Query 010287
Match_columns 513
No_of_seqs 518 out of 1853
Neff 11.6
Searched_HMMs 46136
Date Thu Mar 28 22:45:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010287.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010287hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.3E-52 2.8E-57 352.5 28.6 328 27-511 107-477 (480)
2 KOG1354 Serine/threonine prote 100.0 1.3E-52 2.8E-57 348.0 22.9 429 10-513 5-433 (433)
3 KOG0271 Notchless-like WD40 re 100.0 5.6E-46 1.2E-50 312.5 26.6 301 12-466 137-477 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 2.4E-46 5.1E-51 318.9 22.3 283 31-466 171-456 (459)
5 COG5170 CDC55 Serine/threonine 100.0 1.4E-44 3E-49 296.7 18.7 439 15-513 6-459 (460)
6 KOG0318 WD40 repeat stress pro 100.0 5.6E-41 1.2E-45 293.8 36.7 384 30-512 54-558 (603)
7 KOG0272 U4/U6 small nuclear ri 100.0 1.8E-42 3.9E-47 295.2 23.3 278 113-513 176-459 (459)
8 KOG0319 WD40-repeat-containing 100.0 9.8E-40 2.1E-44 297.4 29.6 415 15-512 87-616 (775)
9 KOG0286 G-protein beta subunit 100.0 3.4E-39 7.4E-44 262.5 28.1 291 30-466 50-341 (343)
10 KOG0291 WD40-repeat-containing 100.0 4.2E-38 9.2E-43 287.2 36.9 398 30-513 140-549 (893)
11 KOG0315 G-protein beta subunit 100.0 1.2E-37 2.5E-42 247.8 28.2 292 47-493 10-308 (311)
12 KOG0318 WD40 repeat stress pro 100.0 7.7E-37 1.7E-41 268.0 35.3 387 30-513 185-601 (603)
13 KOG0279 G protein beta subunit 100.0 7.2E-37 1.6E-41 247.4 30.2 288 29-466 9-309 (315)
14 KOG0286 G-protein beta subunit 100.0 7.1E-37 1.5E-41 249.0 28.1 291 92-512 47-343 (343)
15 KOG0284 Polyadenylation factor 100.0 1.8E-38 4E-43 269.6 18.7 278 35-466 96-376 (464)
16 KOG0291 WD40-repeat-containing 100.0 1.3E-35 2.9E-40 271.0 38.3 395 30-513 184-611 (893)
17 KOG0273 Beta-transducin family 100.0 2.3E-36 5E-41 261.5 30.6 333 32-511 175-520 (524)
18 KOG0276 Vesicle coat complex C 100.0 2.8E-36 6.2E-41 269.7 29.1 330 31-513 9-379 (794)
19 KOG0265 U5 snRNP-specific prot 100.0 4.8E-36 1E-40 245.1 27.2 287 30-466 42-334 (338)
20 KOG0279 G protein beta subunit 100.0 2.7E-35 5.8E-40 238.3 30.1 293 92-512 7-311 (315)
21 KOG0285 Pleiotropic regulator 100.0 3.1E-36 6.6E-41 251.9 24.2 286 31-471 147-440 (460)
22 KOG0273 Beta-transducin family 100.0 3.8E-35 8.2E-40 254.0 29.0 278 31-466 231-519 (524)
23 KOG0295 WD40 repeat-containing 100.0 1.7E-35 3.7E-40 248.1 25.4 300 9-466 86-402 (406)
24 KOG0263 Transcription initiati 100.0 8.1E-36 1.8E-40 274.7 25.0 265 34-429 377-651 (707)
25 KOG0296 Angio-associated migra 100.0 1.3E-34 2.9E-39 242.9 29.8 336 29-512 58-396 (399)
26 KOG0306 WD40-repeat-containing 100.0 1.6E-34 3.5E-39 263.8 32.7 421 28-512 100-662 (888)
27 KOG0284 Polyadenylation factor 100.0 1.9E-36 4.1E-41 257.4 18.8 278 112-512 96-378 (464)
28 KOG0315 G-protein beta subunit 100.0 7.3E-35 1.6E-39 231.9 26.4 238 233-512 41-286 (311)
29 KOG0293 WD40 repeat-containing 100.0 1.6E-34 3.4E-39 246.1 25.1 285 31-466 220-509 (519)
30 KOG0319 WD40-repeat-containing 100.0 6.7E-34 1.5E-38 259.5 29.7 380 32-512 59-575 (775)
31 KOG0266 WD40 repeat-containing 100.0 1.1E-33 2.4E-38 268.4 31.7 287 34-466 158-450 (456)
32 KOG0645 WD40 repeat protein [G 100.0 7.7E-33 1.7E-37 223.2 30.7 287 31-466 10-307 (312)
33 KOG0282 mRNA splicing factor [ 100.0 1.3E-34 2.9E-39 251.6 20.9 289 27-466 206-501 (503)
34 KOG0306 WD40-repeat-containing 100.0 5.8E-33 1.2E-37 253.8 32.0 387 12-512 43-578 (888)
35 KOG0275 Conserved WD40 repeat- 100.0 9.6E-35 2.1E-39 240.1 18.5 294 31-466 209-505 (508)
36 KOG0295 WD40 repeat-containing 100.0 4.9E-34 1.1E-38 239.3 22.3 278 113-512 109-404 (406)
37 KOG0645 WD40 repeat protein [G 100.0 4.7E-32 1E-36 218.7 30.4 292 92-510 6-306 (312)
38 KOG0263 Transcription initiati 100.0 2.4E-33 5.2E-38 258.5 26.1 300 113-504 379-704 (707)
39 KOG0316 Conserved WD40 repeat- 100.0 7.1E-33 1.5E-37 218.8 24.4 276 113-513 18-298 (307)
40 KOG0278 Serine/threonine kinas 100.0 2.5E-34 5.4E-39 229.0 16.0 281 30-466 9-293 (334)
41 KOG0285 Pleiotropic regulator 100.0 1.2E-32 2.5E-37 230.6 25.9 294 85-512 136-437 (460)
42 KOG0265 U5 snRNP-specific prot 100.0 1.2E-32 2.7E-37 225.3 25.4 286 92-510 39-334 (338)
43 cd00200 WD40 WD40 domain, foun 100.0 1.2E-31 2.6E-36 243.9 34.2 281 31-466 5-287 (289)
44 KOG0292 Vesicle coat complex C 100.0 5.7E-32 1.2E-36 251.5 29.8 294 34-466 8-318 (1202)
45 KOG0266 WD40 repeat-containing 100.0 5.8E-32 1.3E-36 256.6 30.2 282 113-512 160-452 (456)
46 PLN00181 protein SPA1-RELATED; 100.0 5E-31 1.1E-35 269.5 38.8 305 30-512 478-791 (793)
47 KOG0313 Microtubule binding pr 100.0 3.2E-32 6.8E-37 229.8 24.6 298 25-467 95-415 (423)
48 KOG0316 Conserved WD40 repeat- 100.0 6E-32 1.3E-36 213.6 24.5 276 31-461 13-291 (307)
49 KOG0772 Uncharacterized conser 100.0 1.8E-32 4E-37 240.0 23.6 312 29-466 161-483 (641)
50 KOG0296 Angio-associated migra 100.0 7.7E-32 1.7E-36 226.4 26.1 304 15-466 89-394 (399)
51 KOG0282 mRNA splicing factor [ 100.0 2.2E-32 4.9E-37 237.8 20.2 289 92-512 206-503 (503)
52 KOG0283 WD40 repeat-containing 100.0 7.3E-32 1.6E-36 250.9 24.8 272 33-428 265-577 (712)
53 KOG0643 Translation initiation 100.0 7E-31 1.5E-35 211.4 26.0 289 29-466 4-313 (327)
54 KOG0276 Vesicle coat complex C 100.0 2.1E-31 4.6E-36 238.7 25.0 278 113-512 14-296 (794)
55 cd00200 WD40 WD40 domain, foun 100.0 3.9E-30 8.3E-35 233.9 32.4 277 113-512 10-289 (289)
56 KOG0640 mRNA cleavage stimulat 100.0 3.7E-31 8.1E-36 217.5 22.7 312 31-466 108-422 (430)
57 KOG1407 WD40 repeat protein [F 100.0 1E-30 2.2E-35 209.8 23.8 266 113-505 21-292 (313)
58 KOG0281 Beta-TrCP (transducin 100.0 6E-32 1.3E-36 225.6 16.8 268 34-466 196-473 (499)
59 KOG0281 Beta-TrCP (transducin 100.0 2.6E-31 5.5E-36 221.8 17.6 267 113-512 198-475 (499)
60 KOG1446 Histone H3 (Lys4) meth 100.0 6.6E-29 1.4E-33 205.5 30.0 279 34-461 13-296 (311)
61 KOG0292 Vesicle coat complex C 100.0 2.9E-30 6.2E-35 240.3 24.4 293 113-512 10-319 (1202)
62 KOG0277 Peroxisomal targeting 100.0 4E-30 8.6E-35 205.6 20.4 280 39-466 12-305 (311)
63 KOG0293 WD40 repeat-containing 100.0 5.3E-30 1.1E-34 218.6 21.9 280 113-512 225-511 (519)
64 KOG1063 RNA polymerase II elon 100.0 5.5E-29 1.2E-33 225.9 28.7 420 29-512 185-697 (764)
65 KOG1539 WD repeat protein [Gen 100.0 1.7E-28 3.8E-33 227.3 32.4 381 38-512 162-646 (910)
66 KOG0268 Sof1-like rRNA process 100.0 9.1E-31 2E-35 219.7 15.0 290 19-466 50-341 (433)
67 KOG1407 WD40 repeat protein [F 100.0 1.1E-28 2.4E-33 198.1 25.3 277 30-461 15-293 (313)
68 KOG1063 RNA polymerase II elon 100.0 1.2E-28 2.7E-33 223.7 28.3 417 30-512 49-646 (764)
69 KOG0647 mRNA export protein (c 100.0 4.7E-28 1E-32 198.7 27.0 279 34-458 26-311 (347)
70 KOG0310 Conserved WD40 repeat- 100.0 1.1E-28 2.3E-33 215.4 24.3 279 33-466 24-305 (487)
71 KOG0288 WD40 repeat protein Ti 100.0 9.8E-30 2.1E-34 217.1 17.4 284 30-466 170-457 (459)
72 KOG0313 Microtubule binding pr 100.0 1.4E-28 3.1E-33 207.8 24.1 300 105-512 98-416 (423)
73 KOG0643 Translation initiation 100.0 6E-28 1.3E-32 194.6 26.0 286 95-509 5-311 (327)
74 PTZ00421 coronin; Provisional 100.0 7.6E-28 1.6E-32 227.2 31.0 302 18-451 5-314 (493)
75 KOG0277 Peroxisomal targeting 100.0 2.8E-28 6.2E-33 195.1 23.4 239 232-512 60-307 (311)
76 KOG0973 Histone transcription 100.0 3.6E-28 7.7E-33 232.4 26.8 313 35-466 13-351 (942)
77 KOG2106 Uncharacterized conser 100.0 4.4E-27 9.5E-32 206.0 31.2 388 25-512 94-518 (626)
78 KOG0289 mRNA splicing factor [ 100.0 8E-28 1.7E-32 206.7 26.1 281 35-466 219-502 (506)
79 KOG1408 WD40 repeat protein [F 100.0 1.7E-27 3.7E-32 217.0 28.0 406 33-512 76-624 (1080)
80 KOG0772 Uncharacterized conser 100.0 3.5E-28 7.6E-33 213.4 22.7 300 113-512 168-485 (641)
81 KOG0305 Anaphase promoting com 100.0 4.6E-28 1E-32 219.9 23.7 240 35-429 217-463 (484)
82 KOG1446 Histone H3 (Lys4) meth 100.0 1.2E-26 2.5E-31 192.3 29.2 277 113-511 15-300 (311)
83 KOG1408 WD40 repeat protein [F 100.0 2.2E-27 4.8E-32 216.3 27.0 364 39-512 328-711 (1080)
84 KOG0641 WD40 repeat protein [G 100.0 5.2E-26 1.1E-30 179.1 30.2 308 31-466 28-345 (350)
85 KOG0310 Conserved WD40 repeat- 100.0 2.7E-27 5.9E-32 206.7 23.0 234 233-511 69-305 (487)
86 KOG0299 U3 snoRNP-associated p 100.0 1.1E-26 2.3E-31 201.5 25.5 300 31-458 138-443 (479)
87 KOG2106 Uncharacterized conser 100.0 1.1E-25 2.4E-30 197.3 31.9 359 34-512 245-624 (626)
88 KOG0308 Conserved WD40 repeat- 100.0 1.2E-27 2.7E-32 215.7 20.1 297 31-466 17-323 (735)
89 KOG2096 WD40 repeat protein [G 100.0 2.9E-26 6.3E-31 189.6 26.0 308 30-466 81-398 (420)
90 KOG0275 Conserved WD40 repeat- 100.0 5.2E-28 1.1E-32 200.4 15.2 284 113-512 214-507 (508)
91 KOG2096 WD40 repeat protein [G 100.0 6.8E-26 1.5E-30 187.4 26.6 297 94-512 80-400 (420)
92 KOG2048 WD40 repeat protein [G 100.0 3E-25 6.5E-30 201.5 33.3 332 35-512 25-409 (691)
93 PLN00181 protein SPA1-RELATED; 100.0 5.4E-26 1.2E-30 232.6 32.2 257 32-426 529-792 (793)
94 KOG0283 WD40 repeat-containing 100.0 8E-27 1.7E-31 217.5 23.6 203 228-466 365-572 (712)
95 KOG0641 WD40 repeat protein [G 100.0 5.4E-25 1.2E-29 173.3 30.2 317 101-512 21-347 (350)
96 PTZ00420 coronin; Provisional 100.0 1.5E-25 3.2E-30 212.5 32.4 263 53-453 50-319 (568)
97 KOG0268 Sof1-like rRNA process 100.0 1.2E-27 2.6E-32 201.1 16.0 284 92-513 58-344 (433)
98 PTZ00420 coronin; Provisional 100.0 1.2E-25 2.6E-30 213.1 31.3 241 228-498 70-319 (568)
99 KOG0647 mRNA export protein (c 100.0 7E-26 1.5E-30 186.0 25.3 271 113-504 28-312 (347)
100 KOG0305 Anaphase promoting com 100.0 3.9E-26 8.4E-31 207.4 25.9 270 38-466 180-457 (484)
101 KOG0973 Histone transcription 100.0 2.4E-26 5.1E-31 220.0 25.6 252 228-511 65-352 (942)
102 KOG1036 Mitotic spindle checkp 100.0 1.8E-25 3.9E-30 184.4 26.4 267 113-504 14-293 (323)
103 KOG0278 Serine/threonine kinas 100.0 5.9E-27 1.3E-31 187.1 17.0 236 228-512 55-295 (334)
104 KOG4283 Transcription-coupled 100.0 1.7E-25 3.6E-30 183.2 25.7 315 31-466 39-361 (397)
105 KOG1036 Mitotic spindle checkp 100.0 2.8E-25 6.1E-30 183.2 27.0 276 35-459 13-293 (323)
106 KOG0274 Cdc4 and related F-box 100.0 5.2E-26 1.1E-30 214.9 26.0 268 34-466 207-478 (537)
107 KOG0289 mRNA splicing factor [ 99.9 1.1E-25 2.3E-30 193.7 24.6 279 113-511 220-502 (506)
108 KOG0264 Nucleosome remodeling 99.9 3.6E-26 7.8E-31 198.2 21.2 270 31-428 120-405 (422)
109 KOG0300 WD40 repeat-containing 99.9 6.1E-26 1.3E-30 187.6 21.3 321 30-465 143-471 (481)
110 KOG1332 Vesicle coat complex C 99.9 3.2E-26 6.9E-31 182.3 18.9 250 228-512 7-284 (299)
111 KOG0650 WD40 repeat nucleolar 99.9 1.4E-25 3.1E-30 200.6 24.8 330 20-466 385-731 (733)
112 KOG2919 Guanine nucleotide-bin 99.9 2.6E-25 5.7E-30 184.3 24.1 341 2-466 10-366 (406)
113 KOG1332 Vesicle coat complex C 99.9 5.2E-26 1.1E-30 181.2 18.6 262 30-429 6-288 (299)
114 PTZ00421 coronin; Provisional 99.9 1.1E-24 2.4E-29 205.8 31.2 235 228-497 71-315 (493)
115 KOG0288 WD40 repeat protein Ti 99.9 9.2E-27 2E-31 199.0 15.2 274 113-511 176-458 (459)
116 KOG0294 WD40 repeat-containing 99.9 6.6E-25 1.4E-29 181.4 23.9 254 13-430 27-284 (362)
117 KOG0308 Conserved WD40 repeat- 99.9 6.5E-26 1.4E-30 204.7 18.5 251 228-511 69-324 (735)
118 KOG0274 Cdc4 and related F-box 99.9 4.3E-25 9.4E-30 208.7 24.8 254 14-432 230-487 (537)
119 KOG0264 Nucleosome remodeling 99.9 3.6E-25 7.8E-30 192.0 21.7 231 104-431 116-351 (422)
120 KOG0640 mRNA cleavage stimulat 99.9 8.4E-25 1.8E-29 180.3 22.3 295 113-512 113-424 (430)
121 KOG0294 WD40 repeat-containing 99.9 5.8E-24 1.3E-28 175.9 26.3 270 49-466 3-277 (362)
122 KOG2055 WD40 repeat protein [G 99.9 1.4E-24 3E-29 188.4 23.2 295 35-427 213-512 (514)
123 KOG0300 WD40 repeat-containing 99.9 6.5E-25 1.4E-29 181.6 19.9 298 89-512 137-474 (481)
124 KOG0301 Phospholipase A2-activ 99.9 2.1E-24 4.6E-29 196.5 25.1 274 30-466 9-284 (745)
125 KOG0299 U3 snoRNP-associated p 99.9 7.5E-24 1.6E-28 183.9 25.5 287 111-504 141-444 (479)
126 KOG1539 WD repeat protein [Gen 99.9 1.5E-23 3.2E-28 194.9 28.3 365 13-466 183-644 (910)
127 KOG2055 WD40 repeat protein [G 99.9 1.1E-23 2.3E-28 183.0 25.5 277 113-512 214-510 (514)
128 KOG1273 WD40 repeat protein [G 99.9 1.9E-23 4.2E-28 172.7 24.4 285 38-466 26-318 (405)
129 KOG1274 WD40 repeat protein [G 99.9 3.1E-23 6.7E-28 195.0 28.6 275 32-456 10-286 (933)
130 KOG0301 Phospholipase A2-activ 99.9 1.3E-23 2.8E-28 191.5 24.7 280 88-512 2-286 (745)
131 KOG0269 WD40 repeat-containing 99.9 7.7E-25 1.7E-29 201.7 16.8 246 37-429 89-342 (839)
132 KOG4328 WD40 protein [Function 99.9 1.5E-23 3.3E-28 181.9 23.5 300 31-466 182-491 (498)
133 KOG0639 Transducin-like enhanc 99.9 4.1E-24 9E-29 187.4 20.0 285 30-466 414-700 (705)
134 KOG2048 WD40 repeat protein [G 99.9 8.7E-22 1.9E-26 179.2 34.5 415 12-512 90-546 (691)
135 KOG0639 Transducin-like enhanc 99.9 6.3E-24 1.4E-28 186.3 19.5 234 233-512 466-702 (705)
136 KOG0269 WD40 repeat-containing 99.9 2.4E-24 5.2E-29 198.5 16.6 236 235-509 90-334 (839)
137 KOG2445 Nuclear pore complex c 99.9 2.1E-22 4.6E-27 166.1 25.4 285 30-427 8-318 (361)
138 KOG0302 Ribosome Assembly prot 99.9 4.3E-23 9.3E-28 174.7 21.6 219 228-512 207-436 (440)
139 KOG0321 WD40 repeat-containing 99.9 4.5E-22 9.8E-27 179.7 23.6 307 33-466 45-387 (720)
140 KOG0650 WD40 repeat nucleolar 99.9 6E-22 1.3E-26 177.6 22.9 322 92-511 392-732 (733)
141 KOG0646 WD40 repeat protein [G 99.9 3.7E-22 8E-27 173.9 20.8 235 33-382 79-319 (476)
142 KOG0267 Microtubule severing p 99.9 5.7E-24 1.2E-28 194.6 10.1 194 228-463 66-261 (825)
143 KOG0302 Ribosome Assembly prot 99.9 4.1E-22 8.8E-27 168.9 20.0 269 30-425 146-436 (440)
144 KOG0267 Microtubule severing p 99.9 8.7E-24 1.9E-28 193.4 10.6 235 229-508 25-261 (825)
145 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.8E-20 3.9E-25 171.6 31.7 293 47-450 1-300 (300)
146 KOG0646 WD40 repeat protein [G 99.9 2.3E-21 5E-26 169.0 23.1 255 203-500 59-334 (476)
147 KOG4283 Transcription-coupled 99.9 3.5E-21 7.7E-26 158.0 22.5 307 113-512 44-363 (397)
148 KOG0307 Vesicle coat complex C 99.9 9.8E-23 2.1E-27 196.4 15.6 202 229-466 113-323 (1049)
149 KOG2919 Guanine nucleotide-bin 99.9 2.2E-21 4.9E-26 161.2 21.4 287 176-510 54-365 (406)
150 KOG1445 Tumor-specific antigen 99.9 3.8E-21 8.2E-26 173.8 24.0 146 342-504 629-783 (1012)
151 KOG0290 Conserved WD40 repeat- 99.9 1.1E-20 2.3E-25 154.9 24.1 208 230-512 148-363 (364)
152 KOG4378 Nuclear protein COP1 [ 99.9 5.1E-21 1.1E-25 167.9 23.1 209 198-452 94-305 (673)
153 KOG1188 WD40 repeat protein [G 99.9 2.9E-21 6.3E-26 161.8 20.5 286 48-466 41-342 (376)
154 KOG1274 WD40 repeat protein [G 99.9 2.7E-20 5.8E-25 175.4 27.6 272 113-503 14-288 (933)
155 KOG1445 Tumor-specific antigen 99.9 4.2E-20 9.1E-25 167.1 26.8 204 283-511 629-841 (1012)
156 KOG1009 Chromatin assembly com 99.9 1.7E-20 3.6E-25 160.8 22.6 334 35-466 13-368 (434)
157 KOG0321 WD40 repeat-containing 99.9 1.6E-20 3.5E-25 169.8 23.4 271 228-512 96-389 (720)
158 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.6E-19 3.5E-24 165.3 30.4 231 235-513 33-278 (300)
159 KOG1009 Chromatin assembly com 99.9 2.5E-20 5.5E-25 159.7 21.7 307 113-509 14-366 (434)
160 KOG1034 Transcriptional repres 99.9 2.1E-20 4.5E-25 155.9 20.2 317 31-466 34-379 (385)
161 KOG4227 WD40 repeat protein [G 99.9 5.8E-20 1.2E-24 156.8 23.3 312 27-466 48-383 (609)
162 KOG1963 WD40 repeat protein [G 99.9 3E-19 6.5E-24 168.0 29.6 408 40-513 21-537 (792)
163 KOG2445 Nuclear pore complex c 99.9 1.5E-19 3.3E-24 149.4 24.0 271 228-513 9-317 (361)
164 KOG1538 Uncharacterized conser 99.9 5.1E-20 1.1E-24 167.5 21.3 270 37-466 14-289 (1081)
165 KOG0270 WD40 repeat-containing 99.9 3.8E-20 8.1E-25 160.5 19.6 258 47-432 192-454 (463)
166 KOG4328 WD40 protein [Function 99.9 9.3E-20 2E-24 158.6 19.9 251 229-512 183-448 (498)
167 KOG1034 Transcriptional repres 99.9 2.3E-20 4.9E-25 155.6 14.9 257 33-427 87-383 (385)
168 KOG0307 Vesicle coat complex C 99.8 2.4E-20 5.3E-25 180.1 16.1 298 176-512 11-325 (1049)
169 KOG0303 Actin-binding protein 99.8 4.7E-19 1E-23 151.4 21.9 293 18-451 10-320 (472)
170 KOG0270 WD40 repeat-containing 99.8 6.5E-19 1.4E-23 152.9 22.8 198 228-466 239-445 (463)
171 KOG1007 WD repeat protein TSSC 99.8 6.6E-19 1.4E-23 144.4 21.0 277 203-510 38-357 (370)
172 KOG0649 WD40 repeat protein [G 99.8 2E-18 4.4E-23 138.1 23.1 299 36-466 11-312 (325)
173 KOG1007 WD repeat protein TSSC 99.8 6.4E-19 1.4E-23 144.5 19.9 275 28-427 56-361 (370)
174 KOG1273 WD40 repeat protein [G 99.8 6E-19 1.3E-23 146.4 19.5 238 235-512 26-278 (405)
175 KOG0322 G-protein beta subunit 99.8 6.4E-19 1.4E-23 142.6 18.6 301 32-426 11-322 (323)
176 KOG4378 Nuclear protein COP1 [ 99.8 2.4E-19 5.2E-24 157.6 17.4 220 39-409 83-305 (673)
177 KOG4227 WD40 repeat protein [G 99.8 8.3E-19 1.8E-23 149.8 19.9 305 92-512 48-385 (609)
178 KOG0644 Uncharacterized conser 99.8 8.1E-20 1.8E-24 170.3 13.5 277 30-466 185-464 (1113)
179 KOG1524 WD40 repeat-containing 99.8 1.7E-18 3.6E-23 153.9 19.9 205 246-511 78-282 (737)
180 KOG1517 Guanine nucleotide bin 99.8 8.3E-18 1.8E-22 161.0 24.0 311 37-429 1066-1383(1387)
181 KOG1587 Cytoplasmic dynein int 99.8 2.9E-17 6.3E-22 154.5 26.1 288 13-429 223-518 (555)
182 KOG0642 Cell-cycle nuclear pro 99.8 1.2E-18 2.6E-23 155.8 15.9 273 30-429 289-563 (577)
183 KOG1587 Cytoplasmic dynein int 99.8 7.2E-17 1.6E-21 151.9 26.6 260 113-466 243-512 (555)
184 COG2319 FOG: WD40 repeat [Gene 99.8 3.1E-15 6.6E-20 144.7 37.7 328 31-512 61-398 (466)
185 KOG1538 Uncharacterized conser 99.8 2.5E-17 5.5E-22 150.2 20.6 268 113-511 13-290 (1081)
186 KOG0642 Cell-cycle nuclear pro 99.8 5.1E-18 1.1E-22 151.9 15.8 258 113-466 295-557 (577)
187 KOG1310 WD40 repeat protein [G 99.8 1.1E-17 2.5E-22 149.0 17.1 242 29-370 44-304 (758)
188 KOG1334 WD40 repeat protein [G 99.8 1E-17 2.3E-22 147.2 16.5 303 31-466 138-462 (559)
189 PRK11028 6-phosphogluconolacto 99.8 3.2E-15 6.9E-20 138.0 33.7 206 235-466 82-300 (330)
190 KOG0322 G-protein beta subunit 99.8 1.2E-17 2.6E-22 135.3 14.9 289 113-466 15-319 (323)
191 KOG0303 Actin-binding protein 99.8 4.5E-17 9.8E-22 139.4 19.1 212 30-370 76-295 (472)
192 KOG1240 Protein kinase contain 99.8 4.4E-16 9.5E-21 151.7 28.0 293 12-429 1029-1336(1431)
193 KOG4497 Uncharacterized conser 99.8 1.1E-16 2.4E-21 133.9 20.5 358 40-510 13-427 (447)
194 PRK11028 6-phosphogluconolacto 99.8 1.3E-15 2.8E-20 140.6 29.8 244 234-512 36-302 (330)
195 KOG1524 WD40 repeat-containing 99.8 1E-16 2.2E-21 142.7 20.9 224 229-512 101-346 (737)
196 KOG1523 Actin-related protein 99.7 5.4E-16 1.2E-20 129.4 20.4 225 35-372 10-239 (361)
197 KOG1963 WD40 repeat protein [G 99.7 3.9E-15 8.3E-20 140.7 27.2 305 30-466 200-534 (792)
198 PRK01742 tolB translocation pr 99.7 6.8E-16 1.5E-20 146.7 21.0 170 237-451 252-426 (429)
199 KOG2110 Uncharacterized conser 99.7 1.4E-14 3E-19 123.5 24.6 159 233-429 88-250 (391)
200 COG2319 FOG: WD40 repeat [Gene 99.7 3.3E-13 7.3E-18 130.4 38.0 318 36-512 110-440 (466)
201 KOG0771 Prolactin regulatory e 99.7 8E-16 1.7E-20 133.4 15.7 196 236-466 148-350 (398)
202 KOG0290 Conserved WD40 repeat- 99.7 3.3E-15 7.1E-20 123.1 17.8 208 32-365 147-361 (364)
203 KOG1188 WD40 repeat protein [G 99.7 3E-15 6.6E-20 126.1 18.0 266 29-427 64-346 (376)
204 KOG0771 Prolactin regulatory e 99.7 8.2E-16 1.8E-20 133.3 14.7 194 285-511 148-351 (398)
205 PRK01742 tolB translocation pr 99.7 2.9E-15 6.2E-20 142.5 19.9 218 230-497 201-427 (429)
206 KOG0644 Uncharacterized conser 99.7 2.1E-16 4.6E-21 147.8 11.0 269 113-511 191-465 (1113)
207 KOG2139 WD40 repeat protein [G 99.7 7.2E-14 1.6E-18 118.8 25.2 269 35-428 98-384 (445)
208 KOG4497 Uncharacterized conser 99.7 1.7E-14 3.6E-19 121.0 20.9 320 35-463 48-425 (447)
209 KOG1517 Guanine nucleotide bin 99.7 1.3E-14 2.8E-19 139.6 22.8 296 115-467 1067-1378(1387)
210 KOG1310 WD40 repeat protein [G 99.7 2.8E-15 6E-20 134.1 16.4 245 93-432 43-308 (758)
211 KOG1334 WD40 repeat protein [G 99.7 1.2E-15 2.7E-20 134.3 14.1 305 92-512 134-464 (559)
212 KOG1523 Actin-related protein 99.7 2.4E-14 5.2E-19 119.8 20.7 238 232-505 10-269 (361)
213 KOG1272 WD40-repeat-containing 99.6 9.7E-16 2.1E-20 134.2 11.0 266 115-508 132-402 (545)
214 KOG0649 WD40 repeat protein [G 99.6 2.3E-13 5E-18 109.5 22.3 246 176-465 15-269 (325)
215 KOG2139 WD40 repeat protein [G 99.6 9E-14 2E-18 118.2 20.6 242 233-504 99-364 (445)
216 KOG2110 Uncharacterized conser 99.6 1.8E-13 3.8E-18 116.9 21.8 232 233-512 6-246 (391)
217 KOG1240 Protein kinase contain 99.6 3.2E-13 6.9E-18 132.3 25.5 269 86-466 1034-1330(1431)
218 KOG3881 Uncharacterized conser 99.6 1.2E-13 2.7E-18 118.7 19.6 233 233-498 106-344 (412)
219 PRK03629 tolB translocation pr 99.6 3.3E-13 7.1E-18 128.1 24.6 215 231-496 197-428 (429)
220 PRK03629 tolB translocation pr 99.6 9.2E-13 2E-17 125.0 26.3 169 236-451 246-428 (429)
221 KOG1272 WD40-repeat-containing 99.6 2.9E-14 6.4E-19 125.0 12.7 298 6-466 92-405 (545)
222 KOG2315 Predicted translation 99.6 1.2E-11 2.6E-16 111.7 28.7 312 35-466 34-380 (566)
223 KOG2111 Uncharacterized conser 99.6 4.1E-11 8.9E-16 100.7 29.6 161 233-429 95-258 (346)
224 KOG2321 WD40 repeat protein [G 99.6 1.4E-12 3E-17 117.8 22.2 198 237-466 138-339 (703)
225 PF02239 Cytochrom_D1: Cytochr 99.5 2.1E-11 4.6E-16 112.1 29.7 292 116-513 40-346 (369)
226 PRK05137 tolB translocation pr 99.5 3.4E-12 7.4E-17 122.0 25.4 185 230-460 199-396 (435)
227 PRK02889 tolB translocation pr 99.5 1.1E-12 2.3E-17 124.7 21.7 219 230-496 193-425 (427)
228 PRK04922 tolB translocation pr 99.5 1.5E-12 3.2E-17 124.3 22.6 216 230-495 201-432 (433)
229 PF08662 eIF2A: Eukaryotic tra 99.5 9.8E-13 2.1E-17 109.6 17.1 147 237-427 10-179 (194)
230 PRK04922 tolB translocation pr 99.5 4.7E-12 1E-16 120.9 24.0 169 235-450 250-432 (433)
231 PRK02889 tolB translocation pr 99.5 5.2E-12 1.1E-16 120.1 23.4 172 235-451 242-425 (427)
232 KOG3881 Uncharacterized conser 99.5 2.9E-12 6.3E-17 110.4 19.1 166 235-432 151-325 (412)
233 KOG2394 WD40 protein DMR-N9 [G 99.5 4.5E-13 9.8E-18 119.9 14.6 188 242-450 183-384 (636)
234 COG2706 3-carboxymuconate cycl 99.5 7.1E-10 1.5E-14 95.5 32.8 206 236-466 92-317 (346)
235 PF08662 eIF2A: Eukaryotic tra 99.5 3.8E-12 8.1E-17 106.1 18.7 139 285-459 9-162 (194)
236 PF10282 Lactonase: Lactonase, 99.5 8E-10 1.7E-14 102.1 35.9 215 235-466 89-318 (345)
237 PF02239 Cytochrom_D1: Cytochr 99.5 1.5E-11 3.2E-16 113.2 23.7 288 39-470 40-347 (369)
238 KOG2394 WD40 protein DMR-N9 [G 99.5 3.3E-12 7.2E-17 114.5 17.7 237 235-495 126-384 (636)
239 COG2706 3-carboxymuconate cycl 99.5 6.2E-10 1.3E-14 95.9 30.5 293 13-429 17-323 (346)
240 KOG2111 Uncharacterized conser 99.5 9.2E-11 2E-15 98.6 24.9 106 244-370 148-257 (346)
241 PRK05137 tolB translocation pr 99.5 4.2E-11 9.2E-16 114.5 26.5 151 234-429 247-414 (435)
242 KOG2314 Translation initiation 99.5 2.8E-10 6E-15 102.8 28.4 317 39-512 214-571 (698)
243 PF10282 Lactonase: Lactonase, 99.4 1.2E-09 2.7E-14 100.8 33.5 275 34-427 35-322 (345)
244 KOG2041 WD40 repeat protein [G 99.4 2.2E-11 4.9E-16 113.0 20.4 302 33-466 12-333 (1189)
245 KOG1354 Serine/threonine prote 99.4 2.5E-11 5.5E-16 102.9 16.5 225 233-468 85-357 (433)
246 COG5354 Uncharacterized protei 99.4 2.1E-10 4.5E-15 102.6 22.0 323 34-463 31-422 (561)
247 TIGR02800 propeller_TolB tol-p 99.4 4.6E-10 1E-14 107.6 25.1 148 235-427 236-397 (417)
248 TIGR02800 propeller_TolB tol-p 99.4 2.2E-10 4.8E-15 109.9 22.8 186 231-462 188-386 (417)
249 PRK04792 tolB translocation pr 99.3 7.1E-10 1.5E-14 105.9 25.1 167 237-450 266-446 (448)
250 KOG0280 Uncharacterized conser 99.3 5.2E-10 1.1E-14 93.1 20.0 192 235-463 124-325 (339)
251 KOG2321 WD40 repeat protein [G 99.3 1.1E-09 2.5E-14 99.4 22.6 196 285-507 137-335 (703)
252 PF04762 IKI3: IKI3 family; I 99.3 2.7E-08 5.8E-13 102.1 35.5 359 34-461 74-507 (928)
253 PRK04792 tolB translocation pr 99.3 4.2E-10 9.1E-15 107.4 21.0 215 230-496 215-447 (448)
254 KOG2041 WD40 repeat protein [G 99.3 3.2E-10 6.9E-15 105.6 18.5 247 228-510 67-333 (1189)
255 PRK00178 tolB translocation pr 99.3 2.6E-09 5.6E-14 102.5 25.9 168 236-450 246-427 (430)
256 PRK00178 tolB translocation pr 99.3 1.1E-09 2.5E-14 105.0 23.2 187 229-461 195-394 (430)
257 KOG2315 Predicted translation 99.3 2.7E-09 5.8E-14 96.9 23.4 129 253-428 251-391 (566)
258 KOG4547 WD40 repeat-containing 99.3 1.4E-09 2.9E-14 99.4 21.5 187 242-466 3-216 (541)
259 KOG0974 WD-repeat protein WDR6 99.3 3.7E-10 8E-15 109.6 18.4 149 239-429 140-290 (967)
260 KOG1409 Uncharacterized conser 99.2 5.7E-10 1.2E-14 94.9 16.3 209 31-315 64-273 (404)
261 KOG4547 WD40 repeat-containing 99.2 1.6E-09 3.5E-14 98.9 20.0 207 125-428 4-221 (541)
262 PRK01029 tolB translocation pr 99.2 5.4E-09 1.2E-13 99.1 22.5 221 231-497 183-426 (428)
263 KOG1064 RAVE (regulator of V-A 99.2 8.3E-10 1.8E-14 112.9 15.5 198 33-380 2206-2408(2439)
264 KOG0974 WD-repeat protein WDR6 99.2 2.4E-09 5.2E-14 104.2 17.9 188 289-511 95-285 (967)
265 PRK01029 tolB translocation pr 99.1 6.3E-08 1.4E-12 91.8 26.5 176 236-451 234-425 (428)
266 KOG4532 WD40-like repeat conta 99.1 2.8E-08 6E-13 82.0 20.0 169 235-429 161-333 (344)
267 PF04762 IKI3: IKI3 family; I 99.1 7.7E-07 1.7E-11 91.6 35.0 201 280-512 208-454 (928)
268 COG4946 Uncharacterized protei 99.1 6.2E-07 1.3E-11 80.2 29.2 144 230-416 357-507 (668)
269 KOG0280 Uncharacterized conser 99.1 8.4E-08 1.8E-12 80.3 21.3 271 204-511 45-330 (339)
270 COG5170 CDC55 Serine/threonine 99.1 2.8E-09 6.1E-14 89.5 12.8 222 234-466 87-363 (460)
271 KOG1409 Uncharacterized conser 99.1 1.9E-08 4.1E-13 85.9 17.6 196 232-466 68-266 (404)
272 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.2E-06 2.7E-11 79.0 30.2 252 123-431 54-334 (352)
273 KOG2314 Translation initiation 99.0 1.6E-07 3.5E-12 85.5 23.5 291 31-427 246-573 (698)
274 KOG0309 Conserved WD40 repeat- 99.0 2.9E-09 6.4E-14 99.7 12.1 288 34-466 23-335 (1081)
275 TIGR02658 TTQ_MADH_Hv methylam 99.0 4.5E-07 9.7E-12 81.8 25.5 121 240-378 201-338 (352)
276 KOG4190 Uncharacterized conser 99.0 5E-09 1.1E-13 94.9 12.7 244 229-508 781-1030(1034)
277 KOG1912 WD40 repeat protein [G 99.0 1.7E-07 3.8E-12 88.7 23.0 413 32-504 52-540 (1062)
278 KOG0309 Conserved WD40 repeat- 99.0 3.4E-09 7.4E-14 99.2 11.7 186 235-456 70-261 (1081)
279 COG5354 Uncharacterized protei 99.0 3.8E-07 8.2E-12 82.3 23.2 326 113-512 33-393 (561)
280 PLN02919 haloacid dehalogenase 99.0 7.8E-07 1.7E-11 93.4 29.5 189 235-430 685-891 (1057)
281 TIGR03300 assembly_YfgL outer 99.0 1.3E-06 2.8E-11 82.5 27.5 182 246-466 147-334 (377)
282 KOG4190 Uncharacterized conser 98.9 9.2E-09 2E-13 93.3 10.9 295 29-466 729-1032(1034)
283 PLN02919 haloacid dehalogenase 98.9 3.1E-06 6.6E-11 89.0 30.7 223 234-466 625-884 (1057)
284 KOG3914 WD repeat protein WDR4 98.9 5.7E-08 1.2E-12 84.9 13.9 80 229-317 148-228 (390)
285 PRK04043 tolB translocation pr 98.9 4.5E-07 9.7E-12 85.5 21.2 179 234-460 189-387 (419)
286 PF15492 Nbas_N: Neuroblastoma 98.9 1.6E-06 3.5E-11 72.9 21.3 182 234-429 45-261 (282)
287 PRK04043 tolB translocation pr 98.9 1.5E-06 3.1E-11 82.1 23.7 177 283-504 189-386 (419)
288 COG4946 Uncharacterized protei 98.8 8.4E-07 1.8E-11 79.4 19.3 169 243-457 331-505 (668)
289 KOG0882 Cyclophilin-related pe 98.8 3.4E-07 7.3E-12 81.3 16.0 325 33-424 7-369 (558)
290 KOG4714 Nucleoporin [Nuclear s 98.8 1.7E-07 3.7E-12 77.1 12.9 72 283-369 181-254 (319)
291 KOG1064 RAVE (regulator of V-A 98.8 7.9E-08 1.7E-12 99.1 13.1 184 230-466 2206-2394(2439)
292 KOG1912 WD40 repeat protein [G 98.8 1.7E-06 3.8E-11 82.2 20.3 256 36-428 16-305 (1062)
293 KOG3914 WD repeat protein WDR4 98.8 1.9E-07 4E-12 81.8 12.7 158 235-432 65-228 (390)
294 KOG4532 WD40-like repeat conta 98.7 2.5E-06 5.4E-11 70.8 17.6 230 244-511 84-328 (344)
295 PF08450 SGL: SMP-30/Gluconola 98.7 4.2E-05 9.1E-10 67.4 27.2 145 234-415 87-243 (246)
296 PF08450 SGL: SMP-30/Gluconola 98.7 0.0001 2.2E-09 64.9 28.8 184 235-455 42-240 (246)
297 PF15492 Nbas_N: Neuroblastoma 98.7 4.2E-05 9.1E-10 64.7 24.3 231 238-512 3-257 (282)
298 KOG1832 HIV-1 Vpr-binding prot 98.7 2.7E-08 5.9E-13 95.4 5.6 220 30-414 1096-1318(1516)
299 PF07433 DUF1513: Protein of u 98.6 4.3E-05 9.4E-10 66.6 24.1 112 278-421 159-279 (305)
300 KOG2695 WD40 repeat protein [G 98.6 1.3E-07 2.7E-12 81.0 8.3 160 239-436 218-384 (425)
301 TIGR03300 assembly_YfgL outer 98.6 2.8E-05 6.1E-10 73.4 24.1 304 46-466 64-375 (377)
302 KOG0882 Cyclophilin-related pe 98.6 2.1E-06 4.5E-11 76.5 14.8 243 229-512 50-303 (558)
303 PF00400 WD40: WD domain, G-be 98.6 9.5E-08 2.1E-12 56.4 4.4 34 30-63 6-39 (39)
304 KOG2695 WD40 repeat protein [G 98.5 4.6E-07 1E-11 77.7 8.6 137 231-383 251-389 (425)
305 PF07433 DUF1513: Protein of u 98.5 0.0002 4.3E-09 62.6 23.9 194 238-466 56-282 (305)
306 KOG4714 Nucleoporin [Nuclear s 98.5 7.5E-06 1.6E-10 67.7 13.7 72 342-428 181-255 (319)
307 PF13360 PQQ_2: PQQ-like domai 98.5 0.0001 2.2E-09 64.7 22.2 154 244-430 77-233 (238)
308 KOG1920 IkappaB kinase complex 98.4 4.5E-05 9.8E-10 76.8 21.1 239 233-512 69-320 (1265)
309 KOG2114 Vacuolar assembly/sort 98.4 0.00017 3.6E-09 70.2 23.7 127 232-379 125-252 (933)
310 KOG1920 IkappaB kinase complex 98.4 0.00039 8.5E-09 70.4 26.3 112 236-370 199-323 (1265)
311 PF00400 WD40: WD domain, G-be 98.4 1E-06 2.2E-11 51.9 5.1 34 276-310 6-39 (39)
312 PF11768 DUF3312: Protein of u 98.3 0.0016 3.5E-08 61.2 27.5 73 279-370 257-330 (545)
313 PRK11138 outer membrane biogen 98.3 0.001 2.2E-08 63.1 27.5 183 246-466 162-349 (394)
314 KOG2066 Vacuolar assembly/sort 98.3 2.1E-05 4.5E-10 75.6 14.8 192 32-369 36-233 (846)
315 KOG3617 WD40 and TPR repeat-co 98.3 3.8E-05 8.3E-10 74.2 16.3 72 440-511 303-381 (1416)
316 KOG1645 RING-finger-containing 98.3 0.0002 4.3E-09 63.4 19.0 36 113-149 194-229 (463)
317 KOG1008 Uncharacterized conser 98.2 2.1E-06 4.6E-11 80.0 6.5 211 34-370 55-276 (783)
318 KOG2066 Vacuolar assembly/sort 98.2 0.00014 3.1E-09 70.0 17.7 149 241-427 80-233 (846)
319 PRK11138 outer membrane biogen 98.2 0.00053 1.2E-08 65.1 21.6 137 243-426 256-393 (394)
320 KOG3621 WD40 repeat-containing 98.1 0.00061 1.3E-08 65.0 19.7 124 33-262 31-155 (726)
321 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0069 1.5E-07 56.5 26.4 251 233-503 43-345 (353)
322 PF11768 DUF3312: Protein of u 98.1 0.00041 8.9E-09 65.0 17.6 71 341-429 260-331 (545)
323 KOG2114 Vacuolar assembly/sort 98.1 0.0019 4.2E-08 63.1 22.3 156 244-429 77-245 (933)
324 KOG1275 PAB-dependent poly(A) 98.0 0.00013 2.8E-09 71.3 14.2 180 295-512 148-340 (1118)
325 KOG1008 Uncharacterized conser 98.0 1.9E-06 4.1E-11 80.3 1.8 166 229-428 99-276 (783)
326 PF06977 SdiA-regulated: SdiA- 98.0 0.0042 9E-08 53.7 21.7 174 234-424 66-247 (248)
327 KOG1275 PAB-dependent poly(A) 98.0 0.00023 5.1E-09 69.6 14.3 118 228-368 213-341 (1118)
328 PF06977 SdiA-regulated: SdiA- 97.9 0.0056 1.2E-07 52.9 21.1 128 231-366 116-247 (248)
329 PF13360 PQQ_2: PQQ-like domai 97.9 0.0026 5.5E-08 55.8 19.8 143 251-431 1-144 (238)
330 COG0823 TolB Periplasmic compo 97.9 0.00043 9.4E-09 65.1 15.2 184 232-458 192-387 (425)
331 PF04053 Coatomer_WDAD: Coatom 97.9 0.0082 1.8E-07 56.9 23.6 217 232-511 32-259 (443)
332 KOG3617 WD40 and TPR repeat-co 97.9 0.00031 6.7E-09 68.2 14.1 105 238-369 21-131 (1416)
333 PRK02888 nitrous-oxide reducta 97.9 0.001 2.2E-08 64.1 16.7 109 341-466 321-460 (635)
334 COG0823 TolB Periplasmic compo 97.9 0.00079 1.7E-08 63.4 16.0 186 281-504 192-388 (425)
335 PF08553 VID27: VID27 cytoplas 97.9 0.0041 9E-08 62.3 21.2 144 295-466 494-644 (794)
336 PF14583 Pectate_lyase22: Olig 97.8 0.0055 1.2E-07 55.6 20.0 105 341-461 188-303 (386)
337 KOG1832 HIV-1 Vpr-binding prot 97.8 3.3E-05 7.1E-10 75.1 5.7 145 276-456 1096-1246(1516)
338 PF04841 Vps16_N: Vps16, N-ter 97.8 0.018 3.8E-07 54.6 23.4 178 254-466 62-242 (410)
339 PF08596 Lgl_C: Lethal giant l 97.7 0.0098 2.1E-07 55.6 20.8 291 37-368 3-334 (395)
340 PF08596 Lgl_C: Lethal giant l 97.7 0.02 4.3E-07 53.6 22.7 211 228-466 82-332 (395)
341 KOG1897 Damage-specific DNA bi 97.7 0.067 1.5E-06 53.9 31.5 227 244-510 684-938 (1096)
342 KOG3621 WD40 repeat-containing 97.7 0.00024 5.1E-09 67.6 9.9 109 403-511 39-150 (726)
343 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.042 9.2E-07 51.2 25.5 278 113-457 43-344 (353)
344 PF14655 RAB3GAP2_N: Rab3 GTPa 97.6 0.054 1.2E-06 50.6 26.8 48 336-384 303-351 (415)
345 PF08553 VID27: VID27 cytoplas 97.6 0.0043 9.4E-08 62.2 17.4 102 247-369 545-647 (794)
346 KOG1645 RING-finger-containing 97.6 0.0019 4.2E-08 57.4 12.6 88 276-380 188-277 (463)
347 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.014 3E-07 42.6 13.6 64 233-308 43-110 (111)
348 KOG4649 PQQ (pyrrolo-quinoline 97.4 0.042 9.1E-07 46.3 18.1 126 290-450 19-145 (354)
349 PF04053 Coatomer_WDAD: Coatom 97.4 0.0094 2E-07 56.5 16.3 180 280-509 31-218 (443)
350 PF06433 Me-amine-dh_H: Methyl 97.3 0.04 8.7E-07 49.2 17.9 212 117-380 99-330 (342)
351 PF14583 Pectate_lyase22: Olig 97.3 0.13 2.7E-06 47.1 24.7 175 252-466 167-377 (386)
352 smart00320 WD40 WD40 repeats. 97.3 0.00037 8.1E-09 40.3 3.9 32 32-63 9-40 (40)
353 PF04841 Vps16_N: Vps16, N-ter 97.3 0.17 3.6E-06 48.1 29.5 193 233-456 81-275 (410)
354 COG3490 Uncharacterized protei 97.3 0.061 1.3E-06 46.1 17.4 201 284-513 70-309 (366)
355 COG3391 Uncharacterized conser 97.3 0.13 2.8E-06 48.5 21.9 189 235-466 76-279 (381)
356 PF03178 CPSF_A: CPSF A subuni 97.3 0.15 3.2E-06 46.9 22.1 175 253-466 62-261 (321)
357 PF03178 CPSF_A: CPSF A subuni 97.2 0.16 3.5E-06 46.7 22.4 188 295-511 43-262 (321)
358 KOG4640 Anaphase-promoting com 97.2 0.002 4.3E-08 60.9 8.7 76 233-318 21-98 (665)
359 cd00216 PQQ_DH Dehydrogenases 97.2 0.27 5.9E-06 48.2 24.6 25 408-432 405-429 (488)
360 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0016 3.5E-08 39.4 5.2 31 34-64 10-40 (47)
361 PRK02888 nitrous-oxide reducta 97.0 0.059 1.3E-06 52.4 17.1 64 402-466 325-400 (635)
362 PF00780 CNH: CNH domain; Int 97.0 0.23 5.1E-06 44.5 23.9 230 242-513 5-254 (275)
363 PF06433 Me-amine-dh_H: Methyl 97.0 0.17 3.8E-06 45.3 18.2 280 136-466 17-316 (342)
364 KOG4640 Anaphase-promoting com 96.9 0.0036 7.8E-08 59.2 7.8 88 401-495 24-115 (665)
365 KOG2395 Protein involved in va 96.9 0.052 1.1E-06 50.7 14.8 140 295-464 347-495 (644)
366 COG3490 Uncharacterized protei 96.8 0.15 3.2E-06 43.9 15.4 195 239-466 120-344 (366)
367 PF05694 SBP56: 56kDa selenium 96.8 0.46 9.9E-06 44.1 19.7 119 252-376 221-349 (461)
368 smart00320 WD40 WD40 repeats. 96.8 0.0025 5.4E-08 36.5 3.8 34 276-310 7-40 (40)
369 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.13 2.9E-06 37.6 12.6 67 284-369 2-71 (111)
370 KOG2395 Protein involved in va 96.7 0.068 1.5E-06 50.0 13.7 102 247-369 398-500 (644)
371 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0051 1.1E-07 37.2 4.5 30 113-144 12-41 (47)
372 PRK13616 lipoprotein LpqB; Pro 96.5 0.077 1.7E-06 52.6 14.3 139 341-504 350-515 (591)
373 PRK13616 lipoprotein LpqB; Pro 96.5 0.36 7.7E-06 48.1 18.8 202 233-466 350-564 (591)
374 PF00780 CNH: CNH domain; Int 96.5 0.58 1.2E-05 41.9 27.1 124 235-375 38-170 (275)
375 PF10647 Gmad1: Lipoprotein Lp 96.5 0.21 4.5E-06 43.9 15.6 144 342-504 25-184 (253)
376 PF10168 Nup88: Nuclear pore c 96.3 1.5 3.3E-05 44.7 23.8 83 233-315 85-182 (717)
377 COG3386 Gluconolactonase [Carb 96.2 0.87 1.9E-05 41.1 21.5 97 341-454 163-269 (307)
378 KOG1916 Nuclear protein, conta 96.1 0.0092 2E-07 59.0 5.4 116 203-328 151-282 (1283)
379 cd00216 PQQ_DH Dehydrogenases 96.1 1.6 3.4E-05 42.9 27.8 28 127-154 111-138 (488)
380 KOG1897 Damage-specific DNA bi 96.0 2.1 4.6E-05 43.8 30.7 101 397-504 774-887 (1096)
381 PF02897 Peptidase_S9_N: Proly 96.0 1.6 3.5E-05 41.9 25.9 34 36-69 124-162 (414)
382 COG3204 Uncharacterized protei 95.9 1 2.2E-05 39.3 20.6 185 113-383 86-275 (316)
383 KOG4499 Ca2+-binding protein R 95.9 0.66 1.4E-05 38.9 14.1 143 232-407 108-263 (310)
384 PF14870 PSII_BNR: Photosynthe 95.8 1.3 2.9E-05 39.8 27.3 152 341-511 145-301 (302)
385 PF14870 PSII_BNR: Photosynthe 95.8 1.4 3E-05 39.6 27.8 238 232-510 16-257 (302)
386 PF12234 Rav1p_C: RAVE protein 95.7 0.23 5E-06 48.9 12.9 109 403-512 35-154 (631)
387 KOG2079 Vacuolar assembly/sort 95.6 0.087 1.9E-06 53.7 9.7 103 295-427 100-203 (1206)
388 PF10168 Nup88: Nuclear pore c 95.4 0.44 9.5E-06 48.5 14.2 92 394-512 81-177 (717)
389 PF15390 DUF4613: Domain of un 95.3 1.7 3.6E-05 41.9 16.4 70 237-313 117-187 (671)
390 COG3386 Gluconolactonase [Carb 95.3 2.1 4.5E-05 38.7 22.3 91 280-383 161-255 (307)
391 PF02897 Peptidase_S9_N: Proly 95.3 2.9 6.3E-05 40.1 22.8 114 235-370 126-261 (414)
392 KOG4649 PQQ (pyrrolo-quinoline 95.2 1.7 3.8E-05 37.1 26.5 63 240-311 101-164 (354)
393 KOG2079 Vacuolar assembly/sort 95.0 0.12 2.6E-06 52.6 8.5 97 351-463 98-198 (1206)
394 PF12234 Rav1p_C: RAVE protein 94.8 1.4 3.1E-05 43.7 15.1 116 235-369 32-156 (631)
395 PF10313 DUF2415: Uncharacteri 94.6 0.15 3.2E-06 29.9 4.9 33 282-314 1-35 (43)
396 PF10647 Gmad1: Lipoprotein Lp 94.4 3.3 7.1E-05 36.5 19.8 155 234-419 25-187 (253)
397 COG3391 Uncharacterized conser 94.4 4.8 0.0001 38.1 22.5 157 235-429 118-285 (381)
398 PRK13684 Ycf48-like protein; P 94.2 4.5 9.8E-05 37.4 17.3 153 341-512 173-329 (334)
399 PF10313 DUF2415: Uncharacteri 94.2 0.19 4E-06 29.5 4.7 31 36-66 1-34 (43)
400 PF08728 CRT10: CRT10; InterP 94.1 2.8 6E-05 42.2 15.4 74 233-311 164-245 (717)
401 PF10214 Rrn6: RNA polymerase 93.9 9.7 0.00021 39.9 22.6 75 233-314 204-278 (765)
402 PF08728 CRT10: CRT10; InterP 93.9 7.2 0.00016 39.4 17.7 166 244-426 49-245 (717)
403 KOG3630 Nuclear pore complex, 93.7 0.9 1.9E-05 47.1 11.4 153 233-415 101-261 (1405)
404 TIGR02604 Piru_Ver_Nterm putat 93.6 3.8 8.2E-05 38.5 15.2 155 282-461 14-204 (367)
405 KOG4460 Nuclear pore complex, 93.5 1.5 3.2E-05 41.5 11.6 88 399-512 105-196 (741)
406 PLN00033 photosystem II stabil 93.4 7.2 0.00016 36.9 17.6 149 342-512 240-397 (398)
407 KOG4659 Uncharacterized conser 93.4 13 0.00029 39.8 19.5 70 344-416 596-680 (1899)
408 KOG2444 WD40 repeat protein [G 93.3 0.44 9.5E-06 39.8 7.1 66 244-316 70-136 (238)
409 PF05694 SBP56: 56kDa selenium 93.2 7.4 0.00016 36.6 20.9 233 243-503 86-391 (461)
410 COG3204 Uncharacterized protei 93.2 5.5 0.00012 35.0 18.6 212 277-511 81-309 (316)
411 PF15390 DUF4613: Domain of un 93.1 3.3 7.2E-05 40.0 13.5 156 233-427 20-186 (671)
412 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.0 10 0.00022 37.6 28.7 28 127-154 121-148 (527)
413 PF14761 HPS3_N: Hermansky-Pud 92.9 1.6 3.5E-05 36.4 9.9 102 410-512 29-161 (215)
414 KOG3630 Nuclear pore complex, 92.3 3.3 7.2E-05 43.3 13.1 151 342-502 102-260 (1405)
415 PF07569 Hira: TUP1-like enhan 92.2 1.1 2.3E-05 38.4 8.5 79 289-370 18-96 (219)
416 KOG2444 WD40 repeat protein [G 91.7 0.59 1.3E-05 39.0 6.0 59 408-466 69-128 (238)
417 PF14781 BBS2_N: Ciliary BBSom 91.5 5.1 0.00011 30.6 11.7 80 39-147 2-84 (136)
418 PF03022 MRJP: Major royal jel 91.1 11 0.00025 33.8 16.1 191 254-456 35-251 (287)
419 KOG2377 Uncharacterized conser 90.9 10 0.00022 35.6 13.4 127 236-382 26-153 (657)
420 COG4590 ABC-type uncharacteriz 90.6 3.3 7.1E-05 38.6 10.2 168 230-431 218-390 (733)
421 TIGR02604 Piru_Ver_Nterm putat 90.6 15 0.00032 34.6 15.1 112 234-357 15-140 (367)
422 PF13449 Phytase-like: Esteras 90.5 14 0.00031 34.0 22.7 119 233-357 20-163 (326)
423 PRK13684 Ycf48-like protein; P 90.2 15 0.00033 33.9 25.7 106 400-509 175-283 (334)
424 PF07995 GSDH: Glucose / Sorbo 90.2 15 0.00033 33.9 24.4 58 408-465 270-330 (331)
425 KOG2280 Vacuolar assembly/sort 89.9 24 0.00051 35.6 18.5 68 234-309 85-152 (829)
426 PF14655 RAB3GAP2_N: Rab3 GTPa 89.6 4.3 9.4E-05 38.3 10.5 37 33-69 305-341 (415)
427 COG4590 ABC-type uncharacteriz 89.4 2.1 4.6E-05 39.7 8.0 156 341-512 221-384 (733)
428 PF07569 Hira: TUP1-like enhan 89.3 2.6 5.6E-05 36.1 8.2 71 240-313 18-96 (219)
429 PF05096 Glu_cyclase_2: Glutam 89.2 14 0.00031 32.3 18.1 113 283-430 46-160 (264)
430 KOG2377 Uncharacterized conser 89.1 20 0.00044 33.7 17.1 39 30-68 61-99 (657)
431 COG3823 Glutamine cyclotransfe 89.1 10 0.00022 31.6 10.7 31 125-155 55-87 (262)
432 PF13449 Phytase-like: Esteras 88.7 20 0.00043 33.1 16.8 167 282-458 20-232 (326)
433 COG5167 VID27 Protein involved 88.6 10 0.00022 36.1 11.8 139 349-510 476-628 (776)
434 PF05096 Glu_cyclase_2: Glutam 88.3 17 0.00037 31.9 21.7 186 232-458 44-249 (264)
435 PF07995 GSDH: Glucose / Sorbo 88.1 22 0.00047 32.9 26.7 26 37-63 3-28 (331)
436 PF14727 PHTB1_N: PTHB1 N-term 87.4 27 0.00059 33.2 30.5 58 245-312 145-204 (418)
437 KOG4441 Proteins containing BT 86.8 37 0.0008 34.2 18.3 57 408-466 475-537 (571)
438 PF12657 TFIIIC_delta: Transcr 86.6 6.4 0.00014 32.2 8.7 30 399-428 87-122 (173)
439 KOG4499 Ca2+-binding protein R 86.5 19 0.00041 30.6 15.8 96 343-450 160-263 (310)
440 PHA02713 hypothetical protein; 86.4 25 0.00053 35.3 14.3 22 408-429 512-535 (557)
441 KOG1900 Nuclear pore complex, 86.2 32 0.0007 37.2 14.9 80 233-313 179-273 (1311)
442 TIGR03606 non_repeat_PQQ dehyd 85.9 34 0.00075 33.0 18.5 59 233-292 30-89 (454)
443 PF12657 TFIIIC_delta: Transcr 85.5 11 0.00024 30.9 9.6 33 113-145 86-122 (173)
444 COG4257 Vgb Streptogramin lyas 85.1 25 0.00055 30.8 19.1 185 235-456 106-291 (353)
445 COG5167 VID27 Protein involved 84.6 20 0.00043 34.3 11.4 54 407-461 571-624 (776)
446 PHA02713 hypothetical protein; 84.1 22 0.00049 35.6 12.8 23 292-315 512-536 (557)
447 PF07676 PD40: WD40-like Beta 83.7 3.3 7.1E-05 23.7 4.2 20 485-504 8-27 (39)
448 KOG2247 WD40 repeat-containing 82.4 0.25 5.4E-06 46.0 -1.3 138 282-455 35-174 (615)
449 PF03022 MRJP: Major royal jel 81.0 42 0.00091 30.2 16.5 30 283-313 187-216 (287)
450 PF10214 Rrn6: RNA polymerase 80.2 83 0.0018 33.2 27.4 137 232-370 79-233 (765)
451 TIGR03075 PQQ_enz_alc_DH PQQ-d 79.9 68 0.0015 32.0 21.7 27 405-431 308-337 (527)
452 PF07676 PD40: WD40-like Beta 79.2 9.3 0.0002 21.7 5.1 30 280-309 7-38 (39)
453 PF12341 DUF3639: Protein of u 78.8 5.1 0.00011 20.8 3.2 26 36-63 2-27 (27)
454 PF07250 Glyoxal_oxid_N: Glyox 78.8 39 0.00084 29.4 10.6 110 346-465 72-194 (243)
455 TIGR02276 beta_rpt_yvtn 40-res 78.7 9.4 0.0002 22.0 5.2 30 350-380 1-32 (42)
456 KOG4441 Proteins containing BT 76.5 90 0.0019 31.5 20.3 24 292-316 427-456 (571)
457 KOG2247 WD40 repeat-containing 76.2 0.57 1.2E-05 43.8 -1.1 140 343-505 37-179 (615)
458 KOG1900 Nuclear pore complex, 75.9 81 0.0018 34.4 13.6 86 341-429 179-274 (1311)
459 PF11715 Nup160: Nucleoporin N 75.7 12 0.00025 37.6 7.9 31 125-155 229-259 (547)
460 PF08801 Nucleoporin_N: Nup133 75.4 45 0.00098 32.1 11.5 30 400-429 192-221 (422)
461 KOG2280 Vacuolar assembly/sort 74.1 1.1E+02 0.0023 31.3 17.6 173 253-466 64-242 (829)
462 PRK10115 protease 2; Provision 73.7 1.2E+02 0.0026 31.6 23.9 111 235-369 129-255 (686)
463 PF01436 NHL: NHL repeat; Int 72.4 9.9 0.00022 19.8 3.6 25 38-62 4-28 (28)
464 KOG4659 Uncharacterized conser 71.7 1.7E+02 0.0036 32.4 21.9 24 59-82 283-306 (1899)
465 COG5276 Uncharacterized conser 71.3 76 0.0016 28.3 14.7 144 342-506 88-234 (370)
466 PF14781 BBS2_N: Ciliary BBSom 71.3 45 0.00098 25.7 12.4 71 287-371 4-83 (136)
467 KOG1983 Tomosyn and related SN 71.2 1.3E+02 0.0028 32.8 14.3 33 35-67 35-67 (993)
468 PF14727 PHTB1_N: PTHB1 N-term 70.8 1E+02 0.0022 29.5 27.1 58 295-369 146-204 (418)
469 PF11635 Med16: Mediator compl 70.3 1.5E+02 0.0032 31.3 21.5 33 400-432 262-294 (753)
470 KOG4460 Nuclear pore complex, 69.3 1.2E+02 0.0025 29.6 15.7 84 282-370 104-199 (741)
471 PF11715 Nup160: Nucleoporin N 69.0 21 0.00046 35.8 8.0 34 282-316 215-252 (547)
472 PF02333 Phytase: Phytase; In 68.3 1.1E+02 0.0023 28.9 24.5 154 253-429 127-292 (381)
473 COG3292 Predicted periplasmic 68.1 1.3E+02 0.0028 29.7 20.2 109 401-512 379-489 (671)
474 COG3823 Glutamine cyclotransfe 67.7 74 0.0016 26.8 13.5 66 243-316 55-123 (262)
475 KOG1916 Nuclear protein, conta 67.3 3.5 7.6E-05 42.0 2.0 97 12-144 153-265 (1283)
476 COG4257 Vgb Streptogramin lyas 65.6 97 0.0021 27.4 19.4 194 234-466 63-258 (353)
477 KOG3616 Selective LIM binding 64.0 1.8E+02 0.0038 29.8 20.1 35 33-67 12-46 (1636)
478 COG5290 IkappaB kinase complex 63.4 1.9E+02 0.0041 30.0 15.8 71 285-370 250-325 (1243)
479 PHA03098 kelch-like protein; P 63.1 1.7E+02 0.0037 29.3 15.0 23 292-315 342-369 (534)
480 PRK13615 lipoprotein LpqB; Pro 63.0 1.7E+02 0.0037 29.3 13.7 140 344-503 337-487 (557)
481 PF11725 AvrE: Pathogenicity f 60.7 3.1E+02 0.0066 31.5 22.0 64 400-466 705-768 (1774)
482 PF14761 HPS3_N: Hermansky-Pud 60.3 1.1E+02 0.0023 26.0 18.5 31 233-263 135-165 (215)
483 PHA03098 kelch-like protein; P 60.3 1.9E+02 0.0041 29.0 17.5 22 408-429 487-513 (534)
484 PF11725 AvrE: Pathogenicity f 59.7 3.2E+02 0.0069 31.3 17.4 79 233-314 438-518 (1774)
485 PF03088 Str_synth: Strictosid 59.4 61 0.0013 23.0 7.6 42 302-360 35-76 (89)
486 TIGR03606 non_repeat_PQQ dehyd 59.3 1.8E+02 0.0039 28.3 13.6 61 282-352 30-90 (454)
487 smart00564 PQQ beta-propeller 58.6 26 0.00056 18.7 3.8 23 128-150 8-30 (33)
488 PF01731 Arylesterase: Arylest 55.4 42 0.00091 23.6 5.1 26 402-427 58-84 (86)
489 PHA02790 Kelch-like protein; P 55.0 2.2E+02 0.0048 28.1 16.9 23 292-315 362-387 (480)
490 COG5290 IkappaB kinase complex 54.5 2.4E+02 0.0052 29.3 11.5 26 40-65 251-281 (1243)
491 COG4247 Phy 3-phytase (myo-ino 54.4 1.5E+02 0.0032 25.9 12.6 146 289-466 63-221 (364)
492 PRK13613 lipoprotein LpqB; Pro 54.3 2.5E+02 0.0055 28.5 13.5 144 342-504 364-525 (599)
493 TIGR03118 PEPCTERM_chp_1 conse 52.6 1.8E+02 0.0039 26.3 20.3 162 247-432 104-284 (336)
494 TIGR02171 Fb_sc_TIGR02171 Fibr 52.6 99 0.0021 32.6 9.0 54 400-453 352-411 (912)
495 PF13570 PQQ_3: PQQ-like domai 52.5 26 0.00057 20.0 3.3 21 408-428 20-40 (40)
496 PF07250 Glyoxal_oxid_N: Glyox 52.1 1.6E+02 0.0035 25.7 10.4 122 287-429 72-199 (243)
497 KOG1898 Splicing factor 3b, su 50.7 3.6E+02 0.0077 29.2 26.2 32 35-66 582-619 (1205)
498 PF01731 Arylesterase: Arylest 46.9 83 0.0018 22.1 5.5 31 282-312 54-84 (86)
499 COG3292 Predicted periplasmic 46.6 3.1E+02 0.0067 27.3 18.5 25 484-509 417-441 (671)
500 PRK13614 lipoprotein LpqB; Pro 46.2 3.3E+02 0.0072 27.5 14.3 143 342-504 344-504 (573)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-52 Score=352.48 Aligned_cols=328 Identities=14% Similarity=0.259 Sum_probs=279.3
Q ss_pred cccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccc
Q 010287 27 TAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (513)
Q Consensus 27 ~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (513)
+.....+|.++|.|++|+|+|..||+|+.|.++|+||..+.... ....+|.
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~-----------------------~t~KgH~------ 157 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL-----------------------FTCKGHK------ 157 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc-----------------------eeecCCc------
Confidence 55567899999999999999999999999999999998876642 5678898
Q ss_pred ccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (513)
Q Consensus 107 ~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 186 (513)
..|.|++|+| |+..|++|+.||+|++||.++++..-.
T Consensus 158 ------~WVlcvawsP--Dgk~iASG~~dg~I~lwdpktg~~~g~----------------------------------- 194 (480)
T KOG0271|consen 158 ------NWVLCVAWSP--DGKKIASGSKDGSIRLWDPKTGQQIGR----------------------------------- 194 (480)
T ss_pred ------cEEEEEEECC--CcchhhccccCCeEEEecCCCCCcccc-----------------------------------
Confidence 9999999955 899999999999999999998863210
Q ss_pred ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-----CCCEEEEE-cCCeEEEEEc
Q 010287 187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-----DGETFISA-DDLRINLWNL 260 (513)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~l~s~-~d~~i~vwd~ 260 (513)
.+.+|...|++++|.| ..++|+++ .||.|+|||+
T Consensus 195 ----------------------------------------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~ 234 (480)
T KOG0271|consen 195 ----------------------------------------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT 234 (480)
T ss_pred ----------------------------------------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEc
Confidence 1479999999999965 57789998 6999999999
Q ss_pred CCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccccccc
Q 010287 261 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 340 (513)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (513)
..+.... .+.+|+.+|+|+.|-.++ +|++++.|++|++|+...|..+ +. +++|.
T Consensus 235 ~~~~~~~--------~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~----r~------------lkGHa 288 (480)
T KOG0271|consen 235 KLGTCVR--------TLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLC----RE------------LKGHA 288 (480)
T ss_pred cCceEEE--------EeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHH----Hh------------hcccc
Confidence 8555443 568999999999998775 9999999999999999887763 23 45666
Q ss_pred ccEEEEEEe-----------ec-------------------------CCEEEEEeC-CeEEEEEccCCCCCeeeeecccc
Q 010287 341 ASISDIKFA-----------RN-------------------------GRHILSRDY-MTLKLWDINMDSGPVATFQVHEH 383 (513)
Q Consensus 341 ~~v~~i~~s-----------p~-------------------------~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~ 383 (513)
..|+.++.+ |. ++.|++|+| .++.+|+-....+++..+.+|+.
T Consensus 289 hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~ 368 (480)
T KOG0271|consen 289 HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQA 368 (480)
T ss_pred hheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhh
Confidence 778888776 22 345999987 99999998876779999999998
Q ss_pred cccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCe
Q 010287 384 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 463 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 463 (513)
.+ ..+.||||++++|+++-|..|++|+..+| +.+.++.+|-.+|+.++|+.|.++|++|+.|.+
T Consensus 369 lV---------------n~V~fSPd~r~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsT 432 (480)
T KOG0271|consen 369 LV---------------NHVSFSPDGRYIASASFDKSVKLWDGRTG-KFLASFRGHVAAVYQVAWSADSRLLVSGSKDST 432 (480)
T ss_pred he---------------eeEEECCCccEEEEeecccceeeeeCCCc-chhhhhhhccceeEEEEeccCccEEEEcCCCce
Confidence 74 48999999999999999999999999999 555899999999999999999999999999999
Q ss_pred EEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEE
Q 010287 464 VRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 511 (513)
Q Consensus 464 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~ 511 (513)
+++ |+.....+..+..+|...|.++.|+|||..+++|+.|.++-+
T Consensus 433 LKv---w~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~l 477 (480)
T KOG0271|consen 433 LKV---WDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRL 477 (480)
T ss_pred EEE---EEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEe
Confidence 999 555544455566679999999999999999999886655443
No 2
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-52 Score=347.96 Aligned_cols=429 Identities=63% Similarity=1.000 Sum_probs=368.3
Q ss_pred cccccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCc
Q 010287 10 AAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE 89 (513)
Q Consensus 10 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (513)
.+...+.|++.|+|+.. +...+-|++|.|...|.+||||..+|+|.+|..+.... .+
T Consensus 5 ~~~~~~~w~f~~~~~~~-----vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~------------------~e 61 (433)
T KOG1354|consen 5 GKNEILMWKFSQVFGLE-----VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK------------------GE 61 (433)
T ss_pred Ccchhhhhhhhhhhcce-----echhcceeeEEeecccceEeecCCCCeEEEeecccccc------------------cc
Confidence 45678899999998843 56779999999999999999999999999998654332 27
Q ss_pred ceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCccc
Q 010287 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (513)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (513)
|.+...++.|+|||+|+++++++..|+.++|++..+...++..+.|++|++|.+.....+. -..+....
T Consensus 62 y~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~-~~~~~~~~---------- 130 (433)
T KOG1354|consen 62 YNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKK-EGYNLPEE---------- 130 (433)
T ss_pred eeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeecccccc-cccccccc----------
Confidence 8899999999999999999999999999999998888899999999999999998754332 11111000
Q ss_pred CcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEE
Q 010287 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 249 (513)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 249 (513)
..++.-.++++..+...+......+++.+..+|+..|+++.++.|++.+++
T Consensus 131 -----------------------------~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS 181 (433)
T KOG1354|consen 131 -----------------------------GPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS 181 (433)
T ss_pred -----------------------------CCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence 123455678888888888889999999999999999999999999999999
Q ss_pred EcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccC
Q 010287 250 ADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 329 (513)
Q Consensus 250 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 329 (513)
++|=.|.+|+++...+.+.+++++|..+.....-|++..|+|...++|+..+..|+|++.|+|...+++...+.++.+.+
T Consensus 182 ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 182 ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred CCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC
Q 010287 330 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 409 (513)
Q Consensus 330 ~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 409 (513)
+..+.++.+....|..+.|+++|+++++.+.-+|++||+.++.+++.+++.|......++.+|+++++++-+.++|+.++
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCee
Q 010287 410 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLL 489 (513)
Q Consensus 410 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~ 489 (513)
.+++||+..+.+++|++..+.+...+++....+...-... .-+.+.++ +...+.+..+..+++...|.
T Consensus 342 ~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~-k~~~V~~~-----------g~r~~~~~~vd~ldf~kkil 409 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVL-KLRLVSSS-----------GKRKRDEISVDALDFRKKIL 409 (433)
T ss_pred ceEecccccceEEEecCCCCcceeecccccccCCcccccc-cceeeecC-----------CCccccccccchhhhhhHHH
Confidence 9999999999999999888766666666555442111111 11122222 22222355667778899999
Q ss_pred EEEEeCCCCEEEEEcCCcEEEEeC
Q 010287 490 HLAWHPSENSIACAASNSLYMYYA 513 (513)
Q Consensus 490 ~~~~sp~~~~la~~~~~~~~i~~~ 513 (513)
+.+|||..+.+|++..+.++||++
T Consensus 410 h~aWhp~en~ia~aatnnlyif~~ 433 (433)
T KOG1354|consen 410 HTAWHPKENSIAVAATNNLYIFQD 433 (433)
T ss_pred hhccCCccceeeeeecCceEEecC
Confidence 999999999999999999999975
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-46 Score=312.55 Aligned_cols=301 Identities=16% Similarity=0.252 Sum_probs=255.3
Q ss_pred cccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcce
Q 010287 12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (513)
Q Consensus 12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (513)
.+.-.|+... +.....-.+|..+|.|++|+|||+.||+|+.||+|++||.++++.
T Consensus 137 ~TvR~WD~~T---eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~---------------------- 191 (480)
T KOG0271|consen 137 TTVRLWDLDT---ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ---------------------- 191 (480)
T ss_pred ceEEeeccCC---CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc----------------------
Confidence 3445577764 333345568999999999999999999999999999999888876
Q ss_pred EeccccCCCCcccccccccccccceeEEEee---cCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcc
Q 010287 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ---SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (513)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~---~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (513)
.-..|.+|. ..|++++|.| .+...+|++++.||.++|||+..+.+...
T Consensus 192 ~g~~l~gH~------------K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~----------------- 242 (480)
T KOG0271|consen 192 IGRALRGHK------------KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT----------------- 242 (480)
T ss_pred ccccccCcc------------cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE-----------------
Confidence 345689999 9999999987 45667999999999999999998876543
Q ss_pred cCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEE
Q 010287 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 248 (513)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 248 (513)
+.+|+.+|+|++|.-+| +|+
T Consensus 243 -----------------------------------------------------------lsgHT~~VTCvrwGG~g-liy 262 (480)
T KOG0271|consen 243 -----------------------------------------------------------LSGHTASVTCVRWGGEG-LIY 262 (480)
T ss_pred -----------------------------------------------------------eccCccceEEEEEcCCc-eEE
Confidence 46999999999998765 788
Q ss_pred EE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe-----------CCC-----------------------
Q 010287 249 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-----------PTH----------------------- 293 (513)
Q Consensus 249 s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~----------------------- 293 (513)
+| .|++|++|+...+..+. .+.+|...|+.++.+ |.+
T Consensus 263 SgS~DrtIkvw~a~dG~~~r--------~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~ 334 (480)
T KOG0271|consen 263 SGSQDRTIKVWRALDGKLCR--------ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKD 334 (480)
T ss_pred ecCCCceEEEEEccchhHHH--------hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhcc
Confidence 88 69999999998755442 678999999999887 222
Q ss_pred -CeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCC
Q 010287 294 -CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMD 371 (513)
Q Consensus 294 -~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~ 371 (513)
+..+++|+.|.++.+|+....... +. -+.+|..-|+.+.||||++++++++ |..|++||.++
T Consensus 335 ~~erlVSgsDd~tlflW~p~~~kkp---i~------------rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t- 398 (480)
T KOG0271|consen 335 SGERLVSGSDDFTLFLWNPFKSKKP---IT------------RMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT- 398 (480)
T ss_pred CcceeEEecCCceEEEecccccccc---hh------------hhhchhhheeeEEECCCccEEEEeecccceeeeeCCC-
Confidence 136999999999999997543321 11 1567778999999999999999999 59999999997
Q ss_pred CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCC
Q 010287 372 SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 451 (513)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 451 (513)
++.+.++++|-.. |+.++|+.|.++|++|+.|.++++|++++. ++...+.+|...|.++.|+||
T Consensus 399 Gk~lasfRGHv~~---------------VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~DLpGh~DEVf~vDwspD 462 (480)
T KOG0271|consen 399 GKFLASFRGHVAA---------------VYQVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQDLPGHADEVFAVDWSPD 462 (480)
T ss_pred cchhhhhhhccce---------------eEEEEeccCccEEEEcCCCceEEEEEeeee-eecccCCCCCceEEEEEecCC
Confidence 9999999999877 559999999999999999999999999976 666899999999999999999
Q ss_pred CCceeeecCCCeEEE
Q 010287 452 RPSRPLGSLSGVVRR 466 (513)
Q Consensus 452 ~~~l~~~~~d~~i~~ 466 (513)
|..+++|+.|..+++
T Consensus 463 G~rV~sggkdkv~~l 477 (480)
T KOG0271|consen 463 GQRVASGGKDKVLRL 477 (480)
T ss_pred CceeecCCCceEEEe
Confidence 999999999999998
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.4e-46 Score=318.88 Aligned_cols=283 Identities=20% Similarity=0.315 Sum_probs=252.1
Q ss_pred cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
.++.+.+|..+.||++++.||||+.+|.+++|+..+.. ....|.||+
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-----------------------~~~~l~gH~---------- 217 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-----------------------LLQTLRGHT---------- 217 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-----------------------eeEEEeccc----------
Confidence 45678999999999999999999999999999987654 347799999
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
+.|.++.|+|..++..+++++.||++++|++.+......
T Consensus 218 --~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~--------------------------------------- 256 (459)
T KOG0272|consen 218 --SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD--------------------------------------- 256 (459)
T ss_pred --cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhh---------------------------------------
Confidence 889999999965567899999999999999987542221
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 269 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~ 269 (513)
+.+|...|..++|+|+|++|.++ .|.+-++||++++....
T Consensus 257 -------------------------------------l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL-- 297 (459)
T KOG0272|consen 257 -------------------------------------LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL-- 297 (459)
T ss_pred -------------------------------------hhcchhhheeeeecCCCceeeecccccchhhcccccchhhH--
Confidence 36888899999999999999999 69999999999877654
Q ss_pred cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287 270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 349 (513)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 349 (513)
..++|...|.+++|+||| .++++|+.|..-+|||+|+++. +.. +.+|..+|.+|+|+
T Consensus 298 ------~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~----im~------------L~gH~k~I~~V~fs 354 (459)
T KOG0272|consen 298 ------LQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRC----IMF------------LAGHIKEILSVAFS 354 (459)
T ss_pred ------hhcccccccceeEecCCC-ceeeccCccchhheeecccCcE----EEE------------ecccccceeeEeEC
Confidence 458999999999999999 9999999999999999999986 333 45677899999999
Q ss_pred ecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC-CCCEEEEEeCCCcEEEEecC
Q 010287 350 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCS 427 (513)
Q Consensus 350 p~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~ 427 (513)
|+|..|++|+ |++++|||++. ...+.++.+|... |+.++|+| .|.+|+|++.|+++++|...
T Consensus 355 PNGy~lATgs~Dnt~kVWDLR~-r~~ly~ipAH~nl---------------VS~Vk~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 355 PNGYHLATGSSDNTCKVWDLRM-RSELYTIPAHSNL---------------VSQVKYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred CCceEEeecCCCCcEEEeeecc-cccceecccccch---------------hhheEecccCCeEEEEcccCcceeeecCC
Confidence 9999999987 59999999997 7889999999987 44899998 78899999999999999999
Q ss_pred CCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
+. .....+.+|.+.|.++.+++++.++++++.|+++++
T Consensus 419 ~~-~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 419 TW-SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKL 456 (459)
T ss_pred Cc-ccchhhcCCccceEEEEeccCCceEEEeccCceeee
Confidence 88 555899999999999999999999999999999998
No 5
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-44 Score=296.67 Aligned_cols=439 Identities=50% Similarity=0.769 Sum_probs=352.8
Q ss_pred ccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEec
Q 010287 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKT 94 (513)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (513)
-.|++.|+||++.........+.|+++.|...|.|||+|...|+|.+|..... .+.+|++..
T Consensus 6 ~~~kf~QCfgdk~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s------------------~~ceykf~t 67 (460)
T COG5170 6 EILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKS------------------YGCEYKFFT 67 (460)
T ss_pred hhhhhHhhhcchhhcccccccceeeEEEeccccceEeecCCCceEEEeecccc------------------cccchhhhh
Confidence 46999999999998888999999999999999999999999999999986432 346889999
Q ss_pred cccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccc
Q 010287 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (513)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (513)
+|++|++||+|+++++++..|+.|.|+.......++..+.|++|++|.+....++.+.+-+...+..
T Consensus 68 eFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~------------- 134 (460)
T COG5170 68 EFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFH------------- 134 (460)
T ss_pred hhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccc-------------
Confidence 9999999999999999999999999987555668888999999999999887665554433322111
Q ss_pred cCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCe
Q 010287 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLR 254 (513)
Q Consensus 175 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~ 254 (513)
+|.|..+ .....+++..+.....+....+.+.+...|...+.++.|+.|.+.+++++|=.
T Consensus 135 -----~~~~g~~---------------~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLr 194 (460)
T COG5170 135 -----SPMGGPL---------------TSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLR 194 (460)
T ss_pred -----cccCCCc---------------CCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeecccee
Confidence 1222111 13345566666666666667777788899999999999999999999999999
Q ss_pred EEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcc
Q 010287 255 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS 334 (513)
Q Consensus 255 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 334 (513)
|.+|+++.....+.+++++|..+......|++..|+|.....|...+..|.|++-|+|...++....+.++...++....
T Consensus 195 INLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ 274 (460)
T COG5170 195 INLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVD 274 (460)
T ss_pred eeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccch
Confidence 99999999999999999999999888999999999999888999999999999999999888887777787777777778
Q ss_pred ccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEE
Q 010287 335 FFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 414 (513)
Q Consensus 335 ~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 414 (513)
++.+....|..+.|+++|+++++.+.-+|+|||+++...++.++..|......+++.|+++++++-+.+.||.|.+.+++
T Consensus 275 ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~s 354 (460)
T COG5170 275 FFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLS 354 (460)
T ss_pred hHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccc
Confidence 88888899999999999999999998999999999988999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEecCCCCcc----ceeecCCCCc----------eeEEE-EcCCCCceeeecCCCeEEEecCCCCCccccCC
Q 010287 415 GSYSNLFRVFGCSEGSAE----STTLEASKNP----------MRRQV-QTPSRPSRPLGSLSGVVRRVKGADNSALDANG 479 (513)
Q Consensus 415 ~~~dg~i~vwd~~~~~~~----~~~~~~~~~~----------v~~~~-~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~ 479 (513)
|+..+..-+|-..+.... ...+..+..+ |...- .........+.+.+|.+.. .. -.
T Consensus 355 gsy~NNfgiyp~~ssg~~D~g~vv~~ad~~a~~~~~k~~~nnv~kkd~~kn~~~rs~ss~a~g~~~~--~e-------D~ 425 (460)
T COG5170 355 GSYSNNFGIYPTDSSGFKDVGHVVNLADGSAEDFKVKCETNNVEKKDKLKNNDWRSVSSSADGFVVA--CE-------DP 425 (460)
T ss_pred cccccceeeeccccCCCCcceEEEecccCCcccccCcccccccccccccccccccccccccCcceee--cc-------Cc
Confidence 999988888874432111 1111111111 11110 1111112333444444444 11 12
Q ss_pred ccccccCCeeEEEEeCCCCEEEEEcCCcEEEEeC
Q 010287 480 NAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 513 (513)
Q Consensus 480 ~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~~ 513 (513)
..+++...|.+.+|||-..-+|++..+.+++|++
T Consensus 426 d~ld~~k~ilh~sWhp~e~svaiaatnnlfvfs~ 459 (460)
T COG5170 426 DNLDLLKKILHRSWHPFEDSVAIAATNNLFVFSK 459 (460)
T ss_pred chhHHHHHHHhhccCCcccceeeeecCceEEEec
Confidence 3445577899999999999999999999999975
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.6e-41 Score=293.84 Aligned_cols=384 Identities=18% Similarity=0.269 Sum_probs=275.6
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCC-CCCCccCccccccccccCCCcceEe---------------
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTR-DNGGQRRDLEMMDYSMSRHPEFRYK--------------- 93 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 93 (513)
.+.+|..+++-..|||.|.|+|+|...|.||||+....+ .+....+.+.+...+..|..+.+-.
T Consensus 54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~ 133 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFL 133 (603)
T ss_pred eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEE
Confidence 466899999999999999999999999999999977633 2223334455555555555543211
Q ss_pred -------ccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCC
Q 010287 94 -------TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGP 166 (513)
Q Consensus 94 -------~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (513)
-++.||. ..|+++.|-|+.. -++++++.|++|.+|+=...+.+..
T Consensus 134 ~DSG~SvGei~GhS------------r~ins~~~KpsRP-fRi~T~sdDn~v~ffeGPPFKFk~s--------------- 185 (603)
T KOG0318|consen 134 WDSGNSVGEITGHS------------RRINSVDFKPSRP-FRIATGSDDNTVAFFEGPPFKFKSS--------------- 185 (603)
T ss_pred ecCCCccceeeccc------------eeEeeeeccCCCc-eEEEeccCCCeEEEeeCCCeeeeec---------------
Confidence 1133333 6677777766544 3566777777777665333222111
Q ss_pred cccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCE
Q 010287 167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 246 (513)
Q Consensus 167 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 246 (513)
...|..-|.|+.|+|||..
T Consensus 186 -------------------------------------------------------------~r~HskFV~~VRysPDG~~ 204 (603)
T KOG0318|consen 186 -------------------------------------------------------------FREHSKFVNCVRYSPDGSR 204 (603)
T ss_pred -------------------------------------------------------------ccccccceeeEEECCCCCe
Confidence 2567778999999999999
Q ss_pred EEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccc-----
Q 010287 247 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH----- 320 (513)
Q Consensus 247 l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----- 320 (513)
|++. .||+|.+||-.+++....+- .-..|.+.|..++|+||+ ..|++++.|.++++||+.+.++..+.
T Consensus 205 Fat~gsDgki~iyDGktge~vg~l~-----~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~ 278 (603)
T KOG0318|consen 205 FATAGSDGKIYIYDGKTGEKVGELE-----DSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVSTWPMGST 278 (603)
T ss_pred EEEecCCccEEEEcCCCccEEEEec-----CCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEEeecCCc
Confidence 9998 79999999999888776542 235899999999999999 99999999999999999887643110
Q ss_pred ----------------------ceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCC---
Q 010287 321 ----------------------SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGP--- 374 (513)
Q Consensus 321 ----------------------~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~--- 374 (513)
...+-...++.....+.+|...|+++..+|++.+|++|+. |.|.-|+... +..
T Consensus 279 v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~-g~~~~~ 357 (603)
T KOG0318|consen 279 VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGS-GTSDRL 357 (603)
T ss_pred hhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCC-cccccc
Confidence 0111122333355567899999999999999999999986 9999999865 211
Q ss_pred --------eeeeeccc-cc---------c---------------------c-ccc-----------------------cc
Q 010287 375 --------VATFQVHE-HL---------R---------------------P-KLC-----------------------DL 391 (513)
Q Consensus 375 --------~~~~~~~~-~~---------~---------------------~-~~~-----------------------~~ 391 (513)
+..+..++ .. . + .++ ..
T Consensus 358 ~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~ 437 (603)
T KOG0318|consen 358 AGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKV 437 (603)
T ss_pred ccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcc
Confidence 11111111 00 0 0 000 00
Q ss_pred cccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC-ccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCC
Q 010287 392 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS-AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA 470 (513)
Q Consensus 392 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~ 470 (513)
......+...+++++|++..++.|+.|+.|+||.+.... +....+..|..+++.++++|++.+||+|...+.+.+ +
T Consensus 438 ~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~---y 514 (603)
T KOG0318|consen 438 SSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVL---Y 514 (603)
T ss_pred eeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEE---E
Confidence 001112245678999999999999999999999998754 233577889999999999999999999999999999 2
Q ss_pred CCCccccCCcccc-ccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 471 DNSALDANGNAFD-FSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 471 ~~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
.....+.....+. |+.+|.+++|+|+..++|+|+ |..++||.
T Consensus 515 d~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 515 DVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred EcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence 2222222233333 899999999999999999999 77888886
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.8e-42 Score=295.25 Aligned_cols=278 Identities=17% Similarity=0.225 Sum_probs=241.8
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
.+|..+.| +.++..|++|+.+|.++||+..+......
T Consensus 176 rPis~~~f--S~ds~~laT~swsG~~kvW~~~~~~~~~~----------------------------------------- 212 (459)
T KOG0272|consen 176 RPISGCSF--SRDSKHLATGSWSGLVKVWSVPQCNLLQT----------------------------------------- 212 (459)
T ss_pred CcceeeEe--ecCCCeEEEeecCCceeEeecCCcceeEE-----------------------------------------
Confidence 78899999 45888999999999999999987643332
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC--CCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFNI 269 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~vwd~~~~~~~~~~ 269 (513)
+.+|...|.++.|+|. +..+++| .||++++|++.+...+.
T Consensus 213 -----------------------------------l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~-- 255 (459)
T KOG0272|consen 213 -----------------------------------LRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ-- 255 (459)
T ss_pred -----------------------------------EeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh--
Confidence 5799999999999996 6689998 69999999998654432
Q ss_pred cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287 270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 349 (513)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 349 (513)
.+.+|...|..++|+|+| ++|++++.|.+.++||++++.... ...||...|.+++|.
T Consensus 256 ------~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL----------------~QEGHs~~v~~iaf~ 312 (459)
T KOG0272|consen 256 ------DLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELL----------------LQEGHSKGVFSIAFQ 312 (459)
T ss_pred ------hhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhH----------------hhcccccccceeEec
Confidence 678999999999999999 999999999999999999987522 146788999999999
Q ss_pred ecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287 350 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 428 (513)
Q Consensus 350 p~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 428 (513)
|||.++++|+ |..-+|||+++ ++.+..+.+|... |.+++|+|+|..||||+.|++++|||++.
T Consensus 313 ~DGSL~~tGGlD~~~RvWDlRt-gr~im~L~gH~k~---------------I~~V~fsPNGy~lATgs~Dnt~kVWDLR~ 376 (459)
T KOG0272|consen 313 PDGSLAATGGLDSLGRVWDLRT-GRCIMFLAGHIKE---------------ILSVAFSPNGYHLATGSSDNTCKVWDLRM 376 (459)
T ss_pred CCCceeeccCccchhheeeccc-CcEEEEecccccc---------------eeeEeECCCceEEeecCCCCcEEEeeecc
Confidence 9999999987 58889999998 9999999998876 56999999999999999999999999997
Q ss_pred CCccceeecCCCCceeEEEEcC-CCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CC
Q 010287 429 GSAESTTLEASKNPMRRQVQTP-SRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SN 506 (513)
Q Consensus 429 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~ 506 (513)
. ....++.+|.+-|..+.|+| .|.+|++++.|+.+++ |...........-+|.+.|.++..+||+.++++++ |.
T Consensus 377 r-~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~ki---Ws~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DR 452 (459)
T KOG0272|consen 377 R-SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKI---WSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDR 452 (459)
T ss_pred c-ccceecccccchhhheEecccCCeEEEEcccCcceee---ecCCCcccchhhcCCccceEEEEeccCCceEEEeccCc
Confidence 6 44689999999999999998 7889999999999999 44333334456668999999999999999999888 88
Q ss_pred cEEEEeC
Q 010287 507 SLYMYYA 513 (513)
Q Consensus 507 ~~~i~~~ 513 (513)
++++|.+
T Consensus 453 T~KLW~~ 459 (459)
T KOG0272|consen 453 TIKLWRP 459 (459)
T ss_pred eeeeccC
Confidence 9999974
No 8
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.8e-40 Score=297.37 Aligned_cols=415 Identities=14% Similarity=0.170 Sum_probs=306.3
Q ss_pred ccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEec
Q 010287 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKT 94 (513)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (513)
..|.+.. |.....-...|+.||.-++|+|.|.++|+|+.||.++|||+..+. ...
T Consensus 87 rv~~L~t--gk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~-----------------------~th 141 (775)
T KOG0319|consen 87 RVWSLPT--GKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY-----------------------CTH 141 (775)
T ss_pred EEEEccc--chHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE-----------------------EEE
Confidence 3455554 222222345699999999999999999999999999999998765 346
Q ss_pred cccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCcee-eeeeccccCCCcccCCCCcccCccc
Q 010287 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHVS 173 (513)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (513)
.|.||. +.|.++.|+|..+-..|+++..|+++++||+..... ......+...
T Consensus 142 ~fkG~g------------GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~--------------- 194 (775)
T KOG0319|consen 142 SFKGHG------------GVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSA--------------- 194 (775)
T ss_pred EecCCC------------ceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhh---------------
Confidence 789999 999999999977777889999999999999985533 3222222211
Q ss_pred ccCceeccCCCccccc-----------------------------c-----CCCCCCCCcCCCCCCceeceeeccCCcc-
Q 010287 174 AIPKSYMANGGCGERN-----------------------------F-----GCASNDSSFPPGGVSSLRLPVVTSQETN- 218 (513)
Q Consensus 174 ~~~~~~~~~g~~~~~~-----------------------------~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~- 218 (513)
.+++++++|+..+... . ......+.++.++.+.++.|+.......
T Consensus 195 vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~ 274 (775)
T KOG0319|consen 195 VTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVY 274 (775)
T ss_pred eeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhh
Confidence 1233333332211100 0 0000235566667777777766432110
Q ss_pred -----------------------------------------------------------------------------ccc
Q 010287 219 -----------------------------------------------------------------------------LVA 221 (513)
Q Consensus 219 -----------------------------------------------------------------------------~~~ 221 (513)
...
T Consensus 275 ~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~ 354 (775)
T KOG0319|consen 275 KQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLP 354 (775)
T ss_pred hhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecC
Confidence 000
Q ss_pred ceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEE
Q 010287 222 GCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS 300 (513)
Q Consensus 222 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 300 (513)
......+.+|...|.++....+|-+|++| .|.++++|.++.+......+ ....+|...|.+++++..+..+|+++
T Consensus 355 ~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~----a~~~gH~~svgava~~~~~asffvsv 430 (775)
T KOG0319|consen 355 TSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCV----AQANGHTNSVGAVAGSKLGASFFVSV 430 (775)
T ss_pred CCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhh----hhhcccccccceeeecccCccEEEEe
Confidence 00011346888889999876778899998 69999999985332221111 24578999999999999888999999
Q ss_pred eCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeee
Q 010287 301 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQ 379 (513)
Q Consensus 301 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~ 379 (513)
|.|.++++|++...+.... ...+. .......|...|++++++|+.+++++|+. .+.+||++.. .....++.
T Consensus 431 S~D~tlK~W~l~~s~~~~~-~~~~~------~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-~~l~~vLs 502 (775)
T KOG0319|consen 431 SQDCTLKLWDLPKSKETAF-PIVLT------CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-LRLLGVLS 502 (775)
T ss_pred cCCceEEEecCCCcccccc-cceeh------hhHHHHhhcccccceEecCCCceEEecccccceeeecccC-ceEEEEee
Confidence 9999999999976332111 11111 11123568889999999999999999985 9999999994 88999999
Q ss_pred cccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeec
Q 010287 380 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS 459 (513)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 459 (513)
+|... |+++.|+|..+.|+|+|.|++|+||.+++..+. .++++|...|....|-.+++.|++++
T Consensus 503 GH~RG---------------vw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl-kT~eGH~~aVlra~F~~~~~qliS~~ 566 (775)
T KOG0319|consen 503 GHTRG---------------VWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL-KTFEGHTSAVLRASFIRNGKQLISAG 566 (775)
T ss_pred CCccc---------------eEEEEeccccceeEeccCCceEEEEEeccceee-eeecCccceeEeeeeeeCCcEEEecc
Confidence 99876 679999999999999999999999999998554 89999999999999999999999999
Q ss_pred CCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287 460 LSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 460 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 512 (513)
.||.+++ |.....+-....-.|..+|.+++-+|...++++|+.|+.++++
T Consensus 567 adGliKl---Wnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 567 ADGLIKL---WNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred CCCcEEE---EeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEe
Confidence 9999999 6555434444555799999999999999999988866666553
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.4e-39 Score=262.45 Aligned_cols=291 Identities=14% Similarity=0.218 Sum_probs=239.8
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
...+|...|.++.|++|.++|++++.||.+.|||.-+..++ ..+.-..
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-----------------------haipl~s--------- 97 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-----------------------HAIPLPS--------- 97 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-----------------------eEEecCc---------
Confidence 56799999999999999999999999999999997655432 1111111
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
..|...+|+| .++++++|+.|+...||++.+.+...
T Consensus 98 ---~WVMtCA~sP--Sg~~VAcGGLdN~Csiy~ls~~d~~g--------------------------------------- 133 (343)
T KOG0286|consen 98 ---SWVMTCAYSP--SGNFVACGGLDNKCSIYPLSTRDAEG--------------------------------------- 133 (343)
T ss_pred ---eeEEEEEECC--CCCeEEecCcCceeEEEecccccccc---------------------------------------
Confidence 7899999976 56699999999999999998542111
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNI 269 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~ 269 (513)
.+ .....+.+|.+.+.|+.|-+|+++|.++.|.++.+||++++++..
T Consensus 134 ----------------~~---------------~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~-- 180 (343)
T KOG0286|consen 134 ----------------NV---------------RVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQ-- 180 (343)
T ss_pred ----------------cc---------------eeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEE--
Confidence 00 111125799999999999997665554589999999999887654
Q ss_pred cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287 270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 349 (513)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 349 (513)
.+.+|.+.|.++.++|..++.|++|+-|+..++||+|.+.. ..+ |.+|...|++++|.
T Consensus 181 ------~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c----~qt------------F~ghesDINsv~ff 238 (343)
T KOG0286|consen 181 ------VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC----VQT------------FEGHESDINSVRFF 238 (343)
T ss_pred ------EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce----eEe------------ecccccccceEEEc
Confidence 56899999999999994449999999999999999999876 344 44555889999999
Q ss_pred ecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287 350 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 428 (513)
Q Consensus 350 p~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 428 (513)
|+|.-+++|+| ++.++||++. .+.+..+... ..+.+|++++||..|++|++|..|..+.+||.-.
T Consensus 239 P~G~afatGSDD~tcRlyDlRa-D~~~a~ys~~-------------~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk 304 (343)
T KOG0286|consen 239 PSGDAFATGSDDATCRLYDLRA-DQELAVYSHD-------------SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK 304 (343)
T ss_pred cCCCeeeecCCCceeEEEeecC-CcEEeeeccC-------------cccCCceeEEEcccccEEEeeecCCceeEeeccc
Confidence 99999999997 9999999996 6666666522 2344578999999999999999999999999886
Q ss_pred CCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 429 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 429 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
+ +....+.+|.+.|.++..+|||--+++|++|..+||
T Consensus 305 ~-e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lri 341 (343)
T KOG0286|consen 305 G-ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRI 341 (343)
T ss_pred c-ceEEEeeccCCeeEEEEECCCCcEEEecchhHheee
Confidence 6 556889999999999999999999999999999998
No 10
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.2e-38 Score=287.25 Aligned_cols=398 Identities=16% Similarity=0.196 Sum_probs=290.8
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
.+.+|-+.|+++.|+.|.++|++|++|-.++||.+...+.. ....+.+|.
T Consensus 140 ~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~---------------------~~~~l~gHk--------- 189 (893)
T KOG0291|consen 140 TYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL---------------------FTYALNGHK--------- 189 (893)
T ss_pred eecCCccceeEEEeccCCceEEeccccceEEEEEecccccc---------------------ceEeccCCC---------
Confidence 46789999999999999999999999999999998766532 345688999
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeec---cccCC-CcccCCCCcccCcccc--c-CceeccC
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFD---WNVHP-EKAAGNGPIFGSHVSA--I-PKSYMAN 182 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~--~-~~~~~~~ 182 (513)
+.|.+.-| ..+...+++.+.||.+.+|............ ..... ......+.-......+ . ...+...
T Consensus 190 ---d~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~ 264 (893)
T KOG0291|consen 190 ---DYVVACFF--GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQN 264 (893)
T ss_pred ---cceEEEEe--ccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeeccc
Confidence 88999889 5566789999999999999876321000000 00000 0000000000000000 0 0000001
Q ss_pred CCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-c-CCeEEEEEc
Q 010287 183 GGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNL 260 (513)
Q Consensus 183 g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~-d~~i~vwd~ 260 (513)
+.-+.....+....+.+++-..|.+.++.+.....+.. +.-...+|..++|+..|.+|+.| . =|.+.||+.
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~-------LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweW 337 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHS-------LSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEW 337 (893)
T ss_pred ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEE-------eecccceeeEEEecccCCEEEEcCCccceEEEEEe
Confidence 10000001112223445666777777877765443221 12234568999999999999998 3 679999999
Q ss_pred CCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccccccc
Q 010287 261 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 340 (513)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (513)
....-.+ +.++|...+++++++||| +++++|+.||.|+|||..++.+ +.+ +.+|.
T Consensus 338 qsEsYVl--------KQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC----~vT------------FteHt 392 (893)
T KOG0291|consen 338 QSESYVL--------KQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFC----FVT------------FTEHT 392 (893)
T ss_pred eccceee--------eccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceE----EEE------------eccCC
Confidence 8654433 568999999999999999 9999999999999999998876 344 45566
Q ss_pred ccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC
Q 010287 341 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 419 (513)
Q Consensus 341 ~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 419 (513)
+.|+.+.|+..|+.+++.+ ||+|+.||+.. .+..+++..+.... ..+++..|.|..+++|+.|.
T Consensus 393 s~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-YrNfRTft~P~p~Q--------------fscvavD~sGelV~AG~~d~ 457 (893)
T KOG0291|consen 393 SGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-YRNFRTFTSPEPIQ--------------FSCVAVDPSGELVCAGAQDS 457 (893)
T ss_pred CceEEEEEEecCCEEEEeecCCeEEeeeecc-cceeeeecCCCcee--------------eeEEEEcCCCCEEEeeccce
Confidence 8999999999999999987 69999999996 88888888776532 23788899999999999775
Q ss_pred -cEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCC
Q 010287 420 -LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN 498 (513)
Q Consensus 420 -~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~ 498 (513)
.|.+|++++| +++..+.+|.+||.++.|+|.+..|+++|+|.+||+ |...........+++...++.++|+|||+
T Consensus 458 F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRi---W~if~s~~~vEtl~i~sdvl~vsfrPdG~ 533 (893)
T KOG0291|consen 458 FEIFVWSVQTG-QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRI---WDIFSSSGTVETLEIRSDVLAVSFRPDGK 533 (893)
T ss_pred EEEEEEEeecC-eeeehhcCCCCcceeeEEccccCeEEeccccceEEE---EEeeccCceeeeEeeccceeEEEEcCCCC
Confidence 6999999999 677899999999999999999999999999999999 55543223445566789999999999999
Q ss_pred EEEEEc-CCcEEEEeC
Q 010287 499 SIACAA-SNSLYMYYA 513 (513)
Q Consensus 499 ~la~~~-~~~~~i~~~ 513 (513)
.||+++ ++.+-+|++
T Consensus 534 elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 534 ELAVATLDGQITFFDI 549 (893)
T ss_pred eEEEEEecceEEEEEh
Confidence 999998 557777763
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-37 Score=247.76 Aligned_cols=292 Identities=15% Similarity=0.187 Sum_probs=228.4
Q ss_pred CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeecCCC
Q 010287 47 GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126 (513)
Q Consensus 47 g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~ 126 (513)
.-+||++++|.+||+|...++.. ..+++-.+ +.|+.+... +++
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C-----------------------~rTiqh~d------------sqVNrLeiT--pdk 52 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGIC-----------------------SRTIQHPD------------SQVNRLEIT--PDK 52 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeE-----------------------EEEEecCc------------cceeeEEEc--CCc
Confidence 35899999999999999988774 23333333 779999994 477
Q ss_pred ceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCc
Q 010287 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (513)
Q Consensus 127 ~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 206 (513)
..|++++. -.||+||++++....+.
T Consensus 53 ~~LAaa~~-qhvRlyD~~S~np~Pv~------------------------------------------------------ 77 (311)
T KOG0315|consen 53 KDLAAAGN-QHVRLYDLNSNNPNPVA------------------------------------------------------ 77 (311)
T ss_pred chhhhccC-CeeEEEEccCCCCCcee------------------------------------------------------
Confidence 67777665 55999999987532211
Q ss_pred eeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeE
Q 010287 207 LRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT 285 (513)
Q Consensus 207 i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 285 (513)
+ +.+|...|.++.|..+|+.+++| +||+++|||++..... ....|..+|+
T Consensus 78 -------------------t-~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q---------R~~~~~spVn 128 (311)
T KOG0315|consen 78 -------------------T-FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ---------RNYQHNSPVN 128 (311)
T ss_pred -------------------E-EeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc---------hhccCCCCcc
Confidence 1 36888889999999999999999 7999999999963321 3345779999
Q ss_pred EEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEE
Q 010287 286 SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLK 364 (513)
Q Consensus 286 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~ 364 (513)
++..+|+. ..|++|..+|.|++||+........ +- .+-..+|.++...|||.+++++.. |+.+
T Consensus 129 ~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~----li-----------Pe~~~~i~sl~v~~dgsml~a~nnkG~cy 192 (311)
T KOG0315|consen 129 TVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHE----LI-----------PEDDTSIQSLTVMPDGSMLAAANNKGNCY 192 (311)
T ss_pred eEEecCCc-ceEEeecCCCcEEEEEccCCccccc----cC-----------CCCCcceeeEEEcCCCcEEEEecCCccEE
Confidence 99999998 8899999999999999987654221 11 111257999999999999999987 9999
Q ss_pred EEEccCC-----CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCC
Q 010287 365 LWDINMD-----SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS 439 (513)
Q Consensus 365 iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 439 (513)
+|++-.. -+++..++.|... ++.+.+|||+++|++++.|.+++||+.++.-+....+++|
T Consensus 193 vW~l~~~~~~s~l~P~~k~~ah~~~---------------il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh 257 (311)
T KOG0315|consen 193 VWRLLNHQTASELEPVHKFQAHNGH---------------ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH 257 (311)
T ss_pred EEEccCCCccccceEhhheecccce---------------EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC
Confidence 9998641 2345566677665 5689999999999999999999999999774455888999
Q ss_pred CCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEE
Q 010287 440 KNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW 493 (513)
Q Consensus 440 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 493 (513)
...+..++||.++.||++|+.|+.+++ |.+...+...+.-+|-....+++.
