+S A D LW++ + Q+F + D+ +
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF------TGHESDINAIC--- 244
Query: 288 EFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 347
F P N A S + RL D+R T+S II I+ +
Sbjct: 245 -FFPNG-NAFATGSDDATCRLFDLRADQELMTYSH--------------DNIICGITSVS 288
Query: 348 FARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC-L 405
F+++GR +L+ D +WD + + H+ ++ C +
Sbjct: 289 FSKSGRLLLAGYDDFNCNVWDA-LKADRAGVLAGHD----------------NRVSCLGV 331
Query: 406 SGDGGRVATGSYSNLFRVF 424
+ DG VATGS+ + +++
Sbjct: 332 TDDGMAVATGSWDSFLKIW 350
>pdb|3IG5|A Chain A, Saccharomyces Cerevisiae Glutamate Cysteine Ligase In
Complex With Mg2+ And L-Glutamate
Length = 692
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 14/123 (11%)
Query: 10 AAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVL----FERT 65
A PL+W S+ + E E ++++ I + D L GD +V+ ER
Sbjct: 5 ALGTPLQWFESRTYNEHIRDEGIEQLLYIFQAAGKRDNDPLFWGDELEYMVVDFDDKERN 64
Query: 66 DTRDNGGQR--RDLEMMDYSM------SRHPEF-RYKTEFQSHEPEFDYLKSLEIEEKIN 116
D + +L M D S+ S HPE+ RY E P +Y+ S +E +
Sbjct: 65 SMLDVXHDKILTELNMEDSSLCEANDVSFHPEYGRYMLEATPASPYLNYVGSY-VEVNMQ 123
Query: 117 KIR 119
K R
Sbjct: 124 KRR 126
>pdb|1F6W|A Chain A, Structure Of The Catalytic Domain Of Human Bile Salt
Activated Lipase
Length = 533
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 226 IYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSF 267
+YA+A D + +NN DG F S D IN N +++ + F
Sbjct: 303 LYANAADIDYIAGTNNMDGHIFASIDMPAINKGNKKVTEEDF 344
>pdb|3IG8|A Chain A, Saccharomyces Cerevisiae Glutamate Cysteine Ligase In
Complex With Mg2+, L-Glutamate And Adp
pdb|3LVV|A Chain A, Bso-Inhibited Scgcl
pdb|3LVW|A Chain A, Glutathione-Inhibited Scgcl
Length = 692
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 14/123 (11%)
Query: 10 AAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVL----FERT 65
A PL+W S+ + E E ++++ I + D L GD +V+ ER
Sbjct: 5 ALGTPLQWFESRTYNEHIRDEGIEQLLYIFQAAGKRDNDPLFWGDELEYMVVDFDDKERN 64
Query: 66 DTRDNGGQR--RDLEMMDYSM------SRHPEF-RYKTEFQSHEPEFDYLKSLEIEEKIN 116
D + +L M D S+ S HPE+ RY E P +Y+ S +E +
Sbjct: 65 SMLDVCHDKILTELNMEDSSLCEANDVSFHPEYGRYMLEATPASPYLNYVGSY-VEVNMQ 123
Query: 117 KIR 119
K R
Sbjct: 124 KRR 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,803,217
Number of Sequences: 62578
Number of extensions: 584282
Number of successful extensions: 1341
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1331
Number of HSP's gapped (non-prelim): 65
length of query: 513
length of database: 14,973,337
effective HSP length: 103
effective length of query: 410
effective length of database: 8,527,803
effective search space: 3496399230
effective search space used: 3496399230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)