T Consensus 258 ~rWvWdc~FS~dg~YlvTassd~~~rl---W~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 258 QRWVWDCAFSADGEYLVTASSDHTARL---WDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred CceEEeeeeccCccEEEecCCCCceee---cccccCceeeecCCcccccEEEEe
Confidence 999999999999999999999999999 665533333344455555555554
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.7e-37 Score=268.01 Aligned_cols=387 Identities=13% Similarity=0.183 Sum_probs=287.3
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEecccc---CCCCccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ---SHEPEFDYL 106 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~~~~~ 106 (513)
....|+.-|.|+.|+|||.++|+.+.||+|.|||=.+++.+ .++. +|.
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v-----------------------g~l~~~~aHk------ 235 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV-----------------------GELEDSDAHK------ 235 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE-----------------------EEecCCCCcc------
Confidence 34578999999999999999999999999999998777753 3333 777
Q ss_pred ccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (513)
Q Consensus 107 ~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 186 (513)
+.|+++.|+| |+..+++++.|++++|||+.+.++.....+...-+ -
T Consensus 236 ------GsIfalsWsP--Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~--------------------------d 281 (603)
T KOG0318|consen 236 ------GSIFALSWSP--DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE--------------------------D 281 (603)
T ss_pred ------ccEEEEEECC--CCceEEEecCCceEEEEEeeccceEEEeecCCchh--------------------------c
Confidence 8999999965 88899999999999999999998776654432100 0
Q ss_pred ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcc
Q 010287 187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 265 (513)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~ 265 (513)
+.+..-|.++..++.+-+|.|.+++....+.. ....+|...|+++..++++++|++| .||.|.-|+..++..
T Consensus 282 qqvG~lWqkd~lItVSl~G~in~ln~~d~~~~-------~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 282 QQVGCLWQKDHLITVSLSGTINYLNPSDPSVL-------KVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred eEEEEEEeCCeEEEEEcCcEEEEecccCCChh-------heecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc
Confidence 00011134555577788888888877665521 1247999999999999999999999 699999999987654
Q ss_pred eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccc-------eeeccccCC--------
Q 010287 266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS-------KLFEEQEAP-------- 330 (513)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------~~~~~~~~~-------- 330 (513)
..- .-+.|...|.+++-+..+ .+++++.|.++++.++..+....... +.+....+.
T Consensus 355 ~~~-------~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~ 425 (603)
T KOG0318|consen 355 DRL-------AGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACI 425 (603)
T ss_pred ccc-------ccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEec
Confidence 310 126799999999988764 57889999999999875432211100 000000000
Q ss_pred CCccccc--------cccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCee--eeecccccccccccccccCCccc
Q 010287 331 GTRSFFT--------EIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVA--TFQVHEHLRPKLCDLYENDSIFD 399 (513)
Q Consensus 331 ~~~~~~~--------~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 399 (513)
....++. ...-...+++++|++..++.|.. +.|+||.+.- ..... ....|...
T Consensus 426 ~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g-~~l~ee~~~~~h~a~--------------- 489 (603)
T KOG0318|consen 426 SDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG-DELKEEAKLLEHRAA--------------- 489 (603)
T ss_pred CcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecC-CcccceeeeecccCC---------------
Confidence 0000011 12235678999999999999775 9999999984 33222 33344443
Q ss_pred eeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCC
Q 010287 400 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANG 479 (513)
Q Consensus 400 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~ 479 (513)
++.+++|||+.||++|...+.+.+||..+..........|...|.+++|+|+.+.+|+|+.|-.|.+....++... ..
T Consensus 490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~--i~ 567 (603)
T KOG0318|consen 490 ITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH--II 567 (603)
T ss_pred ceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh--eE
Confidence 5699999999999999999999999999886655666779999999999999999999999999999555555531 11
Q ss_pred ccccccCCeeEEEEeCCCCEEEEEcCCcEEEEeC
Q 010287 480 NAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 513 (513)
Q Consensus 480 ~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~~ 513 (513)
-.-.|...|+.++|-.+...+-+|.|-.+++|+.
T Consensus 568 iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 568 IKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred eccccccCceeEEEecCceEEeccCcceeEEecc
Confidence 2224777799999999888888888999999973
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.2e-37 Score=247.40 Aligned_cols=288 Identities=15% Similarity=0.240 Sum_probs=229.4
Q ss_pred cccccccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccc
Q 010287 29 GEEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (513)
Q Consensus 29 ~~~~~h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (513)
....+|++.|+.++..+. .+.+++++.|..+.+|++..... .-....+.|.||.
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~------------------~~G~~~r~~~GHs------- 63 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI------------------KYGVPVRRLTGHS------- 63 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc------------------ccCceeeeeeccc-------
Confidence 356789999999999987 57899999999999999876532 1123456788888
Q ss_pred cccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (513)
Q Consensus 108 ~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 187 (513)
..|..+.. +.++++.++++.|+++++||+.+++..+.
T Consensus 64 -----H~v~dv~~--s~dg~~alS~swD~~lrlWDl~~g~~t~~------------------------------------ 100 (315)
T KOG0279|consen 64 -----HFVSDVVL--SSDGNFALSASWDGTLRLWDLATGESTRR------------------------------------ 100 (315)
T ss_pred -----eEecceEE--ccCCceEEeccccceEEEEEecCCcEEEE------------------------------------
Confidence 77999999 45888999999999999999999854332
Q ss_pred cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcce
Q 010287 188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 266 (513)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~ 266 (513)
+.+|...|.+++|++|.+.+++| .|.+|++|+... ...
T Consensus 101 ----------------------------------------f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck 139 (315)
T KOG0279|consen 101 ----------------------------------------FVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCK 139 (315)
T ss_pred ----------------------------------------EEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEE
Confidence 46899999999999999999999 699999999974 334
Q ss_pred eeecccCccccccccCCeEEEEEeCCC-CeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287 267 FNIVDVKPANMEDLTEVITSAEFHPTH-CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 345 (513)
Q Consensus 267 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 345 (513)
+++ .-..+.+.|.|+.|+|+. ...|++++.|++|++||+++-+... .+.+|.+.++.
T Consensus 140 ~t~------~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~----------------~~~gh~~~v~t 197 (315)
T KOG0279|consen 140 YTI------HEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT----------------TFIGHSGYVNT 197 (315)
T ss_pred EEE------ecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh----------------ccccccccEEE
Confidence 432 112347899999999983 3789999999999999999866521 15667789999
Q ss_pred EEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEE
Q 010287 346 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 424 (513)
Q Consensus 346 i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 424 (513)
+.+||||.++++|.. |.+.+||++. ++.+..+..... |.+++|+|+.-+|+.+.. ..|+||
T Consensus 198 ~~vSpDGslcasGgkdg~~~LwdL~~-~k~lysl~a~~~----------------v~sl~fspnrywL~~at~-~sIkIw 259 (315)
T KOG0279|consen 198 VTVSPDGSLCASGGKDGEAMLWDLNE-GKNLYSLEAFDI----------------VNSLCFSPNRYWLCAATA-TSIKIW 259 (315)
T ss_pred EEECCCCCEEecCCCCceEEEEEccC-CceeEeccCCCe----------------EeeEEecCCceeEeeccC-CceEEE
Confidence 999999999999875 9999999996 777766654332 459999999877776654 569999
Q ss_pred ecCCCCccceeec----CC-----CCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 425 GCSEGSAESTTLE----AS-----KNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 425 d~~~~~~~~~~~~----~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
|+.++..+ ..++ +. .-....++|+++|..|..|-.|+.|++
T Consensus 260 dl~~~~~v-~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv 309 (315)
T KOG0279|consen 260 DLESKAVV-EELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRV 309 (315)
T ss_pred eccchhhh-hhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEE
Confidence 99987433 2222 11 122347899999999999999999998
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.1e-37 Score=249.00 Aligned_cols=291 Identities=15% Similarity=0.190 Sum_probs=242.6
Q ss_pred EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (513)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (513)
..+.|+||. .+|.++.|+ .|.+++++++.||.+.|||.-+........+
T Consensus 47 ~rr~LkGH~------------~Ki~~~~ws--~Dsr~ivSaSqDGklIvWDs~TtnK~haipl----------------- 95 (343)
T KOG0286|consen 47 TRRTLKGHL------------NKIYAMDWS--TDSRRIVSASQDGKLIVWDSFTTNKVHAIPL----------------- 95 (343)
T ss_pred eEEEecccc------------cceeeeEec--CCcCeEEeeccCCeEEEEEcccccceeEEec-----------------
Confidence 346689999 899999995 4888999999999999999877653333221
Q ss_pred ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-
Q 010287 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 250 (513)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~- 250 (513)
....|..++|+|.++++++|
T Consensus 96 -----------------------------------------------------------~s~WVMtCA~sPSg~~VAcGG 116 (343)
T KOG0286|consen 96 -----------------------------------------------------------PSSWVMTCAYSPSGNFVACGG 116 (343)
T ss_pred -----------------------------------------------------------CceeEEEEEECCCCCeEEecC
Confidence 12458899999999999998
Q ss_pred cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCC
Q 010287 251 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 330 (513)
Q Consensus 251 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 330 (513)
-|+...||++.+.+..... ...+.+.+|.+.+.|+.|.+| ..|++++.|.+..+||+++++. +..
T Consensus 117 LdN~Csiy~ls~~d~~g~~--~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~----~~~------- 181 (343)
T KOG0286|consen 117 LDNKCSIYPLSTRDAEGNV--RVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQ----TQV------- 181 (343)
T ss_pred cCceeEEEecccccccccc--eeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceE----EEE-------
Confidence 5999999999855221110 011367899999999999996 5899999999999999999886 333
Q ss_pred CCccccccccccEEEEEEee-cCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC
Q 010287 331 GTRSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 408 (513)
Q Consensus 331 ~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 408 (513)
+.+|.+.|.+++++| +++.+++|+ |+..++||++. +...++|.+|+.- |.+++|.|+
T Consensus 182 -----f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-~~c~qtF~ghesD---------------INsv~ffP~ 240 (343)
T KOG0286|consen 182 -----FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-GQCVQTFEGHESD---------------INSVRFFPS 240 (343)
T ss_pred -----ecCCcccEEEEecCCCCCCeEEecccccceeeeeccC-cceeEeecccccc---------------cceEEEccC
Confidence 566779999999999 999999976 69999999997 8999999999976 459999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCCccceeec--CCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccC
Q 010287 409 GGRVATGSYSNLFRVFGCSEGSAESTTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSM 486 (513)
Q Consensus 409 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~ 486 (513)
|.-+++|++|++.++||++...++ ..+. ....+|++++|+..|++|..|..|..+.+ |+..+.+..+.+.+|..
T Consensus 241 G~afatGSDD~tcRlyDlRaD~~~-a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~v---WDtlk~e~vg~L~GHeN 316 (343)
T KOG0286|consen 241 GDAFATGSDDATCRLYDLRADQEL-AVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNV---WDTLKGERVGVLAGHEN 316 (343)
T ss_pred CCeeeecCCCceeEEEeecCCcEE-eeeccCcccCCceeEEEcccccEEEeeecCCceeE---eeccccceEEEeeccCC
Confidence 999999999999999999987433 4443 34578999999999999999999999999 76666667777888999
Q ss_pred CeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 487 KLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 487 ~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
+|+++..+|||..+++|+ +..++||.
T Consensus 317 RvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 317 RVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999 88888884
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.8e-38 Score=269.61 Aligned_cols=278 Identities=19% Similarity=0.314 Sum_probs=237.8
Q ss_pred cccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccc
Q 010287 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (513)
Q Consensus 35 ~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (513)
.-+|..|.|.|+|+.|++|+..|.+.+|+... +.+...+++|+ .+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-----------------------fnFEtilQaHD------------s~ 140 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-----------------------FNFETILQAHD------------SP 140 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce-----------------------eeHHHHhhhhc------------cc
Confidence 34899999999999999999999999999532 22446678999 99
Q ss_pred ceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCC
Q 010287 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (513)
Q Consensus 115 i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (513)
|.++.|+ .++..+++|..+|.|++|+..-...+.+
T Consensus 141 Vr~m~ws--~~g~wmiSgD~gG~iKyWqpnmnnVk~~------------------------------------------- 175 (464)
T KOG0284|consen 141 VRTMKWS--HNGTWMISGDKGGMIKYWQPNMNNVKII------------------------------------------- 175 (464)
T ss_pred ceeEEEc--cCCCEEEEcCCCceEEecccchhhhHHh-------------------------------------------
Confidence 9999994 5788999999999999999865432211
Q ss_pred CCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccC
Q 010287 195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 273 (513)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~ 273 (513)
-..|...|++++|+|+...|+++ +||+|+|||....+...
T Consensus 176 ---------------------------------~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~------ 216 (464)
T KOG0284|consen 176 ---------------------------------QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER------ 216 (464)
T ss_pred ---------------------------------hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh------
Confidence 12455789999999999999998 79999999998665442
Q ss_pred ccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC
Q 010287 274 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 353 (513)
Q Consensus 274 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~ 353 (513)
.+.+|.-.|.+++|+|.. .++++++.|..|++||.+++..... +.+|+..|..+.|+|++.
T Consensus 217 --vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~t----------------lh~HKntVl~~~f~~n~N 277 (464)
T KOG0284|consen 217 --VLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLAT----------------LHGHKNTVLAVKFNPNGN 277 (464)
T ss_pred --eeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhh----------------hhhccceEEEEEEcCCCC
Confidence 568999999999999998 8999999999999999999987432 566778999999999999
Q ss_pred EEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC-CEEEEEeCCCcEEEEecCCCCc
Q 010287 354 HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSA 431 (513)
Q Consensus 354 ~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~ 431 (513)
+|++++. ..+++||+++ .+.+..+++|... ++++.|+|-. .+|.+|+.||.|..|.+...+.
T Consensus 278 ~Llt~skD~~~kv~DiR~-mkEl~~~r~Hkkd---------------v~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p 341 (464)
T KOG0284|consen 278 WLLTGSKDQSCKVFDIRT-MKELFTYRGHKKD---------------VTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP 341 (464)
T ss_pred eeEEccCCceEEEEehhH-hHHHHHhhcchhh---------------heeeccccccccceeeccCCCceEEEecccccc
Confidence 9999885 9999999996 8889999999876 5589999955 5777999999999999885545
Q ss_pred cceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 432 ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 432 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
+...-.+|...|.+++++|-|..|++|+.|+.+++
T Consensus 342 ~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rf 376 (464)
T KOG0284|consen 342 LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRF 376 (464)
T ss_pred ccCCCcccccceeeeeccccceeEeecCCCcceee
Confidence 54556689999999999999999999999999999
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-35 Score=271.00 Aligned_cols=395 Identities=15% Similarity=0.216 Sum_probs=290.1
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCC-CccCcccc---------ccccccCCCcceEecc-ccC
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNG-GQRRDLEM---------MDYSMSRHPEFRYKTE-FQS 98 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~ 98 (513)
...+|++.|-+.-|..+..-+.|-+.||.+.+|......... ..+..-++ .....++..-++..+. +..
T Consensus 184 ~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~ 263 (893)
T KOG0291|consen 184 ALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQ 263 (893)
T ss_pred eccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecc
Confidence 356899999999999999999999999999999976332110 00000000 0000000000000000 111
Q ss_pred CCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCce
Q 010287 99 HEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178 (513)
Q Consensus 99 h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (513)
. +..|++.+|++ ....|+++-..|...+|.+....+++...+...+ ...++
T Consensus 264 ~------------~~kvtaa~fH~--~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~---------------I~t~~ 314 (893)
T KOG0291|consen 264 N------------SSKVTAAAFHK--GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQK---------------ILTVS 314 (893)
T ss_pred c------------ccceeeeeccC--CceEEEEEecCCeeEEEecCCceEEEEeecccce---------------eeEEE
Confidence 1 16799999977 4458999999999999999988777665544222 12445
Q ss_pred eccCCCccccccCCCCCCCCcCC-CCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEE
Q 010287 179 YMANGGCGERNFGCASNDSSFPP-GGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRIN 256 (513)
Q Consensus 179 ~~~~g~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~ 256 (513)
++..|.++ +.+ ..-|.+-+|+-.....+.. ..+|...+.+++++|||+++++| +||.|+
T Consensus 315 ~N~tGDWi------------A~g~~klgQLlVweWqsEsYVlK-------QQgH~~~i~~l~YSpDgq~iaTG~eDgKVK 375 (893)
T KOG0291|consen 315 FNSTGDWI------------AFGCSKLGQLLVWEWQSESYVLK-------QQGHSDRITSLAYSPDGQLIATGAEDGKVK 375 (893)
T ss_pred ecccCCEE------------EEcCCccceEEEEEeeccceeee-------ccccccceeeEEECCCCcEEEeccCCCcEE
Confidence 55666654 333 3457899998755433222 26899999999999999999999 899999
Q ss_pred EEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccc
Q 010287 257 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF 336 (513)
Q Consensus 257 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (513)
+||...+-... ++..|+..|+.++|+..+ +.+++++.||+|+.||+...+. .++|..++.
T Consensus 376 vWn~~SgfC~v--------TFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrN----fRTft~P~p------- 435 (893)
T KOG0291|consen 376 VWNTQSGFCFV--------TFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRN----FRTFTSPEP------- 435 (893)
T ss_pred EEeccCceEEE--------EeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccce----eeeecCCCc-------
Confidence 99998665443 678899999999999999 9999999999999999987665 666666543
Q ss_pred ccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEE
Q 010287 337 TEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 414 (513)
Q Consensus 337 ~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 414 (513)
....|++..|.|.++++|+ | -.|.+|++++ ++.+..+.+|++++ .+++|+|++..|++
T Consensus 436 ----~QfscvavD~sGelV~AG~~d~F~IfvWS~qT-GqllDiLsGHEgPV---------------s~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 436 ----IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT-GQLLDILSGHEGPV---------------SGLSFSPDGSLLAS 495 (893)
T ss_pred ----eeeeEEEEcCCCCEEEeeccceEEEEEEEeec-CeeeehhcCCCCcc---------------eeeEEccccCeEEe
Confidence 3578899999999999987 4 8899999998 99999999999984 48999999999999
Q ss_pred EeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE-----------ecCC------CCCcccc
Q 010287 415 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR-----------VKGA------DNSALDA 477 (513)
Q Consensus 415 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~-----------~~~~------~~~~~~~ 477 (513)
++.|.+|++||+-.......++ .+...+..+.|+|+|+-||++..||.|.+ +++. +.....+
T Consensus 496 ~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ 574 (893)
T KOG0291|consen 496 GSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRI 574 (893)
T ss_pred ccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccccccee
Confidence 9999999999997653333333 34567889999999999999999999998 1111 1111112
Q ss_pred CCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEeC
Q 010287 478 NGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYYA 513 (513)
Q Consensus 478 ~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~~ 513 (513)
....-......+.+.+|+||.+|.+|+ .+.++||.+
T Consensus 575 ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 575 TAENSAKGKTFTTICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred ehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence 222223356799999999999988766 889999874
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.3e-36 Score=261.50 Aligned_cols=333 Identities=18% Similarity=0.302 Sum_probs=256.0
Q ss_pred ccccccEEEEEEcCCCC-EEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 32 VQEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 32 ~~h~~~V~~v~~sp~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
..|..+|.+.+|+|-.. .+|+|+.|-..++|++......+.....| +|+ ..+.++ +..
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~l--------rh~-----~~~~~~--------s~~ 233 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVL--------RHC-----IREGGK--------SVP 233 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhh--------hhh-----hhhhcc--------cCC
Confidence 34999999999999865 99999999999999986421110000000 001 111111 122
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
-...|++++| +.+|..|++|+.||.+++|+........
T Consensus 234 ~nkdVT~L~W--n~~G~~LatG~~~G~~riw~~~G~l~~t---------------------------------------- 271 (524)
T KOG0273|consen 234 SNKDVTSLDW--NNDGTLLATGSEDGEARIWNKDGNLIST---------------------------------------- 271 (524)
T ss_pred ccCCcceEEe--cCCCCeEEEeecCcEEEEEecCchhhhh----------------------------------------
Confidence 2367999999 6689999999999999999987653211
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 269 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~ 269 (513)
+..|.++|.++.|+..|.+|+++ -|+++.+||..++....
T Consensus 272 -------------------------------------l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q-- 312 (524)
T KOG0273|consen 272 -------------------------------------LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ-- 312 (524)
T ss_pred -------------------------------------hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE--
Confidence 46889999999999999999999 59999999998665433
Q ss_pred cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287 270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 349 (513)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 349 (513)
.+.-|..+..++.|-.+ ..|++++.|+.|+|+.+..... +.+ +.+|.++|.++.|+
T Consensus 313 ------~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P----~~t------------~~GH~g~V~alk~n 368 (524)
T KOG0273|consen 313 ------QFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRP----VKT------------FIGHHGEVNALKWN 368 (524)
T ss_pred ------eeeeccCCccceEEecC--ceEeecCCCceEEEEEecCCCc----cee------------eecccCceEEEEEC
Confidence 34557777688999876 4799999999999998865443 333 55677999999999
Q ss_pred ecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC---------CEEEEEeCCC
Q 010287 350 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG---------GRVATGSYSN 419 (513)
Q Consensus 350 p~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~dg 419 (513)
|.|.+|++++| ++++||.... ......+..|... |..+.|+|+| ..+++++.|+
T Consensus 369 ~tg~LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hske---------------i~t~~wsp~g~v~~n~~~~~~l~sas~ds 432 (524)
T KOG0273|consen 369 PTGSLLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKE---------------IYTIKWSPTGPVTSNPNMNLMLASASFDS 432 (524)
T ss_pred CCCceEEEecCCCeeEeeecCC-Ccchhhhhhhccc---------------eeeEeecCCCCccCCCcCCceEEEeecCC
Confidence 99999999987 9999999885 7777888888754 4478888875 3788999999
Q ss_pred cEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCE
Q 010287 420 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENS 499 (513)
Q Consensus 420 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~ 499 (513)
+|++||+..+ ..+.++..|..||++++|+|+|+++|+|+.||.|.+ |..... .......-.+.|..+.|+.+|+.
T Consensus 433 tV~lwdv~~g-v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~i---ws~~~~-~l~~s~~~~~~Ifel~Wn~~G~k 507 (524)
T KOG0273|consen 433 TVKLWDVESG-VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHI---WSTKTG-KLVKSYQGTGGIFELCWNAAGDK 507 (524)
T ss_pred eEEEEEccCC-ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEe---ccccch-heeEeecCCCeEEEEEEcCCCCE
Confidence 9999999988 445889999999999999999999999999999999 322211 11122223567999999999988
Q ss_pred EE-EEcCCcEEEE
Q 010287 500 IA-CAASNSLYMY 511 (513)
Q Consensus 500 la-~~~~~~~~i~ 511 (513)
|+ +.+++.+++.
T Consensus 508 l~~~~sd~~vcvl 520 (524)
T KOG0273|consen 508 LGACASDGSVCVL 520 (524)
T ss_pred EEEEecCCCceEE
Confidence 87 5567766654
No 18
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-36 Score=269.70 Aligned_cols=330 Identities=16% Similarity=0.227 Sum_probs=267.2
Q ss_pred cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
...|++.|.++.|+|...+++++-.+|.|.|||.++...+ +.+.-.+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmV-----------------------ksfeV~~---------- 55 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMV-----------------------KSFEVSE---------- 55 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceee-----------------------eeeeecc----------
Confidence 4458999999999999999999999999999998776642 3444344
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
-+|.+..|.+ ..+.+++|+.|..||||+..+++....
T Consensus 56 --~PvRa~kfia--RknWiv~GsDD~~IrVfnynt~ekV~~--------------------------------------- 92 (794)
T KOG0276|consen 56 --VPVRAAKFIA--RKNWIVTGSDDMQIRVFNYNTGEKVKT--------------------------------------- 92 (794)
T ss_pred --cchhhheeee--ccceEEEecCCceEEEEecccceeeEE---------------------------------------
Confidence 6788899976 445899999999999999998874443
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 269 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~ 269 (513)
+.+|.+-|++++.+|...+++++ +|-+|++||.+..-.+.+
T Consensus 93 -------------------------------------FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q- 134 (794)
T KOG0276|consen 93 -------------------------------------FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ- 134 (794)
T ss_pred -------------------------------------eeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee-
Confidence 36888999999999999999998 799999999987665544
Q ss_pred cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287 270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 349 (513)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 349 (513)
.+++|...|.+++|+|.+++.|++++.|++|++|.+.+... ..+ +.+|...|+|+.+-
T Consensus 135 ------tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~----nfT------------l~gHekGVN~Vdyy 192 (794)
T KOG0276|consen 135 ------TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP----NFT------------LEGHEKGVNCVDYY 192 (794)
T ss_pred ------EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC----cee------------eeccccCcceEEec
Confidence 67999999999999999989999999999999999977554 344 44566889999998
Q ss_pred e--cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEec
Q 010287 350 R--NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 426 (513)
Q Consensus 350 p--~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 426 (513)
+ |..+|++|+| .+++|||.++ ..+++++.+|...+ ..+.|+|.-.++++|+.||+++||+.
T Consensus 193 ~~gdkpylIsgaDD~tiKvWDyQt-k~CV~TLeGHt~Nv---------------s~v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 193 TGGDKPYLISGADDLTIKVWDYQT-KSCVQTLEGHTNNV---------------SFVFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred cCCCcceEEecCCCceEEEeecch-HHHHHHhhcccccc---------------eEEEecCCCcEEEEecCCccEEEecC
Confidence 7 4579999886 9999999997 89999999999874 48999999999999999999999999
Q ss_pred CCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCcc--ccCC-------------------------
Q 010287 427 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSAL--DANG------------------------- 479 (513)
Q Consensus 427 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~--~~~~------------------------- 479 (513)
.+. +...++......+++++..+..+.++.|...|.|.+.-+.+.... ...+
T Consensus 257 ~Ty-~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~ 335 (794)
T KOG0276|consen 257 KTY-KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVT 335 (794)
T ss_pred cce-ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecCCccEEEEcCceeeeeeceeccCccccc
Confidence 887 444777777888999999999999999999998877111110000 0000
Q ss_pred ---------cccc-ccCCeeEEEEeCCCCEEEEEcCCcEEEEeC
Q 010287 480 ---------NAFD-FSMKLLHLAWHPSENSIACAASNSLYMYYA 513 (513)
Q Consensus 480 ---------~~~~-~~~~i~~~~~sp~~~~la~~~~~~~~i~~~ 513 (513)
+.++ ..--...++-||+|+++++++++-.+||.|
T Consensus 336 DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTa 379 (794)
T KOG0276|consen 336 DGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTA 379 (794)
T ss_pred CCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEe
Confidence 0000 011235678899999999999999999975
No 19
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.8e-36 Score=245.09 Aligned_cols=287 Identities=18% Similarity=0.276 Sum_probs=232.8
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
...+|++.|..+.|+|+|.+||+|+.|..|.+|++.+... ....+.+|.
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce----------------------N~~~lkgHs--------- 90 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE----------------------NFWVLKGHS--------- 90 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc----------------------ceeeecccc---------
Confidence 4568999999999999999999999999999999765443 224467898
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
++|..+.| ..|++.+++++.|++++.||+++|+....
T Consensus 91 ---gAVM~l~~--~~d~s~i~S~gtDk~v~~wD~~tG~~~rk-------------------------------------- 127 (338)
T KOG0265|consen 91 ---GAVMELHG--MRDGSHILSCGTDKTVRGWDAETGKRIRK-------------------------------------- 127 (338)
T ss_pred ---ceeEeeee--ccCCCEEEEecCCceEEEEecccceeeeh--------------------------------------
Confidence 99999999 55888999999999999999999986543
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEE-E-cCCeEEEEEcCCCccee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQSF 267 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~-~d~~i~vwd~~~~~~~~ 267 (513)
..+|..-|+++.-+.-|..++. + +|+++++||+++....
T Consensus 128 --------------------------------------~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~- 168 (338)
T KOG0265|consen 128 --------------------------------------HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI- 168 (338)
T ss_pred --------------------------------------hccccceeeecCccccCCeEEEecCCCceEEEEeecccchh-
Confidence 2466666777775555555554 5 6999999999955433
Q ss_pred eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287 268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 347 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 347 (513)
+ .......++++.|..++ ..+.+|+-|+.|++||++.+.. .++ +.||...|+.+.
T Consensus 169 ~--------t~~~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d~----~~~------------lsGh~DtIt~ls 223 (338)
T KOG0265|consen 169 K--------TFENKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKNDG----LYT------------LSGHADTITGLS 223 (338)
T ss_pred h--------ccccceeEEEEEecccc-cceeeccccCceeeeccccCcc----eEE------------eecccCceeeEE
Confidence 1 12235678999999998 8899999999999999988765 344 455668899999
Q ss_pred EeecCCEEEEEe-CCeEEEEEccC---CCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEE
Q 010287 348 FARNGRHILSRD-YMTLKLWDINM---DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 423 (513)
Q Consensus 348 ~sp~~~~l~~~~-~~~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 423 (513)
.+|+|.++.+-+ |.++++||++. ..+.+..+.++...-. . ....++|+|++..+.+|+.|..+++
T Consensus 224 ls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfe----------k-nlL~cswsp~~~~i~ags~dr~vyv 292 (338)
T KOG0265|consen 224 LSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFE----------K-NLLKCSWSPNGTKITAGSADRFVYV 292 (338)
T ss_pred eccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhh----------h-hcceeeccCCCCccccccccceEEE
Confidence 999999999976 59999999984 1233566666553210 0 0247899999999999999999999
Q ss_pred EecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 424 FGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 424 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
||.... ..+..+.+|...|..+.|.|...+|.+++.|..|.+
T Consensus 293 wd~~~r-~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 293 WDTTSR-RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred eecccc-cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 998865 566899999999999999999999999999999998
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-35 Score=238.35 Aligned_cols=293 Identities=18% Similarity=0.236 Sum_probs=227.0
Q ss_pred EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (513)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (513)
+...+.+|+ +.|+.++-.+. +...+++++.|+++.+|++.......
T Consensus 7 l~~tl~gh~------------d~Vt~la~~~~-~~~~l~sasrDk~ii~W~L~~dd~~~--------------------- 52 (315)
T KOG0279|consen 7 LRGTLEGHT------------DWVTALAIKIK-NSDILVSASRDKTIIVWKLTSDDIKY--------------------- 52 (315)
T ss_pred eeeeecCCC------------ceEEEEEeecC-CCceEEEcccceEEEEEEeccCcccc---------------------
Confidence 455688999 88999999765 45689999999999999997652111
Q ss_pred ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-
Q 010287 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 250 (513)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~- 250 (513)
+.+.+ .+.+|...|..+..+++|++.+++
T Consensus 53 -------------------------------------------------G~~~r-~~~GHsH~v~dv~~s~dg~~alS~s 82 (315)
T KOG0279|consen 53 -------------------------------------------------GVPVR-RLTGHSHFVSDVVLSSDGNFALSAS 82 (315)
T ss_pred -------------------------------------------------Cceee-eeeccceEecceEEccCCceEEecc
Confidence 11122 257899999999999999999999
Q ss_pred cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCC
Q 010287 251 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 330 (513)
Q Consensus 251 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 330 (513)
.|+++++||+.+++... .+.+|...|.+++|++|. +.+++|+.|.+|++|+...... .+...
T Consensus 83 wD~~lrlWDl~~g~~t~--------~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck-----~t~~~---- 144 (315)
T KOG0279|consen 83 WDGTLRLWDLATGESTR--------RFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCK-----YTIHE---- 144 (315)
T ss_pred ccceEEEEEecCCcEEE--------EEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEE-----EEEec----
Confidence 69999999999875443 568999999999999998 9999999999999999865432 11111
Q ss_pred CCccccccccccEEEEEEeec--CCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC
Q 010287 331 GTRSFFTEIIASISDIKFARN--GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 407 (513)
Q Consensus 331 ~~~~~~~~~~~~v~~i~~sp~--~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 407 (513)
..+.+.|.|+.|+|+ ..+|++++ |++|++||+++ .+....+.+|.+. ++.+.+||
T Consensus 145 ------~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~gh~~~---------------v~t~~vSp 202 (315)
T KOG0279|consen 145 ------DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFIGHSGY---------------VNTVTVSP 202 (315)
T ss_pred ------CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-cchhhcccccccc---------------EEEEEECC
Confidence 112479999999997 67888877 59999999996 8888888898887 45899999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE--ecCCCCCccccCCccccc-
Q 010287 408 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VKGADNSALDANGNAFDF- 484 (513)
Q Consensus 408 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~--~~~~~~~~~~~~~~~~~~- 484 (513)
||..+++|+.||.+.+||+..++. .....+..+|.+++|+|+..+|+.+... .|+| .+..... .++..+..+.
T Consensus 203 DGslcasGgkdg~~~LwdL~~~k~--lysl~a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v-~~l~~d~~g~s 278 (315)
T KOG0279|consen 203 DGSLCASGGKDGEAMLWDLNEGKN--LYSLEAFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESKAVV-EELKLDGIGPS 278 (315)
T ss_pred CCCEEecCCCCceEEEEEccCCce--eEeccCCCeEeeEEecCCceeEeeccCC-ceEEEeccchhhh-hhccccccccc
Confidence 999999999999999999998744 3445778899999999999888777544 4777 1111111 0111111111
Q ss_pred ----cCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 485 ----SMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 485 ----~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
.-...+++|++||..|..+- ++.+.+|.
T Consensus 279 ~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 279 SKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred cccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 23457889999999998775 88888885
No 21
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.1e-36 Score=251.90 Aligned_cols=286 Identities=14% Similarity=0.235 Sum_probs=239.1
Q ss_pred cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
..+|.++|.|+++.|..+++++|+.|++|+|||+.+++. ...+.||.
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L-----------------------kltltGhi---------- 193 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL-----------------------KLTLTGHI---------- 193 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE-----------------------EEeecchh----------
Confidence 458999999999999999999999999999999998874 46788998
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
..|..+++++.. .++++++.|+.|+.||++..+.+..
T Consensus 194 --~~vr~vavS~rH--pYlFs~gedk~VKCwDLe~nkvIR~--------------------------------------- 230 (460)
T KOG0285|consen 194 --ETVRGVAVSKRH--PYLFSAGEDKQVKCWDLEYNKVIRH--------------------------------------- 230 (460)
T ss_pred --heeeeeeecccC--ceEEEecCCCeeEEEechhhhhHHH---------------------------------------
Confidence 889999997644 4999999999999999998765432
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 269 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~ 269 (513)
..+|-..|.|++.+|.-..|++| .|.++++||+++.....
T Consensus 231 -------------------------------------YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~-- 271 (460)
T KOG0285|consen 231 -------------------------------------YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH-- 271 (460)
T ss_pred -------------------------------------hccccceeEEEeccccceeEEecCCcceEEEeeecccceEE--
Confidence 25888889999999999999998 79999999999766554
Q ss_pred cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287 270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 349 (513)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 349 (513)
.+.+|..+|.++.+.|.+ -.+++|+.|++|++||++.++.. .+ +..|+..+++++.+
T Consensus 272 ------~l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~----~t------------lt~hkksvral~lh 328 (460)
T KOG0285|consen 272 ------VLSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTM----IT------------LTHHKKSVRALCLH 328 (460)
T ss_pred ------EecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCcee----Ee------------eecccceeeEEecC
Confidence 568999999999999988 68999999999999999998762 22 34466789999999
Q ss_pred ecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 350 RNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 350 p~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
|....+++++-..++-|++.. +..+..+.+|... +..++...|+ ++++|+++|.+.+||.+++
T Consensus 329 P~e~~fASas~dnik~w~~p~-g~f~~nlsgh~~i---------------intl~~nsD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 329 PKENLFASASPDNIKQWKLPE-GEFLQNLSGHNAI---------------INTLSVNSDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred CchhhhhccCCccceeccCCc-cchhhccccccce---------------eeeeeeccCc-eEEEcCCceEEEEEecCcC
Confidence 999999998878999999996 8888888888776 3377777665 7889999999999999987
Q ss_pred Cccc--eeec--C---CCCceeEEEEcCCCCceeeecCCCeEEEecCCC
Q 010287 430 SAES--TTLE--A---SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD 471 (513)
Q Consensus 430 ~~~~--~~~~--~---~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~ 471 (513)
-.-. ++.. + ....|.+.+|...|..|++|..|..|++.+..+
T Consensus 392 ~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 392 HNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 3321 1111 1 234578889999999999999999999944333
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.8e-35 Score=254.04 Aligned_cols=278 Identities=19% Similarity=0.317 Sum_probs=227.2
Q ss_pred cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
.......|++++|+.+|.+||+|+.||.++||+..+... ..|.-|.
T Consensus 231 s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~------------------------~tl~~Hk---------- 276 (524)
T KOG0273|consen 231 SVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI------------------------STLGQHK---------- 276 (524)
T ss_pred cCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhh------------------------hhhhccC----------
Confidence 334567999999999999999999999999999765543 5677888
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
++|.++.| +..|++|++++.|+++.+||..++...+.+.++
T Consensus 277 --gPI~slKW--nk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~----------------------------------- 317 (524)
T KOG0273|consen 277 --GPIFSLKW--NKKGTYILSGGVDGTTILWDAHTGTVKQQFEFH----------------------------------- 317 (524)
T ss_pred --CceEEEEE--cCCCCEEEeccCCccEEEEeccCceEEEeeeec-----------------------------------
Confidence 99999999 568889999999999999999998877654433
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 269 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~ 269 (513)
..+-..+.|-.+. .|+++ .|+.|+|+.+.......
T Consensus 318 -----------------------------------------s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~-- 353 (524)
T KOG0273|consen 318 -----------------------------------------SAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVK-- 353 (524)
T ss_pred -----------------------------------------cCCccceEEecCc-eEeecCCCceEEEEEecCCCcce--
Confidence 2333456776555 45555 79999999997544332
Q ss_pred cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287 270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 349 (513)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 349 (513)
++.+|...|.++.|+|.+ .+|++++.|++++||......... . +.+|...|..+.|+
T Consensus 354 ------t~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~~~----~------------l~~Hskei~t~~ws 410 (524)
T KOG0273|consen 354 ------TFIGHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNSVH----D------------LQAHSKEIYTIKWS 410 (524)
T ss_pred ------eeecccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcchh----h------------hhhhccceeeEeec
Confidence 567899999999999999 999999999999999976554321 1 56677889999999
Q ss_pred ecC---------CEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC
Q 010287 350 RNG---------RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 419 (513)
Q Consensus 350 p~~---------~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 419 (513)
|.| ..+++++ +++|++||+.. +.++..+..|..+ |++++|+|+|+++++|+.||
T Consensus 411 p~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~i~~f~kH~~p---------------VysvafS~~g~ylAsGs~dg 474 (524)
T KOG0273|consen 411 PTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVPIHTLMKHQEP---------------VYSVAFSPNGRYLASGSLDG 474 (524)
T ss_pred CCCCccCCCcCCceEEEeecCCeEEEEEccC-CceeEeeccCCCc---------------eEEEEecCCCcEEEecCCCC
Confidence 853 3566654 69999999997 9999999989876 56999999999999999999
Q ss_pred cEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 420 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 420 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.|.+|+.+++ ++.+.+.+ ...|..++|+.+|.+|..+-.|+.+.+
T Consensus 475 ~V~iws~~~~-~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcv 519 (524)
T KOG0273|consen 475 CVHIWSTKTG-KLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCV 519 (524)
T ss_pred eeEeccccch-heeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceE
Confidence 9999999988 44444443 445889999999999998888888876
No 23
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-35 Score=248.07 Aligned_cols=300 Identities=15% Similarity=0.205 Sum_probs=252.1
Q ss_pred ccccccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCC
Q 010287 9 EAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHP 88 (513)
Q Consensus 9 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (513)
.+.-++..|-+.-. ......+|..+|+.+-|+|+-.++++++.|++|++||..+++.
T Consensus 86 ~~~~~~~~wipRp~----l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~------------------- 142 (406)
T KOG0295|consen 86 GSKRTPALWIPRPN----LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL------------------- 142 (406)
T ss_pred cCccChhhcCCCCC----chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh-------------------
Confidence 33445666644321 1123567999999999999999999999999999999988874
Q ss_pred cceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcc
Q 010287 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (513)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (513)
...++||+ +.|..|+| +..|.++++++.|-.+++||.++.. .++.
T Consensus 143 ----e~~LrGHt------------~sv~di~~--~a~Gk~l~tcSsDl~~~LWd~~~~~-~c~k---------------- 187 (406)
T KOG0295|consen 143 ----ERSLRGHT------------DSVFDISF--DASGKYLATCSSDLSAKLWDFDTFF-RCIK---------------- 187 (406)
T ss_pred ----hhhhhccc------------cceeEEEE--ecCccEEEecCCccchhheeHHHHH-HHHH----------------
Confidence 36789999 88999999 6678899999999999999998641 1110
Q ss_pred cCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEE
Q 010287 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 248 (513)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 248 (513)
.+.+|...|.+++|-|.|.+++
T Consensus 188 ----------------------------------------------------------s~~gh~h~vS~V~f~P~gd~il 209 (406)
T KOG0295|consen 188 ----------------------------------------------------------SLIGHEHGVSSVFFLPLGDHIL 209 (406)
T ss_pred ----------------------------------------------------------HhcCcccceeeEEEEecCCeee
Confidence 0357888899999999999999
Q ss_pred EE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287 249 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 327 (513)
Q Consensus 249 s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 327 (513)
++ .|.+|+.|++.++.... .+.+|...|..+..+.|| .++++++.|.++++|-+.+++.. ..
T Consensus 210 S~srD~tik~We~~tg~cv~--------t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k----~~---- 272 (406)
T KOG0295|consen 210 SCSRDNTIKAWECDTGYCVK--------TFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCK----AE---- 272 (406)
T ss_pred ecccccceeEEecccceeEE--------eccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhh----hh----
Confidence 99 69999999999876553 678999999999999999 99999999999999999887541 11
Q ss_pred cCCCCccccccccccEEEEEEeec---------------CCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccc
Q 010287 328 EAPGTRSFFTEIIASISDIKFARN---------------GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 391 (513)
Q Consensus 328 ~~~~~~~~~~~~~~~v~~i~~sp~---------------~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
+.+|.-+|.+++|.|. ++++++++ |++|++||+.+ +.++.++.+|...+
T Consensus 273 --------lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwV------ 337 (406)
T KOG0295|consen 273 --------LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWV------ 337 (406)
T ss_pred --------hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-CeEEEEEeccccee------
Confidence 4455567888888653 36888888 49999999998 99999999999884
Q ss_pred cccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 392 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 392 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
..++|+|.|+||+++.+|+++++||+++..+. .+++.|..-+..+.|..+..++++|+.|..+++
T Consensus 338 ---------r~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm-k~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kv 402 (406)
T KOG0295|consen 338 ---------RGVAFSPGGKYILSCADDKTLRVWDLKNLQCM-KTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 402 (406)
T ss_pred ---------eeeEEcCCCeEEEEEecCCcEEEEEeccceee-eccCCCcceeEEEecCCCCceEEeccccceeee
Confidence 48999999999999999999999999988544 788899999999999999999999999999988
No 24
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.1e-36 Score=274.68 Aligned_cols=265 Identities=20% Similarity=0.314 Sum_probs=215.4
Q ss_pred ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCC-CccCccccc-----cc--cccCCCcceEeccccCCCCcccc
Q 010287 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNG-GQRRDLEMM-----DY--SMSRHPEFRYKTEFQSHEPEFDY 105 (513)
Q Consensus 34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~-~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~h~~~~~~ 105 (513)
-...++|..|++|+.+||.|-.|..|++|.+...+... ..-..+.+. +. +.....+-....++.||.
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~----- 451 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS----- 451 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC-----
Confidence 35789999999999999999999999999988543210 000011111 11 111122222334477888
Q ss_pred cccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCc
Q 010287 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (513)
Q Consensus 106 ~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 185 (513)
++|....|+| +.++|+++|.|+++|+|.+.+..+.-.
T Consensus 452 -------GPVyg~sFsP--d~rfLlScSED~svRLWsl~t~s~~V~---------------------------------- 488 (707)
T KOG0263|consen 452 -------GPVYGCSFSP--DRRFLLSCSEDSSVRLWSLDTWSCLVI---------------------------------- 488 (707)
T ss_pred -------Cceeeeeecc--cccceeeccCCcceeeeecccceeEEE----------------------------------
Confidence 9999999966 677999999999999999998764332
Q ss_pred cccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCc
Q 010287 186 GERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 264 (513)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~ 264 (513)
..+|..+|+.+.|+|-|-+|+++ .|++.++|......
T Consensus 489 ------------------------------------------y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~ 526 (707)
T KOG0263|consen 489 ------------------------------------------YKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK 526 (707)
T ss_pred ------------------------------------------ecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC
Confidence 25889999999999999999999 79999999987544
Q ss_pred ceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEE
Q 010287 265 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 344 (513)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 344 (513)
.. +.+.+|.+.|.|+.|+|+. .++++||.|.+|++||+.+|.. ++. |.||+++|.
T Consensus 527 Pl--------RifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~----VRi------------F~GH~~~V~ 581 (707)
T KOG0263|consen 527 PL--------RIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNS----VRI------------FTGHKGPVT 581 (707)
T ss_pred ch--------hhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcE----EEE------------ecCCCCceE
Confidence 32 2568999999999999998 9999999999999999999876 444 566779999
Q ss_pred EEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEE
Q 010287 345 DIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 423 (513)
Q Consensus 345 ~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 423 (513)
+++|||+|++|++|++ +.|.+||+.+ +.++..+.+|.+. |.++.|+.||..||+|+.|++|++
T Consensus 582 al~~Sp~Gr~LaSg~ed~~I~iWDl~~-~~~v~~l~~Ht~t---------------i~SlsFS~dg~vLasgg~DnsV~l 645 (707)
T KOG0263|consen 582 ALAFSPCGRYLASGDEDGLIKIWDLAN-GSLVKQLKGHTGT---------------IYSLSFSRDGNVLASGGADNSVRL 645 (707)
T ss_pred EEEEcCCCceEeecccCCcEEEEEcCC-CcchhhhhcccCc---------------eeEEEEecCCCEEEecCCCCeEEE
Confidence 9999999999999986 9999999997 8999999999665 459999999999999999999999
Q ss_pred EecCCC
Q 010287 424 FGCSEG 429 (513)
Q Consensus 424 wd~~~~ 429 (513)
||+...
T Consensus 646 WD~~~~ 651 (707)
T KOG0263|consen 646 WDLTKV 651 (707)
T ss_pred EEchhh
Confidence 998754
No 25
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.3e-34 Score=242.88 Aligned_cols=336 Identities=12% Similarity=0.102 Sum_probs=262.1
Q ss_pred cccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287 29 GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (513)
Q Consensus 29 ~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (513)
..+..|+++|.+++.+|+.+++|||+.|..-.||++.++.. ..++.+|+
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~-----------------------~~eltgHK-------- 106 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF-----------------------AGELTGHK-------- 106 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc-----------------------eeEecCCC--------
Confidence 45778999999999999999999999999999999988774 36788999
Q ss_pred ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (513)
Q Consensus 109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 188 (513)
+.|+++.| +.++.+|++|..+|.|+||+..++.....+.
T Consensus 107 ----DSVt~~~F--shdgtlLATGdmsG~v~v~~~stg~~~~~~~----------------------------------- 145 (399)
T KOG0296|consen 107 ----DSVTCCSF--SHDGTLLATGDMSGKVLVFKVSTGGEQWKLD----------------------------------- 145 (399)
T ss_pred ----CceEEEEE--ccCceEEEecCCCccEEEEEcccCceEEEee-----------------------------------
Confidence 99999999 6799999999999999999999987554321
Q ss_pred ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287 189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 267 (513)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~ 267 (513)
.....+.-+.|+|.+..|+.| .||.+.+|.+..+. ..
T Consensus 146 -----------------------------------------~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~ 183 (399)
T KOG0296|consen 146 -----------------------------------------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LC 183 (399)
T ss_pred -----------------------------------------cccCceEEEEecccccEEEeecCCCcEEEEECCCcc-ee
Confidence 112447789999999999999 79999999998653 32
Q ss_pred eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287 268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 347 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 347 (513)
+ .+.+|+.++++=.|.|+| +.++++..||+|++||+.++... ..+...+. ....++.
T Consensus 184 k-------v~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~----~~~~~~e~-----------~~~~~~~ 240 (399)
T KOG0296|consen 184 K-------VMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPL----HKITQAEG-----------LELPCIS 240 (399)
T ss_pred e-------EecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCcee----EEeccccc-----------CcCCccc
Confidence 2 568999999999999999 99999999999999999998763 22222211 3567788
Q ss_pred EeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEec
Q 010287 348 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 426 (513)
Q Consensus 348 ~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 426 (513)
++..+..++.|+. +.+++-+..+ ++.+....+... ... ..+......|-.+.++..-.+.|+|+-||+|.|||+
T Consensus 241 ~~~~~~~~~~g~~e~~~~~~~~~s-gKVv~~~n~~~~-~l~---~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~ 315 (399)
T KOG0296|consen 241 LNLAGSTLTKGNSEGVACGVNNGS-GKVVNCNNGTVP-ELK---PSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDL 315 (399)
T ss_pred cccccceeEeccCCccEEEEcccc-ceEEEecCCCCc-ccc---ccchhhhhhhhhcccccccchhhcccccceEEEEec
Confidence 8888888888775 7777777665 655554442110 000 001111112225566666778899999999999999
Q ss_pred CCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-C
Q 010287 427 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-S 505 (513)
Q Consensus 427 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~ 505 (513)
... .+...-.|..+|.++.|-+ ..+|++++.||.|+. |+.....+.....+|...|.+++.+|+.+++++++ +
T Consensus 316 a~~--~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~---wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D 389 (399)
T KOG0296|consen 316 AAS--TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQ---WDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDD 389 (399)
T ss_pred ccc--hhheeccCCCceEEEEEcC-cchheeeccCceEEe---eeccccceEEEEecCchheeEEEEcCCCcEEEEecCC
Confidence 865 3345567888899999999 889999999999999 55544456677888999999999999999999888 6
Q ss_pred CcEEEEe
Q 010287 506 NSLYMYY 512 (513)
Q Consensus 506 ~~~~i~~ 512 (513)
+...||.
T Consensus 390 ~~a~VF~ 396 (399)
T KOG0296|consen 390 NTALVFE 396 (399)
T ss_pred CeEEEEe
Confidence 6666664
No 26
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-34 Score=263.82 Aligned_cols=421 Identities=14% Similarity=0.167 Sum_probs=290.4
Q ss_pred ccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccc
Q 010287 28 AGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (513)
Q Consensus 28 ~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (513)
...+-+|..+|+++.|+..|..||+|+.|+.|.+||+-...- ...+.||+
T Consensus 100 ~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G-----------------------l~rL~GHk------- 149 (888)
T KOG0306|consen 100 LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG-----------------------LFRLRGHK------- 149 (888)
T ss_pred eeeecccccceEEEEEcccCceEeecCCCccEEEEEecccee-----------------------eEEeecch-------
Confidence 445678999999999999999999999999999999865442 24578999
Q ss_pred cccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCC-------cccCc---------
Q 010287 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGP-------IFGSH--------- 171 (513)
Q Consensus 108 ~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~--------- 171 (513)
+.|+..-|. .+.+.+++.+.|+.|++||+++..|..+...+......++... .....
T Consensus 150 -----d~iT~~~F~--~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~ 222 (888)
T KOG0306|consen 150 -----DSITQALFL--NGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFED 222 (888)
T ss_pred -----HHHhHHhcc--CCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeeccc
Confidence 889999994 4567899999999999999999877665433322210000000 00000
Q ss_pred ---ccccCceeccCCCcccc------ccCCCCCC----------------------------------------------
Q 010287 172 ---VSAIPKSYMANGGCGER------NFGCASND---------------------------------------------- 196 (513)
Q Consensus 172 ---~~~~~~~~~~~g~~~~~------~~~~~~~~---------------------------------------------- 196 (513)
.......+...|....- ......++
T Consensus 223 D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~ 302 (888)
T KOG0306|consen 223 DEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDD 302 (888)
T ss_pred ccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccc
Confidence 00011111111111000 00000000
Q ss_pred -----------------------CCcCCC----------CCCceeceeeccCCcccccce---eeEeeccccCCeEEEEe
Q 010287 197 -----------------------SSFPPG----------GVSSLRLPVVTSQETNLVAGC---RRIYAHAHDYHINSISN 240 (513)
Q Consensus 197 -----------------------~~~~~~----------~~~~i~~~~~~~~~~~~~~~~---~~~~~~~h~~~v~~~~~ 240 (513)
+.++++ .++++..+.+... ......+ ......+|...|+++++
T Consensus 303 v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s-~~~~p~~~~~~~i~~~GHR~dVRsl~v 381 (888)
T KOG0306|consen 303 VEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENS-GKTSPEADRTSNIEIGGHRSDVRSLCV 381 (888)
T ss_pred hhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccC-CCCCccccccceeeeccchhheeEEEe
Confidence 000000 1112222222220 0000111 11234789999999999
Q ss_pred ccCCCEEEEEcCCeEEEEEcCCCcceeee----------------------------cccCc----cccccccCCeEEEE
Q 010287 241 NSDGETFISADDLRINLWNLEISNQSFNI----------------------------VDVKP----ANMEDLTEVITSAE 288 (513)
Q Consensus 241 ~~~~~~l~s~~d~~i~vwd~~~~~~~~~~----------------------------~~~~~----~~~~~~~~~i~~~~ 288 (513)
+.+...+++|..+.+++|+..+.+...++ +++.. ..++.|.+.|.+++
T Consensus 382 S~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~ 461 (888)
T KOG0306|consen 382 SSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSIS 461 (888)
T ss_pred ecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeee
Confidence 99999999998999999999865433221 11110 23468999999999
Q ss_pred EeCCCCeEEEEEeCCCcEEEEEcCCcccc-cccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEE
Q 010287 289 FHPTHCNMLAYSSSKGSIRLIDMRQSALC-DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLW 366 (513)
Q Consensus 289 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iw 366 (513)
.+||+ ..+++|+.|.+|++||...-... ....+.+..+... .-.....|.|+.+||||++|+++- +.+|+||
T Consensus 462 ~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~r-----tLel~ddvL~v~~Spdgk~LaVsLLdnTVkVy 535 (888)
T KOG0306|consen 462 LSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTR-----TLELEDDVLCVSVSPDGKLLAVSLLDNTVKVY 535 (888)
T ss_pred ecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccce-----EEeccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence 99999 99999999999999997532110 0000111111000 011235799999999999999986 5999999
Q ss_pred EccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEE
Q 010287 367 DINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQ 446 (513)
Q Consensus 367 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 446 (513)
-+++ .+..-.+.+|.-+ |.++.+|||++.++|||.|.+|++|-+.-|.+. ..+-+|...|.++
T Consensus 536 flDt-lKFflsLYGHkLP---------------V~smDIS~DSklivTgSADKnVKiWGLdFGDCH-KS~fAHdDSvm~V 598 (888)
T KOG0306|consen 536 FLDT-LKFFLSLYGHKLP---------------VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH-KSFFAHDDSVMSV 598 (888)
T ss_pred Eecc-eeeeeeecccccc---------------eeEEeccCCcCeEEeccCCCceEEeccccchhh-hhhhcccCceeEE
Confidence 9997 7777888888876 569999999999999999999999999887444 7788999999999
Q ss_pred EEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 447 VQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 447 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
.|.|....+.++|.|+.|+- |+-.+++......+|...|.+++.+|+|.++++++ |.++.+|.
T Consensus 599 ~F~P~~~~FFt~gKD~kvKq---WDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 599 QFLPKTHLFFTCGKDGKVKQ---WDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EEcccceeEEEecCcceEEe---echhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999999999999999 55544456666778999999999999999999888 68888884
No 27
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.9e-36 Score=257.39 Aligned_cols=278 Identities=18% Similarity=0.264 Sum_probs=228.2
Q ss_pred cccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccC
Q 010287 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (513)
Q Consensus 112 ~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 191 (513)
...|+.|+|. ++|+.|++|+..|.+.+|+...-....
T Consensus 96 kc~V~~v~Wt--PeGRRLltgs~SGEFtLWNg~~fnFEt----------------------------------------- 132 (464)
T KOG0284|consen 96 KCPVNVVRWT--PEGRRLLTGSQSGEFTLWNGTSFNFET----------------------------------------- 132 (464)
T ss_pred ccceeeEEEc--CCCceeEeecccccEEEecCceeeHHH-----------------------------------------
Confidence 3679999994 588999999999999999974322111
Q ss_pred CCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeec
Q 010287 192 CASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 270 (513)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~ 270 (513)
.+.+|..+|+++.|++++.++++| .+|.|++|+.+.....
T Consensus 133 -----------------------------------ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk---- 173 (464)
T KOG0284|consen 133 -----------------------------------ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK---- 173 (464)
T ss_pred -----------------------------------HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH----
Confidence 146899999999999999999999 6999999998743321
Q ss_pred ccCcccccc-ccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287 271 DVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 349 (513)
Q Consensus 271 ~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 349 (513)
.+.. |...|++++|+|++ ..|++++.||+|+|||.+.... .+ .+.+|.-.|.+++|+
T Consensus 174 -----~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~ke----e~------------vL~GHgwdVksvdWH 231 (464)
T KOG0284|consen 174 -----IIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKE----ER------------VLRGHGWDVKSVDWH 231 (464)
T ss_pred -----HhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCch----hh------------eeccCCCCcceeccC
Confidence 2344 44899999999988 9999999999999999876553 11 256777899999999
Q ss_pred ecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287 350 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 428 (513)
Q Consensus 350 p~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 428 (513)
|.-.+|++|++ ..|++||.++ +.++.++..|... |+.+.|+|++++|+++|.|..++++|+++
T Consensus 232 P~kgLiasgskDnlVKlWDprS-g~cl~tlh~HKnt---------------Vl~~~f~~n~N~Llt~skD~~~kv~DiR~ 295 (464)
T KOG0284|consen 232 PTKGLIASGSKDNLVKLWDPRS-GSCLATLHGHKNT---------------VLAVKFNPNGNWLLTGSKDQSCKVFDIRT 295 (464)
T ss_pred CccceeEEccCCceeEeecCCC-cchhhhhhhccce---------------EEEEEEcCCCCeeEEccCCceEEEEehhH
Confidence 99999999875 9999999997 9999999888876 67999999999999999999999999996
Q ss_pred CCccceeecCCCCceeEEEEcCCCC-ceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CC
Q 010287 429 GSAESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SN 506 (513)
Q Consensus 429 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~ 506 (513)
. +.+.++.+|...+.++.|+|-.. +|.+|+.||.|...... ...++..-...|...|.+++|+|-|.+||+|+ +.
T Consensus 296 m-kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~--~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~ 372 (464)
T KOG0284|consen 296 M-KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG--LEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDR 372 (464)
T ss_pred h-HHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc--ccccccCCCcccccceeeeeccccceeEeecCCCc
Confidence 5 56689999999999999999755 67889999999981111 11123333456899999999999999999999 55
Q ss_pred cEEEEe
Q 010287 507 SLYMYY 512 (513)
Q Consensus 507 ~~~i~~ 512 (513)
.+++|.
T Consensus 373 t~rfw~ 378 (464)
T KOG0284|consen 373 TVRFWT 378 (464)
T ss_pred ceeeec
Confidence 566553
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.3e-35 Score=231.87 Aligned_cols=238 Identities=13% Similarity=0.197 Sum_probs=191.4
Q ss_pred CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287 233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 312 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 312 (513)
+.|+.+...|+++.|+++..-.|++||+++.+.... .++++|...|+.+.|..+| +.+++|++||+++|||+|
T Consensus 41 sqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv------~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR 113 (311)
T KOG0315|consen 41 SQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPV------ATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLR 113 (311)
T ss_pred cceeeEEEcCCcchhhhccCCeeEEEEccCCCCCce------eEEeccCCceEEEEEeecC-eEEEecCCCceEEEEecc
Confidence 458999999999999999889999999998775322 2778999999999999999 999999999999999999
Q ss_pred CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccc
Q 010287 313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL 391 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
.... .+.++ |.++|+++..+|+...|++|+. |.|++||+.. ......+..... .
T Consensus 114 ~~~~----qR~~~-------------~~spVn~vvlhpnQteLis~dqsg~irvWDl~~-~~c~~~liPe~~-~------ 168 (311)
T KOG0315|consen 114 SLSC----QRNYQ-------------HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE-NSCTHELIPEDD-T------ 168 (311)
T ss_pred Cccc----chhcc-------------CCCCcceEEecCCcceEEeecCCCcEEEEEccC-CccccccCCCCC-c------
Confidence 8443 22222 3378999999999999999986 9999999985 333333322221 1
Q ss_pred cccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc-----cceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 392 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA-----ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 392 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.|.++...|||.+|+.+...|..++|++.+... .+..++.|..-+.++.+||++++||++|.|.+++|
T Consensus 169 -------~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~i 241 (311)
T KOG0315|consen 169 -------SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKI 241 (311)
T ss_pred -------ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEE
Confidence 145899999999999999999999999876432 23567789999999999999999999999999999
Q ss_pred ecCCCCCcc-ccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 467 VKGADNSAL-DANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 467 ~~~~~~~~~-~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
|....+ ..+....+|..-+..++||.|+.+|++|+ ++...+|.
T Consensus 242 ---wn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 242 ---WNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred ---EecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 433322 23334456888999999999999999888 66667774
No 29
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-34 Score=246.09 Aligned_cols=285 Identities=18% Similarity=0.322 Sum_probs=231.5
Q ss_pred cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
...|++.|.-+.||++|+|||+++.|.+..||.+.... .+++..++.+|.
T Consensus 220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~--------------------~~kl~~tlvgh~---------- 269 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV--------------------HFKLKKTLVGHS---------- 269 (519)
T ss_pred HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc--------------------ceeeeeeeeccc----------
Confidence 45799999999999999999999999999999976543 245677888998
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
.+|..|.|+| |+++|++++.|..+++||+.+|.+....
T Consensus 270 --~~V~yi~wSP--DdryLlaCg~~e~~~lwDv~tgd~~~~y-------------------------------------- 307 (519)
T KOG0293|consen 270 --QPVSYIMWSP--DDRYLLACGFDEVLSLWDVDTGDLRHLY-------------------------------------- 307 (519)
T ss_pred --CceEEEEECC--CCCeEEecCchHheeeccCCcchhhhhc--------------------------------------
Confidence 9999999965 8889999999999999999998754321
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 269 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~ 269 (513)
..+|...+.+++|.|||..+++| .|+++..||+.. +.. .
T Consensus 308 -------------------------------------~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~-~- 347 (519)
T KOG0293|consen 308 -------------------------------------PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NIL-G- 347 (519)
T ss_pred -------------------------------------ccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chh-h-
Confidence 12344668899999999999999 699999999983 222 1
Q ss_pred cccCcccccc-ccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287 270 VDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 348 (513)
Q Consensus 270 ~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 348 (513)
..++ ....|.+++..+|| +.+++.+.|..|++|+..+.... ..... ..+|++++.
T Consensus 348 ------~W~gvr~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr----~lise-------------~~~its~~i 403 (519)
T KOG0293|consen 348 ------NWEGVRDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDR----GLISE-------------EQPITSFSI 403 (519)
T ss_pred ------cccccccceeEEEEEcCCC-cEEEEEecccceeeechhhhhhh----ccccc-------------cCceeEEEE
Confidence 1122 13558999999999 88888889999999998764431 11111 157999999
Q ss_pred eecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC-CCCEEEEEeCCCcEEEEec
Q 010287 349 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGC 426 (513)
Q Consensus 349 sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~ 426 (513)
|.+++++++.- +..+++||++ +.+.++.+.+|..... +..-||-- +..++++|++|+.|+||+.
T Consensus 404 S~d~k~~LvnL~~qei~LWDl~-e~~lv~kY~Ghkq~~f-------------iIrSCFgg~~~~fiaSGSED~kvyIWhr 469 (519)
T KOG0293|consen 404 SKDGKLALVNLQDQEIHLWDLE-ENKLVRKYFGHKQGHF-------------IIRSCFGGGNDKFIASGSEDSKVYIWHR 469 (519)
T ss_pred cCCCcEEEEEcccCeeEEeecc-hhhHHHHhhcccccce-------------EEEeccCCCCcceEEecCCCceEEEEEc
Confidence 99999998864 4899999999 4888899999886532 22456654 4479999999999999999
Q ss_pred CCCCccceeecCCCCceeEEEEcCCCC-ceeeecCCCeEEE
Q 010287 427 SEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR 466 (513)
Q Consensus 427 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~ 466 (513)
.++ +++.++.+|...|++++|+|... .+|+++.||+|||
T Consensus 470 ~sg-kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRI 509 (519)
T KOG0293|consen 470 ISG-KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRI 509 (519)
T ss_pred cCC-ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEE
Confidence 988 66799999999999999999876 5799999999999
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.7e-34 Score=259.50 Aligned_cols=380 Identities=15% Similarity=0.154 Sum_probs=287.0
Q ss_pred ccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccC-CCCccccccccc
Q 010287 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEPEFDYLKSLE 110 (513)
Q Consensus 32 ~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~ 110 (513)
....+.|++++.+||+++|++++..+.+++|++.+++. ...+.+ |+
T Consensus 59 ~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~-----------------------irswKa~He---------- 105 (775)
T KOG0319|consen 59 NEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKL-----------------------IRSWKAIHE---------- 105 (775)
T ss_pred ccchhhhheeeecCCccEEEEeeccceEEEEEcccchH-----------------------hHhHhhccC----------
Confidence 34568899999999999999999999999999988764 356666 77
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
++|.-++|.| .+..+++|+.|+.++|||+..+.+...+..+.. ...++.|.|+-..
T Consensus 106 --~Pvi~ma~~~--~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gG---------------vVssl~F~~~~~~----- 161 (775)
T KOG0319|consen 106 --APVITMAFDP--TGTLLATGGADGRVKVWDIKNGYCTHSFKGHGG---------------VVSSLLFHPHWNR----- 161 (775)
T ss_pred --CCeEEEEEcC--CCceEEeccccceEEEEEeeCCEEEEEecCCCc---------------eEEEEEeCCccch-----
Confidence 9999999965 667999999999999999999988877665431 2224455555442
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcce---
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS--- 266 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~--- 266 (513)
.+.+++..++.+++|++..... +.. .+..|.+.|++++|++|+..++++ .|..+.+||+.+.+..
T Consensus 162 -----~lL~sg~~D~~v~vwnl~~~~t-----cl~-~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~l 230 (775)
T KOG0319|consen 162 -----WLLASGATDGTVRVWNLNDKRT-----CLH-TMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTL 230 (775)
T ss_pred -----hheeecCCCceEEEEEcccCch-----HHH-HHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhhee
Confidence 3458889999999999975443 111 146788889999999888777776 6888888887431000
Q ss_pred --------------------------------------------------------------------------eeecc-
Q 010287 267 --------------------------------------------------------------------------FNIVD- 271 (513)
Q Consensus 267 --------------------------------------------------------------------------~~~~~- 271 (513)
+.+++
T Consensus 231 p~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 231 PLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred chhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEc
Confidence 00000
Q ss_pred ---------------------------------------------cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287 272 ---------------------------------------------VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 306 (513)
Q Consensus 272 ---------------------------------------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 306 (513)
....-+.+|...|.++....+| .+|++|+.|.++
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~sv 389 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSV 389 (775)
T ss_pred cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceE
Confidence 0112346788888888866666 799999999999
Q ss_pred EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC-CEEEEEe-CCeEEEEEccCCCCCe-----e---
Q 010287 307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRD-YMTLKLWDINMDSGPV-----A--- 376 (513)
Q Consensus 307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~l~~~~-~~~v~iwd~~~~~~~~-----~--- 376 (513)
++|.+.++....-.+. ...+|.+.|.+++++..+ .++++++ |.++++|++.. .+.- .
T Consensus 390 ilWr~~~~~~~~~~~a------------~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~-s~~~~~~~~~~~~ 456 (775)
T KOG0319|consen 390 ILWRLNNNCSKSLCVA------------QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK-SKETAFPIVLTCR 456 (775)
T ss_pred EEEEecCCcchhhhhh------------hhcccccccceeeecccCccEEEEecCCceEEEecCCC-cccccccceehhh
Confidence 9999844332111111 146788999999998755 5777766 59999999974 1111 1
Q ss_pred -eeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCce
Q 010287 377 -TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR 455 (513)
Q Consensus 377 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 455 (513)
+...|.. +|.+++++|+.++++|||.|.+.+||+++.. ....++.+|...+.++.|+|..+.+
T Consensus 457 ~t~~aHdK---------------dIN~Vaia~ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~~dq~l 520 (775)
T KOG0319|consen 457 YTERAHDK---------------DINCVAIAPNDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSKNDQLL 520 (775)
T ss_pred HHHHhhcc---------------cccceEecCCCceEEecccccceeeecccCc-eEEEEeeCCccceEEEEecccccee
Confidence 1122332 2459999999999999999999999999954 5668999999999999999999999
Q ss_pred eeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 456 PLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 456 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
|++|.|.+|+| |....+.-.....+|...|..++|-.+++.|++++ ++-+++|+
T Consensus 521 aT~SgD~TvKI---W~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 521 ATCSGDKTVKI---WSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred EeccCCceEEE---EEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 99999999999 76665455555667999999999999999988665 77788886
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.1e-33 Score=268.35 Aligned_cols=287 Identities=23% Similarity=0.421 Sum_probs=236.9
Q ss_pred ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (513)
Q Consensus 34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (513)
|...|+|+.|+|+|+++++++.++.+++|+..+... .....+.+|. .
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------------~~~~~l~~h~------------~ 204 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------------NLLRELSGHT------------R 204 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------------hhhccccccc------------c
Confidence 478999999999999999999999999999854441 1224557788 8
Q ss_pred cceeEEEeecCCCceEEEeecCCeEEEEEccC-ceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
.|++++|+| ++.++++++.|++|++||+.. +.+...
T Consensus 205 ~v~~~~fs~--d~~~l~s~s~D~tiriwd~~~~~~~~~~----------------------------------------- 241 (456)
T KOG0266|consen 205 GVSDVAFSP--DGSYLLSGSDDKTLRIWDLKDDGRNLKT----------------------------------------- 241 (456)
T ss_pred ceeeeEECC--CCcEEEEecCCceEEEeeccCCCeEEEE-----------------------------------------
Confidence 899999955 778999999999999999943 333222
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
+.+|...|++++|+|+++.+++| .|++|++||++++....
T Consensus 242 -----------------------------------l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~---- 282 (456)
T KOG0266|consen 242 -----------------------------------LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR---- 282 (456)
T ss_pred -----------------------------------ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE----
Confidence 46999999999999999999999 79999999999855432
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 351 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 351 (513)
.+.+|...|++++|++++ ++|++++.|+.|++||+.++... ....+...+. .. +++++.|+|+
T Consensus 283 ----~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~~~---------~~-~~~~~~fsp~ 345 (456)
T KOG0266|consen 283 ----KLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKL--CLKLLSGAEN---------SA-PVTSVQFSPN 345 (456)
T ss_pred ----eeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCcee--eeecccCCCC---------CC-ceeEEEECCC
Confidence 568999999999999999 99999999999999999988732 1222332221 11 5999999999
Q ss_pred CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287 352 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 430 (513)
Q Consensus 352 ~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 430 (513)
+.+++++.. +.+++||+.. ...+..+.+|.... ..+++...++.+.++++|+.|+.|++|++.++
T Consensus 346 ~~~ll~~~~d~~~~~w~l~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~- 411 (456)
T KOG0266|consen 346 GKYLLSASLDRTLKLWDLRS-GKSVGTYTGHSNLV------------RCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG- 411 (456)
T ss_pred CcEEEEecCCCeEEEEEccC-CcceeeecccCCcc------------eeEecccccCCCCeEEEEeCCceEEEEeCCcc-
Confidence 999999886 8999999996 88888888887641 11335666889999999999999999999986
Q ss_pred ccceeecCC-CCceeEEEEcCCCCceeeec--CCCeEEE
Q 010287 431 AESTTLEAS-KNPMRRQVQTPSRPSRPLGS--LSGVVRR 466 (513)
Q Consensus 431 ~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~d~~i~~ 466 (513)
..+..+++| ...+..+.++|...++++++ .|+.+++
T Consensus 412 ~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~ 450 (456)
T KOG0266|consen 412 GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRL 450 (456)
T ss_pred chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEE
Confidence 566888999 88899999999999999998 6787887
No 32
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.7e-33 Score=223.19 Aligned_cols=287 Identities=15% Similarity=0.296 Sum_probs=222.3
Q ss_pred cccccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccc-cCCCCccccccc
Q 010287 31 EVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKS 108 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~ 108 (513)
..+|++.|..++|+|- |..||+++.|..|+||+...+. .+.+...+ .+|+
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------------s~~ck~vld~~hk-------- 61 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------------SWTCKTVLDDGHK-------- 61 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------------cEEEEEeccccch--------
Confidence 4478999999999998 9999999999999999976422 12233333 4677
Q ss_pred ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (513)
Q Consensus 109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 188 (513)
..|.+++|+| .+++|+++|.|.++.||.-..++...+..
T Consensus 62 ----rsVRsvAwsp--~g~~La~aSFD~t~~Iw~k~~~efecv~~----------------------------------- 100 (312)
T KOG0645|consen 62 ----RSVRSVAWSP--HGRYLASASFDATVVIWKKEDGEFECVAT----------------------------------- 100 (312)
T ss_pred ----heeeeeeecC--CCcEEEEeeccceEEEeecCCCceeEEee-----------------------------------
Confidence 8899999966 77899999999999999887665444311
Q ss_pred ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287 189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 267 (513)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~ 267 (513)
+.+|...|.|++|+++|.+|+++ .|+.|-+|...... .+
T Consensus 101 ---------------------------------------lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd-Ef 140 (312)
T KOG0645|consen 101 ---------------------------------------LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD-EF 140 (312)
T ss_pred ---------------------------------------eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC-cE
Confidence 56999999999999999999999 79999999988433 33
Q ss_pred eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287 268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 347 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 347 (513)
+.. ..+++|...|..+.|+|.. .+|++++.|.+|++|+-.... ......+ +.+|.+.|.+++
T Consensus 141 ec~----aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dd-dW~c~~t------------l~g~~~TVW~~~ 202 (312)
T KOG0645|consen 141 ECI----AVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDD-DWECVQT------------LDGHENTVWSLA 202 (312)
T ss_pred EEE----eeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCC-CeeEEEE------------ecCccceEEEEE
Confidence 221 2568899999999999998 899999999999999866321 1122333 455667899999
Q ss_pred EeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEec
Q 010287 348 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 426 (513)
Q Consensus 348 ~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 426 (513)
|+|.|..|+++++ ++++||-... .-+ ..|... +..+.|. ...|++++.|+.|++|.-
T Consensus 203 F~~~G~rl~s~sdD~tv~Iw~~~~-~~~----~~~sr~---------------~Y~v~W~--~~~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 203 FDNIGSRLVSCSDDGTVSIWRLYT-DLS----GMHSRA---------------LYDVPWD--NGVIASGGGDDAIRLFKE 260 (312)
T ss_pred ecCCCceEEEecCCcceEeeeecc-Ccc----hhcccc---------------eEeeeec--ccceEeccCCCEEEEEEe
Confidence 9999999999987 9999999653 110 012111 2367887 558999999999999976
Q ss_pred CCCC--cc----ceeecCCCCceeEEEEcCC-CCceeeecCCCeEEE
Q 010287 427 SEGS--AE----STTLEASKNPMRRQVQTPS-RPSRPLGSLSGVVRR 466 (513)
Q Consensus 427 ~~~~--~~----~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~ 466 (513)
.... .. ...-..|...|+++++.|. ...|++|+.||.+++
T Consensus 261 s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~ 307 (312)
T KOG0645|consen 261 SDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNF 307 (312)
T ss_pred cCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEE
Confidence 6431 11 1233478889999999995 778999999999998
No 33
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.3e-34 Score=251.63 Aligned_cols=289 Identities=17% Similarity=0.247 Sum_probs=235.4
Q ss_pred cccccccccccEEEEEEcC-CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccc
Q 010287 27 TAGEEVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (513)
Q Consensus 27 ~~~~~~~h~~~V~~v~~sp-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (513)
......+|+..|+++.|.| .+.+|++++.|+.|+||++-+.. .+.++|.+|.
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~----------------------~~lrtf~gH~----- 258 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR----------------------RCLRTFKGHR----- 258 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc----------------------ceehhhhcch-----
Confidence 4446779999999999999 79999999999999999987633 2668899999
Q ss_pred cccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCc
Q 010287 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (513)
Q Consensus 106 ~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 185 (513)
.+|.+++| +.++..|++++.|+.|++||+++|++...+...
T Consensus 259 -------k~Vrd~~~--s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~------------------------------ 299 (503)
T KOG0282|consen 259 -------KPVRDASF--NNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD------------------------------ 299 (503)
T ss_pred -------hhhhhhhc--cccCCeeeeeecceeeeeeccccceEEEEEecC------------------------------
Confidence 99999999 558899999999999999999999877653322
Q ss_pred cccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC-CEEEEE-cCCeEEEEEcCCC
Q 010287 186 GERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEIS 263 (513)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~vwd~~~~ 263 (513)
..+.|+.|+|++ +.|++| .|+.|+.||++++
T Consensus 300 -----------------------------------------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~ 332 (503)
T KOG0282|consen 300 -----------------------------------------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG 332 (503)
T ss_pred -----------------------------------------------CCceeeecCCCCCcEEEEecCCCcEEEEeccch
Confidence 237899999987 777787 7999999999987
Q ss_pred cceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccE
Q 010287 264 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 343 (513)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 343 (513)
+... .+..|-+.|..+.|-+++ ..+++++.|+.+++|+.+..-.... +.... .-.+
T Consensus 333 kvvq--------eYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~-i~~~~--------------~hsm 388 (503)
T KOG0282|consen 333 KVVQ--------EYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKN-IADPE--------------MHTM 388 (503)
T ss_pred HHHH--------HHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchh-hcchh--------------hccC
Confidence 7432 557788999999999999 9999999999999999887654211 11111 1247
Q ss_pred EEEEEeecCCEEEEEe-CCeEEEEEccCC--CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCc
Q 010287 344 SDIKFARNGRHILSRD-YMTLKLWDINMD--SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 420 (513)
Q Consensus 344 ~~i~~sp~~~~l~~~~-~~~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 420 (513)
.++..+|++.++++-+ +..|.+|.+... ....+.+.+|..... -..+.|||||++|++|+.||.
T Consensus 389 P~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGy-------------s~~v~fSpDG~~l~SGdsdG~ 455 (503)
T KOG0282|consen 389 PCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGY-------------SCQVDFSPDGRTLCSGDSDGK 455 (503)
T ss_pred cceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCc-------------eeeEEEcCCCCeEEeecCCcc
Confidence 7899999999999866 588999987632 223345666654311 126899999999999999999
Q ss_pred EEEEecCCCCccceeecCCCCceeEEEEcCCCC-ceeeecCCCeEEE
Q 010287 421 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR 466 (513)
Q Consensus 421 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~ 466 (513)
+.+||.++- ++...+++|..++..+.|.|... .+|+++.||.|++
T Consensus 456 v~~wdwkt~-kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Iki 501 (503)
T KOG0282|consen 456 VNFWDWKTT-KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKI 501 (503)
T ss_pred EEEeechhh-hhhhccccCCcceEEEEecCCCcceeEecccCceeEe
Confidence 999999987 66689999999999999999765 6899999999998
No 34
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.8e-33 Score=253.78 Aligned_cols=387 Identities=14% Similarity=0.183 Sum_probs=286.7
Q ss_pred cccccccccceecccccc-ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcc
Q 010287 12 AQPLEWKFSQVFGERTAG-EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (513)
Q Consensus 12 ~~~~~w~~~~~~~~~~~~-~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (513)
.....|++.. |+.... ........|+|+.-+|+..+||+|..||.|+||+.....
T Consensus 43 E~vn~WdlRt--ge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~---------------------- 98 (888)
T KOG0306|consen 43 EQVNIWDLRT--GEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEE---------------------- 98 (888)
T ss_pred ccEeEEeeec--chhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCc----------------------
Confidence 3566798876 433221 122334699999999999999999999999999987554
Q ss_pred eEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccC
Q 010287 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (513)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (513)
....|.||. .+|+.+.| +..|..|++|+.|+.|.+||+-..........+...
T Consensus 99 -~~~tfngHK------------~AVt~l~f--d~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~------------ 151 (888)
T KOG0306|consen 99 -ILITFNGHK------------AAVTTLKF--DKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDS------------ 151 (888)
T ss_pred -eeeeecccc------------cceEEEEE--cccCceEeecCCCccEEEEEeccceeeEEeecchHH------------
Confidence 335689999 99999999 668899999999999999999765543333322111
Q ss_pred cccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE
Q 010287 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 250 (513)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 250 (513)
.+...|..+ .++.++.+.++.+++||+..+. |..+ ...|.+.++++++.+ +.++++
T Consensus 152 ---iT~~~F~~~------------~~~lvS~sKDs~iK~WdL~tqh------Cf~T-hvd~r~Eiw~l~~~~--~~lvt~ 207 (888)
T KOG0306|consen 152 ---ITQALFLNG------------DSFLVSVSKDSMIKFWDLETQH------CFET-HVDHRGEIWALVLDE--KLLVTA 207 (888)
T ss_pred ---HhHHhccCC------------CeEEEEeccCceEEEEecccce------eeeE-EecccceEEEEEEec--ceEEEE
Confidence 111122222 2345888999999999997743 3333 357889999999988 566665
Q ss_pred -cCCeEEEEEcCCCc-----------------------------------------------------------------
Q 010287 251 -DDLRINLWNLEISN----------------------------------------------------------------- 264 (513)
Q Consensus 251 -~d~~i~vwd~~~~~----------------------------------------------------------------- 264 (513)
.|+.+++|++....
T Consensus 208 ~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~ 287 (888)
T KOG0306|consen 208 GTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKL 287 (888)
T ss_pred ecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHH
Confidence 79999999982100
Q ss_pred ----------------------------------------------ce----------eeec--c--cCc---------c
Q 010287 265 ----------------------------------------------QS----------FNIV--D--VKP---------A 275 (513)
Q Consensus 265 ----------------------------------------------~~----------~~~~--~--~~~---------~ 275 (513)
.. ...+ + .++ .
T Consensus 288 k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i 367 (888)
T KOG0306|consen 288 KRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNI 367 (888)
T ss_pred HHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCcccccccee
Confidence 00 0000 0 001 2
Q ss_pred ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEE
Q 010287 276 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 355 (513)
Q Consensus 276 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l 355 (513)
.+.+|...|.+++++.+. .++..+..+.+++|+..+.+. ++++.. +.+.+..|-|.++++
T Consensus 368 ~~~GHR~dVRsl~vS~d~--~~~~Sga~~SikiWn~~t~kc----iRTi~~--------------~y~l~~~Fvpgd~~I 427 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDS--ILLASGAGESIKIWNRDTLKC----IRTITC--------------GYILASKFVPGDRYI 427 (888)
T ss_pred eeccchhheeEEEeecCc--eeeeecCCCcEEEEEccCcce----eEEecc--------------ccEEEEEecCCCceE
Confidence 346788899999999885 444455678999999988776 555554 468999999999999
Q ss_pred EEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC----
Q 010287 356 LSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS---- 430 (513)
Q Consensus 356 ~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---- 430 (513)
+.|.. |.+.+||+.+ ...+.+.+.|.+. +++++.+||++.+++|+.|.+|++||+.--.
T Consensus 428 v~G~k~Gel~vfdlaS-~~l~Eti~AHdga---------------IWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~g 491 (888)
T KOG0306|consen 428 VLGTKNGELQVFDLAS-ASLVETIRAHDGA---------------IWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPG 491 (888)
T ss_pred EEeccCCceEEEEeeh-hhhhhhhhccccc---------------eeeeeecCCCCceEEecCCcEEEEEeEEEEeccCc
Confidence 99998 9999999997 8888999999987 6799999999999999999999999975321
Q ss_pred -c-cceeec-----CCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEE
Q 010287 431 -A-ESTTLE-----ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 503 (513)
Q Consensus 431 -~-~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~ 503 (513)
+ ....++ .-.+.|.++.+|||+++||.+--|.+++++--.. ..+-...++|.-||.+|..|||+++++++
T Consensus 492 t~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt---lKFflsLYGHkLPV~smDIS~DSklivTg 568 (888)
T KOG0306|consen 492 TQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT---LKFFLSLYGHKLPVLSMDISPDSKLIVTG 568 (888)
T ss_pred ccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc---eeeeeeecccccceeEEeccCCcCeEEec
Confidence 1 111111 2246788999999999999999999999922221 22445677899999999999999999988
Q ss_pred c-CCcEEEEe
Q 010287 504 A-SNSLYMYY 512 (513)
Q Consensus 504 ~-~~~~~i~~ 512 (513)
+ |.++.||-
T Consensus 569 SADKnVKiWG 578 (888)
T KOG0306|consen 569 SADKNVKIWG 578 (888)
T ss_pred cCCCceEEec
Confidence 8 88899983
No 35
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.6e-35 Score=240.06 Aligned_cols=294 Identities=15% Similarity=0.251 Sum_probs=240.6
Q ss_pred cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
.++...-+.|..|||||+||++|+.||.|.+||..+++.. ..| .|.-...|.-++
T Consensus 209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlr----KDL-----------kYQAqd~fMMmd---------- 263 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLR----KDL-----------KYQAQDNFMMMD---------- 263 (508)
T ss_pred ecccccchhheeeCCCCceEeeccccceeeeehhccchhh----hhh-----------hhhhhcceeecc----------
Confidence 3455678899999999999999999999999999888752 221 122222344455
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
++|.|+.| +.|..++++|+.||.|++|.+++|.|...
T Consensus 264 --~aVlci~F--SRDsEMlAsGsqDGkIKvWri~tG~ClRr--------------------------------------- 300 (508)
T KOG0275|consen 264 --DAVLCISF--SRDSEMLASGSQDGKIKVWRIETGQCLRR--------------------------------------- 300 (508)
T ss_pred --cceEEEee--cccHHHhhccCcCCcEEEEEEecchHHHH---------------------------------------
Confidence 89999999 66888999999999999999999876543
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 269 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~ 269 (513)
|-.+|...|+|+.|+.|+..++++ .|.++++.-+..++.+.
T Consensus 301 ------------------------------------FdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK-- 342 (508)
T KOG0275|consen 301 ------------------------------------FDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK-- 342 (508)
T ss_pred ------------------------------------hhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHH--
Confidence 235888999999999999999998 69999999999877553
Q ss_pred cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287 270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 349 (513)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 349 (513)
.+.+|.+.|+...|.++| ..+++++.||+|++|+..+.++ ..+|+... ...+|.++..-
T Consensus 343 ------EfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC----~~Tfk~~~----------~d~~vnsv~~~ 401 (508)
T KOG0275|consen 343 ------EFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTEC----LSTFKPLG----------TDYPVNSVILL 401 (508)
T ss_pred ------HhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchhh----hhhccCCC----------CcccceeEEEc
Confidence 679999999999999999 9999999999999999998876 34444322 12578888888
Q ss_pred e-cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287 350 R-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 427 (513)
Q Consensus 350 p-~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 427 (513)
| +-+.++++.. .+|+|.++. ++.++.+......... ..+++.||.|.++++.+.|+.++.|...
T Consensus 402 PKnpeh~iVCNrsntv~imn~q--GQvVrsfsSGkREgGd------------Fi~~~lSpkGewiYcigED~vlYCF~~~ 467 (508)
T KOG0275|consen 402 PKNPEHFIVCNRSNTVYIMNMQ--GQVVRSFSSGKREGGD------------FINAILSPKGEWIYCIGEDGVLYCFSVL 467 (508)
T ss_pred CCCCceEEEEcCCCeEEEEecc--ceEEeeeccCCccCCc------------eEEEEecCCCcEEEEEccCcEEEEEEee
Confidence 8 5567777776 999999987 8888888654332221 2378999999999999999999999999
Q ss_pred CCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
++ .+..++..|...+-.++-+|..+.||+-++||.+++
T Consensus 468 sG-~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKL 505 (508)
T KOG0275|consen 468 SG-KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKL 505 (508)
T ss_pred cC-ceeeeeecccccccccccCcccchhhhhcccchhhh
Confidence 88 555788899888889999999999999999999888
No 36
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.9e-34 Score=239.34 Aligned_cols=278 Identities=17% Similarity=0.240 Sum_probs=233.4
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
.+|+.+-|+| +-...++++.|++|++||..++++...
T Consensus 109 ~~vt~v~~hp--~~~~v~~as~d~tikv~D~~tg~~e~~----------------------------------------- 145 (406)
T KOG0295|consen 109 SSVTRVIFHP--SEALVVSASEDATIKVFDTETGELERS----------------------------------------- 145 (406)
T ss_pred cceeeeeecc--CceEEEEecCCceEEEEEccchhhhhh-----------------------------------------
Confidence 8899999987 444788889999999999999975321
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
+.+|.+.+..++|+..|++++++ .|-.+++||..+...+.+
T Consensus 146 -----------------------------------LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~k--- 187 (406)
T KOG0295|consen 146 -----------------------------------LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIK--- 187 (406)
T ss_pred -----------------------------------hhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHH---
Confidence 47898999999999999999999 688899999986544433
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 351 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 351 (513)
.+.+|...|.++.|-|.+ .++++++.|.+|+.|++.++.. +++| .+|...|..++.+.|
T Consensus 188 ----s~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~c----v~t~------------~~h~ewvr~v~v~~D 246 (406)
T KOG0295|consen 188 ----SLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYC----VKTF------------PGHSEWVRMVRVNQD 246 (406)
T ss_pred ----HhcCcccceeeEEEEecC-CeeeecccccceeEEeccccee----EEec------------cCchHhEEEEEecCC
Confidence 567899999999999999 9999999999999999999876 4454 455578999999999
Q ss_pred CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC---------------CCEEEEE
Q 010287 352 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD---------------GGRVATG 415 (513)
Q Consensus 352 ~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------------~~~l~~~ 415 (513)
|.++++++. .+|++|-+.+ +++...++.|+..+. +++|.|. ++++.++
T Consensus 247 Gti~As~s~dqtl~vW~~~t-~~~k~~lR~hEh~vE---------------ci~wap~~~~~~i~~at~~~~~~~~l~s~ 310 (406)
T KOG0295|consen 247 GTIIASCSNDQTLRVWVVAT-KQCKAELREHEHPVE---------------CIAWAPESSYPSISEATGSTNGGQVLGSG 310 (406)
T ss_pred eeEEEecCCCceEEEEEecc-chhhhhhhccccceE---------------EEEecccccCcchhhccCCCCCccEEEee
Confidence 999999875 9999999997 777888888887754 4444432 3689999
Q ss_pred eCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeC
Q 010287 416 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP 495 (513)
Q Consensus 416 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 495 (513)
+.|++|++||+.++ ..+.++.+|.+.|+.++|+|.|+||+++..|+++++ |+....+.......|..-++++.|+.
T Consensus 311 SrDktIk~wdv~tg-~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrv---wdl~~~~cmk~~~ah~hfvt~lDfh~ 386 (406)
T KOG0295|consen 311 SRDKTIKIWDVSTG-MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRV---WDLKNLQCMKTLEAHEHFVTSLDFHK 386 (406)
T ss_pred cccceEEEEeccCC-eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEE---EEeccceeeeccCCCcceeEEEecCC
Confidence 99999999999999 555899999999999999999999999999999999 44443233333346888999999999
Q ss_pred CCCEEEEEc-CCcEEEEe
Q 010287 496 SENSIACAA-SNSLYMYY 512 (513)
Q Consensus 496 ~~~~la~~~-~~~~~i~~ 512 (513)
+..++++|+ +..+.+|-
T Consensus 387 ~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 387 TAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CCceEEeccccceeeeee
Confidence 999999999 66777763
No 37
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.7e-32 Score=218.66 Aligned_cols=292 Identities=15% Similarity=0.263 Sum_probs=223.4
Q ss_pred EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (513)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (513)
....+++|. +++..++|+|-. |..|++++.|+.||+|+...+....
T Consensus 6 ~~~~~~gh~------------~r~W~~awhp~~-g~ilAscg~Dk~vriw~~~~~~s~~--------------------- 51 (312)
T KOG0645|consen 6 LEQKLSGHK------------DRVWSVAWHPGK-GVILASCGTDKAVRIWSTSSGDSWT--------------------- 51 (312)
T ss_pred eEEeecCCC------------CcEEEEEeccCC-ceEEEeecCCceEEEEecCCCCcEE---------------------
Confidence 345678888 899999998732 6689999999999999998532110
Q ss_pred ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-
Q 010287 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 250 (513)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~- 250 (513)
++...-.+|+..|++++|+|.|++|+++
T Consensus 52 ---------------------------------------------------ck~vld~~hkrsVRsvAwsp~g~~La~aS 80 (312)
T KOG0645|consen 52 ---------------------------------------------------CKTVLDDGHKRSVRSVAWSPHGRYLASAS 80 (312)
T ss_pred ---------------------------------------------------EEEeccccchheeeeeeecCCCcEEEEee
Confidence 1111125788889999999999999999
Q ss_pred cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCC
Q 010287 251 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 330 (513)
Q Consensus 251 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 330 (513)
.|.++.||.-..+.-.. + ..+++|...|.|++|+++| ++||+++.|+.|-+|.+...... +
T Consensus 81 FD~t~~Iw~k~~~efec--v----~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEf-------e----- 141 (312)
T KOG0645|consen 81 FDATVVIWKKEDGEFEC--V----ATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEF-------E----- 141 (312)
T ss_pred ccceEEEeecCCCceeE--E----eeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcE-------E-----
Confidence 59999999866433221 1 2679999999999999999 99999999999999998744321 1
Q ss_pred CCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccC--CCCCeeeeecccccccccccccccCCccceeeEEEeC
Q 010287 331 GTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM--DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 407 (513)
Q Consensus 331 ~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 407 (513)
...++.+|...|..+.|+|...+|++++. .+|++|+-.. .-.+.+++.+|... |++++|++
T Consensus 142 -c~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~T---------------VW~~~F~~ 205 (312)
T KOG0645|consen 142 -CIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENT---------------VWSLAFDN 205 (312)
T ss_pred -EEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccce---------------EEEEEecC
Confidence 11236778889999999999999999886 9999998763 12457788888764 67999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCC-CCCcc--ccCC-cccc
Q 010287 408 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA-DNSAL--DANG-NAFD 483 (513)
Q Consensus 408 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~--~~~~-~~~~ 483 (513)
.|..|+++++|++++||...+. ....|..+++.+.|. ...||+++.|+.|++.+.. .+... .+.. ....
T Consensus 206 ~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~a 278 (312)
T KOG0645|consen 206 IGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGA 278 (312)
T ss_pred CCceEEEecCCcceEeeeeccC-----cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcc
Confidence 9999999999999999986633 223467788889998 6789999999999993222 22111 1111 2335
Q ss_pred ccCCeeEEEEeCC-CCEEEEEcCCcEEE
Q 010287 484 FSMKLLHLAWHPS-ENSIACAASNSLYM 510 (513)
Q Consensus 484 ~~~~i~~~~~sp~-~~~la~~~~~~~~i 510 (513)
|+..|++++|.|. .++|+++++|+++-
T Consensus 279 He~dVNsV~w~p~~~~~L~s~~DDG~v~ 306 (312)
T KOG0645|consen 279 HEVDVNSVQWNPKVSNRLASGGDDGIVN 306 (312)
T ss_pred cccccceEEEcCCCCCceeecCCCceEE
Confidence 8889999999995 77888888666543
No 38
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.4e-33 Score=258.50 Aligned_cols=300 Identities=16% Similarity=0.221 Sum_probs=230.4
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
..++|..| +.++.++|.|-.|-.|++|.+...+++.......-... +
T Consensus 379 ~~v~ca~f--SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~---------------------d---------- 425 (707)
T KOG0263|consen 379 QGVTCAEF--SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNI---------------------D---------- 425 (707)
T ss_pred CcceeEee--cCCcchhhccccccEEEEEecchhhhccccchhhhccc---------------------c----------
Confidence 67899999 55888999999999999999987654443221110000 0
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
....+-...+.|... ......+.+|.++|..+.|+|+.++|+++ .|+++++|.+.+....+
T Consensus 426 -------~~sad~~~~~~D~~~-------~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---- 487 (707)
T KOG0263|consen 426 -------TESADVDVDMLDDDS-------SGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---- 487 (707)
T ss_pred -------ccccchhhhhccccC-------CceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE----
Confidence 000000011111111 11112268999999999999999999999 69999999999776554
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 351 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 351 (513)
...+|..+|.++.|+|.| .+||+++.|++-++|....... .+ ++.+|-+.|.|+.|+|+
T Consensus 488 ----~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~P----lR------------ifaghlsDV~cv~FHPN 546 (707)
T KOG0263|consen 488 ----IYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKP----LR------------IFAGHLSDVDCVSFHPN 546 (707)
T ss_pred ----EecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCc----hh------------hhcccccccceEEECCc
Confidence 457999999999999999 9999999999999999766433 33 35667789999999999
Q ss_pred CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287 352 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 430 (513)
Q Consensus 352 ~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 430 (513)
..|+++|+. .+|++||+.+ +..++.+.+|... |++++|||+|++|++|+.||.|.+||+.++
T Consensus 547 s~Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~---------------V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~- 609 (707)
T KOG0263|consen 547 SNYVATGSSDRTVRLWDVST-GNSVRIFTGHKGP---------------VTALAFSPCGRYLASGDEDGLIKIWDLANG- 609 (707)
T ss_pred ccccccCCCCceEEEEEcCC-CcEEEEecCCCCc---------------eEEEEEcCCCceEeecccCCcEEEEEcCCC-
Confidence 999999875 9999999997 9999999999887 569999999999999999999999999987
Q ss_pred ccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCc------------------------cccCCccccccC
Q 010287 431 AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSA------------------------LDANGNAFDFSM 486 (513)
Q Consensus 431 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~------------------------~~~~~~~~~~~~ 486 (513)
.+...+.+|.+.+.++.|+.+|..||+|+.|..|++ |+... ....+....-..
T Consensus 610 ~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~l---WD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~t 686 (707)
T KOG0263|consen 610 SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRL---WDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNT 686 (707)
T ss_pred cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEE---EEchhhcccccccccccccccccccCCCCcceeeeeeecCc
Confidence 566888999999999999999999999999999999 21110 011222223456
Q ss_pred CeeEEEEeCCCCEEEEEc
Q 010287 487 KLLHLAWHPSENSIACAA 504 (513)
Q Consensus 487 ~i~~~~~sp~~~~la~~~ 504 (513)
+|..+.|.-..-.|++|.
T Consensus 687 pv~~l~FtrrNl~L~~g~ 704 (707)
T KOG0263|consen 687 PVVGLHFTRRNLLLAVGP 704 (707)
T ss_pred eEEEEEEeccceeEEecc
Confidence 788888887776666553
No 39
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.1e-33 Score=218.76 Aligned_cols=276 Identities=18% Similarity=0.265 Sum_probs=227.9
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
++|.+++| +.+|++.++++.|++|++|+...+.++..
T Consensus 18 gaV~avry--N~dGnY~ltcGsdrtvrLWNp~rg~likt----------------------------------------- 54 (307)
T KOG0316|consen 18 GAVRAVRY--NVDGNYCLTCGSDRTVRLWNPLRGALIKT----------------------------------------- 54 (307)
T ss_pred cceEEEEE--ccCCCEEEEcCCCceEEeecccccceeee-----------------------------------------
Confidence 89999999 66899999999999999999988876543
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
..+|...|..++.+.|...|++| .|..+.+||.++++...
T Consensus 55 -----------------------------------YsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---- 95 (307)
T KOG0316|consen 55 -----------------------------------YSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDR---- 95 (307)
T ss_pred -----------------------------------ecCCCceeeeccccccccccccCCCCceEEEEEcccCeeee----
Confidence 25777789999999999999998 79999999999987653
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 351 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 351 (513)
.+.+|...|+.+.|+.+. ..+++|+.|..+++||.|+... +++..+.. ....|.++..+
T Consensus 96 ----r~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~--ePiQilde------------a~D~V~Si~v~-- 154 (307)
T KOG0316|consen 96 ----RFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSF--EPIQILDE------------AKDGVSSIDVA-- 154 (307)
T ss_pred ----ecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCC--Cccchhhh------------hcCceeEEEec--
Confidence 678999999999999998 9999999999999999998653 22444433 33678888876
Q ss_pred CCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287 352 GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 430 (513)
Q Consensus 352 ~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 430 (513)
+..|++|+ ||+++.||++. +.....+.+|. |++++|++|++.++.++.|+++++.|-+++
T Consensus 155 ~heIvaGS~DGtvRtydiR~-G~l~sDy~g~p-----------------it~vs~s~d~nc~La~~l~stlrLlDk~tG- 215 (307)
T KOG0316|consen 155 EHEIVAGSVDGTVRTYDIRK-GTLSSDYFGHP-----------------ITSVSFSKDGNCSLASSLDSTLRLLDKETG- 215 (307)
T ss_pred ccEEEeeccCCcEEEEEeec-ceeehhhcCCc-----------------ceeEEecCCCCEEEEeeccceeeecccchh-
Confidence 67788877 59999999996 77666666655 459999999999999999999999999988
Q ss_pred ccceeecCCCCceeE--EEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCC-eeEEEEeCCCCEEEEEcCCc
Q 010287 431 AESTTLEASKNPMRR--QVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMK-LLHLAWHPSENSIACAASNS 507 (513)
Q Consensus 431 ~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~sp~~~~la~~~~~~ 507 (513)
+++..+++|.+.-.. .+++.....+++|++||.|.+ |.+....+.....-++.. |.+++++|....+.++...+
T Consensus 216 klL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~---wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~ 292 (307)
T KOG0316|consen 216 KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYF---WDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG 292 (307)
T ss_pred HHHHHhcccccceeeeeeeecccceeEEeccCCceEEE---EEeccceeeeeeccCCceeEEeeecccCccceeEecCCc
Confidence 677899999877654 567788889999999999999 554432233333334555 89999999999999999988
Q ss_pred EEEEeC
Q 010287 508 LYMYYA 513 (513)
Q Consensus 508 ~~i~~~ 513 (513)
...|.+
T Consensus 293 ~~~~~~ 298 (307)
T KOG0316|consen 293 DLFWYQ 298 (307)
T ss_pred eeceee
Confidence 888863
No 40
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.5e-34 Score=228.99 Aligned_cols=281 Identities=14% Similarity=0.204 Sum_probs=238.2
Q ss_pred ccccccccEEEEEEcC---CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccc
Q 010287 30 EEVQEVDIISAIEFDK---SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp---~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (513)
.=.+|+.+|-.++||| +|-+|++++.||.-.+-+-.++.. ..+|.||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw-----------------------igtfeghk------ 59 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW-----------------------IGTFEGHK------ 59 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc-----------------------EEeeeccC------
Confidence 3458999999999986 688999999999888877666664 36789999
Q ss_pred ccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (513)
Q Consensus 107 ~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 186 (513)
++|..... +.+...-++++.|=+-++||.-+|.....
T Consensus 60 ------gavw~~~l--~~na~~aasaaadftakvw~a~tgdelhs----------------------------------- 96 (334)
T KOG0278|consen 60 ------GAVWSATL--NKNATRAASAAADFTAKVWDAVTGDELHS----------------------------------- 96 (334)
T ss_pred ------cceeeeec--Cchhhhhhhhcccchhhhhhhhhhhhhhh-----------------------------------
Confidence 88998888 44656777889999999999988764332
Q ss_pred ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcc
Q 010287 187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 265 (513)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~ 265 (513)
..|...|.+++|+.|.++|++| .+..+++||++..+.
T Consensus 97 ------------------------------------------f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A 134 (334)
T KOG0278|consen 97 ------------------------------------------FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA 134 (334)
T ss_pred ------------------------------------------hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCC
Confidence 3566779999999999999998 699999999987665
Q ss_pred eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287 266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 345 (513)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 345 (513)
.. ..+.+|.+.|..+.|...+ +.|++++.|+.||+||.+++.. +..+... .+|++
T Consensus 135 pp-------~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~----v~sL~~~-------------s~VtS 189 (334)
T KOG0278|consen 135 PP-------KEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTE----VQSLEFN-------------SPVTS 189 (334)
T ss_pred Cc-------hhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcE----EEEEecC-------------CCCcc
Confidence 43 4778999999999999887 8899999999999999999886 3333332 57999
Q ss_pred EEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEe
Q 010287 346 IKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 425 (513)
Q Consensus 346 i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 425 (513)
+.++++|++|.++..+.|.+||..+ -.+++.+..+.. |.+..++|+...+++|+.|..++.||
T Consensus 190 lEvs~dG~ilTia~gssV~Fwdaks-f~~lKs~k~P~n----------------V~SASL~P~k~~fVaGged~~~~kfD 252 (334)
T KOG0278|consen 190 LEVSQDGRILTIAYGSSVKFWDAKS-FGLLKSYKMPCN----------------VESASLHPKKEFFVAGGEDFKVYKFD 252 (334)
T ss_pred eeeccCCCEEEEecCceeEEecccc-ccceeeccCccc----------------cccccccCCCceEEecCcceEEEEEe
Confidence 9999999999998889999999997 777777765544 34788999999999999999999999
Q ss_pred cCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 426 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 426 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
..++..+..-.++|.+||.++.|+|+|...|+||.||+|+|
T Consensus 253 y~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 253 YNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRL 293 (334)
T ss_pred ccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEE
Confidence 99996554446999999999999999999999999999999
No 41
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-32 Score=230.58 Aligned_cols=294 Identities=14% Similarity=0.257 Sum_probs=242.6
Q ss_pred cCCCcceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCC
Q 010287 85 SRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGN 164 (513)
Q Consensus 85 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 164 (513)
.||..+++...+++|. +.|.|+++-| .+..|++++.|++|+|||+.+++++..
T Consensus 136 eWHapwKl~rVi~gHl------------gWVr~vavdP--~n~wf~tgs~DrtikIwDlatg~Lklt------------- 188 (460)
T KOG0285|consen 136 EWHAPWKLYRVISGHL------------GWVRSVAVDP--GNEWFATGSADRTIKIWDLATGQLKLT------------- 188 (460)
T ss_pred cccCcceehhhhhhcc------------ceEEEEeeCC--CceeEEecCCCceeEEEEcccCeEEEe-------------
Confidence 4788899999999999 9999999965 567999999999999999999986653
Q ss_pred CCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC
Q 010287 165 GPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG 244 (513)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 244 (513)
+.+|...|..+++++-.
T Consensus 189 ---------------------------------------------------------------ltGhi~~vr~vavS~rH 205 (460)
T KOG0285|consen 189 ---------------------------------------------------------------LTGHIETVRGVAVSKRH 205 (460)
T ss_pred ---------------------------------------------------------------ecchhheeeeeeecccC
Confidence 35777889999999999
Q ss_pred CEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccccee
Q 010287 245 ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 323 (513)
Q Consensus 245 ~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 323 (513)
.+++++ .|+.|+.||++..+.. +.+.+|-+.|.|++.+|.- ..|++|+.|..+++||+|+... +.+
T Consensus 206 pYlFs~gedk~VKCwDLe~nkvI--------R~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~----V~~ 272 (460)
T KOG0285|consen 206 PYLFSAGEDKQVKCWDLEYNKVI--------RHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRAS----VHV 272 (460)
T ss_pred ceEEEecCCCeeEEEechhhhhH--------HHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccce----EEE
Confidence 999998 7999999999965533 2568899999999999998 8999999999999999998765 333
Q ss_pred eccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceee
Q 010287 324 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 402 (513)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (513)
+.+|..+|.++.+.|-...+++|+ |++|++||++. ++...++..|... +.+
T Consensus 273 ------------l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a-gkt~~tlt~hkks---------------vra 324 (460)
T KOG0285|consen 273 ------------LSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA-GKTMITLTHHKKS---------------VRA 324 (460)
T ss_pred ------------ecCCCCcceeEEeecCCCceEEecCCceEEEeeecc-CceeEeeecccce---------------eeE
Confidence 566778999999999777788877 59999999996 8888888888765 448
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE---ecCCCCCccc--c
Q 010287 403 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR---VKGADNSALD--A 477 (513)
Q Consensus 403 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~---~~~~~~~~~~--~ 477 (513)
++.+|....+++++.| .|+-|++..+. ....+.+|...++.+....|+ ++++|+.+|.+-+ ..+......+ .
T Consensus 325 l~lhP~e~~fASas~d-nik~w~~p~g~-f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~v 401 (460)
T KOG0285|consen 325 LCLHPKENLFASASPD-NIKQWKLPEGE-FLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIV 401 (460)
T ss_pred EecCCchhhhhccCCc-cceeccCCccc-hhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccc
Confidence 9999999999999987 48999999884 445699999999999988764 6778888999888 3333333211 1
Q ss_pred CCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 478 NGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 478 ~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
-...++-+..|.+.+|...+..|+++. +.+|.+|.
T Consensus 402 qpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 402 QPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred cCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 122334567899999999999999775 88888874
No 42
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.2e-32 Score=225.26 Aligned_cols=286 Identities=17% Similarity=0.270 Sum_probs=233.2
Q ss_pred EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (513)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (513)
+...+.+|+ +.|+.+.|+| +|..|++++.|..|.+|++.... ....
T Consensus 39 p~m~l~gh~------------geI~~~~F~P--~gs~~aSgG~Dr~I~LWnv~gdc-eN~~------------------- 84 (338)
T KOG0265|consen 39 PIMLLPGHK------------GEIYTIKFHP--DGSCFASGGSDRAIVLWNVYGDC-ENFW------------------- 84 (338)
T ss_pred hhhhcCCCc------------ceEEEEEECC--CCCeEeecCCcceEEEEeccccc-ccee-------------------
Confidence 445578888 7899999976 88899999999999999976432 1110
Q ss_pred ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-
Q 010287 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 250 (513)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~- 250 (513)
.+++|.+.|..+.|.+|+..++++
T Consensus 85 -------------------------------------------------------~lkgHsgAVM~l~~~~d~s~i~S~g 109 (338)
T KOG0265|consen 85 -------------------------------------------------------VLKGHSGAVMELHGMRDGSHILSCG 109 (338)
T ss_pred -------------------------------------------------------eeccccceeEeeeeccCCCEEEEec
Confidence 146899999999999999999998
Q ss_pred cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCC
Q 010287 251 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 330 (513)
Q Consensus 251 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 330 (513)
.|.+++.||.++++... .+++|..-|+.+.-...|+.++.+++.|+++++||+|+... +++++..
T Consensus 110 tDk~v~~wD~~tG~~~r--------k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~----~~t~~~k--- 174 (338)
T KOG0265|consen 110 TDKTVRGWDAETGKRIR--------KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA----IKTFENK--- 174 (338)
T ss_pred CCceEEEEecccceeee--------hhccccceeeecCccccCCeEEEecCCCceEEEEeecccch----hhccccc---
Confidence 79999999999988664 56889999999997777878899999999999999998766 3444332
Q ss_pred CCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC
Q 010287 331 GTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 409 (513)
Q Consensus 331 ~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 409 (513)
..++++.|..++..+.+|. |+.|++||++. ......+.+|... |+.+..+|+|
T Consensus 175 ----------yqltAv~f~d~s~qv~sggIdn~ikvWd~r~-~d~~~~lsGh~Dt---------------It~lsls~~g 228 (338)
T KOG0265|consen 175 ----------YQLTAVGFKDTSDQVISGGIDNDIKVWDLRK-NDGLYTLSGHADT---------------ITGLSLSRYG 228 (338)
T ss_pred ----------eeEEEEEecccccceeeccccCceeeecccc-CcceEEeecccCc---------------eeeEEeccCC
Confidence 4699999999888888876 69999999996 8899999999987 6699999999
Q ss_pred CEEEEEeCCCcEEEEecCCCC---ccceeecCCCC----ceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccc
Q 010287 410 GRVATGSYSNLFRVFGCSEGS---AESTTLEASKN----PMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAF 482 (513)
Q Consensus 410 ~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~ 482 (513)
.++.+-+.|.++++||++..- ..+..+.+|.- ....+.|+|++.++..|+.|+.+.+ |+.....+....-
T Consensus 229 s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyv---wd~~~r~~lyklp 305 (338)
T KOG0265|consen 229 SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYV---WDTTSRRILYKLP 305 (338)
T ss_pred CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEE---eecccccEEEEcC
Confidence 999999999999999987642 22345555432 2346789999999999999999999 5544334455566
Q ss_pred cccCCeeEEEEeCCCCEEEEEc-CCcEEE
Q 010287 483 DFSMKLLHLAWHPSENSIACAA-SNSLYM 510 (513)
Q Consensus 483 ~~~~~i~~~~~sp~~~~la~~~-~~~~~i 510 (513)
+|.+.|++++|+|...+|.+++ +..+++
T Consensus 306 Gh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 306 GHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 7999999999999999998766 555543
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.2e-31 Score=243.88 Aligned_cols=281 Identities=23% Similarity=0.385 Sum_probs=228.3
Q ss_pred cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
..+|.++|++++|+|++++|++++.+|.|++|++.+.+. ...+..|.
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~-----------------------~~~~~~~~---------- 51 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-----------------------LRTLKGHT---------- 51 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc-----------------------EEEEecCC----------
Confidence 347999999999999999999999999999999876542 13455666
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
..+..+.|+| ++..+++++.|+.|++|++.+++....
T Consensus 52 --~~i~~~~~~~--~~~~l~~~~~~~~i~i~~~~~~~~~~~--------------------------------------- 88 (289)
T cd00200 52 --GPVRDVAASA--DGTYLASGSSDKTIRLWDLETGECVRT--------------------------------------- 88 (289)
T ss_pred --cceeEEEECC--CCCEEEEEcCCCeEEEEEcCcccceEE---------------------------------------
Confidence 7788999965 567899999999999999987532211
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEc-CCeEEEEEcCCCcceeee
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD-DLRINLWNLEISNQSFNI 269 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-d~~i~vwd~~~~~~~~~~ 269 (513)
+..|...+.++.|++++++++++. ++.|.+||+++.+...
T Consensus 89 -------------------------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-- 129 (289)
T cd00200 89 -------------------------------------LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT-- 129 (289)
T ss_pred -------------------------------------EeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE--
Confidence 235566799999999988888885 9999999998655433
Q ss_pred cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287 270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 349 (513)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 349 (513)
.+..|...+.++.|+|++ .++++++.|+.|++||+++++. ...+. .|...+.++.|+
T Consensus 130 ------~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~----~~~~~------------~~~~~i~~~~~~ 186 (289)
T cd00200 130 ------TLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKC----VATLT------------GHTGEVNSVAFS 186 (289)
T ss_pred ------EeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEcccccc----ceeEe------------cCccccceEEEC
Confidence 345688899999999997 8888888899999999986654 22222 344679999999
Q ss_pred ecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287 350 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 428 (513)
Q Consensus 350 p~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 428 (513)
|+++.+++++ ++.|++||++. ++.+..+..+... +.+++|+|++.++++++.||.|++|++.+
T Consensus 187 ~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 187 PDGEKLLSSSSDGTIKLWDLST-GKCLGTLRGHENG---------------VNSVAFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred CCcCEEEEecCCCcEEEEECCC-CceecchhhcCCc---------------eEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 9998888876 59999999986 6666666555543 45899999998998888899999999987
Q ss_pred CCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 429 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 429 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
+ .....+..|...+..+.++++++++++++.|+.+++
T Consensus 251 ~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 287 (289)
T cd00200 251 G-ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI 287 (289)
T ss_pred c-eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEe
Confidence 6 444667788899999999999999999999999987
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-32 Score=251.53 Aligned_cols=294 Identities=16% Similarity=0.216 Sum_probs=239.4
Q ss_pred ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (513)
Q Consensus 34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (513)
.+..|..++|+|...+|+++-..|.|++||..-+.. ...|..|+ +
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tl-----------------------i~rFdeHd------------G 52 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL-----------------------IDRFDEHD------------G 52 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhH-----------------------HhhhhccC------------C
Confidence 357899999999999999999999999999776553 36688898 9
Q ss_pred cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (513)
Q Consensus 114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (513)
+|..++|+|. ..+|++|+.|..|+||+..+.++...
T Consensus 53 pVRgv~FH~~--qplFVSGGDDykIkVWnYk~rrclft------------------------------------------ 88 (1202)
T KOG0292|consen 53 PVRGVDFHPT--QPLFVSGGDDYKIKVWNYKTRRCLFT------------------------------------------ 88 (1202)
T ss_pred ccceeeecCC--CCeEEecCCccEEEEEecccceehhh------------------------------------------
Confidence 9999999874 45999999999999999998876543
Q ss_pred CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc
Q 010287 194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 272 (513)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~ 272 (513)
+.+|-+-|+.+.|++.-.+|+++ +|.+|+||+..+.+.. .
T Consensus 89 ----------------------------------L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~i-a---- 129 (1202)
T KOG0292|consen 89 ----------------------------------LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCI-A---- 129 (1202)
T ss_pred ----------------------------------hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceE-E----
Confidence 46888999999999999999999 7999999999866544 3
Q ss_pred CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccce-------e------eccccCCCCccccccc
Q 010287 273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK-------L------FEEQEAPGTRSFFTEI 339 (513)
Q Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~------~~~~~~~~~~~~~~~~ 339 (513)
.+.+|...|.|.+|+|.. .+++++|.|-+||+||+..-+....... . +-+..+.--+.++.||
T Consensus 130 ---vltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH 205 (1202)
T KOG0292|consen 130 ---VLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH 205 (1202)
T ss_pred ---EEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc
Confidence 568999999999999988 8999999999999999865322111000 0 1111122224567899
Q ss_pred cccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCC--CeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe
Q 010287 340 IASISDIKFARNGRHILSRDY-MTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 416 (513)
Q Consensus 340 ~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 416 (513)
...|+.++|+|.-.+|++|+| ..|++|.+.. .+ .+.+..+|... |.++-|+|..+.+++.+
T Consensus 206 DRGVNwaAfhpTlpliVSG~DDRqVKlWrmne-tKaWEvDtcrgH~nn---------------Vssvlfhp~q~lIlSns 269 (1202)
T KOG0292|consen 206 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE-TKAWEVDTCRGHYNN---------------VSSVLFHPHQDLILSNS 269 (1202)
T ss_pred ccccceEEecCCcceEEecCCcceeeEEEecc-ccceeehhhhcccCC---------------cceEEecCccceeEecC
Confidence 999999999999999999887 9999999874 33 34566777765 45999999999999999
Q ss_pred CCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 417 YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 417 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.|++|+|||+... ..++++....+..+.++.+|..+++|.|=..|.+..
T Consensus 270 EDksirVwDm~kR-t~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VF 318 (1202)
T KOG0292|consen 270 EDKSIRVWDMTKR-TSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVF 318 (1202)
T ss_pred CCccEEEEecccc-cceeeeeccCCeEEEEEecCCcceeeeecCCceEEE
Confidence 9999999999876 444777777888999999999999998876666554
No 45
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.8e-32 Score=256.63 Aligned_cols=282 Identities=19% Similarity=0.332 Sum_probs=227.1
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
..|.++.|+ ++|..+++++.|+.+++|+....+....
T Consensus 160 ~sv~~~~fs--~~g~~l~~~~~~~~i~~~~~~~~~~~~~----------------------------------------- 196 (456)
T KOG0266|consen 160 PSVTCVDFS--PDGRALAAASSDGLIRIWKLEGIKSNLL----------------------------------------- 196 (456)
T ss_pred CceEEEEEc--CCCCeEEEccCCCcEEEeecccccchhh-----------------------------------------
Confidence 779999995 4888999999999999999955442000
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
+ .+.+|...|.+++|+|++++++++ .|++|++||+........
T Consensus 197 --------------------------------~-~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~--- 240 (456)
T KOG0266|consen 197 --------------------------------R-ELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLK--- 240 (456)
T ss_pred --------------------------------c-cccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEE---
Confidence 0 025788889999999999999999 799999999954444443
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 351 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 351 (513)
.+.+|...|++++|+|++ +++++|+.|++|++||+++++. .+. +.+|.+.|.+++|+++
T Consensus 241 ----~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~----~~~------------l~~hs~~is~~~f~~d 299 (456)
T KOG0266|consen 241 ----TLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC----VRK------------LKGHSDGISGLAFSPD 299 (456)
T ss_pred ----EecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE----EEe------------eeccCCceEEEEECCC
Confidence 568999999999999999 9999999999999999998765 333 4566689999999999
Q ss_pred CCEEEEEeC-CeEEEEEccCCCC--CeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287 352 GRHILSRDY-MTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 428 (513)
Q Consensus 352 ~~~l~~~~~-~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 428 (513)
+++|++++. +.|++||+.+ +. ++..+..+.... .++.++|+|++++++++..|+.+++||+..
T Consensus 300 ~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~~~~~~~~-------------~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~ 365 (456)
T KOG0266|consen 300 GNLLVSASYDGTIRVWDLET-GSKLCLKLLSGAENSA-------------PVTSVQFSPNGKYLLSASLDRTLKLWDLRS 365 (456)
T ss_pred CCEEEEcCCCccEEEEECCC-CceeeeecccCCCCCC-------------ceeEEEECCCCcEEEEecCCCeEEEEEccC
Confidence 999999874 9999999996 55 345555554431 145899999999999999999999999997
Q ss_pred CCccceeecCCCCc---eeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccc-cCCeeEEEEeCCCCEEEEEc
Q 010287 429 GSAESTTLEASKNP---MRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDF-SMKLLHLAWHPSENSIACAA 504 (513)
Q Consensus 429 ~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~ 504 (513)
+ .....+.+|... +.+...++.++++++|+.|+.|++ |............+| ...+..++|+|..+++++++
T Consensus 366 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~---~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 366 G-KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYV---WDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSS 441 (456)
T ss_pred C-cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEE---EeCCccchhhhhcCCCCCceeccccCCCcCeeeecC
Confidence 7 444666666654 444556889999999999999999 444433344455567 88999999999999999887
Q ss_pred ---CCcEEEEe
Q 010287 505 ---SNSLYMYY 512 (513)
Q Consensus 505 ---~~~~~i~~ 512 (513)
+..+.+|.
T Consensus 442 ~~~d~~~~~w~ 452 (456)
T KOG0266|consen 442 FEGDGLIRLWK 452 (456)
T ss_pred cCCCceEEEec
Confidence 77777774
No 46
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5e-31 Score=269.49 Aligned_cols=305 Identities=21% Similarity=0.319 Sum_probs=215.0
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
....|.+.|++++|+|+|++||+|+.|+.|+||+.......+.. .......+.+
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~---------------~~~~~~~~~~----------- 531 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD---------------IHYPVVELAS----------- 531 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc---------------cccceEEecc-----------
Confidence 45569999999999999999999999999999997532110000 0000011111
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
...|.+++|+|. .+.+|++++.||+|++||+.+++....
T Consensus 532 --~~~v~~l~~~~~-~~~~las~~~Dg~v~lWd~~~~~~~~~-------------------------------------- 570 (793)
T PLN00181 532 --RSKLSGICWNSY-IKSQVASSNFEGVVQVWDVARSQLVTE-------------------------------------- 570 (793)
T ss_pred --cCceeeEEeccC-CCCEEEEEeCCCeEEEEECCCCeEEEE--------------------------------------
Confidence 156899999763 356899999999999999987653321
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEEEEE-cCCeEEEEEcCCCccee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSF 267 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~~~~ 267 (513)
+.+|...|++++|+| ++.+|++| .|++|++||++++....
T Consensus 571 --------------------------------------~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 571 --------------------------------------MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred --------------------------------------ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 357888899999997 78899998 69999999998765433
Q ss_pred eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287 268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 347 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 347 (513)
. +. +...+.++.|++..+.+|++|+.||.|++||+++.... ... +.+|...|.++.
T Consensus 613 ~--------~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~---~~~------------~~~h~~~V~~v~ 668 (793)
T PLN00181 613 T--------IK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP---LCT------------MIGHSKTVSYVR 668 (793)
T ss_pred E--------Ee-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc---ceE------------ecCCCCCEEEEE
Confidence 2 23 23578999996543389999999999999999865421 112 345668899999
Q ss_pred EeecCCEEEEEe-CCeEEEEEccCC-----CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcE
Q 010287 348 FARNGRHILSRD-YMTLKLWDINMD-----SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 421 (513)
Q Consensus 348 ~sp~~~~l~~~~-~~~v~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 421 (513)
|. ++.+|++++ |+.|++||+... ..++..+.+|... +..++|+|++++|++|+.|+.|
T Consensus 669 f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~---------------i~~v~~s~~~~~lasgs~D~~v 732 (793)
T PLN00181 669 FV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNV---------------KNFVGLSVSDGYIATGSETNEV 732 (793)
T ss_pred Ee-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCC---------------eeEEEEcCCCCEEEEEeCCCEE
Confidence 97 677888876 599999999742 2456677777654 3478999999999999999999
Q ss_pred EEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEE
Q 010287 422 RVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIA 501 (513)
Q Consensus 422 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la 501 (513)
++|+....... . ...+...... .+ + ....+...|.+++|+|++..|+
T Consensus 733 ~iw~~~~~~~~-~----------s~~~~~~~~~--~~-------~-------------~~~~~~~~V~~v~ws~~~~~lv 779 (793)
T PLN00181 733 FVYHKAFPMPV-L----------SYKFKTIDPV--SG-------L-------------EVDDASQFISSVCWRGQSSTLV 779 (793)
T ss_pred EEEECCCCCce-E----------EEecccCCcc--cc-------c-------------ccCCCCcEEEEEEEcCCCCeEE
Confidence 99997654211 1 1111000000 00 0 0112356788888888888888
Q ss_pred EEc-CCcEEEEe
Q 010287 502 CAA-SNSLYMYY 512 (513)
Q Consensus 502 ~~~-~~~~~i~~ 512 (513)
+|+ ++.+.||.
T Consensus 780 a~~~dG~I~i~~ 791 (793)
T PLN00181 780 AANSTGNIKILE 791 (793)
T ss_pred EecCCCcEEEEe
Confidence 666 56677774
No 47
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=3.2e-32 Score=229.77 Aligned_cols=298 Identities=17% Similarity=0.264 Sum_probs=235.2
Q ss_pred cccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccc
Q 010287 25 ERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD 104 (513)
Q Consensus 25 ~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 104 (513)
.+.+.+.+.|.++|+++... +++|++|++||.++||+..+... ..+.||.
T Consensus 95 aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~------------------------~~~~Ght---- 144 (423)
T KOG0313|consen 95 APKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSI------------------------KTIVGHT---- 144 (423)
T ss_pred CCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCceE------------------------EEEecCC----
Confidence 34555677899999999988 78999999999999999765443 5678998
Q ss_pred ccccccccccceeEEEeecC-CCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCC
Q 010287 105 YLKSLEIEEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (513)
Q Consensus 105 ~~~~~~~~~~i~~i~~~~~~-~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 183 (513)
++|.+++|.-.. ....|++++.|.++++|.++.++.+.....
T Consensus 145 --------~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~----------------------------- 187 (423)
T KOG0313|consen 145 --------GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK----------------------------- 187 (423)
T ss_pred --------cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh-----------------------------
Confidence 899988886422 234699999999999999987753321100
Q ss_pred CccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCC
Q 010287 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 262 (513)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~ 262 (513)
...||...|.+++..+++..+++| -|.+|.+|+..+
T Consensus 188 -------------------------------------------~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~ 224 (423)
T KOG0313|consen 188 -------------------------------------------VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVET 224 (423)
T ss_pred -------------------------------------------HhcccccceeEEEecCCCCeEEeecccceeeecccCC
Confidence 024999999999999999999999 599999999332
Q ss_pred Cc-ceeeecc---------------cCc-cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeec
Q 010287 263 SN-QSFNIVD---------------VKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 325 (513)
Q Consensus 263 ~~-~~~~~~~---------------~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 325 (513)
.. ...+-.. -.| ..+.+|..+|.++.|.+. ..+++++.|.+|+.||+.++..... +.
T Consensus 225 ~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~----~~ 298 (423)
T KOG0313|consen 225 DEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKST----LT 298 (423)
T ss_pred CccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccceee----ee
Confidence 11 0000000 001 357899999999999994 6899999999999999999876322 22
Q ss_pred cccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCC--CeeeeecccccccccccccccCCccceee
Q 010287 326 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFE 402 (513)
Q Consensus 326 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (513)
+. ..+.++.++|...+|++|+ |..+++||.+++.. ..+.+.+|...+ .+
T Consensus 299 ~~-------------ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV---------------ss 350 (423)
T KOG0313|consen 299 TN-------------KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV---------------SS 350 (423)
T ss_pred cC-------------cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh---------------hh
Confidence 22 4689999999999999976 59999999987433 346778888874 48
Q ss_pred EEEeCCCCE-EEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEe
Q 010287 403 CCLSGDGGR-VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV 467 (513)
Q Consensus 403 ~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 467 (513)
+.|+|...+ |++|+.|+++++||+++.+..+..+.+|...|.++.|. ++.++++|+.|..+++.
T Consensus 351 vkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 351 VKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF 415 (423)
T ss_pred eecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence 999997764 67999999999999998876779999999999999997 56799999999999993
No 48
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6e-32 Score=213.56 Aligned_cols=276 Identities=16% Similarity=0.298 Sum_probs=227.5
Q ss_pred cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
...|.++|.++.|+-+|+|.++++.|.+|++|+...+. +.+++.+|.
T Consensus 13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-----------------------liktYsghG---------- 59 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-----------------------LIKTYSGHG---------- 59 (307)
T ss_pred ecccccceEEEEEccCCCEEEEcCCCceEEeecccccc-----------------------eeeeecCCC----------
Confidence 34678999999999999999999999999999976555 447788888
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
..|..++. +.|+..|++++.|+.+.+||+.+|+....
T Consensus 60 --~EVlD~~~--s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr--------------------------------------- 96 (307)
T KOG0316|consen 60 --HEVLDAAL--SSDNSKFASCGGDKAVQVWDVNTGKVDRR--------------------------------------- 96 (307)
T ss_pred --ceeeeccc--cccccccccCCCCceEEEEEcccCeeeee---------------------------------------
Confidence 66888888 55778999999999999999999985442
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 269 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~ 269 (513)
+.+|...|+.+.|+.+...+++| -|.++++||.+......
T Consensus 97 -------------------------------------~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP-- 137 (307)
T KOG0316|consen 97 -------------------------------------FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP-- 137 (307)
T ss_pred -------------------------------------cccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc--
Confidence 46888999999999999999999 59999999998543211
Q ss_pred cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287 270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 349 (513)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 349 (513)
+ +.+....+.|.++..+. ..|++|+.||+++.||+|.|.+... + ...+|++++|+
T Consensus 138 i----Qildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sD----y--------------~g~pit~vs~s 192 (307)
T KOG0316|consen 138 I----QILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSD----Y--------------FGHPITSVSFS 192 (307)
T ss_pred c----chhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeehh----h--------------cCCcceeEEec
Confidence 0 24455678899998875 5699999999999999999886321 1 12579999999
Q ss_pred ecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287 350 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 428 (513)
Q Consensus 350 p~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 428 (513)
+|++..++++ ++++++.|-.+ ++.+..+++|.....+ ..++++.....+++|++||.|++||+..
T Consensus 193 ~d~nc~La~~l~stlrLlDk~t-GklL~sYkGhkn~eyk-------------ldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 193 KDGNCSLASSLDSTLRLLDKET-GKLLKSYKGHKNMEYK-------------LDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred CCCCEEEEeeccceeeecccch-hHHHHHhcccccceee-------------eeeeecccceeEEeccCCceEEEEEecc
Confidence 9999998887 49999999997 9999999999876432 3678888888999999999999999997
Q ss_pred CCccceeecCCCCc-eeEEEEcCCCCceeeecCC
Q 010287 429 GSAESTTLEASKNP-MRRQVQTPSRPSRPLGSLS 461 (513)
Q Consensus 429 ~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d 461 (513)
. .....+..+..+ +..+.+.|....+.++...
T Consensus 259 ~-~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~ 291 (307)
T KOG0316|consen 259 E-TQISKLSVVSTVIVTDLSCHPTMDDFITATGH 291 (307)
T ss_pred c-eeeeeeccCCceeEEeeecccCccceeEecCC
Confidence 7 455777777777 8899999987777666533
No 49
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1.8e-32 Score=240.05 Aligned_cols=312 Identities=18% Similarity=0.260 Sum_probs=234.0
Q ss_pred cccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287 29 GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (513)
Q Consensus 29 ~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (513)
+...+|+..|+++++.|.|..+++|+.|..|++||+.+..... +..++++..+
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~-------------------~~fr~l~P~E-------- 213 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM-------------------RSFRQLQPCE-------- 213 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccc-------------------hhhhccCccc--------
Confidence 3455789999999999999999999999999999987655321 1112222222
Q ss_pred ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (513)
Q Consensus 109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 188 (513)
...|++++|++ .+..|++.+..-..+|+|-...+.....+
T Consensus 214 ---~h~i~sl~ys~--Tg~~iLvvsg~aqakl~DRdG~~~~e~~K----------------------------------- 253 (641)
T KOG0772|consen 214 ---THQINSLQYSV--TGDQILVVSGSAQAKLLDRDGFEIVEFSK----------------------------------- 253 (641)
T ss_pred ---ccccceeeecC--CCCeEEEEecCcceeEEccCCceeeeeec-----------------------------------
Confidence 14599999966 66688888888899999987765443322
Q ss_pred ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CCEEEEE-cCCeEEEEEcCCCcce
Q 010287 189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQS 266 (513)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~vwd~~~~~~~ 266 (513)
|...|-|+.. .++|...++|.+|+|. .+.|+++ .||++++||++..+..
T Consensus 254 ----------------GDQYI~Dm~n-------------TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q 304 (641)
T KOG0772|consen 254 ----------------GDQYIRDMYN-------------TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ 304 (641)
T ss_pred ----------------cchhhhhhhc-------------cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh
Confidence 1112222211 3789999999999996 4456666 7999999999987776
Q ss_pred eeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccc--cEE
Q 010287 267 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA--SIS 344 (513)
Q Consensus 267 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~ 344 (513)
.+++..+ ...+..-+++.++|+|++ ++||+|+.||.|.+|+.+.... .....+ -..|.. .|+
T Consensus 305 ~qVik~k--~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v--~p~~~v-----------k~AH~~g~~It 368 (641)
T KOG0772|consen 305 LQVIKTK--PAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTV--RPVMKV-----------KDAHLPGQDIT 368 (641)
T ss_pred eeEEeec--cCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCccc--ccceEe-----------eeccCCCCcee
Confidence 6665333 334566789999999999 8999999999999999855332 111111 123334 899
Q ss_pred EEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC------
Q 010287 345 DIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY------ 417 (513)
Q Consensus 345 ~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------ 417 (513)
||.||+||++|++-+ |+++++||++...+++....+-... ++-+.++|||+.++|++|+.
T Consensus 369 si~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~-------------~~~tdc~FSPd~kli~TGtS~~~~~~ 435 (641)
T KOG0772|consen 369 SISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTP-------------FPGTDCCFSPDDKLILTGTSAPNGMT 435 (641)
T ss_pred EEEeccccchhhhccCCCceeeeeccccccchhhhcCCCcc-------------CCCCccccCCCceEEEecccccCCCC
Confidence 999999999999954 6999999999877777666544332 22358999999999999864
Q ss_pred CCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 418 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 418 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.|.+.+||..+. ...+.+......|..+.|+|.-+.+..|+.||.+++
T Consensus 436 ~g~L~f~d~~t~-d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~v 483 (641)
T KOG0772|consen 436 AGTLFFFDRMTL-DTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHV 483 (641)
T ss_pred CceEEEEeccce-eeEEEecCCCceEEEEeecchhhheeeecCCCceEE
Confidence 478999998876 455777777889999999999999999999999998
No 50
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=7.7e-32 Score=226.37 Aligned_cols=304 Identities=17% Similarity=0.236 Sum_probs=232.2
Q ss_pred ccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEec
Q 010287 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKT 94 (513)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (513)
-.|+..+ |+ ...+..+|++.|+|+.||.+|.|||||+-+|.|+||+..++... .
T Consensus 89 flW~~~~--ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~-----------------------~ 142 (399)
T KOG0296|consen 89 FLWDIST--GE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ-----------------------W 142 (399)
T ss_pred EEEEccC--Cc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceE-----------------------E
Confidence 3477776 44 55678899999999999999999999999999999999877641 1
Q ss_pred cccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccc
Q 010287 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (513)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (513)
.+..-- ..|.-++|+| .+..|+.|+.||.+.+|.+.++...++
T Consensus 143 ~~~~e~------------~dieWl~WHp--~a~illAG~~DGsvWmw~ip~~~~~kv----------------------- 185 (399)
T KOG0296|consen 143 KLDQEV------------EDIEWLKWHP--RAHILLAGSTDGSVWMWQIPSQALCKV----------------------- 185 (399)
T ss_pred Eeeccc------------CceEEEEecc--cccEEEeecCCCcEEEEECCCcceeeE-----------------------
Confidence 111111 5588899987 566999999999999999987532221
Q ss_pred cCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCC
Q 010287 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 253 (513)
Q Consensus 175 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~ 253 (513)
+.+|..++++-.|.|+|+.++++ .||
T Consensus 186 -----------------------------------------------------~~Gh~~~ct~G~f~pdGKr~~tgy~dg 212 (399)
T KOG0296|consen 186 -----------------------------------------------------MSGHNSPCTCGEFIPDGKRILTGYDDG 212 (399)
T ss_pred -----------------------------------------------------ecCCCCCcccccccCCCceEEEEecCc
Confidence 46888999999999999999999 799
Q ss_pred eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCc
Q 010287 254 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 333 (513)
Q Consensus 254 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 333 (513)
+|++|++.++.....+- -. ......++.++..+ ..++.|+.++.+++-+..+++... ...+ ..+...
T Consensus 213 ti~~Wn~ktg~p~~~~~------~~-e~~~~~~~~~~~~~-~~~~~g~~e~~~~~~~~~sgKVv~----~~n~-~~~~l~ 279 (399)
T KOG0296|consen 213 TIIVWNPKTGQPLHKIT------QA-EGLELPCISLNLAG-STLTKGNSEGVACGVNNGSGKVVN----CNNG-TVPELK 279 (399)
T ss_pred eEEEEecCCCceeEEec------cc-ccCcCCcccccccc-ceeEeccCCccEEEEccccceEEE----ecCC-CCcccc
Confidence 99999999987766542 11 13456788888888 899999999999999888877532 1111 111111
Q ss_pred cccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEE
Q 010287 334 SFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 412 (513)
Q Consensus 334 ~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 412 (513)
.........|.++.++..-.+.++|+ ||+|.|||+.. . .++..-.|+.. |+.+.|-+ ..+|
T Consensus 280 ~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~-~-~~R~~c~he~~---------------V~~l~w~~-t~~l 341 (399)
T KOG0296|consen 280 PSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA-S-TLRHICEHEDG---------------VTKLKWLN-TDYL 341 (399)
T ss_pred ccchhhhhhhhhcccccccchhhcccccceEEEEeccc-c-hhheeccCCCc---------------eEEEEEcC-cchh
Confidence 11111223444455555666777777 59999999984 3 33444445443 56899998 7899
Q ss_pred EEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 413 ATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 413 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
++++.+|.|+.||.++| ++..++.+|..+|..++++|+.++++++|.|+..++
T Consensus 342 ~t~c~~g~v~~wDaRtG-~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~V 394 (399)
T KOG0296|consen 342 LTACANGKVRQWDARTG-QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALV 394 (399)
T ss_pred eeeccCceEEeeecccc-ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEE
Confidence 99999999999999999 666899999999999999999999999999999888
No 51
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.2e-32 Score=237.83 Aligned_cols=289 Identities=21% Similarity=0.343 Sum_probs=227.5
Q ss_pred EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccC-ceeeeeeccccCCCcccCCCCcccC
Q 010287 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGS 170 (513)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (513)
....+.||+ ..|+++.|.|. .+.+|++++.|+.|+||++.. +.+..
T Consensus 206 ~~~~~~gH~------------kgvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~~~~lr-------------------- 252 (503)
T KOG0282|consen 206 LSHNLSGHT------------KGVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDDRRCLR-------------------- 252 (503)
T ss_pred heeeccCCc------------cccchhhhccc-eeeEEEecCCCceEEEEEEecCcceeh--------------------
Confidence 345678888 99999999873 457899999999999999976 33322
Q ss_pred cccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE
Q 010287 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 250 (513)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 250 (513)
+ ..+|..+|.+++|+++|..|+++
T Consensus 253 -------------------------------------------------------t-f~gH~k~Vrd~~~s~~g~~fLS~ 276 (503)
T KOG0282|consen 253 -------------------------------------------------------T-FKGHRKPVRDASFNNCGTSFLSA 276 (503)
T ss_pred -------------------------------------------------------h-hhcchhhhhhhhccccCCeeeee
Confidence 2 36899999999999999999998
Q ss_pred -cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccC
Q 010287 251 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 329 (513)
Q Consensus 251 -~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 329 (513)
.|+.|++||.++++..... .....++|+.|+|++++.|++|+.|+.|+.||+|+++....
T Consensus 277 sfD~~lKlwDtETG~~~~~f---------~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe---------- 337 (503)
T KOG0282|consen 277 SFDRFLKLWDTETGQVLSRF---------HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE---------- 337 (503)
T ss_pred ecceeeeeeccccceEEEEE---------ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH----------
Confidence 6999999999998866432 12456889999999989999999999999999999987433
Q ss_pred CCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC
Q 010287 330 PGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 408 (513)
Q Consensus 330 ~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 408 (513)
+..|-+.|..+.|-++|+.+++.+| +.++||+.+. ..+++....+... .+.++..+|+
T Consensus 338 ------Yd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~-~v~ik~i~~~~~h--------------smP~~~~~P~ 396 (503)
T KOG0282|consen 338 ------YDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRI-PVPIKNIADPEMH--------------TMPCLTLHPN 396 (503)
T ss_pred ------HHhhhhheeeeEEccCCceEeeeccCccEEEEEcCC-Cccchhhcchhhc--------------cCcceecCCC
Confidence 3445578999999999999999877 9999999986 4444433221110 0228999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCCc--cceeecCCCCc--eeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccc
Q 010287 409 GGRVATGSYSNLFRVFGCSEGSA--ESTTLEASKNP--MRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDF 484 (513)
Q Consensus 409 ~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~ 484 (513)
+++++.-+.|+.|.+|.+...-+ ....+++|..+ -..+.|||||.+|++|+.||.+.+ |.-....+......|
T Consensus 397 ~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~---wdwkt~kl~~~lkah 473 (503)
T KOG0282|consen 397 GKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNF---WDWKTTKLVSKLKAH 473 (503)
T ss_pred CCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEE---eechhhhhhhccccC
Confidence 99999999999999998764322 22567787644 446789999999999999999999 443333455556678
Q ss_pred cCCeeEEEEeCCC-CEEEEEc-CCcEEEEe
Q 010287 485 SMKLLHLAWHPSE-NSIACAA-SNSLYMYY 512 (513)
Q Consensus 485 ~~~i~~~~~sp~~-~~la~~~-~~~~~i~~ 512 (513)
.+++..+.|||-. ..+|+++ ++.|.+|.
T Consensus 474 ~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 474 DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999995 4577777 77788874
No 52
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.3e-32 Score=250.88 Aligned_cols=272 Identities=19% Similarity=0.317 Sum_probs=199.0
Q ss_pred cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCC-----------------------cc-----C-cccccccc
Q 010287 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGG-----------------------QR-----R-DLEMMDYS 83 (513)
Q Consensus 33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~-----------------------~~-----~-~~~~~~~~ 83 (513)
.|.++|.++.||+||+|||+|+.||.|+||.+...+.... .. + .......+
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 6999999999999999999999999999999876111000 00 0 00000000
Q ss_pred ---ccC-----CCcceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccc
Q 010287 84 ---MSR-----HPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155 (513)
Q Consensus 84 ---~~~-----~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~ 155 (513)
+.. .-.-+...+|.||. +.|.+|.|+. + .+|++++.|++||||++...+|..+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt------------~DILDlSWSK--n-~fLLSSSMDKTVRLWh~~~~~CL~~---- 405 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHT------------ADILDLSWSK--N-NFLLSSSMDKTVRLWHPGRKECLKV---- 405 (712)
T ss_pred CccccCCCccccccccchhhhhccc------------hhheeccccc--C-CeeEeccccccEEeecCCCcceeeE----
Confidence 000 00112334577787 8899999953 4 5999999999999999988776553
Q ss_pred cCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCe
Q 010287 156 VHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHI 235 (513)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v 235 (513)
..|.+-|
T Consensus 406 -------------------------------------------------------------------------F~HndfV 412 (712)
T KOG0283|consen 406 -------------------------------------------------------------------------FSHNDFV 412 (712)
T ss_pred -------------------------------------------------------------------------EecCCee
Confidence 3788889
Q ss_pred EEEEecc-CCCEEEEEc-CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC
Q 010287 236 NSISNNS-DGETFISAD-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 313 (513)
Q Consensus 236 ~~~~~~~-~~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 313 (513)
+|++|+| |.++|++|. |+.|+||++...+ .... ..-..-|++++|.|+| +..+.|+.+|.+++|+...
T Consensus 413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~~-Vv~W--------~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~ 482 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLDGKVRLWSISDKK-VVDW--------NDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEG 482 (712)
T ss_pred EEEEecccCCCcEeecccccceEEeecCcCe-eEee--------hhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccC
Confidence 9999999 789999994 9999999998433 3221 2234779999999998 9999999999999999887
Q ss_pred cccccccceeeccccCCCCccccccccccEEEEEEeecC--CEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccc
Q 010287 314 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 391 (513)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
.+............. -..|. .|+.+.|.|.. +.|++..|..|+|||.+. ..++..+++.......
T Consensus 483 lk~~~~~~I~~~~~K-------k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ---- 549 (712)
T KOG0283|consen 483 LKLVSDFHIRLHNKK-------KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQ---- 549 (712)
T ss_pred CeEEEeeeEeeccCc-------cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCcc----
Confidence 665322111111110 12233 79999999843 488888889999999985 7788888876654321
Q ss_pred cccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287 392 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 428 (513)
Q Consensus 392 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 428 (513)
....|+.||++|+++++|..|++|+...
T Consensus 550 ---------~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 550 ---------ISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ---------eeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 2578999999999999999999999743
No 53
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=7e-31 Score=211.44 Aligned_cols=289 Identities=17% Similarity=0.218 Sum_probs=226.6
Q ss_pred cccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287 29 GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (513)
Q Consensus 29 ~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (513)
.-..+|..+++-+.|+.+|.+|.+++.|.++.||-..+++.+ -++.||+
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl-----------------------Gty~GHt-------- 52 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL-----------------------GTYDGHT-------- 52 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCcee-----------------------eeecCCC--------
Confidence 345689999999999999999999999999999998777642 6789999
Q ss_pred ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (513)
Q Consensus 109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 188 (513)
++|.++.. +.+..++++++.|.++++||+++|+.+......
T Consensus 53 ----GavW~~Di--d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~--------------------------------- 93 (327)
T KOG0643|consen 53 ----GAVWCCDI--DWDSKHLITGSADQTAKLWDVETGKQLATWKTN--------------------------------- 93 (327)
T ss_pred ----ceEEEEEe--cCCcceeeeccccceeEEEEcCCCcEEEEeecC---------------------------------
Confidence 99999998 557789999999999999999999876543322
Q ss_pred ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-c-----CCeEEEEEcCC
Q 010287 189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-----DLRINLWNLEI 262 (513)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~-----d~~i~vwd~~~ 262 (513)
.+|..+.|+++|++++.+ + .+.|.++|++.
T Consensus 94 --------------------------------------------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~ 129 (327)
T KOG0643|consen 94 --------------------------------------------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRD 129 (327)
T ss_pred --------------------------------------------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccC
Confidence 348889999999988875 2 46799999984
Q ss_pred CcceeeecccCc-cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccc
Q 010287 263 SNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 341 (513)
Q Consensus 263 ~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (513)
..... ..-.| ..+..+...++.+-|.|-+ ..|++|.+||.|..||++++..... . ...|..
T Consensus 130 ~~~~~--~s~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v~---s------------~~~h~~ 191 (327)
T KOG0643|consen 130 DSSDI--DSEEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKELVD---S------------DEEHSS 191 (327)
T ss_pred Chhhh--cccCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCceeee---c------------hhhhcc
Confidence 33110 00011 2445677899999999999 9999999999999999999864321 1 244667
Q ss_pred cEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCc
Q 010287 342 SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 420 (513)
Q Consensus 342 ~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 420 (513)
.|+.++++||..++++++. .+-++||+.+ -..++++..... |.+.+++|....++.|+....
T Consensus 192 ~Ind~q~s~d~T~FiT~s~Dttakl~D~~t-l~v~Kty~te~P----------------vN~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 192 KINDLQFSRDRTYFITGSKDTTAKLVDVRT-LEVLKTYTTERP----------------VNTAAISPLLDHVILGGGQEA 254 (327)
T ss_pred ccccccccCCcceEEecccCccceeeeccc-eeeEEEeeeccc----------------ccceecccccceEEecCCcee
Confidence 8999999999999999884 9999999996 777777765443 348899998888777664332
Q ss_pred EEEEe--cCCC-----------CccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 421 FRVFG--CSEG-----------SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 421 i~vwd--~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.-|=- .+.+ .++.-.+++|.+|+++++|+|+|+..++|++||.||+
T Consensus 255 ~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 255 MDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRL 313 (327)
T ss_pred eeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEE
Confidence 22211 1111 1334567799999999999999999999999999999
No 54
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-31 Score=238.69 Aligned_cols=278 Identities=18% Similarity=0.242 Sum_probs=231.6
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
++|-++.|+|... .++++-..|.|.|||.++......+.+.
T Consensus 14 dRVKsVd~HPteP--w~la~LynG~V~IWnyetqtmVksfeV~------------------------------------- 54 (794)
T KOG0276|consen 14 DRVKSVDFHPTEP--WILAALYNGDVQIWNYETQTMVKSFEVS------------------------------------- 54 (794)
T ss_pred CceeeeecCCCCc--eEEEeeecCeeEEEecccceeeeeeeec-------------------------------------
Confidence 8899999988555 8889999999999999988765543322
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
..+|++..|-+..+++++| +|..|++|+.++.++..
T Consensus 55 ---------------------------------------~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~---- 91 (794)
T KOG0276|consen 55 ---------------------------------------EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK---- 91 (794)
T ss_pred ---------------------------------------ccchhhheeeeccceEEEecCCceEEEEecccceeeE----
Confidence 2347788888888999999 79999999999888664
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR- 350 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp- 350 (513)
.++.|.+.|++++.+|.. .++++++.|-.|++||....-.+ ..+ +.||...|++++|+|
T Consensus 92 ----~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~---~qt------------feGH~HyVMqv~fnPk 151 (794)
T KOG0276|consen 92 ----TFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWAC---EQT------------FEGHEHYVMQVAFNPK 151 (794)
T ss_pred ----EeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceee---eeE------------EcCcceEEEEEEecCC
Confidence 578999999999999998 78999999999999998765432 334 455667899999999
Q ss_pred cCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC--CEEEEEeCCCcEEEEecC
Q 010287 351 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG--GRVATGSYSNLFRVFGCS 427 (513)
Q Consensus 351 ~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vwd~~ 427 (513)
|...+++++ |++|+||.+.. ..+..++.+|+..+ .++++-+.| .+|++|++|..|+|||..
T Consensus 152 D~ntFaS~sLDrTVKVWslgs-~~~nfTl~gHekGV---------------N~Vdyy~~gdkpylIsgaDD~tiKvWDyQ 215 (794)
T KOG0276|consen 152 DPNTFASASLDRTVKVWSLGS-PHPNFTLEGHEKGV---------------NCVDYYTGGDKPYLISGADDLTIKVWDYQ 215 (794)
T ss_pred CccceeeeeccccEEEEEcCC-CCCceeeeccccCc---------------ceEEeccCCCcceEEecCCCceEEEeecc
Confidence 778888887 69999999996 88899999999774 488887644 699999999999999999
Q ss_pred CCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCc
Q 010287 428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS 507 (513)
Q Consensus 428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~ 507 (513)
+..+ .+++++|...|..+.|+|.-..+++|++||++|| |....+.+.....---++|.+++-.+.++.+|+|.|++
T Consensus 216 tk~C-V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvri---Whs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg 291 (794)
T KOG0276|consen 216 TKSC-VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRI---WNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEG 291 (794)
T ss_pred hHHH-HHHhhcccccceEEEecCCCcEEEEecCCccEEE---ecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCC
Confidence 8744 4899999999999999999999999999999999 54443333322222357899999999999999999998
Q ss_pred EEEEe
Q 010287 508 LYMYY 512 (513)
Q Consensus 508 ~~i~~ 512 (513)
.++.+
T Consensus 292 ~i~v~ 296 (794)
T KOG0276|consen 292 SVTVK 296 (794)
T ss_pred cEEEE
Confidence 88765
No 55
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.9e-30 Score=233.91 Aligned_cols=277 Identities=20% Similarity=0.332 Sum_probs=219.9
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
+.|.+++|+| ++.++++++.||.+++|++.+++....
T Consensus 10 ~~i~~~~~~~--~~~~l~~~~~~g~i~i~~~~~~~~~~~----------------------------------------- 46 (289)
T cd00200 10 GGVTCVAFSP--DGKLLATGSGDGTIKVWDLETGELLRT----------------------------------------- 46 (289)
T ss_pred CCEEEEEEcC--CCCEEEEeecCcEEEEEEeeCCCcEEE-----------------------------------------
Confidence 8899999965 677999999999999999987642211
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
...|...+..+.|+++++.++++ .++.|++|++..++...
T Consensus 47 -----------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~---- 87 (289)
T cd00200 47 -----------------------------------LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR---- 87 (289)
T ss_pred -----------------------------------EecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceE----
Confidence 23566678899999999899988 69999999998654332
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 351 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 351 (513)
.+..|...+.++.|+|++ .++++++.|+.+.+||+++++. ...+ ..|...+.++.|+|+
T Consensus 88 ----~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~----~~~~------------~~~~~~i~~~~~~~~ 146 (289)
T cd00200 88 ----TLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKC----LTTL------------RGHTDWVNSVAFSPD 146 (289)
T ss_pred ----EEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEE----EEEe------------ccCCCcEEEEEEcCc
Confidence 345678889999999997 8888888899999999986554 2222 234468999999999
Q ss_pred CCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287 352 GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 430 (513)
Q Consensus 352 ~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 430 (513)
+.++++++ ++.|++||++. .+.+..+..+... +.++.|+|+++.+++++.|+.|++||+..+
T Consensus 147 ~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~- 209 (289)
T cd00200 147 GTFVASSSQDGTIKLWDLRT-GKCVATLTGHTGE---------------VNSVAFSPDGEKLLSSSSDGTIKLWDLSTG- 209 (289)
T ss_pred CCEEEEEcCCCcEEEEEccc-cccceeEecCccc---------------cceEEECCCcCEEEEecCCCcEEEEECCCC-
Confidence 99999988 69999999985 6777777666543 448999999999999999999999999876
Q ss_pred ccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEE
Q 010287 431 AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLY 509 (513)
Q Consensus 431 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~ 509 (513)
.....+..|..++..+.++|++.++++++.|+.+++.+... .........|...|.+++|+|++++|++++ ++.+.
T Consensus 210 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 210 KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT---GECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred ceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC---ceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEE
Confidence 44466668888999999999999999998899999932221 112222235788999999999999999877 55677
Q ss_pred EEe
Q 010287 510 MYY 512 (513)
Q Consensus 510 i~~ 512 (513)
+|.
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 763
No 56
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=3.7e-31 Score=217.50 Aligned_cols=312 Identities=16% Similarity=0.226 Sum_probs=231.8
Q ss_pred cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
...|++++.+.+|||||.++|||+.|-.|+|.|++........++-..+ .....+-+..+|-.|.
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~-----~~qa~hPvIRTlYDH~---------- 172 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISG-----DTQARHPVIRTLYDHV---------- 172 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccC-----CcccCCceEeehhhcc----------
Confidence 4469999999999999999999999999999997632110000000000 0001112334444555
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
+.|+++.|+| ....|++++.|++|+++|+.....+..++.
T Consensus 173 --devn~l~FHP--re~ILiS~srD~tvKlFDfsK~saKrA~K~------------------------------------ 212 (430)
T KOG0640|consen 173 --DEVNDLDFHP--RETILISGSRDNTVKLFDFSKTSAKRAFKV------------------------------------ 212 (430)
T ss_pred --Ccccceeecc--hhheEEeccCCCeEEEEecccHHHHHHHHH------------------------------------
Confidence 8999999987 556999999999999999986543332221
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 269 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~ 269 (513)
.....+|.++.|+|.|.+|+.| +-.++++||+++-+....-
T Consensus 213 --------------------------------------~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa 254 (430)
T KOG0640|consen 213 --------------------------------------FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA 254 (430)
T ss_pred --------------------------------------hhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec
Confidence 1223569999999999999999 7889999999976644332
Q ss_pred cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287 270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 349 (513)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 349 (513)
. .-..|.+.|+++.+++.+ ++.++++.||.|++||--++++ +.++....+ ...|.+..|.
T Consensus 255 n-----Pd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rC----v~t~~~AH~----------gsevcSa~Ft 314 (430)
T KOG0640|consen 255 N-----PDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRC----VRTIGNAHG----------GSEVCSAVFT 314 (430)
T ss_pred C-----cccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHH----HHHHHhhcC----------CceeeeEEEc
Confidence 1 336799999999999999 9999999999999999877665 444432211 1579999999
Q ss_pred ecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecC
Q 010287 350 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCS 427 (513)
Q Consensus 350 p~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~ 427 (513)
.+++++++.+ |..+++|.+.+ ++++..+.+....... .+ -+...|+....|++.-. ..+.+.-||.+
T Consensus 315 kn~kyiLsSG~DS~vkLWEi~t-~R~l~~YtGAg~tgrq--~~--------rtqAvFNhtEdyVl~pDEas~slcsWdaR 383 (430)
T KOG0640|consen 315 KNGKYILSSGKDSTVKLWEIST-GRMLKEYTGAGTTGRQ--KH--------RTQAVFNHTEDYVLFPDEASNSLCSWDAR 383 (430)
T ss_pred cCCeEEeecCCcceeeeeeecC-CceEEEEecCCcccch--hh--------hhhhhhcCccceEEccccccCceeecccc
Confidence 9999999855 69999999997 8999988776322110 00 12456777777777554 45789999999
Q ss_pred CCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
+..+....--+|.++++.+.-+|.+..+.+|+.|...|+
T Consensus 384 tadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRF 422 (430)
T KOG0640|consen 384 TADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARF 422 (430)
T ss_pred chhhhhhcccCCCCCceEEEeCCCCCceeeecccceeee
Confidence 885555555699999999999999999999999999998
No 57
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1e-30 Score=209.79 Aligned_cols=266 Identities=16% Similarity=0.278 Sum_probs=211.6
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
..|.+++| +.+|..|++++.|+++++|+++..+.....
T Consensus 21 ~~v~Sv~w--n~~g~~lasgs~dktv~v~n~e~~r~~~~~---------------------------------------- 58 (313)
T KOG1407|consen 21 QKVHSVAW--NCDGTKLASGSFDKTVSVWNLERDRFRKEL---------------------------------------- 58 (313)
T ss_pred hcceEEEE--cccCceeeecccCCceEEEEecchhhhhhh----------------------------------------
Confidence 88999999 668999999999999999999876322110
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEEEEE-cCCeEEEEEcCCCcceeeec
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIV 270 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~~~~~~~ 270 (513)
...+|.+.|-.++|+| ....|+++ .|.+|++||++.++....+.
T Consensus 59 ----------------------------------~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~ 104 (313)
T KOG1407|consen 59 ----------------------------------VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIE 104 (313)
T ss_pred ----------------------------------cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEee
Confidence 0257888899999988 45677777 79999999999888765431
Q ss_pred ccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee
Q 010287 271 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 350 (513)
Q Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp 350 (513)
....-.-+.|+|+| .+++.++.|..|...|.++.+..... +.. -.+..++|+-
T Consensus 105 ---------~~~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~----~~~-------------~e~ne~~w~~ 157 (313)
T KOG1407|consen 105 ---------TKGENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEE----QFK-------------FEVNEISWNN 157 (313)
T ss_pred ---------ccCcceEEEEcCCC-CEEEEecCcccEEEEEecccceeehh----ccc-------------ceeeeeeecC
Confidence 12333568899999 99999999999999999987653221 111 3477788987
Q ss_pred cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 351 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 351 ~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
++.+++..+. |.|.|..... -+++..++.|... ..++.|+|+|+++|+|+.|-.+.+||+...
T Consensus 158 ~nd~Fflt~GlG~v~ILsyps-Lkpv~si~AH~sn---------------CicI~f~p~GryfA~GsADAlvSLWD~~EL 221 (313)
T KOG1407|consen 158 SNDLFFLTNGLGCVEILSYPS-LKPVQSIKAHPSN---------------CICIEFDPDGRYFATGSADALVSLWDVDEL 221 (313)
T ss_pred CCCEEEEecCCceEEEEeccc-cccccccccCCcc---------------eEEEEECCCCceEeeccccceeeccChhHh
Confidence 7777776555 9999999985 8999999999854 348999999999999999999999999855
Q ss_pred CccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE---ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcC
Q 010287 430 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR---VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS 505 (513)
Q Consensus 430 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~ 505 (513)
-++ ..+..+..||+.+.|+.+|++||+||+|..|-| ..|.+.+ .+.+.++-..++|||...+||-+.+
T Consensus 222 iC~-R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~-------eI~~~~~t~tVAWHPk~~LLAyA~d 292 (313)
T KOG1407|consen 222 ICE-RCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVW-------EIPCEGPTFTVAWHPKRPLLAYACD 292 (313)
T ss_pred hhh-eeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEE-------EeeccCCceeEEecCCCceeeEEec
Confidence 333 677788999999999999999999999999999 2233333 2235889999999999999996653
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6e-32 Score=225.55 Aligned_cols=268 Identities=13% Similarity=0.267 Sum_probs=218.0
Q ss_pred ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (513)
Q Consensus 34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (513)
..+.|.|+.+.. ..+++|..|++|+|||..+.. ....+.||+ +
T Consensus 196 ~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~-----------------------c~~~L~GHt------------G 238 (499)
T KOG0281|consen 196 NSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLE-----------------------CLKILTGHT------------G 238 (499)
T ss_pred cCCceEEEEecc--hhhhcccccCceEEeccccHH-----------------------HHHhhhcCC------------C
Confidence 468999999864 479999999999999976544 447789999 8
Q ss_pred cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (513)
Q Consensus 114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (513)
.|.|+.| +...+++|+.|.+|++||++++++..+
T Consensus 239 SVLCLqy----d~rviisGSSDsTvrvWDv~tge~l~t------------------------------------------ 272 (499)
T KOG0281|consen 239 SVLCLQY----DERVIVSGSSDSTVRVWDVNTGEPLNT------------------------------------------ 272 (499)
T ss_pred cEEeeec----cceEEEecCCCceEEEEeccCCchhhH------------------------------------------
Confidence 8999999 456899999999999999999975543
Q ss_pred CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc
Q 010287 194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 272 (513)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~ 272 (513)
+-.|...|..+.|+. .+++++ .|.+|.+||+..... ..+.
T Consensus 273 ----------------------------------lihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~-it~r-- 313 (499)
T KOG0281|consen 273 ----------------------------------LIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTD-ITLR-- 313 (499)
T ss_pred ----------------------------------HhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchH-HHHH--
Confidence 347888899999975 478888 699999999986552 2111
Q ss_pred CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC
Q 010287 273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 352 (513)
Q Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~ 352 (513)
..+.+|...|+.+.|+. +++++++.|.+|++|++.+++. +++ +.+|...|.|+.+ .+
T Consensus 314 --rVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~ef----vRt------------l~gHkRGIAClQY--r~ 370 (499)
T KOG0281|consen 314 --RVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEF----VRT------------LNGHKRGIACLQY--RD 370 (499)
T ss_pred --HHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceee----ehh------------hhcccccceehhc--cC
Confidence 25689999999999965 6999999999999999998876 444 4556678888877 48
Q ss_pred CEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc
Q 010287 353 RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 431 (513)
Q Consensus 353 ~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 431 (513)
+++++|+. .+|++||+.. +.+++.+.+|+..+. ++.|. .+.+++|+.||+|++||+.++..
T Consensus 371 rlvVSGSSDntIRlwdi~~-G~cLRvLeGHEeLvR---------------ciRFd--~krIVSGaYDGkikvWdl~aald 432 (499)
T KOG0281|consen 371 RLVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVR---------------CIRFD--NKRIVSGAYDGKIKVWDLQAALD 432 (499)
T ss_pred eEEEecCCCceEEEEeccc-cHHHHHHhchHHhhh---------------heeec--CceeeeccccceEEEEecccccC
Confidence 99999874 9999999997 999999999998744 77774 66899999999999999987643
Q ss_pred c--------ceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 432 E--------STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 432 ~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
. +.++..|.+.|..+.| |...+++++.|..|-+
T Consensus 433 pra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILi 473 (499)
T KOG0281|consen 433 PRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILI 473 (499)
T ss_pred CcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEE
Confidence 2 2344577888888887 4567888899999988
No 59
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=2.6e-31 Score=221.79 Aligned_cols=267 Identities=18% Similarity=0.271 Sum_probs=214.3
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
+.|+|+++ |+..+++|..|++|++||..+..+..+
T Consensus 198 kgVYClQY----DD~kiVSGlrDnTikiWD~n~~~c~~~----------------------------------------- 232 (499)
T KOG0281|consen 198 KGVYCLQY----DDEKIVSGLRDNTIKIWDKNSLECLKI----------------------------------------- 232 (499)
T ss_pred CceEEEEe----cchhhhcccccCceEEeccccHHHHHh-----------------------------------------
Confidence 77999999 556899999999999999987765432
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
+.||.+.|.|+.|.. +.+++| +|.+|++||.++++.+.
T Consensus 233 -----------------------------------L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~---- 271 (499)
T KOG0281|consen 233 -----------------------------------LTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN---- 271 (499)
T ss_pred -----------------------------------hhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh----
Confidence 469999999998864 588898 79999999999887653
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 351 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 351 (513)
.+-.|...|..+.|+. .++++++.|.+|.+||+...... . ....+.||.+.|+.+.|+
T Consensus 272 ----tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~i-t------------~rrVLvGHrAaVNvVdfd-- 329 (499)
T KOG0281|consen 272 ----TLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDI-T------------LRRVLVGHRAAVNVVDFD-- 329 (499)
T ss_pred ----HHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHH-H------------HHHHHhhhhhheeeeccc--
Confidence 4567899999999986 58999999999999999765421 1 122367888999999996
Q ss_pred CCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287 352 GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 430 (513)
Q Consensus 352 ~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 430 (513)
.+++++++ |.+|++|++.+ .+.++++.+|.... .+.--.++++++|+.|.+|++||++.|
T Consensus 330 ~kyIVsASgDRTikvW~~st-~efvRtl~gHkRGI-----------------AClQYr~rlvVSGSSDntIRlwdi~~G- 390 (499)
T KOG0281|consen 330 DKYIVSASGDRTIKVWSTST-CEFVRTLNGHKRGI-----------------ACLQYRDRLVVSGSSDNTIRLWDIECG- 390 (499)
T ss_pred cceEEEecCCceEEEEeccc-eeeehhhhcccccc-----------------eehhccCeEEEecCCCceEEEEecccc-
Confidence 55999976 49999999997 99999999998652 234447889999999999999999998
Q ss_pred ccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccc---------cCCccccccCCeeEEEEeCCCCEEE
Q 010287 431 AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALD---------ANGNAFDFSMKLLHLAWHPSENSIA 501 (513)
Q Consensus 431 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~---------~~~~~~~~~~~i~~~~~sp~~~~la 501 (513)
..+..+++|..-|+++.| +.+.+++|+.||.|++ |++.... -.....+|+++|..+.|..- +.++
T Consensus 391 ~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikv---Wdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f-qIvs 464 (499)
T KOG0281|consen 391 ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKV---WDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF-QIIS 464 (499)
T ss_pred HHHHHHhchHHhhhheee--cCceeeeccccceEEE---EecccccCCcccccchHHHhhhhccceeEEEeecce-EEEe
Confidence 455899999999999998 4668999999999999 3332111 12234578999999999642 3444
Q ss_pred EEcCCcEEEEe
Q 010287 502 CAASNSLYMYY 512 (513)
Q Consensus 502 ~~~~~~~~i~~ 512 (513)
+..++.|.||+
T Consensus 465 ssHddtILiWd 475 (499)
T KOG0281|consen 465 SSHDDTILIWD 475 (499)
T ss_pred ccCCCeEEEEE
Confidence 55599999996
No 60
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.6e-29 Score=205.55 Aligned_cols=279 Identities=19% Similarity=0.260 Sum_probs=215.0
Q ss_pred ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (513)
Q Consensus 34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (513)
-...|+++.|+++|.+|++++.|.+++|||..+++.. ..+..++ -
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~-----------------------~ti~skk------------y 57 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQV-----------------------KTINSKK------------Y 57 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCcee-----------------------eEeeccc------------c
Confidence 3579999999999999999999999999998877742 3344444 5
Q ss_pred cceeEEEeecCCCceEEEeec--CCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccC
Q 010287 114 KINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (513)
Q Consensus 114 ~i~~i~~~~~~~~~~l~s~s~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 191 (513)
.|..++|.. ....++.++. |.+||.-++.+++...
T Consensus 58 G~~~~~Fth--~~~~~i~sStk~d~tIryLsl~dNkylR----------------------------------------- 94 (311)
T KOG1446|consen 58 GVDLACFTH--HSNTVIHSSTKEDDTIRYLSLHDNKYLR----------------------------------------- 94 (311)
T ss_pred cccEEEEec--CCceEEEccCCCCCceEEEEeecCceEE-----------------------------------------
Confidence 688888853 3345555555 8899999998876544
Q ss_pred CCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeec
Q 010287 192 CASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 270 (513)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~ 270 (513)
++.||...|.+++.+|-+..++++ -|++|++||++..+...-+
T Consensus 95 -----------------------------------YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l- 138 (311)
T KOG1446|consen 95 -----------------------------------YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL- 138 (311)
T ss_pred -----------------------------------EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE-
Confidence 257999999999999998999998 6999999999965543321
Q ss_pred ccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee
Q 010287 271 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 350 (513)
Q Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp 350 (513)
+...-..++|.|+| -++|++.....|++||+|.-.. .+..++.... +-....+.+.|||
T Consensus 139 ---------~~~~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dk--gPF~tf~i~~---------~~~~ew~~l~FS~ 197 (311)
T KOG1446|consen 139 ---------NLSGRPIAAFDPEG-LIFALANGSELIKLYDLRSFDK--GPFTTFSITD---------NDEAEWTDLEFSP 197 (311)
T ss_pred ---------ecCCCcceeECCCC-cEEEEecCCCeEEEEEecccCC--CCceeEccCC---------CCccceeeeEEcC
Confidence 12233568899999 8888888888999999987532 1233333221 1125689999999
Q ss_pred cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 351 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 351 ~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
||++|+.++. +.+++.|.-. +....++..+......- ...+|+||++++++|+.||+|.+|+++++
T Consensus 198 dGK~iLlsT~~s~~~~lDAf~-G~~~~tfs~~~~~~~~~------------~~a~ftPds~Fvl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 198 DGKSILLSTNASFIYLLDAFD-GTVKSTFSGYPNAGNLP------------LSATFTPDSKFVLSGSDDGTIHVWNLETG 264 (311)
T ss_pred CCCEEEEEeCCCcEEEEEccC-CcEeeeEeeccCCCCcc------------eeEEECCCCcEEEEecCCCcEEEEEcCCC
Confidence 9999998887 9999999886 88888887776542100 26899999999999999999999999998
Q ss_pred CccceeecC-CCCceeEEEEcCCCCceeeecCC
Q 010287 430 SAESTTLEA-SKNPMRRQVQTPSRPSRPLGSLS 461 (513)
Q Consensus 430 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d 461 (513)
. ....+.+ +..++.++.|+|.-..+++++..
T Consensus 265 ~-~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~ 296 (311)
T KOG1446|consen 265 K-KVAVLRGPNGGPVSCVRFNPRYAMFVSASSN 296 (311)
T ss_pred c-EeeEecCCCCCCccccccCCceeeeeecCce
Confidence 4 4466666 78899999999998888877543
No 61
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.9e-30 Score=240.29 Aligned_cols=293 Identities=16% Similarity=0.199 Sum_probs=229.3
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
..|-.++|+|+.. .++++-..|.|++||.+-+.+...
T Consensus 10 sRvKglsFHP~rP--wILtslHsG~IQlWDYRM~tli~r----------------------------------------- 46 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRP--WILTSLHSGVIQLWDYRMGTLIDR----------------------------------------- 46 (1202)
T ss_pred ccccceecCCCCC--EEEEeecCceeeeehhhhhhHHhh-----------------------------------------
Confidence 7799999998665 899999999999999987764432
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
+..|.++|+.++|+|++.+|++| +|-.|++|+..+.+..+
T Consensus 47 -----------------------------------FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf---- 87 (1202)
T KOG0292|consen 47 -----------------------------------FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF---- 87 (1202)
T ss_pred -----------------------------------hhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh----
Confidence 36899999999999999999998 79999999998655544
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 351 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 351 (513)
++.+|-+.|+.+.|++.- -+|+++|.|-+|+||+..++.. +.. ++||.-.|+|.+|+|.
T Consensus 88 ----tL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~----iav------------ltGHnHYVMcAqFhpt 146 (1202)
T KOG0292|consen 88 ----TLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKC----IAV------------LTGHNHYVMCAQFHPT 146 (1202)
T ss_pred ----hhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCce----EEE------------EecCceEEEeeccCCc
Confidence 678999999999999998 7999999999999999988876 333 5666688999999999
Q ss_pred CCEEEEEe-CCeEEEEEccCCCCCeeeeec----cccccccccccc-ccCCc---------cceeeEEEeCCCCEEEEEe
Q 010287 352 GRHILSRD-YMTLKLWDINMDSGPVATFQV----HEHLRPKLCDLY-ENDSI---------FDKFECCLSGDGGRVATGS 416 (513)
Q Consensus 352 ~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~---------~~v~~~~~s~~~~~l~~~~ 416 (513)
...+++++ |.+|+|||+.- -+.-..-.+ +........+++ ..+++ ++|.-++|+|.-..+++|+
T Consensus 147 EDlIVSaSLDQTVRVWDisG-LRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~ 225 (1202)
T KOG0292|consen 147 EDLIVSASLDQTVRVWDISG-LRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA 225 (1202)
T ss_pred cceEEEecccceEEEEeecc-hhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC
Confidence 99999988 59999999862 110000000 000000000111 11111 2466899999999999999
Q ss_pred CCCcEEEEecCCCCc-cceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeC
Q 010287 417 YSNLFRVFGCSEGSA-ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP 495 (513)
Q Consensus 417 ~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 495 (513)
+|..|++|.+...+. +..+..+|.++|.++.|+|...++++.|+|+.|++ |+..+..-......-.++-..++-||
T Consensus 226 DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirV---wDm~kRt~v~tfrrendRFW~laahP 302 (1202)
T KOG0292|consen 226 DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRV---WDMTKRTSVQTFRRENDRFWILAAHP 302 (1202)
T ss_pred CcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEE---EecccccceeeeeccCCeEEEEEecC
Confidence 999999999875432 34677899999999999999999999999999999 65553222222222367889999999
Q ss_pred CCCEEEEEcCCcEEEEe
Q 010287 496 SENSIACAASNSLYMYY 512 (513)
Q Consensus 496 ~~~~la~~~~~~~~i~~ 512 (513)
..+++|.|.|+|+.+|.
T Consensus 303 ~lNLfAAgHDsGm~VFk 319 (1202)
T KOG0292|consen 303 ELNLFAAGHDSGMIVFK 319 (1202)
T ss_pred CcceeeeecCCceEEEE
Confidence 99999999999999984
No 62
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4e-30 Score=205.62 Aligned_cols=280 Identities=18% Similarity=0.244 Sum_probs=217.1
Q ss_pred EEEEEcCC-CCEEEeec-------CCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 39 SAIEFDKS-GDHLATGD-------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 39 ~~v~~sp~-g~~latg~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
.++.|||- ..+||++. .+|++.|-++.+.+.+ .+ ..+.+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi-----------------------~e----------~~s~d 58 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGI-----------------------QE----------CQSYD 58 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCe-----------------------EE----------EEeee
Confidence 67899995 44554443 3678999987644322 11 22333
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
.++.+..++|+++.+ +.+++++.||++++||+.... ..
T Consensus 59 ~~D~LfdV~Wse~~e-~~~~~a~GDGSLrl~d~~~~s-~P---------------------------------------- 96 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHE-NQVIAASGDGSLRLFDLTMPS-KP---------------------------------------- 96 (311)
T ss_pred cccceeEeeecCCCc-ceEEEEecCceEEEeccCCCC-cc----------------------------------------
Confidence 348899999998665 588899999999999953321 00
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CCEEEEE-cCCeEEEEEcCCCcceee
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~vwd~~~~~~~~~ 268 (513)
+. .++.|..+|.++.|++. .+.++++ -|++|++|+...++...
T Consensus 97 ---------------------------------i~-~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~- 141 (311)
T KOG0277|consen 97 ---------------------------------IH-KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ- 141 (311)
T ss_pred ---------------------------------hh-HHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE-
Confidence 00 14688899999999984 5556666 59999999998666543
Q ss_pred ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 348 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 348 (513)
++.+|...|...+|+|..+++|++++.|+..++||++.... ...+ ..|...+.++.|
T Consensus 142 -------Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk----~~~i------------~ah~~Eil~cdw 198 (311)
T KOG0277|consen 142 -------TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK----FMSI------------EAHNSEILCCDW 198 (311)
T ss_pred -------eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc----eeEE------------EeccceeEeecc
Confidence 67899999999999999889999999999999999986532 1223 334578999999
Q ss_pred ee-cCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC-CEEEEEeCCCcEEEEe
Q 010287 349 AR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFG 425 (513)
Q Consensus 349 sp-~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd 425 (513)
+. +...+++|+ |+.|++||+++-..++..+.+|.-. |..++|||.. ..|++++.|-+++|||
T Consensus 199 ~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A---------------VRkvk~Sph~~~lLaSasYDmT~riw~ 263 (311)
T KOG0277|consen 199 SKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA---------------VRKVKFSPHHASLLASASYDMTVRIWD 263 (311)
T ss_pred cccCCcEEEecCCCceEEEEehhhccccceeecCCceE---------------EEEEecCcchhhHhhhccccceEEecc
Confidence 98 556777766 5999999999878888999888876 4489999965 5789999999999999
Q ss_pred cCCCCccceeecCCCCceeEEEEcCC-CCceeeecCCCeEEE
Q 010287 426 CSEGSAESTTLEASKNPMRRQVQTPS-RPSRPLGSLSGVVRR 466 (513)
Q Consensus 426 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~ 466 (513)
...+...+.+.+.|.+-+..+.|++- ..++|+++.|+.+.+
T Consensus 264 ~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~V 305 (311)
T KOG0277|consen 264 PERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYV 305 (311)
T ss_pred cccchhhhhhhhccceEEeccccccccCceeeecccccceee
Confidence 98765666788899999999999864 568999999999998
No 63
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.3e-30 Score=218.65 Aligned_cols=280 Identities=14% Similarity=0.155 Sum_probs=215.1
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
+.|.-+.| +++|++||+++.|.+..+|++........
T Consensus 225 dEVWfl~F--S~nGkyLAsaSkD~Taiiw~v~~d~~~kl----------------------------------------- 261 (519)
T KOG0293|consen 225 DEVWFLQF--SHNGKYLASASKDSTAIIWIVVYDVHFKL----------------------------------------- 261 (519)
T ss_pred CcEEEEEE--cCCCeeEeeccCCceEEEEEEecCcceee-----------------------------------------
Confidence 88999999 56999999999999999999865421110
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
...+.+|..+|..+.|+||.++++++ .+..+.+||..++......
T Consensus 262 --------------------------------~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y-- 307 (519)
T KOG0293|consen 262 --------------------------------KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY-- 307 (519)
T ss_pred --------------------------------eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc--
Confidence 11246899999999999999999998 5888999999988754321
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 351 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 351 (513)
-.++...+.+++|.||+ ..|++|+.|+.|..||+.... ...|++-.. ..|.+++.++|
T Consensus 308 -----~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~-----~~~W~gvr~-----------~~v~dlait~D 365 (519)
T KOG0293|consen 308 -----PSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNI-----LGNWEGVRD-----------PKVHDLAITYD 365 (519)
T ss_pred -----ccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcch-----hhccccccc-----------ceeEEEEEcCC
Confidence 12356889999999999 899999999999999986433 344554433 36999999999
Q ss_pred CCEEEEE-eCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287 352 GRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 430 (513)
Q Consensus 352 ~~~l~~~-~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 430 (513)
|+++++. .|..|++|+... ......+..+.. +++.++|.|++++++.-.+..+++||++..
T Consensus 366 gk~vl~v~~d~~i~l~~~e~-~~dr~lise~~~----------------its~~iS~d~k~~LvnL~~qei~LWDl~e~- 427 (519)
T KOG0293|consen 366 GKYVLLVTVDKKIRLYNREA-RVDRGLISEEQP----------------ITSFSISKDGKLALVNLQDQEIHLWDLEEN- 427 (519)
T ss_pred CcEEEEEecccceeeechhh-hhhhccccccCc----------------eeEEEEcCCCcEEEEEcccCeeEEeecchh-
Confidence 9998874 569999999874 332223322222 568999999999999999999999999954
Q ss_pred ccceeecCCCCc---eeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCC-EEEEEc-C
Q 010287 431 AESTTLEASKNP---MRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN-SIACAA-S 505 (513)
Q Consensus 431 ~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~-~la~~~-~ 505 (513)
.+...+.+|... ++++.--.+..++++||+|+.|+| |............+|+..|++++|+|... ++|+|+ |
T Consensus 428 ~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyI---Whr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDD 504 (519)
T KOG0293|consen 428 KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYI---WHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDD 504 (519)
T ss_pred hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEE---EEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCC
Confidence 555777788654 333333456689999999999999 43333344456667999999999999965 578887 6
Q ss_pred CcEEEEe
Q 010287 506 NSLYMYY 512 (513)
Q Consensus 506 ~~~~i~~ 512 (513)
++++||.
T Consensus 505 gtIRIWg 511 (519)
T KOG0293|consen 505 GTIRIWG 511 (519)
T ss_pred CeEEEec
Confidence 7788884
No 64
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=5.5e-29 Score=225.93 Aligned_cols=420 Identities=15% Similarity=0.179 Sum_probs=283.7
Q ss_pred cccccccccEEEEEEcCCCC---EEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCc--------ce--Eecc
Q 010287 29 GEEVQEVDIISAIEFDKSGD---HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE--------FR--YKTE 95 (513)
Q Consensus 29 ~~~~~h~~~V~~v~~sp~g~---~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~~~ 95 (513)
.+..+|.++|.+++|..-+. +||++|.|..||||.+.-........+..... ..+..|. |+ +..-
T Consensus 185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t--~~~~~~~f~~l~~i~~~is~eal 262 (764)
T KOG1063|consen 185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLT--TLSNLPVFMILEEIQYRISFEAL 262 (764)
T ss_pred EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccc--cccCCceeeeeeeEEEEEehhhh
Confidence 35779999999999987644 89999999999999976444222111110000 0000111 11 1123
Q ss_pred ccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCccccc
Q 010287 96 FQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAI 175 (513)
Q Consensus 96 ~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (513)
+.||+ +.|+++.|+| .+..|++++.|+++.+|...+..-+....+........+.| . -
T Consensus 263 l~GHe------------DWV~sv~W~p--~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~G-F-------~ 320 (764)
T KOG1063|consen 263 LMGHE------------DWVYSVWWHP--EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGG-F-------W 320 (764)
T ss_pred hcCcc------------cceEEEEEcc--chhhheecccCcceEEEecCCccceEEEEEEeecccccccc-e-------e
Confidence 45787 9999999966 66689999999999999987764444433332221100001 1 1
Q ss_pred CceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCe
Q 010287 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLR 254 (513)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~ 254 (513)
.-.|+|++..+ +.-+..|.+++|....... -.......||.+.|.+++|+|.|++|++. .|-+
T Consensus 321 g~lw~~n~~~i------------i~~g~~Gg~hlWkt~d~~~----w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQT 384 (764)
T KOG1063|consen 321 GGLWSPNSNVI------------IAHGRTGGFHLWKTKDKTF----WTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQT 384 (764)
T ss_pred eEEEcCCCCEE------------EEecccCcEEEEeccCccc----eeeccccccccccceeeeecCCCCEEEEeccccc
Confidence 33466666544 6667888999998221111 11222357999999999999999999997 6999
Q ss_pred EEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccc------------------
Q 010287 255 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL------------------ 316 (513)
Q Consensus 255 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------------------ 316 (513)
-+++-....+.. ..++ ..-+-|...++|+++-+.. ..|++|.....+|+|+....-.
T Consensus 385 TRlFa~wg~q~~--wHEi--aRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p 459 (764)
T KOG1063|consen 385 TRLFARWGRQQE--WHEI--ARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELP 459 (764)
T ss_pred eeeecccccccc--eeee--cccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcc
Confidence 999976622221 1111 1234588889999998864 7899999999999998753110
Q ss_pred ----------cccccee------------eccc---------cCCC-----------CccccccccccEEEEEEeecCCE
Q 010287 317 ----------CDTHSKL------------FEEQ---------EAPG-----------TRSFFTEIIASISDIKFARNGRH 354 (513)
Q Consensus 317 ----------~~~~~~~------------~~~~---------~~~~-----------~~~~~~~~~~~v~~i~~sp~~~~ 354 (513)
..+.... .+.. ..|. ....+.||...|.+++.+|++.+
T Consensus 460 ~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnl 539 (764)
T KOG1063|consen 460 DGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNL 539 (764)
T ss_pred cccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCE
Confidence 0000000 0000 0000 01124679999999999999999
Q ss_pred EEEEeC------CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287 355 ILSRDY------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 428 (513)
Q Consensus 355 l~~~~~------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 428 (513)
++++.. ..|++|+..+ -...+.+.+|.-. |+.++||||+++|++.+.|.++.+|....
T Consensus 540 iASaCKS~~~ehAvI~lw~t~~-W~~~~~L~~HsLT---------------VT~l~FSpdg~~LLsvsRDRt~sl~~~~~ 603 (764)
T KOG1063|consen 540 IASACKSSLKEHAVIRLWNTAN-WLQVQELEGHSLT---------------VTRLAFSPDGRYLLSVSRDRTVSLYEVQE 603 (764)
T ss_pred EeehhhhCCccceEEEEEeccc-hhhhheecccceE---------------EEEEEECCCCcEEEEeecCceEEeeeeec
Confidence 998531 6799999986 6677788888865 67999999999999999999999998765
Q ss_pred CCcc---ceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCcc---ccC-CccccccCCeeEEEEeCCCC---
Q 010287 429 GSAE---STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSAL---DAN-GNAFDFSMKLLHLAWHPSEN--- 498 (513)
Q Consensus 429 ~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~---~~~-~~~~~~~~~i~~~~~sp~~~--- 498 (513)
.... ...++.|..-|.++.|+|++.+++++|.|..|++ |..... ... .....++..|++++|.|--.
T Consensus 604 ~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkV---W~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~ 680 (764)
T KOG1063|consen 604 DIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKV---WEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEK 680 (764)
T ss_pred ccchhhhhccccccceEEEEcccCcccceeEEecCCceEEE---EeccCchhhhhhhhchhccCCceeeEEeeccccccc
Confidence 4222 2447899999999999999999999999999999 322211 111 14567899999999987632
Q ss_pred --EEEEEc-CCcEEEEe
Q 010287 499 --SIACAA-SNSLYMYY 512 (513)
Q Consensus 499 --~la~~~-~~~~~i~~ 512 (513)
.+|+|- .+.|++|.
T Consensus 681 ~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 681 GDVVAVGLEKGEIVLWR 697 (764)
T ss_pred cceEEEEecccEEEEEe
Confidence 466776 55566664
No 65
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=1.7e-28 Score=227.27 Aligned_cols=381 Identities=11% Similarity=0.142 Sum_probs=284.4
Q ss_pred EEEEEEcCC--CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287 38 ISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (513)
Q Consensus 38 V~~v~~sp~--g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 115 (513)
|+++. +|+ =+.|+.|+.+|.+.||++.+++. ..+++++. ..|
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~-----------------------v~~f~~~~------------s~I 205 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKV-----------------------VYTFQEFF------------SRI 205 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEeccCcE-----------------------EEEecccc------------cce
Confidence 88775 676 46789999999999999998884 36778887 889
Q ss_pred eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCC
Q 010287 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (513)
Q Consensus 116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 195 (513)
+++.=+|--| .++.|..+|+|.+++++.++....++... ...+.++|..||..+
T Consensus 206 T~ieqsPaLD--VVaiG~~~G~ViifNlK~dkil~sFk~d~---------------g~VtslSFrtDG~p~--------- 259 (910)
T KOG1539|consen 206 TAIEQSPALD--VVAIGLENGTVIIFNLKFDKILMSFKQDW---------------GRVTSLSFRTDGNPL--------- 259 (910)
T ss_pred eEeccCCcce--EEEEeccCceEEEEEcccCcEEEEEEccc---------------cceeEEEeccCCCee---------
Confidence 9999877555 89999999999999999998877766542 233477888888865
Q ss_pred CCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCc
Q 010287 196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 274 (513)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~ 274 (513)
.++++..|.+.+||+........ ....|.+.|....|.|....++++ .|+.+++|-.+++....+++
T Consensus 260 --las~~~~G~m~~wDLe~kkl~~v------~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~L---- 327 (910)
T KOG1539|consen 260 --LASGRSNGDMAFWDLEKKKLINV------TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLL---- 327 (910)
T ss_pred --EEeccCCceEEEEEcCCCeeeee------eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhe----
Confidence 35666779999999987655322 235888889999999999999987 69999999777655443332
Q ss_pred cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccc------------------------------------
Q 010287 275 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD------------------------------------ 318 (513)
Q Consensus 275 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~------------------------------------ 318 (513)
+...+|..+..++.|.......+.+++.|++.+.+++.......
T Consensus 328 R~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~R 407 (910)
T KOG1539|consen 328 RSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAR 407 (910)
T ss_pred eeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccch
Confidence 23478999999999995444999999999999888765311100
Q ss_pred --------------ccceeeccccCCCCcc-----ccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeee
Q 010287 319 --------------THSKLFEEQEAPGTRS-----FFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATF 378 (513)
Q Consensus 319 --------------~~~~~~~~~~~~~~~~-----~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~ 378 (513)
...++|.-.+...... .++.....+++++.++.|.+.+.|.. |.|.+|++++ +.....+
T Consensus 408 E~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS-Gi~r~sf 486 (910)
T KOG1539|consen 408 EKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS-GIHRKSF 486 (910)
T ss_pred hhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc-Ceeeccc
Confidence 0011111111110000 01112367899999999999999987 9999999996 6666666
Q ss_pred ---ecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC-------------------------
Q 010287 379 ---QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS------------------------- 430 (513)
Q Consensus 379 ---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~------------------------- 430 (513)
+.|... |+.++...-++.+++++.+|.+.+||.....
T Consensus 487 ~~~~ah~~~---------------V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~ 551 (910)
T KOG1539|consen 487 GDSPAHKGE---------------VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAI 551 (910)
T ss_pred ccCccccCc---------------eeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhh
Confidence 345544 5688888888999999999999999988651
Q ss_pred ---------------ccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeC
Q 010287 431 ---------------AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP 495 (513)
Q Consensus 431 ---------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 495 (513)
+....+.+|.+.++++.|||+|+||++++.|+.|++ |++.. ....+.+....+++++.|||
T Consensus 552 ~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~---wDlpt-~~lID~~~vd~~~~sls~SP 627 (910)
T KOG1539|consen 552 ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRT---WDLPT-GTLIDGLLVDSPCTSLSFSP 627 (910)
T ss_pred hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEE---EeccC-cceeeeEecCCcceeeEECC
Confidence 111223379999999999999999999999999999 65542 12223344578999999999
Q ss_pred CCCEEEEEc--CCcEEEEe
Q 010287 496 SENSIACAA--SNSLYMYY 512 (513)
Q Consensus 496 ~~~~la~~~--~~~~~i~~ 512 (513)
+|.+||++. .+++++|.
T Consensus 628 ngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 628 NGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred CCCEEEEEEecCceEEEEE
Confidence 999999887 47999985
No 66
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=9.1e-31 Score=219.68 Aligned_cols=290 Identities=20% Similarity=0.266 Sum_probs=224.7
Q ss_pred ccceeccccccccccccccEEEEEEcCCC-CEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEecccc
Q 010287 19 FSQVFGERTAGEEVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ 97 (513)
Q Consensus 19 ~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (513)
+-++|-.+......+|.+.|.|++=+|.. ..+|+|+.||.|+|||+..... ...|.
T Consensus 50 leR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~-----------------------~~~f~ 106 (433)
T KOG0268|consen 50 LERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC-----------------------IRTFK 106 (433)
T ss_pred HHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh-----------------------hheee
Confidence 34555566666778999999999999986 7899999999999999876553 35688
Q ss_pred CCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCc
Q 010287 98 SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (513)
Q Consensus 98 ~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (513)
+|. +.|..|++. . ..+++++.|++|+.|.++... ... +
T Consensus 107 AH~------------G~V~Gi~v~--~--~~~~tvgdDKtvK~wk~~~~p-~~t--i----------------------- 144 (433)
T KOG0268|consen 107 AHE------------GLVRGICVT--Q--TSFFTVGDDKTVKQWKIDGPP-LHT--I----------------------- 144 (433)
T ss_pred ccc------------CceeeEEec--c--cceEEecCCcceeeeeccCCc-cee--e-----------------------
Confidence 898 889999994 2 579999999999999987631 110 0
Q ss_pred eeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEE
Q 010287 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINL 257 (513)
Q Consensus 178 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~v 257 (513)
.-...+..+.-+..+..+++++ ..|-|
T Consensus 145 ----------------------------------------------------lg~s~~~gIdh~~~~~~FaTcG-e~i~I 171 (433)
T KOG0268|consen 145 ----------------------------------------------------LGKSVYLGIDHHRKNSVFATCG-EQIDI 171 (433)
T ss_pred ----------------------------------------------------eccccccccccccccccccccC-ceeee
Confidence 0012244455555566777764 35889
Q ss_pred EEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccc
Q 010287 258 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT 337 (513)
Q Consensus 258 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (513)
||.+...... .+......|.++.|+|....+|++|..|+.|.+||+++.....+.+..+
T Consensus 172 WD~~R~~Pv~--------smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m------------- 230 (433)
T KOG0268|consen 172 WDEQRDNPVS--------SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM------------- 230 (433)
T ss_pred cccccCCccc--------eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec-------------
Confidence 9997555432 4566678899999999987889999999999999999988754433222
Q ss_pred cccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe
Q 010287 338 EIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 416 (513)
Q Consensus 338 ~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 416 (513)
.-+.|+|+|.+-.+++|++ ..++.||++.-..++.....|... |++++|||.|+-+++||
T Consensus 231 ----RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsA---------------V~dVdfsptG~Efvsgs 291 (433)
T KOG0268|consen 231 ----RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSA---------------VMDVDFSPTGQEFVSGS 291 (433)
T ss_pred ----cccceecCccccceeeccccccceehhhhhhcccchhhccccee---------------EEEeccCCCcchhcccc
Confidence 2467999997767777775 999999999877788888877765 67999999999999999
Q ss_pred CCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 417 YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 417 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.|.+|+||....+.....-.......|.++.|+.|.+++++||.|+.|++
T Consensus 292 yDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRl 341 (433)
T KOG0268|consen 292 YDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRL 341 (433)
T ss_pred ccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceee
Confidence 99999999988763332222233456889999999999999999999999
No 67
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.1e-28 Score=198.15 Aligned_cols=277 Identities=16% Similarity=0.252 Sum_probs=218.9
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
+..+|...|.+|+|+.+|..||+|+.|+++.+|++...... ......+|.
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~---------------------~~~~~~gh~--------- 64 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR---------------------KELVYRGHT--------- 64 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh---------------------hhhcccCCC---------
Confidence 45678999999999999999999999999999998765431 223467888
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
+.|-.++|.|..+ ..|++++.|++|++||++.+++........
T Consensus 65 ---~svdql~w~~~~~-d~~atas~dk~ir~wd~r~~k~~~~i~~~~--------------------------------- 107 (313)
T KOG1407|consen 65 ---DSVDQLCWDPKHP-DLFATASGDKTIRIWDIRSGKCTARIETKG--------------------------------- 107 (313)
T ss_pred ---cchhhheeCCCCC-cceEEecCCceEEEEEeccCcEEEEeeccC---------------------------------
Confidence 8899999988554 589999999999999999988665433211
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~ 268 (513)
.=.-+.|+|+|++++.+ .|..|.+.|.++.+...+
T Consensus 108 --------------------------------------------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~ 143 (313)
T KOG1407|consen 108 --------------------------------------------ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE 143 (313)
T ss_pred --------------------------------------------cceEEEEcCCCCEEEEecCcccEEEEEecccceeeh
Confidence 11247799999999999 699999999986553321
Q ss_pred ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 348 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 348 (513)
......+..+.|+-++ .+|+.....|.|.|......+. +.. ++.|.....||.|
T Consensus 144 ---------~~~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLkp----v~s------------i~AH~snCicI~f 197 (313)
T KOG1407|consen 144 ---------EQFKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLKP----VQS------------IKAHPSNCICIEF 197 (313)
T ss_pred ---------hcccceeeeeeecCCC-CEEEEecCCceEEEEecccccc----ccc------------cccCCcceEEEEE
Confidence 2234567888999766 7777777789999988765443 222 4566688999999
Q ss_pred eecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287 349 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 427 (513)
Q Consensus 349 sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 427 (513)
+|+|+++++|+ |..+.+||+.. .-+++.+..++.+ |..+.||.||++||+|++|..|-|=+.+
T Consensus 198 ~p~GryfA~GsADAlvSLWD~~E-LiC~R~isRldwp---------------VRTlSFS~dg~~lASaSEDh~IDIA~ve 261 (313)
T KOG1407|consen 198 DPDGRYFATGSADALVSLWDVDE-LICERCISRLDWP---------------VRTLSFSHDGRMLASASEDHFIDIAEVE 261 (313)
T ss_pred CCCCceEeeccccceeeccChhH-hhhheeeccccCc---------------eEEEEeccCcceeeccCccceEEeEecc
Confidence 99999999987 49999999984 7777888777765 4489999999999999999999999999
Q ss_pred CCCccceeecCCCCceeEEEEcCCCCceeeecCC
Q 010287 428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 461 (513)
Q Consensus 428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 461 (513)
+|.+. ..+ .+..+...++|+|...+||.+..|
T Consensus 262 tGd~~-~eI-~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 262 TGDRV-WEI-PCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cCCeE-EEe-eccCCceeEEecCCCceeeEEecC
Confidence 88443 222 356788899999999999987655
No 68
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=1.2e-28 Score=223.70 Aligned_cols=417 Identities=15% Similarity=0.182 Sum_probs=262.7
Q ss_pred ccccccccEEEEEEcCCCC---EEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccc
Q 010287 30 EEVQEVDIISAIEFDKSGD---HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~---~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (513)
...+|..+|+|+.|-|+.+ ++++|+.||+|++|.+..... .....+++|.
T Consensus 49 ~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~---------------------~~i~~~~g~~------ 101 (764)
T KOG1063|consen 49 TLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYL---------------------IKIYTIQGHC------ 101 (764)
T ss_pred eccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehhe---------------------EEEEeecCcc------
Confidence 4668999999999999877 899999999999999884332 2445677777
Q ss_pred ccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccC-CCc
Q 010287 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN-GGC 185 (513)
Q Consensus 107 ~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~ 185 (513)
+.++++.. ......+.+.|+++.+||.+..+......+.+... -..+..++..++ +..
T Consensus 102 --------~~~~cv~a--~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k-----------~~ipLcL~~~~~~~~~ 160 (764)
T KOG1063|consen 102 --------KECVCVVA--RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIK-----------EAIPLCLAALKNNKTF 160 (764)
T ss_pred --------eeEEEEEe--eeeEEEeeccCceEEEeecCCCceeeehheehhhh-----------hHhhHHHhhhccCCcE
Confidence 44555532 21122233789999999996655322222222211 012223344442 222
Q ss_pred cccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCC---EEEEE-cCCeEEEEEcC
Q 010287 186 GERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE---TFISA-DDLRINLWNLE 261 (513)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~s~-~d~~i~vwd~~ 261 (513)
+ .+.++.+..+.++.-... .-.+...+.||.+.|.+++|...+. +|+++ .|..|++|.+.
T Consensus 161 l-----------la~Ggs~~~v~~~s~~~d-----~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~ 224 (764)
T KOG1063|consen 161 L-----------LACGGSKFVVDLYSSSAD-----SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIV 224 (764)
T ss_pred E-----------EEecCcceEEEEeccCCc-----ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEE
Confidence 1 122333334444332211 1122233689999999999987543 56666 69999999876
Q ss_pred CCcce--------------------eeecccC--c-cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcc---
Q 010287 262 ISNQS--------------------FNIVDVK--P-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA--- 315 (513)
Q Consensus 262 ~~~~~--------------------~~~~~~~--~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--- 315 (513)
-.... ..-+..+ - .-+.+|.+.|+++.|+|.+ ..|++++.|.++.+|......
T Consensus 225 ~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGiW 303 (764)
T KOG1063|consen 225 LGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGIW 303 (764)
T ss_pred ecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccch-hhheecccCcceEEEecCCccceE
Confidence 43300 0000000 0 1245999999999999998 899999999999999765431
Q ss_pred --------ccc-----------------------ccceeecc--ccCCCCccccccccccEEEEEEeecCCEEEEEe-CC
Q 010287 316 --------LCD-----------------------THSKLFEE--QEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YM 361 (513)
Q Consensus 316 --------~~~-----------------------~~~~~~~~--~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~ 361 (513)
... .-.+.+.. ...-.......||...|.+++|+|.|++|++.+ |.
T Consensus 304 v~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQ 383 (764)
T KOG1063|consen 304 VDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQ 383 (764)
T ss_pred EEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEecccc
Confidence 100 00122221 111122345689999999999999999999854 55
Q ss_pred eEEEEEcc--------------------C--------------CCCCeeeeecccccc----------------------
Q 010287 362 TLKLWDIN--------------------M--------------DSGPVATFQVHEHLR---------------------- 385 (513)
Q Consensus 362 ~v~iwd~~--------------------~--------------~~~~~~~~~~~~~~~---------------------- 385 (513)
+-++|-.- . +.+.++.+..+....
T Consensus 384 TTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~ 463 (764)
T KOG1063|consen 384 TTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGAN 463 (764)
T ss_pred ceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccc
Confidence 55554321 0 001111111100000
Q ss_pred -------------------------------ccccccc---------------ccCC----ccceeeEEEeCCCCEEEEE
Q 010287 386 -------------------------------PKLCDLY---------------ENDS----IFDKFECCLSGDGGRVATG 415 (513)
Q Consensus 386 -------------------------------~~~~~~~---------------~~~~----~~~v~~~~~s~~~~~l~~~ 415 (513)
...+.+. +... -+.|++++.+|+++++|++
T Consensus 464 VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASa 543 (764)
T KOG1063|consen 464 VPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASA 543 (764)
T ss_pred cccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeeh
Confidence 0000000 0000 1368899999999999988
Q ss_pred eCC-----CcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCc-cccccCCee
Q 010287 416 SYS-----NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGN-AFDFSMKLL 489 (513)
Q Consensus 416 ~~d-----g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~~~~i~ 489 (513)
... -.|++|+..+.. ..+.+++|.-.|+.++|+||+++|++.+.|+++.+.+..+....+.... ...|+.-|.
T Consensus 544 CKS~~~ehAvI~lw~t~~W~-~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIW 622 (764)
T KOG1063|consen 544 CKSSLKEHAVIRLWNTANWL-QVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIW 622 (764)
T ss_pred hhhCCccceEEEEEeccchh-hhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEE
Confidence 754 358999999874 4468999999999999999999999999999999933332222222222 346899999
Q ss_pred EEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 490 HLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 490 ~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
+++|+|++.++|++| |..+++|.
T Consensus 623 dcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 623 DCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred EcccCcccceeEEecCCceEEEEe
Confidence 999999999999999 66777774
No 69
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=4.7e-28 Score=198.67 Aligned_cols=279 Identities=17% Similarity=0.228 Sum_probs=213.4
Q ss_pred ccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccc
Q 010287 34 EVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (513)
Q Consensus 34 h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (513)
-.+.|.+|+|||. ..+++.||.||+||+|+++..... .-+....|+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~---------------------~~ka~~~~~------------ 72 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL---------------------VPKAQQSHD------------ 72 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcc---------------------cchhhhccC------------
Confidence 3689999999994 667779999999999999864221 012344555
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
++|.+++| +.+|..+++++.|+.+++||+.+++...
T Consensus 73 ~PvL~v~W--sddgskVf~g~~Dk~~k~wDL~S~Q~~~------------------------------------------ 108 (347)
T KOG0647|consen 73 GPVLDVCW--SDDGSKVFSGGCDKQAKLWDLASGQVSQ------------------------------------------ 108 (347)
T ss_pred CCeEEEEE--ccCCceEEeeccCCceEEEEccCCCeee------------------------------------------
Confidence 99999999 6688999999999999999999986443
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCC--EEEEE-cCCeEEEEEcCCCcceeee
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE--TFISA-DDLRINLWNLEISNQSFNI 269 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~-~d~~i~vwd~~~~~~~~~~ 269 (513)
...|..+|.++.|-+... .|++| -|++|+.||.+.......+
T Consensus 109 -----------------------------------v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~ 153 (347)
T KOG0647|consen 109 -----------------------------------VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL 153 (347)
T ss_pred -----------------------------------eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee
Confidence 257888899999977544 88999 5999999999966654432
Q ss_pred cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287 270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 349 (513)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 349 (513)
...+.+.++..-. .+++.+..++.|.+|+++++....+ ..+.+ .+-.++||+..
T Consensus 154 ---------~LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k------~~~Sp--------Lk~Q~R~va~f 207 (347)
T KOG0647|consen 154 ---------QLPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFK------RIESP--------LKWQTRCVACF 207 (347)
T ss_pred ---------eccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhh------hhcCc--------ccceeeEEEEE
Confidence 1245566665543 4788889999999999987654221 11111 12468999999
Q ss_pred ecCCEEEEEe-CCeEEEEEccCCC--CCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEec
Q 010287 350 RNGRHILSRD-YMTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 426 (513)
Q Consensus 350 p~~~~l~~~~-~~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 426 (513)
+|....+.|+ +|.+.|..+.. . +.-.+++.|..... .. +.++.|.+++|+|.-..|+|++.||++.+||-
T Consensus 208 ~d~~~~alGsiEGrv~iq~id~-~~~~~nFtFkCHR~~~~-~~-----~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 208 QDKDGFALGSIEGRVAIQYIDD-PNPKDNFTFKCHRSTNS-VN-----DDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDK 280 (347)
T ss_pred ecCCceEeeeecceEEEEecCC-CCccCceeEEEeccCCC-CC-----CceEEecceEeecccceEEEecCCceEEEecc
Confidence 9888778777 49999999885 3 44566777775322 11 24667889999999999999999999999998
Q ss_pred CCCCccceeecCCCCceeEEEEcCCCCceeee
Q 010287 427 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 458 (513)
Q Consensus 427 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 458 (513)
... ..+.+.+.|..||.+..|+.+|.++|.+
T Consensus 281 dar-~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 281 DAR-TKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred hhh-hhhhccCcCCCccceeEecCCCCEEEEE
Confidence 766 4457778899999999999999998765
No 70
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-28 Score=215.42 Aligned_cols=279 Identities=16% Similarity=0.278 Sum_probs=218.6
Q ss_pred cccccEEEEEEcCCCC-EEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccc
Q 010287 33 QEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (513)
Q Consensus 33 ~h~~~V~~v~~sp~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (513)
...+.|++++|||... -+|+.+. -++.||+..+.... +.+.-..
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~-----------------------k~~srFk----------- 68 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVR-----------------------KTFSRFK----------- 68 (487)
T ss_pred cccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhh-----------------------hhHHhhc-----------
Confidence 3458999999999743 3444443 37999997665431 2222222
Q ss_pred cccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccC
Q 010287 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (513)
Q Consensus 112 ~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 191 (513)
+.|.++.| ..||.+|++|...|.|+++|+.+......
T Consensus 69 -~~v~s~~f--R~DG~LlaaGD~sG~V~vfD~k~r~iLR~---------------------------------------- 105 (487)
T KOG0310|consen 69 -DVVYSVDF--RSDGRLLAAGDESGHVKVFDMKSRVILRQ---------------------------------------- 105 (487)
T ss_pred -cceeEEEe--ecCCeEEEccCCcCcEEEeccccHHHHHH----------------------------------------
Confidence 77999999 45899999999999999999655322111
Q ss_pred CCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCC-EEEEE-cCCeEEEEEcCCCcceeee
Q 010287 192 CASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNI 269 (513)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~vwd~~~~~~~~~~ 269 (513)
+.+|..++..+.|+|+++ .|++| +|+.+++||+.+... ..
T Consensus 106 ------------------------------------~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~ 147 (487)
T KOG0310|consen 106 ------------------------------------LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QA 147 (487)
T ss_pred ------------------------------------HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EE
Confidence 468889999999999655 55556 699999999986653 21
Q ss_pred cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287 270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 349 (513)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 349 (513)
.+.+|++.|.|.+|+|..+.++++|+.||.|++||++.... .+..+ .|..+|..+.+-
T Consensus 148 ------~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~---~v~el-------------nhg~pVe~vl~l 205 (487)
T KOG0310|consen 148 ------ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS---RVVEL-------------NHGCPVESVLAL 205 (487)
T ss_pred ------EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc---eeEEe-------------cCCCceeeEEEc
Confidence 67899999999999998778999999999999999987531 12332 244789999999
Q ss_pred ecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 350 RNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 350 p~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
|.|..+++++...|++||+..+++.+..+..|... |+++++..++..|++|+-|+.+++||+.+.
T Consensus 206 psgs~iasAgGn~vkVWDl~~G~qll~~~~~H~Kt---------------VTcL~l~s~~~rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 206 PSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKT---------------VTCLRLASDSTRLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred CCCCEEEEcCCCeEEEEEecCCceehhhhhcccce---------------EEEEEeecCCceEeecccccceEEEEccce
Confidence 99999999998999999999766666666656655 679999999999999999999999997655
Q ss_pred CccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 430 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 430 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
+....+ .-.+||.+++.+|++..++.|..||.+.+
T Consensus 271 -Kvv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 271 -KVVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred -EEEEee-ecccceeeEEecCCCceEEEecccceeee
Confidence 333333 34578999999999999999999999988
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=9.8e-30 Score=217.06 Aligned_cols=284 Identities=18% Similarity=0.250 Sum_probs=223.7
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
..-.|...|..+.|-++...|++|+.|..|.+|++...+. .+...+.|..
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~---------------------~~~~tLaGs~--------- 219 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS---------------------ELISTLAGSL--------- 219 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchh---------------------hhhhhhhccC---------
Confidence 3446899999999999989999999999999999866552 1334566666
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
+.|+++.| ..++.++++++.|+.+++|++...+....
T Consensus 220 ---g~it~~d~--d~~~~~~iAas~d~~~r~Wnvd~~r~~~T-------------------------------------- 256 (459)
T KOG0288|consen 220 ---GNITSIDF--DSDNKHVIAASNDKNLRLWNVDSLRLRHT-------------------------------------- 256 (459)
T ss_pred ---CCcceeee--cCCCceEEeecCCCceeeeeccchhhhhh--------------------------------------
Confidence 78999999 66888999999999999999988764432
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~ 268 (513)
+.+|.+.|+++.|......+++| .|.+|++||+.......+
T Consensus 257 --------------------------------------LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 257 --------------------------------------LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKT 298 (459)
T ss_pred --------------------------------------hcccccceeeehhhccccceeeccccchhhhhhhhhhheecc
Confidence 46899999999998877778888 699999999986443322
Q ss_pred ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 348 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 348 (513)
+ + ..+.+..|+.++ ..+++|-.|+.|++||.++... .+..... +.|+++..
T Consensus 299 ~-------l--~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~----~~sv~~g-------------g~vtSl~l 349 (459)
T KOG0288|consen 299 V-------L--PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADK----TRSVPLG-------------GRVTSLDL 349 (459)
T ss_pred c-------c--ccccccceEecc---eeeeecccccceEEEeccCCce----eeEeecC-------------cceeeEee
Confidence 1 1 234456666653 6799999999999999998765 3333322 57999999
Q ss_pred eecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287 349 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 427 (513)
Q Consensus 349 sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 427 (513)
++++..+.+++ |.++.+.|+++ ......+...... +-.+.+.+.|||++.|+++|+.||.|+||++.
T Consensus 350 s~~g~~lLsssRDdtl~viDlRt-~eI~~~~sA~g~k-----------~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~ 417 (459)
T KOG0288|consen 350 SMDGLELLSSSRDDTLKVIDLRT-KEIRQTFSAEGFK-----------CASDWTRVVFSPDGSYVAAGSADGSVYIWSVF 417 (459)
T ss_pred ccCCeEEeeecCCCceeeeeccc-ccEEEEeeccccc-----------cccccceeEECCCCceeeeccCCCcEEEEEcc
Confidence 99999888876 59999999996 6666666544321 11234589999999999999999999999999
Q ss_pred CCCccceeecCCCC--ceeEEEEcCCCCceeeecCCCeEEE
Q 010287 428 EGSAESTTLEASKN--PMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 428 ~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
+++.+ ..++.... .|.++.|+|.|..|++++.++.+.+
T Consensus 418 tgKlE-~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~l 457 (459)
T KOG0288|consen 418 TGKLE-KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTL 457 (459)
T ss_pred CceEE-EEeccCCCCcceEEEEEcCCCchhhcccCCcceEe
Confidence 88444 45554444 5999999999999999999988877
No 72
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.4e-28 Score=207.83 Aligned_cols=300 Identities=17% Similarity=0.219 Sum_probs=224.3
Q ss_pred ccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCC
Q 010287 105 YLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (513)
Q Consensus 105 ~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 184 (513)
|+.++.|.+.|.++.-. +..+++++.||.+++||........
T Consensus 98 pl~~~~hdDWVSsv~~~----~~~IltgsYDg~~riWd~~Gk~~~~---------------------------------- 139 (423)
T KOG0313|consen 98 PLQCFLHDDWVSSVKGA----SKWILTGSYDGTSRIWDLKGKSIKT---------------------------------- 139 (423)
T ss_pred ccccccchhhhhhhccc----CceEEEeecCCeeEEEecCCceEEE----------------------------------
Confidence 35566667888888873 4699999999999999987653222
Q ss_pred ccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC---CCEEEEE-cCCeEEEEEc
Q 010287 185 CGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---GETFISA-DDLRINLWNL 260 (513)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~-~d~~i~vwd~ 260 (513)
..+|.++|.+++|... ...|+++ .|.++++|.+
T Consensus 140 -------------------------------------------~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 140 -------------------------------------------IVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred -------------------------------------------EecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 3588888988877432 3357777 7999999999
Q ss_pred CCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccc---------cccceeeccccCCC
Q 010287 261 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC---------DTHSKLFEEQEAPG 331 (513)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---------~~~~~~~~~~~~~~ 331 (513)
+.+....... ..-.+|...|.++...+++ ..+++|+.|.++++|+..+.... .+..+.-+......
T Consensus 177 ~~~~~~~~~~----~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 177 NVGENKVKAL----KVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred cCchhhhhHH----hHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence 8776554332 1235999999999999999 99999999999999994321100 00001111112223
Q ss_pred CccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC
Q 010287 332 TRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 410 (513)
Q Consensus 332 ~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 410 (513)
+...+.+|..+|.++.|++ ...+++++ |.+|+.||+.+ +....++.+... ++++..+|..+
T Consensus 252 P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet-g~~~~~~~~~ks----------------l~~i~~~~~~~ 313 (423)
T KOG0313|consen 252 PLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLET-GGLKSTLTTNKS----------------LNCISYSPLSK 313 (423)
T ss_pred ceEEecccccceeeEEEcC-CCceEeecccceEEEEEeec-ccceeeeecCcc----------------eeEeecccccc
Confidence 4456789999999999997 56666766 69999999998 777666665543 34899999999
Q ss_pred EEEEEeCCCcEEEEecCCCCc--cceeecCCCCceeEEEEcCCCCc-eeeecCCCeEEEecCCCCCccc-cCCccccccC
Q 010287 411 RVATGSYSNLFRVFGCSEGSA--ESTTLEASKNPMRRQVQTPSRPS-RPLGSLSGVVRRVKGADNSALD-ANGNAFDFSM 486 (513)
Q Consensus 411 ~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~~ 486 (513)
+|++|+.|..|++||++++.- ..+.+.+|.+.|.++.|+|...+ |++|+.|+++++ |+..... -.....+|..
T Consensus 314 Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~kl---WDvRS~k~plydI~~h~D 390 (423)
T KOG0313|consen 314 LLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKL---WDVRSTKAPLYDIAGHND 390 (423)
T ss_pred eeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEE---EEeccCCCcceeeccCCc
Confidence 999999999999999998643 34788899999999999998775 689999999999 4443222 2334557999
Q ss_pred CeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 487 KLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 487 ~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
.|.++.|+..+ .|++|+ |+.++||.
T Consensus 391 Kvl~vdW~~~~-~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 391 KVLSVDWNEGG-LIVSGGADNKLRIFK 416 (423)
T ss_pred eEEEEeccCCc-eEEeccCcceEEEec
Confidence 99999999754 455554 99999985
No 73
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=6e-28 Score=194.64 Aligned_cols=286 Identities=15% Similarity=0.196 Sum_probs=218.7
Q ss_pred cccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccc
Q 010287 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (513)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (513)
.++||+ .+++.|.| +.+|.+|++++.|.+..||--.+|+..-.
T Consensus 5 ~l~GHE------------RplTqiKy--N~eGDLlFscaKD~~~~vw~s~nGerlGt----------------------- 47 (327)
T KOG0643|consen 5 LLQGHE------------RPLTQIKY--NREGDLLFSCAKDSTPTVWYSLNGERLGT----------------------- 47 (327)
T ss_pred ccccCc------------cccceEEe--cCCCcEEEEecCCCCceEEEecCCceeee-----------------------
Confidence 467888 99999999 66888999999999999998877753321
Q ss_pred cCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCC
Q 010287 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 253 (513)
Q Consensus 175 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~ 253 (513)
..+|.+.|+|+..+.+.+.+++| .|.
T Consensus 48 -----------------------------------------------------y~GHtGavW~~Did~~s~~liTGSAD~ 74 (327)
T KOG0643|consen 48 -----------------------------------------------------YDGHTGAVWCCDIDWDSKHLITGSADQ 74 (327)
T ss_pred -----------------------------------------------------ecCCCceEEEEEecCCcceeeeccccc
Confidence 36999999999999999999999 799
Q ss_pred eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC-----CCcEEEEEcCCccc---ccccceeec
Q 010287 254 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-----KGSIRLIDMRQSAL---CDTHSKLFE 325 (513)
Q Consensus 254 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~~~---~~~~~~~~~ 325 (513)
++++||.++++++... ....+|..+.|++++ ++++.+.. .+.|.++|++.... ...+...+
T Consensus 75 t~kLWDv~tGk~la~~---------k~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI- 143 (327)
T KOG0643|consen 75 TAKLWDVETGKQLATW---------KTNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI- 143 (327)
T ss_pred eeEEEEcCCCcEEEEe---------ecCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe-
Confidence 9999999999877543 246789999999999 77666544 46799999985331 11112222
Q ss_pred cccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEE
Q 010287 326 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 404 (513)
Q Consensus 326 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (513)
..+...++.+-|+|-+++|++|.+ |.|.+||++++.+.+.....|... |+.++
T Consensus 144 -----------~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~---------------Ind~q 197 (327)
T KOG0643|consen 144 -----------PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSK---------------INDLQ 197 (327)
T ss_pred -----------cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccc---------------ccccc
Confidence 223367999999999999999987 999999999855666666667654 45899
Q ss_pred EeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE-----ecCCCCCc-----
Q 010287 405 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR-----VKGADNSA----- 474 (513)
Q Consensus 405 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~-----~~~~~~~~----- 474 (513)
+++|..++++++.|.+-++||..+.. .+.++ ....||++.+++|....++.|+--....+ +.+.-..+
T Consensus 198 ~s~d~T~FiT~s~Dttakl~D~~tl~-v~Kty-~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i 275 (327)
T KOG0643|consen 198 FSRDRTYFITGSKDTTAKLVDVRTLE-VLKTY-TTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLI 275 (327)
T ss_pred ccCCcceEEecccCccceeeecccee-eEEEe-eecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHH
Confidence 99999999999999999999998762 22232 34579999999999888877764433333 11111110
Q ss_pred -cccCCccccccCCeeEEEEeCCCCEEEEEcCCcEE
Q 010287 475 -LDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 509 (513)
Q Consensus 475 -~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~ 509 (513)
.+..+...+|-++|++++|||+|+..++|++++.+
T Consensus 276 ~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~V 311 (327)
T KOG0643|consen 276 FEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYV 311 (327)
T ss_pred HHHHhccccccccCcceeEECCCCcccccCCCCceE
Confidence 12234455789999999999999999999977654
No 74
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=7.6e-28 Score=227.21 Aligned_cols=302 Identities=15% Similarity=0.183 Sum_probs=205.8
Q ss_pred cccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEecccc
Q 010287 18 KFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ 97 (513)
Q Consensus 18 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (513)
++..+||+... ...|-..|+....++++..+++++.+.....|+..++..+ ..+...+. .+. ....+.
T Consensus 5 k~rh~~g~~~k--~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v----~~~~~~G~----~~~--~~~~l~ 72 (493)
T PTZ00421 5 RFRHTQGVPAR--PDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV----LKHTDYGK----LAS--NPPILL 72 (493)
T ss_pred cccccccccCC--cccceeccccccccCCCCCcEeECCceEEEEEecCCceEE----eecccccc----CCC--CCceEe
Confidence 34556665544 2235677888888888777788888888888886544321 00000000 000 012356
Q ss_pred CCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCc
Q 010287 98 SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (513)
Q Consensus 98 ~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (513)
+|. +.|++++|+|. ++.+|++++.|++|++||+.++......
T Consensus 73 GH~------------~~V~~v~fsP~-d~~~LaSgS~DgtIkIWdi~~~~~~~~~------------------------- 114 (493)
T PTZ00421 73 GQE------------GPIIDVAFNPF-DPQKLFTASEDGTIMGWGIPEEGLTQNI------------------------- 114 (493)
T ss_pred CCC------------CCEEEEEEcCC-CCCEEEEEeCCCEEEEEecCCCcccccc-------------------------
Confidence 787 89999999763 4568999999999999999765321100
Q ss_pred eeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC-CEEEEE-cCCeE
Q 010287 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRI 255 (513)
Q Consensus 178 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i 255 (513)
..+. ..+.+|...|.+++|+|++ ++|+++ .|++|
T Consensus 115 -------------------------------------------~~~l-~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 115 -------------------------------------------SDPI-VHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred -------------------------------------------Ccce-EEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 0000 1146899999999999975 688887 79999
Q ss_pred EEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccc
Q 010287 256 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF 335 (513)
Q Consensus 256 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (513)
++||++++.... .+..|...|.+++|+|++ .+|++++.|+.|++||++++.. +..+..+..
T Consensus 151 rIWDl~tg~~~~--------~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~----v~tl~~H~~------ 211 (493)
T PTZ00421 151 NVWDVERGKAVE--------VIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTI----VSSVEAHAS------ 211 (493)
T ss_pred EEEECCCCeEEE--------EEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcE----EEEEecCCC------
Confidence 999999765432 456789999999999998 8999999999999999998765 333333321
Q ss_pred cccccccEEEEEEeecCCEEEEEe-----CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC
Q 010287 336 FTEIIASISDIKFARNGRHILSRD-----YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 410 (513)
Q Consensus 336 ~~~~~~~v~~i~~sp~~~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 410 (513)
.....+.|.+++..+++++ ++.|++||++....++.....+... .+....|+++++
T Consensus 212 -----~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~--------------~~~~~~~d~d~~ 272 (493)
T PTZ00421 212 -----AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSS--------------ALFIPFFDEDTN 272 (493)
T ss_pred -----CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCC--------------ceEEEEEcCCCC
Confidence 1245677888877777632 4899999998644455444333211 123567899999
Q ss_pred EEEEEe-CCCcEEEEecCCCCccceeecCCCCceeEEEEcCC
Q 010287 411 RVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 451 (513)
Q Consensus 411 ~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 451 (513)
+|++++ .|+.|++||+.++......-..+..+...+++.|.
T Consensus 273 ~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 273 LLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 999887 59999999999874332222234566777888775
No 75
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.8e-28 Score=195.08 Aligned_cols=239 Identities=18% Similarity=0.239 Sum_probs=189.7
Q ss_pred cCCeEEEEeccCC-CEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 010287 232 DYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 309 (513)
Q Consensus 232 ~~~v~~~~~~~~~-~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vw 309 (513)
.+.+..++|+++. ..++++ +||++++||+......+ ..++.|...|.++.|++.....+++++.|++|++|
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi-------~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW 132 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPI-------HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLW 132 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcch-------hHHHhhhhheEEeccccccceeEEeeccCCceEee
Confidence 3558899999963 445555 89999999976444433 26788999999999999877888999999999999
Q ss_pred EcCCcccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccc
Q 010287 310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPK 387 (513)
Q Consensus 310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~ 387 (513)
+...+.. +.++ .+|..-|....|+| ...++++++ |+.+++||++..++.+. +..|...
T Consensus 133 ~~~r~~S----v~Tf------------~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~E--- 192 (311)
T KOG0277|consen 133 DPNRPNS----VQTF------------NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSE--- 192 (311)
T ss_pred cCCCCcc----eEee------------cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccce---
Confidence 9876554 4444 45558899999999 566777765 59999999998777666 7777743
Q ss_pred cccccccCCccceeeEEEeC-CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCC-ceeeecCCCeEE
Q 010287 388 LCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVR 465 (513)
Q Consensus 388 ~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~ 465 (513)
++++.|+. +.++|+||+.|+.|+.||+++-...+.++.+|...|+++.+||... .||+++.|-+++
T Consensus 193 ------------il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~r 260 (311)
T KOG0277|consen 193 ------------ILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVR 260 (311)
T ss_pred ------------eEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEE
Confidence 55899987 5567889999999999999988777788999999999999999765 689999999999
Q ss_pred EecCCCCCccc-cCCccccccCCeeEEEEeCC-CCEEEEEc-CCcEEEEe
Q 010287 466 RVKGADNSALD-ANGNAFDFSMKLLHLAWHPS-ENSIACAA-SNSLYMYY 512 (513)
Q Consensus 466 ~~~~~~~~~~~-~~~~~~~~~~~i~~~~~sp~-~~~la~~~-~~~~~i~~ 512 (513)
| |++...+ .....-.|+.-+..+.||+- ..++|+.+ |..++||+
T Consensus 261 i---w~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 261 I---WDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred e---cccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 9 5544212 22233357888999999987 56788666 99999997
No 76
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=3.6e-28 Score=232.38 Aligned_cols=313 Identities=15% Similarity=0.208 Sum_probs=226.8
Q ss_pred cccEEEEEEcCCCCEEEeec--CCCcEEEEEeeCCCCCC-CccCccccccccccCCCcceEeccccCCCCcccccccccc
Q 010287 35 VDIISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNG-GQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (513)
Q Consensus 35 ~~~V~~v~~sp~g~~latg~--~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (513)
...|.+++.+|+|..+|||+ .||.++||+...--... .....+ .........|.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l------------~k~l~~m~~h~----------- 69 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENL------------PKHLCTMDDHD----------- 69 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhccc------------chhheeecccc-----------
Confidence 56799999999999999999 89999999964321100 000000 11122345566
Q ss_pred cccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccC
Q 010287 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (513)
Q Consensus 112 ~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 191 (513)
+.|+|+.| ++||.+||+|+.|+.|.+|.......... |
T Consensus 70 -~sv~CVR~--S~dG~~lAsGSDD~~v~iW~~~~~~~~~~---------------------------f------------ 107 (942)
T KOG0973|consen 70 -GSVNCVRF--SPDGSYLASGSDDRLVMIWERAEIGSGTV---------------------------F------------ 107 (942)
T ss_pred -CceeEEEE--CCCCCeEeeccCcceEEEeeecccCCccc---------------------------c------------
Confidence 89999999 55999999999999999999875100000 0
Q ss_pred CCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeec
Q 010287 192 CASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 270 (513)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~ 270 (513)
-+.++...+.-|. +. ..+.+|...|..++|+|++.+|+++ -|++|.+|+..+.+ ..+
T Consensus 108 -------gs~g~~~~vE~wk-----------~~-~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~-~~~-- 165 (942)
T KOG0973|consen 108 -------GSTGGAKNVESWK-----------VV-SILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE-LLK-- 165 (942)
T ss_pred -------cccccccccceee-----------EE-EEEecCCCccceeccCCCccEEEEecccceEEEEccccce-eee--
Confidence 0111111222221 12 2257899999999999999999998 59999999999873 433
Q ss_pred ccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee
Q 010287 271 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 350 (513)
Q Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp 350 (513)
.+.+|.+.|..+.|.|-| ++|++-+.|++|++|++.+-.. .+.+..+... ......+..+.|||
T Consensus 166 -----vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i----~k~It~pf~~------~~~~T~f~RlSWSP 229 (942)
T KOG0973|consen 166 -----VLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGI----EKSITKPFEE------SPLTTFFLRLSWSP 229 (942)
T ss_pred -----eeecccccccceEECCcc-CeeeeecCCceEEEEEccccee----eEeeccchhh------CCCcceeeecccCC
Confidence 568999999999999999 9999999999999999665333 2222222111 11124678899999
Q ss_pred cCCEEEEEe-----CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC-------------CC--
Q 010287 351 NGRHILSRD-----YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-------------GG-- 410 (513)
Q Consensus 351 ~~~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-------------~~-- 410 (513)
||++|++.. ..++.|.+-.+ -+.-..+-+|..+ +..+.|+|. ++
T Consensus 230 DG~~las~nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p---------------~evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 230 DGHHLASPNAVNGGKSTIAIIERGT-WKVDKDLVGHSAP---------------VEVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred CcCeecchhhccCCcceeEEEecCC-ceeeeeeecCCCc---------------eEEEEeChHHhccccccCCccCCCcc
Confidence 999999842 26788888764 5556777888876 347777762 11
Q ss_pred --EEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 411 --RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 411 --~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.+|+|+.|++|.||.......+....+....+|..+.|+|||..|..+|.||.|.+
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~ 351 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVAL 351 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEE
Confidence 57899999999999987665555555566789999999999999999999999998
No 77
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=4.4e-27 Score=205.98 Aligned_cols=388 Identities=12% Similarity=0.139 Sum_probs=262.4
Q ss_pred cccccccccccccEEEEEEcCCCCEEEeecCCC--------cEEEEEeeCCCCCCCccCccccccccccCCCcceEeccc
Q 010287 25 ERTAGEEVQEVDIISAIEFDKSGDHLATGDRGG--------RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF 96 (513)
Q Consensus 25 ~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg--------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (513)
++.+..+.+|.+.|.|++.+||...+|+|-..| .++|||..+-.. ...+
T Consensus 94 e~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T-----------------------L~V~ 150 (626)
T KOG2106|consen 94 ERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST-----------------------LHVI 150 (626)
T ss_pred hhhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee-----------------------eeee
Confidence 344556889999999999999999999876544 399999543321 1122
Q ss_pred cCCCCcccccccccccccceeEEEeecCCCceEEEe--ecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccc
Q 010287 97 QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLS--TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (513)
Q Consensus 97 ~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~--s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (513)
...+ ..|.+++|++...|.+++.- +.+..+.+||.+.+.......... ...
T Consensus 151 g~f~------------~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sn---------------e~v 203 (626)
T KOG2106|consen 151 GFFD------------RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSN---------------EVV 203 (626)
T ss_pred cccc------------ccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceecc---------------ceE
Confidence 2233 77999999987777777664 677889999998764322111000 001
Q ss_pred cCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCC
Q 010287 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 253 (513)
Q Consensus 175 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~ 253 (513)
....|.|.+..+ +...+.+.+.+|+.......... ..+-......|.|++|.++|.. ++| ++|
T Consensus 204 ~~a~FHPtd~nl------------iit~Gk~H~~Fw~~~~~~l~k~~---~~fek~ekk~Vl~v~F~engdv-iTgDS~G 267 (626)
T KOG2106|consen 204 FLATFHPTDPNL------------IITCGKGHLYFWTLRGGSLVKRQ---GIFEKREKKFVLCVTFLENGDV-ITGDSGG 267 (626)
T ss_pred EEEEeccCCCcE------------EEEeCCceEEEEEccCCceEEEe---eccccccceEEEEEEEcCCCCE-EeecCCc
Confidence 133566666655 66678899999987665442211 1122222356999999999875 466 799
Q ss_pred eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccc-------ccee---
Q 010287 254 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT-------HSKL--- 323 (513)
Q Consensus 254 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-------~~~~--- 323 (513)
.|.||+..+.+... ....|.+.|.+++...+| .|++|+.|+.|..||-.-.+.... .+++
T Consensus 268 ~i~Iw~~~~~~~~k--------~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e 337 (626)
T KOG2106|consen 268 NILIWSKGTNRISK--------QVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAE 337 (626)
T ss_pred eEEEEeCCCceEEe--------EeeecCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEec
Confidence 99999986544332 223799999999999998 456699999999999322111100 0111
Q ss_pred --------------eccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeeccccccccc
Q 010287 324 --------------FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKL 388 (513)
Q Consensus 324 --------------~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 388 (513)
+.+.-.........+|......++.+|+...+++++ |+.+++|+ . .+++-+......
T Consensus 338 ~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~--~k~~wt~~~~d~----- 409 (626)
T KOG2106|consen 338 GKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D--HKLEWTKIIEDP----- 409 (626)
T ss_pred CCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C--CceeEEEEecCc-----
Confidence 111111111122356888899999999888777755 69999999 3 444443332222
Q ss_pred ccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEec
Q 010287 389 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK 468 (513)
Q Consensus 389 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~ 468 (513)
+.++.|+|.| .++.|+..|...+.|.++. .. .++.....++..+.++|+|.+||.|+.|+.|.|+.
T Consensus 410 -----------~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~l-v~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~ 475 (626)
T KOG2106|consen 410 -----------AECADFHPSG-VVAVGTATGRWFVLDTETQ-DL-VTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYR 475 (626)
T ss_pred -----------eeEeeccCcc-eEEEeeccceEEEEecccc-ee-EEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 2389999999 9999999999999999974 33 34444488999999999999999999999999921
Q ss_pred CCC-CCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287 469 GAD-NSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 469 ~~~-~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 512 (513)
... -......+.+ +.++|+++.||+|+++|.+.+-|--++|+
T Consensus 476 Vs~~g~~y~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 476 VSANGRKYSRVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred ECCCCcEEEEeeee--cCceeEEeeecCCCceEEeccCceEEEEE
Confidence 111 1111122222 34899999999999999999877666665
No 78
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=8e-28 Score=206.72 Aligned_cols=281 Identities=18% Similarity=0.266 Sum_probs=226.8
Q ss_pred cccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccc
Q 010287 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (513)
Q Consensus 35 ~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (513)
...|+++...|....++||+.|..+.++|....+. ...|.||. ..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~-----------------------l~~~~Gh~------------kk 263 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQI-----------------------LATLKGHT------------KK 263 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhh-----------------------hhhccCcc------------eE
Confidence 45788888888878999999999999999766553 36789999 89
Q ss_pred ceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCC
Q 010287 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (513)
Q Consensus 115 i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (513)
|+.+.|+| +...+++++.|..|++|..........
T Consensus 264 i~~v~~~~--~~~~v~~aSad~~i~vws~~~~s~~~~------------------------------------------- 298 (506)
T KOG0289|consen 264 ITSVKFHK--DLDTVITASADEIIRVWSVPLSSEPTS------------------------------------------- 298 (506)
T ss_pred EEEEEecc--chhheeecCCcceEEeeccccccCccc-------------------------------------------
Confidence 99999977 445899999999999999866542211
Q ss_pred CCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccC
Q 010287 195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 273 (513)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~ 273 (513)
...|..+|+.+..+|.|.||+++ +|++..+.|++++.......
T Consensus 299 ---------------------------------~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs--- 342 (506)
T KOG0289|consen 299 ---------------------------------SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVS--- 342 (506)
T ss_pred ---------------------------------cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEe---
Confidence 35788899999999999999999 79999999999887664431
Q ss_pred ccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC
Q 010287 274 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 353 (513)
Q Consensus 274 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~ 353 (513)
-+...-.+++.+|+||| .+|.+|..||.+++||+.++.... . |.+|.++|..++|+.+|-
T Consensus 343 ---~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a----~------------Fpght~~vk~i~FsENGY 402 (506)
T KOG0289|consen 343 ---DETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVA----K------------FPGHTGPVKAISFSENGY 402 (506)
T ss_pred ---eccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccc----c------------CCCCCCceeEEEeccCce
Confidence 11233458999999999 999999999999999998866422 2 566779999999999999
Q ss_pred EEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC-c
Q 010287 354 HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS-A 431 (513)
Q Consensus 354 ~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~ 431 (513)
+|+++.+ +.|++||++. .+..+++...+.. ++.+++|.+.|.+|+.++.|=.|++++-.+.. .
T Consensus 403 ~Lat~add~~V~lwDLRK-l~n~kt~~l~~~~--------------~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~ 467 (506)
T KOG0289|consen 403 WLATAADDGSVKLWDLRK-LKNFKTIQLDEKK--------------EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWT 467 (506)
T ss_pred EEEEEecCCeEEEEEehh-hcccceeeccccc--------------cceeEEEcCCCCeEEeecceeEEEEEecccccce
Confidence 9999776 8899999996 6667777655432 14489999999999999887677766644332 2
Q ss_pred cceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 432 ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 432 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
....+..|.+....+.|....++++++++|..+++
T Consensus 468 ~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 468 EIKELADHSGLSTGVRFGEHAQYLASTSMDAILRL 502 (506)
T ss_pred eeehhhhcccccceeeecccceEEeeccchhheEE
Confidence 23566677888889999999999999999999887
No 79
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.7e-27 Score=217.00 Aligned_cols=406 Identities=12% Similarity=0.084 Sum_probs=262.6
Q ss_pred cccccEEEEEEcCCCCEEEeec--CCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 33 QEVDIISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 33 ~h~~~V~~v~~sp~g~~latg~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
.|..+++|++||++|+|+|+|- ....+++|++.... ...+|..|+
T Consensus 76 ssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~-----------------------vVAEfvdHK---------- 122 (1080)
T KOG1408|consen 76 SSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHG-----------------------VVAEFVDHK---------- 122 (1080)
T ss_pred ccCcceeEEEEcCCCcEEEecccCCCccceeeeecccc-----------------------chhhhhhcc----------
Confidence 4677999999999999999997 56679999987554 336788888
Q ss_pred ccccceeEEEeecCCCceEEEeec--CCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 188 (513)
-.|+|++|+| .++++++.+. |-.|.+||++.+......++. ...+.++|+.||.+...
T Consensus 123 --Y~vtcvaFsp--~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkis----------------s~Vsav~fsEdgSYfvT 182 (1080)
T KOG1408|consen 123 --YNVTCVAFSP--GNKYVVSVGSQHDMIVNVNDWRVNSSGASNKIS----------------SVVSAVAFSEDGSYFVT 182 (1080)
T ss_pred --ccceeeeecC--CCcEEEeeccccceEEEhhhhhhcccccccccc----------------eeEEEEEEccCCceeee
Confidence 8899999966 5668887544 667888987653211110000 01112222222211110
Q ss_pred c--------------------------------------------c----------------------------------
Q 010287 189 N--------------------------------------------F---------------------------------- 190 (513)
Q Consensus 189 ~--------------------------------------------~---------------------------------- 190 (513)
. .
T Consensus 183 ~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTn 262 (1080)
T KOG1408|consen 183 SGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTN 262 (1080)
T ss_pred eeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccc
Confidence 0 0
Q ss_pred ---CCCCCCCCcCCCCCCceeceeeccCCcccccc--------------eeeEee---ccccCCeEEEEeccCCCEEEEE
Q 010287 191 ---GCASNDSSFPPGGVSSLRLPVVTSQETNLVAG--------------CRRIYA---HAHDYHINSISNNSDGETFISA 250 (513)
Q Consensus 191 ---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------------~~~~~~---~~h~~~v~~~~~~~~~~~l~s~ 250 (513)
.+-...+++.++.++.+++++-.+.+...+.. +.+.+. .+.-....++.|++....+..-
T Consensus 263 AnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscV 342 (1080)
T KOG1408|consen 263 ANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCV 342 (1080)
T ss_pred cceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEE
Confidence 00123455556677777777665543211100 000000 0001123467788888888877
Q ss_pred -cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCC----------CeEEEEEeCCCcEEEEEcCCcc---c
Q 010287 251 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH----------CNMLAYSSSKGSIRLIDMRQSA---L 316 (513)
Q Consensus 251 -~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~~l~~~~~dg~i~vwd~~~~~---~ 316 (513)
.|..|++||++..++..+. ..+.-|...|.++.--|-. +..|++|+.|++|++||+..+. .
T Consensus 343 YndhSlYvWDvrD~~kvgk~-----~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~v 417 (1080)
T KOG1408|consen 343 YNDHSLYVWDVRDVNKVGKC-----SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQV 417 (1080)
T ss_pred EcCceEEEEeccccccccce-----eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccce
Confidence 7999999999876654332 2445577777766654410 1369999999999999997632 1
Q ss_pred ccccceeecc---------------ccCC---CCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeee
Q 010287 317 CDTHSKLFEE---------------QEAP---GTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVAT 377 (513)
Q Consensus 317 ~~~~~~~~~~---------------~~~~---~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~ 377 (513)
..+.+..-+. ...+ .......+....+++++.||+|++|++|+. |+++||++.. -+....
T Consensus 418 yrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~ 496 (1080)
T KOG1408|consen 418 YRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE-LEYTCF 496 (1080)
T ss_pred eecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh-hhhhhh
Confidence 1111100000 0000 000011223457999999999999999997 9999999996 777778
Q ss_pred eecccccccccccccccCCccceeeEEEeC---CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCC--
Q 010287 378 FQVHEHLRPKLCDLYENDSIFDKFECCLSG---DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-- 452 (513)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-- 452 (513)
+..|+.. |.++.|+. ..++|++++.|..|+|||......+.+++.+|...|+++.|.-.|
T Consensus 497 ~eAHesE---------------ilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln 561 (1080)
T KOG1408|consen 497 MEAHESE---------------ILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLN 561 (1080)
T ss_pred eecccce---------------eEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCc
Confidence 8888876 45777774 347899999999999999988777779999999999999998777
Q ss_pred CceeeecCCCeEEEecCCCCC-ccc-cCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 453 PSRPLGSLSGVVRRVKGADNS-ALD-ANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 453 ~~l~~~~~d~~i~~~~~~~~~-~~~-~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
..+++++.|..|.+....+.. +.. ......--...+++|+..|..++++++. |.+|.||.
T Consensus 562 ~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~ 624 (1080)
T KOG1408|consen 562 RKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFD 624 (1080)
T ss_pred eEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEe
Confidence 678999999988871111110 000 1111111245789999999999999777 88899985
No 80
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=3.5e-28 Score=213.37 Aligned_cols=300 Identities=15% Similarity=0.210 Sum_probs=208.3
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
..|.++++ .+.|..|++|+.|.+|++||+..-......
T Consensus 168 k~Vsal~~--Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~---------------------------------------- 205 (641)
T KOG0772|consen 168 KIVSALAV--DPSGARFVSGSLDYTVKFWDFQGMDASMRS---------------------------------------- 205 (641)
T ss_pred eEEEEeee--cCCCceeeeccccceEEEEecccccccchh----------------------------------------
Confidence 88999999 558889999999999999999764311100
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
++ .........|+++.|++.+..|++. .....+|+|.. +....+...
T Consensus 206 --------------fr-----------------~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd-G~~~~e~~K 253 (641)
T KOG0772|consen 206 --------------FR-----------------QLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD-GFEIVEFSK 253 (641)
T ss_pred --------------hh-----------------ccCcccccccceeeecCCCCeEEEEecCcceeEEccC-Cceeeeeec
Confidence 00 0011223458899999998888876 68889999976 333332211
Q ss_pred c-----CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEE
Q 010287 272 V-----KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 346 (513)
Q Consensus 272 ~-----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 346 (513)
- ....-++|...++|.+|+|+....|++++.||++++||+.+.+.. ..++..... .+..-+++.+
T Consensus 254 GDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q---~qVik~k~~-------~g~Rv~~tsC 323 (641)
T KOG0772|consen 254 GDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ---LQVIKTKPA-------GGKRVPVTSC 323 (641)
T ss_pred cchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh---eeEEeeccC-------CCcccCceee
Confidence 1 112347899999999999998889999999999999999875532 233332211 2233578999
Q ss_pred EEeecCCEEEEEe-CCeEEEEEccCCC-CC-eeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEE
Q 010287 347 KFARNGRHILSRD-YMTLKLWDINMDS-GP-VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 423 (513)
Q Consensus 347 ~~sp~~~~l~~~~-~~~v~iwd~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 423 (513)
+|+|||.+||+|. ||.|.+|+..... .+ ...-..|... .+|+++.||+||++|++-+.|+++++
T Consensus 324 ~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g-------------~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 324 AWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPG-------------QDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred ecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCC-------------CceeEEEeccccchhhhccCCCceee
Confidence 9999999999976 4999999976411 11 2222344432 23679999999999999999999999
Q ss_pred EecCCCCccceeecCC--CCceeEEEEcCCCCceeeecCC------CeEEEecCCCCCccccCCccccccCCeeEEEEeC
Q 010287 424 FGCSEGSAESTTLEAS--KNPMRRQVQTPSRPSRPLGSLS------GVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP 495 (513)
Q Consensus 424 wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d------~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 495 (513)
||++..++.+.+..+- ..+-+.++|+|+.++|++|..- |.+.++....+. ......-....|..+.|||
T Consensus 391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d---~v~ki~i~~aSvv~~~Whp 467 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD---TVYKIDISTASVVRCLWHP 467 (641)
T ss_pred eeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee---eEEEecCCCceEEEEeecc
Confidence 9999876666555443 3456789999999999998642 334442222111 1111111257899999999
Q ss_pred CCCEEE-EEcCCcEEEEe
Q 010287 496 SENSIA-CAASNSLYMYY 512 (513)
Q Consensus 496 ~~~~la-~~~~~~~~i~~ 512 (513)
.-+.|. ..+++++.+|+
T Consensus 468 kLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 468 KLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred hhhheeeecCCCceEEEE
Confidence 966555 55588888886
No 81
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.6e-28 Score=219.87 Aligned_cols=240 Identities=17% Similarity=0.344 Sum_probs=200.7
Q ss_pred cccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccC-CCCcccccccccccc
Q 010287 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEPEFDYLKSLEIEE 113 (513)
Q Consensus 35 ~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~ 113 (513)
.+.|+++.|+++|.+||+|..+|.|.|||....+.+ ..+.+ |. .
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~-----------------------~~~~~~h~------------~ 261 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT-----------------------RTLRGSHA------------S 261 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc-----------------------ccccCCcC------------c
Confidence 799999999999999999999999999998766643 34455 66 8
Q ss_pred cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (513)
Q Consensus 114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (513)
.|.+++|. +..+.+|+.|+.|..+|++..+....
T Consensus 262 rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~------------------------------------------ 295 (484)
T KOG0305|consen 262 RVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVS------------------------------------------ 295 (484)
T ss_pred eeEEEecc----CceEEEecCCCcEEEEEEecchhhhh------------------------------------------
Confidence 89999993 45788999999999999987642110
Q ss_pred CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc
Q 010287 194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 272 (513)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~ 272 (513)
.+.+|...|..++|++|++++++| .|+.+.|||.......+
T Consensus 296 ---------------------------------~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~----- 337 (484)
T KOG0305|consen 296 ---------------------------------TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF----- 337 (484)
T ss_pred ---------------------------------hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE-----
Confidence 036888999999999999999999 79999999996544443
Q ss_pred CccccccccCCeEEEEEeCCCCeEEEEEeC--CCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee
Q 010287 273 KPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 350 (513)
Q Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp 350 (513)
.+..|...|..++|+|-...+||+|+. |+.|++||..++.... ..+.. +.|.++.|++
T Consensus 338 ---~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~----~vdtg-------------sQVcsL~Wsk 397 (484)
T KOG0305|consen 338 ---TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID----SVDTG-------------SQVCSLIWSK 397 (484)
T ss_pred ---EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec----ccccC-------------CceeeEEEcC
Confidence 567899999999999988789998765 9999999999887632 22221 5799999999
Q ss_pred cCCEEEEEe---CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287 351 NGRHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 427 (513)
Q Consensus 351 ~~~~l~~~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 427 (513)
..+.|+++. +..|.||+..+ .+.+..+.+|... |..++++|||..+++|+.|.++++|++-
T Consensus 398 ~~kEi~sthG~s~n~i~lw~~ps-~~~~~~l~gH~~R---------------Vl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 398 KYKELLSTHGYSENQITLWKYPS-MKLVAELLGHTSR---------------VLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred CCCEEEEecCCCCCcEEEEeccc-cceeeeecCCcce---------------eEEEEECCCCCEEEEecccCcEEecccc
Confidence 887777642 28999999997 8889999999876 5689999999999999999999999987
Q ss_pred CC
Q 010287 428 EG 429 (513)
Q Consensus 428 ~~ 429 (513)
..
T Consensus 462 ~~ 463 (484)
T KOG0305|consen 462 DE 463 (484)
T ss_pred CC
Confidence 64
No 82
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-26 Score=192.33 Aligned_cols=277 Identities=18% Similarity=0.236 Sum_probs=207.2
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
..|+++.| +.+|..+++++.|.+++|||..+++......
T Consensus 15 ~~i~sl~f--s~~G~~litss~dDsl~LYd~~~g~~~~ti~--------------------------------------- 53 (311)
T KOG1446|consen 15 GKINSLDF--SDDGLLLITSSEDDSLRLYDSLSGKQVKTIN--------------------------------------- 53 (311)
T ss_pred CceeEEEe--cCCCCEEEEecCCCeEEEEEcCCCceeeEee---------------------------------------
Confidence 77999999 5588899999999999999999987655422
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE---cCCeEEEEEcCCCcceeee
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNI 269 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---~d~~i~vwd~~~~~~~~~~ 269 (513)
.+...+..++|......++.+ .|.+|+..++.+.+- ++
T Consensus 54 -------------------------------------skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky-lR- 94 (311)
T KOG1446|consen 54 -------------------------------------SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY-LR- 94 (311)
T ss_pred -------------------------------------cccccccEEEEecCCceEEEccCCCCCceEEEEeecCce-EE-
Confidence 223346677776655555544 399999999986553 33
Q ss_pred cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287 270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 349 (513)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 349 (513)
.+.+|...|.+++.+|-+ ..|++++.|++|++||+|..+.. ..+.. ..-..++|+
T Consensus 95 ------YF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cq----g~l~~--------------~~~pi~AfD 149 (311)
T KOG1446|consen 95 ------YFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQ----GLLNL--------------SGRPIAAFD 149 (311)
T ss_pred ------EcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCc----eEEec--------------CCCcceeEC
Confidence 679999999999999998 89999999999999999965541 11111 123447899
Q ss_pred ecCCEEEEEeC-CeEEEEEccCC-CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287 350 RNGRHILSRDY-MTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 427 (513)
Q Consensus 350 p~~~~l~~~~~-~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 427 (513)
|.|-++|++.. ..|++||+++- ..|..++........ ..+.+.|||||++|+.++..+.+++.|.-
T Consensus 150 p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~------------ew~~l~FS~dGK~iLlsT~~s~~~~lDAf 217 (311)
T KOG1446|consen 150 PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEA------------EWTDLEFSPDGKSILLSTNASFIYLLDAF 217 (311)
T ss_pred CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCcc------------ceeeeEEcCCCCEEEEEeCCCcEEEEEcc
Confidence 99999999887 69999999974 456666654432211 13489999999999999999999999999
Q ss_pred CCCccceeecCCCCce---eEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCcccc-ccCCeeEEEEeCCCCEEEEE
Q 010287 428 EGSAESTTLEASKNPM---RRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD-FSMKLLHLAWHPSENSIACA 503 (513)
Q Consensus 428 ~~~~~~~~~~~~~~~v---~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~ 503 (513)
.|. ...++..+...- ...+|+|+++++++|+.||.|.+ |............+ +..++.++.|+|...++|++
T Consensus 218 ~G~-~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~v---w~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa 293 (311)
T KOG1446|consen 218 DGT-VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHV---WNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA 293 (311)
T ss_pred CCc-EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEE---EEcCCCcEeeEecCCCCCCccccccCCceeeeeec
Confidence 884 556666554433 57889999999999999999999 33322122222222 57889999999998888877
Q ss_pred cCCcEEEE
Q 010287 504 ASNSLYMY 511 (513)
Q Consensus 504 ~~~~~~i~ 511 (513)
+.. +.+|
T Consensus 294 ~s~-l~fw 300 (311)
T KOG1446|consen 294 SSN-LVFW 300 (311)
T ss_pred Cce-EEEE
Confidence 654 4444
No 83
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.2e-27 Score=216.26 Aligned_cols=364 Identities=15% Similarity=0.195 Sum_probs=238.1
Q ss_pred EEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeE
Q 010287 39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (513)
Q Consensus 39 ~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i 118 (513)
-++.|+|....|.+-..|..++|||+.+....++. ..+-.|. ..|+.+
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~--------------------~s~lyHS------------~ciW~V 375 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKC--------------------SSMLYHS------------ACIWDV 375 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccce--------------------eeeeecc------------ceeeee
Confidence 46779999999999999999999999876654332 1222343 555555
Q ss_pred EEeec---------CCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 119 RWCQS---------ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 119 ~~~~~---------~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
.-.|. -....|.+++.|++||+|++..+....+..-+.-..
T Consensus 376 e~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~------------------------------ 425 (1080)
T KOG1408|consen 376 ENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSA------------------------------ 425 (1080)
T ss_pred ccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchh------------------------------
Confidence 54441 012368999999999999998743222211111000
Q ss_pred cCCCCCCCCcCCCCCCceece-eeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287 190 FGCASNDSSFPPGGVSSLRLP-VVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 267 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~ 267 (513)
++.-.+..++...+. |....-. .............+++++++|++++|++| .-|.|++|++.......
T Consensus 426 ------~l~ki~y~d~~~q~~~d~~~~~f----dka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~ 495 (1080)
T KOG1408|consen 426 ------NLSKIPYEDSTQQIMHDASAGIF----DKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTC 495 (1080)
T ss_pred ------hhhcCccccCchhhhhhccCCcc----cccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhh
Confidence 000000011111100 0000000 00000012344569999999999999999 59999999998544332
Q ss_pred eecccCccccccccCCeEEEEEeCC--CCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287 268 NIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 345 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 345 (513)
.++.|...|.|+.|+.- +.++|++++.|+.|++||+...... +. .+.+|...|++
T Consensus 496 --------~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l---~q------------tld~HSssITs 552 (1080)
T KOG1408|consen 496 --------FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL---VQ------------TLDGHSSSITS 552 (1080)
T ss_pred --------heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch---hh------------hhcccccceeE
Confidence 56889999999999842 2368999999999999998654321 11 25678899999
Q ss_pred EEEeecC--CEEEEE-eCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEE
Q 010287 346 IKFARNG--RHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 422 (513)
Q Consensus 346 i~~sp~~--~~l~~~-~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 422 (513)
+.|.-+| ..++++ .|.. .+|+..........+..|.....+ . .++.++..|..+++++++.|..|+
T Consensus 553 vKFa~~gln~~MiscGADks-imFr~~qk~~~g~~f~r~t~t~~k-t---------TlYDm~Vdp~~k~v~t~cQDrnir 621 (1080)
T KOG1408|consen 553 VKFACNGLNRKMISCGADKS-IMFRVNQKASSGRLFPRHTQTLSK-T---------TLYDMAVDPTSKLVVTVCQDRNIR 621 (1080)
T ss_pred EEEeecCCceEEEeccCchh-hheehhccccCceecccccccccc-c---------eEEEeeeCCCcceEEEEecccceE
Confidence 9999866 556654 4543 344443212222223323222111 1 134899999999999999999999
Q ss_pred EEecCCCCccceeecC---CCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCE
Q 010287 423 VFGCSEGSAESTTLEA---SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENS 499 (513)
Q Consensus 423 vwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~ 499 (513)
||+++++++ ...+++ |.+..-.+...|.|.|+|+...|.++.+ -+....+.....++|+..|+.+.|.+|-+.
T Consensus 622 if~i~sgKq-~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~---~Df~sgEcvA~m~GHsE~VTG~kF~nDCkH 697 (1080)
T KOG1408|consen 622 IFDIESGKQ-VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCF---VDFVSGECVAQMTGHSEAVTGVKFLNDCKH 697 (1080)
T ss_pred EEeccccce-eeeecccccCCCceEEEEECCCccEEEEeecCCceEE---EEeccchhhhhhcCcchheeeeeecccchh
Confidence 999999844 466665 4455668899999999999999999998 111112233466679999999999999998
Q ss_pred EEEE-cCCcEEEEe
Q 010287 500 IACA-ASNSLYMYY 512 (513)
Q Consensus 500 la~~-~~~~~~i~~ 512 (513)
|++. +|+.|+||.
T Consensus 698 lISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 698 LISVSGDGCIFVWK 711 (1080)
T ss_pred heeecCCceEEEEE
Confidence 8855 488899996
No 84
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.2e-26 Score=179.08 Aligned_cols=308 Identities=18% Similarity=0.173 Sum_probs=224.5
Q ss_pred cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
.+..++.|.+++|+|.|.+.|+|+...+.+|.....-... +...+ -+..|.....+.-.-|.
T Consensus 28 ~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~---r~~he-----a~~~pp~v~~kr~khhk---------- 89 (350)
T KOG0641|consen 28 ILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDL---RHAHE-----AAKQPPSVLCKRNKHHK---------- 89 (350)
T ss_pred EecchhheeeEEecCCCceEEeccCCceEEEEccccccCc---ccccc-----cccCCCeEEeeeccccC----------
Confidence 4456889999999999999999999999998874322110 11100 01112222223233344
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
+.|+|.+|+| +|.+++++++|++|++-..+...+... |..
T Consensus 90 --gsiyc~~ws~--~geliatgsndk~ik~l~fn~dt~~~~-------------------------------g~d----- 129 (350)
T KOG0641|consen 90 --GSIYCTAWSP--CGELIATGSNDKTIKVLPFNADTCNAT-------------------------------GHD----- 129 (350)
T ss_pred --ccEEEEEecC--ccCeEEecCCCceEEEEeccccccccc-------------------------------Ccc-----
Confidence 8999999955 888999999999999987765443211 000
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC----CCEEEEE--cCCeEEEEEcCCCc
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD----GETFISA--DDLRINLWNLEISN 264 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s~--~d~~i~vwd~~~~~ 264 (513)
..+.-|.+.|..++|-.+ +.+|+++ .|..|++-|..+++
T Consensus 130 -----------------------------------le~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 130 -----------------------------------LEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred -----------------------------------eeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 013567888999999543 5677776 47778888887766
Q ss_pred ceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEE
Q 010287 265 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 344 (513)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 344 (513)
... .+.+|.+.|.++- +-++ -+|++|+.|.+|++||++-... +.++....... .-.++.|.
T Consensus 175 ~~~--------a~sghtghilaly-swn~-~m~~sgsqdktirfwdlrv~~~----v~~l~~~~~~~-----glessava 235 (350)
T KOG0641|consen 175 GFH--------ALSGHTGHILALY-SWNG-AMFASGSQDKTIRFWDLRVNSC----VNTLDNDFHDG-----GLESSAVA 235 (350)
T ss_pred cce--------eecCCcccEEEEE-EecC-cEEEccCCCceEEEEeeeccce----eeeccCcccCC-----CcccceeE
Confidence 443 5688999998874 2234 7899999999999999987655 33332211000 00125799
Q ss_pred EEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEE
Q 010287 345 DIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 423 (513)
Q Consensus 345 ~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 423 (513)
+++..|.|++|++|.. ....+||++- +++++.+..|... |.++.|+|...||++++.|..|++
T Consensus 236 av~vdpsgrll~sg~~dssc~lydirg-~r~iq~f~phsad---------------ir~vrfsp~a~yllt~syd~~ikl 299 (350)
T KOG0641|consen 236 AVAVDPSGRLLASGHADSSCMLYDIRG-GRMIQRFHPHSAD---------------IRCVRFSPGAHYLLTCSYDMKIKL 299 (350)
T ss_pred EEEECCCcceeeeccCCCceEEEEeeC-CceeeeeCCCccc---------------eeEEEeCCCceEEEEecccceEEE
Confidence 9999999999999975 8899999995 8999999888765 449999999999999999999999
Q ss_pred EecCCCC---ccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 424 FGCSEGS---AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 424 wd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
-|+...- ....+...|...+-.+.|.|..-.+++.+.|.++.+
T Consensus 300 tdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tl 345 (350)
T KOG0641|consen 300 TDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATL 345 (350)
T ss_pred eecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEE
Confidence 9987431 122455678888889999999999999999999887
No 85
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.7e-27 Score=206.69 Aligned_cols=234 Identities=15% Similarity=0.217 Sum_probs=188.5
Q ss_pred CCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287 233 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 311 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~ 311 (513)
..+.+++|-.||++|++| ..|.|+++|.. .+..+. .+..|+.++..+.|+|++...+++|+.|+.+++||+
T Consensus 69 ~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k-~r~iLR-------~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~ 140 (487)
T KOG0310|consen 69 DVVYSVDFRSDGRLLAAGDESGHVKVFDMK-SRVILR-------QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL 140 (487)
T ss_pred cceeEEEeecCCeEEEccCCcCcEEEeccc-cHHHHH-------HHhhccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence 458899999999999999 69999999955 333332 578999999999999998889999999999999999
Q ss_pred CCcccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccc
Q 010287 312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLC 389 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
.+... ... +.+|...|.|.+|+| ++.++++|+. |.|++||++.....+.++. |..+
T Consensus 141 s~a~v----~~~------------l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~p----- 198 (487)
T KOG0310|consen 141 STAYV----QAE------------LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCP----- 198 (487)
T ss_pred CCcEE----EEE------------ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCc-----
Confidence 87653 112 466778999999999 4567778885 9999999997444454543 3333
Q ss_pred cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecC
Q 010287 390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG 469 (513)
Q Consensus 390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~ 469 (513)
|-.+.+-|.|..+++++. ..|++||+.+|.+++.....|...|+++.+..++..|++|+-|+.++++..
T Consensus 199 ----------Ve~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 199 ----------VESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDT 267 (487)
T ss_pred ----------eeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEc
Confidence 348899999999998885 579999999887777777779999999999999999999999999999331
Q ss_pred CCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEE
Q 010287 470 ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 511 (513)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~ 511 (513)
... .....+.+.++|.+++.+|++..++.|-.|++..+
T Consensus 268 t~~----Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 268 TNY----KVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred cce----EEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 111 11233456899999999999999999988887654
No 86
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.1e-26 Score=201.45 Aligned_cols=300 Identities=13% Similarity=0.190 Sum_probs=220.3
Q ss_pred cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccc-cCCCCcccccccc
Q 010287 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKSL 109 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~ 109 (513)
...|.-+|+|++++|+++++.+++.+|+|.=|++.+++...-.. +....-. ..+.....- .+|.
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~---~~~ev~k---~~~~~~k~~r~~h~--------- 202 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYII---ERDEVLK---SHGNPLKESRKGHV--------- 202 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCccccccc---ccchhhh---hccCCCCccccccc---------
Confidence 44689999999999999999999999999999998877531110 0000000 000000000 2454
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
..|.+++. ++|+.+|++|+.|..|.||+.++.+....
T Consensus 203 ---keil~~av--S~Dgkylatgg~d~~v~Iw~~~t~ehv~~-------------------------------------- 239 (479)
T KOG0299|consen 203 ---KEILTLAV--SSDGKYLATGGRDRHVQIWDCDTLEHVKV-------------------------------------- 239 (479)
T ss_pred ---ceeEEEEE--cCCCcEEEecCCCceEEEecCcccchhhc--------------------------------------
Confidence 77999999 55999999999999999999998763322
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~ 268 (513)
+.+|.+.|.+++|-.....++++ .|..|++|+++... .++
T Consensus 240 --------------------------------------~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s-~ve 280 (479)
T KOG0299|consen 240 --------------------------------------FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS-YVE 280 (479)
T ss_pred --------------------------------------ccccccceeeeeeecCccceeeeecCCceEEEehhHhH-HHH
Confidence 36899999999998877777776 79999999998433 222
Q ss_pred ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 348 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 348 (513)
++.+|++.|..+.....+ +.+-+|+.|+++++|++..... . ++.++.+.+-|++|
T Consensus 281 -------tlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~eesq-----l------------ifrg~~~sidcv~~ 335 (479)
T KOG0299|consen 281 -------TLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEESQ-----L------------IFRGGEGSIDCVAF 335 (479)
T ss_pred -------HHhCCccceeeechhccc-ceEEeccccceeEEEeccccce-----e------------eeeCCCCCeeeEEE
Confidence 678999999999988877 7777777999999999843221 1 24455578999999
Q ss_pred eecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287 349 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 427 (513)
Q Consensus 349 sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 427 (513)
-. ...+++|++ |.|.+|++.. .+++.+.....+..+....+. ..+.|++++..|..+++++|+.+|.|++|.+.
T Consensus 336 In-~~HfvsGSdnG~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~---~~~Witsla~i~~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 336 IN-DEHFVSGSDNGSIALWSLLK-KKPLFTSRLAHGVIPELDPVN---GNFWITSLAVIPGSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred ec-ccceeeccCCceEEEeeecc-cCceeEeeccccccCCccccc---cccceeeeEecccCceEEecCCCCceEEEEec
Confidence 84 566777776 9999999996 888877654443322221111 11457799999999999999999999999998
Q ss_pred CCCccc---eeecCCCCceeEEEEcCCCCceeee
Q 010287 428 EGSAES---TTLEASKNPMRRQVQTPSRPSRPLG 458 (513)
Q Consensus 428 ~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~ 458 (513)
.+-..+ ..+. -.+.|++++|+++|+.+++|
T Consensus 411 ~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 411 DGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred CCccccceeeecc-cccEEEEEEEccCCCEEEEe
Confidence 873322 2232 45679999999999977665
No 87
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=1.1e-25 Score=197.27 Aligned_cols=359 Identities=13% Similarity=0.204 Sum_probs=245.6
Q ss_pred ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (513)
Q Consensus 34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (513)
.+.-|.|++|.++|+ ++||..+|.|.||+..+.+ +.+...+|+ +
T Consensus 245 ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~-----------------------~~k~~~aH~------------g 288 (626)
T KOG2106|consen 245 EKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNR-----------------------ISKQVHAHD------------G 288 (626)
T ss_pred cceEEEEEEEcCCCC-EEeecCCceEEEEeCCCce-----------------------EEeEeeecC------------C
Confidence 347899999999986 7899999999999975443 223334888 8
Q ss_pred cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (513)
Q Consensus 114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (513)
.|.+++... +| .|++|+.|+.|..||- .-+ ...+....+. -+......+.+.-+
T Consensus 289 gv~~L~~lr--~G-tllSGgKDRki~~Wd~-~y~--k~r~~elPe~-------------~G~iRtv~e~~~di------- 342 (626)
T KOG2106|consen 289 GVFSLCMLR--DG-TLLSGGKDRKIILWDD-NYR--KLRETELPEQ-------------FGPIRTVAEGKGDI------- 342 (626)
T ss_pred ceEEEEEec--Cc-cEeecCccceEEeccc-ccc--ccccccCchh-------------cCCeeEEecCCCcE-------
Confidence 999999954 55 5777999999999992 222 2222222110 00011111111111
Q ss_pred CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc
Q 010287 194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 272 (513)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~ 272 (513)
+.+...+.|..=.+... ......+|....+.++.+|+.+.++++ .|+.+++|+ ..+..+..
T Consensus 343 -----~vGTtrN~iL~Gt~~~~--------f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~--- 404 (626)
T KOG2106|consen 343 -----LVGTTRNFILQGTLENG--------FTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK--- 404 (626)
T ss_pred -----EEeeccceEEEeeecCC--------ceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE---
Confidence 22222222221111110 111236888899999999999999988 799999999 23333331
Q ss_pred CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC
Q 010287 273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 352 (513)
Q Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~ 352 (513)
....++.|+.|+|.+ .++.|+..|...+.|.++..+.. .... ..++++++|+|+|
T Consensus 405 ------~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~-----~~~d------------~~~ls~v~ysp~G 459 (626)
T KOG2106|consen 405 ------IIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVT-----IHTD------------NEQLSVVRYSPDG 459 (626)
T ss_pred ------EecCceeEeeccCcc--eEEEeeccceEEEEecccceeEE-----EEec------------CCceEEEEEcCCC
Confidence 236778999999997 89999999999999998855421 1111 2679999999999
Q ss_pred CEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc
Q 010287 353 RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 431 (513)
Q Consensus 353 ~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 431 (513)
.+||.|+. +.|+||.+..++........+.. .+++.+.||+|+++|.+-+.|-.|..|....- +
T Consensus 460 ~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g--------------s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~-~ 524 (626)
T KOG2106|consen 460 AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG--------------SPITHLDWSSDSQFLVSNSGDYEILYWKPSEC-K 524 (626)
T ss_pred CEEEEecCCCeEEEEEECCCCcEEEEeeeecC--------------ceeEEeeecCCCceEEeccCceEEEEEccccC-c
Confidence 99999985 99999999876666655544433 12679999999999999999999999954432 2
Q ss_pred cceeec------------------CCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEE
Q 010287 432 ESTTLE------------------ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW 493 (513)
Q Consensus 432 ~~~~~~------------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 493 (513)
.....+ .+...+..++.+..++.+|+|...|.|++.+--.............|++.|++++|
T Consensus 525 ~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~F 604 (626)
T KOG2106|consen 525 QITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAF 604 (626)
T ss_pred ccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEE
Confidence 111111 34455667777888999999999999999322222211223344569999999999
Q ss_pred eCCCCEEE-EEcCCcEEEEe
Q 010287 494 HPSENSIA-CAASNSLYMYY 512 (513)
Q Consensus 494 sp~~~~la-~~~~~~~~i~~ 512 (513)
.-+...|. ++.|.++..|.
T Consensus 605 l~~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 605 LCKDSHLISTGKDTSIMQWR 624 (626)
T ss_pred eeCCceEEecCCCceEEEEE
Confidence 98877776 55588888884
No 88
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=215.72 Aligned_cols=297 Identities=19% Similarity=0.288 Sum_probs=219.8
Q ss_pred cccccccEE---EEEEcC-CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccc
Q 010287 31 EVQEVDIIS---AIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (513)
Q Consensus 31 ~~~h~~~V~---~v~~sp-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (513)
+.+|...|. ++..+. .++||.||++||.|++|+....... |+-.+...++.|.
T Consensus 17 e~qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~-----------------~s~~~~asme~Hs------ 73 (735)
T KOG0308|consen 17 EKQNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNE-----------------PSTPYIASMEHHS------ 73 (735)
T ss_pred hhhccccccchhhccccCCCCceEEecCCCceEEEeccccccCC-----------------cccchhhhhhhhH------
Confidence 346777777 566654 4778999999999999997654321 2222445667777
Q ss_pred ccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (513)
Q Consensus 107 ~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 186 (513)
+.|+.+..+ .+++.|+++|.|-+|++|+...+.....
T Consensus 74 ------DWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~~~~~~c~----------------------------------- 110 (735)
T KOG0308|consen 74 ------DWVNDIILC--GNGKTLISASSDTTVKVWNAHKDNTFCM----------------------------------- 110 (735)
T ss_pred ------hHHhhHHhh--cCCCceEEecCCceEEEeecccCcchhH-----------------------------------
Confidence 999999984 4777899999999999999876531110
Q ss_pred ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEe-ccCCCEEEEE-cCCeEEEEEcCCCc
Q 010287 187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISN-NSDGETFISA-DDLRINLWNLEISN 264 (513)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~-~d~~i~vwd~~~~~ 264 (513)
. .+..|.+.|.|+++ .++...+++| -|+.|++||++++.
T Consensus 111 --------------------------------------s-tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~ 151 (735)
T KOG0308|consen 111 --------------------------------------S-TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGT 151 (735)
T ss_pred --------------------------------------h-hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcc
Confidence 0 03678899999999 7788888888 49999999999763
Q ss_pred c-eeeecc-cCccccc-cccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccc
Q 010287 265 Q-SFNIVD-VKPANME-DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 341 (513)
Q Consensus 265 ~-~~~~~~-~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (513)
. .....+ ..-..+. ++...|++++.++.+ ..|++|+..+.+++||.++++... . +.+|..
T Consensus 152 ~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~kim----k------------LrGHTd 214 (735)
T KOG0308|consen 152 ATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIM----K------------LRGHTD 214 (735)
T ss_pred hhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEecccccccee----e------------eecccc
Confidence 2 111111 1111333 788999999999999 999999999999999999977532 2 456778
Q ss_pred cEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCc
Q 010287 342 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 420 (513)
Q Consensus 342 ~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 420 (513)
.|..+..++||..+++++ ||+|++||+.. .+++.++..|... |+++..+|+=.++++|+.||.
T Consensus 215 NVr~ll~~dDGt~~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~---------------VWaL~~~~sf~~vYsG~rd~~ 278 (735)
T KOG0308|consen 215 NVRVLLVNDDGTRLLSASSDGTIRLWDLGQ-QRCLATYIVHKEG---------------VWALQSSPSFTHVYSGGRDGN 278 (735)
T ss_pred ceEEEEEcCCCCeEeecCCCceEEeeeccc-cceeeeEEeccCc---------------eEEEeeCCCcceEEecCCCCc
Confidence 899999999999999876 59999999996 8999999999876 678889999999999999999
Q ss_pred EEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 421 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 421 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
|..=|+.+..+ ...+.....||..+.......-+-++..|+.|+-
T Consensus 279 i~~Tdl~n~~~-~tlick~daPv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 279 IYRTDLRNPAK-STLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred EEecccCCchh-heEeecCCCchhhhhhccccCCceeeecccccee
Confidence 99999987522 2333333445555554433333334445555554
No 89
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.9e-26 Score=189.59 Aligned_cols=308 Identities=13% Similarity=0.186 Sum_probs=208.8
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
...+|.+.|++++|+.||++|||.+.|+.|+||++.+.... ++++... .+
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~------------------eHr~~R~------------nv 130 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK------------------EHRCIRQ------------NV 130 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhh------------------hhhHhhc------------cc
Confidence 46689999999999999999999999999999998764431 1111110 11
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
+. +.-+.+.|.|+.. ..+++.....++++|.+...+- |+.
T Consensus 131 e~-dhpT~V~FapDc~-s~vv~~~~g~~l~vyk~~K~~d----------------------------------G~~---- 170 (420)
T KOG2096|consen 131 EY-DHPTRVVFAPDCK-SVVVSVKRGNKLCVYKLVKKTD----------------------------------GSG---- 170 (420)
T ss_pred cC-CCceEEEECCCcc-eEEEEEccCCEEEEEEeeeccc----------------------------------CCC----
Confidence 11 3468899976332 3444456677899998754321 000
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~ 268 (513)
.-...-|| . ..+-..|.-.+..+-...++++|+++ .|..|.+|++. ++.+ .
T Consensus 171 --------------~~~~v~~D--~----------~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L-~ 222 (420)
T KOG2096|consen 171 --------------SHHFVHID--N----------LEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLL-Q 222 (420)
T ss_pred --------------Cccccccc--c----------cccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Ccee-e
Confidence 00000000 0 00124566667777778889999999 69999999998 4433 3
Q ss_pred ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccc--ccccceeeccccCCCCccccccccccEEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL--CDTHSKLFEEQEAPGTRSFFTEIIASISDI 346 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 346 (513)
.+......-+..+.+|+| +++++++.---|++|.+--++. .+.-.+.| .+++|.+.|..+
T Consensus 223 -------~idtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf----------~LkGH~saV~~~ 284 (420)
T KOG2096|consen 223 -------SIDTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF----------SLKGHQSAVLAA 284 (420)
T ss_pred -------eeccccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhh----------eeccchhheeee
Confidence 334445556778899999 9999999999999998643221 11111222 267888999999
Q ss_pred EEeecCCEEEEEe-CCeEEEEEccCC------CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC
Q 010287 347 KFARNGRHILSRD-YMTLKLWDINMD------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 419 (513)
Q Consensus 347 ~~sp~~~~l~~~~-~~~v~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 419 (513)
+|+|+.+.+++.+ ||.++|||++-. .+.+++....... ..-.+ ..+.++|.|+.|+.+. ..
T Consensus 285 aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~a----------ag~~p-~RL~lsP~g~~lA~s~-gs 352 (420)
T KOG2096|consen 285 AFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHA----------AGSEP-VRLELSPSGDSLAVSF-GS 352 (420)
T ss_pred eeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhh----------cCCCc-eEEEeCCCCcEEEeec-CC
Confidence 9999999999987 599999998641 1112221110000 00001 1689999999988655 45
Q ss_pred cEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 420 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 420 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.+++|..++++.....-..|...|.++.|+++|+++++++ |+.+++
T Consensus 353 ~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv 398 (420)
T KOG2096|consen 353 DLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRV 398 (420)
T ss_pred ceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeee
Confidence 7999999988555455568999999999999999999997 777777
No 90
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=5.2e-28 Score=200.39 Aligned_cols=284 Identities=16% Similarity=0.216 Sum_probs=221.8
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
+.+.|..|+| |+.+|++++.||.|.+||..+|++..-.+++...
T Consensus 214 Sh~EcA~FSP--DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd---------------------------------- 257 (508)
T KOG0275|consen 214 SHVECARFSP--DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD---------------------------------- 257 (508)
T ss_pred cchhheeeCC--CCceEeeccccceeeeehhccchhhhhhhhhhhc----------------------------------
Confidence 5688999955 8899999999999999999999866544333211
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
.+.-+...|.|++|+.|...+++| .||.|++|.++++..+.
T Consensus 258 ----------------------------------~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR---- 299 (508)
T KOG0275|consen 258 ----------------------------------NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR---- 299 (508)
T ss_pred ----------------------------------ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH----
Confidence 023566789999999999999999 69999999999887553
Q ss_pred cCcccc-ccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee
Q 010287 272 VKPANM-EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 350 (513)
Q Consensus 272 ~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp 350 (513)
.+ ..|...|+|+.|+.|+ ..+++++.|.++++.-+.+|+.. +. +.+|.+.|+...|.+
T Consensus 300 ----rFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~L----KE------------frGHsSyvn~a~ft~ 358 (508)
T KOG0275|consen 300 ----RFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCL----KE------------FRGHSSYVNEATFTD 358 (508)
T ss_pred ----HhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhH----HH------------hcCccccccceEEcC
Confidence 33 4799999999999998 89999999999999999998863 33 566778999999999
Q ss_pred cCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC-CCCEEEEEeCCCcEEEEecCC
Q 010287 351 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCSE 428 (513)
Q Consensus 351 ~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~ 428 (513)
||..+++++ ||+|++|+.++ .+++.+++...... +|..+-.-| +...++++...++|++-++.
T Consensus 359 dG~~iisaSsDgtvkvW~~Kt-teC~~Tfk~~~~d~-------------~vnsv~~~PKnpeh~iVCNrsntv~imn~q- 423 (508)
T KOG0275|consen 359 DGHHIISASSDGTVKVWHGKT-TECLSTFKPLGTDY-------------PVNSVILLPKNPEHFIVCNRSNTVYIMNMQ- 423 (508)
T ss_pred CCCeEEEecCCccEEEecCcc-hhhhhhccCCCCcc-------------cceeEEEcCCCCceEEEEcCCCeEEEEecc-
Confidence 999999976 59999999997 88888886544321 133555555 45688899999999999987
Q ss_pred CCccceeec---CCCCceeEEEEcCCCCceeeecCCCeEEE--ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEE
Q 010287 429 GSAESTTLE---ASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 503 (513)
Q Consensus 429 ~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~ 503 (513)
++....+. ...+..-+.+.+|.|.++.+.++|+.++- +..+.+. ....-|...+..++-||..+.||+-
T Consensus 424 -GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE-----~tl~VhEkdvIGl~HHPHqNllAsY 497 (508)
T KOG0275|consen 424 -GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLE-----RTLPVHEKDVIGLTHHPHQNLLASY 497 (508)
T ss_pred -ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCcee-----eeeecccccccccccCcccchhhhh
Confidence 34444433 23455668889999999999999999987 2233222 2333478899999999999999988
Q ss_pred cCC-cEEEEe
Q 010287 504 ASN-SLYMYY 512 (513)
Q Consensus 504 ~~~-~~~i~~ 512 (513)
++| -+.+|.
T Consensus 498 sEDgllKLWk 507 (508)
T KOG0275|consen 498 SEDGLLKLWK 507 (508)
T ss_pred cccchhhhcC
Confidence 854 455553
No 91
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=6.8e-26 Score=187.42 Aligned_cols=297 Identities=15% Similarity=0.216 Sum_probs=201.3
Q ss_pred ccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCccc
Q 010287 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (513)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (513)
..+.+|. +.|++++| +.||.+|++++.|++|++|+++....+...-+
T Consensus 80 ~~LKgH~------------~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~------------------- 126 (420)
T KOG2096|consen 80 SVLKGHK------------KEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKEHRCI------------------- 126 (420)
T ss_pred hhhhccC------------CceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhhhhHh-------------------
Confidence 4577888 88999999 67999999999999999999987432211000
Q ss_pred ccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--c
Q 010287 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D 251 (513)
Q Consensus 174 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~ 251 (513)
+. .-.-+..+.+.|.||.+-++.+ .
T Consensus 127 ---------------------------------------------------R~--nve~dhpT~V~FapDc~s~vv~~~~ 153 (420)
T KOG2096|consen 127 ---------------------------------------------------RQ--NVEYDHPTRVVFAPDCKSVVVSVKR 153 (420)
T ss_pred ---------------------------------------------------hc--cccCCCceEEEECCCcceEEEEEcc
Confidence 00 0111235678999998877765 6
Q ss_pred CCeEEEEEcCCCc---ceeeecccCcccc-ccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287 252 DLRINLWNLEISN---QSFNIVDVKPANM-EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 327 (513)
Q Consensus 252 d~~i~vwd~~~~~---~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 327 (513)
..++++|.+...+ .....+......+ +.|...+..+-....+ .+|++++.|..|.+|+++ |+.. ..++..
T Consensus 154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L----~~idtn 227 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLL----QSIDTN 227 (420)
T ss_pred CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Ccee----eeeccc
Confidence 8899999775322 1111111111111 3466677777777777 999999999999999998 5542 222222
Q ss_pred cCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCC-------CCCeeeeecccccccccccccccCCccc
Q 010287 328 EAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMD-------SGPVATFQVHEHLRPKLCDLYENDSIFD 399 (513)
Q Consensus 328 ~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (513)
. ..-+..+.||+|++++++.- -.|++|.+-.. -..+..+++|...
T Consensus 228 q------------~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~sa--------------- 280 (420)
T KOG2096|consen 228 Q------------SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSA--------------- 280 (420)
T ss_pred c------------ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhh---------------
Confidence 1 23466789999999999876 88999997531 1234566777765
Q ss_pred eeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccc---eeec-------CCCCceeEEEEcCCCCceeeecCCCeEEEecC
Q 010287 400 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES---TTLE-------ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG 469 (513)
Q Consensus 400 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~ 469 (513)
|+.++|+++.+.+++.+.||++++||..-....- ..++ .....-..+..+|+++.||... ...++++..
T Consensus 281 V~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~s 359 (420)
T KOG2096|consen 281 VLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFAS 359 (420)
T ss_pred eeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEc
Confidence 5699999999999999999999999976432111 1111 2222333899999999988653 334444211
Q ss_pred CCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287 470 ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 512 (513)
.+-. .+.....-|+..|.+++|+|+|+++|++++..+.++.
T Consensus 360 e~g~--~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 360 EDGK--DYPELEDIHSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred ccCc--cchhHHHhhcCceeeEEecCCCcEEeeecceeeeeec
Confidence 1111 1111122379999999999999999999998887763
No 92
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3e-25 Score=201.51 Aligned_cols=332 Identities=15% Similarity=0.215 Sum_probs=244.5
Q ss_pred cccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccc
Q 010287 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (513)
Q Consensus 35 ~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (513)
...|+|++|+.+.+.||.+-.+|.|-||++... +-....+.+++ +..
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~----------------------w~~~~vi~g~~-----------drs 71 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN----------------------WFLEPVIHGPE-----------DRS 71 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCC----------------------ceeeEEEecCC-----------CCc
Confidence 579999999999999999999999999997542 22334455655 278
Q ss_pred ceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCC
Q 010287 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (513)
Q Consensus 115 i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (513)
|.+++|+ ++..|++.+.+|+|.-||+.+++.+....
T Consensus 72 IE~L~W~---e~~RLFS~g~sg~i~EwDl~~lk~~~~~d----------------------------------------- 107 (691)
T KOG2048|consen 72 IESLAWA---EGGRLFSSGLSGSITEWDLHTLKQKYNID----------------------------------------- 107 (691)
T ss_pred eeeEEEc---cCCeEEeecCCceEEEEecccCceeEEec-----------------------------------------
Confidence 9999996 35689999999999999999887544321
Q ss_pred CCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccC
Q 010287 195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 273 (513)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~ 273 (513)
...+.|++++.+|.+..++.| +||.+..++...+...+..
T Consensus 108 -----------------------------------~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r---- 148 (691)
T KOG2048|consen 108 -----------------------------------SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR---- 148 (691)
T ss_pred -----------------------------------CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe----
Confidence 223569999999999999988 8998877777755544332
Q ss_pred ccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC
Q 010287 274 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 353 (513)
Q Consensus 274 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~ 353 (513)
.+...+++|.+++|+|++ ..+++|+.||.|++||..++.......+.+..-.. +-..-|+++.|-.+ .
T Consensus 149 --~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k--------~~~~iVWSv~~Lrd-~ 216 (691)
T KOG2048|consen 149 --SLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSK--------REPTIVWSVLFLRD-S 216 (691)
T ss_pred --ecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeeccccccc--------CCceEEEEEEEeec-C
Confidence 344457899999999999 88999999999999999987753311111111110 01135777777744 5
Q ss_pred EEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc
Q 010287 354 HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 432 (513)
Q Consensus 354 ~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 432 (513)
.|++|+. |+|++||... +..++....|... |.+++..+++.++++++-|+.|..|...+.+..
T Consensus 217 tI~sgDS~G~V~FWd~~~-gTLiqS~~~h~ad---------------Vl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~ 280 (691)
T KOG2048|consen 217 TIASGDSAGTVTFWDSIF-GTLIQSHSCHDAD---------------VLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE 280 (691)
T ss_pred cEEEecCCceEEEEcccC-cchhhhhhhhhcc---------------eeEEEEcCCCCeEEEccCCCceEEEEecCCccc
Confidence 6777876 9999999996 8888888888765 569999999999999999999999988876442
Q ss_pred ---ceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCC------------CCccc---------------------
Q 010287 433 ---STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD------------NSALD--------------------- 476 (513)
Q Consensus 433 ---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~------------~~~~~--------------------- 476 (513)
...-..|...+++++..++ .+.+|+.|..+.+....+ +.+..
T Consensus 281 wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lw 358 (691)
T KOG2048|consen 281 WVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLW 358 (691)
T ss_pred eeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccce
Confidence 2333478888999999887 889999999988700000 00000
Q ss_pred cCCcc---------------ccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287 477 ANGNA---------------FDFSMKLLHLAWHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 477 ~~~~~---------------~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 512 (513)
..+.. ..-...|.+.+.||||++||.++-..++||.
T Consensus 359 rlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~ 409 (691)
T KOG2048|consen 359 RLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYR 409 (691)
T ss_pred eccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEE
Confidence 00000 0113468999999999999999877777764
No 93
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=5.4e-26 Score=232.63 Aligned_cols=257 Identities=14% Similarity=0.236 Sum_probs=189.9
Q ss_pred ccccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 32 VQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 32 ~~h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
..+...|.+++|+|. +.+||+++.||+|+|||+.+++. ...+.+|.
T Consensus 529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~-----------------------~~~~~~H~---------- 575 (793)
T PLN00181 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL-----------------------VTEMKEHE---------- 575 (793)
T ss_pred ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE-----------------------EEEecCCC----------
Confidence 345678999999885 78999999999999999876542 35567888
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
+.|++++|+| .++.+|++++.|++|++||+.++......
T Consensus 576 --~~V~~l~~~p-~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~-------------------------------------- 614 (793)
T PLN00181 576 --KRVWSIDYSS-ADPTLLASGSDDGSVKLWSINQGVSIGTI-------------------------------------- 614 (793)
T ss_pred --CCEEEEEEcC-CCCCEEEEEcCCCEEEEEECCCCcEEEEE--------------------------------------
Confidence 8899999975 24579999999999999999876543221
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEec-cCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNN-SDGETFISA-DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~-~d~~i~vwd~~~~~~~~~ 268 (513)
.. ...+.++.|+ +++.+|++| .|+.|++||++.......
T Consensus 615 --------------------------------------~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~ 655 (793)
T PLN00181 615 --------------------------------------KT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLC 655 (793)
T ss_pred --------------------------------------ec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccce
Confidence 11 1347889995 578999998 799999999986543222
Q ss_pred ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccc--cccceeeccccCCCCccccccccccEEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC--DTHSKLFEEQEAPGTRSFFTEIIASISDI 346 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 346 (513)
.+.+|...|.++.|. ++ ..|++++.|+.|++||++.+... ...+.. +.+|...+.++
T Consensus 656 -------~~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~------------~~gh~~~i~~v 714 (793)
T PLN00181 656 -------TMIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGINETPLHS------------FMGHTNVKNFV 714 (793)
T ss_pred -------EecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccccCCcceEE------------EcCCCCCeeEE
Confidence 456899999999997 45 78999999999999999754210 111222 45566789999
Q ss_pred EEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccc-cccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEE
Q 010287 347 KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH-LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 424 (513)
Q Consensus 347 ~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 424 (513)
+|+|++.+|++|+. +.|++|+... ..++..+..... ...... ....-..|.+++|+|++.+|++|+.||.|++|
T Consensus 715 ~~s~~~~~lasgs~D~~v~iw~~~~-~~~~~s~~~~~~~~~~~~~---~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~ 790 (793)
T PLN00181 715 GLSVSDGYIATGSETNEVFVYHKAF-PMPVLSYKFKTIDPVSGLE---VDDASQFISSVCWRGQSSTLVAANSTGNIKIL 790 (793)
T ss_pred EEcCCCCEEEEEeCCCEEEEEECCC-CCceEEEecccCCcccccc---cCCCCcEEEEEEEcCCCCeEEEecCCCcEEEE
Confidence 99999999999885 9999999875 444333321110 000000 00111136699999999999999999999999
Q ss_pred ec
Q 010287 425 GC 426 (513)
Q Consensus 425 d~ 426 (513)
++
T Consensus 791 ~~ 792 (793)
T PLN00181 791 EM 792 (793)
T ss_pred ec
Confidence 86
No 94
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8e-27 Score=217.50 Aligned_cols=203 Identities=13% Similarity=0.171 Sum_probs=154.2
Q ss_pred eccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287 228 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 306 (513)
Q Consensus 228 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 306 (513)
+.||.+.|..+.|+.++ +|+++ .|.+|++|++.....+ ..-.|.+.|+|++|+|.+.++|++|+.|+.|
T Consensus 365 f~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL---------~~F~HndfVTcVaFnPvDDryFiSGSLD~Kv 434 (712)
T KOG0283|consen 365 FKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECL---------KVFSHNDFVTCVAFNPVDDRYFISGSLDGKV 434 (712)
T ss_pred hhccchhheecccccCC-eeEeccccccEEeecCCCccee---------eEEecCCeeEEEEecccCCCcEeecccccce
Confidence 47999999999999876 55555 7999999999865543 2346999999999999877999999999999
Q ss_pred EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccc
Q 010287 307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR 385 (513)
Q Consensus 307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~ 385 (513)
|||++...+.. .+.. ...-|++++|.|||++.+.|+. |.+++|+... .+.......+....
T Consensus 435 RiWsI~d~~Vv-----~W~D------------l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~-lk~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 435 RLWSISDKKVV-----DWND------------LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEG-LKLVSDFHIRLHNK 496 (712)
T ss_pred EEeecCcCeeE-----eehh------------hhhhheeEEeccCCceEEEEEeccEEEEEEccC-CeEEEeeeEeeccC
Confidence 99999876642 2221 1257999999999999999997 9999999884 55544443332211
Q ss_pred cccccccccCCccceeeEEEeCCC-CEEEEEeCCCcEEEEecCCCCccceeecCCCCc--eeEEEEcCCCCceeeecCCC
Q 010287 386 PKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEASKNP--MRRQVQTPSRPSRPLGSLSG 462 (513)
Q Consensus 386 ~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~ 462 (513)
.... +. -|+.+.|.|.. ..|++.+.|..|+|||.... .++..+++..+. -....|+.+|++|+++++|.
T Consensus 497 Kk~~----~~---rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 497 KKKQ----GK---RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS 568 (712)
T ss_pred cccc----Cc---eeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence 1000 01 26788888744 34677788999999999755 555777766543 23567888999999999999
Q ss_pred eEEE
Q 010287 463 VVRR 466 (513)
Q Consensus 463 ~i~~ 466 (513)
.|++
T Consensus 569 ~VYi 572 (712)
T KOG0283|consen 569 WVYI 572 (712)
T ss_pred eEEE
Confidence 9999
No 95
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.4e-25 Score=173.35 Aligned_cols=317 Identities=14% Similarity=0.155 Sum_probs=220.8
Q ss_pred CcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceec
Q 010287 101 PEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180 (513)
Q Consensus 101 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (513)
+.|..+..++-...|.+++|+| +|.+.+++++.+++++.....-. .....+..+
T Consensus 21 ~~f~~i~~l~dsqairav~fhp--~g~lyavgsnskt~ric~yp~l~--~~r~~hea~---------------------- 74 (350)
T KOG0641|consen 21 KHFEAINILEDSQAIRAVAFHP--AGGLYAVGSNSKTFRICAYPALI--DLRHAHEAA---------------------- 74 (350)
T ss_pred cceEEEEEecchhheeeEEecC--CCceEEeccCCceEEEEcccccc--Ccccccccc----------------------
Confidence 4455566666668999999977 77899999999999987543211 000000000
Q ss_pred cCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEE
Q 010287 181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWN 259 (513)
Q Consensus 181 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd 259 (513)
.+....+....+.|.+.|.|.+|+|+|++|++| .|++|++.-
T Consensus 75 -------------------------------------~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~ 117 (350)
T KOG0641|consen 75 -------------------------------------KQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLP 117 (350)
T ss_pred -------------------------------------cCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEe
Confidence 000011112236789999999999999999999 799999987
Q ss_pred cCCCcceeeecccCccccccccCCeEEEEEeCC---CCeEEEEEeC-CCcEEEEEcCCcccccccceeeccccCCCCccc
Q 010287 260 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSS-KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF 335 (513)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (513)
++.......- ....+.-|.+.|..++|-.+ +..+|++++. |..|.+-|..+++. ...
T Consensus 118 fn~dt~~~~g---~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~----~~a------------ 178 (350)
T KOG0641|consen 118 FNADTCNATG---HDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG----FHA------------ 178 (350)
T ss_pred cccccccccC---cceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc----cee------------
Confidence 7644322111 11256779999999999643 3256666554 66777778777665 222
Q ss_pred cccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecc--cccccccccccccCCccceeeEEEeCCCCEE
Q 010287 336 FTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVH--EHLRPKLCDLYENDSIFDKFECCLSGDGGRV 412 (513)
Q Consensus 336 ~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 412 (513)
+.+|.+.|.++ ++-++-++++|+. .+|++||++- ...+.++... ..... -..|.+++..|.|++|
T Consensus 179 ~sghtghilal-yswn~~m~~sgsqdktirfwdlrv-~~~v~~l~~~~~~~gle----------ssavaav~vdpsgrll 246 (350)
T KOG0641|consen 179 LSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRV-NSCVNTLDNDFHDGGLE----------SSAVAAVAVDPSGRLL 246 (350)
T ss_pred ecCCcccEEEE-EEecCcEEEccCCCceEEEEeeec-cceeeeccCcccCCCcc----------cceeEEEEECCCccee
Confidence 45666777765 4567899999885 9999999996 5555555322 11110 1125689999999999
Q ss_pred EEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCc-cccccCCeeEE
Q 010287 413 ATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGN-AFDFSMKLLHL 491 (513)
Q Consensus 413 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~~~~i~~~ 491 (513)
++|-.|....+||++.+ ..++.+..|...|+++.|+|.-.|+++++.|..|++.+-......++... .-+|...+..+
T Consensus 247 ~sg~~dssc~lydirg~-r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~ 325 (350)
T KOG0641|consen 247 ASGHADSSCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQC 325 (350)
T ss_pred eeccCCCceEEEEeeCC-ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEE
Confidence 99999999999999976 66689999999999999999999999999999999922211111122222 33789999999
Q ss_pred EEeCCCCEEE-EEcCCcEEEEe
Q 010287 492 AWHPSENSIA-CAASNSLYMYY 512 (513)
Q Consensus 492 ~~sp~~~~la-~~~~~~~~i~~ 512 (513)
.|+|..--++ +..+....+|.
T Consensus 326 rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 326 RWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred EecCccceeeeccCcceEEEec
Confidence 9999976555 44477777763
No 96
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.5e-25 Score=212.51 Aligned_cols=263 Identities=18% Similarity=0.251 Sum_probs=179.1
Q ss_pred ecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEe
Q 010287 53 GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLS 132 (513)
Q Consensus 53 g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~ 132 (513)
|+.++.|++|+..... ....+.+|. +.|.+++|+|. ++.+|++|
T Consensus 50 GG~~gvI~L~~~~r~~-----------------------~v~~L~gH~------------~~V~~lafsP~-~~~lLASg 93 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP-----------------------PVIKLKGHT------------SSILDLQFNPC-FSEILASG 93 (568)
T ss_pred CCceeEEEeeecCCCc-----------------------eEEEEcCCC------------CCEEEEEEcCC-CCCEEEEE
Confidence 5567778888854322 335678898 88999999773 25699999
Q ss_pred ecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceee
Q 010287 133 TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVV 212 (513)
Q Consensus 133 s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 212 (513)
+.|++|++||+.++..... ..
T Consensus 94 S~DgtIrIWDi~t~~~~~~-~i---------------------------------------------------------- 114 (568)
T PTZ00420 94 SEDLTIRVWEIPHNDESVK-EI---------------------------------------------------------- 114 (568)
T ss_pred eCCCeEEEEECCCCCcccc-cc----------------------------------------------------------
Confidence 9999999999976421000 00
Q ss_pred ccCCcccccceeeEeeccccCCeEEEEeccCCCEE-EEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe
Q 010287 213 TSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH 290 (513)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 290 (513)
..+. ..+.+|...|.+++|+|++..+ +++ .|++|++||++++..... +. |...|.+++|+
T Consensus 115 --------~~p~-~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~--------i~-~~~~V~Slsws 176 (568)
T PTZ00420 115 --------KDPQ-CILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ--------IN-MPKKLSSLKWN 176 (568)
T ss_pred --------ccce-EEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE--------Ee-cCCcEEEEEEC
Confidence 0000 0146888999999999998765 566 699999999997764432 22 45679999999
Q ss_pred CCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C----CeEEE
Q 010287 291 PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y----MTLKL 365 (513)
Q Consensus 291 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~----~~v~i 365 (513)
|+| .+|++++.|+.|++||++++.. +..+.++..... ...+....|++++.+|++++ + +.|+|
T Consensus 177 pdG-~lLat~s~D~~IrIwD~Rsg~~----i~tl~gH~g~~~-------s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkL 244 (568)
T PTZ00420 177 IKG-NLLSGTCVGKHMHIIDPRKQEI----ASSFHIHDGGKN-------TKNIWIDGLGGDDNYILSTGFSKNNMREMKL 244 (568)
T ss_pred CCC-CEEEEEecCCEEEEEECCCCcE----EEEEecccCCce-------eEEEEeeeEcCCCCEEEEEEcCCCCccEEEE
Confidence 999 8999999999999999998765 333443321100 01123334568888888754 3 37999
Q ss_pred EEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeE
Q 010287 366 WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRR 445 (513)
Q Consensus 366 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 445 (513)
||++....++..+..+..... +......+++.++++|+.|+.|++|++..+......--.+..+...
T Consensus 245 WDlr~~~~pl~~~~ld~~~~~-------------L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g 311 (568)
T PTZ00420 245 WDLKNTTSALVTMSIDNASAP-------------LIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRS 311 (568)
T ss_pred EECCCCCCceEEEEecCCccc-------------eEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccc
Confidence 999965667766544433210 1122234568889999999999999998663221111235678889
Q ss_pred EEEcCCCC
Q 010287 446 QVQTPSRP 453 (513)
Q Consensus 446 ~~~~~~~~ 453 (513)
++|.|...
T Consensus 312 ~~f~Pkr~ 319 (568)
T PTZ00420 312 FGFLPKQI 319 (568)
T ss_pred eEEccccc
Confidence 99998744
No 97
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.2e-27 Score=201.07 Aligned_cols=284 Identities=12% Similarity=0.185 Sum_probs=212.5
Q ss_pred EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (513)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (513)
|...+.||. +.|.+++=+|..- ..+++|+.||.|++||+.+..+...
T Consensus 58 Fv~~L~gHr------------dGV~~lakhp~~l-s~~aSGs~DG~VkiWnlsqR~~~~~-------------------- 104 (433)
T KOG0268|consen 58 FVGSLDGHR------------DGVSCLAKHPNKL-STVASGSCDGEVKIWNLSQRECIRT-------------------- 104 (433)
T ss_pred chhhccccc------------cccchhhcCcchh-hhhhccccCceEEEEehhhhhhhhe--------------------
Confidence 445567887 9999999977432 4789999999999999988765432
Q ss_pred ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEc
Q 010287 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD 251 (513)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 251 (513)
+.+|.+.|..|++.. +..|.+|+
T Consensus 105 --------------------------------------------------------f~AH~G~V~Gi~v~~-~~~~tvgd 127 (433)
T KOG0268|consen 105 --------------------------------------------------------FKAHEGLVRGICVTQ-TSFFTVGD 127 (433)
T ss_pred --------------------------------------------------------eecccCceeeEEecc-cceEEecC
Confidence 368888899999987 44555568
Q ss_pred CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCC
Q 010287 252 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 331 (513)
Q Consensus 252 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 331 (513)
|.+|+.|.++.. ... ++.+ ...+..+.-+..+ ..+++|++ .|.|||...... +..+.-..
T Consensus 128 DKtvK~wk~~~~--p~~-------tilg-~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~P----v~smswG~--- 187 (433)
T KOG0268|consen 128 DKTVKQWKIDGP--PLH-------TILG-KSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNP----VSSMSWGA--- 187 (433)
T ss_pred CcceeeeeccCC--cce-------eeec-ccccccccccccc-ccccccCc--eeeecccccCCc----cceeecCC---
Confidence 999999998742 222 2222 4456677776666 78888876 688999865444 33333222
Q ss_pred CccccccccccEEEEEEeecCCE-EEEE-eCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC
Q 010287 332 TRSFFTEIIASISDIKFARNGRH-ILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 409 (513)
Q Consensus 332 ~~~~~~~~~~~v~~i~~sp~~~~-l~~~-~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 409 (513)
..|.++.|+|-... |+++ +|+.|.+||++. ..+++.+...... ..++|+|.+
T Consensus 188 ---------Dti~svkfNpvETsILas~~sDrsIvLyD~R~-~~Pl~KVi~~mRT----------------N~IswnPea 241 (433)
T KOG0268|consen 188 ---------DSISSVKFNPVETSILASCASDRSIVLYDLRQ-ASPLKKVILTMRT----------------NTICWNPEA 241 (433)
T ss_pred ---------CceeEEecCCCcchheeeeccCCceEEEeccc-CCccceeeeeccc----------------cceecCccc
Confidence 46999999996654 4454 569999999997 7887766544332 279999988
Q ss_pred CEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCee
Q 010287 410 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLL 489 (513)
Q Consensus 410 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~ 489 (513)
-.+++|+.|..++.||++.....+....+|.+.|.++.|+|.|+-+++||.|..|+|+.....-..+ .....--+.|.
T Consensus 242 fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd--iYhtkRMq~V~ 319 (433)
T KOG0268|consen 242 FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD--IYHTKRMQHVF 319 (433)
T ss_pred cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchh--hhhHhhhheee
Confidence 8888999999999999998877778899999999999999999999999999999993222211000 00001135799
Q ss_pred EEEEeCCCCEEEEEc-CCcEEEEeC
Q 010287 490 HLAWHPSENSIACAA-SNSLYMYYA 513 (513)
Q Consensus 490 ~~~~sp~~~~la~~~-~~~~~i~~~ 513 (513)
++.||-|.+++++|| +.++.+|.|
T Consensus 320 ~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 320 CVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred EEEEeccccEEEecCCCcceeeeec
Confidence 999999999999999 678999975
No 98
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.2e-25 Score=213.11 Aligned_cols=241 Identities=13% Similarity=0.216 Sum_probs=171.7
Q ss_pred eccccCCeEEEEeccC-CCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287 228 AHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 305 (513)
Q Consensus 228 ~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 305 (513)
+.+|...|.+++|+|+ +.+|++| .|++|++||+.++.............+.+|...|.+++|+|++..++++++.|+.
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dgt 149 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF 149 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCe
Confidence 4789999999999996 7899998 7999999999864321110000012457899999999999998556789999999
Q ss_pred EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeeccccc
Q 010287 306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL 384 (513)
Q Consensus 306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~ 384 (513)
|++||++++... ..+. |...|.+++|+|+|.+|++++ ++.|+|||++. +..+..+.+|...
T Consensus 150 IrIWDl~tg~~~----~~i~-------------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs-g~~i~tl~gH~g~ 211 (568)
T PTZ00420 150 VNIWDIENEKRA----FQIN-------------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK-QEIASSFHIHDGG 211 (568)
T ss_pred EEEEECCCCcEE----EEEe-------------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCC-CcEEEEEecccCC
Confidence 999999987642 2221 225699999999999999876 59999999997 7888888888764
Q ss_pred ccccccccccCCccceeeEEEeCCCCEEEEEeCCC----cEEEEecCCCCccceeec--CCCCceeEEEEcCCCCceeee
Q 010287 385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN----LFRVFGCSEGSAESTTLE--ASKNPMRRQVQTPSRPSRPLG 458 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~ 458 (513)
+.... ++...|++++.+|++++.|+ .|+|||++.....+.... .+...+......+++.++++|
T Consensus 212 ~~s~~----------v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsG 281 (568)
T PTZ00420 212 KNTKN----------IWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIG 281 (568)
T ss_pred ceeEE----------EEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEE
Confidence 32110 22345678999999887664 799999996444443333 333444444556678899999
Q ss_pred cCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCC
Q 010287 459 SLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN 498 (513)
Q Consensus 459 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~ 498 (513)
+.|+.|++.+-.... ........+..++..++|.|+..
T Consensus 282 kGD~tIr~~e~~~~~--~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 282 KGDGNCRYYQHSLGS--IRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred ECCCeEEEEEccCCc--EEeecccccCCCccceEEccccc
Confidence 999999992221111 01111223567889999999864
No 99
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=7e-26 Score=186.01 Aligned_cols=271 Identities=13% Similarity=0.156 Sum_probs=199.5
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCc-eeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 191 (513)
+.|.+|+|+|.. ..+++++|.|++||+|+++.. .....
T Consensus 28 DsIS~l~FSP~~-~~~~~A~SWD~tVR~wevq~~g~~~~k---------------------------------------- 66 (347)
T KOG0647|consen 28 DSISALAFSPQA-DNLLAAGSWDGTVRIWEVQNSGQLVPK---------------------------------------- 66 (347)
T ss_pred cchheeEecccc-CceEEecccCCceEEEEEecCCcccch----------------------------------------
Confidence 889999998843 346778899999999999863 21110
Q ss_pred CCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeec
Q 010287 192 CASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 270 (513)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~ 270 (513)
....|.++|.+++|+.+|..+++| .|+.+++||+.+++..
T Consensus 67 -----------------------------------a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~---- 107 (347)
T KOG0647|consen 67 -----------------------------------AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS---- 107 (347)
T ss_pred -----------------------------------hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee----
Confidence 135778899999999999999998 6999999999987533
Q ss_pred ccCccccccccCCeEEEEEeCCCC-eEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287 271 DVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 349 (513)
Q Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 349 (513)
.+..|..+|.++.|-+... ..|++|+.|.+++.||+|.... +.+++.+ ..+.++..
T Consensus 108 -----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p----v~t~~LP-------------eRvYa~Dv- 164 (347)
T KOG0647|consen 108 -----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP----VATLQLP-------------ERVYAADV- 164 (347)
T ss_pred -----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe----eeeeecc-------------ceeeehhc-
Confidence 4577999999999987651 3899999999999999997665 4444444 24555544
Q ss_pred ecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287 350 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 428 (513)
Q Consensus 350 p~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 428 (513)
-..+++.+. +..|.+|+++.+....+.....-.. -+.+++..+|.+..+.|+-+|.+.+..+..
T Consensus 165 -~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~--------------Q~R~va~f~d~~~~alGsiEGrv~iq~id~ 229 (347)
T KOG0647|consen 165 -LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKW--------------QTRCVACFQDKDGFALGSIEGRVAIQYIDD 229 (347)
T ss_pred -cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccc--------------eeeEEEEEecCCceEeeeecceEEEEecCC
Confidence 245666655 4899999998533333333222111 023778888888889999999999998887
Q ss_pred CCcc-ceeecCCC---------CceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCC
Q 010287 429 GSAE-STTLEASK---------NPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN 498 (513)
Q Consensus 429 ~~~~-~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~ 498 (513)
+... -.+++-|+ .+|+.++|+|....|++++.||.+.+ |+............|..+|++++|+.+|.
T Consensus 230 ~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~F---WDkdar~kLk~s~~~~qpItcc~fn~~G~ 306 (347)
T KOG0647|consen 230 PNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSF---WDKDARTKLKTSETHPQPITCCSFNRNGS 306 (347)
T ss_pred CCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEE---ecchhhhhhhccCcCCCccceeEecCCCC
Confidence 5332 24555554 35788999999999999999999999 44432223333445789999999999999
Q ss_pred EEEEEc
Q 010287 499 SIACAA 504 (513)
Q Consensus 499 ~la~~~ 504 (513)
++|-+.
T Consensus 307 ifaYA~ 312 (347)
T KOG0647|consen 307 IFAYAL 312 (347)
T ss_pred EEEEEe
Confidence 999553
No 100
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.9e-26 Score=207.42 Aligned_cols=270 Identities=15% Similarity=0.236 Sum_probs=213.6
Q ss_pred EEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccccee
Q 010287 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (513)
Q Consensus 38 V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~ 117 (513)
.+-+.|+ ....||+|... .|++|+..++..+ ....-++ ..|++
T Consensus 180 ~nlldWs-s~n~laValg~-~vylW~~~s~~v~-----------------------~l~~~~~------------~~vtS 222 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVALGQ-SVYLWSASSGSVT-----------------------ELCSFGE------------ELVTS 222 (484)
T ss_pred hhHhhcc-cCCeEEEEecc-eEEEEecCCCceE-----------------------EeEecCC------------CceEE
Confidence 3456777 45578887643 7999998776631 1111113 77999
Q ss_pred EEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCC
Q 010287 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (513)
Q Consensus 118 i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 197 (513)
+.|+ .+|.+|++|..+|.|.|||..+.+....
T Consensus 223 v~ws--~~G~~LavG~~~g~v~iwD~~~~k~~~~---------------------------------------------- 254 (484)
T KOG0305|consen 223 VKWS--PDGSHLAVGTSDGTVQIWDVKEQKKTRT---------------------------------------------- 254 (484)
T ss_pred EEEC--CCCCEEEEeecCCeEEEEehhhcccccc----------------------------------------------
Confidence 9995 4888999999999999999987653321
Q ss_pred CcCCCCCCceeceeeccCCcccccceeeEeecc-ccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCcc
Q 010287 198 SFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHA-HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 275 (513)
Q Consensus 198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~ 275 (513)
+.+ |...|-+++|+ +..+.+| .++.|..+|++..+....
T Consensus 255 ------------------------------~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~------- 295 (484)
T KOG0305|consen 255 ------------------------------LRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS------- 295 (484)
T ss_pred ------------------------------ccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-------
Confidence 123 77889999999 5677778 699999999998776553
Q ss_pred ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-cCCE
Q 010287 276 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRH 354 (513)
Q Consensus 276 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~ 354 (513)
.+.+|...|..++|++|+ .++|+|+.|+.+.|||...... . ..+.+|.+.|..++|+| ...+
T Consensus 296 ~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p----~------------~~~~~H~aAVKA~awcP~q~~l 358 (484)
T KOG0305|consen 296 TLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEP----K------------FTFTEHTAAVKALAWCPWQSGL 358 (484)
T ss_pred hhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccc----c------------EEEeccceeeeEeeeCCCccCc
Confidence 368899999999999999 9999999999999999854333 1 22567789999999999 6678
Q ss_pred EEEEe---CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEE--eCCCcEEEEecCCC
Q 010287 355 ILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG--SYSNLFRVFGCSEG 429 (513)
Q Consensus 355 l~~~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~vwd~~~~ 429 (513)
||+|+ |+.|++||..+ +..+..+..... |..+.|++..+-|+++ ..++.|.||+..+.
T Consensus 359 LAsGGGs~D~~i~fwn~~~-g~~i~~vdtgsQ----------------VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~ 421 (484)
T KOG0305|consen 359 LATGGGSADRCIKFWNTNT-GARIDSVDTGSQ----------------VCSLIWSKKYKELLSTHGYSENQITLWKYPSM 421 (484)
T ss_pred eEEcCCCcccEEEEEEcCC-CcEecccccCCc----------------eeeEEEcCCCCEEEEecCCCCCcEEEEecccc
Confidence 88854 49999999996 777666543332 4589999998766643 36789999999985
Q ss_pred CccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 430 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 430 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.....+.+|...|..++++|+|..+++|+.|.++++
T Consensus 422 -~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrf 457 (484)
T KOG0305|consen 422 -KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRF 457 (484)
T ss_pred -ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEe
Confidence 566899999999999999999999999999999999
No 101
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=2.4e-26 Score=220.01 Aligned_cols=252 Identities=14% Similarity=0.183 Sum_probs=185.4
Q ss_pred eccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCC--c---------ceeeecccCccccccccCCeEEEEEeCCCCe
Q 010287 228 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS--N---------QSFNIVDVKPANMEDLTEVITSAEFHPTHCN 295 (513)
Q Consensus 228 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~--~---------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 295 (513)
...|.+.|.|+.|++||++||+| +|+.|.+|+.... . ...+-+. .-..+.+|...|.+++|+|++ .
T Consensus 65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk-~~~~l~~H~~DV~Dv~Wsp~~-~ 142 (942)
T KOG0973|consen 65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWK-VVSILRGHDSDVLDVNWSPDD-S 142 (942)
T ss_pred eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceee-EEEEEecCCCccceeccCCCc-c
Confidence 46899999999999999999999 7999999998730 0 0000000 013568899999999999998 9
Q ss_pred EEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCC
Q 010287 296 MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGP 374 (513)
Q Consensus 296 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~ 374 (513)
++++++.|++|.+||.++.+. ++. +.+|.+.|-.+.|.|-|+||++-+ |++|+||++.. -..
T Consensus 143 ~lvS~s~DnsViiwn~~tF~~----~~v------------l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-w~i 205 (942)
T KOG0973|consen 143 LLVSVSLDNSVIIWNAKTFEL----LKV------------LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-WGI 205 (942)
T ss_pred EEEEecccceEEEEcccccee----eee------------eecccccccceEECCccCeeeeecCCceEEEEEccc-cee
Confidence 999999999999999988744 444 455668899999999999999955 59999999764 445
Q ss_pred eeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe----CCCcEEEEecCCCCccceeecCCCCceeEEEEcC
Q 010287 375 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS----YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 450 (513)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 450 (513)
.+.+..+......-. -+..+.|||||++|++.. .-.++.|.+..+. +.-..+-+|..++..+.|+|
T Consensus 206 ~k~It~pf~~~~~~T---------~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tW-k~~~~LvGH~~p~evvrFnP 275 (942)
T KOG0973|consen 206 EKSITKPFEESPLTT---------FFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTW-KVDKDLVGHSAPVEVVRFNP 275 (942)
T ss_pred eEeeccchhhCCCcc---------eeeecccCCCcCeecchhhccCCcceeEEEecCCc-eeeeeeecCCCceEEEEeCh
Confidence 555554443211100 134899999999999764 2346888888766 33478889999999999976
Q ss_pred C------C-------C----ceeeecCCCeEEEecCCCCCcc-ccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEE
Q 010287 451 S------R-------P----SRPLGSLSGVVRRVKGADNSAL-DANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMY 511 (513)
Q Consensus 451 ~------~-------~----~l~~~~~d~~i~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~ 511 (513)
. . . .+|+|+.|+.+.+ |..... .+..-..-+...|.+++|+|||-.|..+| |+++.++
T Consensus 276 ~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSV---W~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 276 KLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSV---WNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred HHhccccccCCccCCCcceEEEEEecCCccEEE---EecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 2 1 1 5789999999999 322210 11111122478999999999998877666 6666665
No 102
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.8e-25 Score=184.36 Aligned_cols=267 Identities=13% Similarity=0.194 Sum_probs=199.1
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
+.|.++.|+| .+..|+++++||++++|++.....+.
T Consensus 14 d~IS~v~f~~--~~~~LLvssWDgslrlYdv~~~~l~~------------------------------------------ 49 (323)
T KOG1036|consen 14 DGISSVKFSP--SSSDLLVSSWDGSLRLYDVPANSLKL------------------------------------------ 49 (323)
T ss_pred hceeeEEEcC--cCCcEEEEeccCcEEEEeccchhhhh------------------------------------------
Confidence 7899999975 45588888999999999998764322
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeeccc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDV 272 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~ 272 (513)
...|..++.+++|.++.+.+..+-||.|+.+|++++...
T Consensus 50 -----------------------------------~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~------ 88 (323)
T KOG1036|consen 50 -----------------------------------KFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNED------ 88 (323)
T ss_pred -----------------------------------heecCCceeeeeccCCceEEEeccCceEEEEEecCCcce------
Confidence 135667899999998655444447999999999977654
Q ss_pred CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC
Q 010287 273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 352 (513)
Q Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~ 352 (513)
.+..|...|.|+.+.+.. ..+++|+.|++|++||.+.... .-.++.. ..|.++..+ +
T Consensus 89 ---~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~----~~~~d~~-------------kkVy~~~v~--g 145 (323)
T KOG1036|consen 89 ---QIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVV----VGTFDQG-------------KKVYCMDVS--G 145 (323)
T ss_pred ---eeccCCCceEEEEeeccC-CeEEEcccCccEEEEecccccc----ccccccC-------------ceEEEEecc--C
Confidence 457799999999999877 8999999999999999986332 2222221 368777765 5
Q ss_pred CEEEE-EeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC-
Q 010287 353 RHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS- 430 (513)
Q Consensus 353 ~~l~~-~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~- 430 (513)
..|++ +.+..+.+||+++...+.+.....-. +.+.++++-|++.-.++++-||.|.+=.+....
T Consensus 146 ~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lk--------------yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~ 211 (323)
T KOG1036|consen 146 NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLK--------------YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEE 211 (323)
T ss_pred CEEEEeecCceEEEEEcccccchhhhccccce--------------eEEEEEEEecCCCceEEEeecceEEEEccCCchH
Confidence 56666 55699999999974433322211111 113488999988888999999999876655431
Q ss_pred --ccceeecCCC---------CceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCE
Q 010287 431 --AESTTLEASK---------NPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENS 499 (513)
Q Consensus 431 --~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~ 499 (513)
.....++.|. .||++++|+|-.+.+|+|+.||.|.+ |++.......+.-.+...|.+++|+.||..
T Consensus 212 ~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~---Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~ 288 (323)
T KOG1036|consen 212 AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNI---WDLFNRKRLKQLAKYETSISSLSFSMDGSL 288 (323)
T ss_pred HhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEE---ccCcchhhhhhccCCCCceEEEEeccCCCe
Confidence 2224555554 48999999999999999999999999 666544444445556788999999999999
Q ss_pred EEEEc
Q 010287 500 IACAA 504 (513)
Q Consensus 500 la~~~ 504 (513)
||+|+
T Consensus 289 LAia~ 293 (323)
T KOG1036|consen 289 LAIAS 293 (323)
T ss_pred EEEEe
Confidence 99887
No 103
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=5.9e-27 Score=187.11 Aligned_cols=236 Identities=13% Similarity=0.193 Sum_probs=187.4
Q ss_pred eccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287 228 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 306 (513)
Q Consensus 228 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 306 (513)
+.+|.+.|++.+.+.+...-+++ .|-+.++||.-++..+.. -.|..-|..++|+.|. +.|++|+.+..+
T Consensus 55 feghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhs---------f~hkhivk~~af~~ds-~~lltgg~ekll 124 (334)
T KOG0278|consen 55 FEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHS---------FEHKHIVKAVAFSQDS-NYLLTGGQEKLL 124 (334)
T ss_pred eeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhh---------hhhhheeeeEEecccc-hhhhccchHHHh
Confidence 36899999999999888777887 699999999998886643 3488889999999998 999999999999
Q ss_pred EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccc
Q 010287 307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR 385 (513)
Q Consensus 307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~ 385 (513)
|+||+...+... + -+.+|.+.|..+.|....+.|+++.+ ++|++||.++ +..++++.....
T Consensus 125 rvfdln~p~App---~------------E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT-gt~v~sL~~~s~-- 186 (334)
T KOG0278|consen 125 RVFDLNRPKAPP---K------------EISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT-GTEVQSLEFNSP-- 186 (334)
T ss_pred hhhhccCCCCCc---h------------hhcCCCCcceeEEEeccCceEEeeccCCceEEEEecc-CcEEEEEecCCC--
Confidence 999987654321 1 15678899999999998788887655 9999999998 888888876554
Q ss_pred cccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEE
Q 010287 386 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVR 465 (513)
Q Consensus 386 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 465 (513)
|+++.++++|++|.++ ..+.|.+||..+...+ ...+. ...|.+...+|+...++.|++|..++
T Consensus 187 --------------VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~l-Ks~k~-P~nV~SASL~P~k~~fVaGged~~~~ 249 (334)
T KOG0278|consen 187 --------------VTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLL-KSYKM-PCNVESASLHPKKEFFVAGGEDFKVY 249 (334)
T ss_pred --------------CcceeeccCCCEEEEe-cCceeEEeccccccce-eeccC-ccccccccccCCCceEEecCcceEEE
Confidence 3589999999987654 4578999999876332 22222 23467888899999999999999998
Q ss_pred E--ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 466 R--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 466 ~--~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
. +...+. +...+.+|-++|.++.|+|||..-|+|| |++++||+
T Consensus 250 kfDy~TgeE----i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 250 KFDYNTGEE----IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred EEeccCCce----eeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 8 222211 1112467899999999999999999999 77888886
No 104
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=1.7e-25 Score=183.16 Aligned_cols=315 Identities=16% Similarity=0.249 Sum_probs=220.4
Q ss_pred cccccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 31 EVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
...|.+.|+++...+. |+|+++|+.||.|.+||++....-... .+ ...+....-...-.+|.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s--~l------i~k~~c~v~~~h~~~Hk--------- 101 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS--GL------IAKHKCIVAKQHENGHK--------- 101 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc--cc------eeheeeeccccCCccce---------
Confidence 4469999999999996 899999999999999998765421000 00 00000000111234555
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
-.|..+.|.|... .+|.+++-|.+++|||..+.+....+++.
T Consensus 102 ---y~iss~~WyP~Dt-GmFtssSFDhtlKVWDtnTlQ~a~~F~me---------------------------------- 143 (397)
T KOG4283|consen 102 ---YAISSAIWYPIDT-GMFTSSSFDHTLKVWDTNTLQEAVDFKME---------------------------------- 143 (397)
T ss_pred ---eeeeeeEEeeecC-ceeecccccceEEEeecccceeeEEeecC----------------------------------
Confidence 7899999999655 48899999999999999987654433322
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC---CCEEEEE-cCCeEEEEEcCCCcc
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---GETFISA-DDLRINLWNLEISNQ 265 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~-~d~~i~vwd~~~~~~ 265 (513)
+.|.+-+++|- ..++++| .+-.|++.|+..+..
T Consensus 144 -------------------------------------------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~ 180 (397)
T KOG4283|consen 144 -------------------------------------------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF 180 (397)
T ss_pred -------------------------------------------ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc
Confidence 23556666662 3456667 799999999997764
Q ss_pred eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcc--ccccccccE
Q 010287 266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS--FFTEIIASI 343 (513)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v 343 (513)
.. .+.+|.+.|.++.|+|.....|++|+.||.|++||+|.-.-+ .+.++.++...+.. .-..|.+.+
T Consensus 181 sH--------~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc---f~~lD~hn~k~~p~~~~n~ah~gkv 249 (397)
T KOG4283|consen 181 SH--------TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC---FRVLDQHNTKRPPILKTNTAHYGKV 249 (397)
T ss_pred ee--------eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccce---eEEeecccCccCcccccccccccee
Confidence 43 679999999999999998788999999999999999875322 55666655332222 235688999
Q ss_pred EEEEEeecCCEEEEE-eCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEE
Q 010287 344 SDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 422 (513)
Q Consensus 344 ~~i~~sp~~~~l~~~-~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 422 (513)
..++|+.++.+++++ .+..+++|+..++...+..+..-. +++......-+. +.+...++---.++.+.
T Consensus 250 ngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~----------~n~~~~~~~~~~-~~~s~vfv~~p~~~~la 318 (397)
T KOG4283|consen 250 NGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPII----------HNQTTSFAVHIQ-SMDSDVFVLFPNDGSLA 318 (397)
T ss_pred eeeeecccchhhhhccCccceEEeecccCccccccccccc----------ccccccceEEEe-ecccceEEEEecCCeEE
Confidence 999999999999985 569999999986333332221100 000000001122 33444444445568899
Q ss_pred EEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 423 VFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 423 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
++++-.+. .+..+..|...+.+.++.|+-+.+.+|+.|+.|..
T Consensus 319 ll~~~sgs-~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~ 361 (397)
T KOG4283|consen 319 LLNLLEGS-FVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYM 361 (397)
T ss_pred EEEccCce-EEEeeecccceeeEEeecCchhhhhccccCCcccc
Confidence 99988874 44677888888999999999999999999999887
No 105
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.8e-25 Score=183.21 Aligned_cols=276 Identities=12% Similarity=0.140 Sum_probs=208.3
Q ss_pred cccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccc
Q 010287 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (513)
Q Consensus 35 ~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (513)
.+.|+++.|+|.+..|+++++||++++|++...... ..+.++.+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~------------------------------------~~~~~~~p 56 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK------------------------------------LKFKHGAP 56 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh------------------------------------hheecCCc
Confidence 589999999999999999999999999998655321 11122278
Q ss_pred ceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCC
Q 010287 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (513)
Q Consensus 115 i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (513)
+.+.+|.+ ...+++|+.||.|+++|+.++....
T Consensus 57 lL~c~F~d---~~~~~~G~~dg~vr~~Dln~~~~~~-------------------------------------------- 89 (323)
T KOG1036|consen 57 LLDCAFAD---ESTIVTGGLDGQVRRYDLNTGNEDQ-------------------------------------------- 89 (323)
T ss_pred eeeeeccC---CceEEEeccCceEEEEEecCCccee--------------------------------------------
Confidence 99999953 4689999999999999999875322
Q ss_pred CCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccC
Q 010287 195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 273 (513)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~ 273 (513)
+..|...|.|+.+++....+++| -|++|++||.+......
T Consensus 90 ---------------------------------igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~------ 130 (323)
T KOG1036|consen 90 ---------------------------------IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG------ 130 (323)
T ss_pred ---------------------------------eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccc------
Confidence 35788889999999977788887 69999999998532221
Q ss_pred ccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC
Q 010287 274 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 353 (513)
Q Consensus 274 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~ 353 (513)
.+. ....|.++.... +.|+.|+.|..|.+||+|+.....+ .. -...+-.++|+++-|++.
T Consensus 131 --~~d-~~kkVy~~~v~g---~~LvVg~~~r~v~iyDLRn~~~~~q------~r--------eS~lkyqtR~v~~~pn~e 190 (323)
T KOG1036|consen 131 --TFD-QGKKVYCMDVSG---NRLVVGTSDRKVLIYDLRNLDEPFQ------RR--------ESSLKYQTRCVALVPNGE 190 (323)
T ss_pred --ccc-cCceEEEEeccC---CEEEEeecCceEEEEEcccccchhh------hc--------cccceeEEEEEEEecCCC
Confidence 112 234788887654 5788899999999999998654211 00 012235789999999877
Q ss_pred EEEEEe-CCeEEEEEccCC---CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 354 HILSRD-YMTLKLWDINMD---SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 354 ~l~~~~-~~~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
-.++++ +|.|.+=.++.. ...-..++.|..... ..+.+++|.+++|+|-...|+||+.||.|.+||+.+.
T Consensus 191 Gy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~------~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 191 GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEK------DTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred ceEEEeecceEEEEccCCchHHhhhceeEEeeecccC------CceEEEEeceeEeccccceEEecCCCceEEEccCcch
Confidence 666665 698887666541 133456677765432 2244567889999999999999999999999999987
Q ss_pred CccceeecCCCCceeEEEEcCCCCceeeec
Q 010287 430 SAESTTLEASKNPMRRQVQTPSRPSRPLGS 459 (513)
Q Consensus 430 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 459 (513)
+.+..+......|..++|+.+|..||.++
T Consensus 265 -Krl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 265 -KRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred -hhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 44466666677899999999999999885
No 106
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=5.2e-26 Score=214.88 Aligned_cols=268 Identities=15% Similarity=0.245 Sum_probs=217.3
Q ss_pred ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (513)
Q Consensus 34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (513)
|...+.|..|+ ..++++|+.+++|.+|+..++.. ....+.||. +
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~----------------------i~~~l~GH~------------g 250 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL----------------------ILTRLVGHF------------G 250 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceE----------------------EEeeccCCC------------C
Confidence 57789999998 56899999999999999876654 344589999 8
Q ss_pred cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (513)
Q Consensus 114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (513)
.|.++++. ..+.++++|+.|+++++||..++.+...
T Consensus 251 ~V~~l~~~--~~~~~lvsgS~D~t~rvWd~~sg~C~~~------------------------------------------ 286 (537)
T KOG0274|consen 251 GVWGLAFP--SGGDKLVSGSTDKTERVWDCSTGECTHS------------------------------------------ 286 (537)
T ss_pred CceeEEEe--cCCCEEEEEecCCcEEeEecCCCcEEEE------------------------------------------
Confidence 99999994 2467999999999999999999987765
Q ss_pred CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc
Q 010287 194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 272 (513)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~ 272 (513)
+.+|...|.++...+ ..+++| .|.+|++|++.++..+ .
T Consensus 287 ----------------------------------l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l-~---- 325 (537)
T KOG0274|consen 287 ----------------------------------LQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACL-N---- 325 (537)
T ss_pred ----------------------------------ecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceE-E----
Confidence 347777788776543 466666 6999999999966543 2
Q ss_pred CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC
Q 010287 273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 352 (513)
Q Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~ 352 (513)
.+.+|..+|+++..+ + .++++|+.|++|++||+++++. ++. +.+|...|.++.+.+.
T Consensus 326 ---l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~c----l~s------------l~gH~~~V~sl~~~~~- 382 (537)
T KOG0274|consen 326 ---LLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKC----LKS------------LSGHTGRVYSLIVDSE- 382 (537)
T ss_pred ---EeccccccEEEEEec--C-CEEEEEecCceEEEEEhhhcee----eee------------ecCCcceEEEEEecCc-
Confidence 345699999999998 4 6899999999999999997776 333 4567789999988765
Q ss_pred CEEEEEe-CCeEEEEEccCCC-CCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287 353 RHILSRD-YMTLKLWDINMDS-GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 430 (513)
Q Consensus 353 ~~l~~~~-~~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 430 (513)
..+++|+ |+.|++||+++ . +++.++.+|...+ -.+...+++|++++.|+.|++||..+++
T Consensus 383 ~~~~Sgs~D~~IkvWdl~~-~~~c~~tl~~h~~~v-----------------~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 383 NRLLSGSLDTTIKVWDLRT-KRKCIHTLQGHTSLV-----------------SSLLLRDNFLVSSSADGTIKLWDAEEGE 444 (537)
T ss_pred ceEEeeeeccceEeecCCc-hhhhhhhhcCCcccc-----------------cccccccceeEeccccccEEEeecccCc
Confidence 7888887 59999999997 6 8899999888763 2344467899999999999999999884
Q ss_pred ccceeecC-CCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 431 AESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 431 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.+.++++ |...+..+.+. ...+++++.||.+++
T Consensus 445 -~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l 478 (537)
T KOG0274|consen 445 -CLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKL 478 (537)
T ss_pred -eeeeeccCCcccEEEeecC--cceEEEEecCCeeEE
Confidence 4467777 66777777776 567888899999999
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=193.74 Aligned_cols=279 Identities=18% Similarity=0.198 Sum_probs=221.6
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
..|.++..+|+ ...+++|+.|+.+.++|...++...+
T Consensus 220 pgi~ald~~~s--~~~ilTGG~d~~av~~d~~s~q~l~~----------------------------------------- 256 (506)
T KOG0289|consen 220 PGITALDIIPS--SSKILTGGEDKTAVLFDKPSNQILAT----------------------------------------- 256 (506)
T ss_pred CCeeEEeecCC--CCcceecCCCCceEEEecchhhhhhh-----------------------------------------
Confidence 55777777664 35799999999999999887764432
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
+.||...|..+.++++...++++ .|..|++|..-.....
T Consensus 257 -----------------------------------~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~----- 296 (506)
T KOG0289|consen 257 -----------------------------------LKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP----- 296 (506)
T ss_pred -----------------------------------ccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc-----
Confidence 46888889999999999999998 7999999988654422
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 351 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 351 (513)
.....|..+|+.+..+|.+ .+|++++.|+++.+.|++++..... ..... ..-.+++.+|+||
T Consensus 297 ---~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~----vs~~~----------s~v~~ts~~fHpD 358 (506)
T KOG0289|consen 297 ---TSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTV----VSDET----------SDVEYTSAAFHPD 358 (506)
T ss_pred ---cccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEE----Eeecc----------ccceeEEeeEcCC
Confidence 2557899999999999999 9999999999999999999876321 11100 0135899999999
Q ss_pred CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287 352 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 430 (513)
Q Consensus 352 ~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 430 (513)
|-++.+|.. +.|+|||+.. +..+..|.+|... |..++|+.+|-||+++.+|+.|++||++..+
T Consensus 359 gLifgtgt~d~~vkiwdlks-~~~~a~Fpght~~---------------vk~i~FsENGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 359 GLIFGTGTPDGVVKIWDLKS-QTNVAKFPGHTGP---------------VKAISFSENGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred ceEEeccCCCceEEEEEcCC-ccccccCCCCCCc---------------eeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence 999999885 9999999997 7788999999987 4599999999999999999999999999663
Q ss_pred ccceeec-CCCCceeEEEEcCCCCceeeecCCCeEEEec-CCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcE
Q 010287 431 AESTTLE-ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK-GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSL 508 (513)
Q Consensus 431 ~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~ 508 (513)
...++. ....++.++.|.+.|.+|+.++.|-.|.+.+ ..+.| ........|++..+.+.|....+++++++.+.+
T Consensus 423 -n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W--~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~ 499 (506)
T KOG0289|consen 423 -NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW--TEIKELADHSGLSTGVRFGEHAQYLASTSMDAI 499 (506)
T ss_pred -ccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccc--eeeehhhhcccccceeeecccceEEeeccchhh
Confidence 333333 3345799999999999999999998888832 22222 122244467889999999999999999996655
Q ss_pred EEE
Q 010287 509 YMY 511 (513)
Q Consensus 509 ~i~ 511 (513)
+-+
T Consensus 500 l~~ 502 (506)
T KOG0289|consen 500 LRL 502 (506)
T ss_pred eEE
Confidence 443
No 108
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=3.6e-26 Score=198.20 Aligned_cols=270 Identities=15% Similarity=0.251 Sum_probs=194.1
Q ss_pred cccccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 31 EVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
...|.+.|+.+.+-|. ..+||+++..+.|.|||........... .+.+....+.||+
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~-------------~~~~Pdl~L~gH~--------- 177 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS-------------GECRPDLRLKGHE--------- 177 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc-------------ccCCCceEEEeec---------
Confidence 4679999999999997 5688899999999999987554321000 0223334567887
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
+.-++++|++... ..|++++.|++|++||+........
T Consensus 178 ---~eg~glsWn~~~~-g~Lls~~~d~~i~lwdi~~~~~~~~-------------------------------------- 215 (422)
T KOG0264|consen 178 ---KEGYGLSWNRQQE-GTLLSGSDDHTICLWDINAESKEDK-------------------------------------- 215 (422)
T ss_pred ---ccccccccccccc-eeEeeccCCCcEEEEeccccccCCc--------------------------------------
Confidence 5477899987555 4899999999999999986532100
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC-CEEEEE-cCCeEEEEEcCCCccee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSF 267 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~vwd~~~~~~~~ 267 (513)
....+....+|...|..++|++-. ..|+++ +|+.+.|||.++.....
T Consensus 216 -------------------------------~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~ 264 (422)
T KOG0264|consen 216 -------------------------------VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP 264 (422)
T ss_pred -------------------------------cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC
Confidence 001122358999999999999954 455555 79999999999631111
Q ss_pred eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287 268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 347 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 347 (513)
......|...|.|++|+|-+..+||+|+.|++|.+||+|+... .+.. +.+|...|.+|.
T Consensus 265 ------~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~---~lh~------------~e~H~dev~~V~ 323 (422)
T KOG0264|consen 265 ------SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK---PLHT------------FEGHEDEVFQVE 323 (422)
T ss_pred ------cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc---Ccee------------ccCCCcceEEEE
Confidence 1256789999999999998889999999999999999998553 2344 455668899999
Q ss_pred EeecCC-EEEE-EeCCeEEEEEccCCCCC----------eeeeecccccccccccccccCCccceeeEEEeCCCCE-EEE
Q 010287 348 FARNGR-HILS-RDYMTLKLWDINMDSGP----------VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VAT 414 (513)
Q Consensus 348 ~sp~~~-~l~~-~~~~~v~iwd~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~ 414 (513)
|||... .|++ |.|+.+.|||+..-++. ...+..|.+... .|..+.|+|+..+ |++
T Consensus 324 WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~------------kV~DfsWnp~ePW~I~S 391 (422)
T KOG0264|consen 324 WSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA------------KVSDFSWNPNEPWTIAS 391 (422)
T ss_pred eCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc------------ccccccCCCCCCeEEEE
Confidence 999665 5555 44699999999752222 222233333222 2448899998876 557
Q ss_pred EeCCCcEEEEecCC
Q 010287 415 GSYSNLFRVFGCSE 428 (513)
Q Consensus 415 ~~~dg~i~vwd~~~ 428 (513)
.+.|+.+.||.+..
T Consensus 392 vaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 392 VAEDNILQIWQMAE 405 (422)
T ss_pred ecCCceEEEeeccc
Confidence 88999999999873
No 109
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.1e-26 Score=187.62 Aligned_cols=321 Identities=17% Similarity=0.243 Sum_probs=229.8
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
++.+|.+.|..++-......+.+++.|.+.+||.++++.. ...+.||.
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C-----------------------L~~Y~GH~--------- 190 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC-----------------------LATYTGHT--------- 190 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeeccccc-----------------------eeeecccc---------
Confidence 6779999999999888888999999999999999998874 36789999
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
+.|++|+|++ .+.++++++.|++-.||...-.-..... ..+........ ...+ |.
T Consensus 191 ---GSVNsikfh~--s~~L~lTaSGD~taHIW~~av~~~vP~~---~a~~~hSsEeE----------~e~s-De------ 245 (481)
T KOG0300|consen 191 ---GSVNSIKFHN--SGLLLLTASGDETAHIWKAAVNWEVPSN---NAPSDHSSEEE----------EEHS-DE------ 245 (481)
T ss_pred ---cceeeEEecc--ccceEEEccCCcchHHHHHhhcCcCCCC---CCCCCCCchhh----------hhcc-cc------
Confidence 8899999976 4558999999999999984322110000 00000000000 0000 00
Q ss_pred cCCCCCCCCcCC-CCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287 190 FGCASNDSSFPP-GGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 267 (513)
Q Consensus 190 ~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~ 267 (513)
...+..-+. .....|+++ ...+.+|...|.+..|...|+.++++ -|.+..+||.+++....
T Consensus 246 ---~~~d~d~~~~sD~~tiRvP--------------l~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~ 308 (481)
T KOG0300|consen 246 ---HNRDTDSSEKSDGHTIRVP--------------LMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVN 308 (481)
T ss_pred ---cccccccccccCCceeeee--------------eeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceec
Confidence 000000000 011133331 12257899999999999999999999 59999999999877542
Q ss_pred eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287 268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 347 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 347 (513)
.+.+|....+.++-+|.. +++++++.|.+.++||++..-. .+ ..|.+|...|+++.
T Consensus 309 --------~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~---sV------------~VFQGHtdtVTS~v 364 (481)
T KOG0300|consen 309 --------ILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQ---SV------------AVFQGHTDTVTSVV 364 (481)
T ss_pred --------cccCcchhccccccCCcc-eEEEEeccCceeEeccchhhcc---ee------------eeecccccceeEEE
Confidence 578999999999999998 9999999999999999983211 12 23667778999999
Q ss_pred EeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEec
Q 010287 348 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 426 (513)
Q Consensus 348 ~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 426 (513)
|.-+.+ +++|+| .+|++||+++...++.++...... ..++.+..++.++.--++..|++||+
T Consensus 365 F~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~----------------NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 365 FNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPA----------------NRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred EecCCc-eeecCCCceEEEeeeccccCcceeeecCCcc----------------ceeEeecCCceEEeccCCceEEEEec
Confidence 997655 566665 999999999866778888765542 37888888889999999999999999
Q ss_pred CCCCcc---ceeecCCCCceeEEEEcCCCC--ceeeecCCCeEE
Q 010287 427 SEGSAE---STTLEASKNPMRRQVQTPSRP--SRPLGSLSGVVR 465 (513)
Q Consensus 427 ~~~~~~---~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~ 465 (513)
...... ...-.+|..-|.+++|..+.. -|.+++.|+.+.
T Consensus 428 nG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~ 471 (481)
T KOG0300|consen 428 NGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVA 471 (481)
T ss_pred CCCccccCCcccccccceeeeeeeccccCcccccccccccceee
Confidence 843111 123458888999999965433 466777777654
No 110
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.2e-26 Score=182.34 Aligned_cols=250 Identities=17% Similarity=0.199 Sum_probs=189.9
Q ss_pred eccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe-CCCCeEEEEEeCCCc
Q 010287 228 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSSKGS 305 (513)
Q Consensus 228 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~dg~ 305 (513)
...|.+.|..+...--|+.|+++ +|++|+|+..+...+...+ ..+.+|.++|..++|. |.-+.+||+++.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll-----~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk 81 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLL-----AELTGHSGPVWKVAWAHPKFGTILASCSYDGK 81 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceee-----eEecCCCCCeeEEeecccccCcEeeEeecCce
Confidence 46888989988888889999999 8999999999877652222 3789999999999995 433399999999999
Q ss_pred EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec--CCEEEEEe-CCeEEEEEccCCCCC--eeeeec
Q 010287 306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--GRHILSRD-YMTLKLWDINMDSGP--VATFQV 380 (513)
Q Consensus 306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~--~~~l~~~~-~~~v~iwd~~~~~~~--~~~~~~ 380 (513)
|.||.-.+++-.. ... +..|.+.|++++|.|. |-.|++++ ||.|.|.+.+..+.- .+....
T Consensus 82 VIiWke~~g~w~k--~~e------------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a 147 (299)
T KOG1332|consen 82 VIIWKEENGRWTK--AYE------------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA 147 (299)
T ss_pred EEEEecCCCchhh--hhh------------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc
Confidence 9999987764311 111 4567799999999995 45666655 699999999864221 233345
Q ss_pred ccccccccccccccCCccceeeEEEeCC---C-----------CEEEEEeCCCcEEEEecCCCCccc-eeecCCCCceeE
Q 010287 381 HEHLRPKLCDLYENDSIFDKFECCLSGD---G-----------GRVATGSYSNLFRVFGCSEGSAES-TTLEASKNPMRR 445 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~-----------~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~v~~ 445 (513)
|... |++++|.|. | +.|++|+.|+.|+||+..++.-+. .++++|.+.|+.
T Consensus 148 H~~G---------------vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRD 212 (299)
T KOG1332|consen 148 HEIG---------------VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRD 212 (299)
T ss_pred cccc---------------cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhh
Confidence 5544 458888886 4 469999999999999998864343 569999999999
Q ss_pred EEEcCCC----CceeeecCCCeEEE-ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEE-cCCcEEEEe
Q 010287 446 QVQTPSR----PSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA-ASNSLYMYY 512 (513)
Q Consensus 446 ~~~~~~~----~~l~~~~~d~~i~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~-~~~~~~i~~ 512 (513)
+++.|.- .+||+++.||.+.| .+..+ .+........++...+..++||+.|+.||++ ++|.+.+|.
T Consensus 213 VAwaP~~gl~~s~iAS~SqDg~viIwt~~~e-~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 213 VAWAPSVGLPKSTIASCSQDGTVIIWTKDEE-YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred hhhccccCCCceeeEEecCCCcEEEEEecCc-cCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 9999874 47999999999999 22221 1111122233478899999999999999955 588888884
No 111
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.4e-25 Score=200.62 Aligned_cols=330 Identities=16% Similarity=0.220 Sum_probs=233.0
Q ss_pred cceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCC
Q 010287 20 SQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH 99 (513)
Q Consensus 20 ~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 99 (513)
.+.|...+...+.+|++.|.||+.+|.|.+||+|+.||+|+||.+.++..+
T Consensus 385 LrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcv----------------------------- 435 (733)
T KOG0650|consen 385 LRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCV----------------------------- 435 (733)
T ss_pred cCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEE-----------------------------
Confidence 356777777889999999999999999999999999999999999988752
Q ss_pred CCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCcee
Q 010287 100 EPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY 179 (513)
Q Consensus 100 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (513)
+.....+.|.+|+|+|..+-..|+++-.+. +.|-+..-|...... .. ...++..
T Consensus 436 -------r~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~--~t--~ell~~~-------------- 489 (733)
T KOG0650|consen 436 -------RTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVG--PT--KELLASA-------------- 489 (733)
T ss_pred -------EEEeecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhc--ch--hhhhhcC--------------
Confidence 222222669999999977765666654444 666655444211100 00 0000000
Q ss_pred ccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE----cCCeE
Q 010287 180 MANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA----DDLRI 255 (513)
Q Consensus 180 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----~d~~i 255 (513)
| -....+..+..|.-...+......+. .-.|...|..+.|+..|.+|++. ....|
T Consensus 490 -~-----------------~~~~p~~~~~~W~~~~~~e~~~~v~~---~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 490 -P-----------------NESEPDAAVVTWSRASLDELEKGVCI---VIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred -C-----------------CccCCcccceeechhhhhhhccceEE---EEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 0 00112234445544333322222222 24678889999999999999985 25778
Q ss_pred EEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccc
Q 010287 256 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF 335 (513)
Q Consensus 256 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (513)
.|+++.....+. .+....+.|.++.|+|..+ +|+.+ ....|++||+....+..+ +..
T Consensus 549 liHQLSK~~sQ~--------PF~kskG~vq~v~FHPs~p-~lfVa-Tq~~vRiYdL~kqelvKk----L~t--------- 605 (733)
T KOG0650|consen 549 LIHQLSKRKSQS--------PFRKSKGLVQRVKFHPSKP-YLFVA-TQRSVRIYDLSKQELVKK----LLT--------- 605 (733)
T ss_pred EEEecccccccC--------chhhcCCceeEEEecCCCc-eEEEE-eccceEEEehhHHHHHHH----Hhc---------
Confidence 899987544321 4445567899999999984 44433 568899999987665322 211
Q ss_pred cccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEE
Q 010287 336 FTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 414 (513)
Q Consensus 336 ~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 414 (513)
....|.+++.+|.|..|+.|+. +.+..||+....++.+++..|... +++++|++.-.++++
T Consensus 606 ---g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~a---------------vr~Va~H~ryPLfas 667 (733)
T KOG0650|consen 606 ---GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA---------------VRSVAFHKRYPLFAS 667 (733)
T ss_pred ---CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhh---------------hhhhhhccccceeee
Confidence 1247999999999999988875 999999999878899999999876 448999999999999
Q ss_pred EeCCCcEEEEecCC------CCcc--ceeecCCCCc----eeEEEEcCCCCceeeecCCCeEEE
Q 010287 415 GSYSNLFRVFGCSE------GSAE--STTLEASKNP----MRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 415 ~~~dg~i~vwd~~~------~~~~--~~~~~~~~~~----v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
|+.||++.||.-.- ...+ +..+.+|... |....|+|...+|.+++.||.|++
T Consensus 668 ~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirl 731 (733)
T KOG0650|consen 668 GSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRL 731 (733)
T ss_pred ecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEe
Confidence 99999999884322 1111 2566677655 788889999999999999999998
No 112
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.95 E-value=2.6e-25 Score=184.32 Aligned_cols=341 Identities=16% Similarity=0.275 Sum_probs=235.3
Q ss_pred CCCCCCcccccccccccccceeccccccccc------cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccC
Q 010287 2 DNGGGSSEAAAQPLEWKFSQVFGERTAGEEV------QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRR 75 (513)
Q Consensus 2 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~------~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~ 75 (513)
++|+-+.+.......|++.-+.+........ .-..-...+.|||||.-|++-+.|..+.+|++.........
T Consensus 10 e~~gek~~ede~~~s~n~~y~qg~~~l~g~~~~~stt~p~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~-- 87 (406)
T KOG2919|consen 10 EDGGEKDDEDEKKKSWNFGYVQGPINLGGNVIAFSTTKPLNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA-- 87 (406)
T ss_pred ccCCccCcccchhccCccceeecceeccCceEEeccCCchhhhccceeCCCCceEEeecccCeeeEEecChhhcccCC--
Confidence 3454455555677888864332322111100 01123456789999999999999999999997432210000
Q ss_pred ccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEee-----cCCCceEEEeecCCeEEEEEccCceeee
Q 010287 76 DLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ-----SANSALYLLSTNDKTIKLWKVQEKKVKK 150 (513)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~-----~~~~~~l~s~s~d~~i~vw~~~~~~~~~ 150 (513)
......+.++.+++. . ...|..-+|-+ .++..++++++.|.-|++||.-+|+...
T Consensus 88 ---~~~~~~~~~~~~r~~---e--------------g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lra 147 (406)
T KOG2919|consen 88 ---DGPLNFSKHLSYRYQ---E--------------GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRA 147 (406)
T ss_pred ---CCccccccceeEEec---c--------------CCEEEEEEeeeccccCCCccceeeeccccCceeeeecccccccc
Confidence 000001111122211 1 15588888864 3456688999999999999999998654
Q ss_pred eeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeecc
Q 010287 151 VFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHA 230 (513)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 230 (513)
.... ..
T Consensus 148 Sy~~--------------------------------------------------------------------------yd 153 (406)
T KOG2919|consen 148 SYRA--------------------------------------------------------------------------YD 153 (406)
T ss_pred chhh--------------------------------------------------------------------------hh
Confidence 3221 01
Q ss_pred cc---CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEE
Q 010287 231 HD---YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 307 (513)
Q Consensus 231 h~---~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 307 (513)
|. ....+++|+|||.+|++|....|+++|+....+...........-.+..+-|.+++|+|.....++.++....+-
T Consensus 154 h~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~g 233 (406)
T KOG2919|consen 154 HQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVG 233 (406)
T ss_pred hHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceee
Confidence 11 224689999999999999999999999954444333221111112334677899999999877999999999998
Q ss_pred EEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecccccc
Q 010287 308 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLR 385 (513)
Q Consensus 308 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~ 385 (513)
||.-..+.. +.. +-+|.+.|+.++|.++|..|++|.. ..|..||++....++..+..|....
T Consensus 234 iy~~~~~~p----l~l------------lggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~T 297 (406)
T KOG2919|consen 234 IYNDDGRRP----LQL------------LGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDT 297 (406)
T ss_pred eEecCCCCc----eee------------ecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCc
Confidence 887655544 222 4467789999999999999999874 8999999998778888887776522
Q ss_pred cccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEE
Q 010287 386 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVR 465 (513)
Q Consensus 386 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 465 (513)
+ +.| -....|++++|++|+.||.|++||++........+..+...++.++++|--..+|+++-.+...
T Consensus 298 N--------QRI----~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~f~ 365 (406)
T KOG2919|consen 298 N--------QRI----LFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIFK 365 (406)
T ss_pred c--------ceE----EEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCceeec
Confidence 1 111 3566799999999999999999999985566678888999999999999999999987666555
Q ss_pred E
Q 010287 466 R 466 (513)
Q Consensus 466 ~ 466 (513)
.
T Consensus 366 ~ 366 (406)
T KOG2919|consen 366 Y 366 (406)
T ss_pred C
Confidence 5
No 113
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.2e-26 Score=181.16 Aligned_cols=262 Identities=16% Similarity=0.223 Sum_probs=199.0
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
.+.+|.+.|..+..+--|++|||++.|++|+|+.+..... .....+|.||.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--------------------s~ll~~L~Gh~--------- 56 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--------------------SKLLAELTGHS--------- 56 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC--------------------ceeeeEecCCC---------
Confidence 4668999999999998999999999999999999876542 13557899999
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
++|..++|....-|.+|++++.||.|.||.-++++..+..+
T Consensus 57 ---GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e------------------------------------ 97 (299)
T KOG1332|consen 57 ---GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYE------------------------------------ 97 (299)
T ss_pred ---CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhh------------------------------------
Confidence 99999999644468899999999999999998875333211
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC--CCEEEEE-cCCeEEEEEcCCCcce
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 266 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~vwd~~~~~~~ 266 (513)
...|...|++++|.|. |-.|+++ +||.|.+.+.+....-
T Consensus 98 --------------------------------------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w 139 (299)
T KOG1332|consen 98 --------------------------------------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW 139 (299)
T ss_pred --------------------------------------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc
Confidence 2478888999999985 6677777 7999999999865221
Q ss_pred eeecccCccccccccCCeEEEEEeCC---C----------CeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCc
Q 010287 267 FNIVDVKPANMEDLTEVITSAEFHPT---H----------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 333 (513)
Q Consensus 267 ~~~~~~~~~~~~~~~~~i~~~~~~~~---~----------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 333 (513)
.. +.....|.-.|++++|.|. | .+.|++|+.|..|+||+..++.-.. -
T Consensus 140 ~t-----~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~--e------------ 200 (299)
T KOG1332|consen 140 TT-----SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL--E------------ 200 (299)
T ss_pred cc-----hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhh--h------------
Confidence 11 1234678999999999885 2 1469999999999999988763211 1
Q ss_pred cccccccccEEEEEEeecC----CEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC
Q 010287 334 SFFTEIIASISDIKFARNG----RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 408 (513)
Q Consensus 334 ~~~~~~~~~v~~i~~sp~~----~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 408 (513)
..+.+|.+.|+.++|.|.- .+|++++. |+|.||..+.+..+-+.-..+.-. ..++.+.||..
T Consensus 201 ~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~-------------~~~w~vSWS~s 267 (299)
T KOG1332|consen 201 RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFP-------------DVVWRVSWSLS 267 (299)
T ss_pred hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCC-------------cceEEEEEecc
Confidence 1257788999999999953 57888875 999999987432222211111111 11568999999
Q ss_pred CCEEEEEeCCCcEEEEecCCC
Q 010287 409 GGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 409 ~~~l~~~~~dg~i~vwd~~~~ 429 (513)
|+.|+.++.|+.|.+|.-...
T Consensus 268 Gn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 268 GNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred ccEEEEecCCcEEEEEEeCCC
Confidence 999999999999999976543
No 114
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.1e-24 Score=205.79 Aligned_cols=235 Identities=14% Similarity=0.162 Sum_probs=171.7
Q ss_pred eccccCCeEEEEecc-CCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287 228 AHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 305 (513)
Q Consensus 228 ~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 305 (513)
+.+|.+.|.+++|+| ++++|++| .|++|++||+.+........ .....+.+|...|.+++|+|++.++|++++.|+.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~-~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNIS-DPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccC-cceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 468999999999999 78899998 79999999997643210000 0002567899999999999986579999999999
Q ss_pred EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccc
Q 010287 306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL 384 (513)
Q Consensus 306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~ 384 (513)
|++||++++.. ... +.+|...|.+++|+|++.+|++++. +.|++||+++ ++.+..+.+|...
T Consensus 150 VrIWDl~tg~~----~~~------------l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs-g~~v~tl~~H~~~ 212 (493)
T PTZ00421 150 VNVWDVERGKA----VEV------------IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD-GTIVSSVEAHASA 212 (493)
T ss_pred EEEEECCCCeE----EEE------------EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC-CcEEEEEecCCCC
Confidence 99999988754 222 3445578999999999999999875 9999999997 7778888777653
Q ss_pred ccccccccccCCccceeeEEEeCCCCEEEEEe----CCCcEEEEecCCCCccceeecCCC-CceeEEEEcCCCCceeeec
Q 010287 385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGS----YSNLFRVFGCSEGSAESTTLEASK-NPMRRQVQTPSRPSRPLGS 459 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~ 459 (513)
. ...+.|.+++..+++++ .|+.|++||+++..........+. ..+....++++++.|++++
T Consensus 213 ~--------------~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 213 K--------------SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred c--------------ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEE
Confidence 2 12577888888877654 479999999987654444444333 3455667899999998887
Q ss_pred -CCCeEEEecCCCCCccccC-CccccccCCeeEEEEeCCC
Q 010287 460 -LSGVVRRVKGADNSALDAN-GNAFDFSMKLLHLAWHPSE 497 (513)
Q Consensus 460 -~d~~i~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~sp~~ 497 (513)
.|+.|++ ++....... .....+..++..++|.|..
T Consensus 279 kgDg~Iri---wdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 279 KGEGNIRC---FELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred eCCCeEEE---EEeeCCceEEEeeccCCCCCcceEecccc
Confidence 4999999 222211111 1112235567788887764
No 115
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=9.2e-27 Score=199.04 Aligned_cols=274 Identities=21% Similarity=0.296 Sum_probs=207.8
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
+.++.+.|.+ +...|++++.|..|++|++...+......
T Consensus 176 gev~~v~~l~--~sdtlatgg~Dr~Ik~W~v~~~k~~~~~t--------------------------------------- 214 (459)
T KOG0288|consen 176 GEVHDVEFLR--NSDTLATGGSDRIIKLWNVLGEKSELIST--------------------------------------- 214 (459)
T ss_pred cccceeEEcc--Ccchhhhcchhhhhhhhhcccchhhhhhh---------------------------------------
Confidence 8899999966 54589999999999999998765222111
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
+.+..+.|+++.|.++++.++++ .|+.+++|++...+...
T Consensus 215 -----------------------------------LaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---- 255 (459)
T KOG0288|consen 215 -----------------------------------LAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---- 255 (459)
T ss_pred -----------------------------------hhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhh----
Confidence 23445679999999999988887 79999999998655432
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 351 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 351 (513)
++.+|++.|+++.|.... ..+++|+.|.+|++||+....+.... +.+ ..+..|..+
T Consensus 256 ----TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~---l~~--------------S~cnDI~~~-- 311 (459)
T KOG0288|consen 256 ----TLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTV---LPG--------------SQCNDIVCS-- 311 (459)
T ss_pred ----hhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheeccc---ccc--------------ccccceEec--
Confidence 678999999999999886 56999999999999999885542211 111 235555554
Q ss_pred CCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287 352 GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 430 (513)
Q Consensus 352 ~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 430 (513)
...+++|. |+.|++||++. ..+......+.. |+++..++++..|.+++.|.++.+.|+++.
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs-~~~~~sv~~gg~----------------vtSl~ls~~g~~lLsssRDdtl~viDlRt~- 373 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRS-ADKTRSVPLGGR----------------VTSLDLSMDGLELLSSSRDDTLKVIDLRTK- 373 (459)
T ss_pred ceeeeecccccceEEEeccC-CceeeEeecCcc----------------eeeEeeccCCeEEeeecCCCceeeeecccc-
Confidence 45666676 48999999996 777777776663 469999999999999999999999999976
Q ss_pred ccceeecCC----CCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCcccc-ccC-CeeEEEEeCCCCEEEEEc
Q 010287 431 AESTTLEAS----KNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD-FSM-KLLHLAWHPSENSIACAA 504 (513)
Q Consensus 431 ~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~-~~~-~i~~~~~sp~~~~la~~~ 504 (513)
.+..++.+. ...++.++|||++.|+|+||.||.|+| |...+..+...... ++. .|++++|+|.|..|++++
T Consensus 374 eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~i---W~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 374 EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYI---WSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred cEEEEeeccccccccccceeEECCCCceeeeccCCCcEEE---EEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 444555432 234789999999999999999999999 44432222222221 222 699999999999999887
Q ss_pred -CCcEEEE
Q 010287 505 -SNSLYMY 511 (513)
Q Consensus 505 -~~~~~i~ 511 (513)
...+.+|
T Consensus 451 k~~~v~lW 458 (459)
T KOG0288|consen 451 KQKAVTLW 458 (459)
T ss_pred CCcceEec
Confidence 5555555
No 116
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.6e-25 Score=181.41 Aligned_cols=254 Identities=17% Similarity=0.311 Sum_probs=189.4
Q ss_pred ccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceE
Q 010287 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (513)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (513)
+...|.+.+.| .+..|..+|+|++.+ |.|+|+|+.|-+|+|||+......
T Consensus 27 ~s~~~~l~~lF------~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ql---------------------- 76 (362)
T KOG0294|consen 27 DSVKPTLKPLF------AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQL---------------------- 76 (362)
T ss_pred cccceeeeccc------cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhh----------------------
Confidence 44455555554 366799999999976 789999999999999998766542
Q ss_pred eccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcc
Q 010287 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (513)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (513)
..+-.|. +.|+++.|.+......|++|+.||.|.+|++..-.+...
T Consensus 77 -g~ll~Ha------------gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s--------------------- 122 (362)
T KOG0294|consen 77 -GILLSHA------------GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS--------------------- 122 (362)
T ss_pred -cceeccc------------cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee---------------------
Confidence 3455566 889999997644344899999999999999987654332
Q ss_pred cccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-c
Q 010287 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D 251 (513)
Q Consensus 173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~ 251 (513)
+.+|.+.|+.++.+|.+++-++- .
T Consensus 123 -------------------------------------------------------lK~H~~~Vt~lsiHPS~KLALsVg~ 147 (362)
T KOG0294|consen 123 -------------------------------------------------------LKAHKGQVTDLSIHPSGKLALSVGG 147 (362)
T ss_pred -------------------------------------------------------ecccccccceeEecCCCceEEEEcC
Confidence 46888889999999999887765 8
Q ss_pred CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCC
Q 010287 252 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 331 (513)
Q Consensus 252 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 331 (513)
|+.+++||+-+++..+.+ .+ ....+.+.|+|.| ..|+.+.. ..|-+|.+.+..+. .....+
T Consensus 148 D~~lr~WNLV~Gr~a~v~------~L---~~~at~v~w~~~G-d~F~v~~~-~~i~i~q~d~A~v~----~~i~~~---- 208 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVAFVL------NL---KNKATLVSWSPQG-DHFVVSGR-NKIDIYQLDNASVF----REIENP---- 208 (362)
T ss_pred CceeeeehhhcCccceee------cc---CCcceeeEEcCCC-CEEEEEec-cEEEEEecccHhHh----hhhhcc----
Confidence 999999999988765432 11 2334559999999 66666554 56888988775541 111111
Q ss_pred CccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEE--EeCC
Q 010287 332 TRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC--LSGD 408 (513)
Q Consensus 332 ~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~~ 408 (513)
..+.++.|- ++..|++|. ++.|.+||... ..+...+.+|...+. ++. -.|+
T Consensus 209 ---------~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK---------------~i~~~~~~~ 262 (362)
T KOG0294|consen 209 ---------KRILCATFL-DGSELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVK---------------DIASYTNPE 262 (362)
T ss_pred ---------ccceeeeec-CCceEEEecCCceEEEeccCC-Cccceeeecchhhee---------------eeEEEecCC
Confidence 236666665 555666655 49999999996 889999999987643 343 3567
Q ss_pred CCEEEEEeCCCcEEEEecCCCC
Q 010287 409 GGRVATGSYSNLFRVFGCSEGS 430 (513)
Q Consensus 409 ~~~l~~~~~dg~i~vwd~~~~~ 430 (513)
+.+|++++.||.|++||++...
T Consensus 263 ~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 263 HEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred ceEEEEeccCceEEEEEccccc
Confidence 8899999999999999998653
No 117
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.5e-26 Score=204.73 Aligned_cols=251 Identities=19% Similarity=0.243 Sum_probs=188.8
Q ss_pred eccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCc-ceeeecccCccccccccCCeEEEEE-eCCCCeEEEEEeCCC
Q 010287 228 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN-QSFNIVDVKPANMEDLTEVITSAEF-HPTHCNMLAYSSSKG 304 (513)
Q Consensus 228 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~~~~~dg 304 (513)
+..|.+.|+.++...+++.|+++ .|-+|++|+..... -+. ..+..|.+.|.|+++ .++. .++|+|+.|+
T Consensus 69 me~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~-------stir~H~DYVkcla~~ak~~-~lvaSgGLD~ 140 (735)
T KOG0308|consen 69 MEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCM-------STIRTHKDYVKCLAYIAKNN-ELVASGGLDR 140 (735)
T ss_pred hhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhH-------hhhhcccchheeeeecccCc-eeEEecCCCc
Confidence 46888999999999999999998 79999999998664 122 267889999999999 6666 8999999999
Q ss_pred cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccc
Q 010287 305 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH 383 (513)
Q Consensus 305 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~ 383 (513)
.|.+||+.++.. +.+..++.... .....+++.+|++++.++.|..|++|+- +.+++||.++ .+.+..+++|..
T Consensus 141 ~IflWDin~~~~--~l~~s~n~~t~---~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt-~~kimkLrGHTd 214 (735)
T KOG0308|consen 141 KIFLWDINTGTA--TLVASFNNVTV---NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT-CKKIMKLRGHTD 214 (735)
T ss_pred cEEEEEccCcch--hhhhhcccccc---ccCCCCCccceeeeecCCcceEEEecCcccceEEecccc-ccceeeeecccc
Confidence 999999998732 11122221111 1112377889999999999988888775 9999999998 777888889987
Q ss_pred cccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCe
Q 010287 384 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 463 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 463 (513)
.+ ..+..++||..+++++.||+|++||+... .-+.++..|...|+++..+|+-..+.+|+.||.
T Consensus 215 NV---------------r~ll~~dDGt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~ 278 (735)
T KOG0308|consen 215 NV---------------RVLLVNDDGTRLLSASSDGTIRLWDLGQQ-RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGN 278 (735)
T ss_pred ce---------------EEEEEcCCCCeEeecCCCceEEeeecccc-ceeeeEEeccCceEEEeeCCCcceEEecCCCCc
Confidence 63 48899999999999999999999999866 334789999999999999999999999999999
Q ss_pred EEEecCCCCCccccCCccccccCCeeEEEEeCCCCE-EEEEcCCcEEEE
Q 010287 464 VRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENS-IACAASNSLYMY 511 (513)
Q Consensus 464 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~-la~~~~~~~~i~ 511 (513)
|....-..+. .......-..+|..+..+...+- -++..+..+.-|
T Consensus 279 i~~Tdl~n~~---~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW 324 (735)
T KOG0308|consen 279 IYRTDLRNPA---KSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRW 324 (735)
T ss_pred EEecccCCch---hheEeecCCCchhhhhhccccCCceeeeccccceec
Confidence 9982222221 11111222445566655543332 333335555444
No 118
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=4.3e-25 Score=208.67 Aligned_cols=254 Identities=15% Similarity=0.217 Sum_probs=201.9
Q ss_pred cccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEe
Q 010287 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (513)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (513)
...|+..+. ........+|.+.|.+++|..-+.+|++|+.|.+++|||..+++. .
T Consensus 230 l~~~~~~~~--~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C-----------------------~ 284 (537)
T KOG0274|consen 230 LHLWDLNNG--YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC-----------------------T 284 (537)
T ss_pred eEEeecccc--eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE-----------------------E
Confidence 347877774 334445889999999999998888999999999999999888774 4
Q ss_pred ccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCccc
Q 010287 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (513)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (513)
..+.+|. +.|.++... ...+++|+.|.+|++|+++++.+..+
T Consensus 285 ~~l~gh~------------stv~~~~~~----~~~~~sgs~D~tVkVW~v~n~~~l~l---------------------- 326 (537)
T KOG0274|consen 285 HSLQGHT------------SSVRCLTID----PFLLVSGSRDNTVKVWDVTNGACLNL---------------------- 326 (537)
T ss_pred EEecCCC------------ceEEEEEcc----CceEeeccCCceEEEEeccCcceEEE----------------------
Confidence 7788999 889999873 34788889999999999998876553
Q ss_pred ccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cC
Q 010287 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD 252 (513)
Q Consensus 174 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d 252 (513)
+.+|.+.|.++..+ +.++++| .|
T Consensus 327 ------------------------------------------------------~~~h~~~V~~v~~~--~~~lvsgs~d 350 (537)
T KOG0274|consen 327 ------------------------------------------------------LRGHTGPVNCVQLD--EPLLVSGSYD 350 (537)
T ss_pred ------------------------------------------------------eccccccEEEEEec--CCEEEEEecC
Confidence 34588999999988 7788888 79
Q ss_pred CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCc-ccccccceeeccccCCC
Q 010287 253 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS-ALCDTHSKLFEEQEAPG 331 (513)
Q Consensus 253 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~ 331 (513)
++|++||+.+++.+. .+.+|...|.++.+.+. ..+++|+.|+.|++||+++. +. +.++.
T Consensus 351 ~~v~VW~~~~~~cl~--------sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c----~~tl~------ 410 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLK--------SLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKC----IHTLQ------ 410 (537)
T ss_pred ceEEEEEhhhceeee--------eecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhh----hhhhc------
Confidence 999999999666443 67899999999988775 57999999999999999987 43 44444
Q ss_pred CccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecc-cccccccccccccCCccceeeEEEeCCC
Q 010287 332 TRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH-EHLRPKLCDLYENDSIFDKFECCLSGDG 409 (513)
Q Consensus 332 ~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 409 (513)
+|.+-+..+.+ .+++|++++ |++|++||... ++.++.+.++ ... |+.+++. .
T Consensus 411 ------~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~-~~~~~~~~~~~~~~---------------v~~l~~~--~ 464 (537)
T KOG0274|consen 411 ------GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEE-GECLRTLEGRHVGG---------------VSALALG--K 464 (537)
T ss_pred ------CCccccccccc--ccceeEeccccccEEEeeccc-CceeeeeccCCccc---------------EEEeecC--c
Confidence 44455654443 578888876 59999999996 8888888874 222 2344443 4
Q ss_pred CEEEEEeCCCcEEEEecCCCCcc
Q 010287 410 GRVATGSYSNLFRVFGCSEGSAE 432 (513)
Q Consensus 410 ~~l~~~~~dg~i~vwd~~~~~~~ 432 (513)
..+++++.||.+++||++++...
T Consensus 465 ~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 465 EEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred ceEEEEecCCeeEEEecccCchh
Confidence 67889999999999999988544
No 119
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=3.6e-25 Score=192.02 Aligned_cols=231 Identities=18% Similarity=0.279 Sum_probs=169.5
Q ss_pred cccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCC
Q 010287 104 DYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (513)
Q Consensus 104 ~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 183 (513)
+-...+.|.+.|+.+++.|... ..+++.+..+.+.|||..+-.-.......
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp-~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~---------------------------- 166 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNP-NIVATKTSSGDVYVFDYTKHPSKPKASGE---------------------------- 166 (422)
T ss_pred EEEEeccCCccchhhhhCCCCC-cEEEecCCCCCEEEEEeccCCCccccccc----------------------------
Confidence 3334455668999999998543 57777899999999998764321110000
Q ss_pred CccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CCEEEEE-cCCeEEEEEcC
Q 010287 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLE 261 (513)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~vwd~~ 261 (513)
.... ..+.+|...-.+++|++. .-.|+++ +|++|++||+.
T Consensus 167 -------------------~~Pd-------------------l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~ 208 (422)
T KOG0264|consen 167 -------------------CRPD-------------------LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDIN 208 (422)
T ss_pred -------------------CCCc-------------------eEEEeecccccccccccccceeEeeccCCCcEEEEecc
Confidence 0001 124688887788999985 3355555 79999999998
Q ss_pred CCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccc
Q 010287 262 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 341 (513)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (513)
.....-.... ....+.+|...|..++|++....+|++++.|+.+.|||+|++.. +... ...+|.+
T Consensus 209 ~~~~~~~~~~-p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~--~~~~------------~~~ah~~ 273 (422)
T KOG0264|consen 209 AESKEDKVVD-PKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS--KPSH------------SVKAHSA 273 (422)
T ss_pred ccccCCcccc-ceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC--CCcc------------cccccCC
Confidence 6554211111 01356889999999999998878999999999999999997311 1111 2456779
Q ss_pred cEEEEEEee-cCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC-EEEEEeCC
Q 010287 342 SISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYS 418 (513)
Q Consensus 342 ~v~~i~~sp-~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d 418 (513)
.|.|++|+| ++..||+|+ |++|.+||+++-.+++.++.+|... |+.+.|+|... .|++++.|
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de---------------v~~V~WSPh~etvLASSg~D 338 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDE---------------VFQVEWSPHNETVLASSGTD 338 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcc---------------eEEEEeCCCCCceeEecccC
Confidence 999999999 556666777 6999999999878889999999876 56999999764 67888899
Q ss_pred CcEEEEecCCCCc
Q 010287 419 NLFRVFGCSEGSA 431 (513)
Q Consensus 419 g~i~vwd~~~~~~ 431 (513)
+.+.+||+..-..
T Consensus 339 ~rl~vWDls~ig~ 351 (422)
T KOG0264|consen 339 RRLNVWDLSRIGE 351 (422)
T ss_pred CcEEEEecccccc
Confidence 9999999986433
No 120
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=8.4e-25 Score=180.32 Aligned_cols=295 Identities=16% Similarity=0.202 Sum_probs=205.0
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
.++.+-+|+ +||.++++|+.|..|+|.|++.--.+. .....
T Consensus 113 ~~cR~aafs--~DG~lvATGsaD~SIKildvermlaks-~~~em------------------------------------ 153 (430)
T KOG0640|consen 113 SPCRAAAFS--PDGSLVATGSADASIKILDVERMLAKS-KPKEM------------------------------------ 153 (430)
T ss_pred cceeeeeeC--CCCcEEEccCCcceEEEeehhhhhhhc-chhhh------------------------------------
Confidence 889999994 599999999999999999997421111 00000
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
..++........+ .+..|.++|+++.|+|....|++| .|++|+++|+........
T Consensus 154 --------------------~~~~~qa~hPvIR-TlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA--- 209 (430)
T KOG0640|consen 154 --------------------ISGDTQARHPVIR-TLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRA--- 209 (430)
T ss_pred --------------------ccCCcccCCceEe-ehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHH---
Confidence 0000000011222 257899999999999999999999 799999999974322110
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 351 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 351 (513)
...-....+|.++.|+|.| .+++.|..-..+++||+.+-+.... .+ .-.+|.+.|+++.+++.
T Consensus 210 ---~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Qcfvs-------an------Pd~qht~ai~~V~Ys~t 272 (430)
T KOG0640|consen 210 ---FKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVS-------AN------PDDQHTGAITQVRYSST 272 (430)
T ss_pred ---HHHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeee-------cC------cccccccceeEEEecCC
Confidence 0112235789999999999 8999999999999999998664211 11 13668899999999999
Q ss_pred CCEEEEEeC-CeEEEEEccCCCCCeeeee-cccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 352 GRHILSRDY-MTLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 352 ~~~l~~~~~-~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
+++.++++. |.|++||--+ ++++.++. .|.+. .|.+..|..+++|+++.+.|..+++|.+.++
T Consensus 273 ~~lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~gs--------------evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 273 GSLYVTASKDGAIKLWDGVS-NRCVRTIGNAHGGS--------------EVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred ccEEEEeccCCcEEeecccc-HHHHHHHHhhcCCc--------------eeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 999999985 9999999876 77777764 34432 1458899999999999999999999999998
Q ss_pred CccceeecCCC--C---ceeE--------EEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCC
Q 010287 430 SAESTTLEASK--N---PMRR--------QVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPS 496 (513)
Q Consensus 430 ~~~~~~~~~~~--~---~v~~--------~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 496 (513)
..+ ..+.+.. + --.. ....||....-.+++|.. .........++|.+.+..+.-||.
T Consensus 338 R~l-~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaR---------tadr~~l~slgHn~a~R~i~HSP~ 407 (430)
T KOG0640|consen 338 RML-KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDAR---------TADRVALLSLGHNGAVRWIVHSPV 407 (430)
T ss_pred ceE-EEEecCCcccchhhhhhhhhcCccceEEccccccCceeecccc---------chhhhhhcccCCCCCceEEEeCCC
Confidence 443 4443321 1 1112 233444433333333211 011222345579999999999999
Q ss_pred CCEEEEEc-CCcEEEEe
Q 010287 497 ENSIACAA-SNSLYMYY 512 (513)
Q Consensus 497 ~~~la~~~-~~~~~i~~ 512 (513)
+..+.+++ +-..++|+
T Consensus 408 ~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 408 EPAFMTCSDDFRARFWY 424 (430)
T ss_pred CCceeeecccceeeeee
Confidence 99988887 44666664
No 121
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.8e-24 Score=175.86 Aligned_cols=270 Identities=12% Similarity=0.224 Sum_probs=204.6
Q ss_pred EEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeecCCCce
Q 010287 49 HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSAL 128 (513)
Q Consensus 49 ~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 128 (513)
.|++|++...|.=+++.-... .+.-+..|.+.....+.+|. .+|++++. ++.+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~-----------~~~~s~~~~l~~lF~~~aH~------------~sitavAV----s~~~ 55 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPK-----------GCTDSVKPTLKPLFAFSAHA------------GSITALAV----SGPY 55 (362)
T ss_pred eEEEeeeeeEEEEEEeccCcc-----------ccccccceeeeccccccccc------------cceeEEEe----ccee
Confidence 477888887777777643321 11112234444455678888 89999999 5679
Q ss_pred EEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCcee
Q 010287 129 YLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLR 208 (513)
Q Consensus 129 l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 208 (513)
+++|+.|-+|+|||+........
T Consensus 56 ~aSGssDetI~IYDm~k~~qlg~--------------------------------------------------------- 78 (362)
T KOG0294|consen 56 VASGSSDETIHIYDMRKRKQLGI--------------------------------------------------------- 78 (362)
T ss_pred EeccCCCCcEEEEeccchhhhcc---------------------------------------------------------
Confidence 99999999999999987642211
Q ss_pred ceeeccCCcccccceeeEeeccccCCeEEEEeccCCC--EEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeE
Q 010287 209 LPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE--TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT 285 (513)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 285 (513)
+..|.+.|+++.|.++-. .|++| +||.|.+|+...-. +.. .+.+|...|+
T Consensus 79 -------------------ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~-~~~-------slK~H~~~Vt 131 (362)
T KOG0294|consen 79 -------------------LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE-LLK-------SLKAHKGQVT 131 (362)
T ss_pred -------------------eeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE-Eee-------eecccccccc
Confidence 346788899999998754 77887 89999999987543 322 6788999999
Q ss_pred EEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEE
Q 010287 286 SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKL 365 (513)
Q Consensus 286 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~i 365 (513)
.++.+|.+ ++-++.+.|+.+++||+-+|+. ...+... ...+.+.|+|.|.+++.+....|-+
T Consensus 132 ~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~----a~v~~L~-------------~~at~v~w~~~Gd~F~v~~~~~i~i 193 (362)
T KOG0294|consen 132 DLSIHPSG-KLALSVGGDQVLRTWNLVRGRV----AFVLNLK-------------NKATLVSWSPQGDHFVVSGRNKIDI 193 (362)
T ss_pred eeEecCCC-ceEEEEcCCceeeeehhhcCcc----ceeeccC-------------CcceeeEEcCCCCEEEEEeccEEEE
Confidence 99999999 9999999999999999988765 2222222 2345599999999888887788999
Q ss_pred EEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeE
Q 010287 366 WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRR 445 (513)
Q Consensus 366 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 445 (513)
|.+.+ ......+..... +.++.|- ++.+|++|++|+.|.+||.... .....+.+|...|..
T Consensus 194 ~q~d~-A~v~~~i~~~~r----------------~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RVK~ 254 (362)
T KOG0294|consen 194 YQLDN-ASVFREIENPKR----------------ILCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRVKD 254 (362)
T ss_pred Eeccc-HhHhhhhhcccc----------------ceeeeec-CCceEEEecCCceEEEeccCCC-ccceeeecchhheee
Confidence 99986 554444433311 1244444 6778999999999999999875 555888999999998
Q ss_pred EEE--cCCCCceeeecCCCeEEE
Q 010287 446 QVQ--TPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 446 ~~~--~~~~~~l~~~~~d~~i~~ 466 (513)
+.+ .|++.+|+++|.||.|++
T Consensus 255 i~~~~~~~~~~lvTaSSDG~I~v 277 (362)
T KOG0294|consen 255 IASYTNPEHEYLVTASSDGFIKV 277 (362)
T ss_pred eEEEecCCceEEEEeccCceEEE
Confidence 874 678899999999999999
No 122
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.4e-24 Score=188.44 Aligned_cols=295 Identities=15% Similarity=0.157 Sum_probs=211.1
Q ss_pred cccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccc
Q 010287 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (513)
Q Consensus 35 ~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (513)
.+.|++|.|+|...+|++++.||+++||.+.+.... ..+.+.-.. .+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~---------------------~lqS~~l~~------------fP 259 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP---------------------KLQSIHLEK------------FP 259 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh---------------------hheeeeecc------------Cc
Confidence 579999999999999999999999999998765531 111111112 67
Q ss_pred ceeEEEeecCCCc-eEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287 115 INKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (513)
Q Consensus 115 i~~i~~~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (513)
|.+.+|.| +|. .+++++....+..||+.+.+...+......+.+. -....+++++.++
T Consensus 260 i~~a~f~p--~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~------------~e~FeVShd~~fi------- 318 (514)
T KOG2055|consen 260 IQKAEFAP--NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKS------------MERFEVSHDSNFI------- 318 (514)
T ss_pred cceeeecC--CCceEEEecccceEEEEeeccccccccccCCCCcccch------------hheeEecCCCCeE-------
Confidence 99999976 666 8888999999999999998776654443322111 1134566777755
Q ss_pred CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc
Q 010287 194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 272 (513)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~ 272 (513)
+..+..|.|.+....+.+.+... .-.+.|..++|+.+++.|+++ .+|.|.+||++.........
T Consensus 319 -----a~~G~~G~I~lLhakT~eli~s~--------KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~-- 383 (514)
T KOG2055|consen 319 -----AIAGNNGHIHLLHAKTKELITSF--------KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV-- 383 (514)
T ss_pred -----EEcccCceEEeehhhhhhhhhee--------eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe--
Confidence 77888889988777666653322 223568999999999988876 79999999999764333221
Q ss_pred CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC
Q 010287 273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 352 (513)
Q Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~ 352 (513)
....-.=++++.++++ .+||+|+..|.|.|||..+.... ..+.+...+......|++++|+||.
T Consensus 384 -----D~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s----------~~PkPik~~dNLtt~Itsl~Fn~d~ 447 (514)
T KOG2055|consen 384 -----DDGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFAS----------TNPKPIKTVDNLTTAITSLQFNHDA 447 (514)
T ss_pred -----ecCccceeeeeecCCC-ceEEeccCcceEEEeccchhhcc----------CCCCchhhhhhhheeeeeeeeCcch
Confidence 1111223577788998 89999999999999997653221 1111111233344689999999999
Q ss_pred CEEEEEeC---CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287 353 RHILSRDY---MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 427 (513)
Q Consensus 353 ~~l~~~~~---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 427 (513)
++|+.++. ..+++-.+.+ ......++..... +.-|++++|||.+.+|+.|..+|.+.+|.+.
T Consensus 448 qiLAiaS~~~knalrLVHvPS-~TVFsNfP~~n~~------------vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 448 QILAIASRVKKNALRLVHVPS-CTVFSNFPTSNTK------------VGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhhhhccccceEEEeccc-eeeeccCCCCCCc------------ccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 99998763 8899988875 5555555444332 2236699999999999999999999999874
No 123
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.5e-25 Score=181.59 Aligned_cols=298 Identities=16% Similarity=0.275 Sum_probs=229.1
Q ss_pred cceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcc
Q 010287 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (513)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (513)
.+++..++.||. +.|..++-- .....+.+++.|.+.+||.++++.|...
T Consensus 137 ~~~lvre~~GHk------------DGiW~Vaa~--~tqpi~gtASADhTA~iWs~Esg~CL~~----------------- 185 (481)
T KOG0300|consen 137 KFRLVRELEGHK------------DGIWHVAAD--STQPICGTASADHTARIWSLESGACLAT----------------- 185 (481)
T ss_pred eEeehhhhcccc------------cceeeehhh--cCCcceeecccccceeEEeeccccceee-----------------
Confidence 345667888998 999999884 3344788899999999999999886542
Q ss_pred cCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEE
Q 010287 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 248 (513)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 248 (513)
..+|.+.|++++|++.+.+++
T Consensus 186 -----------------------------------------------------------Y~GH~GSVNsikfh~s~~L~l 206 (481)
T KOG0300|consen 186 -----------------------------------------------------------YTGHTGSVNSIKFHNSGLLLL 206 (481)
T ss_pred -----------------------------------------------------------ecccccceeeEEeccccceEE
Confidence 258999999999999999999
Q ss_pred EE-cCCeEEEEEcCC----Ccc----------ee------------------eecccCccccccccCCeEEEEEeCCCCe
Q 010287 249 SA-DDLRINLWNLEI----SNQ----------SF------------------NIVDVKPANMEDLTEVITSAEFHPTHCN 295 (513)
Q Consensus 249 s~-~d~~i~vwd~~~----~~~----------~~------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 295 (513)
++ +|++..||...- .+. .. ..+......+.+|...|.+..|...+ +
T Consensus 207 TaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~ 285 (481)
T KOG0300|consen 207 TASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-Q 285 (481)
T ss_pred EccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-c
Confidence 98 799999997321 100 00 00001113567899999999999888 8
Q ss_pred EEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCC
Q 010287 296 MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGP 374 (513)
Q Consensus 296 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~ 374 (513)
.+++++.|.+-.+||++++.... .+.+|....+.++-+|..+++++.+. .+.++||++..-..
T Consensus 286 Q~vTaSWDRTAnlwDVEtge~v~----------------~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~s 349 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGEVVN----------------ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQS 349 (481)
T ss_pred eeeeeeccccceeeeeccCceec----------------cccCcchhccccccCCcceEEEEeccCceeEeccchhhcce
Confidence 99999999999999999998732 25677788999999999999999874 99999999854556
Q ss_pred eeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCc
Q 010287 375 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS 454 (513)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 454 (513)
+..|++|... |+++.|.-|. .+++|++|.+|++||+++....+.++. ...+++.++++..++.
T Consensus 350 V~VFQGHtdt---------------VTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~i 412 (481)
T KOG0300|consen 350 VAVFQGHTDT---------------VTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPI 412 (481)
T ss_pred eeeecccccc---------------eeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCce
Confidence 7888999876 5688998765 478999999999999997654444443 4568889999999999
Q ss_pred eeeecCCCeEEE--ecCCCCCccccCC-ccccccCCeeEEEEeCCC---CEEEEEcCCcEEEEe
Q 010287 455 RPLGSLSGVVRR--VKGADNSALDANG-NAFDFSMKLLHLAWHPSE---NSIACAASNSLYMYY 512 (513)
Q Consensus 455 l~~~~~d~~i~~--~~~~~~~~~~~~~-~~~~~~~~i~~~~~sp~~---~~la~~~~~~~~i~~ 512 (513)
+|.--.++.|++ ..|.++. .+.. ...+|...|++++|..+. +++.+|-+..++=|+
T Consensus 413 IAiPhDNRqvRlfDlnG~Rla--RlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 413 IAIPHDNRQVRLFDLNGNRLA--RLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred EEeccCCceEEEEecCCCccc--cCCcccccccceeeeeeeccccCcccccccccccceeeeeE
Confidence 999999999999 4454444 2332 234689999999998764 334455466666554
No 124
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=2.1e-24 Score=196.46 Aligned_cols=274 Identities=15% Similarity=0.244 Sum_probs=218.6
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
+..+|.+.|..+++.+.. .++++++||++++|+-...+.+ -...+.+|.
T Consensus 9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l---------------------~~~~~~~~~--------- 57 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYL---------------------ETHAFEGPK--------- 57 (745)
T ss_pred EeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccc---------------------cceecccCc---------
Confidence 466899999999877554 8999999999999996655432 123355555
Q ss_pred ccccccee-EEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287 110 EIEEKINK-IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (513)
Q Consensus 110 ~~~~~i~~-i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 188 (513)
+-|.. ++|.+ .++..+++++.|.+|.+|...+.....
T Consensus 58 ---g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~P~~-------------------------------------- 95 (745)
T KOG0301|consen 58 ---GFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQAEPLY-------------------------------------- 95 (745)
T ss_pred ---ceeeccceecc-ccCcceEeecccceEEEEecCCCCchh--------------------------------------
Confidence 55666 88866 455679999999999999987654222
Q ss_pred ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287 189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 267 (513)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~ 267 (513)
++.+|...|.|++...++. +++| -|.++++|....-. .
T Consensus 96 --------------------------------------~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~--~ 134 (745)
T KOG0301|consen 96 --------------------------------------TLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV--Y 134 (745)
T ss_pred --------------------------------------hhhccccceeeeecCCcCc-eEecccccceEEecchhhh--c
Confidence 1579999999999888887 7888 59999999875222 1
Q ss_pred eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287 268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 347 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 347 (513)
.+++|+..|..+..-|++ .+++|+.|.+|++|.- +.. +++ +.+|..-|+.++
T Consensus 135 --------~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~----l~t------------f~gHtD~VRgL~ 186 (745)
T KOG0301|consen 135 --------SLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTL----LKT------------FSGHTDCVRGLA 186 (745)
T ss_pred --------ccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cch----hhh------------hccchhheeeeE
Confidence 568999999999999985 8999999999999975 333 333 456668899999
Q ss_pred EeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287 348 FARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 427 (513)
Q Consensus 348 ~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 427 (513)
+-+++.++-++.||.|+.|++. +..+.++.+|... ++++...+++..++++++|+++++|+..
T Consensus 187 vl~~~~flScsNDg~Ir~w~~~--ge~l~~~~ghtn~---------------vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 187 VLDDSHFLSCSNDGSIRLWDLD--GEVLLEMHGHTNF---------------VYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EecCCCeEeecCCceEEEEecc--CceeeeeeccceE---------------EEEEEecCCCCeEEEecCCceEEEeecC
Confidence 9998888888888999999995 8999999999877 4588878888899999999999999976
Q ss_pred CCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
...+.+......++++.+-++|. +++|+.||.||+
T Consensus 250 ---e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrV 284 (745)
T KOG0301|consen 250 ---ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRV 284 (745)
T ss_pred ---ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEE
Confidence 33466777777888888877765 567778999999
No 125
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=7.5e-24 Score=183.93 Aligned_cols=287 Identities=15% Similarity=0.152 Sum_probs=208.0
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeee-eeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK-VFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
|.-+|.+++++| ++.+.++++.|++|.-|++.+++... +..-. .
T Consensus 141 H~~s~~~vals~--d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~--e------------------------------- 185 (479)
T KOG0299|consen 141 HQLSVTSVALSP--DDKRVFSASKDGTILKWDVLTGKKDRYIIERD--E------------------------------- 185 (479)
T ss_pred ccCcceEEEeec--cccceeecCCCcceeeeehhcCcccccccccc--h-------------------------------
Confidence 338899999955 77899999999999999999886331 11100 0
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~ 268 (513)
+ +. .. ..+.+....+|...+.+++.++|+++|++| .|..|.||+.++.+...
T Consensus 186 -----------------v----~k-~~----~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~- 238 (479)
T KOG0299|consen 186 -----------------V----LK-SH----GNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK- 238 (479)
T ss_pred -----------------h----hh-hc----cCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhh-
Confidence 0 00 00 000000013788999999999999999999 69999999999776543
Q ss_pred ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 348 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 348 (513)
.+.+|.+.|.+++|-... ..+++++.|+.|++|++...... .+ +.+|...|.+|..
T Consensus 239 -------~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~v----et------------lyGHqd~v~~Ida 294 (479)
T KOG0299|consen 239 -------VFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYV----ET------------LYGHQDGVLGIDA 294 (479)
T ss_pred -------cccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHH----HH------------HhCCccceeeech
Confidence 568999999999998765 88999999999999998765542 22 4567788999988
Q ss_pred eecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287 349 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 427 (513)
Q Consensus 349 sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 427 (513)
...++.+.+|. |+++++|++. ...-..+.++.... -+++|- +...+++|+.+|.|.+|++.
T Consensus 295 L~reR~vtVGgrDrT~rlwKi~--eesqlifrg~~~si---------------dcv~~I-n~~HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 295 LSRERCVTVGGRDRTVRLWKIP--EESQLIFRGGEGSI---------------DCVAFI-NDEHFVSGSDNGSIALWSLL 356 (479)
T ss_pred hcccceEEeccccceeEEEecc--ccceeeeeCCCCCe---------------eeEEEe-cccceeeccCCceEEEeeec
Confidence 87777777764 6999999996 34444455555332 277777 44578999999999999998
Q ss_pred CCCccceeecCCC-----------CceeEEEEcCCCCceeeecCCCeEEEecCCCCCcc---ccCCccccccCCeeEEEE
Q 010287 428 EGSAESTTLEASK-----------NPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSAL---DANGNAFDFSMKLLHLAW 493 (513)
Q Consensus 428 ~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~ 493 (513)
..+.+...-.+|. .++++++..|...++|+|+.+|.|++ |..... -.....+...+-|++++|
T Consensus 357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrL---W~i~~g~r~i~~l~~ls~~GfVNsl~f 433 (479)
T KOG0299|consen 357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRL---WKIEDGLRAINLLYSLSLVGFVNSLAF 433 (479)
T ss_pred ccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEE---EEecCCccccceeeecccccEEEEEEE
Confidence 7644433222221 27889999999999999999999999 322210 011122235788999999
Q ss_pred eCCCCEEEEEc
Q 010287 494 HPSENSIACAA 504 (513)
Q Consensus 494 sp~~~~la~~~ 504 (513)
+++|++|++|.
T Consensus 434 ~~sgk~ivagi 444 (479)
T KOG0299|consen 434 SNSGKRIVAGI 444 (479)
T ss_pred ccCCCEEEEec
Confidence 99999777553
No 126
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=1.5e-23 Score=194.94 Aligned_cols=365 Identities=15% Similarity=0.190 Sum_probs=243.2
Q ss_pred ccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceE
Q 010287 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (513)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (513)
..+.|++.. .+..-++.++.+.||++.=+|-=+.+|.|..+|+|.|++++.++.+
T Consensus 183 ~lql~Nvrt---~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil---------------------- 237 (910)
T KOG1539|consen 183 RLQLWNVRT---GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL---------------------- 237 (910)
T ss_pred cEEEEEecc---CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE----------------------
Confidence 455677765 2223345567899999999999999999999999999999877642
Q ss_pred eccccCCCCcccccccccccccceeEEEeecCCCceE-EEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (513)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l-~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (513)
.+|+--. +.|+++.| ..||..+ ++++..|.+.+||++..+......-... |.
T Consensus 238 -~sFk~d~------------g~VtslSF--rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~-------~s----- 290 (910)
T KOG1539|consen 238 -MSFKQDW------------GRVTSLSF--RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHY-------GS----- 290 (910)
T ss_pred -EEEEccc------------cceeEEEe--ccCCCeeEEeccCCceEEEEEcCCCeeeeeeecccc-------CC-----
Confidence 2222112 78999999 4466555 4556679999999998876654431110 00
Q ss_pred ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEec-cCCCEEEEE
Q 010287 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNN-SDGETFISA 250 (513)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~ 250 (513)
.....+.|..- +.++.+.|+++++|-...++.. ++..+ +..||..+..|+.|. .++..+.++
T Consensus 291 --v~~~~fl~~ep------------Vl~ta~~DnSlk~~vfD~~dg~--pR~LR-~R~GHs~Pp~~irfy~~~g~~ilsa 353 (910)
T KOG1539|consen 291 --VTGATFLPGEP------------VLVTAGADNSLKVWVFDSGDGV--PRLLR-SRGGHSAPPSCIRFYGSQGHFILSA 353 (910)
T ss_pred --cccceecCCCc------------eEeeccCCCceeEEEeeCCCCc--chhee-eccCCCCCchheeeeccCcEEEEec
Confidence 01122222222 3367778899999987765553 12222 247899999999987 567667666
Q ss_pred -cCCeEEEEEcCCCcce-----------------------------------------------------eeecc-----
Q 010287 251 -DDLRINLWNLEISNQS-----------------------------------------------------FNIVD----- 271 (513)
Q Consensus 251 -~d~~i~vwd~~~~~~~-----------------------------------------------------~~~~~----- 271 (513)
.|++.+.+++....+. ...++
T Consensus 354 ~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~ 433 (910)
T KOG1539|consen 354 KQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT 433 (910)
T ss_pred ccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc
Confidence 5777766654321000 00000
Q ss_pred -----cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEE
Q 010287 272 -----VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 346 (513)
Q Consensus 272 -----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 346 (513)
++|..++.....+++++.++.| ++.+.|+..|.|-+|++.+|-.... |.. -..|+++|+.+
T Consensus 434 ~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~r~s----f~~---------~~ah~~~V~gl 499 (910)
T KOG1539|consen 434 SGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIHRKS----FGD---------SPAHKGEVTGL 499 (910)
T ss_pred cccEEecCccccccCcceEEEEEeccC-ceEEEeccCCeEEEEEcccCeeecc----ccc---------CccccCceeEE
Confidence 0122223344678899999999 9999999999999999998764222 110 14577899999
Q ss_pred EEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeeccccccc----------------------------cccccc-ccCC
Q 010287 347 KFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP----------------------------KLCDLY-ENDS 396 (513)
Q Consensus 347 ~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~-~~~~ 396 (513)
+...-++.+++++ +|.+++||... ..++..+........ -++.+. +.+
T Consensus 500 a~D~~n~~~vsa~~~Gilkfw~f~~-k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n- 577 (910)
T KOG1539|consen 500 AVDGTNRLLVSAGADGILKFWDFKK-KVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGN- 577 (910)
T ss_pred EecCCCceEEEccCcceEEEEecCC-cceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccc-
Confidence 9998888899866 49999999875 433333222111000 000011 122
Q ss_pred ccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCC-CeEEE
Q 010287 397 IFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS-GVVRR 466 (513)
Q Consensus 397 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~ 466 (513)
.+++++|||||++|++++.|++|++||+.++..+- . -.-..+...+.++|.|.+||+.-.| ..|.+
T Consensus 578 --ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID-~-~~vd~~~~sls~SPngD~LAT~Hvd~~gIyl 644 (910)
T KOG1539|consen 578 --RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLID-G-LLVDSPCTSLSFSPNGDFLATVHVDQNGIYL 644 (910)
T ss_pred --ceeeeEeCCCCcEEEEeecCCcEEEEeccCcceee-e-EecCCcceeeEECCCCCEEEEEEecCceEEE
Confidence 25699999999999999999999999999984332 1 2235677899999999999999888 56666
No 127
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.1e-23 Score=183.02 Aligned_cols=277 Identities=16% Similarity=0.282 Sum_probs=206.1
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
+.|++|.|+|.. ..+++++.|+++++|.+.......+..+
T Consensus 214 ~~I~sv~FHp~~--plllvaG~d~~lrifqvDGk~N~~lqS~-------------------------------------- 253 (514)
T KOG2055|consen 214 GGITSVQFHPTA--PLLLVAGLDGTLRIFQVDGKVNPKLQSI-------------------------------------- 253 (514)
T ss_pred CCceEEEecCCC--ceEEEecCCCcEEEEEecCccChhheee--------------------------------------
Confidence 789999998854 4999999999999999976543222111
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCC-EEEEE-cCCeEEEEEcCCCcceeeec
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIV 270 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~vwd~~~~~~~~~~~ 270 (513)
.-...+|.+.+|.|+|. .++++ ....++.||+.+.+.. ++
T Consensus 254 ------------------------------------~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~-k~- 295 (514)
T KOG2055|consen 254 ------------------------------------HLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT-KL- 295 (514)
T ss_pred ------------------------------------eeccCccceeeecCCCceEEEecccceEEEEeeccccccc-cc-
Confidence 12235688999999998 67766 6889999999865532 11
Q ss_pred ccCccccccc-cCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287 271 DVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 349 (513)
Q Consensus 271 ~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 349 (513)
+ .+.++ ...+.....+|++ ++|+..+..|.|.+....+++. +..++.. +.|..++|+
T Consensus 296 --~--~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~el----i~s~Kie-------------G~v~~~~fs 353 (514)
T KOG2055|consen 296 --K--PPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKEL----ITSFKIE-------------GVVSDFTFS 353 (514)
T ss_pred --c--CCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhh----hheeeec-------------cEEeeEEEe
Confidence 1 22333 3457788999999 8999999999999999888876 4444443 679999999
Q ss_pred ecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287 350 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 428 (513)
Q Consensus 350 p~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 428 (513)
.|++.|++.+ +|.|.+||++. ..++..+.-....- -+.+|.++++.|||+|+..|.|.|||..+
T Consensus 354 Sdsk~l~~~~~~GeV~v~nl~~-~~~~~rf~D~G~v~--------------gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 354 SDSKELLASGGTGEVYVWNLRQ-NSCLHRFVDDGSVH--------------GTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred cCCcEEEEEcCCceEEEEecCC-cceEEEEeecCccc--------------eeeeeecCCCceEEeccCcceEEEeccch
Confidence 9998888754 59999999997 67777776444321 24789999999999999999999999654
Q ss_pred C-----CccceeecCCCCceeEEEEcCCCCceeeecC--CCeEEE--------ecCCCCCccccCCccccccCCeeEEEE
Q 010287 429 G-----SAESTTLEASKNPMRRQVQTPSRPSRPLGSL--SGVVRR--------VKGADNSALDANGNAFDFSMKLLHLAW 493 (513)
Q Consensus 429 ~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~--------~~~~~~~~~~~~~~~~~~~~~i~~~~~ 493 (513)
. .+.+..+..-...|..+.|+++.+.||.+|. +..+|+ ...|... -.--+.|++|+|
T Consensus 419 ~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~--------n~~vg~vtc~aF 490 (514)
T KOG2055|consen 419 CFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS--------NTKVGHVTCMAF 490 (514)
T ss_pred hhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCC--------CCcccceEEEEe
Confidence 2 2233445555678999999999999988864 567777 1122111 112357999999
Q ss_pred eCCCCEEEEEc-CCcEEEEe
Q 010287 494 HPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 494 sp~~~~la~~~-~~~~~i~~ 512 (513)
||.+.+||.|. .+.+.+|.
T Consensus 491 SP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 491 SPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred cCCCceEEeecCCCceeeEe
Confidence 99999999998 55666663
No 128
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.9e-23 Score=172.74 Aligned_cols=285 Identities=21% Similarity=0.319 Sum_probs=188.9
Q ss_pred EEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccccee
Q 010287 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (513)
Q Consensus 38 V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~ 117 (513)
-.|+.|++.|.+||+|..||+|.|||+.+.. ....+.+|. .+|.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-----------------------iar~lsaH~------------~pi~s 70 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-----------------------IARMLSAHV------------RPITS 70 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-----------------------hhhhhhccc------------cceeE
Confidence 7899999999999999999999999987654 336688998 99999
Q ss_pred EEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCC
Q 010287 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (513)
Q Consensus 118 i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 197 (513)
++| +++|..|+++|.|..|.+||+..|.+.....+
T Consensus 71 l~W--S~dgr~LltsS~D~si~lwDl~~gs~l~rirf------------------------------------------- 105 (405)
T KOG1273|consen 71 LCW--SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF------------------------------------------- 105 (405)
T ss_pred EEe--cCCCCEeeeecCCceeEEEeccCCCceeEEEc-------------------------------------------
Confidence 999 55999999999999999999998875543222
Q ss_pred CcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCC-EEEEE-cCCeEEEEEcCCCcceeeecccCcc
Q 010287 198 SFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPA 275 (513)
Q Consensus 198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~ 275 (513)
..+|+...|+|..+ .+++. -+..-.+-++..+.. .++...+.
T Consensus 106 ----------------------------------~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~~Lp~d~d 149 (405)
T KOG1273|consen 106 ----------------------------------DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--SVLPKDDD 149 (405)
T ss_pred ----------------------------------cCccceeeeccccCCeEEEEEecCCcEEEEecCCce--eeccCCCc
Confidence 24577788888433 33333 344455555543221 11110000
Q ss_pred ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEE
Q 010287 276 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 355 (513)
Q Consensus 276 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l 355 (513)
........+..|.+.| +++++|...|.+.++|..+.+... .+.... ...|..+.++..|+.|
T Consensus 150 --~dln~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e~va----s~rits-----------~~~IK~I~~s~~g~~l 211 (405)
T KOG1273|consen 150 --GDLNSSASHGVFDRRG-KYIITGTSKGKLLVYDAETLECVA----SFRITS-----------VQAIKQIIVSRKGRFL 211 (405)
T ss_pred --cccccccccccccCCC-CEEEEecCcceEEEEecchheeee----eeeech-----------heeeeEEEEeccCcEE
Confidence 0011223344688888 999999999999999998876532 222111 1468899999999999
Q ss_pred EEE-eCCeEEEEEccC---CCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCCC
Q 010287 356 LSR-DYMTLKLWDINM---DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGS 430 (513)
Q Consensus 356 ~~~-~~~~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~ 430 (513)
+.. +|..|+.|+++. .++-...-..|. ...-+....+ .+++|+.+|.|++.++ ....++||.-..|
T Consensus 212 iiNtsDRvIR~ye~~di~~~~r~~e~e~~~K-~qDvVNk~~W-------k~ccfs~dgeYv~a~s~~aHaLYIWE~~~G- 282 (405)
T KOG1273|consen 212 IINTSDRVIRTYEISDIDDEGRDGEVEPEHK-LQDVVNKLQW-------KKCCFSGDGEYVCAGSARAHALYIWEKSIG- 282 (405)
T ss_pred EEecCCceEEEEehhhhcccCccCCcChhHH-HHHHHhhhhh-------hheeecCCccEEEeccccceeEEEEecCCc-
Confidence 985 569999999862 010000000000 0000111111 1789999999998777 4568999998887
Q ss_pred ccceeecCCC-CceeEEEEcCCCCceeeecCCCeEEE
Q 010287 431 AESTTLEASK-NPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 431 ~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.+...+.+.. .....+.|.|-...+++- ..|.+++
T Consensus 283 sLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~i 318 (405)
T KOG1273|consen 283 SLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYI 318 (405)
T ss_pred ceeeeecCCchhheeecccccceeeeeec-cCCceEE
Confidence 5556666665 444556666666666655 4556665
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.1e-23 Score=194.97 Aligned_cols=275 Identities=15% Similarity=0.197 Sum_probs=204.3
Q ss_pred ccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccc
Q 010287 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (513)
Q Consensus 32 ~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (513)
..|+..-+.|+|.|+|++|.+++.||.|++|+...... .|+... -+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e-----------------~P~ti~-----~~g----------- 56 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE-----------------EPETID-----ISG----------- 56 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc-----------------CCchhh-----ccC-----------
Confidence 36889999999999999999999999999999654421 011111 022
Q ss_pred cccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccC
Q 010287 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (513)
Q Consensus 112 ~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 191 (513)
..|.+++- ++.+|++++.+++|.+|.+..++...+
T Consensus 57 -~~v~~ia~----~s~~f~~~s~~~tv~~y~fps~~~~~i---------------------------------------- 91 (933)
T KOG1274|consen 57 -ELVSSIAC----YSNHFLTGSEQNTVLRYKFPSGEEDTI---------------------------------------- 91 (933)
T ss_pred -ceeEEEee----cccceEEeeccceEEEeeCCCCCccce----------------------------------------
Confidence 66777776 445899999999999999987653211
Q ss_pred CCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeec
Q 010287 192 CASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 270 (513)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~ 270 (513)
+....-++++++|+-+|++++.| +|-.|++-+..+.....
T Consensus 92 ------------------------------------L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~--- 132 (933)
T KOG1274|consen 92 ------------------------------------LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK--- 132 (933)
T ss_pred ------------------------------------eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhe---
Confidence 11222458899999999999999 79999999998766553
Q ss_pred ccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee
Q 010287 271 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 350 (513)
Q Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp 350 (513)
.+.+|.++|.++.|+|.+ ++||+.+.||.|++||+.++.+.. ++.+-.... -......+..++|+|
T Consensus 133 -----~lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~----tl~~v~k~n----~~~~s~i~~~~aW~P 198 (933)
T KOG1274|consen 133 -----VLRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSK----TLTGVDKDN----EFILSRICTRLAWHP 198 (933)
T ss_pred -----eecccCCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhh----hcccCCccc----cccccceeeeeeecC
Confidence 568999999999999999 999999999999999999877632 222211000 000135678899999
Q ss_pred c-CCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 351 N-GRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 351 ~-~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
+ |++++.+.++.|++|+... ......+........ +..+.|+|+|+|||+++.||.|.|||.++-
T Consensus 199 k~g~la~~~~d~~Vkvy~r~~-we~~f~Lr~~~~ss~-------------~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 199 KGGTLAVPPVDNTVKVYSRKG-WELQFKLRDKLSSSK-------------FSDLQWSPNGKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred CCCeEEeeccCCeEEEEccCC-ceeheeecccccccc-------------eEEEEEcCCCcEEeeeccCCcEEEEecccc
Confidence 8 5666668889999999885 666666654332211 348999999999999999999999999862
Q ss_pred CccceeecCCCCceeEEEEcCCCCcee
Q 010287 430 SAESTTLEASKNPMRRQVQTPSRPSRP 456 (513)
Q Consensus 430 ~~~~~~~~~~~~~v~~~~~~~~~~~l~ 456 (513)
.. ......|.+++|.|+...+-
T Consensus 265 --~~---~~~~~~Vc~~aw~p~~n~it 286 (933)
T KOG1274|consen 265 --ER---HEFKRAVCCEAWKPNANAIT 286 (933)
T ss_pred --hh---ccccceeEEEecCCCCCeeE
Confidence 11 23345788889988876553
No 130
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=1.3e-23 Score=191.47 Aligned_cols=280 Identities=12% Similarity=0.158 Sum_probs=218.4
Q ss_pred CcceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCc
Q 010287 88 PEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI 167 (513)
Q Consensus 88 ~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (513)
+.|.+..++.+|. ..|..++.. ++..++++|.||++++|+-..++......
T Consensus 2 ~~Y~ls~~l~gH~------------~DVr~v~~~---~~~~i~s~sRd~t~~vw~~~~~~~l~~~~-------------- 52 (745)
T KOG0301|consen 2 PQYKLSHELEGHK------------SDVRAVAVT---DGVCIISGSRDGTVKVWAKKGKQYLETHA-------------- 52 (745)
T ss_pred CcceeEEEeccCc------------cchheeEec---CCeEEeecCCCCceeeeeccCccccccee--------------
Confidence 4577888899999 789888874 34579999999999999987665433211
Q ss_pred ccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEE-EEecc-CCC
Q 010287 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINS-ISNNS-DGE 245 (513)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~-~~~ 245 (513)
..+|.+.|.+ +++-+ ++.
T Consensus 53 ------------------------------------------------------------~~~~~g~i~~~i~y~e~~~~ 72 (745)
T KOG0301|consen 53 ------------------------------------------------------------FEGPKGFIANSICYAESDKG 72 (745)
T ss_pred ------------------------------------------------------------cccCcceeeccceeccccCc
Confidence 1234444544 66665 444
Q ss_pred EEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceee
Q 010287 246 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 324 (513)
Q Consensus 246 ~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 324 (513)
.+++| .|++|.+|.+....... .+.+|...|.++....++ . +++||.|.++++|.... + ...
T Consensus 73 ~l~~g~~D~~i~v~~~~~~~P~~--------~LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~--l----~~~- 135 (745)
T KOG0301|consen 73 RLVVGGMDTTIIVFKLSQAEPLY--------TLKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGE--L----VYS- 135 (745)
T ss_pred ceEeecccceEEEEecCCCCchh--------hhhccccceeeeecCCcC-c-eEecccccceEEecchh--h----hcc-
Confidence 56666 79999999998666553 678999999999988887 4 99999999999997543 2 122
Q ss_pred ccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeE
Q 010287 325 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 403 (513)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (513)
+.+|...|+++..-|.+ .+++|+ |.+|++|. .++.++++.+|...+ ..+
T Consensus 136 -----------l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk---~~~~l~tf~gHtD~V---------------RgL 185 (745)
T KOG0301|consen 136 -----------LQGHTASVWAVASLPEN-TYVTGSADKTIKLWK---GGTLLKTFSGHTDCV---------------RGL 185 (745)
T ss_pred -----------cCCcchheeeeeecCCC-cEEeccCcceeeecc---CCchhhhhccchhhe---------------eee
Confidence 46677899999999988 555554 69999998 377889999998764 378
Q ss_pred EEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCcccc
Q 010287 404 CLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD 483 (513)
Q Consensus 404 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~ 483 (513)
++-+++. +++++.||.|++|++. + ..+..+.+|.+-++++...+++..++++++|+++++ |+.. ...+.+.
T Consensus 186 ~vl~~~~-flScsNDg~Ir~w~~~-g-e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlri---W~~~---e~~q~I~ 256 (745)
T KOG0301|consen 186 AVLDDSH-FLSCSNDGSIRLWDLD-G-EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRI---WKKD---ECVQVIT 256 (745)
T ss_pred EEecCCC-eEeecCCceEEEEecc-C-ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEE---eecC---ceEEEEe
Confidence 8887764 6789999999999995 4 456889999999999999999999999999999999 3222 2223444
Q ss_pred cc-CCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287 484 FS-MKLLHLAWHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 484 ~~-~~i~~~~~sp~~~~la~~~~~~~~i~~ 512 (513)
|. ..|.++.+-++|..++.+||+.++||.
T Consensus 257 lPttsiWsa~~L~NgDIvvg~SDG~VrVfT 286 (745)
T KOG0301|consen 257 LPTTSIWSAKVLLNGDIVVGGSDGRVRVFT 286 (745)
T ss_pred cCccceEEEEEeeCCCEEEeccCceEEEEE
Confidence 44 489999999999999999999999996
No 131
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.7e-25 Score=201.72 Aligned_cols=246 Identities=18% Similarity=0.306 Sum_probs=187.5
Q ss_pred cEEEEEEcC-CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287 37 IISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (513)
Q Consensus 37 ~V~~v~~sp-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 115 (513)
.+..|.|+. +.++|||++.+|.|.+||+..... . +....|..|+ ..+
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-----n---------------k~l~~f~EH~------------Rs~ 136 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR-----N---------------KLLTVFNEHE------------RSA 136 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCcccc-----c---------------hhhhHhhhhc------------cce
Confidence 344566764 367999999999999999864211 0 1224577788 889
Q ss_pred eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCC
Q 010287 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (513)
Q Consensus 116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 195 (513)
+++.|++... .+|++|+.||+|++||++..+-+..+
T Consensus 137 ~~ldfh~tep-~iliSGSQDg~vK~~DlR~~~S~~t~------------------------------------------- 172 (839)
T KOG0269|consen 137 NKLDFHSTEP-NILISGSQDGTVKCWDLRSKKSKSTF------------------------------------------- 172 (839)
T ss_pred eeeeeccCCc-cEEEecCCCceEEEEeeecccccccc-------------------------------------------
Confidence 9999997654 69999999999999999876533321
Q ss_pred CCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEEEEE-cCCeEEEEEcCCCcceeeecccC
Q 010287 196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVK 273 (513)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~ 273 (513)
.+....|+.+.|+| .+.+|+++ +.|.+++||++...+...
T Consensus 173 ---------------------------------~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~----- 214 (839)
T KOG0269|consen 173 ---------------------------------RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK----- 214 (839)
T ss_pred ---------------------------------cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH-----
Confidence 12335588999999 57788888 799999999997776543
Q ss_pred ccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC
Q 010287 274 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 353 (513)
Q Consensus 274 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~ 353 (513)
.+..|.++|.|+.|+|++ .+||+|+.|+.|+|||+.+++... ..++.. ..++.++.|-|..+
T Consensus 215 --k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~--~~tInT-------------iapv~rVkWRP~~~ 276 (839)
T KOG0269|consen 215 --KLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKP--KHTINT-------------IAPVGRVKWRPARS 276 (839)
T ss_pred --HhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCccc--eeEEee-------------cceeeeeeeccCcc
Confidence 678899999999999987 999999999999999997655421 222222 26899999999766
Q ss_pred E-EEEEe---CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC-CCCEEEEEeCCCcEEEEecCC
Q 010287 354 H-ILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCSE 428 (513)
Q Consensus 354 ~-l~~~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~ 428 (513)
+ |++++ |-.|+|||++.+.-+..++..|... ++.++|.. |...+.+++.||.|..-.+++
T Consensus 277 ~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~---------------vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 277 YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDS---------------VTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred chhhhhhccccceEEEEeeccccccceeeeccCcc---------------ccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 5 44443 4899999999877888888888876 34788875 556788999999887655554
Q ss_pred C
Q 010287 429 G 429 (513)
Q Consensus 429 ~ 429 (513)
.
T Consensus 342 a 342 (839)
T KOG0269|consen 342 A 342 (839)
T ss_pred c
Confidence 4
No 132
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=1.5e-23 Score=181.89 Aligned_cols=300 Identities=17% Similarity=0.255 Sum_probs=210.3
Q ss_pred cccccccEEEEEEcCCC--CEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287 31 EVQEVDIISAIEFDKSG--DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~g--~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (513)
..-|.+.|++++|+|.. +++|+|+..|+|-+||+.+.+. ...-...+..|.
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-------------------d~d~v~~f~~hs-------- 234 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-------------------DKDGVYLFTPHS-------- 234 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-------------------ccCceEEeccCC--------
Confidence 34578999999999984 6899999999999999863332 111223466777
Q ss_pred ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (513)
Q Consensus 109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 188 (513)
.+|.+|.|+|... .+++++|.||+|++-|++.+....+....
T Consensus 235 ----~~Vs~l~F~P~n~-s~i~ssSyDGtiR~~D~~~~i~e~v~s~~--------------------------------- 276 (498)
T KOG4328|consen 235 ----GPVSGLKFSPANT-SQIYSSSYDGTIRLQDFEGNISEEVLSLD--------------------------------- 276 (498)
T ss_pred ----ccccceEecCCCh-hheeeeccCceeeeeeecchhhHHHhhcC---------------------------------
Confidence 8899999998544 68999999999999999886533322111
Q ss_pred ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287 189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 267 (513)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~ 267 (513)
.....+..+.|+.+...++.+ .=|...+||+++.+...
T Consensus 277 -----------------------------------------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~ 315 (498)
T KOG4328|consen 277 -----------------------------------------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY 315 (498)
T ss_pred -----------------------------------------ccceeeeeccccCCCccEEEeecccceEEEEeecCCccc
Confidence 011225567788777777776 56699999999888755
Q ss_pred eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287 268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 347 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 347 (513)
. .+.-|...|++++++|..+.+|++++.|++.+|||+|.-..... +......|...|.+..
T Consensus 316 ~-------~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s------------p~lst~~HrrsV~sAy 376 (498)
T KOG4328|consen 316 E-------NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS------------PFLSTLPHRRSVNSAY 376 (498)
T ss_pred h-------hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC------------cceecccccceeeeeE
Confidence 4 44567889999999999989999999999999999987443211 0111345778999999
Q ss_pred EeecCCEEEE-EeCCeEEEEEcc---CCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEE
Q 010287 348 FARNGRHILS-RDYMTLKLWDIN---MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 423 (513)
Q Consensus 348 ~sp~~~~l~~-~~~~~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 423 (513)
|||.+-.|++ +.|..|+|||.. ....+..++. |..... .....+...|.|+..++++|..-..|-|
T Consensus 377 FSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~---------RwlT~fKA~W~P~~~li~vg~~~r~IDv 446 (498)
T KOG4328|consen 377 FSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTG---------RWLTPFKAAWDPDYNLIVVGRYPRPIDV 446 (498)
T ss_pred EcCCCCceEeeccCCceEEeecccccccCCccceee-ccCccc---------ccccchhheeCCCccEEEEeccCcceeE
Confidence 9996655666 557999999984 1133333333 222111 1112347899999999999999999999
Q ss_pred EecCCCCccceeecC-CCCceeE-EEEcCCCCceeee-cCCCeEEE
Q 010287 424 FGCSEGSAESTTLEA-SKNPMRR-QVQTPSRPSRPLG-SLSGVVRR 466 (513)
Q Consensus 424 wd~~~~~~~~~~~~~-~~~~v~~-~~~~~~~~~l~~~-~~d~~i~~ 466 (513)
+|.+.+ +....+.. ....|.+ ..++|-+..+++| +..|.|.+
T Consensus 447 ~~~~~~-q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~v 491 (498)
T KOG4328|consen 447 FDGNGG-QMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYV 491 (498)
T ss_pred EcCCCC-EEeeeccCccccccccceeecccccceeccCCccceEEE
Confidence 998866 32233222 2223433 4788988855555 55677766
No 133
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=4.1e-24 Score=187.40 Aligned_cols=285 Identities=12% Similarity=0.196 Sum_probs=214.0
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
..+.|..-|.++.+|...+++.||+.. -|+|||+...... . |. ..+. .+
T Consensus 414 ~tL~HGEvVcAvtIS~~trhVyTgGkg-cVKVWdis~pg~k----~------------Pv----sqLd----------cl 462 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISQPGNK----S------------PV----SQLD----------CL 462 (705)
T ss_pred hhhccCcEEEEEEecCCcceeEecCCC-eEEEeeccCCCCC----C------------cc----cccc----------cc
Confidence 466799999999999999999999864 6999998754321 0 10 1111 11
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
.-..-|.+...+| |++.|++|+.-.++.|||+..-......++
T Consensus 463 ~rdnyiRSckL~p--dgrtLivGGeastlsiWDLAapTprikael----------------------------------- 505 (705)
T KOG0639|consen 463 NRDNYIRSCKLLP--DGRTLIVGGEASTLSIWDLAAPTPRIKAEL----------------------------------- 505 (705)
T ss_pred CcccceeeeEecC--CCceEEeccccceeeeeeccCCCcchhhhc-----------------------------------
Confidence 1125577777854 888999999999999999976532111110
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~ 268 (513)
....-...+++.+||.+..+++ .||.|.|||+...... .
T Consensus 506 ---------------------------------------tssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V-r 545 (705)
T KOG0639|consen 506 ---------------------------------------TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV-R 545 (705)
T ss_pred ---------------------------------------CCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee-e
Confidence 1111235678899999998888 8999999999854433 2
Q ss_pred ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 348 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 348 (513)
.+++|.+.+.||..+++| ..|-+|+-|.+||.||++.+....++ ...+.|.++.+
T Consensus 546 -------qfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlqqh-----------------dF~SQIfSLg~ 600 (705)
T KOG0639|consen 546 -------QFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQQH-----------------DFSSQIFSLGY 600 (705)
T ss_pred -------cccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhhhh-----------------hhhhhheeccc
Confidence 679999999999999999 99999999999999999998764321 12267999999
Q ss_pred eecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287 349 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 427 (513)
Q Consensus 349 sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 427 (513)
+|++.+++.|-. +.+.|-... +.....+..|+.. |.++.|.+-|+++++.+.|+.+..|...
T Consensus 601 cP~~dWlavGMens~vevlh~s--kp~kyqlhlheSc---------------VLSlKFa~cGkwfvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 601 CPTGDWLAVGMENSNVEVLHTS--KPEKYQLHLHESC---------------VLSLKFAYCGKWFVSTGKDNLLNAWRTP 663 (705)
T ss_pred CCCccceeeecccCcEEEEecC--CccceeecccccE---------------EEEEEecccCceeeecCchhhhhhccCc
Confidence 999999999987 888887765 3333344444443 5699999999999999999999999988
Q ss_pred CCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
-+..+.+. ....+|.++.++.+.+++++|+-|..-.+
T Consensus 664 yGasiFqs--kE~SsVlsCDIS~ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 664 YGASIFQS--KESSSVLSCDISFDDKYIVTGSGDKKATV 700 (705)
T ss_pred cccceeec--cccCcceeeeeccCceEEEecCCCcceEE
Confidence 77444322 23567999999999999999998866554
No 134
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=8.7e-22 Score=179.24 Aligned_cols=415 Identities=13% Similarity=0.134 Sum_probs=269.1
Q ss_pred cccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcce
Q 010287 12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (513)
Q Consensus 12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (513)
....+|++..... .. ..-.-.+.|.+++.+|.+..++.|+.||.+..++...+.. .
T Consensus 90 g~i~EwDl~~lk~--~~-~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I---------------------~ 145 (691)
T KOG2048|consen 90 GSITEWDLHTLKQ--KY-NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI---------------------T 145 (691)
T ss_pred ceEEEEecccCce--eE-EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE---------------------E
Confidence 3456677765311 11 2223468999999999999999999999777777655443 2
Q ss_pred EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (513)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (513)
+...|.-.+ ++|.++.|.| ++..+++|+.||.|++||+..+....+...+.....- + ...
T Consensus 146 ~~r~l~rq~------------sRvLslsw~~--~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k---~---~~~ 205 (691)
T KOG2048|consen 146 YKRSLMRQK------------SRVLSLSWNP--TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSK---R---EPT 205 (691)
T ss_pred EEeeccccc------------ceEEEEEecC--CccEEEecccCceEEEEEcCCCceEEEeeeccccccc---C---Cce
Confidence 444444444 8899999955 7778999999999999999998766644433321000 0 000
Q ss_pred ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-
Q 010287 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 250 (513)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~- 250 (513)
..+ ++.+..++. .+++++.|.+++||-..+...+. ...|...|.+++..+++.+++++
T Consensus 206 iVW-Sv~~Lrd~t-------------I~sgDS~G~V~FWd~~~gTLiqS-------~~~h~adVl~Lav~~~~d~vfsaG 264 (691)
T KOG2048|consen 206 IVW-SVLFLRDST-------------IASGDSAGTVTFWDSIFGTLIQS-------HSCHDADVLALAVADNEDRVFSAG 264 (691)
T ss_pred EEE-EEEEeecCc-------------EEEecCCceEEEEcccCcchhhh-------hhhhhcceeEEEEcCCCCeEEEcc
Confidence 111 223333443 38889999999999877554332 25788899999999998888887
Q ss_pred cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccc-------------
Q 010287 251 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC------------- 317 (513)
Q Consensus 251 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~------------- 317 (513)
-|+.|..+...+....+... .....|...|.+++..++ .+++|+.|..+.+--.+.-...
T Consensus 265 vd~~ii~~~~~~~~~~wv~~----~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~ 337 (691)
T KOG2048|consen 265 VDPKIIQYSLTTNKSEWVIN----SRRDLHAHDVRSMAVIEN---ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDR 337 (691)
T ss_pred CCCceEEEEecCCccceeee----ccccCCcccceeeeeecc---eEEecceeeEEEEccccccCchhhhccccccccce
Confidence 69999999888765532211 134668888999998875 6888999988877544431100
Q ss_pred ------cccceeecccc---------------CCC-CccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCe
Q 010287 318 ------DTHSKLFEEQE---------------APG-TRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPV 375 (513)
Q Consensus 318 ------~~~~~~~~~~~---------------~~~-~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~ 375 (513)
.+....+..+. ... .......-...|.+.+.||+|++|+.+.-..++||.+.... .+
T Consensus 338 v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~-~v 416 (691)
T KOG2048|consen 338 VSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP-NV 416 (691)
T ss_pred eecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCc-ce
Confidence 00000110000 000 00111122356899999999999999888889999998533 44
Q ss_pred eeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCCCccc-eee--cCCCCceeEEEEcCC
Q 010287 376 ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAES-TTL--EASKNPMRRQVQTPS 451 (513)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~-~~~--~~~~~~v~~~~~~~~ 451 (513)
........... ..+...+.|+-|++.++..+ .+..+.++++++..... ..+ ++-..++..+..+++
T Consensus 417 k~~~v~~~~~~----------~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ssd 486 (691)
T KOG2048|consen 417 KVINVDDVPLA----------LLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSD 486 (691)
T ss_pred eEEEeccchhh----------hccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCC
Confidence 33333222111 11244788998988887777 77888888887653221 111 134567899999999
Q ss_pred CCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCC-CCEEEEE-cCCcEEEEe
Q 010287 452 RPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPS-ENSIACA-ASNSLYMYY 512 (513)
Q Consensus 452 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-~~~la~~-~~~~~~i~~ 512 (513)
|+|+|..+.+|.|.++...... ...........|++++++|. .+.|+++ +++.++-|+
T Consensus 487 G~yiaa~~t~g~I~v~nl~~~~---~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efd 546 (691)
T KOG2048|consen 487 GNYIAAISTRGQIFVYNLETLE---SHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFD 546 (691)
T ss_pred CCEEEEEeccceEEEEEcccce---eecchhccCcceeeeeccccccCcEEEEecCCeEEEEe
Confidence 9999999999999993222221 11111123578999999955 5666655 477777664
No 135
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=6.3e-24 Score=186.28 Aligned_cols=234 Identities=14% Similarity=0.168 Sum_probs=180.6
Q ss_pred CCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287 233 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 311 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~ 311 (513)
..|+++...|||+.|++| .-.++.|||+......++. .+..-.-....++.+||. ++.++++.||.|.|||+
T Consensus 466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprika------eltssapaCyALa~spDa-kvcFsccsdGnI~vwDL 538 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKA------ELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDL 538 (705)
T ss_pred cceeeeEecCCCceEEeccccceeeeeeccCCCcchhh------hcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEc
Confidence 348889999999999998 6889999999876654331 233333445678899998 99999999999999999
Q ss_pred CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeeccccccccccc
Q 010287 312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCD 390 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 390 (513)
.+..+ ++. +.+|...+.||.+++||..|.+|+ |.+|+.||++. ++.+........
T Consensus 539 hnq~~----Vrq------------fqGhtDGascIdis~dGtklWTGGlDntvRcWDlre-grqlqqhdF~SQ------- 594 (705)
T KOG0639|consen 539 HNQTL----VRQ------------FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE-GRQLQQHDFSSQ------- 594 (705)
T ss_pred cccee----eec------------ccCCCCCceeEEecCCCceeecCCCccceeehhhhh-hhhhhhhhhhhh-------
Confidence 98766 444 455667899999999999999987 69999999996 444433222111
Q ss_pred ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCC
Q 010287 391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA 470 (513)
Q Consensus 391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~ 470 (513)
|+++...|++.+|+.|-.++.+.|-... +.....+..|...|.++.|.+-|+++++.+.|..+.. |
T Consensus 595 ---------IfSLg~cP~~dWlavGMens~vevlh~s--kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLna---w 660 (705)
T KOG0639|consen 595 ---------IFSLGYCPTGDWLAVGMENSNVEVLHTS--KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA---W 660 (705)
T ss_pred ---------heecccCCCccceeeecccCcEEEEecC--CccceeecccccEEEEEEecccCceeeecCchhhhhh---c
Confidence 5689999999999999999998887765 4455778889999999999999999999999988776 3
Q ss_pred CCCccccCCccccccCCeeEEEEeCCCCEEEEEcCC-cEEEEe
Q 010287 471 DNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN-SLYMYY 512 (513)
Q Consensus 471 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~-~~~i~~ 512 (513)
+..-.....+. .-++.|+++..|-|.++|++|+.+ ..-+|.
T Consensus 661 rtPyGasiFqs-kE~SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 661 RTPYGASIFQS-KESSSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred cCccccceeec-cccCcceeeeeccCceEEEecCCCcceEEEE
Confidence 32211111111 126789999999999999999955 666653
No 136
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.4e-24 Score=198.51 Aligned_cols=236 Identities=17% Similarity=0.230 Sum_probs=182.4
Q ss_pred eEEEEecc-CCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287 235 INSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 312 (513)
Q Consensus 235 v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 312 (513)
+..+.|+. +.++|+++ ..|.|.+||+........+ ..+..|...++++.|++..+++|++|+.||.|++||+|
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l-----~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR 164 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLL-----TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR 164 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhh-----hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee
Confidence 45677875 57789998 6999999999863221111 15688999999999999999999999999999999999
Q ss_pred CcccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccccccc
Q 010287 313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 390 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 390 (513)
..+.. .++. +....|+.|.|+| .+.+++++.| |.+++||++.+.++...+..|.+.
T Consensus 165 ~~~S~----~t~~------------~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~Gp------ 222 (839)
T KOG0269|consen 165 SKKSK----STFR------------SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGP------ 222 (839)
T ss_pred ccccc----cccc------------ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCc------
Confidence 86642 2222 2336899999999 6678888888 999999999888888999999987
Q ss_pred ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCc-eeeecC--CCeEEEe
Q 010287 391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS-RPLGSL--SGVVRRV 467 (513)
Q Consensus 391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~--d~~i~~~ 467 (513)
|.++.|+|++.+||||+.|+.|+|||..+........-....|+.++.|.|...+ ||++++ |-.|++
T Consensus 223 ---------V~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~V- 292 (839)
T KOG0269|consen 223 ---------VLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHV- 292 (839)
T ss_pred ---------eEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEE-
Confidence 5699999999999999999999999998664433333345679999999999875 666654 677888
Q ss_pred cCCCCCccccCC-ccccccCCeeEEEEeCC-CCEEEEEcCCcEE
Q 010287 468 KGADNSALDANG-NAFDFSMKLLHLAWHPS-ENSIACAASNSLY 509 (513)
Q Consensus 468 ~~~~~~~~~~~~-~~~~~~~~i~~~~~sp~-~~~la~~~~~~~~ 509 (513)
|++.+..+.. ...+|...++.++|-.. -..|.+++.++++
T Consensus 293 --WDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 293 --WDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred --EeeccccccceeeeccCccccceeccCCCceeeEeecCccHH
Confidence 5555433333 24478999999999873 3445577766543
No 137
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.1e-22 Score=166.13 Aligned_cols=285 Identities=13% Similarity=0.227 Sum_probs=188.0
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
-+.+|.+-|+|+.|++.|+.+|+++.|++|+|||.+.... .+......+.|.
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-------------------~W~~Ts~Wrah~--------- 59 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-------------------TWSCTSSWRAHD--------- 59 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-------------------ceEEeeeEEecC---------
Confidence 4568999999999999999999999999999999754432 455667788898
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
+.|..|.|.+..-|+.+++++.|+++.||.-........ |
T Consensus 60 ---~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~-------------------------------~------ 99 (361)
T KOG2445|consen 60 ---GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH-------------------------------G------ 99 (361)
T ss_pred ---CcEEEEEecCccccceEEEEecCCceeeeeecccccccc-------------------------------c------
Confidence 899999998877799999999999999998642221110 0
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC--CCEEEEE-cCCeEEEEEcCCCcce
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 266 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~vwd~~~~~~~ 266 (513)
+ .-.+++.+......|+.+.|.|. |-.++++ .||.++||+.-....+
T Consensus 100 ------------------~------------~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL 149 (361)
T KOG2445|consen 100 ------------------R------------RWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL 149 (361)
T ss_pred ------------------c------------eeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc
Confidence 0 00122224455677999999994 6677877 7999999987543221
Q ss_pred ee--ec-ccC--ccccccccCCeEEEEEeCCC--CeEEEEEeCC-----CcEEEEEcCCcccccccceeeccccCCCCcc
Q 010287 267 FN--IV-DVK--PANMEDLTEVITSAEFHPTH--CNMLAYSSSK-----GSIRLIDMRQSALCDTHSKLFEEQEAPGTRS 334 (513)
Q Consensus 267 ~~--~~-~~~--~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 334 (513)
.+ +. +++ +.....+..+..|+.|+|.. +.+|+.|+.+ +.++||....+......+..
T Consensus 150 s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~----------- 218 (361)
T KOG2445|consen 150 SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAE----------- 218 (361)
T ss_pred ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehh-----------
Confidence 11 00 000 11223456678899998742 2467777766 47888876543311111111
Q ss_pred ccccccccEEEEEEeec----CCEEEEEeC-CeEEEEEccCCCCCeeeee---ccc---ccccccccccccCCccceeeE
Q 010287 335 FFTEIIASISDIKFARN----GRHILSRDY-MTLKLWDINMDSGPVATFQ---VHE---HLRPKLCDLYENDSIFDKFEC 403 (513)
Q Consensus 335 ~~~~~~~~v~~i~~sp~----~~~l~~~~~-~~v~iwd~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~v~~~ 403 (513)
+.+|..+|++++|.|+ .+.|++++. | |+||.++.....+..-. ... -.+..+..+...+ -.|+.+
T Consensus 219 -L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~--~~VWrv 294 (361)
T KOG2445|consen 219 -LPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHN--GEVWRV 294 (361)
T ss_pred -cCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCC--CceEEE
Confidence 3467789999999994 356777764 7 99999973111110000 000 0001111111111 026799
Q ss_pred EEeCCCCEEEEEeCCCcEEEEecC
Q 010287 404 CLSGDGGRVATGSYSNLFRVFGCS 427 (513)
Q Consensus 404 ~~s~~~~~l~~~~~dg~i~vwd~~ 427 (513)
.|+-.|..|++.+.||.|++|...
T Consensus 295 ~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 295 RWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEeeeeeEEeecCCCceeeehhhh
Confidence 999999999999999999999754
No 138
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=4.3e-23 Score=174.75 Aligned_cols=219 Identities=17% Similarity=0.225 Sum_probs=160.2
Q ss_pred eccccCCeEEEEeccC-CCEEEEEc-CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287 228 AHAHDYHINSISNNSD-GETFISAD-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 305 (513)
Q Consensus 228 ~~~h~~~v~~~~~~~~-~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 305 (513)
..+|...=.+++|||- ...|++|+ -+.|++|...++.-.. .+..+.+|+..|..++|+|....+|++|+.||+
T Consensus 207 ~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v-----d~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs 281 (440)
T KOG0302|consen 207 FNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV-----DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS 281 (440)
T ss_pred ecccCccceeeecccccccccccCccccceEeeeeccCceee-----cCccccccccchhhhccCCccCceEEeeecCce
Confidence 3688888899999993 33477774 7889999988754322 234677899999999999998899999999999
Q ss_pred EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccC--CCCCeeeeeccc
Q 010287 306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM--DSGPVATFQVHE 382 (513)
Q Consensus 306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~--~~~~~~~~~~~~ 382 (513)
|+|||+|.+..... . +.+.|.+.|+-|+|+.+-.+|++|+| |+++|||++. .++++..++.|.
T Consensus 282 IrIWDiRs~~~~~~--~------------~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk 347 (440)
T KOG0302|consen 282 IRIWDIRSGPKKAA--V------------STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK 347 (440)
T ss_pred EEEEEecCCCccce--e------------EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEecc
Confidence 99999998743111 1 12456688999999998889999987 9999999985 357888999898
Q ss_pred ccccccccccccCCccceeeEEEeCCC-CEEEEEeCCCcEEEEecCCCCccce----eecCCCCceeEEEEcCCCCceee
Q 010287 383 HLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAEST----TLEASKNPMRRQVQTPSRPSRPL 457 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~ 457 (513)
.+ |+++.|+|.. ..|++++.|.+|.+||+........ ..++-..-...+.|-..
T Consensus 348 ~p---------------ItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq------ 406 (440)
T KOG0302|consen 348 AP---------------ITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ------ 406 (440)
T ss_pred CC---------------eeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEec------
Confidence 77 6699999954 5778888999999999975422100 00000000011111111
Q ss_pred ecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCC-EEEEEcCCcEEEEe
Q 010287 458 GSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN-SIACAASNSLYMYY 512 (513)
Q Consensus 458 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~-~la~~~~~~~~i~~ 512 (513)
-...|..+.||+.-. +|++.+.+++.||.
T Consensus 407 --------------------------GQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 407 --------------------------GQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred --------------------------chhHhhhheeccCCCCeEEEecccceeEEE
Confidence 045678899999954 56677799999986
No 139
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=4.5e-22 Score=179.74 Aligned_cols=307 Identities=17% Similarity=0.220 Sum_probs=207.3
Q ss_pred cccccEEE--EEEcCC---CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccc
Q 010287 33 QEVDIISA--IEFDKS---GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (513)
Q Consensus 33 ~h~~~V~~--v~~sp~---g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (513)
.|.-++.- ..|++. ..+||.+..+|.|.++|....... ++-.-...+..|.
T Consensus 45 ~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr-----------------~ee~~lk~~~aH~------- 100 (720)
T KOG0321|consen 45 NDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR-----------------LEERQLKKPLAHK------- 100 (720)
T ss_pred cCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcc-----------------hhhhhhccccccc-------
Confidence 34445554 567664 468999999999999997644321 0111123456777
Q ss_pred cccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (513)
Q Consensus 108 ~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 187 (513)
.+|..+.|.| ....|++++.|.++++||+++..+....
T Consensus 101 -----nAifDl~wap--ge~~lVsasGDsT~r~Wdvk~s~l~G~~----------------------------------- 138 (720)
T KOG0321|consen 101 -----NAIFDLKWAP--GESLLVSASGDSTIRPWDVKTSRLVGGR----------------------------------- 138 (720)
T ss_pred -----ceeEeeccCC--CceeEEEccCCceeeeeeeccceeecce-----------------------------------
Confidence 8899999977 4568899999999999999988754321
Q ss_pred cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC-CEEEEE-cCCeEEEEEcCCCcc
Q 010287 188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQ 265 (513)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~vwd~~~~~~ 265 (513)
...+|...|.++||.+.. ..|++| .||.|.|||++....
T Consensus 139 ---------------------------------------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~ 179 (720)
T KOG0321|consen 139 ---------------------------------------LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGV 179 (720)
T ss_pred ---------------------------------------eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccch
Confidence 135899999999999954 556677 699999999985431
Q ss_pred e-eeec-------------ccCc-----cccccccCCeEE---EEEeCCCCeEEEEEeC-CCcEEEEEcCCcccccccce
Q 010287 266 S-FNIV-------------DVKP-----ANMEDLTEVITS---AEFHPTHCNMLAYSSS-KGSIRLIDMRQSALCDTHSK 322 (513)
Q Consensus 266 ~-~~~~-------------~~~~-----~~~~~~~~~i~~---~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~ 322 (513)
. .+.. ..+| ..-..+...|.+ +.+..|+ ..|++++. |+.|+|||++......+
T Consensus 180 d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r--- 255 (720)
T KOG0321|consen 180 DALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYR--- 255 (720)
T ss_pred hhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccc---
Confidence 0 0000 0111 111223344444 4455566 78888888 99999999998653211
Q ss_pred eeccccCCCCccccccc---cccEEEEEEeecCCEEEE-EeCCeEEEEEccCCC-CCeeeeecccccccccccccccCCc
Q 010287 323 LFEEQEAPGTRSFFTEI---IASISDIKFARNGRHILS-RDYMTLKLWDINMDS-GPVATFQVHEHLRPKLCDLYENDSI 397 (513)
Q Consensus 323 ~~~~~~~~~~~~~~~~~---~~~v~~i~~sp~~~~l~~-~~~~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (513)
.+. .....+..| .-.+.++.....|.+|++ +.|+.|++|++.... .++..+.++.... +
T Consensus 256 -~ep----~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~s-----------f 319 (720)
T KOG0321|consen 256 -QEP----RGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSS-----------F 319 (720)
T ss_pred -cCC----CcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccce-----------e
Confidence 000 000001111 235677777777777766 678999999998522 2334444333211 1
Q ss_pred cceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCC-ceeeecCCCeEEE
Q 010287 398 FDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR 466 (513)
Q Consensus 398 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~ 466 (513)
+ ..-..+||+.+|++|+.|...++|.+.+.......+.+|.-.|..++|.|... -+++++.|-.+++
T Consensus 320 ~--vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~ki 387 (720)
T KOG0321|consen 320 Y--VKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKI 387 (720)
T ss_pred e--eeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEE
Confidence 1 14567999999999999999999999988667788999999999999977543 4667799999988
No 140
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=6e-22 Score=177.64 Aligned_cols=322 Identities=13% Similarity=0.174 Sum_probs=213.4
Q ss_pred EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (513)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (513)
+...+.||+ +.|.+|...| .|..|++|+.||+|+||.+.++.|+....+..
T Consensus 392 ~~lvyrGHt------------g~Vr~iSvdp--~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~--------------- 442 (733)
T KOG0650|consen 392 CALVYRGHT------------GLVRSISVDP--SGEWLASGSDDGTVRIWEIATGRCVRTVQFDS--------------- 442 (733)
T ss_pred eeeeEeccC------------CeEEEEEecC--CcceeeecCCCCcEEEEEeecceEEEEEeecc---------------
Confidence 344578888 8999999955 77899999999999999999999887655432
Q ss_pred ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-
Q 010287 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 250 (513)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~- 250 (513)
...+++|.|.+..-.+ +...... +.+.+-. .+ ..+..-+....|+++
T Consensus 443 -~I~~vaw~P~~~~~vL----------AvA~~~~-~~ivnp~---------------~G-----~~~e~~~t~ell~~~~ 490 (733)
T KOG0650|consen 443 -EIRSVAWNPLSDLCVL----------AVAVGEC-VLIVNPI---------------FG-----DRLEVGPTKELLASAP 490 (733)
T ss_pred -eeEEEEecCCCCceeE----------EEEecCc-eEEeCcc---------------cc-----chhhhcchhhhhhcCC
Confidence 1224445444432100 0000000 0000000 00 000011122233332
Q ss_pred ----cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC---CcEEEEEcCCccccccccee
Q 010287 251 ----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKL 323 (513)
Q Consensus 251 ----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~ 323 (513)
.++.+..|.-...++...-+ ...-.|...|..+.|+..| .+|++..-+ ..|.|+++...... ..
T Consensus 491 ~~~~p~~~~~~W~~~~~~e~~~~v----~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQLSK~~sQ----~P 561 (733)
T KOG0650|consen 491 NESEPDAAVVTWSRASLDELEKGV----CIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQLSKRKSQ----SP 561 (733)
T ss_pred CccCCcccceeechhhhhhhccce----EEEEecCCccceeeeecCC-ceEEEeccCCCcceEEEEeccccccc----Cc
Confidence 14555666543221111000 0123477889999999999 888887664 47888888665431 11
Q ss_pred eccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeE
Q 010287 324 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 403 (513)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (513)
|....+.|.++.|+|...+|++++...|+|||+.. +..++.+...... |..+
T Consensus 562 ------------F~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~k-qelvKkL~tg~kw---------------iS~m 613 (733)
T KOG0650|consen 562 ------------FRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSK-QELVKKLLTGSKW---------------ISSM 613 (733)
T ss_pred ------------hhhcCCceeEEEecCCCceEEEEeccceEEEehhH-HHHHHHHhcCCee---------------eeee
Confidence 23334789999999999999999999999999985 6666555444333 3489
Q ss_pred EEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCC---ccccCC-
Q 010287 404 CLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNS---ALDANG- 479 (513)
Q Consensus 404 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~---~~~~~~- 479 (513)
+.+|.|..|+.|+.|+.+..||+.-..+..+++..|...++.+++++.-.++++|+.||.+.+..+.-.. ...+.+
T Consensus 614 sihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVP 693 (733)
T KOG0650|consen 614 SIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVP 693 (733)
T ss_pred eecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEe
Confidence 9999999999999999999999998877789999999999999999999999999999999982222111 001111
Q ss_pred --ccccccCC----eeEEEEeCCCCEEEEEc-CCcEEEE
Q 010287 480 --NAFDFSMK----LLHLAWHPSENSIACAA-SNSLYMY 511 (513)
Q Consensus 480 --~~~~~~~~----i~~~~~sp~~~~la~~~-~~~~~i~ 511 (513)
...+|... |.++.|||...+|.+++ ++.+.+|
T Consensus 694 lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 694 LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 12245544 99999999999999777 5578877
No 141
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.7e-22 Score=173.87 Aligned_cols=235 Identities=17% Similarity=0.240 Sum_probs=176.3
Q ss_pred cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccc
Q 010287 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (513)
Q Consensus 33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (513)
--.++|+|++-+|+|.+|+.|+..|.|++|.+.++... ..+.+|-
T Consensus 79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL-----------------------~v~~aHY------------ 123 (476)
T KOG0646|consen 79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILL-----------------------NVLSAHY------------ 123 (476)
T ss_pred ccccceeeeecCCCceEEEeecccCcEEEEEeccccHH-----------------------HHHHhhc------------
Confidence 34688999999999999999999999999999998853 5568888
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
..|+++.| +.|+.+|++|+.||.|.+|.+..--
T Consensus 124 Q~ITcL~f--s~dgs~iiTgskDg~V~vW~l~~lv--------------------------------------------- 156 (476)
T KOG0646|consen 124 QSITCLKF--SDDGSHIITGSKDGAVLVWLLTDLV--------------------------------------------- 156 (476)
T ss_pred cceeEEEE--eCCCcEEEecCCCccEEEEEEEeec---------------------------------------------
Confidence 88999999 6799999999999999999985421
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC--CCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFNI 269 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~vwd~~~~~~~~~~ 269 (513)
....+.. ..+... +..|.-+|+++...+. ..+++++ .|.++++||+..+..+..+
T Consensus 157 -------~a~~~~~--------------~~p~~~-f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti 214 (476)
T KOG0646|consen 157 -------SADNDHS--------------VKPLHI-FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI 214 (476)
T ss_pred -------ccccCCC--------------ccceee-eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence 0001100 011111 4788899999887664 4567776 7999999999988766543
Q ss_pred cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccc--cEEEEE
Q 010287 270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA--SISDIK 347 (513)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~i~ 347 (513)
. ....+.+++.+|.+ ..++.|+.+|.|.+.++.........+..-..+........+.+|.+ .|+|++
T Consensus 215 ~---------fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLa 284 (476)
T KOG0646|consen 215 T---------FPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLA 284 (476)
T ss_pred e---------cCCcceeEEEcccc-cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEE
Confidence 2 35679999999998 99999999999999887653321110111111122223344677877 999999
Q ss_pred EeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccc
Q 010287 348 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHE 382 (513)
Q Consensus 348 ~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~ 382 (513)
++-||.+|++|+. |.|.|||+.+ .++++++....
T Consensus 285 is~DgtlLlSGd~dg~VcvWdi~S-~Q~iRtl~~~k 319 (476)
T KOG0646|consen 285 ISTDGTLLLSGDEDGKVCVWDIYS-KQCIRTLQTSK 319 (476)
T ss_pred EecCccEEEeeCCCCCEEEEecch-HHHHHHHhhhc
Confidence 9999999999986 9999999996 77777775433
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=5.7e-24 Score=194.57 Aligned_cols=194 Identities=18% Similarity=0.263 Sum_probs=164.7
Q ss_pred eccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287 228 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 306 (513)
Q Consensus 228 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 306 (513)
+.+|..+|.++.|+++..+|++| .+|+|++||++..+.. +++.+|...+.++.|+|-+ .++++++.|..+
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v--------rtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~ 136 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV--------RTLTGHLLNITSVDFHPYG-EFFASGSTDTDL 136 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh--------hhhhccccCcceeeeccce-EEeccccccccc
Confidence 36899999999999999999998 7999999999966543 2678999999999999999 899999999999
Q ss_pred EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccc
Q 010287 307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR 385 (513)
Q Consensus 307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~ 385 (513)
++||.+...+ .+. +.+|...+..+.|+|+|++++.|++ ..++|||... ++.+..|..|+..+
T Consensus 137 ~iwD~Rk~Gc----~~~------------~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a-gk~~~ef~~~e~~v 199 (825)
T KOG0267|consen 137 KIWDIRKKGC----SHT------------YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA-GKLSKEFKSHEGKV 199 (825)
T ss_pred eehhhhccCc----eee------------ecCCcceeEEEeecCCCceeeccCCcceeeeecccc-cccccccccccccc
Confidence 9999985544 233 3445678999999999999999876 9999999986 99999999888763
Q ss_pred cccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCe
Q 010287 386 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 463 (513)
Q Consensus 386 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 463 (513)
..+.|+|..-.+++|+.|+++++||+++. ..+...+.....|.+..|+|++..+++|.....
T Consensus 200 ---------------~sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 200 ---------------QSLEFHPLEVLLAPGSSDRTVRFWDLETF-EVISSGKPETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred ---------------cccccCchhhhhccCCCCceeeeecccee-EEeeccCCccCCceeeeecCCceeeecCchhhh
Confidence 37889999989999999999999999976 333445555778999999999999998865543
No 143
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=4.1e-22 Score=168.89 Aligned_cols=269 Identities=17% Similarity=0.271 Sum_probs=184.3
Q ss_pred ccccccccEEEEEEcCCC--CEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccc
Q 010287 30 EEVQEVDIISAIEFDKSG--DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g--~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (513)
..+.|.+.|+-+.-++-| .+.|+=+..|.|.||++..... .+......+.. .+.+....+.+|.
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~------~l~~~~~~~~~-s~~~Pl~t~~ghk------- 211 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN------ALSEPGLEVKD-SEFRPLFTFNGHK------- 211 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhh------hhcCccccccc-cccCceEEecccC-------
Confidence 345788888888887765 4667777899999999754321 11111111111 2334445567777
Q ss_pred cccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (513)
Q Consensus 108 ~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 187 (513)
..=++|+|+|...| .|++|..-+.|++|...++....-.
T Consensus 212 -----~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~vd~----------------------------------- 250 (440)
T KOG0302|consen 212 -----GEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWKVDQ----------------------------------- 250 (440)
T ss_pred -----ccceeeeccccccc-ccccCccccceEeeeeccCceeecC-----------------------------------
Confidence 66899999986554 6889988889999999887532210
Q ss_pred cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CCEEEEE-cCCeEEEEEcCCCcc
Q 010287 188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQ 265 (513)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~vwd~~~~~~ 265 (513)
.-+.+|...|-.++|+|. ...|++| -||+|+|||++.+.+
T Consensus 251 --------------------------------------~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 251 --------------------------------------RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK 292 (440)
T ss_pred --------------------------------------ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc
Confidence 013579999999999996 4566777 599999999997754
Q ss_pred eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287 266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 345 (513)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 345 (513)
...+ ..+.|.+.|+-+.|+... .+|++|+.||+++|||+|+-+.. +++.. ++-|+.+|++
T Consensus 293 ~~~~------~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~-~pVA~------------fk~Hk~pIts 352 (440)
T KOG0302|consen 293 KAAV------STKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSG-QPVAT------------FKYHKAPITS 352 (440)
T ss_pred ccee------EeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCC-Cccee------------EEeccCCeeE
Confidence 3332 347799999999999998 59999999999999999875432 22223 5567789999
Q ss_pred EEEeecC-CEEE-EEeCCeEEEEEccCCCC---------------CeeeeecccccccccccccccCCccceeeEEEeCC
Q 010287 346 IKFARNG-RHIL-SRDYMTLKLWDINMDSG---------------PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 408 (513)
Q Consensus 346 i~~sp~~-~~l~-~~~~~~v~iwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 408 (513)
|.|+|.. ..|+ +|.|..|.+||+..... +.+.+..|.+.. .+-.+.|+++
T Consensus 353 ieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQk-------------e~KevhWH~Q 419 (440)
T KOG0302|consen 353 IEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQK-------------EVKEVHWHRQ 419 (440)
T ss_pred EEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchh-------------HhhhheeccC
Confidence 9999943 3444 45679999999875221 122333343321 1226788876
Q ss_pred C-CEEEEEeCCCcEEEEe
Q 010287 409 G-GRVATGSYSNLFRVFG 425 (513)
Q Consensus 409 ~-~~l~~~~~dg~i~vwd 425 (513)
- .+|++.+.|| +.||.
T Consensus 420 iPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 420 IPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred CCCeEEEecccc-eeEEE
Confidence 4 4677777787 45554
No 144
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=8.7e-24 Score=193.38 Aligned_cols=235 Identities=21% Similarity=0.332 Sum_probs=199.1
Q ss_pred ccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEE
Q 010287 229 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 307 (513)
Q Consensus 229 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 307 (513)
..|...+.++..-..++.+++| .|..+-+|.+....... .+.+|..+|.++.|++.. .+|++|+.+|+|+
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~--------S~~~hespIeSl~f~~~E-~LlaagsasgtiK 95 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT--------SLTGHESPIESLTFDTSE-RLLAAGSASGTIK 95 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh--------eeeccCCcceeeecCcch-hhhcccccCCcee
Confidence 5677778888886778888888 68888899987554432 568999999999999998 8999999999999
Q ss_pred EEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeeccccccc
Q 010287 308 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP 386 (513)
Q Consensus 308 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~ 386 (513)
+||+...+. +++ +.+|...+.++.|+|-+.+.++|+ |..+++||++. ..+...+.+|...+
T Consensus 96 ~wDleeAk~----vrt------------Ltgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s~~~vv- 157 (825)
T KOG0267|consen 96 VWDLEEAKI----VRT------------LTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-KGCSHTYKSHTRVV- 157 (825)
T ss_pred eeehhhhhh----hhh------------hhccccCcceeeeccceEEeccccccccceehhhhc-cCceeeecCCccee-
Confidence 999987665 333 566778899999999999998877 59999999996 77888888877653
Q ss_pred ccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 387 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 387 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
..+.|+|+|++++.|++|..+++||+..+ +....++.|...+..+-++|..-++++|+.|+.+++
T Consensus 158 --------------~~l~lsP~Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f 222 (825)
T KOG0267|consen 158 --------------DVLRLSPDGRWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRF 222 (825)
T ss_pred --------------EEEeecCCCceeeccCCcceeeeeccccc-ccccccccccccccccccCchhhhhccCCCCceeee
Confidence 37899999999999999999999999877 666899999999999999999999999999999999
Q ss_pred ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcE
Q 010287 467 VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSL 508 (513)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~ 508 (513)
|.+..+++....-.....|.+++|+|++..+++|-..++
T Consensus 223 ---~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 223 ---WDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred ---eccceeEEeeccCCccCCceeeeecCCceeeecCchhhh
Confidence 666655565555556788999999999999988865443
No 145
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1.8e-20 Score=171.59 Aligned_cols=293 Identities=11% Similarity=0.119 Sum_probs=187.7
Q ss_pred CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeecCCC
Q 010287 47 GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126 (513)
Q Consensus 47 g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~ 126 (513)
+.++++++.|+.|++||..+++. ...+..+ ..+..++|+| ++
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~-----------------------~~~~~~~-------------~~~~~l~~~~--dg 42 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEV-----------------------TRTFPVG-------------QRPRGITLSK--DG 42 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCce-----------------------EEEEECC-------------CCCCceEECC--CC
Confidence 35788999999999999876543 1233333 3367899955 66
Q ss_pred ceE-EEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCC
Q 010287 127 ALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (513)
Q Consensus 127 ~~l-~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 205 (513)
..+ ++++.++.|++||..+++......... ....+.++|+|+.+ .+....++
T Consensus 43 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----------------~~~~~~~~~~g~~l-----------~~~~~~~~ 95 (300)
T TIGR03866 43 KLLYVCASDSDTIQVIDLATGEVIGTLPSGP----------------DPELFALHPNGKIL-----------YIANEDDN 95 (300)
T ss_pred CEEEEEECCCCeEEEEECCCCcEEEeccCCC----------------CccEEEECCCCCEE-----------EEEcCCCC
Confidence 666 556789999999999876544322111 11246788888754 12234578
Q ss_pred ceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cC-CeEEEEEcCCCcceeeecccCccccccccCC
Q 010287 206 SLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD-LRINLWNLEISNQSFNIVDVKPANMEDLTEV 283 (513)
Q Consensus 206 ~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (513)
.+.+||+..... ...+ .+...+.+++|+|+++.++++ .+ ..+.+||.++......+ .....
T Consensus 96 ~l~~~d~~~~~~------~~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~---------~~~~~ 158 (300)
T TIGR03866 96 LVTVIDIETRKV------LAEI--PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV---------LVDQR 158 (300)
T ss_pred eEEEEECCCCeE------EeEe--eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE---------EcCCC
Confidence 999999865332 1111 122346789999999999988 44 45777898765432211 12234
Q ss_pred eEEEEEeCCCCeEE-EEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEE--eC
Q 010287 284 ITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--DY 360 (513)
Q Consensus 284 i~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~~ 360 (513)
+.+++|+|++ ..+ +++..++.|++||+++++.. ..+...... ..........++|+|++++++.+ .+
T Consensus 159 ~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~----~~~~~~~~~-----~~~~~~~~~~i~~s~dg~~~~~~~~~~ 228 (300)
T TIGR03866 159 PRFAEFTADG-KELWVSSEIGGTVSVIDVATRKVI----KKITFEIPG-----VHPEAVQPVGIKLTKDGKTAFVALGPA 228 (300)
T ss_pred ccEEEECCCC-CEEEEEcCCCCEEEEEEcCcceee----eeeeecccc-----cccccCCccceEECCCCCEEEEEcCCC
Confidence 5789999998 555 55567999999999887642 222111000 00000124568899999986653 34
Q ss_pred CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEE-eCCCcEEEEecCCCCccceeecCC
Q 010287 361 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEAS 439 (513)
Q Consensus 361 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~ 439 (513)
+.+.+||+++ ++....+.... . ++.++|+|+|++|+++ ..+|.|.+||+.++ .....++..
T Consensus 229 ~~i~v~d~~~-~~~~~~~~~~~-~---------------~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~~~~~ 290 (300)
T TIGR03866 229 NRVAVVDAKT-YEVLDYLLVGQ-R---------------VWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKSIKVG 290 (300)
T ss_pred CeEEEEECCC-CcEEEEEEeCC-C---------------cceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEEEEcc
Confidence 7899999985 55554432211 1 3489999999999876 46899999999987 333555544
Q ss_pred CCceeEEEEcC
Q 010287 440 KNPMRRQVQTP 450 (513)
Q Consensus 440 ~~~v~~~~~~~ 450 (513)
..| +.++++|
T Consensus 291 ~~~-~~~~~~~ 300 (300)
T TIGR03866 291 RLP-WGVVVRP 300 (300)
T ss_pred ccc-ceeEeCC
Confidence 333 6666654
No 146
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.3e-21 Score=168.98 Aligned_cols=255 Identities=13% Similarity=0.094 Sum_probs=193.6
Q ss_pred CCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCcccccccc
Q 010287 203 GVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT 281 (513)
Q Consensus 203 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (513)
....+.+|.+...+.... . .--+++|.+++-+|+|.+++.| -.|.|++|.+.++..+. .+..|-
T Consensus 59 ~rp~l~vw~i~k~~~~~q-~------~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~--------v~~aHY 123 (476)
T KOG0646|consen 59 KRPLLHVWEILKKDQVVQ-Y------IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN--------VLSAHY 123 (476)
T ss_pred cCccccccccCchhhhhh-h------cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHH--------HHHhhc
Confidence 445788888765544331 0 1234679999999999999998 79999999999887553 457899
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec--CCEEEEEe
Q 010287 282 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--GRHILSRD 359 (513)
Q Consensus 282 ~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~--~~~l~~~~ 359 (513)
..|+|+.|+.|+ .+|++|+.||.|.+|++...-. .... ..+.+...+.+|.-+|+++...+. ...+++++
T Consensus 124 Q~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~------a~~~-~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS 195 (476)
T KOG0646|consen 124 QSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVS------ADND-HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS 195 (476)
T ss_pred cceeEEEEeCCC-cEEEecCCCccEEEEEEEeecc------cccC-CCccceeeeccCcceeEEEEecCCCccceEEEec
Confidence 999999999999 9999999999999999754211 1111 134455567889999999998864 45677766
Q ss_pred -CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC--------
Q 010287 360 -YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS-------- 430 (513)
Q Consensus 360 -~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-------- 430 (513)
|.++++||+.. +..+.++..+.. +.+++.+|.++.++.|+.+|.|.+.++....
T Consensus 196 ~D~t~k~wdlS~-g~LLlti~fp~s----------------i~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~ 258 (476)
T KOG0646|consen 196 EDRTIKLWDLSL-GVLLLTITFPSS----------------IKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQ 258 (476)
T ss_pred CCceEEEEEecc-ceeeEEEecCCc----------------ceeEEEcccccEEEecCCcceEEeeehhcCCcccccccc
Confidence 59999999997 777777765543 3489999999999999999999988876532
Q ss_pred -------ccceeecCCCC--ceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEE
Q 010287 431 -------AESTTLEASKN--PMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSI 500 (513)
Q Consensus 431 -------~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l 500 (513)
.....+.+|.+ +|++++++.||.+|++|+.||.|.+ |++...+.........++|+.+.+.|-.+-.
T Consensus 259 k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vcv---Wdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~ 334 (476)
T KOG0646|consen 259 KGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCV---WDIYSKQCIRTLQTSKGPVTNLQINPLERGI 334 (476)
T ss_pred cccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEE---EecchHHHHHHHhhhccccceeEeeccccce
Confidence 12245668887 9999999999999999999999999 6655433333333357889999887664433
No 147
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=3.5e-21 Score=157.98 Aligned_cols=307 Identities=14% Similarity=0.212 Sum_probs=194.9
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
+.|+++..-+. .+.++++|+.||.|.+||+++-.-.....+-.
T Consensus 44 GsvNsL~id~t-egrymlSGgadgsi~v~Dl~n~t~~e~s~li~------------------------------------ 86 (397)
T KOG4283|consen 44 GSVNSLQIDLT-EGRYMLSGGADGSIAVFDLQNATDYEASGLIA------------------------------------ 86 (397)
T ss_pred Cccceeeeccc-cceEEeecCCCccEEEEEeccccchhhcccee------------------------------------
Confidence 88999998653 47899999999999999998643111000000
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEEEEE-cCCeEEEEEcCCCcceeeec
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIV 270 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~~~~~~~ 270 (513)
..+.+ ..+....+|...|..+.|-| |...|.++ -|.++++||.++.+....+
T Consensus 87 ------------k~~c~-------------v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F- 140 (397)
T KOG4283|consen 87 ------------KHKCI-------------VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF- 140 (397)
T ss_pred ------------heeee-------------ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe-
Confidence 00000 01111358888999999999 55566666 5999999999977654432
Q ss_pred ccCccccccccCCeEEEEEeCCCC--eEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287 271 DVKPANMEDLTEVITSAEFHPTHC--NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 348 (513)
Q Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 348 (513)
+ ..+.|.+-+++|-.. .++|+|..|-.|++.|+.+|... .+ +.+|.+.|.++.|
T Consensus 141 -----~---me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s----H~------------LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 141 -----K---MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS----HT------------LSGHRDGVLAVEW 196 (397)
T ss_pred -----e---cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce----ee------------eccccCceEEEEe
Confidence 1 245677777777431 47888899999999999998762 22 6778899999999
Q ss_pred eecCCEEEE-Ee-CCeEEEEEccCCCCCeeeeecccccccccccccccCCcc-ceeeEEEeCCCCEEEEEeCCCcEEEEe
Q 010287 349 ARNGRHILS-RD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIF-DKFECCLSGDGGRVATGSYSNLFRVFG 425 (513)
Q Consensus 349 sp~~~~l~~-~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~vwd 425 (513)
+|..+++++ |+ ||.|++||++....+...+..|......+.. .+...+ -|+.++|+.|+.++++.+.|..+++|+
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~--~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK--TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc--ccccccceeeeeeecccchhhhhccCccceEEee
Confidence 998887665 55 5999999999755677777777754333222 111111 255899999999999999999999999
Q ss_pred cCCCCccceeec--CCCCce---eEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEE
Q 010287 426 CSEGSAESTTLE--ASKNPM---RRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSI 500 (513)
Q Consensus 426 ~~~~~~~~~~~~--~~~~~v---~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l 500 (513)
..+|...+..+. .|.... ..+. +.+...++.--.++.+.++....- .+......|...|.+.++-|+-+..
T Consensus 275 ~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sg---s~ir~l~~h~k~i~c~~~~~~fq~~ 350 (397)
T KOG4283|consen 275 MESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEG---SFVRRLSTHLKRINCAAYRPDFEQC 350 (397)
T ss_pred cccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCc---eEEEeeecccceeeEEeecCchhhh
Confidence 988743322111 111100 0011 111112221122233333111100 1111222367788999999987766
Q ss_pred EEEc-CCcEEEEe
Q 010287 501 ACAA-SNSLYMYY 512 (513)
Q Consensus 501 a~~~-~~~~~i~~ 512 (513)
.++. +.++..|.
T Consensus 351 ~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 351 FTGDMNGNIYMWS 363 (397)
T ss_pred hccccCCcccccc
Confidence 6666 66666664
No 148
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=9.8e-23 Score=196.41 Aligned_cols=202 Identities=17% Similarity=0.204 Sum_probs=160.7
Q ss_pred ccccCCeEEEEeccCCC-EEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287 229 HAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 306 (513)
Q Consensus 229 ~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 306 (513)
..|.+.|..+.|++... .|++| +||.|.|||++..+..+..- -....+.|.+++|+..-...|++++.+|++
T Consensus 113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~ 186 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG------SQAPPSEIKCLSWNRKVSHILASGSPSGRA 186 (1049)
T ss_pred cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC------CCCCcccceEeccchhhhHHhhccCCCCCc
Confidence 57899999999999654 88998 79999999999755443321 122357799999998876889999999999
Q ss_pred EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC-CEEEE--EeC--CeEEEEEccCCCCCeeeeecc
Q 010287 307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILS--RDY--MTLKLWDINMDSGPVATFQVH 381 (513)
Q Consensus 307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~l~~--~~~--~~v~iwd~~~~~~~~~~~~~~ 381 (513)
.|||+|..+.+ ..+.... ....+..+.|+|+. ..|++ .+| -.|.+||++....+++.+++|
T Consensus 187 ~iWDlr~~~pi----i~ls~~~----------~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H 252 (1049)
T KOG0307|consen 187 VIWDLRKKKPI----IKLSDTP----------GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH 252 (1049)
T ss_pred eeccccCCCcc----cccccCC----------CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc
Confidence 99999987543 2222111 11357889999975 33333 334 789999999888899999999
Q ss_pred cccccccccccccCCccceeeEEEeCCC-CEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCC-ceeeec
Q 010287 382 EHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGS 459 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 459 (513)
+.. |.++.|.+.+ ++|++++.|+.|.+|+.+++ +.+..+....+++..+.|.|... .++.++
T Consensus 253 ~~G---------------ilslsWc~~D~~lllSsgkD~~ii~wN~~tg-Evl~~~p~~~nW~fdv~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 253 QRG---------------ILSLSWCPQDPRLLLSSGKDNRIICWNPNTG-EVLGELPAQGNWCFDVQWCPRNPSVMAAAS 316 (1049)
T ss_pred ccc---------------eeeeccCCCCchhhhcccCCCCeeEecCCCc-eEeeecCCCCcceeeeeecCCCcchhhhhe
Confidence 875 5699999866 88999999999999999997 56677777888999999999888 778889
Q ss_pred CCCeEEE
Q 010287 460 LSGVVRR 466 (513)
Q Consensus 460 ~d~~i~~ 466 (513)
.||.|.|
T Consensus 317 fdgkI~I 323 (1049)
T KOG0307|consen 317 FDGKISI 323 (1049)
T ss_pred eccceee
Confidence 9999999
No 149
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=2.2e-21 Score=161.20 Aligned_cols=287 Identities=15% Similarity=0.160 Sum_probs=205.9
Q ss_pred CceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccc------cceeeEeeccccCCeEEEEec-------c
Q 010287 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLV------AGCRRIYAHAHDYHINSISNN-------S 242 (513)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~h~~~v~~~~~~-------~ 242 (513)
...|+|||.++ ++...+..+++|++........ ......+-......|...+|- |
T Consensus 54 gckWSPDGSci------------L~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP 121 (406)
T KOG2919|consen 54 GCKWSPDGSCI------------LSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP 121 (406)
T ss_pred cceeCCCCceE------------EeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC
Confidence 44799999998 8888999999999854322111 111111112223446666663 5
Q ss_pred CCCEEEEE-cCCeEEEEEcCCCcceeeecccCcccccccc---CCeEEEEEeCCCCeEEEEEeCCCcEEEEEc-CCcccc
Q 010287 243 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT---EVITSAEFHPTHCNMLAYSSSKGSIRLIDM-RQSALC 317 (513)
Q Consensus 243 ~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~~~~ 317 (513)
+..+++++ .+.-|++||.-+++..... ....|. ....+++|+||| ..|+ ++....|++||+ |.|..+
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lraSy------~~ydh~de~taAhsL~Fs~DG-eqlf-aGykrcirvFdt~RpGr~c 193 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRASY------RAYDHQDEYTAAHSLQFSPDG-EQLF-AGYKRCIRVFDTSRPGRDC 193 (406)
T ss_pred ccceeeeccccCceeeeeccccccccch------hhhhhHHhhhhheeEEecCCC-CeEe-ecccceEEEeeccCCCCCC
Confidence 66777777 6999999999988754322 122233 235699999999 6555 468899999999 666654
Q ss_pred cccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccC
Q 010287 318 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND 395 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (513)
........+. .+..+-+.+++|+| +...++.|+. ..+-||.-.. +.++..+.+|.+.
T Consensus 194 ~vy~t~~~~k---------~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gG----------- 252 (406)
T KOG2919|consen 194 PVYTTVTKGK---------FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGG----------- 252 (406)
T ss_pred cchhhhhccc---------ccccceeeeeeccCCCCcceeeecccceeeeEecCC-CCceeeecccCCC-----------
Confidence 4322222221 23347799999999 5568888887 8888888774 8899999888876
Q ss_pred CccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCCCccceeecCCCC-ceeEEEE--cCCCCceeeecCCCeEEEecCCC
Q 010287 396 SIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKN-PMRRQVQ--TPSRPSRPLGSLSGVVRRVKGAD 471 (513)
Q Consensus 396 ~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~--~~~~~~l~~~~~d~~i~~~~~~~ 471 (513)
|+.++|.++|+.|.+|. .|-.|..||++.....+..+..|.. .-..+.| .|.+++|++|+.||.|++ |+
T Consensus 253 ----vThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~v---wd 325 (406)
T KOG2919|consen 253 ----VTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRV---WD 325 (406)
T ss_pred ----eeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEE---Ee
Confidence 67999999999999988 5788999999987777788888876 5556666 688999999999999999 33
Q ss_pred CCcc-ccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEE
Q 010287 472 NSAL-DANGNAFDFSMKLLHLAWHPSENSIACAASNSLYM 510 (513)
Q Consensus 472 ~~~~-~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i 510 (513)
.... ........++..++.++++|--.++|+++...++-
T Consensus 326 lk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~f~ 365 (406)
T KOG2919|consen 326 LKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIFK 365 (406)
T ss_pred cCCCCCcccccccccccccceecCcccceeeeccCceeec
Confidence 3210 11122334688999999999999999988776553
No 150
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=3.8e-21 Score=173.75 Aligned_cols=146 Identities=10% Similarity=0.157 Sum_probs=109.1
Q ss_pred cEEEEEEee-cCCEEEEEeC-CeEEEEEccCCC------CCeeeeecccccccccccccccCCccceeeEEEeCC-CCEE
Q 010287 342 SISDIKFAR-NGRHILSRDY-MTLKLWDINMDS------GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGRV 412 (513)
Q Consensus 342 ~v~~i~~sp-~~~~l~~~~~-~~v~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l 412 (513)
.|+.+.|.| |.+.|+++.| |.|++|.+..++ .+...+..|... |+.+.|+|- .+.|
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK---------------I~slRfHPLAadvL 693 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK---------------ITSLRFHPLAADVL 693 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce---------------EEEEEecchhhhHh
Confidence 567888998 7777777665 999999997633 334455566554 558999994 4688
Q ss_pred EEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEE
Q 010287 413 ATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLA 492 (513)
Q Consensus 413 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 492 (513)
++++.|-+|++||+.+. .....+.+|.+.|..++|+|+|+.+|+.+.||.++++........-..+. -....+-..+.
T Consensus 694 a~asyd~Ti~lWDl~~~-~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~-gpvgtRgARi~ 771 (1012)
T KOG1445|consen 694 AVASYDSTIELWDLANA-KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGK-GPVGTRGARIL 771 (1012)
T ss_pred hhhhccceeeeeehhhh-hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCC-CCccCcceeEE
Confidence 99999999999999987 55688999999999999999999999999999999922221111001110 01134557888
Q ss_pred EeCCCCEEEEEc
Q 010287 493 WHPSENSIACAA 504 (513)
Q Consensus 493 ~sp~~~~la~~~ 504 (513)
|.-||+++++.+
T Consensus 772 wacdgr~viv~G 783 (1012)
T KOG1445|consen 772 WACDGRIVIVVG 783 (1012)
T ss_pred EEecCcEEEEec
Confidence 999999988665
No 151
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.89 E-value=1.1e-20 Score=154.92 Aligned_cols=208 Identities=14% Similarity=0.244 Sum_probs=156.1
Q ss_pred cccCCeEEEEecc-CCCEEEEEc-CCeEEEEEcCCCcc-eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287 230 AHDYHINSISNNS-DGETFISAD-DLRINLWNLEISNQ-SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 306 (513)
Q Consensus 230 ~h~~~v~~~~~~~-~~~~l~s~~-d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 306 (513)
.+..++++..|+. +.++|.+++ |.+..|||++++.. .++ ..+-.|...|..++|...+..+|++.+.||.+
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vk------TQLIAHDKEV~DIaf~~~s~~~FASvgaDGSv 221 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVK------TQLIAHDKEVYDIAFLKGSRDVFASVGADGSV 221 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeecccccee------eEEEecCcceeEEEeccCccceEEEecCCCcE
Confidence 4456789999988 566777774 99999999997622 111 14567999999999999887899999999999
Q ss_pred EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEE-EeC-CeEEEEEccCCCCCeeeeecccc
Q 010287 307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILS-RDY-MTLKLWDINMDSGPVATFQVHEH 383 (513)
Q Consensus 307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~-~~~-~~v~iwd~~~~~~~~~~~~~~~~ 383 (513)
|+||+|..+-. ...++.+.. +.+...++|++ |-.++++ +-+ ..|.|.|++.+..++..++.|..
T Consensus 222 RmFDLR~leHS---TIIYE~p~~----------~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a 288 (364)
T KOG0290|consen 222 RMFDLRSLEHS---TIIYEDPSP----------STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA 288 (364)
T ss_pred EEEEecccccc---eEEecCCCC----------CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc
Confidence 99999975431 233444331 25688899998 5567777 445 89999999999999999999998
Q ss_pred cccccccccccCCccceeeEEEeCCC-CEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCC
Q 010287 384 LRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG 462 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 462 (513)
.+ ..++|.|.. ..|+++++|..+.+||+...... .-..|+ |
T Consensus 289 ~V---------------NgIaWaPhS~~hictaGDD~qaliWDl~q~~~~-----~~~dPi-----------l------- 330 (364)
T KOG0290|consen 289 SV---------------NGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE-----NGEDPI-----------L------- 330 (364)
T ss_pred cc---------------cceEecCCCCceeeecCCcceEEEEeccccccc-----CCCCch-----------h-------
Confidence 74 489999965 57999999999999999854220 000111 0
Q ss_pred eEEEecCCCCCccccCCccccccCCeeEEEEeCC-CCEEEEEcCCcEEEEe
Q 010287 463 VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPS-ENSIACAASNSLYMYY 512 (513)
Q Consensus 463 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-~~~la~~~~~~~~i~~ 512 (513)
...-.+.|+.++|+|. ..++|++..+.+.|..
T Consensus 331 ------------------ay~a~~EVNqi~Ws~~~~Dwiai~~~kkleiLR 363 (364)
T KOG0290|consen 331 ------------------AYTAGGEVNQIQWSSSQPDWIAICFGKKLEILR 363 (364)
T ss_pred ------------------hhhccceeeeeeecccCCCEEEEEecCeeeEEe
Confidence 0012678999999965 6889999988887754
No 152
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=5.1e-21 Score=167.93 Aligned_cols=209 Identities=14% Similarity=0.169 Sum_probs=164.9
Q ss_pred CcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccc
Q 010287 198 SFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 276 (513)
Q Consensus 198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~ 276 (513)
.++++..+.+++||+...- ...++.+|...|+++.++....+|+++ ..|.|.+..+.++...-.+ .
T Consensus 94 ~~sgG~~~~Vkiwdl~~kl-------~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f------~ 160 (673)
T KOG4378|consen 94 EISGGQSGCVKIWDLRAKL-------IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF------T 160 (673)
T ss_pred eeccCcCceeeehhhHHHH-------HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce------e
Confidence 3788899999999997422 223468999999999999999999999 6899999999876654321 1
Q ss_pred cccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCE-E
Q 010287 277 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH-I 355 (513)
Q Consensus 277 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-l 355 (513)
.+....|+-+.|+|....+|.+++.+|.|.+||+...... .. ....|+.+...|+|+|..+. |
T Consensus 161 -~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~----~~-----------~~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 161 -IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI----FH-----------ASEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred -cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc----cc-----------hhhhccCCcCcceecCCccceE
Confidence 1224557789999998778899999999999998765431 11 23567789999999996654 4
Q ss_pred EE-EeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccce
Q 010287 356 LS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAEST 434 (513)
Q Consensus 356 ~~-~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 434 (513)
++ |-|..|.+||+.. ......+..... ...++|+++|.+|+.|+..|.|..||++..+..+.
T Consensus 225 vsVG~Dkki~~yD~~s-~~s~~~l~y~~P----------------lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~ 287 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRS-QASTDRLTYSHP----------------LSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVA 287 (673)
T ss_pred EEecccceEEEeeccc-ccccceeeecCC----------------cceeeecCCceEEEeecCCceEEEEecccCCCCce
Confidence 44 5569999999985 555555544333 23899999999999999999999999998878889
Q ss_pred eecCCCCceeEEEEcCCC
Q 010287 435 TLEASKNPMRRQVQTPSR 452 (513)
Q Consensus 435 ~~~~~~~~v~~~~~~~~~ 452 (513)
++..|...|.+++|.|..
T Consensus 288 v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 288 VRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EeeecccceeEEEeeecc
Confidence 999999999999997764
No 153
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.9e-21 Score=161.79 Aligned_cols=286 Identities=17% Similarity=0.243 Sum_probs=191.6
Q ss_pred CEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeecCCCc
Q 010287 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA 127 (513)
Q Consensus 48 ~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 127 (513)
..+|++..+|.|+|||..+++. ..+|.++. ..++.++|.......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~-----------------------l~~fk~~~------------~~~N~vrf~~~ds~h 85 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL-----------------------LEEFKGPP------------ATTNGVRFISCDSPH 85 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh-----------------------hheecCCC------------CcccceEEecCCCCC
Confidence 5799999999999999888663 36788888 789999997533456
Q ss_pred eEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCce
Q 010287 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (513)
Q Consensus 128 ~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 207 (513)
.+.+++.||+|++||++.......+..
T Consensus 86 ~v~s~ssDG~Vr~wD~Rs~~e~a~~~~----------------------------------------------------- 112 (376)
T KOG1188|consen 86 GVISCSSDGTVRLWDIRSQAESARISW----------------------------------------------------- 112 (376)
T ss_pred eeEEeccCCeEEEEEeecchhhhheec-----------------------------------------------------
Confidence 788999999999999987653332211
Q ss_pred eceeeccCCcccccceeeEeecccc-CCeEEEEeccCCCEEEEE-----cCCeEEEEEcCCCcceeeecccCcccccccc
Q 010287 208 RLPVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA-----DDLRINLWNLEISNQSFNIVDVKPANMEDLT 281 (513)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~-----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (513)
.++. .+..|++.+..++.+++| .+-.|.+||++..++.+.. -.+.|.
T Consensus 113 ---------------------~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~------~~eSH~ 165 (376)
T KOG1188|consen 113 ---------------------TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ------LNESHN 165 (376)
T ss_pred ---------------------cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh------hhhhcc
Confidence 1222 345677777677788876 3788999999987764432 347799
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC--CEEEEEe
Q 010287 282 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--RHILSRD 359 (513)
Q Consensus 282 ~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~l~~~~ 359 (513)
+.|+++.|+|..+++|++|+.||.|.+||+......+....+ -.|...|.++.|..++ +......
T Consensus 166 DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~v-------------iN~~sSI~~igw~~~~ykrI~clTH 232 (376)
T KOG1188|consen 166 DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHV-------------INHGSSIHLIGWLSKKYKRIMCLTH 232 (376)
T ss_pred CcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHh-------------hcccceeeeeeeecCCcceEEEEEc
Confidence 999999999999999999999999999998754322221222 2244679999999877 5333345
Q ss_pred CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC-CCCEEEEEeC-CCcEEEEecC---CC--Ccc
Q 010287 360 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSY-SNLFRVFGCS---EG--SAE 432 (513)
Q Consensus 360 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~-dg~i~vwd~~---~~--~~~ 432 (513)
..+..+|++.. +.+...+....-........ -.+-+ +.. +.+| +....+.++. -|...++-+. ++ ...
T Consensus 233 ~Etf~~~ele~-~~~~~~~~~~~~~~~d~r~~--~~~dY-~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~ 307 (376)
T KOG1188|consen 233 METFAIYELED-GSEETWLENPDVSADDLRKE--DNCDY-VIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTE 307 (376)
T ss_pred cCceeEEEccC-CChhhcccCccchhhhHHhh--hhhhh-eee-cccCCCcceEEEeccccCceeEEEeeecccccccCc
Confidence 59999999985 55443332221100000000 00000 001 2223 3445554443 5566655443 22 122
Q ss_pred ceeecC-CCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 433 STTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 433 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
...+.+ |..-|+++.|...+..+.+|++||.+.+
T Consensus 308 ~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~ 342 (376)
T KOG1188|consen 308 PAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQA 342 (376)
T ss_pred cccccCCcHHHHHHHhhhcccceeeccCCCceEEE
Confidence 345555 6777889999999999999999999999
No 154
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.7e-20 Score=175.43 Aligned_cols=272 Identities=13% Similarity=0.192 Sum_probs=199.6
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
..-+.|+| .++|..+++++.||.|++|+.........
T Consensus 14 ~G~t~i~~--d~~gefi~tcgsdg~ir~~~~~sd~e~P~----------------------------------------- 50 (933)
T KOG1274|consen 14 GGLTLICY--DPDGEFICTCGSDGDIRKWKTNSDEEEPE----------------------------------------- 50 (933)
T ss_pred CceEEEEE--cCCCCEEEEecCCCceEEeecCCcccCCc-----------------------------------------
Confidence 77889999 55888999999999999998765421000
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
. +.-+...|.+++.. +..|++| .+++|.+|.+..+...-
T Consensus 51 -------------t---------------------i~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~---- 90 (933)
T KOG1274|consen 51 -------------T---------------------IDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDT---- 90 (933)
T ss_pred -------------h---------------------hhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCccc----
Confidence 0 01133446666554 4478887 79999999988655321
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 351 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 351 (513)
.+....-++++++++.+| ++++.|+.|-.|++-++..... .+. +.+|.++|.++.|+|+
T Consensus 91 ----iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~----~~~------------lrgh~apVl~l~~~p~ 149 (933)
T KOG1274|consen 91 ----ILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQ----EKV------------LRGHDAPVLQLSYDPK 149 (933)
T ss_pred ----eeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccch----hee------------ecccCCceeeeeEcCC
Confidence 223457789999999999 9999999999999999876554 222 5667799999999999
Q ss_pred CCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287 352 GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 430 (513)
Q Consensus 352 ~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 430 (513)
+.+||+.+ +|.|++||+.. +....++.+-....... . -..+..++|+|+|..++....|+.|++|+...+.
T Consensus 150 ~~fLAvss~dG~v~iw~~~~-~~~~~tl~~v~k~n~~~----~---s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we 221 (933)
T KOG1274|consen 150 GNFLAVSSCDGKVQIWDLQD-GILSKTLTGVDKDNEFI----L---SRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE 221 (933)
T ss_pred CCEEEEEecCceEEEEEccc-chhhhhcccCCcccccc----c---cceeeeeeecCCCCeEEeeccCCeEEEEccCCce
Confidence 99999976 59999999995 66666655432211000 0 0113478999998888888899999999999874
Q ss_pred ccc-eeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEE
Q 010287 431 AES-TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 503 (513)
Q Consensus 431 ~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~ 503 (513)
... ...+.+...+..+.|+|.|+|||+++.||.|-+ |+... ....++...|.+++|.|+++.|-.-
T Consensus 222 ~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~v---Wnv~t----~~~~~~~~~Vc~~aw~p~~n~it~~ 288 (933)
T KOG1274|consen 222 LQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILV---WNVDT----HERHEFKRAVCCEAWKPNANAITLI 288 (933)
T ss_pred eheeecccccccceEEEEEcCCCcEEeeeccCCcEEE---Eeccc----chhccccceeEEEecCCCCCeeEEE
Confidence 443 222344445889999999999999999999999 54432 1113457889999999999877643
No 155
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.88 E-value=4.2e-20 Score=167.11 Aligned_cols=204 Identities=16% Similarity=0.169 Sum_probs=145.1
Q ss_pred CeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEeC-
Q 010287 283 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY- 360 (513)
Q Consensus 283 ~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~- 360 (513)
.|+++.|+|-+...|+.++.||.|++|.+..+..... ...+...++.|...|+++.|+| -...|++++.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~---------~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd 699 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN---------EMTPEKILTIHGEKITSLRFHPLAADVLAVASYD 699 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcc---------cCCcceeeecccceEEEEEecchhhhHhhhhhcc
Confidence 3677888887667999999999999999987654221 1112234778889999999999 4567777664
Q ss_pred CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCC
Q 010287 361 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK 440 (513)
Q Consensus 361 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 440 (513)
.+|++||+++ ++....+.+|... |+.++|||||+.+++.+.||+|++|+..++...+..-++..
T Consensus 700 ~Ti~lWDl~~-~~~~~~l~gHtdq---------------If~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv 763 (1012)
T KOG1445|consen 700 STIELWDLAN-AKLYSRLVGHTDQ---------------IFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV 763 (1012)
T ss_pred ceeeeeehhh-hhhhheeccCcCc---------------eeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCc
Confidence 9999999997 8888889999876 56999999999999999999999999998765554443332
Q ss_pred C-ceeEEEEcCCCCceeeecCCCeEE----EecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc--CCcEEEE
Q 010287 441 N-PMRRQVQTPSRPSRPLGSLSGVVR----RVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA--SNSLYMY 511 (513)
Q Consensus 441 ~-~v~~~~~~~~~~~l~~~~~d~~i~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~--~~~~~i~ 511 (513)
+ .-..+.|.-+|+++++.+.|..-. +++...+....+....++..-.+.--.+.+|.+.|...+ +..+++|
T Consensus 764 gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~y 841 (1012)
T KOG1445|consen 764 GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMY 841 (1012)
T ss_pred cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEE
Confidence 2 234688999999998888875543 333333322122223333344555566778877766444 4455554
No 156
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.88 E-value=1.7e-20 Score=160.80 Aligned_cols=334 Identities=12% Similarity=0.173 Sum_probs=216.4
Q ss_pred cccEEEEEEcCCCC-EEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287 35 VDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (513)
Q Consensus 35 ~~~V~~v~~sp~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (513)
..+|.++.|.++.. .+|||+.|..|+||.+...+.-+. .....+...+..|+ .
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~--------------~~~V~y~s~Ls~H~------------~ 66 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG--------------DMKVEYLSSLSRHT------------R 66 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC--------------ceeEEEeecccCCc------------c
Confidence 57999999999866 999999999999999876553210 02445677788888 8
Q ss_pred cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (513)
Q Consensus 114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (513)
+|+++.|+| +|+.|++|+.+|.|.+|....-... ... . .
T Consensus 67 aVN~vRf~p--~gelLASg~D~g~v~lWk~~~~~~~---~~d---------------------------~-e-------- 105 (434)
T KOG1009|consen 67 AVNVVRFSP--DGELLASGGDGGEVFLWKQGDVRIF---DAD---------------------------T-E-------- 105 (434)
T ss_pred eeEEEEEcC--CcCeeeecCCCceEEEEEecCcCCc---ccc---------------------------c-h--------
Confidence 999999955 7889999999999999987651110 000 0 0
Q ss_pred CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc
Q 010287 194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 272 (513)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~ 272 (513)
.+...+....+..+.+|...|..++|+|++.+++++ -|+.+++||+..+....
T Consensus 106 ---------------------~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~----- 159 (434)
T KOG1009|consen 106 ---------------------ADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA----- 159 (434)
T ss_pred ---------------------hhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEe-----
Confidence 000000112233457899999999999999999999 69999999999776442
Q ss_pred CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccc-eeecc--ccCCCCc--ccc--ccccccEEE
Q 010287 273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS-KLFEE--QEAPGTR--SFF--TEIIASISD 345 (513)
Q Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~--~~~~~~~--~~~--~~~~~~v~~ 345 (513)
.+..|...+..++|.|-+ +++++-+.|...+.+.+...+...... ..+.. ......+ ..+ .........
T Consensus 160 ---~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrR 235 (434)
T KOG1009|consen 160 ---ILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRR 235 (434)
T ss_pred ---eccccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhh
Confidence 457899999999999998 899999999988877766544321111 00100 0000000 001 112235567
Q ss_pred EEEeecCCEEEEEe-----CCe-----EEEEEccCCCCCeeeeecccccccc--cccccccCCccceee-EEEeCCCCEE
Q 010287 346 IKFARNGRHILSRD-----YMT-----LKLWDINMDSGPVATFQVHEHLRPK--LCDLYENDSIFDKFE-CCLSGDGGRV 412 (513)
Q Consensus 346 i~~sp~~~~l~~~~-----~~~-----v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~-~~~s~~~~~l 412 (513)
++|+|+|.++++.. .+. .++|+-..-.++...+.......-. .+..|-.-+....+. +---|-+-.+
T Consensus 236 lsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvf 315 (434)
T KOG1009|consen 236 LSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVF 315 (434)
T ss_pred cccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEE
Confidence 88999999999732 133 3555544333444444333322100 000000000000001 1111333345
Q ss_pred EEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 413 ATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 413 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
+.++. +.|++||.++-......-..|-.+++.++|+++|..|+..|.||...+
T Consensus 316 aiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 316 AIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred EEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 56665 579999999875565677789999999999999999999999999877
No 157
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=1.6e-20 Score=169.81 Aligned_cols=271 Identities=15% Similarity=0.177 Sum_probs=179.9
Q ss_pred eccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287 228 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 306 (513)
Q Consensus 228 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 306 (513)
...|...|..+.|-|....|+++ +|.++++||+++.+..-. ..+.+|...|.+++|.|+++..|++|+.||.|
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~------~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~i 169 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG------RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEI 169 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc------eeecccccccchhhhccCCCcceeeccCCCcE
Confidence 46899999999999966677777 799999999997654321 13578999999999999999999999999999
Q ss_pred EEEEcCCccccc--c-cceeeccccC------CCCc--cccccccccEEE---EEEeecCCEEEEEe--CCeEEEEEccC
Q 010287 307 RLIDMRQSALCD--T-HSKLFEEQEA------PGTR--SFFTEIIASISD---IKFARNGRHILSRD--YMTLKLWDINM 370 (513)
Q Consensus 307 ~vwd~~~~~~~~--~-~~~~~~~~~~------~~~~--~~~~~~~~~v~~---i~~sp~~~~l~~~~--~~~v~iwd~~~ 370 (513)
.|||++-..... . ..+.+..++. +..+ .....+...|.+ +.+..|...|++++ |+.|+|||++.
T Consensus 170 llWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk 249 (720)
T KOG0321|consen 170 LLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRK 249 (720)
T ss_pred EEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecc
Confidence 999998644110 0 0111111111 1000 112234445555 55667888898854 59999999986
Q ss_pred CCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccc-eeecCCCCc--eeEEE
Q 010287 371 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES-TTLEASKNP--MRRQV 447 (513)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~--v~~~~ 447 (513)
+....+.- ......-.+++..-.+++++.....|.+|.+...|+.|++|++.+..... ..+.++... -..-.
T Consensus 250 ~~~~~r~e-----p~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~ 324 (720)
T KOG0321|consen 250 NYTAYRQE-----PRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSE 324 (720)
T ss_pred cccccccC-----CCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeee
Confidence 32211110 01111112223334456678888888998888889999999998753322 333333221 22345
Q ss_pred EcCCCCceeeecCCCeEEEecCCCCCccccC-CccccccCCeeEEEEeCCC--CEEEEEcCCcEEEEe
Q 010287 448 QTPSRPSRPLGSLSGVVRRVKGADNSALDAN-GNAFDFSMKLLHLAWHPSE--NSIACAASNSLYMYY 512 (513)
Q Consensus 448 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~sp~~--~~la~~~~~~~~i~~ 512 (513)
.+|++.+|++|+.|....+ |.....+.. ....+|...|+.++|.|.. +.+++..|.++.||.
T Consensus 325 lSpd~~~l~SgSsd~~ayi---w~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 325 LSPDDCSLLSGSSDEQAYI---WVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWR 389 (720)
T ss_pred cCCCCceEeccCCCcceee---eeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEe
Confidence 6899999999999999999 333322222 2345799999999999874 555565588888885
No 158
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=1.6e-19 Score=165.26 Aligned_cols=231 Identities=12% Similarity=0.096 Sum_probs=151.6
Q ss_pred eEEEEeccCCCEEE-EE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287 235 INSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 312 (513)
Q Consensus 235 v~~~~~~~~~~~l~-s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 312 (513)
+.+++|+|+++.++ ++ .++.|++||..+++.... +..+. .+..+.|+|++..++++++.++.+++||++
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~--------~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~ 103 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT--------LPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIE 103 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe--------ccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 56789999998774 55 689999999987654321 22222 256789999984344555678999999998
Q ss_pred CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeeccccccccccc
Q 010287 313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCD 390 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 390 (513)
+... +..++.. ..+.+++|+|++.+++++.. ..+.+||... .+..........
T Consensus 104 ~~~~----~~~~~~~-------------~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~------- 158 (300)
T TIGR03866 104 TRKV----LAEIPVG-------------VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT-YEIVDNVLVDQR------- 158 (300)
T ss_pred CCeE----EeEeeCC-------------CCcceEEECCCCCEEEEEecCCCeEEEEeCCC-CeEEEEEEcCCC-------
Confidence 7553 2222211 23678999999999998764 4677889875 444433322111
Q ss_pred ccccCCccceeeEEEeCCCCEEEEE-eCCCcEEEEecCCCCccceeecCC-----CC--ceeEEEEcCCCCceee-ecCC
Q 010287 391 LYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEAS-----KN--PMRRQVQTPSRPSRPL-GSLS 461 (513)
Q Consensus 391 ~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~-----~~--~v~~~~~~~~~~~l~~-~~~d 461 (513)
...++|+|++++|+++ ..++.|++||+.+++.. ..+..+ .. ....+.++|+++.++. .+.+
T Consensus 159 ---------~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~ 228 (300)
T TIGR03866 159 ---------PRFAEFTADGKELWVSSEIGGTVSVIDVATRKVI-KKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA 228 (300)
T ss_pred ---------ccEEEECCCCCEEEEEcCCCCEEEEEEcCcceee-eeeeecccccccccCCccceEECCCCCEEEEEcCCC
Confidence 1268999999988654 46899999999987432 222211 11 1236789999998544 3445
Q ss_pred CeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc--CCcEEEEeC
Q 010287 462 GVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA--SNSLYMYYA 513 (513)
Q Consensus 462 ~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~--~~~~~i~~~ 513 (513)
+.+.+.+.... +.. ....+...+.+++|+|++++|+++. ++.+.+|..
T Consensus 229 ~~i~v~d~~~~---~~~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 229 NRVAVVDAKTY---EVL-DYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred CeEEEEECCCC---cEE-EEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 66777322111 111 1122456799999999999998763 788999863
No 159
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=2.5e-20 Score=159.70 Aligned_cols=307 Identities=14% Similarity=0.167 Sum_probs=197.0
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
.+|..+.|.+... +.+++|+.|..|++|.+..+.-..
T Consensus 14 ~pv~s~dfq~n~~-~~laT~G~D~~iriW~v~r~~~~~------------------------------------------ 50 (434)
T KOG1009|consen 14 EPVYSVDFQKNSL-NKLATAGGDKDIRIWKVNRSEPGG------------------------------------------ 50 (434)
T ss_pred CceEEEEeccCcc-cceecccCccceeeeeeeecCCCC------------------------------------------
Confidence 6699999965322 389999999999999987654111
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcc------
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ------ 265 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~------ 265 (513)
++..+.. ...+..|...|+++.|+|+|+.|++| ++|.|.+|.......
T Consensus 51 ----------~~~~V~y---------------~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e 105 (434)
T KOG1009|consen 51 ----------GDMKVEY---------------LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTE 105 (434)
T ss_pred ----------CceeEEE---------------eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccch
Confidence 0011111 11257899999999999999999999 799999997761000
Q ss_pred --e-eeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccccccccc
Q 010287 266 --S-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 342 (513)
Q Consensus 266 --~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (513)
. .+.+- ....+.+|...|..++|+|++ .++++++.|..+++||+..|.+. .. +.+|...
T Consensus 106 ~~~~ke~w~-v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~----~~------------~~dh~~y 167 (434)
T KOG1009|consen 106 ADLNKEKWV-VKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLL----AI------------LDDHEHY 167 (434)
T ss_pred hhhCccceE-EEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeE----ee------------ccccccc
Confidence 0 00000 002457799999999999999 99999999999999999998863 22 4556688
Q ss_pred EEEEEEeecCCEEEE-EeCCeEEEEEccCCCCCeeeee-----c--ccccccccccccccCCccc-eeeEEEeCCCCEEE
Q 010287 343 ISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQ-----V--HEHLRPKLCDLYENDSIFD-KFECCLSGDGGRVA 413 (513)
Q Consensus 343 v~~i~~sp~~~~l~~-~~~~~v~iwd~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~ 413 (513)
+..++|.|-++++++ +.+...+.+.+.. .+.+.... . ..........+++++.+.. ...++|+|||..|+
T Consensus 168 vqgvawDpl~qyv~s~s~dr~~~~~~~~~-~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llv 246 (434)
T KOG1009|consen 168 VQGVAWDPLNQYVASKSSDRHPEGFSAKL-KQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLV 246 (434)
T ss_pred cceeecchhhhhhhhhccCcccceeeeee-eeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEE
Confidence 999999999999998 4456566666553 22221111 1 1111233344565555432 34689999999998
Q ss_pred EEeC----CC-----cEEEEecCCCCccceeecCCCCceeEEEEcCC------------------CCceeeecCCCeEEE
Q 010287 414 TGSY----SN-----LFRVFGCSEGSAESTTLEASKNPMRRQVQTPS------------------RPSRPLGSLSGVVRR 466 (513)
Q Consensus 414 ~~~~----dg-----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~------------------~~~l~~~~~d~~i~~ 466 (513)
+... ++ ..++|+-+..+.....+.....+...+.++|- +-.+|.+..| .|.+
T Consensus 247 tPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyv 325 (434)
T KOG1009|consen 247 TPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYV 325 (434)
T ss_pred cccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEE
Confidence 6532 22 33666655444444555555666655555431 2223333333 3333
Q ss_pred ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEE
Q 010287 467 VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 509 (513)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~ 509 (513)
+.+..... +-...--|-..|++++|++||..|+..|.|+.+
T Consensus 326 ydtq~~~P--~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyC 366 (434)
T KOG1009|consen 326 YDTQTLEP--LAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFC 366 (434)
T ss_pred eccccccc--eEEEeeeeeeeecceeecCCCcEEEEeccCCce
Confidence 33332220 111111367899999999999999999977765
No 160
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=2.1e-20 Score=155.87 Aligned_cols=317 Identities=17% Similarity=0.214 Sum_probs=207.2
Q ss_pred cccccccEEEEEEcCC-----CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccc-c-CCCCcc
Q 010287 31 EVQEVDIISAIEFDKS-----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-Q-SHEPEF 103 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~-----g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~h~~~~ 103 (513)
...|..+|..++|++- ...+|+.+.+ ++.||+......+ +..+.+ . .|+
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~i--------------------r~lq~y~D~d~~--- 89 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGI--------------------RLLQSYADEDHD--- 89 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccce--------------------eeeeeccCCCCC---
Confidence 4468899999999852 3466776654 7999996544321 111111 1 133
Q ss_pred cccccccccccceeEEEeecCC--CceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceecc
Q 010287 104 DYLKSLEIEEKINKIRWCQSAN--SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA 181 (513)
Q Consensus 104 ~~~~~~~~~~~i~~i~~~~~~~--~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (513)
+.-+.++|+-..+ +.++++++.-|.|+|.|+.++++...
T Consensus 90 ---------Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~------------------------------ 130 (385)
T KOG1034|consen 90 ---------ESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN------------------------------ 130 (385)
T ss_pred ---------cceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc------------------------------
Confidence 5677778865322 45788889999999999988764331
Q ss_pred CCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC-CEEEEE-cCCeEEEEE
Q 010287 182 NGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWN 259 (513)
Q Consensus 182 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~vwd 259 (513)
+.+|...|+.+.+.|+. ++++++ .|..|++|+
T Consensus 131 ----------------------------------------------~~ghG~sINeik~~p~~~qlvls~SkD~svRlwn 164 (385)
T KOG1034|consen 131 ----------------------------------------------YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWN 164 (385)
T ss_pred ----------------------------------------------eeccCccchhhhcCCCCCcEEEEecCCceEEEEe
Confidence 35888899999999964 667777 699999999
Q ss_pred cCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccc--ceeeccccCC----CCc
Q 010287 260 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH--SKLFEEQEAP----GTR 333 (513)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~----~~~ 333 (513)
+++.... .++ .-+.+|.+.|.++.|++++ ..|++++.|..+++|++...+..... ...+...... ...
T Consensus 165 I~~~~Cv-~Vf----GG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~ 238 (385)
T KOG1034|consen 165 IQTDVCV-AVF----GGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPK 238 (385)
T ss_pred ccCCeEE-EEe----cccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccc
Confidence 9976543 333 2568999999999999999 89999999999999999854321110 1111111100 000
Q ss_pred c------ccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCcccee--eEE
Q 010287 334 S------FFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF--ECC 404 (513)
Q Consensus 334 ~------~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~ 404 (513)
. .-.-|...|-|+.|- |.++++-+ ++.|..|..-.-.+.+......+.....+..+.-..| +++ ..+
T Consensus 239 ~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c--~iWfirf~ 314 (385)
T KOG1034|consen 239 THFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC--DIWFIRFA 314 (385)
T ss_pred cccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc--ceEEEEEe
Confidence 0 113477788888876 67888844 5899999872112222222111111111111000000 122 456
Q ss_pred EeCCCCEEEEEeCCCcEEEEecCCCCccc-eeec--CCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 405 LSGDGGRVATGSYSNLFRVFGCSEGSAES-TTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 405 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
|.|-+++||.|...|.|++||++...... .++. .....|+..+|+.++..|+....|+.|--
T Consensus 315 ~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwr 379 (385)
T KOG1034|consen 315 FDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWR 379 (385)
T ss_pred ecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEE
Confidence 67788999999999999999999875532 3333 33567899999999999999888888743
No 161
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=5.8e-20 Score=156.79 Aligned_cols=312 Identities=13% Similarity=0.104 Sum_probs=213.3
Q ss_pred cccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccc
Q 010287 27 TAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (513)
Q Consensus 27 ~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (513)
++....+|.+.|+++.||.++++||+|+.|..+++|++...-.. +-|. . ..+.+|.
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~---------------k~~K--P-I~~~~~~------ 103 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR---------------KTPK--P-IGVMEHP------ 103 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh---------------cCCC--C-ceeccCc------
Confidence 34456789999999999999999999999999999997532110 0000 0 1122222
Q ss_pred ccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (513)
Q Consensus 107 ~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 186 (513)
|...|.|++| ...+..+++|..+++|.+.|+++.+.+.++...
T Consensus 104 ----H~SNIF~L~F--~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~------------------------------- 146 (609)
T KOG4227|consen 104 ----HRSNIFSLEF--DLENRFLYSGERWGTVIKHDIETKQSIYVANEN------------------------------- 146 (609)
T ss_pred ----cccceEEEEE--ccCCeeEecCCCcceeEeeecccceeeeeeccc-------------------------------
Confidence 1278999999 556679999999999999999987654432211
Q ss_pred ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcc
Q 010287 187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 265 (513)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~ 265 (513)
...+.|..+..+|..+.|++. .++.|.+||.+....
T Consensus 147 -------------------------------------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~ 183 (609)
T KOG4227|consen 147 -------------------------------------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN 183 (609)
T ss_pred -------------------------------------------CcccceeecccCCCCceEEEEecCceEEEEeccCCCC
Confidence 122468899999988888887 799999999986553
Q ss_pred eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287 266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 345 (513)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 345 (513)
...++ .+........++.|+|..+.+|++.+..+-+.+||.+..... +....+... +.......++
T Consensus 184 ~~~~~-----~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~---~~~~~~~~~------L~~~~~~~M~ 249 (609)
T KOG4227|consen 184 PISLV-----LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP---VYQRSMFKG------LPQENTEWMG 249 (609)
T ss_pred CCcee-----eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccch---HHhhhcccc------Ccccchhhhh
Confidence 33322 222334567899999999999999999999999998865421 111111110 1111123577
Q ss_pred EEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEE
Q 010287 346 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 424 (513)
Q Consensus 346 i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 424 (513)
+.|+|+|..+.+--. ..-.+||+.+..-++..+. |... . .+.... +-+++|..|-. +++|+.+=.|++|
T Consensus 250 ~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~--G---Y~N~~T---~KS~~F~~D~~-v~tGSD~~~i~~W 319 (609)
T KOG4227|consen 250 SLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPN--G---YCNIKT---IKSMTFIDDYT-VATGSDHWGIHIW 319 (609)
T ss_pred eeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCC--c---ceeeee---eeeeeeeccee-eeccCcccceEEE
Confidence 899999988777443 4445678774222222222 1110 0 011111 23788886654 8999999999999
Q ss_pred ecCCC----------------------CccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 425 GCSEG----------------------SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 425 d~~~~----------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.+... .....++++|..-++.+.|+|....|++.+....++|
T Consensus 320 klP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~Kl 383 (609)
T KOG4227|consen 320 KLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKL 383 (609)
T ss_pred ecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheec
Confidence 87542 1233677899999999999999999999999999999
No 162
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3e-19 Score=167.98 Aligned_cols=408 Identities=14% Similarity=0.154 Sum_probs=241.9
Q ss_pred EEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEE
Q 010287 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (513)
Q Consensus 40 ~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~ 119 (513)
...||+|+++++.... ..|.||...+++.+ +.+.+|. .++..+.
T Consensus 21 ~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i-----------------------~~l~~~~------------a~l~s~~ 64 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCTG-NFVKVYSTATGECI-----------------------TSLEDHT------------APLTSVI 64 (792)
T ss_pred ccccccCCcEEEEeeC-CEEEEEecchHhhh-----------------------hhccccc------------Cccceee
Confidence 3468999998887664 48999999988864 5678888 8899999
Q ss_pred EeecCCC-ceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCC------C-CcccCcccccC-----ceeccCCCcc
Q 010287 120 WCQSANS-ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGN------G-PIFGSHVSAIP-----KSYMANGGCG 186 (513)
Q Consensus 120 ~~~~~~~-~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~-----~~~~~~g~~~ 186 (513)
+.|.... .++++++.||.|++||...+.+...+....+....... . ........... ...+-.++..
T Consensus 65 ~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~ 144 (792)
T KOG1963|consen 65 VLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRF 144 (792)
T ss_pred ecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeee
Confidence 9886554 57788999999999999999887776655443110000 0 00000000000 0000011111
Q ss_pred ccc-cCCCC----------CCCCcCCC-------CCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEE
Q 010287 187 ERN-FGCAS----------NDSSFPPG-------GVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 248 (513)
Q Consensus 187 ~~~-~~~~~----------~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 248 (513)
.+. ..... ..+..... -...+.+|.+.... .....+.....|...+++.+++|++++++
T Consensus 145 ~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~---~~~~~~~~~~~Htf~~t~~~~spn~~~~A 221 (792)
T KOG1963|consen 145 VLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHT---KHTSSRDITVHHTFNITCVALSPNERYLA 221 (792)
T ss_pred EeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccc---eeeccchhhhhhcccceeEEeccccceEE
Confidence 000 00000 01111111 11223333332211 11111112245677789999999999999
Q ss_pred EE-cCCeEEEEEcCC-CcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecc
Q 010287 249 SA-DDLRINLWNLEI-SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 326 (513)
Q Consensus 249 s~-~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 326 (513)
+| .||+|.+|.--. ..... .+..+..|...|++++|+++| .+|++|+..+-+.+|.+.+++. +
T Consensus 222 a~d~dGrI~vw~d~~~~~~~~-----t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k--q------- 286 (792)
T KOG1963|consen 222 AGDSDGRILVWRDFGSSDDSE-----TCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK--Q------- 286 (792)
T ss_pred EeccCCcEEEEeccccccccc-----cceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc--c-------
Confidence 99 699999996432 11111 123567899999999999999 9999999999999999988763 1
Q ss_pred ccCCCCccccccccccEEEEEEeecCCEEEE-EeCCeEEEEEccCCCCCeeeeec-------------------------
Q 010287 327 QEAPGTRSFFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQV------------------------- 380 (513)
Q Consensus 327 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~~~~v~iwd~~~~~~~~~~~~~------------------------- 380 (513)
++....++|..+.+|||+.+.+. ..|..|.+-.... .....++.+
T Consensus 287 --------fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d-l~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~ 357 (792)
T KOG1963|consen 287 --------FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD-LEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRT 357 (792)
T ss_pred --------cccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc-hhhhhhccCccCCCccccccccccceeEEEcCCC
Confidence 12333478999999999987776 4567888776532 211111111
Q ss_pred -------ccccccccccccccCCc------------------cceeeEEEeCCCCEEEEEe--------CC--CcEEEEe
Q 010287 381 -------HEHLRPKLCDLYENDSI------------------FDKFECCLSGDGGRVATGS--------YS--NLFRVFG 425 (513)
Q Consensus 381 -------~~~~~~~~~~~~~~~~~------------------~~v~~~~~s~~~~~l~~~~--------~d--g~i~vwd 425 (513)
|.+.+ ...+++....+ ..++++..+-.|.+++|.- .| -.+++|-
T Consensus 358 ~~~vln~~~g~v-Q~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~ 436 (792)
T KOG1963|consen 358 NSLVLNGHPGHV-QFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQ 436 (792)
T ss_pred CceeecCCCceE-EEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEE
Confidence 11100 00011111111 1344555566677777653 12 2467776
Q ss_pred cCCCCcc--c--eeecCCCCceeEEEEc-CCCC-ceeeecCCCeEEE--e-------cCCCCCccccCCccccccCCeeE
Q 010287 426 CSEGSAE--S--TTLEASKNPMRRQVQT-PSRP-SRPLGSLSGVVRR--V-------KGADNSALDANGNAFDFSMKLLH 490 (513)
Q Consensus 426 ~~~~~~~--~--~~~~~~~~~v~~~~~~-~~~~-~l~~~~~d~~i~~--~-------~~~~~~~~~~~~~~~~~~~~i~~ 490 (513)
.....+. + .....|...+...++. +... .+++++.||.+++ . +....|.....+ . -|..+|++
T Consensus 437 ~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~-s-y~k~~i~a 514 (792)
T KOG1963|consen 437 YNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIG-S-YHKTPITA 514 (792)
T ss_pred EcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeee-c-cccCcccc
Confidence 5433221 1 2233677666655554 3333 6899999999999 1 111111100111 1 26789999
Q ss_pred EEEeCCCCEEEEEcCCcEEEEeC
Q 010287 491 LAWHPSENSIACAASNSLYMYYA 513 (513)
Q Consensus 491 ~~~sp~~~~la~~~~~~~~i~~~ 513 (513)
++|+.||..||++.++.+.+|..
T Consensus 515 ~~fs~dGslla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 515 LCFSQDGSLLAVSFDDTITIWDY 537 (792)
T ss_pred hhhcCCCcEEEEecCCEEEEecC
Confidence 99999999999999999999963
No 163
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.5e-19 Score=149.45 Aligned_cols=271 Identities=13% Similarity=0.234 Sum_probs=180.0
Q ss_pred eccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe-CCCCeEEEEEeCCCc
Q 010287 228 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSSKGS 305 (513)
Q Consensus 228 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~dg~ 305 (513)
..+|.+-|.++.|.+.|+.+++| .|++++|||.+........- ...+.|.+.|..+.|. |.-++.+|+++.|++
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T----s~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT----SSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe----eeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 46888999999999999999999 79999999986555443321 2457899999999995 443489999999999
Q ss_pred EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee--cCCEEEEEe-CCeEEEEEccCCCCCeeeeeccc
Q 010287 306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR--NGRHILSRD-YMTLKLWDINMDSGPVATFQVHE 382 (513)
Q Consensus 306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp--~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~ 382 (513)
+.||.-...... ..-+.+. .+..+...++.|++|.|.| -|-.|++++ ||.++||+...... +.......
T Consensus 85 v~iWEE~~~~~~-~~~~~Wv------~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n-Ls~W~Lq~ 156 (361)
T KOG2445|consen 85 VSIWEEQEKSEE-AHGRRWV------RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN-LSQWTLQH 156 (361)
T ss_pred eeeeeecccccc-cccceeE------EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc-cccchhhh
Confidence 999975321110 0011111 1112344557899999999 466777765 59999999764222 22111111
Q ss_pred ccccccccccccCCccceeeEEEeCC---CCEEEEEeCC-----CcEEEEecCCCCc---cceeecCCCCceeEEEEcCC
Q 010287 383 HLRPKLCDLYENDSIFDKFECCLSGD---GGRVATGSYS-----NLFRVFGCSEGSA---ESTTLEASKNPMRRQVQTPS 451 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d-----g~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~ 451 (513)
....-+. ..........++.|+|. .++|+.|+.+ +.++||....... ...++..|..||+.++|.|+
T Consensus 157 Ei~~~~~--pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 157 EIQNVID--PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhccC--CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 1000000 00011122347889874 3578888866 5789998766542 23677799999999999997
Q ss_pred C----CceeeecCCCeEEEecCCC----------CC-------ccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEE
Q 010287 452 R----PSRPLGSLSGVVRRVKGAD----------NS-------ALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLY 509 (513)
Q Consensus 452 ~----~~l~~~~~d~~i~~~~~~~----------~~-------~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~ 509 (513)
- ..||+++.|| |+|.+-.. .. ..+.....-+|.+.|..+.|+-.|..|++.+ |+.++
T Consensus 235 ~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VR 313 (361)
T KOG2445|consen 235 IGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVR 313 (361)
T ss_pred cCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceee
Confidence 4 3789999999 88811110 00 0011222336899999999999999999655 77778
Q ss_pred EEeC
Q 010287 510 MYYA 513 (513)
Q Consensus 510 i~~~ 513 (513)
+|.|
T Consensus 314 LWka 317 (361)
T KOG2445|consen 314 LWKA 317 (361)
T ss_pred ehhh
Confidence 8764
No 164
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=5.1e-20 Score=167.53 Aligned_cols=270 Identities=14% Similarity=0.226 Sum_probs=201.5
Q ss_pred cEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccce
Q 010287 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (513)
Q Consensus 37 ~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~ 116 (513)
.|..++|-|||..|+.+..+ ++.|||..++... ..+.+|. +.|+
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~ll-----------------------qtLKgHK------------DtVy 57 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLL-----------------------QPLKGHK------------DTVY 57 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccc-----------------------ccccccc------------ceEE
Confidence 89999999999887776544 7999999887753 6789999 9999
Q ss_pred eEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCC
Q 010287 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (513)
Q Consensus 117 ~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 196 (513)
+++| +.||..+++|+.|+.|.+|+-+-.-..
T Consensus 58 cVAy--s~dGkrFASG~aDK~VI~W~~klEG~L----------------------------------------------- 88 (1081)
T KOG1538|consen 58 CVAY--AKDGKRFASGSADKSVIIWTSKLEGIL----------------------------------------------- 88 (1081)
T ss_pred EEEE--ccCCceeccCCCceeEEEeccccccee-----------------------------------------------
Confidence 9999 669999999999999999986532111
Q ss_pred CCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccc
Q 010287 197 SSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPAN 276 (513)
Q Consensus 197 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~ 276 (513)
-..|.+.|.|+.|+|-...|++++=...-+|..+... ..+
T Consensus 89 -------------------------------kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~-V~K-------- 128 (1081)
T KOG1538|consen 89 -------------------------------KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS-VSK-------- 128 (1081)
T ss_pred -------------------------------eeccCCeeeEeecCchHHHhhhcchhhccccChhhhh-HHh--------
Confidence 1478888999999999999999854556689876322 111
Q ss_pred cccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC----
Q 010287 277 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG---- 352 (513)
Q Consensus 277 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~---- 352 (513)
......+.+++|..|| ++++.|-.+|+|.+-+- +++.. . .++.+ .+..++|.+++|+|..
T Consensus 129 -~kss~R~~~CsWtnDG-qylalG~~nGTIsiRNk-~gEek---~-~I~Rp---------gg~Nspiwsi~~~p~sg~G~ 192 (1081)
T KOG1538|consen 129 -HKSSSRIICCSWTNDG-QYLALGMFNGTISIRNK-NGEEK---V-KIERP---------GGSNSPIWSICWNPSSGEGR 192 (1081)
T ss_pred -hhhheeEEEeeecCCC-cEEEEeccCceEEeecC-CCCcc---e-EEeCC---------CCCCCCceEEEecCCCCCCc
Confidence 1234678899999999 99999999999998753 33321 1 11111 1223689999999942
Q ss_pred -CEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287 353 -RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 430 (513)
Q Consensus 353 -~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 430 (513)
..+++.+. .++.+|.+. ++.+..-+.-.- +-.++.+-++|.++..|+.|+.+.+|..+ +
T Consensus 193 ~di~aV~DW~qTLSFy~Ls--G~~Igk~r~L~F---------------dP~CisYf~NGEy~LiGGsdk~L~~fTR~--G 253 (1081)
T KOG1538|consen 193 NDILAVADWGQTLSFYQLS--GKQIGKDRALNF---------------DPCCISYFTNGEYILLGGSDKQLSLFTRD--G 253 (1081)
T ss_pred cceEEEEeccceeEEEEec--ceeecccccCCC---------------CchhheeccCCcEEEEccCCCceEEEeec--C
Confidence 35556665 778888776 444331111100 01278889999999999999999999765 3
Q ss_pred ccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 431 AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 431 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
-.+-++.....+++.++..|++++++.|..||+|.-
T Consensus 254 vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiAC 289 (1081)
T KOG1538|consen 254 VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIAC 289 (1081)
T ss_pred eEEeeccccceeEEEEEEccCCceEEEEEccCeeeh
Confidence 455666667788999999999999999999999876
No 165
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3.8e-20 Score=160.46 Aligned_cols=258 Identities=16% Similarity=0.215 Sum_probs=172.0
Q ss_pred CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeecCCC
Q 010287 47 GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126 (513)
Q Consensus 47 g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~ 126 (513)
|+|+|.|+-|..|.|||+.-...+..+ -.|-....... ....+-...-.+|+ ++|.++.|+.. ..
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~-~~LGs~~sk~~-~k~~k~~~~~~gHT------------davl~Ls~n~~-~~ 256 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPC-VTLGSKASKKK-KKKGKRSNSASGHT------------DAVLALSWNRN-FR 256 (463)
T ss_pred cceEEEeccCceeEEeccccccccccc-eeechhhhhhh-hhhcccccccccch------------HHHHHHHhccc-cc
Confidence 679999999999999997532211000 00000000000 00000011234576 89999999742 34
Q ss_pred ceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCc
Q 010287 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (513)
Q Consensus 127 ~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 206 (513)
+.|++||.|.+|++||+.++++..+.
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~------------------------------------------------------ 282 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSI------------------------------------------------------ 282 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceeh------------------------------------------------------
Confidence 58999999999999999999866542
Q ss_pred eeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCe
Q 010287 207 LRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 284 (513)
Q Consensus 207 i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i 284 (513)
..|.+.|.++.|+|. ...|++| .|+++.+.|.+........+ ...+.|
T Consensus 283 ----------------------~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w--------k~~g~V 332 (463)
T KOG0270|consen 283 ----------------------THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW--------KFDGEV 332 (463)
T ss_pred ----------------------hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE--------Eeccce
Confidence 356678999999994 6778888 69999999999533322111 135779
Q ss_pred EEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCE-EEEEe-CCe
Q 010287 285 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH-ILSRD-YMT 362 (513)
Q Consensus 285 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-l~~~~-~~~ 362 (513)
-.++|+|.....++++..||.++-+|+|+.. +++.+ ++.|.++|.++++++.-.. +++++ ++.
T Consensus 333 Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~---~~vwt------------~~AHd~~ISgl~~n~~~p~~l~t~s~d~~ 397 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVSTDDGTVYYFDIRNPG---KPVWT------------LKAHDDEISGLSVNIQTPGLLSTASTDKV 397 (463)
T ss_pred EEEEecCCCceeEEEecCCceEEeeecCCCC---CceeE------------EEeccCCcceEEecCCCCcceeeccccce
Confidence 9999999988899999999999999999864 22333 4556689999999986654 44554 599
Q ss_pred EEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC-EEEEEeCCCcEEEEecCCCCcc
Q 010287 363 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRVFGCSEGSAE 432 (513)
Q Consensus 363 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~ 432 (513)
|++|++.. ..+ .....|.-....+ .+.++.|+-. +|+.|+..+.++|||+.+....
T Consensus 398 Vklw~~~~-~~~-~~v~~~~~~~~rl------------~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 398 VKLWKFDV-DSP-KSVKEHSFKLGRL------------HCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EEEEeecC-CCC-cccccccccccce------------eecccCCCcceEEEecCccceEEEeecccChhH
Confidence 99999974 222 2222222211111 1555666544 5678888889999999877443
No 166
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.85 E-value=9.3e-20 Score=158.60 Aligned_cols=251 Identities=16% Similarity=0.199 Sum_probs=184.3
Q ss_pred ccccCCeEEEEeccCC--CEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287 229 HAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 305 (513)
Q Consensus 229 ~~h~~~v~~~~~~~~~--~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 305 (513)
.-+..+|.+++|+|.. +++++| -.|.|-+||+.+.+....-+ ..+..|..+|.++.|+|.....+++.+.||+
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v----~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV----YLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce----EEeccCCccccceEecCCChhheeeeccCce
Confidence 5677889999999964 466667 48999999996433222110 1457799999999999998889999999999
Q ss_pred EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccc
Q 010287 306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL 384 (513)
Q Consensus 306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~ 384 (513)
|++-|+..+... .+...+.. ...+.++.|+.+...++.++. |...+||+++++.....+..|...
T Consensus 259 iR~~D~~~~i~e--~v~s~~~d------------~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK 324 (498)
T KOG4328|consen 259 IRLQDFEGNISE--EVLSLDTD------------NIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK 324 (498)
T ss_pred eeeeeecchhhH--HHhhcCcc------------ceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc
Confidence 999999875431 12222111 146788889888888888877 999999999977777778777764
Q ss_pred ccccccccccCCccceeeEEEeCCCC-EEEEEeCCCcEEEEecCCCCcc---ceeecCCCCceeEEEEcCCCCceeeecC
Q 010287 385 RPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRVFGCSEGSAE---STTLEASKNPMRRQVQTPSRPSRPLGSL 460 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 460 (513)
|..++++|... +|+|++.|++.+|||++.-... ....-.|..+|.+..|||++..|++-+.
T Consensus 325 ---------------I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~ 389 (498)
T KOG4328|consen 325 ---------------ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ 389 (498)
T ss_pred ---------------cceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc
Confidence 45899999765 6889999999999999864322 2445589999999999999999999999
Q ss_pred CCeEEEecCCCCCccccCCcccccc----C--CeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 461 SGVVRRVKGADNSALDANGNAFDFS----M--KLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 461 d~~i~~~~~~~~~~~~~~~~~~~~~----~--~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
|..|++..+............+.|. . .+...+|.|+..++++|. ...|-||+
T Consensus 390 D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 390 DNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred CCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 9999995442111101111111222 2 245668999999999887 55566664
No 167
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=2.3e-20 Score=155.63 Aligned_cols=257 Identities=16% Similarity=0.251 Sum_probs=181.7
Q ss_pred cccccEEEEEEcCC----CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287 33 QEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (513)
Q Consensus 33 ~h~~~V~~v~~sp~----g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (513)
.|......++|+-+ ..++|.|+.-|.|+|.|...++. ...+.+|.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~-----------------------~~~~~ghG-------- 135 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC-----------------------SKNYRGHG-------- 135 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh-----------------------ccceeccC--------
Confidence 46677788888764 45899999999999999877663 36678888
Q ss_pred ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (513)
Q Consensus 109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 188 (513)
..|+.|.|+|.. .++++++|.|.+||+|++++..+..++..
T Consensus 136 ----~sINeik~~p~~-~qlvls~SkD~svRlwnI~~~~Cv~VfGG---------------------------------- 176 (385)
T KOG1034|consen 136 ----GSINEIKFHPDR-PQLVLSASKDHSVRLWNIQTDVCVAVFGG---------------------------------- 176 (385)
T ss_pred ----ccchhhhcCCCC-CcEEEEecCCceEEEEeccCCeEEEEecc----------------------------------
Confidence 889999999854 36899999999999999999988776431
Q ss_pred ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287 189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 267 (513)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~ 267 (513)
..+|.+.|.++.|+.++.+|+++ .|.+|++|++...+..-
T Consensus 177 ---------------------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~ 217 (385)
T KOG1034|consen 177 ---------------------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKN 217 (385)
T ss_pred ---------------------------------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhh
Confidence 36899999999999999999998 69999999998432110
Q ss_pred ee---cc--cC-------------c--cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC-cccc---------
Q 010287 268 NI---VD--VK-------------P--ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALC--------- 317 (513)
Q Consensus 268 ~~---~~--~~-------------~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~--------- 317 (513)
.+ +. .+ | .+-.-|...|-|+.|-- .++++=+-++.|..|..-. .+..
T Consensus 218 ~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~ 294 (385)
T KOG1034|consen 218 KLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESA 294 (385)
T ss_pred hhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccc
Confidence 00 00 00 0 01234666667777754 5788888899999998721 1110
Q ss_pred cccceeeccccCCCCccccccccccEEEEE--EeecCCEEEEEeC-CeEEEEEccCCCCCe--eeeeccccccccccccc
Q 010287 318 DTHSKLFEEQEAPGTRSFFTEIIASISDIK--FARNGRHILSRDY-MTLKLWDINMDSGPV--ATFQVHEHLRPKLCDLY 392 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~sp~~~~l~~~~~-~~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~ 392 (513)
...+..++-+ ...|+-+. |.|-++.||.|.. |.|.+||++. .++. .++..+..
T Consensus 295 ~Ti~~~~~~~------------~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~-~ep~~~ttl~~s~~--------- 352 (385)
T KOG1034|consen 295 TTILGEFDYP------------MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDN-NEPPKCTTLTHSKS--------- 352 (385)
T ss_pred eeeeeEeccC------------ccceEEEEEeecHHHHHHhhccCCCcEEEEECCC-CCCccCceEEeccc---------
Confidence 0001111111 13455554 4577899999887 9999999997 4332 12221111
Q ss_pred ccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287 393 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 427 (513)
Q Consensus 393 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 427 (513)
-..|...+|+.|+.+|+...+|+.|.-||..
T Consensus 353 ----~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 353 ----GSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ----cceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 1124488999999999999999999999854
No 168
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.4e-20 Score=180.09 Aligned_cols=298 Identities=14% Similarity=0.129 Sum_probs=202.5
Q ss_pred CceeccCCCcc-ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCE----EEEE
Q 010287 176 PKSYMANGGCG-ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET----FISA 250 (513)
Q Consensus 176 ~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----l~s~ 250 (513)
.++|+|++..+ .........|..| +.+.++.+|.++............ ........+.++|.+.+.. |+.|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sf--st~~slEifeld~~~~~~dlk~~~--s~~s~~rF~kL~W~~~g~~~~GlIaGG 86 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASF--STSASLEIFELDFSDESSDLKPVG--SLQSSNRFNKLAWGSYGSHSHGLIAGG 86 (1049)
T ss_pred eEEecCCCchhhHHHhhhhcccccc--ccccccceeeecccCccccccccc--cccccccceeeeecccCCCccceeecc
Confidence 55788887422 1111111222223 445666666664433321111111 1123355789999887665 6666
Q ss_pred -cCCeEEEEEcCCC--cceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287 251 -DDLRINLWNLEIS--NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 327 (513)
Q Consensus 251 -~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 327 (513)
+||.|.+||...- .....++ .....|.+.|..+.|++..++++|+|+.||.|.|||+.+.+.. ..+...
T Consensus 87 ~edG~I~ly~p~~~~~~~~~~~l----a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP----~~~~~~ 158 (1049)
T KOG0307|consen 87 LEDGNIVLYDPASIIANASEEVL----ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP----FTPGSQ 158 (1049)
T ss_pred ccCCceEEecchhhccCcchHHH----hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC----CCCCCC
Confidence 7999999998752 2222221 2557899999999999998789999999999999999874432 111111
Q ss_pred cCCCCccccccccccEEEEEEeec-CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEE
Q 010287 328 EAPGTRSFFTEIIASISDIKFARN-GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 405 (513)
Q Consensus 328 ~~~~~~~~~~~~~~~v~~i~~sp~-~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (513)
. ..+.|.+++|+.. .+.|++++. |.+.|||++. .+++-.+..+.... .+..++|
T Consensus 159 ~----------~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~-~~pii~ls~~~~~~-------------~~S~l~W 214 (1049)
T KOG0307|consen 159 A----------PPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK-KKPIIKLSDTPGRM-------------HCSVLAW 214 (1049)
T ss_pred C----------CcccceEeccchhhhHHhhccCCCCCceeccccC-CCcccccccCCCcc-------------ceeeeee
Confidence 1 1257999999985 456666776 8999999996 56666665554321 1347999
Q ss_pred eCCCC-EEEEEeCC---CcEEEEecCCCCccceeecCCCCceeEEEEcCCC-CceeeecCCCeEEEecCCCCCccccCCc
Q 010287 406 SGDGG-RVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVVRRVKGADNSALDANGN 480 (513)
Q Consensus 406 s~~~~-~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~ 480 (513)
+|+.- .|++++.| -.|.+||++......+++++|...+.++.|++.+ .+|++++.|+.|.. |.....+....
T Consensus 215 hP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~---wN~~tgEvl~~ 291 (1049)
T KOG0307|consen 215 HPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIIC---WNPNTGEVLGE 291 (1049)
T ss_pred CCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeE---ecCCCceEeee
Confidence 99874 45666654 3699999998767778889999999999999887 88999999999999 55554444444
Q ss_pred cccccCCeeEEEEeCCCC-EEEEEc-CCcEEEEe
Q 010287 481 AFDFSMKLLHLAWHPSEN-SIACAA-SNSLYMYY 512 (513)
Q Consensus 481 ~~~~~~~i~~~~~sp~~~-~la~~~-~~~~~i~~ 512 (513)
.-.-...+..+.|+|... .+|+++ ++.|-||+
T Consensus 292 ~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 292 LPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred cCCCCcceeeeeecCCCcchhhhheeccceeeee
Confidence 334467799999999987 666666 77777775
No 169
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=4.7e-19 Score=151.39 Aligned_cols=293 Identities=18% Similarity=0.307 Sum_probs=194.2
Q ss_pred cccceeccccccccccccccEEEEEEcC-----CCCEEEee---cCCCcEEEEEee-CCCCCCCccCccccccccccCCC
Q 010287 18 KFSQVFGERTAGEEVQEVDIISAIEFDK-----SGDHLATG---DRGGRVVLFERT-DTRDNGGQRRDLEMMDYSMSRHP 88 (513)
Q Consensus 18 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp-----~g~~latg---~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~ 88 (513)
++..+||+..+.+..-..=.|+-+.|.. +.++||.- +..|...+.=+. +++. +
T Consensus 10 KfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~-----------d------- 71 (472)
T KOG0303|consen 10 KFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRM-----------D------- 71 (472)
T ss_pred hhHHHhccccchhhhhcceeeeeeeccccccccCCceEEEEEecCCCcceeeccccccccc-----------C-------
Confidence 4567788887766666666788888764 24555532 122222222211 1110 0
Q ss_pred cceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcc
Q 010287 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (513)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (513)
.-+-.+.||+ ++|..++|+|.+| ..+++||.|.+|.||++-.+.+.....
T Consensus 72 --~~~P~v~GHt------------~~vLDi~w~PfnD-~vIASgSeD~~v~vW~IPe~~l~~~lt--------------- 121 (472)
T KOG0303|consen 72 --ASYPLVCGHT------------APVLDIDWCPFND-CVIASGSEDTKVMVWQIPENGLTRDLT--------------- 121 (472)
T ss_pred --CCCCCccCcc------------ccccccccCccCC-ceeecCCCCceEEEEECCCcccccCcc---------------
Confidence 0112367898 9999999999655 689999999999999997654322111
Q ss_pred cCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CCEE
Q 010287 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETF 247 (513)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l 247 (513)
.....+.+|...|--++|+|. .+.|
T Consensus 122 ------------------------------------------------------epvv~L~gH~rrVg~V~wHPtA~NVL 147 (472)
T KOG0303|consen 122 ------------------------------------------------------EPVVELYGHQRRVGLVQWHPTAPNVL 147 (472)
T ss_pred ------------------------------------------------------cceEEEeecceeEEEEeecccchhhH
Confidence 011236799999999999996 4556
Q ss_pred EEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecc
Q 010287 248 ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 326 (513)
Q Consensus 248 ~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 326 (513)
+++ .|.+|.+|++.++...++ +. |.+-|.++.|+.+| .+|++.+.|..|+|||.+++...... ..
T Consensus 148 lsag~Dn~v~iWnv~tgeali~--------l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~----~~ 213 (472)
T KOG0303|consen 148 LSAGSDNTVSIWNVGTGEALIT--------LD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEG----VA 213 (472)
T ss_pred hhccCCceEEEEeccCCceeee--------cC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeec----cc
Confidence 666 799999999999887764 33 99999999999999 99999999999999999998874331 22
Q ss_pred ccCCCCccccccccccEEEEEEeecCCEEEEE----eCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceee
Q 010287 327 QEAPGTRSFFTEIIASISDIKFARNGRHILSR----DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 402 (513)
Q Consensus 327 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~----~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (513)
++. ..-..+.|-.+|.++.+| ++..+-+||..+-.+++......... +|.-
T Consensus 214 heG-----------~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn--------------Gvl~ 268 (472)
T KOG0303|consen 214 HEG-----------AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN--------------GVLL 268 (472)
T ss_pred ccC-----------CCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCC--------------ceEE
Confidence 221 123445677788866565 34889999987644554332222211 1223
Q ss_pred EEEeCCCCEEEE-EeCCCcEEEEecCCCCccceeec--CCCCceeEEEEcCC
Q 010287 403 CCLSGDGGRVAT-GSYSNLFRVFGCSEGSAESTTLE--ASKNPMRRQVQTPS 451 (513)
Q Consensus 403 ~~~s~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~ 451 (513)
--|.+|.++++. |-.|+.|+.|.+.....-+..+. ....|-+.+.+-|.
T Consensus 269 PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 269 PFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred eeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence 456788888775 44799999999987643343333 23445556666554
No 170
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=6.5e-19 Score=152.89 Aligned_cols=198 Identities=17% Similarity=0.273 Sum_probs=149.7
Q ss_pred eccccCCeEEEEeccC-CCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287 228 AHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 305 (513)
Q Consensus 228 ~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 305 (513)
..+|++.|..++|+.. ...|++| .|.+|++||+.+++... .+..|...|.+++|+|..+..|++|+.|++
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~--------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~ 310 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS--------SITHHGKKVQTLEWHPYEPSVLLSGSYDGT 310 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce--------ehhhcCCceeEEEecCCCceEEEeccccce
Confidence 3589999999999886 4566777 69999999999887543 456789999999999999999999999999
Q ss_pred EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC-EEEEEeC-CeEEEEEccCCCCCeeeeecccc
Q 010287 306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEH 383 (513)
Q Consensus 306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~ 383 (513)
|.+.|+|..... -..|+. .+.|-.++|.|... .++++.+ |+|+-+|++..++++.+++.|..
T Consensus 311 V~l~D~R~~~~s---~~~wk~-------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~ 374 (463)
T KOG0270|consen 311 VALKDCRDPSNS---GKEWKF-------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD 374 (463)
T ss_pred EEeeeccCcccc---CceEEe-------------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC
Confidence 999999953221 122222 15799999999654 4445555 99999999998899999999998
Q ss_pred cccccccccccCCccceeeEEEeCCC-CEEEEEeCCCcEEEEecCCCCccceeecCCC---CceeEEEEcCCCC-ceeee
Q 010287 384 LRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEASK---NPMRRQVQTPSRP-SRPLG 458 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~-~l~~~ 458 (513)
.+ .++++++.- .+|+|++.|+.|++|++...... ....|. +...+.++.|+-. ++|.|
T Consensus 375 ~I---------------Sgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~--~v~~~~~~~~rl~c~~~~~~~a~~la~G 437 (463)
T KOG0270|consen 375 EI---------------SGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK--SVKEHSFKLGRLHCFALDPDVAFTLAFG 437 (463)
T ss_pred Cc---------------ceEEecCCCCcceeeccccceEEEEeecCCCCc--ccccccccccceeecccCCCcceEEEec
Confidence 74 478888754 46789999999999998754322 112222 1244556666655 56788
Q ss_pred cCCCeEEE
Q 010287 459 SLSGVVRR 466 (513)
Q Consensus 459 ~~d~~i~~ 466 (513)
+..+.+++
T Consensus 438 G~k~~~~v 445 (463)
T KOG0270|consen 438 GEKAVLRV 445 (463)
T ss_pred CccceEEE
Confidence 88887887
No 171
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=6.6e-19 Score=144.37 Aligned_cols=277 Identities=13% Similarity=0.156 Sum_probs=185.6
Q ss_pred CCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CCEEEEE-c---C----CeEEEEEcCCCcceeeecccC
Q 010287 203 GVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-D---D----LRINLWNLEISNQSFNIVDVK 273 (513)
Q Consensus 203 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~---d----~~i~vwd~~~~~~~~~~~~~~ 273 (513)
.++.+.+.++......... ..+..|.+.|+.++-+|- .+.|+++ . | ..+-||.+.......+.....
T Consensus 38 ~dNqVhll~~d~e~s~l~s----kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE 113 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLS----KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLE 113 (370)
T ss_pred CcceeEEEEecCccchhhh----hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhh
Confidence 3456666666554432221 124567889999999995 5556655 2 2 346799887543321110000
Q ss_pred c-cccc-cccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-
Q 010287 274 P-ANME-DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR- 350 (513)
Q Consensus 274 ~-~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp- 350 (513)
. ..+. .+-+.|.|+.|.|++ ..+++- .|..|.+|++..+..... .+.... -.++....++-+|+|
T Consensus 114 ~v~~Ldteavg~i~cvew~Pns-~klasm-~dn~i~l~~l~ess~~va---ev~ss~-------s~e~~~~ftsg~WspH 181 (370)
T KOG1007|consen 114 CVASLDTEAVGKINCVEWEPNS-DKLASM-DDNNIVLWSLDESSKIVA---EVLSSE-------SAEMRHSFTSGAWSPH 181 (370)
T ss_pred HhhcCCHHHhCceeeEEEcCCC-CeeEEe-ccCceEEEEcccCcchhe---eecccc-------cccccceecccccCCC
Confidence 0 1222 344689999999998 666654 489999999987765221 111111 122445688889999
Q ss_pred -cCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC-EEEEEeCCCcEEEEecCC
Q 010287 351 -NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRVFGCSE 428 (513)
Q Consensus 351 -~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~ 428 (513)
++..+++.+++++..||+++..+....-..|... |..+.|+|+.+ +|++|++||.|++||.+.
T Consensus 182 Hdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~---------------vrdlDfNpnkq~~lvt~gDdgyvriWD~R~ 246 (370)
T KOG1007|consen 182 HDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQR---------------VRDLDFNPNKQHILVTCGDDGYVRIWDTRK 246 (370)
T ss_pred CccceEEEeCCCcEEEEEccchhhhcchhhhhcce---------------eeeccCCCCceEEEEEcCCCccEEEEeccC
Confidence 8899999999999999999733333334455544 34899999876 577999999999999998
Q ss_pred CCccceeecCCCCceeEEEEcCCC-CceeeecCCCeEEE-----ec-------CCCC--------------CccccCCcc
Q 010287 429 GSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVVRR-----VK-------GADN--------------SALDANGNA 481 (513)
Q Consensus 429 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~-----~~-------~~~~--------------~~~~~~~~~ 481 (513)
.+..+..+.+|.-.|.++.|.|.. +++++|+.|..|.+ .. +.+. ...-+....
T Consensus 247 tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty 326 (370)
T KOG1007|consen 247 TKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY 326 (370)
T ss_pred CCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc
Confidence 877889999999999999999875 57789999999988 10 0000 000111233
Q ss_pred ccccCCeeEEEEeCCCCEEE-EEc-CCcEEE
Q 010287 482 FDFSMKLLHLAWHPSENSIA-CAA-SNSLYM 510 (513)
Q Consensus 482 ~~~~~~i~~~~~sp~~~~la-~~~-~~~~~i 510 (513)
-+|...|++++||.-..++. +-+ ++.++|
T Consensus 327 dehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 327 DEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred cccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 36899999999999998865 555 555554
No 172
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2e-18 Score=138.06 Aligned_cols=299 Identities=14% Similarity=0.138 Sum_probs=189.4
Q ss_pred ccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (513)
Q Consensus 36 ~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 115 (513)
..|.+-+++|.+++|+.|+.+|.|.+..+...... ....|.......+++|+ .+|
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~-------------sa~~~gk~~iv~eqahd------------gpi 65 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG-------------SAEPPGKLKIVPEQAHD------------GPI 65 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc-------------ccCCCCCcceeeccccC------------CCe
Confidence 35666789999999999999999999997643321 01111222333458888 999
Q ss_pred eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCC
Q 010287 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (513)
Q Consensus 116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 195 (513)
+.++|. +.+|++++ ||.|+=|..+.......
T Consensus 66 y~~~f~----d~~Lls~g-dG~V~gw~W~E~~es~~-------------------------------------------- 96 (325)
T KOG0649|consen 66 YYLAFH----DDFLLSGG-DGLVYGWEWNEEEESLA-------------------------------------------- 96 (325)
T ss_pred eeeeee----hhheeecc-CceEEEeeehhhhhhcc--------------------------------------------
Confidence 999994 23566554 59999998875432100
Q ss_pred CCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEE-EcCCeEEEEEcCCCcceeeecccCc
Q 010287 196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-ADDLRINLWNLEISNQSFNIVDVKP 274 (513)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~d~~i~vwd~~~~~~~~~~~~~~~ 274 (513)
.-++|.+..... .- ...-..|+++...|..+-++. |.|+.++-||+++++...
T Consensus 97 ----------~K~lwe~~~P~~--------~~-~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r------- 150 (325)
T KOG0649|consen 97 ----------TKRLWEVKIPMQ--------VD-AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR------- 150 (325)
T ss_pred ----------chhhhhhcCccc--------cC-cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE-------
Confidence 001121111000 00 011134888988986555555 589999999999876543
Q ss_pred cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccc-cccEEEEEEeecCC
Q 010287 275 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI-IASISDIKFARNGR 353 (513)
Q Consensus 275 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~sp~~~ 353 (513)
.+++|++.|.++.--... ..+++|++||++|+||+++++. +.+++....+.. +..| ..+|.+++. +..
T Consensus 151 -~~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~----v~~ie~yk~~~~---lRp~~g~wigala~--~ed 219 (325)
T KOG0649|consen 151 -EYRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKH----VSMIEPYKNPNL---LRPDWGKWIGALAV--NED 219 (325)
T ss_pred -EEcCCcceeeeeeecccC-cceeecCCCccEEEEeccccce----eEEeccccChhh---cCcccCceeEEEec--cCc
Confidence 679999999999984444 5799999999999999999875 444443332211 2222 245666665 466
Q ss_pred EEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccc
Q 010287 354 HILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 433 (513)
Q Consensus 354 ~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 433 (513)
+++.|....+.+|+++. .++...+...... -.+.|..| .+++++..+.+.-|.+.. .+.
T Consensus 220 WlvCGgGp~lslwhLrs-se~t~vfpipa~v----------------~~v~F~~d--~vl~~G~g~~v~~~~l~G--vl~ 278 (325)
T KOG0649|consen 220 WLVCGGGPKLSLWHLRS-SESTCVFPIPARV----------------HLVDFVDD--CVLIGGEGNHVQSYTLNG--VLQ 278 (325)
T ss_pred eEEecCCCceeEEeccC-CCceEEEecccce----------------eEeeeecc--eEEEeccccceeeeeecc--EEE
Confidence 99998888999999997 7777776654432 25666544 677788888999998762 332
Q ss_pred eeecCCCCceeEEEEcC-CCCceeeecCCCeEEE
Q 010287 434 TTLEASKNPMRRQVQTP-SRPSRPLGSLSGVVRR 466 (513)
Q Consensus 434 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~ 466 (513)
..............++. ..++|-.++....+.+
T Consensus 279 a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i 312 (325)
T KOG0649|consen 279 ANIPVESTACYSASWQTSPIKFISIAGFSNKLHI 312 (325)
T ss_pred EeccCCccceeeecccCCceEEEEecccceeeee
Confidence 22222222223333322 2455555566666655
No 173
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=6.4e-19 Score=144.46 Aligned_cols=275 Identities=16% Similarity=0.197 Sum_probs=178.4
Q ss_pred ccccccccccEEEEEEcCC-CCEEEeecCC-------CcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCC
Q 010287 28 AGEEVQEVDIISAIEFDKS-GDHLATGDRG-------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH 99 (513)
Q Consensus 28 ~~~~~~h~~~V~~v~~sp~-g~~latg~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 99 (513)
...+..|.+.|..++-+|- .++|+|...+ ..+.||.+...... ..
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~---------------------------S~ 108 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ---------------------------SN 108 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc---------------------------cc
Confidence 3356678999999999996 4566665432 23789997544321 00
Q ss_pred CCccccccccc--ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCc
Q 010287 100 EPEFDYLKSLE--IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (513)
Q Consensus 100 ~~~~~~~~~~~--~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (513)
...++.+..|+ +-+.|.|+.|.| ++..+++-. |..|.+|+++.+..+ ...+....
T Consensus 109 ~~tlE~v~~Ldteavg~i~cvew~P--ns~klasm~-dn~i~l~~l~ess~~-vaev~ss~------------------- 165 (370)
T KOG1007|consen 109 SSTLECVASLDTEAVGKINCVEWEP--NSDKLASMD-DNNIVLWSLDESSKI-VAEVLSSE------------------- 165 (370)
T ss_pred cchhhHhhcCCHHHhCceeeEEEcC--CCCeeEEec-cCceEEEEcccCcch-heeecccc-------------------
Confidence 00011122221 226899999988 555676655 888999999887532 11111000
Q ss_pred eeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc--CCCEEEEEcCCeE
Q 010287 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISADDLRI 255 (513)
Q Consensus 178 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~d~~i 255 (513)
...|....++-+|+| +++.+++.+|+++
T Consensus 166 --------------------------------------------------s~e~~~~ftsg~WspHHdgnqv~tt~d~tl 195 (370)
T KOG1007|consen 166 --------------------------------------------------SAEMRHSFTSGAWSPHHDGNQVATTSDSTL 195 (370)
T ss_pred --------------------------------------------------cccccceecccccCCCCccceEEEeCCCcE
Confidence 012445567788998 7889999999999
Q ss_pred EEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccc
Q 010287 256 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF 335 (513)
Q Consensus 256 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (513)
..||+++..+...+ -..|...|..+.|+|+.+.+|++|+.||.|++||.|..+.. +..
T Consensus 196 ~~~D~RT~~~~~sI-------~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p---v~e------------ 253 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSI-------EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP---VQE------------ 253 (370)
T ss_pred EEEEccchhhhcch-------hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc---ccc------------
Confidence 99999987766543 25688899999999998889999999999999999875432 222
Q ss_pred cccccccEEEEEEee-cCCEEEEE-eCCeEEEEEccCCCCCeee--------eeccccc--cccccc-----c-cccCCc
Q 010287 336 FTEIIASISDIKFAR-NGRHILSR-DYMTLKLWDINMDSGPVAT--------FQVHEHL--RPKLCD-----L-YENDSI 397 (513)
Q Consensus 336 ~~~~~~~v~~i~~sp-~~~~l~~~-~~~~v~iwd~~~~~~~~~~--------~~~~~~~--~~~~~~-----~-~~~~~~ 397 (513)
+.+|.-+|+++.|+| ..++|++| +|..|.+|....-....+. ...+... ...+.+ + .+.+
T Consensus 254 l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-- 331 (370)
T KOG1007|consen 254 LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-- 331 (370)
T ss_pred cCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc--
Confidence 456778999999999 45677775 4689999986531100000 0000000 000110 0 1122
Q ss_pred cceeeEEEeCCCCE-EEEEeCCCcEEEEecC
Q 010287 398 FDKFECCLSGDGGR-VATGSYSNLFRVFGCS 427 (513)
Q Consensus 398 ~~v~~~~~s~~~~~-l~~~~~dg~i~vwd~~ 427 (513)
.|++++||.-..+ +|+-+.||.+.|=++.
T Consensus 332 -SVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 332 -SVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred -ceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 3569999987776 5577899999886654
No 174
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=6e-19 Score=146.40 Aligned_cols=238 Identities=11% Similarity=0.132 Sum_probs=164.6
Q ss_pred eEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC
Q 010287 235 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 313 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 313 (513)
..|+.|++.|.+|++| .+|.|.+||+.+.... ..+.+|..+|++++|+++| +.|++++.|..|.+||+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia--------r~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA--------RMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh--------hhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccC
Confidence 6799999999999999 8999999999876522 2568899999999999999 9999999999999999999
Q ss_pred cccccccceeeccccCCCCccccccccccEEEEEEeecCC--EEEEEeCCeEEEEEccCCCCCeeee-eccccccccccc
Q 010287 314 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR--HILSRDYMTLKLWDINMDSGPVATF-QVHEHLRPKLCD 390 (513)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~--~l~~~~~~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~ 390 (513)
|.... .+.-. ++|+.+.|+|..+ .+++--+..-.+-++.. +.+.+ ....... +.
T Consensus 97 gs~l~----rirf~-------------spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~---~~h~~Lp~d~d~d--ln- 153 (405)
T KOG1273|consen 97 GSPLK----RIRFD-------------SPVWGAQWHPRKRNKCVATIMEESPVVIDFSD---PKHSVLPKDDDGD--LN- 153 (405)
T ss_pred CCcee----EEEcc-------------CccceeeeccccCCeEEEEEecCCcEEEEecC---CceeeccCCCccc--cc-
Confidence 88532 22211 6799999999443 33332222233334331 22221 1111110 00
Q ss_pred ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCC-CceeEEEEcCCCCceeeecCCCeEEEecC
Q 010287 391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK-NPMRRQVQTPSRPSRPLGSLSGVVRRVKG 469 (513)
Q Consensus 391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~~~~ 469 (513)
-. .....|.+.|+++++|...|.+.++|..+. +....++... ..|.++.++..|+.|+....|+.||.++.
T Consensus 154 ----~s---as~~~fdr~g~yIitGtsKGkllv~~a~t~-e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~ 225 (405)
T KOG1273|consen 154 ----SS---ASHGVFDRRGKYIITGTSKGKLLVYDAETL-ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEI 225 (405)
T ss_pred ----cc---cccccccCCCCEEEEecCcceEEEEecchh-eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence 00 013358899999999999999999999987 3335555444 78889999999999999999999999444
Q ss_pred CCCCcc--ccCCc-cccc-----cCCeeEEEEeCCCCEEEEEc--CCcEEEEe
Q 010287 470 ADNSAL--DANGN-AFDF-----SMKLLHLAWHPSENSIACAA--SNSLYMYY 512 (513)
Q Consensus 470 ~~~~~~--~~~~~-~~~~-----~~~i~~~~~sp~~~~la~~~--~~~~~i~~ 512 (513)
.++... ..... .... ...=.++.||.||.+++.++ ...++||-
T Consensus 226 ~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 226 SDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWE 278 (405)
T ss_pred hhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEe
Confidence 433210 00000 0001 12336788999999998665 66788873
No 175
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.83 E-value=6.4e-19 Score=142.62 Aligned_cols=301 Identities=11% Similarity=0.127 Sum_probs=193.5
Q ss_pred ccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEecccc-CCCCccccccccc
Q 010287 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKSLE 110 (513)
Q Consensus 32 ~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~ 110 (513)
.+|...|+|+.|..++. |.+|..-|.|.+|++++.... ..+. .|.
T Consensus 11 Rp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~-----------------------~~~r~~g~---------- 56 (323)
T KOG0322|consen 11 RPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL-----------------------PLIRLFGR---------- 56 (323)
T ss_pred ccccchheehhhccchh-hhcccccceEEEEEeecCccc-----------------------hhhhhhcc----------
Confidence 37899999999998775 899999999999999876642 2233 223
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
..|+.+.-.| + ..+.+-+.|+.+.+|++..+....+..+......+. ..++.+.++..
T Consensus 57 --~~it~lq~~p--~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFC-------------rfSl~~~~k~~---- 114 (323)
T KOG0322|consen 57 --LFITNLQSIP--N-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFC-------------RFSLVKKPKNS---- 114 (323)
T ss_pred --ceeeceeecC--C-cchhhcCCCceEEEEEccCcceEEEeeeeccccccc-------------cceeccCCCcc----
Confidence 5677777755 2 578899999999999999876555444322211000 11122222211
Q ss_pred CCCCCCCCcCCCCCC-ceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCE--EEEE-cCCeEEEEEcCCCcc
Q 010287 191 GCASNDSSFPPGGVS-SLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGET--FISA-DDLRINLWNLEISNQ 265 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~--l~s~-~d~~i~vwd~~~~~~ 265 (513)
..+.+.++... .+++-|............ ...+..+.+.|..+.. ++.+ +++| .+|.+.+||+.++..
T Consensus 115 ----eqll~yp~rgsde~h~~D~g~~tqv~i~dd---~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~ 187 (323)
T KOG0322|consen 115 ----EQLLEYPSRGSDETHKQDGGDTTQVQIADD---SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDK 187 (323)
T ss_pred ----hhheecCCcccchhhhhccCccceeEccCc---hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCce
Confidence 00001111100 011111111000000000 0123446677777543 3333 3346 699999999998755
Q ss_pred eeeecccCc--cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCc--ccccccceeeccccCCCCccccccccc
Q 010287 266 SFNIVDVKP--ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS--ALCDTHSKLFEEQEAPGTRSFFTEIIA 341 (513)
Q Consensus 266 ~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (513)
.+.+....+ .....|..+|.++.+.+.- ..=++++.+..+..|.+... .+.......++. .
T Consensus 188 ~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn--------------p 252 (323)
T KOG0322|consen 188 IIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN--------------P 252 (323)
T ss_pred eeccccccccccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccccceEEecC--------------C
Confidence 544322211 2346789999999998765 55577888888889987643 221111111111 3
Q ss_pred cEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCc
Q 010287 342 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 420 (513)
Q Consensus 342 ~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 420 (513)
.|..+.+-||++.+++++ |+.|+||..++ ..++..++.|... |.+++|+|+.+.+|+++.|++
T Consensus 253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLkyHsag---------------vn~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKYHSAG---------------VNAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred CccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhhhhcc---------------eeEEEeCCCCchhhhccCCce
Confidence 588899999999999976 59999999997 9999999999876 459999999999999999999
Q ss_pred EEEEec
Q 010287 421 FRVFGC 426 (513)
Q Consensus 421 i~vwd~ 426 (513)
|.+|++
T Consensus 317 ISLWkL 322 (323)
T KOG0322|consen 317 ISLWKL 322 (323)
T ss_pred EEeeec
Confidence 999986
No 176
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=2.4e-19 Score=157.56 Aligned_cols=220 Identities=14% Similarity=0.230 Sum_probs=170.8
Q ss_pred EEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeE
Q 010287 39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (513)
Q Consensus 39 ~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i 118 (513)
.|++......|+++|+..+.|+|||+.... +.+.+.+|. +.|+++
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl-----------------------~hr~lkdh~------------stvt~v 127 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKL-----------------------IHRFLKDHQ------------STVTYV 127 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHH-----------------------HhhhccCCc------------ceeEEE
Confidence 344443444899999999999999987332 335678888 899999
Q ss_pred EEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCC
Q 010287 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (513)
Q Consensus 119 ~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 198 (513)
.| +..+.+|++++..|.|.|..+.++.....+..
T Consensus 128 ~Y--N~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~-------------------------------------------- 161 (673)
T KOG4378|consen 128 DY--NNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI-------------------------------------------- 161 (673)
T ss_pred Ee--cCCcceeEEeccCCcEEEEecccCccccceec--------------------------------------------
Confidence 99 45678999999999999999988753322111
Q ss_pred cCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccc
Q 010287 199 FPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPAN 276 (513)
Q Consensus 199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~ 276 (513)
+....|+-+.|++..+.+++. ++|.|.+||.......+. .
T Consensus 162 -------------------------------~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~-------~ 203 (673)
T KOG4378|consen 162 -------------------------------DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH-------A 203 (673)
T ss_pred -------------------------------CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc-------h
Confidence 112336678899988777764 799999999985554433 4
Q ss_pred cccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEE
Q 010287 277 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 356 (513)
Q Consensus 277 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~ 356 (513)
...|..+...++|+|..+.+|++.+.|..|.+||.+......... + ..+...++|+++|.+|+
T Consensus 204 ~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~--y---------------~~Plstvaf~~~G~~L~ 266 (673)
T KOG4378|consen 204 SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT--Y---------------SHPLSTVAFSECGTYLC 266 (673)
T ss_pred hhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee--e---------------cCCcceeeecCCceEEE
Confidence 567999999999999988999999999999999998765433211 1 14689999999999999
Q ss_pred EEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC
Q 010287 357 SRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 409 (513)
Q Consensus 357 ~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 409 (513)
+|+. |.|..||++....++..+..|... |++++|-|..
T Consensus 267 aG~s~G~~i~YD~R~~k~Pv~v~sah~~s---------------Vt~vafq~s~ 305 (673)
T KOG4378|consen 267 AGNSKGELIAYDMRSTKAPVAVRSAHDAS---------------VTRVAFQPSP 305 (673)
T ss_pred eecCCceEEEEecccCCCCceEeeecccc---------------eeEEEeeecc
Confidence 9987 999999999878889999888876 4578887654
No 177
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=8.3e-19 Score=149.78 Aligned_cols=305 Identities=14% Similarity=0.119 Sum_probs=205.5
Q ss_pred EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (513)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (513)
+.+.+.+|. +.|++|.| +.++..|++|+.|..+++|+++..-...+
T Consensus 48 ~qKD~~~H~------------GCiNAlqF--S~N~~~L~SGGDD~~~~~W~~de~~~~k~-------------------- 93 (609)
T KOG4227|consen 48 CQKDVREHT------------GCINALQF--SHNDRFLASGGDDMHGRVWNVDELMVRKT-------------------- 93 (609)
T ss_pred hhhhhhhhc------------cccceeee--ccCCeEEeecCCcceeeeechHHHHhhcC--------------------
Confidence 345566777 99999999 56789999999999999999976421111
Q ss_pred ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-
Q 010287 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 250 (513)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~- 250 (513)
.+++...-..|...|.|++|....+.+++|
T Consensus 94 -------------------------------------------------~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~ 124 (609)
T KOG4227|consen 94 -------------------------------------------------PKPIGVMEHPHRSNIFSLEFDLENRFLYSGE 124 (609)
T ss_pred -------------------------------------------------CCCceeccCccccceEEEEEccCCeeEecCC
Confidence 001111124566889999999999999999
Q ss_pred cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCC
Q 010287 251 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 330 (513)
Q Consensus 251 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 330 (513)
.+++|.+.|+++.+.+... .-....+.|+.+..+|.. +.|++.+.++.|.+||.+....... .+-..+
T Consensus 125 ~~~~VI~HDiEt~qsi~V~------~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~---~~~~AN-- 192 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVA------NENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPIS---LVLPAN-- 192 (609)
T ss_pred CcceeEeeecccceeeeee------cccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCc---eeeecC--
Confidence 7999999999976654321 112234589999999997 9999999999999999987652211 111111
Q ss_pred CCccccccccccEEEEEEeecC-CEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC
Q 010287 331 GTRSFFTEIIASISDIKFARNG-RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 408 (513)
Q Consensus 331 ~~~~~~~~~~~~v~~i~~sp~~-~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 408 (513)
.......+-|+|-. .+|++.+. +.+.+||++.+..++....+....... +.. -+.+.|+|.
T Consensus 193 --------~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~------~~~---~M~~~~~~~ 255 (609)
T KOG4227|consen 193 --------SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQE------NTE---WMGSLWSPS 255 (609)
T ss_pred --------CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCccc------chh---hhheeeCCC
Confidence 12457888999955 56666666 889999999755555444333222110 000 136889999
Q ss_pred CCEEEEEeCCCcEEEEecCCCCccceeecCC------CCceeEEEEcCCCCceeeecCCCeEEEecCCCCC------ccc
Q 010287 409 GGRVATGSYSNLFRVFGCSEGSAESTTLEAS------KNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNS------ALD 476 (513)
Q Consensus 409 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~------~~~ 476 (513)
|+.+++--....-.+||+-+..+.+...... ...+.+++|..+.. +++|+.+-.|.+ |++. ++.
T Consensus 256 G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~---WklP~~~ds~G~~ 331 (609)
T KOG4227|consen 256 GNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHI---WKLPRANDSYGFT 331 (609)
T ss_pred CCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEE---EecCCCccccCcc
Confidence 9998877766666778887542322222211 12355677766554 899999988887 2111 000
Q ss_pred --------------c---CCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 477 --------------A---NGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 477 --------------~---~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
+ ...+.+|.+.++++.|+|...+|++.+ .+.++||+
T Consensus 332 ~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 332 QIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred ccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 0 112336888999999999999998655 88899986
No 178
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.82 E-value=8.1e-20 Score=170.26 Aligned_cols=277 Identities=15% Similarity=0.210 Sum_probs=207.4
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
...+|..+|.|+.|...|.+|++|+.|..++||..++... .....||.
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~-----------------------lAs~rGhs--------- 232 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC-----------------------LASCRGHS--------- 232 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhh-----------------------hccCCCCc---------
Confidence 4678999999999999999999999999999999877664 36688999
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
+.|+.++. +.++.++++++.|..|++|.+..+..+.+
T Consensus 233 ---~ditdlav--s~~n~~iaaaS~D~vIrvWrl~~~~pvsv-------------------------------------- 269 (1113)
T KOG0644|consen 233 ---GDITDLAV--SSNNTMIAAASNDKVIRVWRLPDGAPVSV-------------------------------------- 269 (1113)
T ss_pred ---cccchhcc--chhhhhhhhcccCceEEEEecCCCchHHH--------------------------------------
Confidence 88999998 45667889999999999999988764332
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNI 269 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~ 269 (513)
+.+|++.|++++|+|-. .++.||++++||.+- ...+
T Consensus 270 --------------------------------------LrghtgavtaiafsP~~---sss~dgt~~~wd~r~---~~~~ 305 (1113)
T KOG0644|consen 270 --------------------------------------LRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARL---EPRI 305 (1113)
T ss_pred --------------------------------------HhccccceeeeccCccc---cCCCCCceEeccccc---cccc
Confidence 47999999999999965 344899999999871 1111
Q ss_pred cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287 270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 349 (513)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 349 (513)
+-.+|..+.+ ...+.++.|-..+ .-+++++.|+.-..|.+...... ...+.-+..+
T Consensus 306 y~prp~~~~~-~~~~~s~~~~~~~-~~f~Tgs~d~ea~n~e~~~l~~~----------------------~~~lif~t~s 361 (1113)
T KOG0644|consen 306 YVPRPLKFTE-KDLVDSILFENNG-DRFLTGSRDGEARNHEFEQLAWR----------------------SNLLIFVTRS 361 (1113)
T ss_pred cCCCCCCccc-ccceeeeeccccc-cccccccCCcccccchhhHhhhh----------------------ccceEEEecc
Confidence 2223333333 3556777787777 78999999999888876432210 0112222222
Q ss_pred ecC-CEEEEE-eCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC-EEEEEeCCCcEEEEec
Q 010287 350 RNG-RHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRVFGC 426 (513)
Q Consensus 350 p~~-~~l~~~-~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~ 426 (513)
.+. .+.+++ .+-.+.+|++.. +...+.+.+|... ++.+.++|-+. ..++++.||...|||+
T Consensus 362 sd~~~~~~~ar~~~~~~vwnl~~-g~l~H~l~ghsd~---------------~yvLd~Hpfn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 362 SDLSSIVVTARNDHRLCVWNLYT-GQLLHNLMGHSDE---------------VYVLDVHPFNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred ccccccceeeeeeeEeeeeeccc-chhhhhhcccccc---------------eeeeeecCCCcHhhhhccCCCceEeeec
Confidence 222 333343 347889999986 8888888888776 34789999655 4558999999999999
Q ss_pred CCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 427 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 427 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
-.+.++.....+|. .+....|+++|..++....-|.+.|
T Consensus 426 ~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~hgql~i 464 (1113)
T KOG0644|consen 426 WEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDHGQLYI 464 (1113)
T ss_pred ccCCcceeeecccc-eeeccccCCCCceEecCCCCCceEE
Confidence 98876665555644 4557899999999999888888888
No 179
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.82 E-value=1.7e-18 Score=153.85 Aligned_cols=205 Identities=17% Similarity=0.246 Sum_probs=160.3
Q ss_pred EEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeec
Q 010287 246 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 325 (513)
Q Consensus 246 ~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 325 (513)
++++++||.+.+.+-. ++ .- ..+..|.+.+.+-.|+|+| .-|+++++||.|++|. ++|-+...
T Consensus 78 ~~i~s~DGkf~il~k~-~r-VE-------~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWS-rsGMLRSt------ 140 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKS-AR-VE-------RSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWS-RSGMLRST------ 140 (737)
T ss_pred EEEEcCCceEEEeccc-ch-hh-------hhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEe-ccchHHHH------
Confidence 3344489998888754 22 21 2567899999999999999 8899999999999998 55543111
Q ss_pred cccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEE
Q 010287 326 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 405 (513)
Q Consensus 326 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (513)
+.....+|.|++|.|+...++-+..+.+.|=.+.. ...+-..+.|.+. |.++.|
T Consensus 141 ----------l~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~-n~k~i~WkAHDGi---------------iL~~~W 194 (737)
T KOG1524|consen 141 ----------VVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAA-NSKIIRWRAHDGL---------------VLSLSW 194 (737)
T ss_pred ----------HhhcCceeEEEEECCCCCceEEecCCeEEEeeccc-ccceeEEeccCcE---------------EEEeec
Confidence 11112579999999999888887778888888886 5566678889887 569999
Q ss_pred eCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCcccccc
Q 010287 406 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFS 485 (513)
Q Consensus 406 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~ 485 (513)
++.++.+++|+.|-..++||.. +..+..-..|..++++++|.|+ +.++.++. .+.|+ ..+. .
T Consensus 195 ~~~s~lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~---~~p~-----------~ 256 (737)
T KOG1524|consen 195 STQSNIIASGGEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF---SSPR-----------V 256 (737)
T ss_pred CccccceeecCCceeEEeeccc--CcccccCChhccceeeeeeccc-cceeeeee-eeeee---cCCC-----------c
Confidence 9999999999999999999977 3555677789999999999999 66677653 34455 2222 6
Q ss_pred CCeeEEEEeCCCCEEEEEcCCcEEEE
Q 010287 486 MKLLHLAWHPSENSIACAASNSLYMY 511 (513)
Q Consensus 486 ~~i~~~~~sp~~~~la~~~~~~~~i~ 511 (513)
+.|..++|||||..+++|+..+..++
T Consensus 257 GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 257 GSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred cceEEEEEcCCCceeeccccCceEEE
Confidence 88999999999999999997776664
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=8.3e-18 Score=161.02 Aligned_cols=311 Identities=14% Similarity=0.230 Sum_probs=203.3
Q ss_pred cEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccce
Q 010287 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (513)
Q Consensus 37 ~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~ 116 (513)
+-..+.|+|-...+++++..-.|+|||.+.++.. ..|..+.+ ....|+
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l-----------------------~~F~n~~~---------~~t~Vs 1113 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL-----------------------NGFDNGAF---------PDTRVS 1113 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCcee-----------------------ccccCCCC---------CCCccc
Confidence 4567889998889999987779999999877642 12222221 116799
Q ss_pred eEEEeecCCCceEEEeecCCeEEEEEccCc---eeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEK---KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (513)
Q Consensus 117 ~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (513)
.+++....|..++++|+.||.||||+--.. +.+.+.....-.+ ........+-.+.|-.....+
T Consensus 1114 ~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~------~~~~~r~~~~v~dWqQ~~G~L------- 1180 (1387)
T KOG1517|consen 1114 DLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSD------QLPGARGTGLVVDWQQQSGHL------- 1180 (1387)
T ss_pred eeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccc------cCccCCCCCeeeehhhhCCeE-------
Confidence 999987777889999999999999974322 1111111110000 000000111122333332322
Q ss_pred CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
+.++.-..|++||......... ...+....|+++.-+. .|+.+++| .||.|++||.+......-+
T Consensus 1181 -----l~tGd~r~IRIWDa~~E~~~~d------iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v-- 1247 (1387)
T KOG1517|consen 1181 -----LVTGDVRSIRIWDAHKEQVVAD------IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV-- 1247 (1387)
T ss_pred -----EecCCeeEEEEEecccceeEee------cccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccc--
Confidence 4555678999999865433211 1123445566665543 47899999 8999999999865542111
Q ss_pred cCccccccccCC--eEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287 272 VKPANMEDLTEV--ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 349 (513)
Q Consensus 272 ~~~~~~~~~~~~--i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 349 (513)
...+.|+.. |..+.+.+.|-..|++|+.||.|++||+|.... .. ......+.. ..+.++++..+
T Consensus 1248 ---~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~-~~~iv~~~~---------yGs~lTal~VH 1313 (1387)
T KOG1517|consen 1248 ---CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ET-FLTIVAHWE---------YGSALTALTVH 1313 (1387)
T ss_pred ---eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cc-cceeeeccc---------cCccceeeeec
Confidence 134567766 999999998755699999999999999998522 11 111111110 11358999999
Q ss_pred ecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 350 RNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 350 p~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
++...+++|+.+.|+||++. ++.+..++.+.... ...+-.+.+++|+|..-.+++|+.|..|.||.....
T Consensus 1314 ~hapiiAsGs~q~ikIy~~~--G~~l~~~k~n~~F~--------~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1314 EHAPIIASGSAQLIKIYSLS--GEQLNIIKYNPGFM--------GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cCCCeeeecCcceEEEEecC--hhhhcccccCcccc--------cCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 99999999988999999997 66666665443321 133334569999999999999999999999987744
No 181
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=2.9e-17 Score=154.51 Aligned_cols=288 Identities=15% Similarity=0.180 Sum_probs=184.9
Q ss_pred ccccccccceeccccccccccccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcce
Q 010287 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (513)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (513)
....|++... ..+..-..-...|+|++|+|. ..+||.|.++|+|.+||+..+... +...
T Consensus 223 ~~~vW~~~~p---~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~-----------------~~s~ 282 (555)
T KOG1587|consen 223 VLLVWSLKNP---NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT-----------------PPSG 282 (555)
T ss_pred eEEEEecCCC---CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC-----------------CCcc
Confidence 5667877653 112122233689999999996 778999999999999998766542 0111
Q ss_pred EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeee-eccccCCCcccCCCCcccC
Q 010287 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV-FDWNVHPEKAAGNGPIFGS 170 (513)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 170 (513)
.......|. .+++.+.|..+..+.-|++++.||.|..|+++.-..... .......
T Consensus 283 ls~~~~sh~------------~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~------------ 338 (555)
T KOG1587|consen 283 LSALEVSHS------------EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK------------ 338 (555)
T ss_pred cccccccCC------------cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccc------------
Confidence 122234555 899999998766656799999999999997765332110 0000000
Q ss_pred cccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEEEE
Q 010287 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFIS 249 (513)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s 249 (513)
+ ... -......+++++|.+ +...|+.
T Consensus 339 -------------------------------------~--------------~~~--~~~~~~~~t~~~F~~~~p~~FiV 365 (555)
T KOG1587|consen 339 -------------------------------------H--------------KGQ--QSSKAVGATSLKFEPTDPNHFIV 365 (555)
T ss_pred -------------------------------------c--------------ccc--ccccccceeeEeeccCCCceEEE
Confidence 0 000 001123478899987 4556777
Q ss_pred E-cCCeEEEEEcCCCcceeeecccCc-cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287 250 A-DDLRINLWNLEISNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 327 (513)
Q Consensus 250 ~-~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 327 (513)
| ++|.|..-+........... .++ .....|.++|+++.++|-+...|++++ |.++++|...... .++..+
T Consensus 366 GTe~G~v~~~~r~g~~~~~~~~-~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~---~Pl~~~--- 437 (555)
T KOG1587|consen 366 GTEEGKVYKGCRKGYTPAPEVS-YKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA---SPLLSL--- 437 (555)
T ss_pred EcCCcEEEEEeccCCccccccc-ccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCC---Ccchhh---
Confidence 7 89988874443222222100 111 245678899999999999966677666 9999999865211 112222
Q ss_pred cCCCCccccccccccEEEEEEeecCC-EEEEEeC-CeEEEEEccCC-CCCeeeeecccccccccccccccCCccceeeEE
Q 010287 328 EAPGTRSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 404 (513)
Q Consensus 328 ~~~~~~~~~~~~~~~v~~i~~sp~~~-~l~~~~~-~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (513)
..+...+++++|||-.. .+++++. |.+.+||+... ..++.+....... .+.+.
T Consensus 438 ---------~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~---------------l~~~~ 493 (555)
T KOG1587|consen 438 ---------DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPA---------------LTRVR 493 (555)
T ss_pred ---------hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccc---------------cceee
Confidence 22335699999999654 5555664 99999999742 2334433333221 23788
Q ss_pred EeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 405 LSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 405 ~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
|+++|+.|++|...|.+++|++...
T Consensus 494 ~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 494 WSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred cCCCCcEEEEecCCCcEEEEEcCch
Confidence 9999999999999999999999643
No 182
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.2e-18 Score=155.79 Aligned_cols=273 Identities=15% Similarity=0.173 Sum_probs=186.9
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
....|.+.|++++|+|....|++++.||.|.+|+++..... ..-..+...+|.+|.
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s---------------~~~~~epi~tfraH~--------- 344 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS---------------AEKDVEPILTFRAHE--------- 344 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc---------------cccceeeeEEEeccc---------
Confidence 45578999999999999999999999999999998432210 011344556788999
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
++|.|++. ..++..+++|+.||+|+.|++.... -. +..+
T Consensus 345 ---gPVl~v~v--~~n~~~~ysgg~Dg~I~~w~~p~n~-dp-------------------------------~ds~---- 383 (577)
T KOG0642|consen 345 ---GPVLCVVV--PSNGEHCYSGGIDGTIRCWNLPPNQ-DP-------------------------------DDSY---- 383 (577)
T ss_pred ---CceEEEEe--cCCceEEEeeccCceeeeeccCCCC-Cc-------------------------------cccc----
Confidence 99999999 4588899999999999999886321 00 0000
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~ 268 (513)
| .......+.||.+.|+.+++++....|+++ .||++++|+......+
T Consensus 384 ---------------------d---------p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~-- 431 (577)
T KOG0642|consen 384 ---------------------D---------PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPC-- 431 (577)
T ss_pred ---------------------C---------cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCcc--
Confidence 0 000111257999999999999998889998 7999999998754431
Q ss_pred ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 348 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 348 (513)
++ ..........++.+-...+...++...-+.-.++++..... +..++....+.+. -...+..+.+
T Consensus 432 ~f-----~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~----~~~~~s~~~~~~~-----~~~~in~vVs 497 (577)
T KOG0642|consen 432 TF-----GEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD----LLIFESSASPGPR-----RYPQINKVVS 497 (577)
T ss_pred cc-----CCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh----eeeccccCCCccc-----ccCccceEEe
Confidence 11 11111233455555444322233222233333333333222 3334332222111 1135777888
Q ss_pred eecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287 349 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 427 (513)
Q Consensus 349 sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 427 (513)
+|.+.+.+++.+ +.|+++|..+ ++++.....|... ++++++.|+|.+|++++.|+.+++|.+.
T Consensus 498 ~~~~~~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~s---------------vtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 498 HPTADITFTAHEDRSIRFFDNKT-GKILHSMVAHKDS---------------VTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred cCCCCeeEecccCCceecccccc-cccchheeeccce---------------ecceeecCCCceEEeecCCceeehhhcc
Confidence 998888888775 9999999997 8999888888765 4599999999999999999999999987
Q ss_pred CC
Q 010287 428 EG 429 (513)
Q Consensus 428 ~~ 429 (513)
..
T Consensus 562 ~k 563 (577)
T KOG0642|consen 562 VK 563 (577)
T ss_pred ch
Confidence 54
No 183
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=7.2e-17 Score=151.88 Aligned_cols=260 Identities=13% Similarity=0.172 Sum_probs=178.8
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
..|.+++|+|... .+++.|+.+|.|.+||++.+.......+
T Consensus 243 s~v~~~~f~p~~p-~ll~gG~y~GqV~lWD~~~~~~~~~s~l-------------------------------------- 283 (555)
T KOG1587|consen 243 SEVTCLKFCPFDP-NLLAGGCYNGQVVLWDLRKGSDTPPSGL-------------------------------------- 283 (555)
T ss_pred CceeEEEeccCCc-ceEEeeccCceEEEEEccCCCCCCCccc--------------------------------------
Confidence 7799999998543 5888899999999999988753211000
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC--CEEEEE-cCCeEEEEEcCCCcceeee
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQSFNI 269 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~-~d~~i~vwd~~~~~~~~~~ 269 (513)
......|..++..+.|..+. .-|+++ .||.|..|+++.-......
T Consensus 284 --------------------------------s~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~ 331 (555)
T KOG1587|consen 284 --------------------------------SALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEG 331 (555)
T ss_pred --------------------------------ccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhh
Confidence 00135788889999997643 337776 7999999988744332222
Q ss_pred cccCccc----cccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287 270 VDVKPAN----MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 345 (513)
Q Consensus 270 ~~~~~~~----~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 345 (513)
....+.. -......+++++|.+..++.|+.|+++|.|..-+........ ...++++ ..+..|.++|++
T Consensus 332 ~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~--~~~~~~~------~~~~~h~g~v~~ 403 (555)
T KOG1587|consen 332 LLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP--EVSYKGH------STFITHIGPVYA 403 (555)
T ss_pred cccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc--ccccccc------ccccccCcceEe
Confidence 1111100 012235689999999998999999999999874422222111 1222222 124667899999
Q ss_pred EEEeecCC-EEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC-EEEEEeCCCcEEE
Q 010287 346 IKFARNGR-HILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRV 423 (513)
Q Consensus 346 i~~sp~~~-~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~v 423 (513)
+.++|=+. .+.++.|.+++||.......++..+..+... +++++|||-.. .++++..||.|.+
T Consensus 404 v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~---------------v~~vaWSptrpavF~~~d~~G~l~i 468 (555)
T KOG1587|consen 404 VSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDY---------------VTDVAWSPTRPAVFATVDGDGNLDI 468 (555)
T ss_pred eecCCCccceeeeeccceeEeccccCCCCcchhhhhccce---------------eeeeEEcCcCceEEEEEcCCCceeh
Confidence 99999654 4445668999999987335666555544443 56999999775 5667788999999
Q ss_pred EecCCCCccc-eeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 424 FGCSEGSAES-TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 424 wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
||+....... .+.+........+.+++.|+.|+.|...|.+.+
T Consensus 469 WDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~ 512 (555)
T KOG1587|consen 469 WDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHI 512 (555)
T ss_pred hhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEE
Confidence 9997653332 444444566677888999999999999999988
No 184
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.78 E-value=3.1e-15 Score=144.74 Aligned_cols=328 Identities=22% Similarity=0.363 Sum_probs=218.9
Q ss_pred cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
...|...|.++.|.+.+..++.++.|+.+.+|+...... ....+.++..
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~~~~~~--------- 109 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK----------------------LIKSLEGLHD--------- 109 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce----------------------eEEEEeccCC---------
Confidence 457899999999999999999999999999999765541 1122333220
Q ss_pred ccccceeEEEeecCCCc-eEEEeec-CCeEEEEEccC-ceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287 111 IEEKINKIRWCQSANSA-LYLLSTN-DKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~-~l~s~s~-d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 187 (513)
..+..+.+. ..++. .++..+. |+.+++|+... .....
T Consensus 110 --~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~------------------------------------- 149 (466)
T COG2319 110 --SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIR------------------------------------- 149 (466)
T ss_pred --CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEE-------------------------------------
Confidence 246666664 44555 4444444 99999999987 22111
Q ss_pred cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-c-CCeEEEEEcCCCcc
Q 010287 188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQ 265 (513)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~-d~~i~vwd~~~~~~ 265 (513)
....|...|.+++|+|+++.++++ . ++.+++|+......
T Consensus 150 ---------------------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (466)
T COG2319 150 ---------------------------------------TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP 190 (466)
T ss_pred ---------------------------------------EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce
Confidence 135777889999999999988887 4 99999999986333
Q ss_pred eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287 266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 345 (513)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 345 (513)
.. .+.+|...+.+++|+|++...+++++.|+.|++||...+..... .+ .+|.... .
T Consensus 191 ~~--------~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~---~~------------~~~~~~~-~ 246 (466)
T COG2319 191 LS--------TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS---TL------------SGHSDSV-V 246 (466)
T ss_pred EE--------eeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee---ec------------CCCCcce-e
Confidence 32 34568999999999999832566669999999998875443210 22 2333443 2
Q ss_pred EEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEE
Q 010287 346 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 424 (513)
Q Consensus 346 i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 424 (513)
..|+|++.++++++. +.+++|++......+..+..|... +..+.|+|++..+++++.|+.+.+|
T Consensus 247 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~~~~~~d~~~~~~ 311 (466)
T COG2319 247 SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS---------------VLSVAFSPDGKLLASGSSDGTVRLW 311 (466)
T ss_pred EeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCcc---------------EEEEEECCCCCEEEEeeCCCcEEEE
Confidence 389999988877664 999999998633323333333222 4478999999998889888999999
Q ss_pred ecCCCCccceee-cCCCCceeEEEEcCCCCceeee-cCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEE
Q 010287 425 GCSEGSAESTTL-EASKNPMRRQVQTPSRPSRPLG-SLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIAC 502 (513)
Q Consensus 425 d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~ 502 (513)
+..+........ ..|...+..+.+.+++..++.+ ..|+.+.+ +...... ..........+..+.+++ ...+..
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~ 386 (466)
T COG2319 312 DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL---WDLRTGK-PLKTLEGHSNVLSVSFSP-DGRVVS 386 (466)
T ss_pred EcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEe---eecCCCc-eeEEecCCceEEEEEECC-CCCEEE
Confidence 888763332222 3677778888884332455555 67777776 2222111 111111122288999999 533333
Q ss_pred --EcCCcEEEEe
Q 010287 503 --AASNSLYMYY 512 (513)
Q Consensus 503 --~~~~~~~i~~ 512 (513)
..+..+.+|.
T Consensus 387 ~~~~~~~~~~~~ 398 (466)
T COG2319 387 SGSTDGTVRLWD 398 (466)
T ss_pred EecCCCceEEEe
Confidence 3466777774
No 185
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.78 E-value=2.5e-17 Score=150.23 Aligned_cols=268 Identities=12% Similarity=0.168 Sum_probs=192.0
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
..|+.++|-| ||..|+.+..+ .+.+||...|...+.
T Consensus 13 hci~d~afkP--DGsqL~lAAg~-rlliyD~ndG~llqt----------------------------------------- 48 (1081)
T KOG1538|consen 13 HCINDIAFKP--DGTQLILAAGS-RLLVYDTSDGTLLQP----------------------------------------- 48 (1081)
T ss_pred cchheeEECC--CCceEEEecCC-EEEEEeCCCcccccc-----------------------------------------
Confidence 3599999955 88888887655 488999988864432
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
+++|.+.|.|++|+.||+.|++| .|..|.+|...-.+.+ +
T Consensus 49 -----------------------------------LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-k--- 89 (1081)
T KOG1538|consen 49 -----------------------------------LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-K--- 89 (1081)
T ss_pred -----------------------------------cccccceEEEEEEccCCceeccCCCceeEEEeccccccee-e---
Confidence 57999999999999999999999 7999999987643322 1
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 351 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 351 (513)
..|.+.|.|+.|+|-. ..+++++.. ..-+|......... ......+.+++|..|
T Consensus 90 ------YSH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~V~K------------------~kss~R~~~CsWtnD 143 (1081)
T KOG1538|consen 90 ------YSHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKSVSK------------------HKSSSRIICCSWTND 143 (1081)
T ss_pred ------eccCCeeeEeecCchH-HHhhhcchh-hccccChhhhhHHh------------------hhhheeEEEeeecCC
Confidence 4589999999999987 788887653 45677765433211 111256889999999
Q ss_pred CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC-----CEEEEEeCCCcEEEEe
Q 010287 352 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-----GRVATGSYSNLFRVFG 425 (513)
Q Consensus 352 ~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-----~~l~~~~~dg~i~vwd 425 (513)
|++++.|-. |+|.+-+-. +++.-.+..+.+.. .+|++++|+|.. ..+++.....++.+|.
T Consensus 144 GqylalG~~nGTIsiRNk~--gEek~~I~Rpgg~N------------spiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~ 209 (1081)
T KOG1538|consen 144 GQYLALGMFNGTISIRNKN--GEEKVKIERPGGSN------------SPIWSICWNPSSGEGRNDILAVADWGQTLSFYQ 209 (1081)
T ss_pred CcEEEEeccCceEEeecCC--CCcceEEeCCCCCC------------CCceEEEecCCCCCCccceEEEEeccceeEEEE
Confidence 999999975 999988654 44433333322211 136799999964 4778888888999998
Q ss_pred cCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE--ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEE
Q 010287 426 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 503 (513)
Q Consensus 426 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~ 503 (513)
+... .+ ..-+.-.-...++.+-++|.+++.|+.|+.+.+ ++|-.+ +..-++...|..++.+|+++.++.|
T Consensus 210 LsG~-~I-gk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrL------GTvg~~D~WIWtV~~~PNsQ~v~~G 281 (1081)
T KOG1538|consen 210 LSGK-QI-GKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRL------GTVGEQDSWIWTVQAKPNSQYVVVG 281 (1081)
T ss_pred ecce-ee-cccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEE------eeccccceeEEEEEEccCCceEEEE
Confidence 8732 22 111122223347888999999999999999999 222211 2222356789999999999999988
Q ss_pred c-CCcEEEE
Q 010287 504 A-SNSLYMY 511 (513)
Q Consensus 504 ~-~~~~~i~ 511 (513)
. ++++-.|
T Consensus 282 CqDGTiACy 290 (1081)
T KOG1538|consen 282 CQDGTIACY 290 (1081)
T ss_pred EccCeeehh
Confidence 8 5555444
No 186
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=5.1e-18 Score=151.86 Aligned_cols=258 Identities=18% Similarity=0.186 Sum_probs=175.8
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
+.|.+++|.|+.. .|++++.|++|++|+++... ....
T Consensus 295 d~ir~l~~~~sep--~lit~sed~~lk~WnLqk~~--~s~~--------------------------------------- 331 (577)
T KOG0642|consen 295 DCIRALAFHPSEP--VLITASEDGTLKLWNLQKAK--KSAE--------------------------------------- 331 (577)
T ss_pred hhhhhhhcCCCCC--eEEEeccccchhhhhhcccC--Cccc---------------------------------------
Confidence 8899999987554 89999999999999994311 0000
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
.. ..+..+ +.+|.++|.|+++.++++.+++| -||+|+.|++-...-.....+
T Consensus 332 -----------~~---------------~epi~t-fraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~d 384 (577)
T KOG0642|consen 332 -----------KD---------------VEPILT-FRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYD 384 (577)
T ss_pred -----------cc---------------eeeeEE-EecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccC
Confidence 00 011112 47999999999999999999999 699999997653222221111
Q ss_pred cC--ccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287 272 VK--PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 349 (513)
Q Consensus 272 ~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 349 (513)
+. ...+.+|.+.+..+++++.. ..|++++.||++++|+...... .+|..+... +.-.++.+-
T Consensus 385 p~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-----~~f~~~~e~----------g~Plsvd~~ 448 (577)
T KOG0642|consen 385 PSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-----CTFGEPKEH----------GYPLSVDRT 448 (577)
T ss_pred cchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCc-----cccCCcccc----------CCcceEeec
Confidence 11 13578999999999999987 8899999999999999765543 223332221 234455554
Q ss_pred ecCCEEEEEe--CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287 350 RNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 427 (513)
Q Consensus 350 p~~~~l~~~~--~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 427 (513)
.....+..++ -+.-.++++.. ...+..+...... .... ...+..+.++|.+.+.+++..|+.|+++|..
T Consensus 449 ss~~a~~~~s~~~~~~~~~~~ev-~s~~~~~~s~~~~--~~~~------~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 449 SSRPAHSLASFRFGYTSIDDMEV-VSDLLIFESSASP--GPRR------YPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred cchhHhhhhhcccccccchhhhh-hhheeeccccCCC--cccc------cCccceEEecCCCCeeEecccCCceeccccc
Confidence 3221222222 13333444443 2222222211111 0100 0113378899999999999999999999999
Q ss_pred CCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
++ .++.....|...+.++++.|+|.+|++++.|+.+++
T Consensus 520 ~~-~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l 557 (577)
T KOG0642|consen 520 TG-KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRL 557 (577)
T ss_pred cc-ccchheeeccceecceeecCCCceEEeecCCceeeh
Confidence 88 566888899999999999999999999999999999
No 187
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=149.03 Aligned_cols=242 Identities=19% Similarity=0.271 Sum_probs=159.6
Q ss_pred cccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287 29 GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (513)
Q Consensus 29 ~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (513)
.+..+|++.|+|++|+.+|.+||+|+.|-++.|||....+. +...-.||.
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl----------------------lhsI~TgHt-------- 93 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL----------------------LHSISTGHT-------- 93 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcce----------------------eeeeecccc--------
Confidence 36779999999999999999999999999999999654332 223346888
Q ss_pred ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (513)
Q Consensus 109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 188 (513)
..|.++.|.|..++.++++|+.|..|+++|+...+....-.
T Consensus 94 ----aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~----------------------------------- 134 (758)
T KOG1310|consen 94 ----ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDH----------------------------------- 134 (758)
T ss_pred ----cceeEEeeeccCCCeEEEeccCcceEEEEeccccccccccc-----------------------------------
Confidence 88999999998888999999999999999998643111000
Q ss_pred ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC-CEEEEE-cCCeEEEEEcCCCcce
Q 010287 189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQS 266 (513)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~vwd~~~~~~~ 266 (513)
+....++. ...|...|..++..|++ ..|.++ .||+|+.+|++....+
T Consensus 135 -------------~~~~~~~~------------------~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c 183 (758)
T KOG1310|consen 135 -------------GMEETTRC------------------WSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC 183 (758)
T ss_pred -------------Cccchhhh------------------hhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC
Confidence 00000111 25677888999999987 677777 7999999999864332
Q ss_pred eeeccc--CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccc--------------cceeeccccCC
Q 010287 267 FNIVDV--KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT--------------HSKLFEEQEAP 330 (513)
Q Consensus 267 ~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--------------~~~~~~~~~~~ 330 (513)
..-.+. ....+...--...|+..+|..+.+|+.|+.|-..++||.|....... .+..|......
T Consensus 184 ~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlk 263 (758)
T KOG1310|consen 184 NPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLK 263 (758)
T ss_pred CccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcccc
Confidence 111000 00011122245679999999999999999999999999543211100 01111110000
Q ss_pred CCccccccccccEEEEEEeecCCEEEEE-eCCeEEEEEccC
Q 010287 331 GTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINM 370 (513)
Q Consensus 331 ~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~~~~v~iwd~~~ 370 (513)
...........-++-+.|+|+|..|+.. +...|+++|+..
T Consensus 264 n~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 264 NSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred CcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 0000001111125677899999766664 336899999875
No 188
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1e-17 Score=147.18 Aligned_cols=303 Identities=15% Similarity=0.191 Sum_probs=216.7
Q ss_pred cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
.-.|.+.|..|.|+..|..|++|+.|..|.+||+...... ..-..||.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~----------------------l~f~SGH~---------- 185 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK----------------------LSFESGHC---------- 185 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcc----------------------cccccccc----------
Confidence 4479999999999999999999999999999999876641 12235777
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCce-eeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
..|..-.|.|..+..-+++++.||.+++=.+.... +...
T Consensus 186 --~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t-------------------------------------- 225 (559)
T KOG1334|consen 186 --NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENT-------------------------------------- 225 (559)
T ss_pred --cchhhhhccCCCCCcCceeccccCceeeeeeccccceecc--------------------------------------
Confidence 77888889998888889999999999876654322 1111
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC-CEEEEE-cCCeEEEEEcCCCccee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSF 267 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~vwd~~~~~~~~ 267 (513)
..+..|.++|.-++.-|+. ..|.++ .|+.+.-+|+++.....
T Consensus 226 ------------------------------------~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~ 269 (559)
T KOG1334|consen 226 ------------------------------------KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE 269 (559)
T ss_pred ------------------------------------eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc
Confidence 1135788889999998864 445565 79999999998765433
Q ss_pred eecccCccccccccC---CeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccc--cccceeeccccCCCCcccccccccc
Q 010287 268 NIVDVKPANMEDLTE---VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC--DTHSKLFEEQEAPGTRSFFTEIIAS 342 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (513)
.+. .-..+.. ....++.+|...+.+++++.|-.+++||.+.-... ...+..+..+.. .....-.
T Consensus 270 ~~~-----cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl------~~d~~v~ 338 (559)
T KOG1334|consen 270 KFV-----CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL------VEDDPVN 338 (559)
T ss_pred eee-----eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccc------cccCccc
Confidence 222 1111222 46789999988789999999999999998764321 000111211110 1122246
Q ss_pred EEEEEEeec-CCEEEEEeCCeEEEEEccCC-C----------CCee-eeecccccccccccccccCCccceeeE-EEeCC
Q 010287 343 ISDIKFARN-GRHILSRDYMTLKLWDINMD-S----------GPVA-TFQVHEHLRPKLCDLYENDSIFDKFEC-CLSGD 408 (513)
Q Consensus 343 v~~i~~sp~-~~~l~~~~~~~v~iwd~~~~-~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~ 408 (513)
|++++|+.+ +.+|++-.|-.|+++.-... + ..+. .+++|..... |-.+ -|-|.
T Consensus 339 ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T-------------VKgVNFfGPr 405 (559)
T KOG1334|consen 339 ITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT-------------VKGVNFFGPR 405 (559)
T ss_pred ceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccc-------------cceeeeccCc
Confidence 999999965 45666667778888854321 1 1112 2555554321 1133 36789
Q ss_pred CCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 409 GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 409 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.+|+++|++-|.|.||+-.++ +++..+++...-|+++.-+|--..||+.+-|..|+|
T Consensus 406 sEyVvSGSDCGhIFiW~K~t~-eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKI 462 (559)
T KOG1334|consen 406 SEYVVSGSDCGHIFIWDKKTG-EIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKI 462 (559)
T ss_pred cceEEecCccceEEEEecchh-HHHHHhhcccceEeccCCCCCCchhhccCCccceee
Confidence 999999999999999998877 666888888889999999999999999999999999
No 189
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=3.2e-15 Score=137.99 Aligned_cols=206 Identities=16% Similarity=0.128 Sum_probs=128.2
Q ss_pred eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287 235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 312 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 312 (513)
...++++|++++++++ .++.|.+|++++........ ..+. +......++++|++..++++...++.|.+||+.
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~----~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~ 156 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPI----QIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS 156 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCce----eecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence 5679999999999887 48999999997433222111 0111 223467888999994444566667999999997
Q ss_pred Cccccccc-ceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCC-CC--Ceeeeeccccccc
Q 010287 313 QSALCDTH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMD-SG--PVATFQVHEHLRP 386 (513)
Q Consensus 313 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~-~~--~~~~~~~~~~~~~ 386 (513)
+....... ........ ......+.|+|+++++++++. +.|.+|+++.. ++ .+..+........
T Consensus 157 ~~g~l~~~~~~~~~~~~-----------g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~ 225 (330)
T PRK11028 157 DDGHLVAQEPAEVTTVE-----------GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFS 225 (330)
T ss_pred CCCcccccCCCceecCC-----------CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence 63321100 00011000 123567999999999988763 99999999742 22 1222221110000
Q ss_pred ccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCCCccceeecCC---CCceeEEEEcCCCCceeeecC-C
Q 010287 387 KLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEAS---KNPMRRQVQTPSRPSRPLGSL-S 461 (513)
Q Consensus 387 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~-d 461 (513)
.. .....+.++|++++|+++. .++.|.+|++....... ++..+ ....+.+.++|++++|++++. +
T Consensus 226 -------~~--~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~-~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~ 295 (330)
T PRK11028 226 -------DT--RWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL-SFEGHQPTETQPRGFNIDHSGKYLIAAGQKS 295 (330)
T ss_pred -------CC--ccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE-EEeEEEeccccCCceEECCCCCEEEEEEccC
Confidence 00 0012588999999999885 47899999986543221 11111 124457899999999987764 7
Q ss_pred CeEEE
Q 010287 462 GVVRR 466 (513)
Q Consensus 462 ~~i~~ 466 (513)
+.|.+
T Consensus 296 ~~v~v 300 (330)
T PRK11028 296 HHISV 300 (330)
T ss_pred CcEEE
Confidence 88888
No 190
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=1.2e-17 Score=135.32 Aligned_cols=289 Identities=11% Similarity=0.090 Sum_probs=176.3
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
+.|+++.| ..+ .+|+++..-|.|++|++++..-....+..... ..+.+...|++.
T Consensus 15 ~~v~s~~f--qa~-~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~--------------~it~lq~~p~d~-------- 69 (323)
T KOG0322|consen 15 SSVTSVLF--QAN-ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRL--------------FITNLQSIPNDS-------- 69 (323)
T ss_pred chheehhh--ccc-hhhhcccccceEEEEEeecCccchhhhhhccc--------------eeeceeecCCcc--------
Confidence 88999999 555 46999999999999999987655444322110 001122223222
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCC--eEEEEEcCCCcceeeec
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDL--RINLWNLEISNQSFNIV 270 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~--~i~vwd~~~~~~~~~~~ 270 (513)
..+-+.+..+.+|++.... +...|.-.++++.|.+-. +...... .+-.++-+.... ..+.
T Consensus 70 -----l~tqgRd~~L~lw~ia~s~----------~i~i~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~ 131 (323)
T KOG0322|consen 70 -----LDTQGRDPLLILWTIAYSA----------FISIHSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQ 131 (323)
T ss_pred -----hhhcCCCceEEEEEccCcc----------eEEEeeeeccccccccce--eccCCCcchhheecCCcccch-hhhh
Confidence 2556778888888875422 234444444555554421 2222111 222333221111 0000
Q ss_pred c--------cCccccccccCCeEEEEEeCC-CC-eEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccccccc
Q 010287 271 D--------VKPANMEDLTEVITSAEFHPT-HC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 340 (513)
Q Consensus 271 ~--------~~~~~~~~~~~~i~~~~~~~~-~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (513)
+ +.+..-....+.+.|..+.-+ +. -++++|.++|.+.+||+.++.........++. ..-...|.
T Consensus 132 D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv------~~~~ash~ 205 (323)
T KOG0322|consen 132 DGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKV------ESPNASHK 205 (323)
T ss_pred ccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccccc------ccchhhcc
Confidence 0 111112233566777775432 21 35677888999999999987432211111111 11246688
Q ss_pred ccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCee---eeecccccccccccccccCCccceeeEEEeCCCCEEEEEe
Q 010287 341 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVA---TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 416 (513)
Q Consensus 341 ~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 416 (513)
++|.++.+.+.-..=++|+ +..+..|.+......++ ........ +..+.+-||++.+||++
T Consensus 206 qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpG---------------v~gvrIRpD~KIlATAG 270 (323)
T KOG0322|consen 206 QPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPG---------------VSGVRIRPDGKILATAG 270 (323)
T ss_pred CcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCC---------------ccceEEccCCcEEeecc
Confidence 9999999987433333433 46788888864211111 11111111 23788999999999999
Q ss_pred CCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 417 YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 417 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.|+.||||+.++. ..+..++.|...|++++|+|+...+|.++.|+.|.+
T Consensus 271 WD~RiRVyswrtl-~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISL 319 (323)
T KOG0322|consen 271 WDHRIRVYSWRTL-NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISL 319 (323)
T ss_pred cCCcEEEEEeccC-CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEe
Confidence 9999999999988 556899999999999999999999999999999998
No 191
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=4.5e-17 Score=139.44 Aligned_cols=212 Identities=13% Similarity=0.155 Sum_probs=157.4
Q ss_pred ccccccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287 30 EEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (513)
...+|+.+|..++|+|- ...||+||.|.+|.||++....... +.......|.||.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~----------------~ltepvv~L~gH~-------- 131 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR----------------DLTEPVVELYGHQ-------- 131 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCccccc----------------CcccceEEEeecc--------
Confidence 45689999999999995 6789999999999999987655431 1223456788888
Q ss_pred ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (513)
Q Consensus 109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 188 (513)
..|.-++|+|... +.|++++.|.+|.+|++.+++....
T Consensus 132 ----rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~------------------------------------- 169 (472)
T KOG0303|consen 132 ----RRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALIT------------------------------------- 169 (472)
T ss_pred ----eeEEEEeecccch-hhHhhccCCceEEEEeccCCceeee-------------------------------------
Confidence 9999999999765 5899999999999999999863321
Q ss_pred ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287 189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 267 (513)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~ 267 (513)
..|.+.|.+++|+.+|.+|++. .|..|+|||.+++....
T Consensus 170 ----------------------------------------l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~ 209 (472)
T KOG0303|consen 170 ----------------------------------------LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS 209 (472)
T ss_pred ----------------------------------------cCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee
Confidence 2377889999999999999998 79999999999877654
Q ss_pred eecccCcccccccc-CCeEEEEEeCCCCeEEEEEeC---CCcEEEEEcCCcccccccceeeccccCCCCccccccccccE
Q 010287 268 NIVDVKPANMEDLT-EVITSAEFHPTHCNMLAYSSS---KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 343 (513)
Q Consensus 268 ~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 343 (513)
+ -.+|. .....+.|-.++ .++.+|.. +..+-+||..+-+... -...++.. +.|
T Consensus 210 e--------~~~heG~k~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~-~~~elDtS-------------nGv 266 (472)
T KOG0303|consen 210 E--------GVAHEGAKPARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEEPI-ALQELDTS-------------NGV 266 (472)
T ss_pred e--------cccccCCCcceeEEeccC-ceeeeccccccccceeccCcccccCcc-eeEEeccC-------------Cce
Confidence 3 13443 344567788888 64444432 6789999977644321 02222222 345
Q ss_pred EEEEEeecCCEEEEEe--CCeEEEEEccC
Q 010287 344 SDIKFARNGRHILSRD--YMTLKLWDINM 370 (513)
Q Consensus 344 ~~i~~sp~~~~l~~~~--~~~v~iwd~~~ 370 (513)
.---|.||...+..++ |+.|+.|.+..
T Consensus 267 l~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 267 LLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred EEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 5555678888777644 49999999985
No 192
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.77 E-value=4.4e-16 Score=151.75 Aligned_cols=293 Identities=15% Similarity=0.277 Sum_probs=180.5
Q ss_pred cccccccccceeccccccccccccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcc
Q 010287 12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (513)
Q Consensus 12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (513)
..+..|++.-. ...+...|+..|..++.++. +.++++|+.||+|++|+...-...+. .+
T Consensus 1029 ~p~~gW~p~G~----lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~----------------s~ 1088 (1431)
T KOG1240|consen 1029 SPPPGWNPRGI----LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG----------------SA 1088 (1431)
T ss_pred CCCCCCCccce----EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc----------------ee
Confidence 34555877643 22466778999999888776 59999999999999999753321100 00
Q ss_pred eEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccC
Q 010287 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (513)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (513)
+-...+... ...+.++.+++ +++.++.++.||.|++.++.........-..
T Consensus 1089 rS~ltys~~------------~sr~~~vt~~~--~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~--------------- 1139 (1431)
T KOG1240|consen 1089 RSELTYSPE------------GSRVEKVTMCG--NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQ--------------- 1139 (1431)
T ss_pred eeeEEEecc------------CCceEEEEecc--CCCeEEEEcCCCeEEEEEccccccccceeee---------------
Confidence 011111111 26788888876 5669999999999999998763211110000
Q ss_pred cccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CC-EEE
Q 010287 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GE-TFI 248 (513)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~-~l~ 248 (513)
.++.+. .....-|..-+|... +. .++
T Consensus 1140 ------------------------------------~ri~n~----------------~~~g~vv~m~a~~~~~~S~~lv 1167 (1431)
T KOG1240|consen 1140 ------------------------------------VRIPNL----------------KKDGVVVSMHAFTAIVQSHVLV 1167 (1431)
T ss_pred ------------------------------------eecccc----------------cCCCceEEeecccccccceeEE
Confidence 000000 000111333334332 22 556
Q ss_pred EE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287 249 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 327 (513)
Q Consensus 249 s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 327 (513)
.+ .-+.|..||.+.......+ ......+.|++++.+|.+ +++++|+..|.+.+||+|-+.. +..|+.+
T Consensus 1168 y~T~~~~iv~~D~r~~~~~w~l------k~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~----i~sw~~P 1236 (1431)
T KOG1240|consen 1168 YATDLSRIVSWDTRMRHDAWRL------KNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVP----ILSWEHP 1236 (1431)
T ss_pred EEEeccceEEecchhhhhHHhh------hcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCce----eecccCc
Confidence 66 7889999999866544432 233345779999999998 8999999999999999997765 3333322
Q ss_pred cCCCCccccccccccEEEEEEee---cCCEEEE-Ee-C-CeEEEEEccCCCCCeeeeecccccccccccccccC-----C
Q 010287 328 EAPGTRSFFTEIIASISDIKFAR---NGRHILS-RD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND-----S 396 (513)
Q Consensus 328 ~~~~~~~~~~~~~~~v~~i~~sp---~~~~l~~-~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 396 (513)
+..+++.+..+| .....++ +. . +.|.+|++.+ +..-..+..... ...+......+ .
T Consensus 1237 -----------~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl~~s~~-~p~ls~~~Ps~~~~kp~ 1303 (1431)
T KOG1240|consen 1237 -----------ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVLWASDG-APILSYALPSNDARKPD 1303 (1431)
T ss_pred -----------ccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc-CcceEEEEcCCC-CcchhhhcccccCCCCC
Confidence 225778887776 3345555 44 3 8999999996 555555544311 11111111111 0
Q ss_pred ccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 397 IFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 397 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
......+.+..-+.++.+|+.|..|+.||....
T Consensus 1304 ~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1304 SLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cccceeeecccCCceeeecCCccceeeccCCCc
Confidence 111223455556678999999999999998765
No 193
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.77 E-value=1.1e-16 Score=133.91 Aligned_cols=358 Identities=15% Similarity=0.158 Sum_probs=211.1
Q ss_pred EEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEE
Q 010287 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (513)
Q Consensus 40 ~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~ 119 (513)
-.+|||+|+|+|+.++. ++.|-|..+-+.. +-|. .-+.|.-|.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~-----------------------qlf~-------------cldki~yie 55 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLH-----------------------QLFL-------------CLDKIVYIE 55 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHH-----------------------HHHH-------------HHHHhhhee
Confidence 46799999999999866 7888886654431 1010 015688899
Q ss_pred EeecCCCceEEEe-ecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCC
Q 010287 120 WCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (513)
Q Consensus 120 ~~~~~~~~~l~s~-s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 198 (513)
|. .+..+++++ ..|+.|.+|++..-+........ ...-+...|||||+.+ .
T Consensus 56 W~--ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg---------------~agls~~~WSPdgrhi-----------L 107 (447)
T KOG4497|consen 56 WK--ADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG---------------QAGLSSISWSPDGRHI-----------L 107 (447)
T ss_pred ee--ccceeeeeeeeccceEEEEEeecceeEEEeccC---------------CCcceeeeECCCcceE-----------e
Confidence 94 566666665 77889999999876544332211 1222367899999754 1
Q ss_pred cCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCC-eEEEEEcCCCcceeeecccCcccc
Q 010287 199 FPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDL-RINLWNLEISNQSFNIVDVKPANM 277 (513)
Q Consensus 199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~-~i~vwd~~~~~~~~~~~~~~~~~~ 277 (513)
.....+-.|.+|.+.+....... -.+..+..++|+|+|++.+.+... ......+.. .+...++ ..+
T Consensus 108 ~tseF~lriTVWSL~t~~~~~~~--------~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~-c~~W~ll----~~f 174 (447)
T KOG4497|consen 108 LTSEFDLRITVWSLNTQKGYLLP--------HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS-CKAWILL----KEF 174 (447)
T ss_pred eeecceeEEEEEEeccceeEEec--------ccccCceeEEECCCCceeeeeecccHHHHHHHHh-hHHHHHH----Hhc
Confidence 44556778999999775543222 223446889999999998876311 111111110 0001100 122
Q ss_pred ccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEE
Q 010287 278 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 357 (513)
Q Consensus 278 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~ 357 (513)
.-.+-..+.+.|+||| +.++. ||---... +..++.. -.+..+.|+|.+++|+.
T Consensus 175 ~~dT~DltgieWsPdg-~~laV---------wd~~Leyk----v~aYe~~-------------lG~k~v~wsP~~qflav 227 (447)
T KOG4497|consen 175 KLDTIDLTGIEWSPDG-NWLAV---------WDNVLEYK----VYAYERG-------------LGLKFVEWSPCNQFLAV 227 (447)
T ss_pred CCCcccccCceECCCC-cEEEE---------ecchhhhe----eeeeeec-------------cceeEEEeccccceEEe
Confidence 2234456788899998 66653 54211100 1111111 24777889999999998
Q ss_pred EeC-CeEEEEEccC---CCC---------------------Cee-----------eeecccccccccccccc--------
Q 010287 358 RDY-MTLKLWDINM---DSG---------------------PVA-----------TFQVHEHLRPKLCDLYE-------- 393 (513)
Q Consensus 358 ~~~-~~v~iwd~~~---~~~---------------------~~~-----------~~~~~~~~~~~~~~~~~-------- 393 (513)
|+. +.+++.+--+ -++ +++ .+..|....+ ...|+
T Consensus 228 GsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~s--e~~YE~~~~pv~~ 305 (447)
T KOG4497|consen 228 GSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEES--ETIYEQQMTPVKV 305 (447)
T ss_pred eccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccc--hhhhhhhhcceee
Confidence 875 7777754211 000 000 0000000000 00000
Q ss_pred ------c---CCccceeeEEEeCCCCEEEEEeC--CCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCC
Q 010287 394 ------N---DSIFDKFECCLSGDGGRVATGSY--SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG 462 (513)
Q Consensus 394 ------~---~~~~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 462 (513)
. +...++-.++|++|..|++|-.+ -+.+.+||++.. ++...-....+|+...|.|...-|+.+....
T Consensus 306 ~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l--~l~avLiQk~piraf~WdP~~prL~vctg~s 383 (447)
T KOG4497|consen 306 HKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL--KLHAVLIQKHPIRAFEWDPGRPRLVVCTGKS 383 (447)
T ss_pred ecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh--hhhhhhhhccceeEEEeCCCCceEEEEcCCc
Confidence 0 01113557899999999998664 367999999854 3344445567899999999999888886555
Q ss_pred eEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEE
Q 010287 463 VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYM 510 (513)
Q Consensus 463 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i 510 (513)
.+.+ |.+.+....+ .-.-.-.|..+.|+-+|..|+..+.|...+
T Consensus 384 rLY~---W~psg~~~V~-vP~~GF~i~~l~W~~~g~~i~l~~kDafc~ 427 (447)
T KOG4497|consen 384 RLYF---WAPSGPRVVG-VPKKGFNIQKLQWLQPGEFIVLCGKDAFCV 427 (447)
T ss_pred eEEE---EcCCCceEEe-cCCCCceeeeEEecCCCcEEEEEcCCceEE
Confidence 5666 4433211111 111246799999999999999888776554
No 194
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=1.3e-15 Score=140.58 Aligned_cols=244 Identities=10% Similarity=0.079 Sum_probs=148.3
Q ss_pred CeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-CCCcEEEEE
Q 010287 234 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLID 310 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~vwd 310 (513)
....++++|++++|+++ .++.|.+|++...... .... .. ........++++|++ +++++++ .++.|.+|+
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~----~~-~~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~~ 108 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAA----ES-PLPGSPTHISTDHQG-RFLFSASYNANCVSVSP 108 (330)
T ss_pred CCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEee----ee-cCCCCceEEEECCCC-CEEEEEEcCCCeEEEEE
Confidence 35678999999998776 4899999999732222 1110 11 122346789999999 6555554 589999999
Q ss_pred cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCee----eeeccccc
Q 010287 311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVA----TFQVHEHL 384 (513)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~----~~~~~~~~ 384 (513)
+............+.. .....+++++|+++++++++ . +.|.+||+...+.... ......+.
T Consensus 109 ~~~~g~~~~~~~~~~~-------------~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~ 175 (330)
T PRK11028 109 LDKDGIPVAPIQIIEG-------------LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGA 175 (330)
T ss_pred ECCCCCCCCceeeccC-------------CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCC
Confidence 8643221111111111 12467788999999997755 3 9999999975232211 01111110
Q ss_pred ccccccccccCCccceeeEEEeCCCCEEEEEeC-CCcEEEEecCCCC-c--cceeecCC------CCceeEEEEcCCCCc
Q 010287 385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGCSEGS-A--ESTTLEAS------KNPMRRQVQTPSRPS 454 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~-~--~~~~~~~~------~~~v~~~~~~~~~~~ 454 (513)
. ...+.|+|++++++++.. ++.|.+|++.... . ....+... ......+.++|++++
T Consensus 176 -----------~---p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 176 -----------G---PRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred -----------C---CceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 0 126899999999988775 8999999997421 1 12222211 112235889999999
Q ss_pred eeeecC-CCeEEEecCCCCC-ccccCCccccccCCeeEEEEeCCCCEEEEEc--CCcEEEEe
Q 010287 455 RPLGSL-SGVVRRVKGADNS-ALDANGNAFDFSMKLLHLAWHPSENSIACAA--SNSLYMYY 512 (513)
Q Consensus 455 l~~~~~-d~~i~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~--~~~~~i~~ 512 (513)
++++.. ++.|.+.+-.... ...+.. ...-......++|+|||++|+++. ++.+.+|.
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~-~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEG-HQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeE-EEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 888754 6777772111000 000111 111123567899999999999766 67888874
No 195
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=1e-16 Score=142.67 Aligned_cols=224 Identities=16% Similarity=0.216 Sum_probs=156.0
Q ss_pred ccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEE
Q 010287 229 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 307 (513)
Q Consensus 229 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 307 (513)
.+|.+.+.+-.|+|+|.-|+++ .||.|++|... + .+.. .+.....+|+|++|.|+..+.+++.+ +.+.
T Consensus 101 ~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-G-MLRS-------tl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~ 169 (737)
T KOG1524|consen 101 SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-G-MLRS-------TVVQNEESIRCARWAPNSNSIVFCQG--GHIS 169 (737)
T ss_pred hhhhhhhhhcccCCCCceeeeecCCceEEEEecc-c-hHHH-------HHhhcCceeEEEEECCCCCceEEecC--CeEE
Confidence 5888999999999999999987 79999999865 2 2221 33445788999999999855555433 3444
Q ss_pred EEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccc
Q 010287 308 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRP 386 (513)
Q Consensus 308 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~ 386 (513)
+=-+..... +.. .+.|.+-|.++.|++...++++|++ -..+|||-. +.++..-..|+.+
T Consensus 170 IKpL~~n~k----~i~------------WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~-- 229 (737)
T KOG1524|consen 170 IKPLAANSK----IIR------------WRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ--GANLFTSAAEEYA-- 229 (737)
T ss_pred Eeecccccc----eeE------------EeccCcEEEEeecCccccceeecCCceeEEeeccc--CcccccCChhccc--
Confidence 433322211 111 4567789999999999999999775 899999986 7777777777765
Q ss_pred ccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 387 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 387 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
|++++|.|+ +.++.++. +++++=.++ .+.|..+.|++||..++.|...|.+.+
T Consensus 230 -------------ITSva~npd-~~~~v~S~-nt~R~~~p~------------~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 230 -------------ITSVAFNPE-KDYLLWSY-NTARFSSPR------------VGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred -------------eeeeeeccc-cceeeeee-eeeeecCCC------------ccceEEEEEcCCCceeeccccCceEEE
Confidence 679999999 66666665 355533333 347789999999999999999999887
Q ss_pred ---ecCCCCC-cc----------------ccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287 467 ---VKGADNS-AL----------------DANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 467 ---~~~~~~~-~~----------------~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 512 (513)
++..-.. .. ......+++.++|...+ -.-..|++++...+++|+
T Consensus 283 A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v~d~LE~p~rv~k~s--L~Y~hLvvaTs~qvyiys 346 (737)
T KOG1524|consen 283 AYAIEQQLVSGNLKATSKSRKSITVRDVATGVQDILEFPQRVVKFS--LGYGHLVVATSLQVYIYS 346 (737)
T ss_pred eeeehhhhhhccceeEeeccceEEeehhhhhHHHHhhCccceeeee--eceeEEEEEeccEEEEEe
Confidence 1000000 00 00112334556666655 344578888888899886
No 196
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=5.4e-16 Score=129.44 Aligned_cols=225 Identities=13% Similarity=0.178 Sum_probs=160.7
Q ss_pred cccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccc
Q 010287 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (513)
Q Consensus 35 ~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (513)
..+|+|.+|++|+..+|++..+..|.||...+.+. +....+++.|. ..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~--------------------w~~~htls~Hd------------~~ 57 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL--------------------WEPAHTLSEHD------------KI 57 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCC--------------------ceeceehhhhC------------cc
Confidence 47999999999999999999999999999876552 33456677787 88
Q ss_pred ceeEEEeecCCCceEEEeecCCeEEEEEc-cCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287 115 INKIRWCQSANSALYLLSTNDKTIKLWKV-QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (513)
Q Consensus 115 i~~i~~~~~~~~~~l~s~s~d~~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (513)
|+.|+|.| ..+.|++++.|+.-.||.. ..++.+....
T Consensus 58 vtgvdWap--~snrIvtcs~drnayVw~~~~~~~Wkptlv---------------------------------------- 95 (361)
T KOG1523|consen 58 VTGVDWAP--KSNRIVTCSHDRNAYVWTQPSGGTWKPTLV---------------------------------------- 95 (361)
T ss_pred eeEEeecC--CCCceeEccCCCCccccccCCCCeecccee----------------------------------------
Confidence 99999976 5558999999999999998 4554433321
Q ss_pred CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc
Q 010287 194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 272 (513)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~ 272 (513)
+..++..++++.|+|..+.|++| ....|.||.++.++.-.--.
T Consensus 96 ----------------------------------LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK-- 139 (361)
T KOG1523|consen 96 ----------------------------------LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK-- 139 (361)
T ss_pred ----------------------------------EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh--
Confidence 23555678999999999999999 68899999998554331110
Q ss_pred CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCc--cccccccccEEEEEEee
Q 010287 273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR--SFFTEIIASISDIKFAR 350 (513)
Q Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~i~~sp 350 (513)
+.-..+.+.|+++.|+|++ -++++|+.|+..++|..--.....++...--+.+.+... .-+....+.+..+.|+|
T Consensus 140 --hikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~ 216 (361)
T KOG1523|consen 140 --HIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP 216 (361)
T ss_pred --hhCCccccceeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC
Confidence 1113467889999999998 899999999999999754222111110000000000000 00112347899999999
Q ss_pred cCCEEEE-EeCCeEEEEEccCCC
Q 010287 351 NGRHILS-RDYMTLKLWDINMDS 372 (513)
Q Consensus 351 ~~~~l~~-~~~~~v~iwd~~~~~ 372 (513)
+|..|+- +.|..+.+-|...+.
T Consensus 217 sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 217 SGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCCEeeEecCCCceEEeecCCCc
Confidence 9999886 567999998877533
No 197
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=3.9e-15 Score=140.74 Aligned_cols=305 Identities=17% Similarity=0.252 Sum_probs=201.2
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
..+.|+-.++|.++||+++++|+|..||+|.+|.--.... +-.-.+.++-|.
T Consensus 200 ~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-------------------~~~t~t~lHWH~--------- 251 (792)
T KOG1963|consen 200 ITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-------------------DSETCTLLHWHH--------- 251 (792)
T ss_pred hhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-------------------ccccceEEEecc---------
Confidence 3557888899999999999999999999999998432110 000123456676
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
+.|+++.|+ .+|.+|++|+..+.+.+|.+.+++.+.
T Consensus 252 ---~~V~~L~fS--~~G~~LlSGG~E~VLv~Wq~~T~~kqf--------------------------------------- 287 (792)
T KOG1963|consen 252 ---DEVNSLSFS--SDGAYLLSGGREGVLVLWQLETGKKQF--------------------------------------- 287 (792)
T ss_pred ---cccceeEEe--cCCceEeecccceEEEEEeecCCCccc---------------------------------------
Confidence 789999995 588999999999999999999886221
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~ 268 (513)
+..-..+|..+.++||+.+.+.. .|+.|.+....+......
T Consensus 288 --------------------------------------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t 329 (792)
T KOG1963|consen 288 --------------------------------------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST 329 (792)
T ss_pred --------------------------------------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence 12223568899999999998887 899999998765443333
Q ss_pred ecccCcc---ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287 269 IVDVKPA---NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 345 (513)
Q Consensus 269 ~~~~~~~---~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 345 (513)
+-.+.+. .-....+-.+.++++|.- +.++..+..|.|.+||+.+.....+ +.......... ...+.-.++.
T Consensus 330 Isgi~~~~~~~k~~~~~l~t~~~idpr~-~~~vln~~~g~vQ~ydl~td~~i~~-~~v~~~n~~~~----~~n~~v~ita 403 (792)
T KOG1963|consen 330 ISGIKPPTPSTKTRPQSLTTGVSIDPRT-NSLVLNGHPGHVQFYDLYTDSTIYK-LQVCDENYSDG----DVNIQVGITA 403 (792)
T ss_pred ccCccCCCccccccccccceeEEEcCCC-CceeecCCCceEEEEeccccceeee-EEEEeecccCC----cceeEEeeee
Confidence 3222221 111234556788999965 7888899999999999987665322 22211111110 0123346788
Q ss_pred EEEeecCCEEEEEe---------C--CeEEEEEccCCCCCe---e-eeecccccccccccccccCCccceeeEEE-eCCC
Q 010287 346 IKFARNGRHILSRD---------Y--MTLKLWDINMDSGPV---A-TFQVHEHLRPKLCDLYENDSIFDKFECCL-SGDG 409 (513)
Q Consensus 346 i~~sp~~~~l~~~~---------~--~~v~iwd~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~ 409 (513)
++.+-.|.++++.. + -.+++|-.....+-. . ....|... +...++ ++..
T Consensus 404 v~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~---------------~vat~~~~~~r 468 (792)
T KOG1963|consen 404 VARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNA---------------FVATIFLNPTR 468 (792)
T ss_pred ehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCce---------------eEEEEEecCcc
Confidence 88888899999842 1 357788766322111 1 11223322 113333 3333
Q ss_pred -CEEEEEeCCCcEEEEecCCCCccc---------eeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 410 -GRVATGSYSNLFRVFGCSEGSAES---------TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 410 -~~l~~~~~dg~i~vwd~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
...++++.||.+++|-+...+... ..-..|..++...+|+.||..|+. +.|+.|.+
T Consensus 469 s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~-s~~~~Iti 534 (792)
T KOG1963|consen 469 SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAV-SFDDTITI 534 (792)
T ss_pred cceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEE-ecCCEEEE
Confidence 378899999999999884332111 111146889999999999966555 56888888
No 198
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=6.8e-16 Score=146.73 Aligned_cols=170 Identities=14% Similarity=0.101 Sum_probs=110.5
Q ss_pred EEEeccCCCEEEEE--cCCeEEEE--EcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287 237 SISNNSDGETFISA--DDLRINLW--NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 312 (513)
Q Consensus 237 ~~~~~~~~~~l~s~--~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 312 (513)
.++|+|||+.|+.+ .+|.+.|| |+.++. .. .+..+...+..+.|+|++..+++++..+|...+|++.
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~--------~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~ 322 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PS--------QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMS 322 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eE--------eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEE
Confidence 57899999988875 47766555 554332 21 3344566678999999993344455567888999875
Q ss_pred CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeeccccccccccccc
Q 010287 313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLY 392 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (513)
..... ...+ ++.. ....|+|||++|+..+...+.+||+.. +...........
T Consensus 323 ~~~~~---~~~l-------------~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~-g~~~~lt~~~~~--------- 374 (429)
T PRK01742 323 ASGGG---ASLV-------------GGRG--YSAQISADGKTLVMINGDNVVKQDLTS-GSTEVLSSTFLD--------- 374 (429)
T ss_pred CCCCC---eEEe-------------cCCC--CCccCCCCCCEEEEEcCCCEEEEECCC-CCeEEecCCCCC---------
Confidence 43211 1111 1112 346799999999886654566799875 443221111111
Q ss_pred ccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC-CCccceeecCCCCceeEEEEcCC
Q 010287 393 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE-GSAESTTLEASKNPMRRQVQTPS 451 (513)
Q Consensus 393 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~ 451 (513)
..+.|+|||++|+.++.++...+|++.. .+.....+..|...+...+|+|-
T Consensus 375 --------~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 375 --------ESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred --------CCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 1578999999999999899888887632 12445667777777888888875
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=1.4e-14 Score=123.49 Aligned_cols=159 Identities=11% Similarity=0.162 Sum_probs=118.1
Q ss_pred CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe--CCCcEEEEE
Q 010287 233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLID 310 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~vwd 310 (513)
..|.++.++. +.|+++-...|+|||+++.+.+..+. ....+...+..+.+++.+ .+++.-+ ..|.|.+||
T Consensus 88 t~IL~VrmNr--~RLvV~Lee~IyIydI~~MklLhTI~-----t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d 159 (391)
T KOG2110|consen 88 TSILAVRMNR--KRLVVCLEESIYIYDIKDMKLLHTIE-----TTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFD 159 (391)
T ss_pred CceEEEEEcc--ceEEEEEcccEEEEecccceeehhhh-----ccCCCccceEeeccCCCC-ceEEecCCCCCceEEEEE
Confidence 4477777765 46777744449999999877655442 223345557777777766 5666433 378999999
Q ss_pred cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-C-eEEEEEccCCCCCeeeeeccccccccc
Q 010287 311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M-TLKLWDINMDSGPVATFQVHEHLRPKL 388 (513)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~-~v~iwd~~~~~~~~~~~~~~~~~~~~~ 388 (513)
+.+-+. ... +..|++.+.+++|+++|.+||++++ | .|+||.+.. ++.+..++.......
T Consensus 160 ~~nl~~----v~~------------I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~~-- 220 (391)
T KOG2110|consen 160 TINLQP----VNT------------INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPVS-- 220 (391)
T ss_pred ccccee----eeE------------EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeeeeCCceeeE--
Confidence 877554 222 4567799999999999999999998 5 568999986 888887765443322
Q ss_pred ccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 389 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 389 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
|.+++|+|++++|++.+..++|++|.++..
T Consensus 221 -----------IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 221 -----------IYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred -----------EEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 559999999999999999999999998754
No 200
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.70 E-value=3.3e-13 Score=130.45 Aligned_cols=318 Identities=23% Similarity=0.370 Sum_probs=213.7
Q ss_pred ccEEEEEE-cCCCC-EEEeecC-CCcEEEEEeeC-CCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccc
Q 010287 36 DIISAIEF-DKSGD-HLATGDR-GGRVVLFERTD-TRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (513)
Q Consensus 36 ~~V~~v~~-sp~g~-~latg~~-dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (513)
..+..+.+ ++++. +++..+. |+.+.+|+... .. ....+..|.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-----------------------~~~~~~~~~----------- 155 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK-----------------------LIRTLEGHS----------- 155 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEecCCCe-----------------------EEEEEecCc-----------
Confidence 47788777 88887 5555444 99999999875 22 234567777
Q ss_pred cccceeEEEeecCCCceEEEeec-CCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 112 EEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 112 ~~~i~~i~~~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
..|..++|+| ++..+++++. |+.+++|++..+.....
T Consensus 156 -~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 193 (466)
T COG2319 156 -ESVTSLAFSP--DGKLLASGSSLDGTIKLWDLRTGKPLST--------------------------------------- 193 (466)
T ss_pred -ccEEEEEECC--CCCEEEecCCCCCceEEEEcCCCceEEe---------------------------------------
Confidence 7899999965 6557888775 99999999987432221
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCC-EEEEE-cCCeEEEEEcCCCcceee
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~vwd~~~~~~~~~ 268 (513)
+.+|...|.+++|+|++. .++++ .|+.|++||...+.....
T Consensus 194 -------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~ 236 (466)
T COG2319 194 -------------------------------------LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS 236 (466)
T ss_pred -------------------------------------eccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee
Confidence 234778899999999988 55553 699999998774333221
Q ss_pred ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 348 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 348 (513)
.+.+|.... ...|+|++ ..+++++.|+.+++|+++.... ....+ .+|...+.++.|
T Consensus 237 -------~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~---~~~~~------------~~~~~~v~~~~~ 292 (466)
T COG2319 237 -------TLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSS---LLRTL------------SGHSSSVLSVAF 292 (466)
T ss_pred -------ecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCc---EEEEE------------ecCCccEEEEEE
Confidence 245666664 33899998 8888999999999999986553 01111 233478999999
Q ss_pred eecCCEEEEEe-CCeEEEEEccCCCCCeeeee--cccccccccccccccCCccceeeEEEeCCCCEEEEE-eCCCcEEEE
Q 010287 349 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQ--VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVF 424 (513)
Q Consensus 349 sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vw 424 (513)
+|++..+++++ ++.+.+|+... ........ .|... +..+.|.+++..++.+ ..|+.+.+|
T Consensus 293 ~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~d~~~~~~ 356 (466)
T COG2319 293 SPDGKLLASGSSDGTVRLWDLET-GKLLSSLTLKGHEGP---------------VSSLSFSPDGSLLVSGGSDDGTIRLW 356 (466)
T ss_pred CCCCCEEEEeeCCCcEEEEEcCC-CceEEEeeecccCCc---------------eEEEEECCCCCEEEEeecCCCcEEee
Confidence 99888888865 47799998875 44443333 33331 3367773343556655 678999999
Q ss_pred ecCCCCccceeecCCCCceeEEEEcCCCCceee-ecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEE
Q 010287 425 GCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL-GSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 503 (513)
Q Consensus 425 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~ 503 (513)
+..... ........ ..+..+.+.+ ...... +..++.+.+ +.............+...+....+++++..++.+
T Consensus 357 ~~~~~~-~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (466)
T COG2319 357 DLRTGK-PLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDGTVRL---WDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430 (466)
T ss_pred ecCCCc-eeEEecCC-ceEEEEEECC-CCCEEEEecCCCceEE---EecccCeeeeeccCCCCcEEEEEECCCCcEEEEe
Confidence 998774 22222222 2277888888 544444 678888888 2222111111111111789999999999999874
Q ss_pred c-CCcEEEEe
Q 010287 504 A-SNSLYMYY 512 (513)
Q Consensus 504 ~-~~~~~i~~ 512 (513)
+ ++.+.+|.
T Consensus 431 ~~~~~~~~~~ 440 (466)
T COG2319 431 SSDNTIRLWD 440 (466)
T ss_pred cCCCcEEEEe
Confidence 4 66777764
No 201
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=8e-16 Score=133.36 Aligned_cols=196 Identities=15% Similarity=0.140 Sum_probs=143.1
Q ss_pred EEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCc
Q 010287 236 NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 314 (513)
Q Consensus 236 ~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 314 (513)
.+++|+.+|..++++ .||++|+|+........ ....|...|.++.|+||+ ++|++-+.| ..+||+.+++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l--------~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL--------EEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh--------hhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccC
Confidence 679999999999998 79999999965444332 446688899999999999 999999999 9999999998
Q ss_pred ccccccceeeccccCCCCccccccccccEEEEEEeecC---CEEEEE--eC-CeEEEEEccCCCCCeeeeeccccccccc
Q 010287 315 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG---RHILSR--DY-MTLKLWDINMDSGPVATFQVHEHLRPKL 388 (513)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~---~~l~~~--~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 388 (513)
..... ..... -......+.|+.|+ .+.+.+ .. +.|+.|++..-..- ..++.....
T Consensus 218 ~~~a~----~t~~~----------k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~---- 278 (398)
T KOG0771|consen 218 AALAR----KTPFS----------KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKI---- 278 (398)
T ss_pred chhhh----cCCcc----------cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhh----
Confidence 54322 11111 11346667888765 333332 23 77888777541110 111111100
Q ss_pred ccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 389 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 389 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.....|++++.++||++++.|+.||.|.+++..+.+.....-+.|...|+.+.|+|+.+++++-+.|....+
T Consensus 279 ------~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 279 ------KRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred ------hccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 011125599999999999999999999999999876666777899999999999999999999888877777
No 202
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.69 E-value=3.3e-15 Score=123.06 Aligned_cols=208 Identities=7% Similarity=0.166 Sum_probs=152.7
Q ss_pred ccccccEEEEEEcC-CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 32 ~~h~~~V~~v~~sp-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
.++..++++..|+. +-++|.+.+-|-+..|||++++.. +.+.+++-+|+
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~--------------------~~vkTQLIAHD---------- 196 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS--------------------GTVKTQLIAHD---------- 196 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccc--------------------cceeeEEEecC----------
Confidence 35678999999987 467999999999999999987631 12446778888
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
+.|+.|+|.. ..-..|++.+.||.+|++|++..+-..+.--.
T Consensus 197 --KEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~----------------------------------- 238 (364)
T KOG0290|consen 197 --KEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYED----------------------------------- 238 (364)
T ss_pred --cceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecC-----------------------------------
Confidence 7899999964 22357888999999999999876432221100
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CCEEEEE--cCCeEEEEEcCCCccee
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA--DDLRINLWNLEISNQSF 267 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~--~d~~i~vwd~~~~~~~~ 267 (513)
.....+...++|++. -+++++- +...|.+.|++.....+
T Consensus 239 --------------------------------------p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv 280 (364)
T KOG0290|consen 239 --------------------------------------PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV 280 (364)
T ss_pred --------------------------------------CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce
Confidence 011244677889884 5666663 68889999999766544
Q ss_pred eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccc--ccccceeeccccCCCCccccccccccEEE
Q 010287 268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL--CDTHSKLFEEQEAPGTRSFFTEIIASISD 345 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 345 (513)
. .+++|.+.|+.++|.|..+..|.+++.|..+.+||+..... ...++..+. ..+.|..
T Consensus 281 a-------~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-------------a~~EVNq 340 (364)
T KOG0290|consen 281 A-------RLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-------------AGGEVNQ 340 (364)
T ss_pred e-------hhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-------------ccceeee
Confidence 3 78999999999999999889999999999999999976322 111111221 2367999
Q ss_pred EEEee-cCCEEEEEeCCeEEE
Q 010287 346 IKFAR-NGRHILSRDYMTLKL 365 (513)
Q Consensus 346 i~~sp-~~~~l~~~~~~~v~i 365 (513)
+.|+| .+.+++.+....+.+
T Consensus 341 i~Ws~~~~Dwiai~~~kklei 361 (364)
T KOG0290|consen 341 IQWSSSQPDWIAICFGKKLEI 361 (364)
T ss_pred eeecccCCCEEEEEecCeeeE
Confidence 99997 677888877655544
No 203
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3e-15 Score=126.09 Aligned_cols=266 Identities=11% Similarity=0.137 Sum_probs=164.4
Q ss_pred cccccccccEEEEEEcC--CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccc
Q 010287 29 GEEVQEVDIISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (513)
Q Consensus 29 ~~~~~h~~~V~~v~~sp--~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (513)
.++.+|...++-+.|.. .+..+.+++.||+|++||+...... ....+..|.+
T Consensus 64 ~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~---------------------a~~~~~~~~~----- 117 (376)
T KOG1188|consen 64 EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES---------------------ARISWTQQSG----- 117 (376)
T ss_pred heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh---------------------hheeccCCCC-----
Confidence 35667888888898876 4678999999999999998766542 1112223321
Q ss_pred ccccccccceeEEEeecCCCceEEEee----cCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccC
Q 010287 107 KSLEIEEKINKIRWCQSANSALYLLST----NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN 182 (513)
Q Consensus 107 ~~~~~~~~i~~i~~~~~~~~~~l~s~s----~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (513)
.+-.+++- ..++..+++++ .|-.|.+||++..+..
T Consensus 118 ------~~f~~ld~--nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~--------------------------------- 156 (376)
T KOG1188|consen 118 ------TPFICLDL--NCKKNIIACGTELTRSDASVVLWDVRSEQQL--------------------------------- 156 (376)
T ss_pred ------CcceEeec--cCcCCeEEeccccccCceEEEEEEeccccch---------------------------------
Confidence 33455554 33445666653 3667888988765421
Q ss_pred CCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEEEEE-cCCeEEEEEc
Q 010287 183 GGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNL 260 (513)
Q Consensus 183 g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~vwd~ 260 (513)
.+.+...|.+.|+++.|+| +.++|++| -||-|.++|+
T Consensus 157 -----------------------------------------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 157 -----------------------------------------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred -----------------------------------------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 1122468899999999999 56788888 5999999999
Q ss_pred CCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccccccc
Q 010287 261 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 340 (513)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (513)
+.....-.+. ..-.|...|.++.|..++-+.|.+-+..+...+|++..+..... ++.+.....-.-.....
T Consensus 196 ~~d~EeDaL~-----~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~----~~~~~~~~~d~r~~~~~ 266 (376)
T KOG1188|consen 196 KKDNEEDALL-----HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW----LENPDVSADDLRKEDNC 266 (376)
T ss_pred CCCcchhhHH-----HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc----ccCccchhhhHHhhhhh
Confidence 8553221111 23456788999999988756789999999999999988764211 11110000000000001
Q ss_pred ccEEEEEEee-cCCEEEE-EeC-CeEEEEEccC--CC---CCeeeeec-ccccccccccccccCCccceeeEEEeCCCCE
Q 010287 341 ASISDIKFAR-NGRHILS-RDY-MTLKLWDINM--DS---GPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGR 411 (513)
Q Consensus 341 ~~v~~i~~sp-~~~~l~~-~~~-~~v~iwd~~~--~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 411 (513)
..+... .+| +...++. |++ +...++-+.. .+ ..+..+.+ |... |.++.|...+.+
T Consensus 267 dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~ei---------------VR~i~~~~~~~~ 330 (376)
T KOG1188|consen 267 DYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEI---------------VRDILFDVKNDV 330 (376)
T ss_pred hheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHH---------------HHHHhhhcccce
Confidence 122222 223 4444443 554 6666665541 12 22333333 3322 236778888899
Q ss_pred EEEEeCCCcEEEEecC
Q 010287 412 VATGSYSNLFRVFGCS 427 (513)
Q Consensus 412 l~~~~~dg~i~vwd~~ 427 (513)
+.||+.||.+.+|...
T Consensus 331 l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 331 LYTGGEDGLLQAWKVE 346 (376)
T ss_pred eeccCCCceEEEEecC
Confidence 9999999999999853
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=8.2e-16 Score=133.31 Aligned_cols=194 Identities=15% Similarity=0.122 Sum_probs=137.0
Q ss_pred EEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEE
Q 010287 285 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLK 364 (513)
Q Consensus 285 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~ 364 (513)
.+++|+++| ..+++++.||++|+|+..+..... + ...|.+.|.++.|+|||++|++-+....+
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l------~----------e~~~~~eV~DL~FS~dgk~lasig~d~~~ 210 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTIL------E----------EIAHHAEVKDLDFSPDGKFLASIGADSAR 210 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhh------h----------hHhhcCccccceeCCCCcEEEEecCCceE
Confidence 789999998 999999999999999965543311 1 34567899999999999999984433899
Q ss_pred EEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC---CE--EEEEeCCCcEEEEecCCCCc----ccee
Q 010287 365 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG---GR--VATGSYSNLFRVFGCSEGSA----ESTT 435 (513)
Q Consensus 365 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~--l~~~~~dg~i~vwd~~~~~~----~~~~ 435 (513)
||++++ +..+.......... . ...+.|+.|+ .+ .+.....+.|+.|++..... ....
T Consensus 211 VW~~~~-g~~~a~~t~~~k~~----------~---~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~ 276 (398)
T KOG0771|consen 211 VWSVNT-GAALARKTPFSKDE----------M---FSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK 276 (398)
T ss_pred EEEecc-CchhhhcCCcccch----------h---hhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh
Confidence 999997 65555544222110 0 1267888777 33 33334556788877765433 1122
Q ss_pred ecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEE
Q 010287 436 LEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMY 511 (513)
Q Consensus 436 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~ 511 (513)
.....+.+.++.++++|+++|.|+.||.|-+++..++.. .......|..-|+.+.|+||.+++++.+ ++...+.
T Consensus 277 ~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~--~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 277 KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR--LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee--eEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 223345789999999999999999999999966665542 2222335888999999999999999544 5555443
No 205
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=2.9e-15 Score=142.47 Aligned_cols=218 Identities=13% Similarity=0.143 Sum_probs=137.5
Q ss_pred cccCCeEEEEeccCCCEEEEE-c---CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEE-eCCC
Q 010287 230 AHDYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS-SSKG 304 (513)
Q Consensus 230 ~h~~~v~~~~~~~~~~~l~s~-~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg 304 (513)
.|...+.+.+|+|+|+.|+.. . +..|++||+.++.... +. .+.++ ...++|+||+ +.|+.+ +.+|
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~-----~~~g~---~~~~~wSPDG-~~La~~~~~~g 270 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VA-----SFRGH---NGAPAFSPDG-SRLAFASSKDG 270 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-Ee-----cCCCc---cCceeECCCC-CEEEEEEecCC
Confidence 455668899999999999875 2 3479999998654321 10 22333 3468999999 666554 5688
Q ss_pred cEEEE--EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeec
Q 010287 305 SIRLI--DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQV 380 (513)
Q Consensus 305 ~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~ 380 (513)
.+.|| |+.++.. ..+ ..+...+....|+|||+.|+..++ +...||++...+.....+ .
T Consensus 271 ~~~Iy~~d~~~~~~-----~~l------------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~ 332 (429)
T PRK01742 271 VLNIYVMGANGGTP-----SQL------------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G 332 (429)
T ss_pred cEEEEEEECCCCCe-----Eee------------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c
Confidence 77666 5544432 111 222245778999999998876543 788888876533333322 1
Q ss_pred ccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecC
Q 010287 381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 460 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 460 (513)
+.. ....|+|||++|+..+.++ +.+||+.++..... .... ......|+|+++.|++++.
T Consensus 333 ~~~-----------------~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~l-t~~~--~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 333 GRG-----------------YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVL-SSTF--LDESPSISPNGIMIIYSST 391 (429)
T ss_pred CCC-----------------CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEe-cCCC--CCCCceECCCCCEEEEEEc
Confidence 111 1467999999998887765 56699987743321 1221 2346789999999999988
Q ss_pred CCeEEEecCCCCCccccCCccccccCCeeEEEEeCCC
Q 010287 461 SGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSE 497 (513)
Q Consensus 461 d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~ 497 (513)
++.+.+.......+ ........|.+.+...+|||--
T Consensus 392 ~g~~~~l~~~~~~G-~~~~~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 392 QGLGKVLQLVSADG-RFKARLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred CCCceEEEEEECCC-CceEEccCCCCCCCCcccCCCC
Confidence 88776511111100 0111222467788999999853
No 206
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.68 E-value=2.1e-16 Score=147.85 Aligned_cols=269 Identities=17% Similarity=0.212 Sum_probs=191.1
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
.+|+|..| +..|.++++++.|..++||.++++.+...
T Consensus 191 naVyca~f--Drtg~~Iitgsdd~lvKiwS~et~~~lAs----------------------------------------- 227 (1113)
T KOG0644|consen 191 NAVYCAIF--DRTGRYIITGSDDRLVKIWSMETARCLAS----------------------------------------- 227 (1113)
T ss_pred hheeeeee--ccccceEeecCccceeeeeeccchhhhcc-----------------------------------------
Confidence 89999999 77889999999999999999888764332
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
..||.+.|+.++.+.+..+++++ .|..|++|.+.++... .
T Consensus 228 -----------------------------------~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pv-s--- 268 (1113)
T KOG0644|consen 228 -----------------------------------CRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPV-S--- 268 (1113)
T ss_pred -----------------------------------CCCCccccchhccchhhhhhhhcccCceEEEEecCCCchH-H---
Confidence 36899999999999988888888 6999999999876543 2
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 351 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 351 (513)
.+.+|++.|++++|+|.. +.+.||++++||.+-.. +.+.... . .......+.++.|...
T Consensus 269 ----vLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~------~~y~prp----~--~~~~~~~~~s~~~~~~ 327 (1113)
T KOG0644|consen 269 ----VLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEP------RIYVPRP----L--KFTEKDLVDSILFENN 327 (1113)
T ss_pred ----HHhccccceeeeccCccc-----cCCCCCceEeccccccc------cccCCCC----C--Ccccccceeeeecccc
Confidence 468999999999999963 67899999999988211 1111000 0 0011145677778888
Q ss_pred CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC-CCEEEEEeCCCcEEEEecCCC
Q 010287 352 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 352 ~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~ 429 (513)
+.-++++++ +.-..|.+.. +..+.... + -+.++.| ..+.+++-.+..+.+|++.++
T Consensus 328 ~~~f~Tgs~d~ea~n~e~~~-------l~~~~~~l--------------i-f~t~ssd~~~~~~~ar~~~~~~vwnl~~g 385 (1113)
T KOG0644|consen 328 GDRFLTGSRDGEARNHEFEQ-------LAWRSNLL--------------I-FVTRSSDLSSIVVTARNDHRLCVWNLYTG 385 (1113)
T ss_pred ccccccccCCcccccchhhH-------hhhhccce--------------E-EEeccccccccceeeeeeeEeeeeecccc
Confidence 888888875 7777766542 01111100 0 0111112 246677778889999999988
Q ss_pred CccceeecCCCCceeEEEEcCCCCce-eeecCCCeEEEecCCCCCcc-ccCCccccccCCeeEEEEeCCCCEEEEEc-CC
Q 010287 430 SAESTTLEASKNPMRRQVQTPSRPSR-PLGSLSGVVRRVKGADNSAL-DANGNAFDFSMKLLHLAWHPSENSIACAA-SN 506 (513)
Q Consensus 430 ~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~ 506 (513)
.+...+.+|..++..+.++|-...+ .+++.||...| |..+.. .+.....+ ...+...+||+||..++... .+
T Consensus 386 -~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~i---wdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hg 460 (1113)
T KOG0644|consen 386 -QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTII---WDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHG 460 (1113)
T ss_pred -hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEe---eecccCCcceeeecc-cceeeccccCCCCceEecCCCCC
Confidence 6668899999999999999987765 57899999999 444311 11111122 45677889999999888554 66
Q ss_pred cEEEE
Q 010287 507 SLYMY 511 (513)
Q Consensus 507 ~~~i~ 511 (513)
.++|+
T Consensus 461 ql~i~ 465 (1113)
T KOG0644|consen 461 QLYIL 465 (1113)
T ss_pred ceEEe
Confidence 66665
No 207
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=7.2e-14 Score=118.82 Aligned_cols=269 Identities=12% Similarity=0.131 Sum_probs=165.9
Q ss_pred cccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccc
Q 010287 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (513)
Q Consensus 35 ~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (513)
.-.+.-++|++.-..+|++..|-.|+||+-..... ..++.-. +..
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p------------------------t~Lks~s-----------Qrn 142 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP------------------------TKLKSVS-----------QRN 142 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC------------------------ceecchh-----------hcc
Confidence 45678899999877889999999999999655221 1111111 266
Q ss_pred ceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCC
Q 010287 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (513)
Q Consensus 115 i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (513)
|++++|-|... ..|+.|+..| |.+|.....-.... ..
T Consensus 143 vtclawRPlsa-selavgCr~g-IciW~~s~tln~~r-~~---------------------------------------- 179 (445)
T KOG2139|consen 143 VTCLAWRPLSA-SELAVGCRAG-ICIWSDSRTLNANR-NI---------------------------------------- 179 (445)
T ss_pred eeEEEeccCCc-ceeeeeecce-eEEEEcCccccccc-cc----------------------------------------
Confidence 99999987443 4677777666 89998764321100 00
Q ss_pred CCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeeccc
Q 010287 195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDV 272 (513)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~ 272 (513)
...+.....+ . .-.+| ..|+++.|++||..++++ .|..|.+||..++....-
T Consensus 180 -----~~~s~~~~qv--------------l--~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL---- 233 (445)
T KOG2139|consen 180 -----RMMSTHHLQV--------------L--QDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL---- 233 (445)
T ss_pred -----ccccccchhh--------------e--eCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc----
Confidence 0000000000 0 01344 569999999999999998 599999999997765421
Q ss_pred CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC
Q 010287 273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 352 (513)
Q Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~ 352 (513)
. ....+.+.-+.|+||+ .+|+++.-|+..++|+........+ ..-..+.|...+|+|+|
T Consensus 234 ---~-~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~er----------------w~lgsgrvqtacWspcG 292 (445)
T KOG2139|consen 234 ---I-PKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKER----------------WILGSGRVQTACWSPCG 292 (445)
T ss_pred ---c-ccCCCceeeEEEcCCC-CEEEEecccceeeeehhcccceecc----------------eeccCCceeeeeecCCC
Confidence 1 1234568899999999 8899999999999996543221110 01112579999999999
Q ss_pred CEEEEEeCCeEEEEEccCCCCCeeeee-cccccccccccccccC-------CccceeeEEEeCCCCEEEEEeCCC-----
Q 010287 353 RHILSRDYMTLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYEND-------SIFDKFECCLSGDGGRVATGSYSN----- 419 (513)
Q Consensus 353 ~~l~~~~~~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~dg----- 419 (513)
++|+-...+.-.+|.+...++...... ........+.++.+.. +--+..+++|.|.|++|++.-..+
T Consensus 293 sfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~ 372 (445)
T KOG2139|consen 293 SFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLL 372 (445)
T ss_pred CEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhh
Confidence 998876666667777765333322211 0000011111111110 011244899999999999765443
Q ss_pred ---cEEEEecCC
Q 010287 420 ---LFRVFGCSE 428 (513)
Q Consensus 420 ---~i~vwd~~~ 428 (513)
.|.+||...
T Consensus 373 ~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 373 CKLHISRFDTRK 384 (445)
T ss_pred hhhhhhhhcccc
Confidence 355666553
No 208
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.68 E-value=1.7e-14 Score=121.05 Aligned_cols=320 Identities=12% Similarity=0.106 Sum_probs=191.2
Q ss_pred cccEEEEEEcCCCCEEEe-ecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287 35 VDIISAIEFDKSGDHLAT-GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (513)
Q Consensus 35 ~~~V~~v~~sp~g~~lat-g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (513)
-+.|.-+.|..|..++++ ...++.|.+|++...+. ...+..-. .
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-----------------------~ckIdeg~------------a 92 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-----------------------YCKIDEGQ------------A 92 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-----------------------EEEeccCC------------C
Confidence 478888999998776655 56788999999865432 12222222 7
Q ss_pred cceeEEEeecCCCceE-EEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 114 KINKIRWCQSANSALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 114 ~i~~i~~~~~~~~~~l-~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
++.+++|+| +|+.+ .++.-|-.|.+|.+.+.+...+.-... .....+|.|||++..+..-.
T Consensus 93 gls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~----------------~~kg~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 93 GLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYLLPHPKT----------------NVKGYAFHPDGQFCAILSRR 154 (447)
T ss_pred cceeeeECC--CcceEeeeecceeEEEEEEeccceeEEeccccc----------------CceeEEECCCCceeeeeecc
Confidence 799999966 77454 455779999999998876544322111 11256888888865332111
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEc---CCeEEEEEcCCCcceeee
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD---DLRINLWNLEISNQSFNI 269 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~---d~~i~vwd~~~~~~~~~~ 269 (513)
......++.... .....+. ..-.+-..+.+.|+|||..|++=+ +-.|..|..
T Consensus 155 ------------DCkdyv~i~~c~---~W~ll~~-f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~--------- 209 (447)
T KOG4497|consen 155 ------------DCKDYVQISSCK---AWILLKE-FKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER--------- 209 (447)
T ss_pred ------------cHHHHHHHHhhH---HHHHHHh-cCCCcccccCceECCCCcEEEEecchhhheeeeeee---------
Confidence 000000000000 0000000 112233467899999998887631 333332221
Q ss_pred cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccc----------------------------c
Q 010287 270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH----------------------------S 321 (513)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----------------------------~ 321 (513)
.-.+..++|+|.+ ++++.|+.|+.+|+.+--+-+...+. +
T Consensus 210 -----------~lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cL 277 (447)
T KOG4497|consen 210 -----------GLGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCL 277 (447)
T ss_pred -----------ccceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccc
Confidence 2347789999988 89999999999987553321110000 0
Q ss_pred ----eeeccccCCCC------------------ccccccccccEEEEEEeecCCEEEEEeC---CeEEEEEccCCCCCee
Q 010287 322 ----KLFEEQEAPGT------------------RSFFTEIIASISDIKFARNGRHILSRDY---MTLKLWDINMDSGPVA 376 (513)
Q Consensus 322 ----~~~~~~~~~~~------------------~~~~~~~~~~v~~i~~sp~~~~l~~~~~---~~v~iwd~~~~~~~~~ 376 (513)
..++.+.-+.. ..-+......+.-++|++|..++++-.| ..+.+||++. .+...
T Consensus 278 sf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~-l~l~a 356 (447)
T KOG4497|consen 278 SFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN-LKLHA 356 (447)
T ss_pred ccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh-hhhhh
Confidence 00000000000 0001112346778999999999999765 8899999985 33322
Q ss_pred eeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCcee
Q 010287 377 TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 456 (513)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 456 (513)
.+ ..... |....|+|....|+.+.....+++|.+.. ....-.....-.|..+.|..+|..++
T Consensus 357 vL-iQk~p---------------iraf~WdP~~prL~vctg~srLY~W~psg--~~~V~vP~~GF~i~~l~W~~~g~~i~ 418 (447)
T KOG4497|consen 357 VL-IQKHP---------------IRAFEWDPGRPRLVVCTGKSRLYFWAPSG--PRVVGVPKKGFNIQKLQWLQPGEFIV 418 (447)
T ss_pred hh-hhccc---------------eeEEEeCCCCceEEEEcCCceEEEEcCCC--ceEEecCCCCceeeeEEecCCCcEEE
Confidence 22 22222 34889999998888887778899999874 33223333346788999999999998
Q ss_pred eecCCCe
Q 010287 457 LGSLSGV 463 (513)
Q Consensus 457 ~~~~d~~ 463 (513)
..+.|..
T Consensus 419 l~~kDaf 425 (447)
T KOG4497|consen 419 LCGKDAF 425 (447)
T ss_pred EEcCCce
Confidence 8877654
No 209
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.3e-14 Score=139.63 Aligned_cols=296 Identities=14% Similarity=0.176 Sum_probs=184.2
Q ss_pred ceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCC
Q 010287 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (513)
Q Consensus 115 i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (513)
-..+.|+|-.+ .++++...-.|+|||.+.++....+.....+. ...+.+.+. ...+
T Consensus 1067 pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~------------t~Vs~l~li----------Ne~D 1122 (1387)
T KOG1517|consen 1067 PKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPD------------TRVSDLELI----------NEQD 1122 (1387)
T ss_pred CceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCC------------Cccceeeee----------cccc
Confidence 45677777554 77777767789999999887654333221110 001111111 1223
Q ss_pred CCCCcCCCCCCceeceeeccCC-c----ccccceeeEeeccccCCeEEEEeccCCCEE-EEEcCCeEEEEEcCCCcceee
Q 010287 195 NDSSFPPGGVSSLRLPVVTSQE-T----NLVAGCRRIYAHAHDYHINSISNNSDGETF-ISADDLRINLWNLEISNQSFN 268 (513)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~~~~-~----~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~d~~i~vwd~~~~~~~~~ 268 (513)
..+.++++.+|.|++|+-.... . ........-...+..+.=.-+.|.....+| ++|+-..|+|||.........
T Consensus 1123 ~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred hhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEee
Confidence 3556788999999999764332 1 111111111111111111345677654444 455788999999997665543
Q ss_pred ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 348 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 348 (513)
+ ..+....|+++.-+-..+++|++|..||.|++||.|.... +..+..+..++.. .+|..+.+
T Consensus 1203 i-------P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~-ds~v~~~R~h~~~----------~~Iv~~sl 1264 (1387)
T KOG1517|consen 1203 I-------PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP-DSLVCVYREHNDV----------EPIVHLSL 1264 (1387)
T ss_pred c-------ccCCCccceeecccccCCceEEEeecCCceEEeecccCCc-cccceeecccCCc----------ccceeEEe
Confidence 3 1234566777776554458999999999999999886543 1224444443321 23899999
Q ss_pred eecCC-EEEEEe-CCeEEEEEccCC-CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEe
Q 010287 349 ARNGR-HILSRD-YMTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 425 (513)
Q Consensus 349 sp~~~-~l~~~~-~~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 425 (513)
.++|- .|++|+ +|.|++||++.+ ......+..|....+ ..+++..+++...+|+|+. +.|+||+
T Consensus 1265 q~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs------------~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1265 QRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGS------------ALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred ecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCc------------cceeeeeccCCCeeeecCc-ceEEEEe
Confidence 88664 478876 599999999962 111122222221100 1458999999999999998 9999999
Q ss_pred cCCCCccceeec-------CCCCceeEEEEcCCCCceeeecCCCeEEEe
Q 010287 426 CSEGSAESTTLE-------ASKNPMRRQVQTPSRPSRPLGSLSGVVRRV 467 (513)
Q Consensus 426 ~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 467 (513)
+... .+..++ .....+.+++|+|-.-.+|.|+.|..|.++
T Consensus 1332 ~~G~--~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1332 LSGE--QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred cChh--hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 8743 222222 234567899999999999999999999993
No 210
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.8e-15 Score=134.06 Aligned_cols=245 Identities=14% Similarity=0.158 Sum_probs=158.6
Q ss_pred eccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcc
Q 010287 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (513)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (513)
..++.||+ +.|++++| +.+|.+|++||.|-.+.|||.-..+....
T Consensus 43 E~eL~GH~------------GCVN~LeW--n~dG~lL~SGSDD~r~ivWd~~~~Kllhs--------------------- 87 (758)
T KOG1310|consen 43 EAELTGHT------------GCVNCLEW--NADGELLASGSDDTRLIVWDPFEYKLLHS--------------------- 87 (758)
T ss_pred hhhhcccc------------ceecceee--cCCCCEEeecCCcceEEeecchhcceeee---------------------
Confidence 36788998 99999999 67999999999999999999976553332
Q ss_pred cccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc--CCCEEEEE
Q 010287 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA 250 (513)
Q Consensus 173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~ 250 (513)
.-.+|...|.++.|-| +.+++++|
T Consensus 88 ------------------------------------------------------I~TgHtaNIFsvKFvP~tnnriv~sg 113 (758)
T KOG1310|consen 88 ------------------------------------------------------ISTGHTANIFSVKFVPYTNNRIVLSG 113 (758)
T ss_pred ------------------------------------------------------eecccccceeEEeeeccCCCeEEEec
Confidence 1258999999999998 46677787
Q ss_pred -cCCeEEEEEcCCCcceeee--cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287 251 -DDLRINLWNLEISNQSFNI--VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 327 (513)
Q Consensus 251 -~d~~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 327 (513)
.|..|+++|+...+....- ..........|...|..++-.|++++.|-++++||+|+-+|+|....+........
T Consensus 114 AgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~-- 191 (758)
T KOG1310|consen 114 AGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPS-- 191 (758)
T ss_pred cCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccH--
Confidence 7999999999853211100 00001234678999999999999999999999999999999987544321110000
Q ss_pred cCCCCccccccccccEEEEEEeec-CCEEEEEe-CCeEEEEEccCCCCCeeeeeccccc----cccccccc---------
Q 010287 328 EAPGTRSFFTEIIASISDIKFARN-GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL----RPKLCDLY--------- 392 (513)
Q Consensus 328 ~~~~~~~~~~~~~~~v~~i~~sp~-~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~--------- 392 (513)
....+....-...++.++|. ..+|++|+ +-..++||.+...+....-..+... -..+.-+.
T Consensus 192 ----~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~g 267 (758)
T KOG1310|consen 192 ----ILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQG 267 (758)
T ss_pred ----HHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccc
Confidence 00001111135788999995 45666665 5889999965311111110000000 00000000
Q ss_pred -ccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc
Q 010287 393 -ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 432 (513)
Q Consensus 393 -~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 432 (513)
....+..++-+.|+|+|.-|+..-..-.|+++|+..++..
T Consensus 268 n~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 268 NLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred ccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 0011223567899999987776665668999999877444
No 211
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.2e-15 Score=134.31 Aligned_cols=305 Identities=12% Similarity=0.126 Sum_probs=207.1
Q ss_pred EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (513)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (513)
+...|.+|. +.|+.|.| ...|..|++++.|..|.+||+..+..+..
T Consensus 134 l~~kL~~H~------------GcVntV~F--N~~Gd~l~SgSDD~~vv~WdW~~~~~~l~-------------------- 179 (559)
T KOG1334|consen 134 LQKKLNKHK------------GCVNTVHF--NQRGDVLASGSDDLQVVVWDWVSGSPKLS-------------------- 179 (559)
T ss_pred hhhcccCCC------------Cccceeee--cccCceeeccCccceEEeehhhccCcccc--------------------
Confidence 444566777 99999999 55788999999999999999987653221
Q ss_pred ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc--CCCEEEE
Q 010287 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFIS 249 (513)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s 249 (513)
|..+|...|....|-| +.+.+++
T Consensus 180 -------------------------------------------------------f~SGH~~NvfQaKFiP~s~d~ti~~ 204 (559)
T KOG1334|consen 180 -------------------------------------------------------FESGHCNNVFQAKFIPFSGDRTIVT 204 (559)
T ss_pred -------------------------------------------------------cccccccchhhhhccCCCCCcCcee
Confidence 1346766677777766 3456666
Q ss_pred E-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecccc
Q 010287 250 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 328 (513)
Q Consensus 250 ~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 328 (513)
+ .||.+++=.+...+..... ..+..|.++|..++.-|+.+..|.+++.|+.+.-+|++.+....... ...
T Consensus 205 ~s~dgqvr~s~i~~t~~~e~t-----~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~----cr~ 275 (559)
T KOG1334|consen 205 SSRDGQVRVSEILETGYVENT-----KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV----CRE 275 (559)
T ss_pred ccccCceeeeeeccccceecc-----eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee----eec
Confidence 5 7999998877644433322 25677999999999999999999999999999999999876532211 111
Q ss_pred CCCCccccccccccEEEEEEeecCC-EEEEEe-CCeEEEEEccCCCC-----CeeeeecccccccccccccccCCcccee
Q 010287 329 APGTRSFFTEIIASISDIKFARNGR-HILSRD-YMTLKLWDINMDSG-----PVATFQVHEHLRPKLCDLYENDSIFDKF 401 (513)
Q Consensus 329 ~~~~~~~~~~~~~~v~~i~~sp~~~-~l~~~~-~~~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (513)
.... ..-....++..|... .+++|. +..+++||.+.-.+ ++..+..+.-. . +....|+
T Consensus 276 ~~~~------~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~--------~-d~~v~IT 340 (559)
T KOG1334|consen 276 ADEK------ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLV--------E-DDPVNIT 340 (559)
T ss_pred cCCc------cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcccc--------c-cCcccce
Confidence 1000 012578889999665 555554 58899999875111 12222211110 1 2333478
Q ss_pred eEEEeCCCCEEEEEeCCCcEEEEecCCCC-----------c-cceeecCCCCc--eeEE-EEcCCCCceeeecCCCeEEE
Q 010287 402 ECCLSGDGGRVATGSYSNLFRVFGCSEGS-----------A-ESTTLEASKNP--MRRQ-VQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 402 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-----------~-~~~~~~~~~~~--v~~~-~~~~~~~~l~~~~~d~~i~~ 466 (513)
+++|+.++.-|.++-.|-.|++++..-+. . ...++++|.+. |..+ .|-|...|+++|+..|.|.|
T Consensus 341 gl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFi 420 (559)
T KOG1334|consen 341 GLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFI 420 (559)
T ss_pred eEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEE
Confidence 99999777666666667789999543221 1 12347788764 4344 45788999999999999999
Q ss_pred ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 467 VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
|+....++.....+-..-|+||.=||--..||+++ +..|+||.
T Consensus 421 ---W~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 421 ---WDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred ---EecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeec
Confidence 54433233222222234799999999999999776 88899996
No 212
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.67 E-value=2.4e-14 Score=119.76 Aligned_cols=238 Identities=12% Similarity=0.112 Sum_probs=166.0
Q ss_pred cCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287 232 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 310 (513)
Q Consensus 232 ~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd 310 (513)
..+|+|.+|++|...++.+ ....|.||.....+. .+. .+.+..|...|+.+.|+|.. +.|++|+.|..-.+|.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-w~~----~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-WEP----AHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWT 83 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCC-cee----ceehhhhCcceeEEeecCCC-CceeEccCCCCccccc
Confidence 3679999999999999999 788999999875442 221 14678899999999999998 8999999999999999
Q ss_pred cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCe--eeee-ccccccc
Q 010287 311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPV--ATFQ-VHEHLRP 386 (513)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~--~~~~-~~~~~~~ 386 (513)
...+..- +..- .+..+....+++.|+|.+..+++|+. ..|.||-++.+..-- +.++ ....
T Consensus 84 ~~~~~~W-kptl------------vLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirS--- 147 (361)
T KOG1523|consen 84 QPSGGTW-KPTL------------VLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRS--- 147 (361)
T ss_pred cCCCCee-ccce------------eEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcccc---
Confidence 8544321 1111 13345578999999999999999887 888998887422210 0110 1111
Q ss_pred ccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC-----------------CccceeecCCCCceeEEEEc
Q 010287 387 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG-----------------SAESTTLEASKNPMRRQVQT 449 (513)
Q Consensus 387 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-----------------~~~~~~~~~~~~~v~~~~~~ 449 (513)
.|++++|+|++-+|++|+.|+..+||..--. +++...+....+.+..+.|+
T Consensus 148 ------------tv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs 215 (361)
T KOG1523|consen 148 ------------TVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS 215 (361)
T ss_pred ------------ceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC
Confidence 2569999999999999999999999864211 01112222456789999999
Q ss_pred CCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcC
Q 010287 450 PSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS 505 (513)
Q Consensus 450 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~ 505 (513)
|+|..|+-.+.|..+.+.....+.. ........ .-+.+++.|-.+...++.|-+
T Consensus 216 ~sG~~lawv~Hds~v~~~da~~p~~-~v~~~~~~-~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 216 PSGNRLAWVGHDSTVSFVDAAGPSE-RVQSVATA-QLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred CCCCEeeEecCCCceEEeecCCCch-hccchhhc-cCCceeeEeecCCceeecCCC
Confidence 9999999999999999933332220 00001111 256677777766655444433
No 213
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=9.7e-16 Score=134.17 Aligned_cols=266 Identities=14% Similarity=0.151 Sum_probs=195.2
Q ss_pred ceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCC
Q 010287 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (513)
Q Consensus 115 i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (513)
-+.+.| +.+|.+++.++.-|.|-.+|+.++++...+.+.
T Consensus 132 PY~~~y--trnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~--------------------------------------- 170 (545)
T KOG1272|consen 132 PYHLDY--TRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM--------------------------------------- 170 (545)
T ss_pred Ceeeee--cCCccEEEecCCccceeeeecccceeeeeeehh---------------------------------------
Confidence 456677 678999999999999999999998765432211
Q ss_pred CCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCc
Q 010287 195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKP 274 (513)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~ 274 (513)
..|.++.|-.+.++|+++....++|||-. +..+.
T Consensus 171 --------------------------------------Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElH------- 204 (545)
T KOG1272|consen 171 --------------------------------------ETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELH------- 204 (545)
T ss_pred --------------------------------------hhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEe-------
Confidence 23778889888999999999999999976 33332
Q ss_pred cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCE
Q 010287 275 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 354 (513)
Q Consensus 275 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~ 354 (513)
.+.. ...|..+.|-|.. .+|++++..|.++.-|+.+|+++.. +.. -.+.+..++-+|-+..
T Consensus 205 -Clk~-~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~----~~t------------~~G~~~vm~qNP~NaV 265 (545)
T KOG1272|consen 205 -CLKR-HIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVAS----IRT------------GAGRTDVMKQNPYNAV 265 (545)
T ss_pred -ehhh-cCchhhhcccchh-heeeecccCCceEEEeechhhhhHH----HHc------------cCCccchhhcCCccce
Confidence 2233 3558899999998 8999999999999999999987432 222 2256777888898888
Q ss_pred EEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccc
Q 010287 355 ILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 433 (513)
Q Consensus 355 l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 433 (513)
+-.|.. |+|.+|...+ .+++..+..|.+.++ ++++.++|+|++|.+.|..++|||++...++
T Consensus 266 ih~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~---------------siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql- 328 (545)
T KOG1272|consen 266 IHLGHSNGTVSLWSPNS-KEPLVKILCHRGPVS---------------SIAVDRGGRYMATTGLDRKVKIWDLRNFYQL- 328 (545)
T ss_pred EEEcCCCceEEecCCCC-cchHHHHHhcCCCcc---------------eEEECCCCcEEeecccccceeEeeecccccc-
Confidence 888876 9999999987 788888888888744 9999999999999999999999999977433
Q ss_pred eeecCCCCceeEEEEcCCCCceeeecCCCeEEE----ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcE
Q 010287 434 TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR----VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSL 508 (513)
Q Consensus 434 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~ 508 (513)
.++.. .-+...+.+|..| ++..+..-.+.| ..+.. ..+.........+.|..+.|.|-...|-+|...++
T Consensus 329 ~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~--~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 329 HTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSG--HGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred ceeec-CCCcccccccccc--ceeeecCCeeeeehhhhcCCC--CCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence 33322 3445566666543 334445556666 11110 00111112223568999999999999998876665
No 214
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=2.3e-13 Score=109.47 Aligned_cols=246 Identities=12% Similarity=0.133 Sum_probs=155.5
Q ss_pred CceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCc---ccccceeeEeeccccCCeEEEEeccCCCEEEEEcC
Q 010287 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQET---NLVAGCRRIYAHAHDYHINSISNNSDGETFISADD 252 (513)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d 252 (513)
.-+++|.++++ +.++..|.|.+..+..... ....+..-....+|.+++..++|. ...|++|.|
T Consensus 15 ~qa~sp~~~~l------------~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd 80 (325)
T KOG0649|consen 15 AQAISPSKQYL------------FAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD 80 (325)
T ss_pred HHhhCCcceEE------------EEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC
Confidence 34677778776 8889999999988855432 222222222237999999999998 457888888
Q ss_pred CeEEEEEcCCCcc---eeeecccCccccc--cccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287 253 LRINLWNLEISNQ---SFNIVDVKPANME--DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 327 (513)
Q Consensus 253 ~~i~vwd~~~~~~---~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 327 (513)
|.|+-|..+.... ...+++.++.... ..--.|+++-..|.. +-++.++.|+.+.-||+++|+. .+.
T Consensus 81 G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i----~r~---- 151 (325)
T KOG0649|consen 81 GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRI----QRE---- 151 (325)
T ss_pred ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEE----EEE----
Confidence 9999998764332 1222222221000 012357889999988 6666677999999999999986 333
Q ss_pred cCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEe
Q 010287 328 EAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 406 (513)
Q Consensus 328 ~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 406 (513)
+.+|...+.++.--.....+++|+ ||++++||.++ ++.++.+........... +. +-+-.+..
T Consensus 152 --------~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~~lRp---~~----g~wigala 215 (325)
T KOG0649|consen 152 --------YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPNLLRP---DW----GKWIGALA 215 (325)
T ss_pred --------EcCCcceeeeeeecccCcceeecCCCccEEEEeccc-cceeEEeccccChhhcCc---cc----CceeEEEe
Confidence 556678899998855455566665 59999999997 887777755443211000 00 01124555
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEE
Q 010287 407 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVR 465 (513)
Q Consensus 407 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 465 (513)
-+..+|++|+. ..+.+|++++.... .++ .-..++..+.|-.+ .+++++..+.|.
T Consensus 216 ~~edWlvCGgG-p~lslwhLrsse~t-~vf-pipa~v~~v~F~~d--~vl~~G~g~~v~ 269 (325)
T KOG0649|consen 216 VNEDWLVCGGG-PKLSLWHLRSSEST-CVF-PIPARVHLVDFVDD--CVLIGGEGNHVQ 269 (325)
T ss_pred ccCceEEecCC-CceeEEeccCCCce-EEE-ecccceeEeeeecc--eEEEecccccee
Confidence 56678887764 57999999976332 222 22344555555433 455555444433
No 215
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=9e-14 Score=118.24 Aligned_cols=242 Identities=12% Similarity=0.138 Sum_probs=152.0
Q ss_pred CCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287 233 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 311 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~ 311 (513)
..+..++|++.-..++++ .|-.|++|+-.. . ....+ + ...+..|+|++|-|.+...|+.|+..| |.+|..
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t-~pt~L-----k-s~sQrnvtclawRPlsaselavgCr~g-IciW~~ 169 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-T-CPTKL-----K-SVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSD 169 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-C-CCcee-----c-chhhcceeEEEeccCCcceeeeeecce-eEEEEc
Confidence 347789999976677777 799999999775 2 21111 0 123567999999999878888877655 788976
Q ss_pred CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecccccccccc
Q 010287 312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLC 389 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
.......+.++....+. .......+| .+|++++|.+||..+++++- ..|.|||..+ +..+.......+.
T Consensus 170 s~tln~~r~~~~~s~~~--~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-g~~~pL~~~glgg----- 240 (445)
T KOG2139|consen 170 SRTLNANRNIRMMSTHH--LQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-GQKIPLIPKGLGG----- 240 (445)
T ss_pred Ccccccccccccccccc--hhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-CCcccccccCCCc-----
Confidence 54322222222111110 011112334 68999999999999999763 8999999987 4433322111111
Q ss_pred cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC-CCCccceeecCCCCceeEEEEcCCCCceeeecC-CCeEEE-
Q 010287 390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS-EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL-SGVVRR- 466 (513)
Q Consensus 390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~- 466 (513)
+.-+.|||||.+|.+++-|+..++|+.. +..++. .....+.|...+|+|.|++|+.... .-.+.-
T Consensus 241 ----------~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er--w~lgsgrvqtacWspcGsfLLf~~sgsp~lysl 308 (445)
T KOG2139|consen 241 ----------FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER--WILGSGRVQTACWSPCGSFLLFACSGSPRLYSL 308 (445)
T ss_pred ----------eeeEEEcCCCCEEEEecccceeeeehhcccceecc--eeccCCceeeeeecCCCCEEEEEEcCCceEEEE
Confidence 3378999999999999999999999544 332222 2223348889999999998765432 222222
Q ss_pred -ecCCCCCc--------cccCCcc---------ccccCCeeEEEEeCCCCEEEEEc
Q 010287 467 -VKGADNSA--------LDANGNA---------FDFSMKLLHLAWHPSENSIACAA 504 (513)
Q Consensus 467 -~~~~~~~~--------~~~~~~~---------~~~~~~i~~~~~sp~~~~la~~~ 504 (513)
..+..... ..+..+. .-..+.+.+++|.|.|.+||+.-
T Consensus 309 ~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 309 TFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred eecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 11111110 0011110 11256889999999999999764
No 216
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=1.8e-13 Score=116.89 Aligned_cols=232 Identities=15% Similarity=0.200 Sum_probs=154.9
Q ss_pred CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC--CcEEEEE
Q 010287 233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSIRLID 310 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--g~i~vwd 310 (513)
..+..+.|+.+...|..|...--++|..+...+... .......|..+-|+.. ++|..+.+ +.+++++
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~--------~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~ 74 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFS--------KDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVH 74 (391)
T ss_pred cceeeeeeccceeEEEccCCCceeEEecCchHHhhc--------ccCCCeEEEEeecccc---eeEEEecCCCceEEEEE
Confidence 346677799998888888544467887775444321 1223445666667653 55554443 4588888
Q ss_pred cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeeccccccccccc
Q 010287 311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCD 390 (513)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 390 (513)
++.+..+... .| ..+|.+|.++. +.|+++-...|+|||++. .+++.++.........
T Consensus 75 ~Kk~~~ICe~--~f---------------pt~IL~VrmNr--~RLvV~Lee~IyIydI~~-MklLhTI~t~~~n~~g--- 131 (391)
T KOG2110|consen 75 FKKKTTICEI--FF---------------PTSILAVRMNR--KRLVVCLEESIYIYDIKD-MKLLHTIETTPPNPKG--- 131 (391)
T ss_pred cccCceEEEE--ec---------------CCceEEEEEcc--ceEEEEEcccEEEEeccc-ceeehhhhccCCCccc---
Confidence 8765543221 11 14688888863 455555555699999996 8888887655322221
Q ss_pred ccccCCccceeeEEEeCCCCEEEEE--eCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE--
Q 010287 391 LYENDSIFDKFECCLSGDGGRVATG--SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR-- 466 (513)
Q Consensus 391 ~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~-- 466 (513)
+.++.+++.+.||+-- ...|.|.+||..+- +...++..|.+++.+++|+++|.+||++|..|+|..
T Consensus 132 ---------l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl-~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf 201 (391)
T KOG2110|consen 132 ---------LCALSPNNANCYLAYPGSTTSGDVVLFDTINL-QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVF 201 (391)
T ss_pred ---------eEeeccCCCCceEEecCCCCCceEEEEEcccc-eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEE
Confidence 2255556666788843 35789999999876 445788899999999999999999999999998754
Q ss_pred -e-cCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 467 -V-KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 467 -~-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
+ .+.+.. ++.... .-..|.+++||||+++|++.+ .+++-||.
T Consensus 202 ~v~~G~kl~--eFRRG~--~~~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 202 SVPEGQKLY--EFRRGT--YPVSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred EcCCccEee--eeeCCc--eeeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 2 222222 111111 145799999999999999666 77777774
No 217
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.62 E-value=3.2e-13 Score=132.25 Aligned_cols=269 Identities=14% Similarity=0.181 Sum_probs=168.3
Q ss_pred CCCcceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCC
Q 010287 86 RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNG 165 (513)
Q Consensus 86 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 165 (513)
|+|.......+..|. ..|..++.++ +.+.+|++||.||+|++|+...-.....
T Consensus 1034 W~p~G~lVAhL~Ehs------------~~v~k~a~s~-~~~s~FvsgS~DGtVKvW~~~k~~~~~~-------------- 1086 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHS------------SAVIKLAVSS-EHTSLFVSGSDDGTVKVWNLRKLEGEGG-------------- 1086 (1431)
T ss_pred CCccceEeehhhhcc------------ccccceeecC-CCCceEEEecCCceEEEeeehhhhcCcc--------------
Confidence 466666777777777 7888888864 3447999999999999999875321100
Q ss_pred CcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCC
Q 010287 166 PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE 245 (513)
Q Consensus 166 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 245 (513)
. .+...++ ..-...+.++...+.+.
T Consensus 1087 -------------------------------------s-----------------~rS~lty-s~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1087 -------------------------------------S-----------------ARSELTY-SPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred -------------------------------------e-----------------eeeeEEE-eccCCceEEEEeccCCC
Confidence 0 0001111 11234578888889999
Q ss_pred EEEEE-cCCeEEEEEcCCCcceee-ecccCccccccccCCeEEEEEeCCCCe-EEEEEeCCCcEEEEEcCCcccccccce
Q 010287 246 TFISA-DDLRINLWNLEISNQSFN-IVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQSALCDTHSK 322 (513)
Q Consensus 246 ~l~s~-~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~ 322 (513)
.+|.+ .||.|.+.+++....... ....+..........+..-+|...... .++.+..-+.|..||+++....+.
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~--- 1188 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR--- 1188 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh---
Confidence 99998 799999999875211110 000011122222233333344433324 788899999999999988654322
Q ss_pred eeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCcccee
Q 010287 323 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 401 (513)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (513)
++. ....+.|++++.+|.+.+++.|+. |.+.+||++. +.++......... ++.
T Consensus 1189 -lk~----------~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~--------------~i~ 1242 (1431)
T KOG1240|consen 1189 -LKN----------QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF-RVPILSWEHPARA--------------PIR 1242 (1431)
T ss_pred -hhc----------CccccceeEEEecCCceEEEEecCCceEEEEEeec-CceeecccCcccC--------------Ccc
Confidence 111 112278999999999999999987 9999999996 7777666433321 122
Q ss_pred eEEEe---CCCCEEEEEe--CCCcEEEEecCCCCccceeecCC-------------------CCceeEEEEcCCCCceee
Q 010287 402 ECCLS---GDGGRVATGS--YSNLFRVFGCSEGSAESTTLEAS-------------------KNPMRRQVQTPSRPSRPL 457 (513)
Q Consensus 402 ~~~~s---~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~l~~ 457 (513)
.++.. |...+.++++ ..+.|.+|++.++... .++-.. .-+.....+...+.++.+
T Consensus 1243 ~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~-~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~lt 1321 (1431)
T KOG1240|consen 1243 HVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ-TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLT 1321 (1431)
T ss_pred eEEeeccCCCCceEEEecccCCCceeeeecccCcce-EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeee
Confidence 34443 3344555444 5788999999988332 232211 111223344445678899
Q ss_pred ecCCCeEEE
Q 010287 458 GSLSGVVRR 466 (513)
Q Consensus 458 ~~~d~~i~~ 466 (513)
|+.|..|+.
T Consensus 1322 ggsd~kIR~ 1330 (1431)
T KOG1240|consen 1322 GGSDMKIRK 1330 (1431)
T ss_pred cCCccceee
Confidence 999999998
No 218
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=1.2e-13 Score=118.68 Aligned_cols=233 Identities=16% Similarity=0.192 Sum_probs=162.5
Q ss_pred CCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC--CcEEEE
Q 010287 233 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSIRLI 309 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--g~i~vw 309 (513)
..|..++.. ...|++| ++|.+.+|....+..--. ++..+.. ...+..+.-++..+.++++|+.. ..+++|
T Consensus 106 ~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss----~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiw 178 (412)
T KOG3881|consen 106 KSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSS----KLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIW 178 (412)
T ss_pred ccccchhhc--CCEEEEEecCCcEEEEeccCCccccc----cceeeec-CCceeeeccCCCCCceEecCchhcccceeee
Confidence 334444433 3356667 899999999874431100 0012222 34567777788877888889999 899999
Q ss_pred EcCCcccccccceeeccccCCCCccccccccccEEEEEEeec--CCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccc
Q 010287 310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRP 386 (513)
Q Consensus 310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~--~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~ 386 (513)
|+..... .|...+.+.... --.-.-+++++.|-+. ...|++++. +.|++||.+...+|+..+...+..
T Consensus 179 dle~~~q------iw~aKNvpnD~L-~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~-- 249 (412)
T KOG3881|consen 179 DLEQSKQ------IWSAKNVPNDRL-GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP-- 249 (412)
T ss_pred eccccee------eeeccCCCCccc-cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCc--
Confidence 9987643 233322221100 0001136788899886 788999887 999999999878888888776655
Q ss_pred ccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 387 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 387 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
++++...|+++++++|..-+.+..||++.++.....+++-.+.++.+..+|.++++|+++-|+.+||
T Consensus 250 -------------is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRI 316 (412)
T KOG3881|consen 250 -------------ISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRI 316 (412)
T ss_pred -------------ceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEE
Confidence 4589999999999999999999999999885555668999999999999999999999999999999
Q ss_pred ecCCCCCccccCCccccccCCeeEEEEeCCCC
Q 010287 467 VKGADNSALDANGNAFDFSMKLLHLAWHPSEN 498 (513)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~ 498 (513)
++.....+.. ..-..+.++.+-+.++-+
T Consensus 317 ---hD~ktrkll~-kvYvKs~lt~il~~~~~n 344 (412)
T KOG3881|consen 317 ---HDIKTRKLLH-KVYVKSRLTFILLRDDVN 344 (412)
T ss_pred ---eecccchhhh-hhhhhccccEEEecCCcc
Confidence 2221101111 111245667777766543
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.3e-13 Score=128.08 Aligned_cols=215 Identities=12% Similarity=0.136 Sum_probs=132.8
Q ss_pred ccCCeEEEEeccCCCEEEEE----cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEE-EEeCCC-
Q 010287 231 HDYHINSISNNSDGETFISA----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKG- 304 (513)
Q Consensus 231 h~~~v~~~~~~~~~~~l~s~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg- 304 (513)
+...+.+.+|+|||+.|+.. .+..|.+|++.+++.. . +......+..+.|+||+ +.|+ +.+.+|
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~--------l~~~~~~~~~~~~SPDG-~~La~~~~~~g~ 266 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-Q--------VASFPRHNGAPAFSPDG-SKLAFALSKTGS 266 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-E--------ccCCCCCcCCeEECCCC-CEEEEEEcCCCC
Confidence 33458889999999988864 2457999999865422 1 11122334568999999 5555 445555
Q ss_pred -cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecc
Q 010287 305 -SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVH 381 (513)
Q Consensus 305 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~ 381 (513)
.|.+||+.++.. ..+. .+...+....|+|||+.|+..++ +...||.+...+.....+...
T Consensus 267 ~~I~~~d~~tg~~-----~~lt------------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~ 329 (429)
T PRK03629 267 LNLYVMDLASGQI-----RQVT------------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWE 329 (429)
T ss_pred cEEEEEECCCCCE-----EEcc------------CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecC
Confidence 588899887653 1111 11134678899999998887554 555555443223333333322
Q ss_pred cccccccccccccCCccceeeEEEeCCCCEEEEEeCC---CcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeee
Q 010287 382 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 458 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 458 (513)
... .....|+|||++|+..+.+ ..|++||+.++... .+... .......|+|||+.|+..
T Consensus 330 ~~~---------------~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~--~Lt~~-~~~~~p~~SpDG~~i~~~ 391 (429)
T PRK03629 330 GSQ---------------NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VLTDT-FLDETPSIAPNGTMVIYS 391 (429)
T ss_pred CCC---------------ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE--EeCCC-CCCCCceECCCCCEEEEE
Confidence 211 1267899999998876543 35888999877432 22221 123467899999999998
Q ss_pred cCCCeE---EE--ecCCCCCccccCCccccccCCeeEEEEeCC
Q 010287 459 SLSGVV---RR--VKGADNSALDANGNAFDFSMKLLHLAWHPS 496 (513)
Q Consensus 459 ~~d~~i---~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 496 (513)
+.++.. .+ .++.... ....|.+.+...+|+|-
T Consensus 392 s~~~~~~~l~~~~~~G~~~~------~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 392 SSQGMGSVLNLVSTDGRFKA------RLPATDGQVKFPAWSPY 428 (429)
T ss_pred EcCCCceEEEEEECCCCCeE------ECccCCCCcCCcccCCC
Confidence 877653 33 2222221 12236778899999984
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=9.2e-13 Score=125.02 Aligned_cols=169 Identities=15% Similarity=0.175 Sum_probs=106.4
Q ss_pred EEEEeccCCCEEEEE--cCC--eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC-CCcEEEE-
Q 010287 236 NSISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLI- 309 (513)
Q Consensus 236 ~~~~~~~~~~~l~s~--~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~vw- 309 (513)
..++|+|||+.|+.. .++ .|++||+.++... .+..+...+....|+|++ +.|+..+. ++...+|
T Consensus 246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~---------~lt~~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~ 315 (429)
T PRK03629 246 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR---------QVTDGRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYK 315 (429)
T ss_pred CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE---------EccCCCCCcCceEECCCC-CEEEEEeCCCCCceEEE
Confidence 357899999988864 243 5889999865422 223334457789999999 66665554 4555555
Q ss_pred -EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C---CeEEEEEccCCCCCeeeeeccccc
Q 010287 310 -DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEHL 384 (513)
Q Consensus 310 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~---~~v~iwd~~~~~~~~~~~~~~~~~ 384 (513)
|+.++.. ..+.. .........|+|||++|+... + ..|.+||+.. +. ...+.... .
T Consensus 316 ~d~~~g~~-----~~lt~------------~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-g~-~~~Lt~~~-~ 375 (429)
T PRK03629 316 VNINGGAP-----QRITW------------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GG-VQVLTDTF-L 375 (429)
T ss_pred EECCCCCe-----EEeec------------CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC-CC-eEEeCCCC-C
Confidence 5544432 11111 112355688999999988743 2 4688889875 33 33332111 0
Q ss_pred ccccccccccCCccceeeEEEeCCCCEEEEEeCCCc---EEEEecCCCCccceeecCCCCceeEEEEcCC
Q 010287 385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL---FRVFGCSEGSAESTTLEASKNPMRRQVQTPS 451 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 451 (513)
.....|+|||++|+.++.++. ++++++.. .....+..|...+...+|+|-
T Consensus 376 ---------------~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G--~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 376 ---------------DETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG--RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred ---------------CCCceECCCCCEEEEEEcCCCceEEEEEECCC--CCeEECccCCCCcCCcccCCC
Confidence 115789999999998887664 67777753 333556667777777778763
No 221
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.57 E-value=2.9e-14 Score=125.05 Aligned_cols=298 Identities=14% Similarity=0.215 Sum_probs=203.9
Q ss_pred CCcccccccccccccceeccccccccc----cc------cccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccC
Q 010287 6 GSSEAAAQPLEWKFSQVFGERTAGEEV----QE------VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRR 75 (513)
Q Consensus 6 ~~~~~~~~~~~w~~~~~~~~~~~~~~~----~h------~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~ 75 (513)
|..++......|++.|- +-....++ .| .-.-..+.++.+|++|+.|+..|.|..+|+.+....
T Consensus 92 G~le~e~~EkT~~v~Q~--~Ia~~Vdi~sa~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~----- 164 (545)
T KOG1272|consen 92 GYLEAEGLEKTYKVRQD--DIAENVDIASATKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH----- 164 (545)
T ss_pred CcccccCCcceeeeEHh--hhhhhccHHhHHhhccccccccCCeeeeecCCccEEEecCCccceeeeecccceee-----
Confidence 45566677788888763 11111111 11 234467888999999999999999999999887752
Q ss_pred ccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccc
Q 010287 76 DLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155 (513)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~ 155 (513)
.++. ....|.++.|.. +..+ ++....+.+.|||-...++-++.+
T Consensus 165 ------------------~Ei~-------------v~Etv~Dv~~LH--neq~-~AVAQK~y~yvYD~~GtElHClk~-- 208 (545)
T KOG1272|consen 165 ------------------FEIN-------------VMETVRDVTFLH--NEQF-FAVAQKKYVYVYDNNGTELHCLKR-- 208 (545)
T ss_pred ------------------eeee-------------hhhhhhhhhhhc--chHH-HHhhhhceEEEecCCCcEEeehhh--
Confidence 2222 226799999964 4334 445567789999976655433211
Q ss_pred cCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCe
Q 010287 156 VHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHI 235 (513)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v 235 (513)
| ..|
T Consensus 209 ---------------------------------------------------------------------------~-~~v 212 (545)
T KOG1272|consen 209 ---------------------------------------------------------------------------H-IRV 212 (545)
T ss_pred ---------------------------------------------------------------------------c-Cch
Confidence 1 347
Q ss_pred EEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCc
Q 010287 236 NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 314 (513)
Q Consensus 236 ~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 314 (513)
..+.|-|..=+|+++ ..|-++.-|+.+++... .+....+.+..++-+|-+ -.+-+|...|+|.+|.....
T Consensus 213 ~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa--------~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 213 ARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVA--------SIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred hhhcccchhheeeecccCCceEEEeechhhhhH--------HHHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCc
Confidence 788899987777777 69999999999887654 334456778889999987 88999999999999998776
Q ss_pred ccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccc
Q 010287 315 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE 393 (513)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (513)
+...+ +..|.++|.+|++.++|+|+++.+ |..++|||+++ ...+.++.....
T Consensus 284 ePLvK----------------iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~-~~ql~t~~tp~~---------- 336 (545)
T KOG1272|consen 284 EPLVK----------------ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN-FYQLHTYRTPHP---------- 336 (545)
T ss_pred chHHH----------------HHhcCCCcceEEECCCCcEEeecccccceeEeeecc-ccccceeecCCC----------
Confidence 55322 345678999999999999999855 69999999997 444444433111
Q ss_pred cCCccceeeEEEeCCCCEEEEEeCCCcEEEEec-CCCC-ccceeecC--CCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 394 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC-SEGS-AESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 394 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~-~~~~-~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
...+++|..| +++.+....+.+|.- -.+. .....+-. -..+|..+.|.|-...|-.|-..|.-.+
T Consensus 337 ------a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 337 ------ASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred ------cccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 1267788665 334455567999943 2211 11111112 2358899999998888877766666555
No 222
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.2e-11 Score=111.71 Aligned_cols=312 Identities=9% Similarity=0.091 Sum_probs=180.5
Q ss_pred cccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccc
Q 010287 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (513)
Q Consensus 35 ~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (513)
..+++..++|++|+++|.+.. ..++|++...... ....+. ..
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~----------------------~lt~~~---------------~~ 75 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSDN-QVVKVFEIATLKV----------------------VLCVEL---------------KK 75 (566)
T ss_pred CCcceeEEEcCCCcEEEEEcC-CeEEEEEccCCcE----------------------EEEecc---------------ce
Confidence 344788899999999998764 4799999766532 111111 24
Q ss_pred ceeEEEeecCCCceEEEe-----ecC-----CeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCC
Q 010287 115 INKIRWCQSANSALYLLS-----TND-----KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (513)
Q Consensus 115 i~~i~~~~~~~~~~l~s~-----s~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 184 (513)
++++.|+| .+.+|.+- ..+ ..+++|+++++............ .+ .+.|++|..
T Consensus 76 ~~~L~fSP--~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~--------------~W-~~qfs~dEs 138 (566)
T KOG2315|consen 76 TYDLLFSP--KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQN--------------GW-VPQFSIDES 138 (566)
T ss_pred eeeeeecc--cccccccccccccccCCCCCCCceeeeeeccceehhheehhhhc--------------Cc-ccccccchh
Confidence 78888865 55566551 122 34779999885433222221111 01 234444433
Q ss_pred ccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC--CEEEE---E---cCCeEE
Q 010287 185 CGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFIS---A---DDLRIN 256 (513)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s---~---~d~~i~ 256 (513)
. +.--..+.+.+++...-... .-.-|...|..+.++|.+ ..+++ + .-..++
T Consensus 139 l-------------~arlv~nev~f~~~~~f~~~--------~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vr 197 (566)
T KOG2315|consen 139 L-------------AARLVSNEVQFYDLGSFKTI--------QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVR 197 (566)
T ss_pred h-------------hhhhhcceEEEEecCCccce--------eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEE
Confidence 2 22234556777776552221 123456778889998863 34443 1 256799
Q ss_pred EEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC--CC---------cEEEEEcCCcccccccceeec
Q 010287 257 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--KG---------SIRLIDMRQSALCDTHSKLFE 325 (513)
Q Consensus 257 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg---------~i~vwd~~~~~~~~~~~~~~~ 325 (513)
+|...... ....+.. ..+ ....=..+.|++-+..+|+.++. |. .+++.++. +.. ..+.
T Consensus 198 i~~~~~~~-~~~~~a~--ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s-----~~V~ 266 (566)
T KOG2315|consen 198 IYKYPEEG-QHQPVAN--KSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GES-----VSVP 266 (566)
T ss_pred Eecccccc-ccchhhh--ccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-Cce-----EEEe
Confidence 99876222 1111100 011 12223467788877555554443 32 45555554 211 1111
Q ss_pred cccCCCCccccccccccEEEEEEeecCCEEEEEe--C-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceee
Q 010287 326 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 402 (513)
Q Consensus 326 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (513)
.. -.++|.++.|+|+++.+++.. . ..+.|||++ +.++..+.... ++ .
T Consensus 267 L~-----------k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~egp--RN---------------~ 316 (566)
T KOG2315|consen 267 LL-----------KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDFPEGP--RN---------------T 316 (566)
T ss_pred cC-----------CCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeCCCCC--cc---------------c
Confidence 11 127899999999998877743 3 899999998 77776664322 22 7
Q ss_pred EEEeCCCCEEEEEeC---CCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 403 CCLSGDGGRVATGSY---SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 403 ~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
+-|+|.|++|+.++- .|.|-|||..+. +.+..++... -.-+.|+|||.+++++...=.+|+
T Consensus 317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~-K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrv 380 (566)
T KOG2315|consen 317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNR-KLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRV 380 (566)
T ss_pred eEECCCCCEEEEeecCCCCCceEEEeccch-hhccccccCC--ceEEEEcCCCcEEEEEeccccEEe
Confidence 889999999987764 588999999985 4434443322 234567777777777654444444
No 223
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=4.1e-11 Score=100.69 Aligned_cols=161 Identities=11% Similarity=0.203 Sum_probs=111.4
Q ss_pred CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEE-EeCCCcEEEEEc
Q 010287 233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKGSIRLIDM 311 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~i~vwd~ 311 (513)
.+|.++.+.++ .|++.-++.|+||.+...-+....++.. . ......+++-+.+. .+||. |-.-|.|+|-|+
T Consensus 95 ~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~----~-NPkGlC~~~~~~~k-~~LafPg~k~GqvQi~dL 166 (346)
T KOG2111|consen 95 SEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETR----S-NPKGLCSLCPTSNK-SLLAFPGFKTGQVQIVDL 166 (346)
T ss_pred cceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecc----c-CCCceEeecCCCCc-eEEEcCCCccceEEEEEh
Confidence 55888888765 6777778999999987443333322211 1 11123333322232 34443 334689999998
Q ss_pred CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-C-eEEEEEccCCCCCeeeeecccccccccc
Q 010287 312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M-TLKLWDINMDSGPVATFQVHEHLRPKLC 389 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
...... +..++..|.+.|.|++++-+|..+|+++. | -|+|||..+ +..+.+++......
T Consensus 167 ~~~~~~--------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG~d~A---- 227 (346)
T KOG2111|consen 167 ASTKPN--------------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRGVDRA---- 227 (346)
T ss_pred hhcCcC--------------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecCCchh----
Confidence 764431 12346778899999999999999999886 4 579999997 88888775433221
Q ss_pred cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
.+.+++|||+..+|+++|+.|+++||.++..
T Consensus 228 ---------~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 228 ---------DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred ---------eEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 2559999999999999999999999998754
No 224
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=1.4e-12 Score=117.75 Aligned_cols=198 Identities=13% Similarity=0.174 Sum_probs=134.4
Q ss_pred EEEecc-CCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcc
Q 010287 237 SISNNS-DGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 315 (513)
Q Consensus 237 ~~~~~~-~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 315 (513)
.++++. ...+++.|....|+-++++.+.-+- .+......++++..++.. .+|++|+.+|.|..||.+...
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~--------P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLN--------PFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEcccccccc--------ccccccccceeeeecCcc-ceEEecccCceEEEecchhhh
Confidence 344443 4556666677788889998665432 344456889999999988 899999999999999999876
Q ss_pred cccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccccccccccc
Q 010287 316 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEN 394 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (513)
.+.. ++....-.. .........|+++.|+.+|-.+++|+. |.+.|||++. .+++..- -|....
T Consensus 209 rv~~----l~~~~~v~s-~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa-~~pl~~k-dh~~e~--------- 272 (703)
T KOG2321|consen 209 RVGT----LDAASSVNS-HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRA-SKPLLVK-DHGYEL--------- 272 (703)
T ss_pred hhee----eecccccCC-CccccccCcceEEEecCCceeEEeeccCCcEEEEEccc-CCceeec-ccCCcc---------
Confidence 6432 222111000 001112246999999999999999986 9999999997 5555432 333321
Q ss_pred CCccceeeEEEeCC--CCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 395 DSIFDKFECCLSGD--GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 395 ~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
+|..+.|.+. ++.|++. +...++|||-.+++. ...++. ...++.+++-|++..+.++..+..+..
T Consensus 273 ----pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~-~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 273 ----PIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKP-MASIEP-TSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred ----ceeeecccccCCCceEEec-chHHhhhcccccCCc-eeeccc-cCCcCceeeecCCceEEEecCCCccee
Confidence 1447788665 3455544 456899999998843 344443 334889999999999999887766554
No 225
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.55 E-value=2.1e-11 Score=112.14 Aligned_cols=292 Identities=12% Similarity=0.095 Sum_probs=160.4
Q ss_pred eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCC
Q 010287 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (513)
Q Consensus 116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 195 (513)
..+.| ++|++++++++.||.|.++|+.+++........
T Consensus 40 ~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G---------------------------------------- 77 (369)
T PF02239_consen 40 AGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVG---------------------------------------- 77 (369)
T ss_dssp EEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S----------------------------------------
T ss_pred eEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecC----------------------------------------
Confidence 34567 568889999999999999999998755432211
Q ss_pred CCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccC
Q 010287 196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVK 273 (513)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~ 273 (513)
....++++++||++++++ ..+.+.++|.++.+....+- ..
T Consensus 78 -------------------------------------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~-~~ 119 (369)
T PF02239_consen 78 -------------------------------------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP-TG 119 (369)
T ss_dssp -------------------------------------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE---
T ss_pred -------------------------------------CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc-cc
Confidence 225789999999999987 49999999998766544331 10
Q ss_pred ccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC
Q 010287 274 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 353 (513)
Q Consensus 274 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~ 353 (513)
..........+..+..+|..+.++++.-..+.|.+-|........ .+.++.. .......|+|+++
T Consensus 120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~--~~~i~~g-------------~~~~D~~~dpdgr 184 (369)
T PF02239_consen 120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK--VTTIKVG-------------RFPHDGGFDPDGR 184 (369)
T ss_dssp EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE--EEEEE---------------TTEEEEEE-TTSS
T ss_pred cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc--eeeeccc-------------ccccccccCcccc
Confidence 001111345678888888884455555556888888876643211 1222221 3567889999999
Q ss_pred EEEEEe-C-CeEEEEEccCCCCCeeeeeccccc-ccccccccccCCccceeeEEEe--CCCCEEEEEeCCCcEEEEecCC
Q 010287 354 HILSRD-Y-MTLKLWDINMDSGPVATFQVHEHL-RPKLCDLYENDSIFDKFECCLS--GDGGRVATGSYSNLFRVFGCSE 428 (513)
Q Consensus 354 ~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~vwd~~~ 428 (513)
+++++. . ..|-++|.+. ++.+..+...... ......+.+.. ....|. ..+...++.-....+.+||..+
T Consensus 185 y~~va~~~sn~i~viD~~~-~k~v~~i~~g~~p~~~~~~~~php~-----~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~ 258 (369)
T PF02239_consen 185 YFLVAANGSNKIAVIDTKT-GKLVALIDTGKKPHPGPGANFPHPG-----FGPVWATSGLGYFAIPLIGTDPVSVHDDYA 258 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-TEEEEEEE-SSSBEETTEEEEEETT-----TEEEEEEEBSSSSEEEEEE--TTT-STTTB
T ss_pred eeeecccccceeEEEeecc-ceEEEEeeccccccccccccccCCC-----cceEEeeccccceecccccCCccccchhhc
Confidence 988754 3 8999999885 5554443321111 00011111110 012232 2233333333334566788887
Q ss_pred CCccceeecCCCCceeEEEEcCCCCceeee----cCCCeEEEecCCCCCccccCCccc-cccCCeeEEEEeCCCCEEEEE
Q 010287 429 GSAESTTLEASKNPMRRQVQTPSRPSRPLG----SLSGVVRRVKGADNSALDANGNAF-DFSMKLLHLAWHPSENSIACA 503 (513)
Q Consensus 429 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~d~~i~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~sp~~~~la~~ 503 (513)
. +....++....+ .-+..+|+++++... ...+.|.+++...+. ...... .-...+.++.|++||+.+-++
T Consensus 259 w-kvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~---~~~~i~~~~~~~~~h~ef~~dG~~v~vS 333 (369)
T PF02239_consen 259 W-KVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK---VVKTITPGPGKRVVHMEFNPDGKEVWVS 333 (369)
T ss_dssp T-SEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE---EEE-HHHHHT--EEEEEE-TTSSEEEEE
T ss_pred C-eEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc---eeEEEeccCCCcEeccEECCCCCEEEEE
Confidence 6 445667766666 677889999999887 445777774444332 111110 112359999999999986644
Q ss_pred c--CC-cEEEEeC
Q 010287 504 A--SN-SLYMYYA 513 (513)
Q Consensus 504 ~--~~-~~~i~~~ 513 (513)
. .+ .+.+|.+
T Consensus 334 ~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 334 VWDGNGAIVVYDA 346 (369)
T ss_dssp EE--TTEEEEEET
T ss_pred EecCCCEEEEEEC
Confidence 3 44 6888864
No 226
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=3.4e-12 Score=122.01 Aligned_cols=185 Identities=11% Similarity=0.077 Sum_probs=120.9
Q ss_pred cccCCeEEEEeccCCCEEEEE----cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287 230 AHDYHINSISNNSDGETFISA----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 305 (513)
Q Consensus 230 ~h~~~v~~~~~~~~~~~l~s~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 305 (513)
.|...+.+.+|+|||+.|+.. .+..|.+||+.++... .+..+...+....|+|+|..++++.+.++.
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~---------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~ 269 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE---------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGN 269 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE---------EeecCCCcccCcEECCCCCEEEEEEecCCC
Confidence 455668899999999988875 2578999999866532 223345567788999999444556666665
Q ss_pred --EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC----CeEEEEEccCCCCCeeeee
Q 010287 306 --IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQ 379 (513)
Q Consensus 306 --i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~----~~v~iwd~~~~~~~~~~~~ 379 (513)
|.+||+.++.. +.+. .+........|+|||+.|+..++ ..|+++|+. +...+.+.
T Consensus 270 ~~Iy~~d~~~~~~-----~~Lt------------~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~--g~~~~~lt 330 (435)
T PRK05137 270 TDIYTMDLRSGTT-----TRLT------------DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD--GSNPRRIS 330 (435)
T ss_pred ceEEEEECCCCce-----EEcc------------CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC--CCCeEEee
Confidence 66678776653 1111 12234567899999998887553 367777765 33334443
Q ss_pred cccccccccccccccCCccceeeEEEeCCCCEEEEEeCC---CcEEEEecCCCCccceeecCCCCceeEEEEcCCCCcee
Q 010287 380 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 456 (513)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 456 (513)
..... +....|+|||++|+..+.+ ..|.+||+..+... .+.. ...+....|+|+|+.|+
T Consensus 331 ~~~~~---------------~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~--~lt~-~~~~~~p~~spDG~~i~ 392 (435)
T PRK05137 331 FGGGR---------------YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER--ILTS-GFLVEGPTWAPNGRVIM 392 (435)
T ss_pred cCCCc---------------ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE--eccC-CCCCCCCeECCCCCEEE
Confidence 22211 1257899999999876543 36888888654322 2221 22456789999999987
Q ss_pred eecC
Q 010287 457 LGSL 460 (513)
Q Consensus 457 ~~~~ 460 (513)
..+.
T Consensus 393 ~~~~ 396 (435)
T PRK05137 393 FFRQ 396 (435)
T ss_pred EEEc
Confidence 6544
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.1e-12 Score=124.74 Aligned_cols=219 Identities=13% Similarity=0.110 Sum_probs=131.9
Q ss_pred cccCCeEEEEeccCCCEEEEE-c---CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287 230 AHDYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 305 (513)
Q Consensus 230 ~h~~~v~~~~~~~~~~~l~s~-~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 305 (513)
.+...+.+.+|+|||+.|+.. . ...|.+||+.++... . +......+....|+||+..++++.+.+|.
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~--------l~~~~g~~~~~~~SPDG~~la~~~~~~g~ 263 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-V--------VANFKGSNSAPAWSPDGRTLAVALSRDGN 263 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-E--------eecCCCCccceEECCCCCEEEEEEccCCC
Confidence 344567889999999998875 2 346999999866532 1 12223445688999999444456777888
Q ss_pred EEEEEcC--CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecc
Q 010287 306 IRLIDMR--QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVH 381 (513)
Q Consensus 306 i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~ 381 (513)
..+|.+. .+.. +.+. .+.+......|+|||+.|+..++ +...+|.+...+.....+...
T Consensus 264 ~~Iy~~d~~~~~~-----~~lt------------~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~ 326 (427)
T PRK02889 264 SQIYTVNADGSGL-----RRLT------------QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT 326 (427)
T ss_pred ceEEEEECCCCCc-----EECC------------CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC
Confidence 7777653 3221 1111 12233556789999998886553 667777665323333333222
Q ss_pred cccccccccccccCCccceeeEEEeCCCCEEEEEeCCC---cEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeee
Q 010287 382 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 458 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 458 (513)
... .....|+|||++|+..+.++ .|++||+.++... .+... .......|+|+++.|+..
T Consensus 327 g~~---------------~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~--~lt~~-~~~~~p~~spdg~~l~~~ 388 (427)
T PRK02889 327 GSY---------------NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT--ALTDT-TRDESPSFAPNGRYILYA 388 (427)
T ss_pred CCC---------------cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE--EccCC-CCccCceECCCCCEEEEE
Confidence 111 11578999999998766544 6999999877433 22222 234577999999998887
Q ss_pred cCCCe-EEE--ecCCCCCccccCCccccccCCeeEEEEeCC
Q 010287 459 SLSGV-VRR--VKGADNSALDANGNAFDFSMKLLHLAWHPS 496 (513)
Q Consensus 459 ~~d~~-i~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 496 (513)
+.++. -.+ ....... ......+.+.+...+|+|-
T Consensus 389 ~~~~g~~~l~~~~~~g~~----~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 389 TQQGGRSVLAAVSSDGRI----KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EecCCCEEEEEEECCCCc----eEEeecCCCCCCCCccCCC
Confidence 65442 222 1111100 0011123567788888874
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.5e-12 Score=124.30 Aligned_cols=216 Identities=15% Similarity=0.155 Sum_probs=129.9
Q ss_pred cccCCeEEEEeccCCCEEEEE-c---CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC-
Q 010287 230 AHDYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG- 304 (513)
Q Consensus 230 ~h~~~v~~~~~~~~~~~l~s~-~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg- 304 (513)
.+...+.+.+|+|+++.|+.. . +..|++||+.++... .+........++.|+|++..++++.+.+|
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~---------~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~ 271 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE---------LVASFRGINGAPSFSPDGRRLALTLSRDGN 271 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE---------EeccCCCCccCceECCCCCEEEEEEeCCCC
Confidence 344557889999999988875 2 356999999865432 11222334457899999944555666666
Q ss_pred -cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--Ce--EEEEEccCCCCCeeeee
Q 010287 305 -SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MT--LKLWDINMDSGPVATFQ 379 (513)
Q Consensus 305 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~--v~iwd~~~~~~~~~~~~ 379 (513)
.|.+||+.++.. +.+. .+.......+|+|||+.|+..++ +. |+++|+.. ++ ...+.
T Consensus 272 ~~Iy~~d~~~g~~-----~~lt------------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~-g~-~~~lt 332 (433)
T PRK04922 272 PEIYVMDLGSRQL-----TRLT------------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG-GS-AERLT 332 (433)
T ss_pred ceEEEEECCCCCe-----EECc------------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-eEEee
Confidence 588899887653 1111 11133466899999998887654 44 55556553 32 33332
Q ss_pred cccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC---cEEEEecCCCCccceeecCCCCceeEEEEcCCCCcee
Q 010287 380 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 456 (513)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 456 (513)
..... ....+|+|||++|+..+.++ .|.+||+.++... .+.. ........|+|+|+.++
T Consensus 333 ~~g~~---------------~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~--~Lt~-~~~~~~p~~spdG~~i~ 394 (433)
T PRK04922 333 FQGNY---------------NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR--TLTP-GSLDESPSFAPNGSMVL 394 (433)
T ss_pred cCCCC---------------ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE--ECCC-CCCCCCceECCCCCEEE
Confidence 22111 12579999999998765432 6899999876433 2222 22344678999999887
Q ss_pred eecCC-Ce--EEEecCCCCCccccCCccccccCCeeEEEEeC
Q 010287 457 LGSLS-GV--VRRVKGADNSALDANGNAFDFSMKLLHLAWHP 495 (513)
Q Consensus 457 ~~~~d-~~--i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 495 (513)
..+.+ +. +.+....... ......+.+.+...+|+|
T Consensus 395 ~~s~~~g~~~L~~~~~~g~~----~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 395 YATREGGRGVLAAVSTDGRV----RQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEecCCceEEEEEECCCCc----eEEcccCCCCCCCCccCC
Confidence 76653 33 3332111100 001112345677788887
No 229
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.52 E-value=9.8e-13 Score=109.62 Aligned_cols=147 Identities=19% Similarity=0.336 Sum_probs=101.0
Q ss_pred EEEeccCCCEEEEE-c---C-------CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEE--EeCC
Q 010287 237 SISNNSDGETFISA-D---D-------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY--SSSK 303 (513)
Q Consensus 237 ~~~~~~~~~~l~s~-~---d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~--~~~d 303 (513)
.+.|+++|++|+.- . | +...+|.++..+.....+ .+. ..++|.+++|+|++ +.|+. |..+
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i-----~l~-~~~~I~~~~WsP~g-~~favi~g~~~ 82 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI-----ELK-KEGPIHDVAWSPNG-NEFAVIYGSMP 82 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee-----ecc-CCCceEEEEECcCC-CEEEEEEccCC
Confidence 57899999888753 2 1 335566654333333221 222 24569999999999 55443 4467
Q ss_pred CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--C--CeEEEEEccCCCCCeeeee
Q 010287 304 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y--MTLKLWDINMDSGPVATFQ 379 (513)
Q Consensus 304 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~--~~v~iwd~~~~~~~~~~~~ 379 (513)
+.|.+||++. +. +..+.. ..+..+.|+|+|++|++++ . |.|.+||++. .+.+....
T Consensus 83 ~~v~lyd~~~-~~----i~~~~~--------------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~~~ 142 (194)
T PF08662_consen 83 AKVTLYDVKG-KK----IFSFGT--------------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKISTFE 142 (194)
T ss_pred cccEEEcCcc-cE----eEeecC--------------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeeccc
Confidence 8999999962 22 233321 4578899999999999865 2 7899999985 66655543
Q ss_pred cccccccccccccccCCccceeeEEEeCCCCEEEEEeC------CCcEEEEecC
Q 010287 380 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY------SNLFRVFGCS 427 (513)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~vwd~~ 427 (513)
... ++.++|+|||++|++++. |+.++||+..
T Consensus 143 ~~~-----------------~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 143 HSD-----------------ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred cCc-----------------EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 222 348999999999998764 7889999986
No 230
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=4.7e-12 Score=120.85 Aligned_cols=169 Identities=13% Similarity=0.165 Sum_probs=100.9
Q ss_pred eEEEEeccCCCEEEEE--cC--CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-CCCc--EE
Q 010287 235 INSISNNSDGETFISA--DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGS--IR 307 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~--~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~--i~ 307 (513)
..+.+|+|+|+.|+.. .+ ..|++||+.++.. . .+..+......++|+|++ +.|+..+ .+|. |.
T Consensus 250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~--------~lt~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy 319 (433)
T PRK04922 250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-T--------RLTNHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIY 319 (433)
T ss_pred ccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-E--------ECccCCCCccceEECCCC-CEEEEEECCCCCceEE
Confidence 3467899999877643 33 4699999986542 2 223344445678999999 6666555 4555 55
Q ss_pred EEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C---CeEEEEEccCCCCCeeeeecccc
Q 010287 308 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEH 383 (513)
Q Consensus 308 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~---~~v~iwd~~~~~~~~~~~~~~~~ 383 (513)
++|+.++... .+ ++.+ ......+|+|||++|+..+ + ..|.+||+.. ++.. .+....
T Consensus 320 ~~dl~~g~~~--~l-t~~g--------------~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-g~~~-~Lt~~~- 379 (433)
T PRK04922 320 RVAASGGSAE--RL-TFQG--------------NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST-GSVR-TLTPGS- 379 (433)
T ss_pred EEECCCCCeE--Ee-ecCC--------------CCccCEEECCCCCEEEEEECCCCceeEEEEECCC-CCeE-ECCCCC-
Confidence 5565554321 01 1111 2344689999999998743 2 3689999874 4332 332111
Q ss_pred cccccccccccCCccceeeEEEeCCCCEEEEEeCC---CcEEEEecCCCCccceeecCCCCceeEEEEcC
Q 010287 384 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 450 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 450 (513)
. .....|+|||++|+..+.+ +.|+++++..+ ....+..+...+...+|+|
T Consensus 380 ~---------------~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~--~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 380 L---------------DESPSFAPNGSMVLYATREGGRGVLAAVSTDGR--VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred C---------------CCCceECCCCCEEEEEEecCCceEEEEEECCCC--ceEEcccCCCCCCCCccCC
Confidence 1 1157899999988866643 45777777533 3344444444455555654
No 231
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=5.2e-12 Score=120.10 Aligned_cols=172 Identities=12% Similarity=0.172 Sum_probs=98.7
Q ss_pred eEEEEeccCCCEEEE-E-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-CCCcEEEEEc
Q 010287 235 INSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDM 311 (513)
Q Consensus 235 v~~~~~~~~~~~l~s-~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~vwd~ 311 (513)
+.+.+|+|||+.|+. . .++...+|.++....... .+..+........|+||| +.|+..+ .+|...+|.+
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-------~lt~~~~~~~~~~wSpDG-~~l~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLR-------RLTQSSGIDTEPFFSPDG-RSIYFTSDRGGAPQIYRM 313 (427)
T ss_pred ccceEECCCCCEEEEEEccCCCceEEEEECCCCCcE-------ECCCCCCCCcCeEEcCCC-CEEEEEecCCCCcEEEEE
Confidence 456889999998875 3 477666665432221111 233344455678899999 6555444 4567777765
Q ss_pred C--CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC----CeEEEEEccCCCCCeeeeecccccc
Q 010287 312 R--QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQVHEHLR 385 (513)
Q Consensus 312 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~----~~v~iwd~~~~~~~~~~~~~~~~~~ 385 (513)
. ++.. +.+ .+.+ .......|+|||++|+..+. ..|.+||+.. ++. ..+.... .
T Consensus 314 ~~~~g~~--~~l-t~~g--------------~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-g~~-~~lt~~~-~- 372 (427)
T PRK02889 314 PASGGAA--QRV-TFTG--------------SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT-GQV-TALTDTT-R- 372 (427)
T ss_pred ECCCCce--EEE-ecCC--------------CCcCceEECCCCCEEEEEEccCCcEEEEEEECCC-CCe-EEccCCC-C-
Confidence 4 3221 001 1111 12345789999999987543 3699999875 433 2332111 1
Q ss_pred cccccccccCCccceeeEEEeCCCCEEEEEeCCC---cEEEEecCCCCccceeecCCCCceeEEEEcCC
Q 010287 386 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 451 (513)
Q Consensus 386 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 451 (513)
.....|+|||++|+..+.++ .+++.++. + .....+..+...+...+|+|-
T Consensus 373 --------------~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g-~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 373 --------------DESPSFAPNGRYILYATQQGGRSVLAAVSSD-G-RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred --------------ccCceECCCCCEEEEEEecCCCEEEEEEECC-C-CceEEeecCCCCCCCCccCCC
Confidence 11678999999988776443 35555553 2 333444444455555666653
No 232
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=2.9e-12 Score=110.37 Aligned_cols=166 Identities=14% Similarity=0.169 Sum_probs=120.7
Q ss_pred eEEEEeccCCCEEEE-E-cC--CeEEEEEcCCCcceeeecccCcccccc-ccCCeEEEEEeCC--CCeEEEEEeCCCcEE
Q 010287 235 INSISNNSDGETFIS-A-DD--LRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPT--HCNMLAYSSSKGSIR 307 (513)
Q Consensus 235 v~~~~~~~~~~~l~s-~-~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~--~~~~l~~~~~dg~i~ 307 (513)
+..+.-++....|++ | .. ..+.+||++..++.++-..+++..+.- -.-+++++.|-+. . +.|++++.-+.++
T Consensus 151 ~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR 229 (412)
T KOG3881|consen 151 LYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPN-YKFATITRYHQVR 229 (412)
T ss_pred eeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCC-ceEEEEecceeEE
Confidence 444555555445554 5 35 789999999776665544333322211 1345678889876 5 8999999999999
Q ss_pred EEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeee-eecccccc
Q 010287 308 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVAT-FQVHEHLR 385 (513)
Q Consensus 308 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~-~~~~~~~~ 385 (513)
+||.+.++. ++..++-.+ .+++++...|++.++++|+. +.+..||++. ++.+.. +.+-.+.
T Consensus 230 ~YDt~~qRR---PV~~fd~~E------------~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~-~kl~g~~~kg~tGs- 292 (412)
T KOG3881|consen 230 LYDTRHQRR---PVAQFDFLE------------NPISSTGLTPSGNFIYTGNTKGQLAKFDLRG-GKLLGCGLKGITGS- 292 (412)
T ss_pred EecCcccCc---ceeEecccc------------CcceeeeecCCCcEEEEecccchhheecccC-ceeeccccCCccCC-
Confidence 999987653 244444333 57999999999999999987 9999999996 554443 5555544
Q ss_pred cccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc
Q 010287 386 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 432 (513)
Q Consensus 386 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 432 (513)
+.++..+|..++|++++-|..+||+|+++.+.+
T Consensus 293 --------------irsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 293 --------------IRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred --------------cceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 348889999999999999999999999986333
No 233
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.51 E-value=4.5e-13 Score=119.88 Aligned_cols=188 Identities=13% Similarity=0.127 Sum_probs=129.2
Q ss_pred cCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccc----
Q 010287 242 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL---- 316 (513)
Q Consensus 242 ~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---- 316 (513)
+.+--++.| .-|.+++.|... .....++.. ...-....++|+.|-|.+...|+.+-.+|.+.+||......
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~-~~~sklfne---~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p 258 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPIN-FEVSKLFNE---ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAP 258 (636)
T ss_pred CCCcceEEeeccCceEEecchh-hHHHHhhhh---cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCC
Confidence 456667777 789999888764 222221111 11113478999999998878999999999999998642110
Q ss_pred cccc--------ceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccc
Q 010287 317 CDTH--------SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPK 387 (513)
Q Consensus 317 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~ 387 (513)
.... +.+........+...+.--.+.|..++|+|||++||+.+ ||.++|||..+ .+.+..++..-+.
T Consensus 259 ~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGG--- 334 (636)
T KOG2394|consen 259 SYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKSYFGG--- 334 (636)
T ss_pred cccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHhhccc---
Confidence 0000 001111111111112222335889999999999999966 59999999986 5555444333322
Q ss_pred cccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcC
Q 010287 388 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 450 (513)
Q Consensus 388 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 450 (513)
.++++|||||+||++|++|..|.||.+... +.+..-.+|..+|..++|.|
T Consensus 335 ------------LLCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 335 ------------LLCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ------------eEEEEEcCCccEEEecCCcceEEEEEeccc-eEEEeccccccceeeEeecc
Confidence 459999999999999999999999999866 55577789999999999986
No 234
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=7.1e-10 Score=95.53 Aligned_cols=206 Identities=17% Similarity=0.151 Sum_probs=136.0
Q ss_pred EEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCC----------eEEEEEeCCCCeEEEEEeC-
Q 010287 236 NSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV----------ITSAEFHPTHCNMLAYSSS- 302 (513)
Q Consensus 236 ~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~l~~~~~- 302 (513)
..+++++++++++++ ..|.|.++-++....+...++ +..|.+. +....+.|++ +++++...
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~-----~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG 165 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQ-----VVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLG 165 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCcccccee-----eeecCCCCCCccccCCccceeeeCCCC-CEEEEeecC
Confidence 678999999999998 589999999976554433321 1222222 8899999999 66666554
Q ss_pred CCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeec
Q 010287 303 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQV 380 (513)
Q Consensus 303 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~ 380 (513)
-..|.+|++..+.+.......++. ...-+.|.|+|++++...-.+ ++|.+|........+..++.
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~-------------G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~ 232 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKP-------------GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT 232 (346)
T ss_pred CceEEEEEcccCccccccccccCC-------------CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee
Confidence 568999999977654322222211 145688999999999988765 99999999864344455444
Q ss_pred ccccccccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCCCcccee---ecCCCCceeEEEEcCCCCcee
Q 010287 381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTT---LEASKNPMRRQVQTPSRPSRP 456 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~ 456 (513)
+........ ... ..-++.+++||++|.++. ....|.+|.+......+.. ...+...-+...+++.+++|+
T Consensus 233 i~tlP~dF~---g~~---~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Li 306 (346)
T COG2706 233 IDTLPEDFT---GTN---WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI 306 (346)
T ss_pred eccCccccC---CCC---ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence 332211111 011 123789999999999876 3457888887654333222 223344467899999999998
Q ss_pred eecCCC-eEEE
Q 010287 457 LGSLSG-VVRR 466 (513)
Q Consensus 457 ~~~~d~-~i~~ 466 (513)
.+..++ .+.+
T Consensus 307 aa~q~sd~i~v 317 (346)
T COG2706 307 AANQKSDNITV 317 (346)
T ss_pred EEccCCCcEEE
Confidence 887653 3444
No 235
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.50 E-value=3.8e-12 Score=106.13 Aligned_cols=139 Identities=13% Similarity=0.228 Sum_probs=86.9
Q ss_pred EEEEEeCCCCeEEEEEeC---------CCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEE
Q 010287 285 TSAEFHPTHCNMLAYSSS---------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 355 (513)
Q Consensus 285 ~~~~~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l 355 (513)
..+.|+|+|..+++.... -+...+|.++..... ...+.. ...++|.+++|+|+|..+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~---~~~i~l-----------~~~~~I~~~~WsP~g~~f 74 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP---VESIEL-----------KKEGPIHDVAWSPNGNEF 74 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc---cceeec-----------cCCCceEEEEECcCCCEE
Confidence 467899998555554441 234455555332211 111111 122569999999999987
Q ss_pred EEE--eC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC---CCcEEEEecCCC
Q 010287 356 LSR--DY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY---SNLFRVFGCSEG 429 (513)
Q Consensus 356 ~~~--~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~ 429 (513)
++. .. ..|.+||++ .+.+..+.... +..+.|+|+|++|++++. .|.|.+||.++.
T Consensus 75 avi~g~~~~~v~lyd~~--~~~i~~~~~~~-----------------~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 75 AVIYGSMPAKVTLYDVK--GKKIFSFGTQP-----------------RNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred EEEEccCCcccEEEcCc--ccEeEeecCCC-----------------ceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 653 33 899999997 56666654222 237999999999998874 467999999955
Q ss_pred CccceeecCCCCceeEEEEcCCCCceeeec
Q 010287 430 SAESTTLEASKNPMRRQVQTPSRPSRPLGS 459 (513)
Q Consensus 430 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 459 (513)
+ .+...+ ...+..+.|+|+|++++++.
T Consensus 136 ~-~i~~~~--~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 136 K-KISTFE--HSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred E-Eeeccc--cCcEEEEEEcCCCCEEEEEE
Confidence 2 222222 22345667777777776664
No 236
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.50 E-value=8e-10 Score=102.09 Aligned_cols=215 Identities=14% Similarity=0.126 Sum_probs=127.1
Q ss_pred eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeeccc------CccccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287 235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDV------KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 306 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 306 (513)
...++++|++++|+++ .+|.|.++++............ .+...........++.++|++..++++.-....|
T Consensus 89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v 168 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRV 168 (345)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEE
T ss_pred cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEE
Confidence 4578899999999998 5999999999875433332110 0111112345678999999994444444446789
Q ss_pred EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeeccccc
Q 010287 307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHL 384 (513)
Q Consensus 307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~ 384 (513)
.+|++............+..+. ....+.+.|+|++++++...+ +.|.+|++......+.....-...
T Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~-----------G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~ 237 (345)
T PF10282_consen 169 YVYDIDDDTGKLTPVDSIKVPP-----------GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL 237 (345)
T ss_dssp EEEEE-TTS-TEEEEEEEECST-----------TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred EEEEEeCCCceEEEeecccccc-----------CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec
Confidence 9999876542111112222211 145788999999999988664 999999998322222222111100
Q ss_pred ccccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCC-Cccc--eeecCCCCceeEEEEcCCCCceeeec-
Q 010287 385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEG-SAES--TTLEASKNPMRRQVQTPSRPSRPLGS- 459 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~-~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~- 459 (513)
... +... .....+.++|||++|+++. .++.|.+|++... +.+. ..+.......+.+.++|+|++|+++.
T Consensus 238 ~~~----~~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 238 PEG----FTGE--NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ 311 (345)
T ss_dssp ETT----SCSS--SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred ccc----cccc--CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence 000 0000 0123799999999988765 5678999999432 1221 23333344478999999999998775
Q ss_pred CCCeEEE
Q 010287 460 LSGVVRR 466 (513)
Q Consensus 460 ~d~~i~~ 466 (513)
.++.|.+
T Consensus 312 ~s~~v~v 318 (345)
T PF10282_consen 312 DSNTVSV 318 (345)
T ss_dssp TTTEEEE
T ss_pred CCCeEEE
Confidence 4455555
No 237
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.49 E-value=1.5e-11 Score=113.17 Aligned_cols=288 Identities=12% Similarity=0.103 Sum_probs=165.0
Q ss_pred EEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeE
Q 010287 39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (513)
Q Consensus 39 ~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i 118 (513)
..+.|+|||+++.+.+.||.|.++|+.+.+.+ .++. .......+
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v-----------------------~~i~-------------~G~~~~~i 83 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVV-----------------------ATIK-------------VGGNPRGI 83 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEE-----------------------EEEE--------------SSEEEEE
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEE-----------------------EEEe-------------cCCCcceE
Confidence 44779999999999999999999998776642 2222 12446778
Q ss_pred EEeecCCCceEEEe-ecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCC
Q 010287 119 RWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (513)
Q Consensus 119 ~~~~~~~~~~l~s~-s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 197 (513)
+++ +||++++++ ..++.+.++|.++.+..........+
T Consensus 84 ~~s--~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~--------------------------------------- 122 (369)
T PF02239_consen 84 AVS--PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP--------------------------------------- 122 (369)
T ss_dssp EE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE----------------------------------------
T ss_pred EEc--CCCCEEEEEecCCCceeEeccccccceeeccccccc---------------------------------------
Confidence 884 588898887 46899999999987765543221100
Q ss_pred CcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCcc
Q 010287 198 SFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA 275 (513)
Q Consensus 198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~ 275 (513)
.......+.++..++....++.. +.+.|.+.|....+....
T Consensus 123 ------------------------------~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~------- 165 (369)
T PF02239_consen 123 ------------------------------VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV------- 165 (369)
T ss_dssp ------------------------------TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE-------
T ss_pred ------------------------------ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce-------
Confidence 00122446778788888866665 568888888775543321
Q ss_pred ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEE-------EE
Q 010287 276 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI-------KF 348 (513)
Q Consensus 276 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i-------~~ 348 (513)
.............|+|++..++++...+..|-++|..+++.. ..++....+ |..+...+ .|
T Consensus 166 ~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v----~~i~~g~~p--------~~~~~~~~php~~g~vw 233 (369)
T PF02239_consen 166 TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV----ALIDTGKKP--------HPGPGANFPHPGFGPVW 233 (369)
T ss_dssp EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE----EEEE-SSSB--------EETTEEEEEETTTEEEE
T ss_pred eeecccccccccccCcccceeeecccccceeEEEeeccceEE----EEeeccccc--------cccccccccCCCcceEE
Confidence 112234557789999999445565677889999999887652 222221111 11122211 12
Q ss_pred e--ecCCEEEE-EeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEE----eCCCcE
Q 010287 349 A--RNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG----SYSNLF 421 (513)
Q Consensus 349 s--p~~~~l~~-~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~dg~i 421 (513)
. ..+...++ -+...+.+||... .+.++.+....... -+..+|+++++.+. ...+.|
T Consensus 234 ~~~~~~~~~~~~ig~~~v~v~d~~~-wkvv~~I~~~G~gl----------------Fi~thP~s~~vwvd~~~~~~~~~v 296 (369)
T PF02239_consen 234 ATSGLGYFAIPLIGTDPVSVHDDYA-WKVVKTIPTQGGGL----------------FIKTHPDSRYVWVDTFLNPDADTV 296 (369)
T ss_dssp EEEBSSSSEEEEEE--TTT-STTTB-TSEEEEEE-SSSS------------------EE--TT-SEEEEE-TT-SSHT-E
T ss_pred eeccccceecccccCCccccchhhc-CeEEEEEECCCCcc----------------eeecCCCCccEEeeccCCCCCceE
Confidence 2 22333322 1224555677775 77788777654431 47889999999987 456899
Q ss_pred EEEecCCCCccceeec-CCCCceeEEEEcCCCCceeeecC--CCeEEEecCC
Q 010287 422 RVFGCSEGSAESTTLE-ASKNPMRRQVQTPSRPSRPLGSL--SGVVRRVKGA 470 (513)
Q Consensus 422 ~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~~~~ 470 (513)
.++|.++. +...++. .....+..+.|+++|+.+..... ++.|.+++..
T Consensus 297 ~viD~~tl-~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~ 347 (369)
T PF02239_consen 297 QVIDKKTL-KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAK 347 (369)
T ss_dssp EEEECCGT-EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred EEEECcCc-ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECC
Confidence 99999977 3334443 23345889999999997655443 3357774433
No 238
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.48 E-value=3.3e-12 Score=114.46 Aligned_cols=237 Identities=16% Similarity=0.176 Sum_probs=146.3
Q ss_pred eEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEE-----eCCCCeEEEEEeCCCcEEEE
Q 010287 235 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF-----HPTHCNMLAYSSSKGSIRLI 309 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~l~~~~~dg~i~vw 309 (513)
+....++-.|.+|+-.-...+++|+.+.+.....-++. ..+. ....+|=.| .|.+ --++.+-.-|.+.+.
T Consensus 126 ~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k--~~y~--gt~P~cHdfn~~~a~~~g-~dllIGf~tGqvq~i 200 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDK--REYK--GTSPTCHDFNSFTATPKG-LDLLIGFTTGQVQLI 200 (636)
T ss_pred eeeccccCCCCEEEEecCCeEEEEEccCcchhccchhh--hccc--CCCCceecccccccCCCC-cceEEeeccCceEEe
Confidence 34444555677887765677899988843332221110 1111 112233333 3444 557778888999998
Q ss_pred EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC--EEEEEeCCeEEEEEccCCCC---C-e------ee
Q 010287 310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR--HILSRDYMTLKLWDINMDSG---P-V------AT 377 (513)
Q Consensus 310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~--~l~~~~~~~v~iwd~~~~~~---~-~------~~ 377 (513)
|....+. .+.+..... -.+..++++.|-|.+. ++++=.+|.+++||...... + . ..
T Consensus 201 dp~~~~~----sklfne~r~--------i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~ 268 (636)
T KOG2394|consen 201 DPINFEV----SKLFNEERL--------INKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQ 268 (636)
T ss_pred cchhhHH----HHhhhhccc--------ccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCe
Confidence 8766322 111221110 0125799999999443 33333459999998643100 0 0 01
Q ss_pred eeccc-----ccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCC
Q 010287 378 FQVHE-----HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR 452 (513)
Q Consensus 378 ~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 452 (513)
+..+. ...+..+...... .+...+|+|||++||+.+.||.++|||..+. +++..++.......+++|+|||
T Consensus 269 f~i~t~ksk~~rNPv~~w~~~~g---~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFGGLLCvcWSPDG 344 (636)
T KOG2394|consen 269 FAILTSKSKKTRNPVARWHIGEG---SINEFAFSPDGKYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFGGLLCVCWSPDG 344 (636)
T ss_pred eEEeeeeccccCCccceeEeccc---cccceeEcCCCceEEEEecCceEEEeeccHH-HHHHHHHhhccceEEEEEcCCc
Confidence 11111 0000011111112 3558999999999999999999999999965 5556777778889999999999
Q ss_pred CceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeC
Q 010287 453 PSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP 495 (513)
Q Consensus 453 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 495 (513)
+|+++|++|--|.+ |............+|.+.|..++|.|
T Consensus 345 KyIvtGGEDDLVtV---wSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 345 KYIVTGGEDDLVTV---WSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cEEEecCCcceEEE---EEeccceEEEeccccccceeeEeecc
Confidence 99999999999999 54443334445557899999999996
No 239
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=6.2e-10 Score=95.88 Aligned_cols=293 Identities=13% Similarity=0.183 Sum_probs=180.5
Q ss_pred ccccccccceeccccccccccccccEEEEEEcCCCCEEEeecC---CCcEEEEEeeC--CCCCCCccCccccccccccCC
Q 010287 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDR---GGRVVLFERTD--TRDNGGQRRDLEMMDYSMSRH 87 (513)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~---dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~ 87 (513)
.-..|++..--|+....+.+.+.+.++-++|+|++++|.++-. +|.|.-|.+.. +...
T Consensus 17 gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt----------------- 79 (346)
T COG2706 17 GIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT----------------- 79 (346)
T ss_pred ceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE-----------------
Confidence 3456777644466677778888999999999999999888764 46788888764 3321
Q ss_pred CcceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeec-CCeEEEEEccC-ceeeeeeccccCCCcccCCC
Q 010287 88 PEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNG 165 (513)
Q Consensus 88 ~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~-d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~ 165 (513)
+.-.....++. -+-++. ++++++++++.. -|.|.++.++. |.+........+.+
T Consensus 80 --~ln~~~~~g~~--------------p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g------ 135 (346)
T COG2706 80 --FLNRQTLPGSP--------------PCYVSV--DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTG------ 135 (346)
T ss_pred --EeeccccCCCC--------------CeEEEE--CCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCC------
Confidence 01111222322 366777 668889988854 68899998865 43332211111100
Q ss_pred CcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCC
Q 010287 166 PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE 245 (513)
Q Consensus 166 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 245 (513)
. . ... ......+....+.|+++
T Consensus 136 ------------------~--------------------------------~---p~~-----rQ~~~h~H~a~~tP~~~ 157 (346)
T COG2706 136 ------------------S--------------------------------G---PHE-----RQESPHVHSANFTPDGR 157 (346)
T ss_pred ------------------C--------------------------------C---CCc-----cccCCccceeeeCCCCC
Confidence 0 0 000 01112366788999999
Q ss_pred EEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEE-EEeCCCcEEEEEcCCcccccccce
Q 010287 246 TFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDMRQSALCDTHSK 322 (513)
Q Consensus 246 ~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~ 322 (513)
++++. ..-+|.+|++..+..... .+..+ .-....+.|.|+|++ ++.. .+-.+++|.+|...........+.
T Consensus 158 ~l~v~DLG~Dri~~y~~~dg~L~~~----~~~~v-~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~~~~lQ 231 (346)
T COG2706 158 YLVVPDLGTDRIFLYDLDDGKLTPA----DPAEV-KPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGKFEELQ 231 (346)
T ss_pred EEEEeecCCceEEEEEcccCccccc----ccccc-CCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCceEEEee
Confidence 99997 466799999985543221 11122 234567899999999 5554 444599999999876311111111
Q ss_pred eecc-ccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecccccccccccccccCCccc
Q 010287 323 LFEE-QEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 399 (513)
Q Consensus 323 ~~~~-~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (513)
.... +++ +.+ ..+...|.++|||++|.++.. ..|.+|.+...+..+.......... .+.
T Consensus 232 ~i~tlP~d------F~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg---------~~P-- 293 (346)
T COG2706 232 TIDTLPED------FTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEG---------QFP-- 293 (346)
T ss_pred eeccCccc------cCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCC---------cCC--
Confidence 1111 111 111 146788999999999999875 7899999886444444333222110 011
Q ss_pred eeeEEEeCCCCEEEEEeC-CCcEEEEecCCC
Q 010287 400 KFECCLSGDGGRVATGSY-SNLFRVFGCSEG 429 (513)
Q Consensus 400 v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~ 429 (513)
....|++.+++|+++.. +..|.+|.....
T Consensus 294 -R~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 294 -RDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred -ccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 16789999999998885 457889977643
No 240
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.47 E-value=9.2e-11 Score=98.61 Aligned_cols=106 Identities=17% Similarity=0.244 Sum_probs=82.9
Q ss_pred CCEEEE-E-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCc-EEEEEcCCccccccc
Q 010287 244 GETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTH 320 (513)
Q Consensus 244 ~~~l~s-~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~ 320 (513)
..+|+. | .-|.|+|-|+...... .|..+..|...|.|++.+-+| .++|++|..|+ |||||..++....
T Consensus 148 k~~LafPg~k~GqvQi~dL~~~~~~------~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~-- 218 (346)
T KOG2111|consen 148 KSLLAFPGFKTGQVQIVDLASTKPN------APSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQ-- 218 (346)
T ss_pred ceEEEcCCCccceEEEEEhhhcCcC------CceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEee--
Confidence 334444 3 4799999999855431 122568899999999999999 99999999996 7899999998743
Q ss_pred ceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccC
Q 010287 321 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM 370 (513)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~ 370 (513)
.+....+ ...|.+|+|||+..+|++++| |+|+||.++.
T Consensus 219 --E~RRG~d----------~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 219 --ELRRGVD----------RADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred --eeecCCc----------hheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 3332211 157999999999999999998 9999999974
No 241
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=4.2e-11 Score=114.52 Aligned_cols=151 Identities=11% Similarity=0.060 Sum_probs=93.1
Q ss_pred CeEEEEeccCCCEEEEE--cC--CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-CCC--cE
Q 010287 234 HINSISNNSDGETFISA--DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG--SI 306 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~--~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg--~i 306 (513)
.+.+.+|+|||+.|+.. .+ ..|++||+.++.. . .+..+........|+||+ +.|+..+ .+| .|
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~--------~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~I 316 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-T--------RLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQL 316 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-E--------EccCCCCccCceeEcCCC-CEEEEEECCCCCCeE
Confidence 35577899999887643 34 4477778875542 2 234445556779999999 6666555 344 57
Q ss_pred EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C---CeEEEEEccCCCCCeeeeeccc
Q 010287 307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHE 382 (513)
Q Consensus 307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~---~~v~iwd~~~~~~~~~~~~~~~ 382 (513)
.++|+..+.. +.+.. +.+.+....|+|||+.|+... + ..|.+||+.. .....+....
T Consensus 317 y~~d~~g~~~-----~~lt~------------~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~--~~~~~lt~~~ 377 (435)
T PRK05137 317 YVMNADGSNP-----RRISF------------GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG--SGERILTSGF 377 (435)
T ss_pred EEEECCCCCe-----EEeec------------CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC--CceEeccCCC
Confidence 7778765442 11111 113456688999999998754 2 3677788753 3333332111
Q ss_pred ccccccccccccCCccceeeEEEeCCCCEEEEEeCC------CcEEEEecCCC
Q 010287 383 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS------NLFRVFGCSEG 429 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~ 429 (513)
. +....|+|||++|+..+.+ ..++++|+..+
T Consensus 378 -~---------------~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 378 -L---------------VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred -C---------------CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 1 1267899999998765432 25777887654
No 242
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.8e-10 Score=102.85 Aligned_cols=317 Identities=15% Similarity=0.215 Sum_probs=187.4
Q ss_pred EEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeE
Q 010287 39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (513)
Q Consensus 39 ~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i 118 (513)
+-+.|||.|.||+|--..| |.+|--..-... . .-.| ..|.-+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~-----------------------~-RF~H-------------p~Vq~i 255 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRI-----------------------Q-RFYH-------------PGVQFI 255 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHH-----------------------H-hccC-------------CCceee
Confidence 6789999999999988776 899973322211 1 1123 458888
Q ss_pred EEeecCCCceEEEeec-----------CCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287 119 RWCQSANSALYLLSTN-----------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (513)
Q Consensus 119 ~~~~~~~~~~l~s~s~-----------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 187 (513)
.|+| +.++|++=+. ...++|||+.+|..+..+.....
T Consensus 256 dfSP--~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~------------------------------ 303 (698)
T KOG2314|consen 256 DFSP--NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKS------------------------------ 303 (698)
T ss_pred ecCC--ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCC------------------------------
Confidence 9966 6668888543 15688999999876654332100
Q ss_pred cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCccee
Q 010287 188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSF 267 (513)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~ 267 (513)
.. ..-.-..||.|++++|--....|.||+... +
T Consensus 304 ------------------~~-------------------------~~WP~frWS~DdKy~Arm~~~sisIyEtps----f 336 (698)
T KOG2314|consen 304 ------------------PY-------------------------LKWPIFRWSHDDKYFARMTGNSISIYETPS----F 336 (698)
T ss_pred ------------------Cc-------------------------cccceEEeccCCceeEEeccceEEEEecCc----e
Confidence 00 001236799999999876557899998763 3
Q ss_pred eecccCccccccccCCeEEEEEeCCCCeEEEEEeCC-----CcEEEEEcCCcccccccceeeccccCCCCcccccccccc
Q 010287 268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 342 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (513)
.+++.++.. -..|....|+|.+ ++||.=... -.+.+-.+.+++. +++-...+ -.
T Consensus 337 ~lld~Kslk----i~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~----iRt~nlfn------------Vs 395 (698)
T KOG2314|consen 337 MLLDKKSLK----ISGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKRE----IRTKNLFN------------VS 395 (698)
T ss_pred eeecccccC----CccccCcccCCCc-ceEEEEcccccCCcceEEEEecCccce----eeecccee------------ee
Confidence 333333322 3458889999997 777753321 1333444433332 11111110 11
Q ss_pred EEEEEEeecCCEEEEEeC-----------CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCE
Q 010287 343 ISDIKFARNGRHILSRDY-----------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 411 (513)
Q Consensus 343 v~~i~~sp~~~~l~~~~~-----------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 411 (513)
=..+.|-.+|.+|+.--+ ..+.|+.++...-++..+...+. |...+|-|.|+.
T Consensus 396 DckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~----------------vi~FaWEP~gdk 459 (698)
T KOG2314|consen 396 DCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKES----------------VIAFAWEPHGDK 459 (698)
T ss_pred ccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchh----------------eeeeeeccCCCe
Confidence 123456668888875211 35667777643444444443332 458899999987
Q ss_pred EEEEe---CCCcEEEEecCCC-CccceeecCCCCceeEEEEcCCCCceeee---cCCCeEEEecCCCCCccccCCccccc
Q 010287 412 VATGS---YSNLFRVFGCSEG-SAESTTLEASKNPMRRQVQTPSRPSRPLG---SLSGVVRRVKGADNSALDANGNAFDF 484 (513)
Q Consensus 412 l~~~~---~dg~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~~~~~~~~~~~~~~~~~~~~ 484 (513)
+++-+ ...++.+|.+++. .......+......+.+.|+|.|++++.+ |..|.+..++..-. ........-
T Consensus 460 F~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a---~~k~~~~~e 536 (698)
T KOG2314|consen 460 FAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA---DLKDTASPE 536 (698)
T ss_pred EEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchh---hhhhccCcc
Confidence 76443 2467899998843 22223333444667789999999998766 34566666322210 001111111
Q ss_pred cCCeeEEEEeCCCCEEEEEc-------CCcEEEEe
Q 010287 485 SMKLLHLAWHPSENSIACAA-------SNSLYMYY 512 (513)
Q Consensus 485 ~~~i~~~~~sp~~~~la~~~-------~~~~~i~~ 512 (513)
....+.+.|.|.|+++++++ +++..||.
T Consensus 537 h~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~t 571 (698)
T KOG2314|consen 537 HFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFT 571 (698)
T ss_pred ccccccceECCCCCEEEEeeehhhhccccceEEEE
Confidence 23468899999999999765 55666653
No 243
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.45 E-value=1.2e-09 Score=100.84 Aligned_cols=275 Identities=13% Similarity=0.177 Sum_probs=159.6
Q ss_pred ccccEEEEEEcCCCCEEEeecC----CCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 34 EVDIISAIEFDKSGDHLATGDR----GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 34 h~~~V~~v~~sp~g~~latg~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
-....+.++++|++++|.+... +|.|..|++..... ............
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-------------------~L~~~~~~~~~g--------- 86 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-------------------TLTLLNSVPSGG--------- 86 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-------------------EEEEEEEEEESS---------
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-------------------eeEEeeeeccCC---------
Confidence 4456677899999999888765 57899999876421 001111111011
Q ss_pred cccccceeEEEeecCCCceEEEee-cCCeEEEEEccC-ceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s-~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 187 (513)
.....++. ++++.+|+++. .+|.|.++++.. +.+..........+ ..|+-
T Consensus 87 ---~~p~~i~~--~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g-------------------~g~~~---- 138 (345)
T PF10282_consen 87 ---SSPCHIAV--DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEG-------------------SGPNP---- 138 (345)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEE-------------------EESST----
T ss_pred ---CCcEEEEE--ecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCC-------------------CCCcc----
Confidence 23456777 55788888885 589999999986 44433221110000 00000
Q ss_pred cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcc
Q 010287 188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQ 265 (513)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~ 265 (513)
.........++.++|+++++++. ....|.+|++.....
T Consensus 139 ----------------------------------------~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~ 178 (345)
T PF10282_consen 139 ----------------------------------------DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTG 178 (345)
T ss_dssp ----------------------------------------TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-
T ss_pred ----------------------------------------cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCc
Confidence 01112446789999999999887 477899999986552
Q ss_pred eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC--CcccccccceeeccccCCCCccccccccccE
Q 010287 266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR--QSALCDTHSKLFEEQEAPGTRSFFTEIIASI 343 (513)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 343 (513)
.+.... ...+ ......+.+.|+|++..++++.-.++.|.++++. ++.. +.+......... ..+ ....
T Consensus 179 ~l~~~~--~~~~-~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~--~~~~~~~~~~~~-----~~~-~~~~ 247 (345)
T PF10282_consen 179 KLTPVD--SIKV-PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL--TEIQTISTLPEG-----FTG-ENAP 247 (345)
T ss_dssp TEEEEE--EEEC-STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE--EEEEEEESCETT-----SCS-SSSE
T ss_pred eEEEee--cccc-ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce--eEEEEeeecccc-----ccc-cCCc
Confidence 221100 0011 2355689999999995555666678999999988 3322 111111111000 000 1257
Q ss_pred EEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe-CCCc
Q 010287 344 SDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNL 420 (513)
Q Consensus 344 ~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~ 420 (513)
..|.++|||++|+++.. +.|.+|++......+..+..-.... .. -..+.++|+|++|+++. .++.
T Consensus 248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G---------~~---Pr~~~~s~~g~~l~Va~~~s~~ 315 (345)
T PF10282_consen 248 AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGG---------KF---PRHFAFSPDGRYLYVANQDSNT 315 (345)
T ss_dssp EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESS---------SS---EEEEEE-TTSSEEEEEETTTTE
T ss_pred eeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCC---------CC---ccEEEEeCCCCEEEEEecCCCe
Confidence 88999999999998764 8999999953233333322111000 00 12789999999999877 6678
Q ss_pred EEEEecC
Q 010287 421 FRVFGCS 427 (513)
Q Consensus 421 i~vwd~~ 427 (513)
|.+|++.
T Consensus 316 v~vf~~d 322 (345)
T PF10282_consen 316 VSVFDID 322 (345)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999774
No 244
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=2.2e-11 Score=113.01 Aligned_cols=302 Identities=11% Similarity=0.149 Sum_probs=198.6
Q ss_pred cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccc
Q 010287 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (513)
Q Consensus 33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (513)
.......|++|+....|||+|+.||.+++-.+.+...-... +.|... ......+.+.||.
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~-~glaa~-------snLsmNQtLeGH~------------ 71 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNK-SGLAAA-------SNLSMNQTLEGHN------------ 71 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccc-cccccc-------cccchhhhhccCc------------
Confidence 34568899999999999999999999999998765542211 112111 1334557789999
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
..|..+.| +.+...|-++..+|.|.+|-+-.+.......
T Consensus 72 ~sV~vvTW--Ne~~QKLTtSDt~GlIiVWmlykgsW~EEMi--------------------------------------- 110 (1189)
T KOG2041|consen 72 ASVMVVTW--NENNQKLTTSDTSGLIIVWMLYKGSWCEEMI--------------------------------------- 110 (1189)
T ss_pred ceEEEEEe--ccccccccccCCCceEEEEeeecccHHHHHh---------------------------------------
Confidence 88999999 4566788888899999999988775321100
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
.....+-|.+++|+.+|..++.. .||.|.+=.++ +++.+..
T Consensus 111 -----------------------------------NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgK-- 152 (1189)
T KOG2041|consen 111 -----------------------------------NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGK-- 152 (1189)
T ss_pred -----------------------------------hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecch--
Confidence 01122448899999999999988 79999888776 3333321
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccc-ceeeccccCCCCccccccccccEEEEEEe-
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH-SKLFEEQEAPGTRSFFTEIIASISDIKFA- 349 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~i~~s- 349 (513)
.+++ .....+.|++|. ..++.+-.+|.+.+||........-. .....+.. .+......|..+.|.
T Consensus 153 ----eLkg--~~l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg------~~s~~~~kia~i~w~~ 219 (1189)
T KOG2041|consen 153 ----ELKG--QLLAHVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTG------IFSNFPTKIAEIEWNT 219 (1189)
T ss_pred ----hcch--heccceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeee------eecCCCccccceeecc
Confidence 2222 224578899998 78888888999999996543211000 00001000 011111224455553
Q ss_pred -------ecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC---
Q 010287 350 -------RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS--- 418 (513)
Q Consensus 350 -------p~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--- 418 (513)
|+...|+.+-+ |.+.|..-.++..++-.-.+-. +....|+++|.+|+.++.+
T Consensus 220 g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~-----------------~vgakWnh~G~vLAvcG~~~da 282 (1189)
T KOG2041|consen 220 GPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMK-----------------IVGAKWNHNGAVLAVCGNDSDA 282 (1189)
T ss_pred CccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccE-----------------eecceecCCCcEEEEccCcccc
Confidence 57788888876 8888876654344433222211 3478999999999988764
Q ss_pred ------CcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 419 ------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 419 ------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
+.|.+|..- +....+++.....++.+.|-..|-.+|.+ .|+.|.+
T Consensus 283 ~~~~d~n~v~Fysp~--G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyf 333 (1189)
T KOG2041|consen 283 DEPTDSNKVHFYSPY--GHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYF 333 (1189)
T ss_pred cCccccceEEEeccc--hhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEE
Confidence 356777655 46677888888889999997766666554 4666665
No 245
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.39 E-value=2.5e-11 Score=102.90 Aligned_cols=225 Identities=16% Similarity=0.174 Sum_probs=136.1
Q ss_pred CCeEEEEeccCCC---EEEEEcCCeEEEEEcCCCccee-----------------ee---------cccCccc--ccccc
Q 010287 233 YHINSISNNSDGE---TFISADDLRINLWNLEISNQSF-----------------NI---------VDVKPAN--MEDLT 281 (513)
Q Consensus 233 ~~v~~~~~~~~~~---~l~s~~d~~i~vwd~~~~~~~~-----------------~~---------~~~~~~~--~~~~~ 281 (513)
..|..+.|.++++ +|+++.|.+|++|.+....... ++ +...|.. -..|.
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 3477888887643 4455589999999876432211 00 0001111 14678
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec-CCEEEEE-e
Q 010287 282 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSR-D 359 (513)
Q Consensus 282 ~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~l~~~-~ 359 (513)
-.|.++.++.|. ..+++ ..|=.|.+|++.-.... ....+..... +.....-|++..|+|. ...++-. +
T Consensus 165 yhiNSIS~NsD~-Et~lS-ADdLRINLWnlei~d~s---FnIVDIKP~n-----mEeLteVITsaEFhp~~cn~f~YSSS 234 (433)
T KOG1354|consen 165 YHINSISVNSDK-ETFLS-ADDLRINLWNLEIIDQS---FNIVDIKPAN-----MEELTEVITSAEFHPHHCNVFVYSSS 234 (433)
T ss_pred eEeeeeeecCcc-ceEee-ccceeeeeccccccCCc---eeEEEccccC-----HHHHHHHHhhhccCHhHccEEEEecC
Confidence 889999999997 55554 47789999998653321 2222211110 2333456888999994 3444444 4
Q ss_pred CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCC
Q 010287 360 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS 439 (513)
Q Consensus 360 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 439 (513)
.|+|++-|++...-+...-+.-+.+......-+-...+..|..+.|+++|+|+++-.. -+|++||+....+...+...|
T Consensus 235 KGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh 313 (433)
T KOG1354|consen 235 KGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH 313 (433)
T ss_pred CCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence 5999999998422111111111111111111122234456779999999999997665 589999996554444555433
Q ss_pred C------------Cc---eeEEEEcCCCCceeeecCCCeEEEec
Q 010287 440 K------------NP---MRRQVQTPSRPSRPLGSLSGVVRRVK 468 (513)
Q Consensus 440 ~------------~~---v~~~~~~~~~~~l~~~~~d~~i~~~~ 468 (513)
. .. -..++|+.++.++.+|+....+++..
T Consensus 314 ~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 314 EYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred HhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence 2 11 23578899999999999999999943
No 246
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.38 E-value=2.1e-10 Score=102.65 Aligned_cols=323 Identities=14% Similarity=0.140 Sum_probs=185.6
Q ss_pred ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (513)
Q Consensus 34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (513)
..-++..++|||.|.+|++....| |.+|.-...... ..+. | .
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l-----------------------~~~~-~-------------~ 72 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKL-----------------------VRFR-H-------------P 72 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhhe-----------------------eeee-c-------------C
Confidence 346889999999999999987764 999985433321 1111 1 3
Q ss_pred cceeEEEeecCCCceEEEeecCC---------------eEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCce
Q 010287 114 KINKIRWCQSANSALYLLSTNDK---------------TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178 (513)
Q Consensus 114 ~i~~i~~~~~~~~~~l~s~s~d~---------------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (513)
.|..+.|+| ++.+|.+-+... .+.+||+.++.+...+.....+ ...+..+.
T Consensus 73 ~V~~~~fSP--~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~------------~~~Wp~~k 138 (561)
T COG5354 73 DVKYLDFSP--NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP------------YLGWPVLK 138 (561)
T ss_pred CceecccCc--ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc------------ccccceee
Confidence 477777754 666777755433 4899999999887766544332 01112333
Q ss_pred eccCCCcccccc----------------------CCCCCCCCcCCCCCCc-eeceeeccCCcccccceeeE----eeccc
Q 010287 179 YMANGGCGERNF----------------------GCASNDSSFPPGGVSS-LRLPVVTSQETNLVAGCRRI----YAHAH 231 (513)
Q Consensus 179 ~~~~g~~~~~~~----------------------~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~----~~~~h 231 (513)
|+.+.++...+. .....++.+++.+++. +..|-....+.......... .+..+
T Consensus 139 ~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk 218 (561)
T COG5354 139 FSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK 218 (561)
T ss_pred eeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee
Confidence 444433322111 1112245555553333 34443332222111111100 00000
Q ss_pred c---CCeEEEEeccCCCEEEEE------------cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeE
Q 010287 232 D---YHINSISNNSDGETFISA------------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNM 296 (513)
Q Consensus 232 ~---~~v~~~~~~~~~~~l~s~------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 296 (513)
+ -.=..+.|.+.|++|+.- ++..++++++... .+.+ . ....++|...+|.|.+ +.
T Consensus 219 ~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~--~i~V------~-~~~~~pVhdf~W~p~S-~~ 288 (561)
T COG5354 219 NLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER--SIPV------E-KDLKDPVHDFTWEPLS-SR 288 (561)
T ss_pred eeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc--ccce------e-ccccccceeeeecccC-Cc
Confidence 0 001246677777776631 1345667766622 1111 1 1457899999999998 55
Q ss_pred EEEE--eCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C---CeEEEEEccC
Q 010287 297 LAYS--SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINM 370 (513)
Q Consensus 297 l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~---~~v~iwd~~~ 370 (513)
|++. ..+-.+.++|++..-. +..++ +.-..+.|+|.+++++.++ + |.+.+||...
T Consensus 289 F~vi~g~~pa~~s~~~lr~Nl~-------~~~Pe------------~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 289 FAVISGYMPASVSVFDLRGNLR-------FYFPE------------QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred eeEEecccccceeecccccceE-------EecCC------------cccccccccCcccEEEEecCCccccceEEeccCC
Confidence 5544 4688999999886521 11111 2345678999999998853 2 9999999885
Q ss_pred CCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe------CCCcEEEEecCCCCccceeecCCCCcee
Q 010287 371 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS------YSNLFRVFGCSEGSAESTTLEASKNPMR 444 (513)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~~~~~v~ 444 (513)
....+..+.+.... -+.|+||++++.+.. .|..+.|||+... ... ...
T Consensus 350 rf~~~~~~~~~n~s-----------------~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~-~~f--------el~ 403 (561)
T COG5354 350 RFKVAGAFNGLNTS-----------------YCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA-KVF--------ELT 403 (561)
T ss_pred ceEEEEEeecCCce-----------------EeeccCCceEEEecCCCcccccCcceEEEEecCc-hhh--------hhh
Confidence 33333345444322 578999999988664 3788999998744 211 344
Q ss_pred EEEEcCCCCceeeecCCCe
Q 010287 445 RQVQTPSRPSRPLGSLSGV 463 (513)
Q Consensus 445 ~~~~~~~~~~l~~~~~d~~ 463 (513)
.+.|.|.+++..+.+.+..
T Consensus 404 ~~~W~p~~~~~ttsSs~~~ 422 (561)
T COG5354 404 NITWDPSGQYVTTSSSCPK 422 (561)
T ss_pred hccccCCcccceeeccCCC
Confidence 6677777777766666553
No 247
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.35 E-value=4.6e-10 Score=107.63 Aligned_cols=148 Identities=10% Similarity=0.138 Sum_probs=89.3
Q ss_pred eEEEEeccCCCEEEEE--c--CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC-CC--cEE
Q 010287 235 INSISNNSDGETFISA--D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIR 307 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~--~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i~ 307 (513)
+.+++|+|+++.|+.. . ...|++|++.++... .+..+........|+|++ +.|+..+. ++ .|.
T Consensus 236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~---------~l~~~~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy 305 (417)
T TIGR02800 236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT---------RLTNGPGIDTEPSWSPDG-KSIAFTSDRGGSPQIY 305 (417)
T ss_pred ccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE---------ECCCCCCCCCCEEECCCC-CEEEEEECCCCCceEE
Confidence 4567899999877653 2 346888898755322 222333444567899998 66655444 44 566
Q ss_pred EEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-C---eEEEEEccCCCCCeeeeecccc
Q 010287 308 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M---TLKLWDINMDSGPVATFQVHEH 383 (513)
Q Consensus 308 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~---~v~iwd~~~~~~~~~~~~~~~~ 383 (513)
++|+.+++. ..+.. +........|+|+|++++.+.. + .|.+||+.. + ....+.....
T Consensus 306 ~~d~~~~~~-----~~l~~------------~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~-~-~~~~l~~~~~ 366 (417)
T TIGR02800 306 MMDADGGEV-----RRLTF------------RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG-G-GERVLTDTGL 366 (417)
T ss_pred EEECCCCCE-----EEeec------------CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC-C-CeEEccCCCC
Confidence 777665442 11111 1134567889999999887653 3 788888774 2 2233322111
Q ss_pred cccccccccccCCccceeeEEEeCCCCEEEEEeCCC---cEEEEecC
Q 010287 384 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCS 427 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~ 427 (513)
.....|+||+++|+..+.++ .+++.+..
T Consensus 367 ----------------~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 367 ----------------DESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred ----------------CCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 11568999999988776543 35555543
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.35 E-value=2.2e-10 Score=109.85 Aligned_cols=186 Identities=14% Similarity=0.137 Sum_probs=117.9
Q ss_pred ccCCeEEEEeccCCCEEEEE-c---CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC--
Q 010287 231 HDYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG-- 304 (513)
Q Consensus 231 h~~~v~~~~~~~~~~~l~s~-~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-- 304 (513)
+...+...+|+|++++|+.+ . ...|++||+.++... .+..+...+.++.|+|++..++++.+.++
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~---------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 258 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE---------KVASFPGMNGAPAFSPDGSKLAVSLSKDGNP 258 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE---------EeecCCCCccceEECCCCCEEEEEECCCCCc
Confidence 33457788899999999876 2 357999999866432 12233455667899999944445555555
Q ss_pred cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--C--eEEEEEccCCCCCeeeeec
Q 010287 305 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVATFQV 380 (513)
Q Consensus 305 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~--~v~iwd~~~~~~~~~~~~~ 380 (513)
.|.+||+.++... .+.. +........|+|||+.|+..++ + .|+++|+.. ++ ...+..
T Consensus 259 ~i~~~d~~~~~~~-----~l~~------------~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-~~-~~~l~~ 319 (417)
T TIGR02800 259 DIYVMDLDGKQLT-----RLTN------------GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-GE-VRRLTF 319 (417)
T ss_pred cEEEEECCCCCEE-----ECCC------------CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEeec
Confidence 5888888765431 1111 1123345689999998876543 3 577777663 33 333332
Q ss_pred ccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC---cEEEEecCCCCccceeecCCCCceeEEEEcCCCCceee
Q 010287 381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 457 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 457 (513)
+... .....|+|+|++|+.++.++ .|.+||+.++.. ..+... .......|+|+++.|+.
T Consensus 320 ~~~~---------------~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~--~~l~~~-~~~~~p~~spdg~~l~~ 381 (417)
T TIGR02800 320 RGGY---------------NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE--RVLTDT-GLDESPSFAPNGRMILY 381 (417)
T ss_pred CCCC---------------ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe--EEccCC-CCCCCceECCCCCEEEE
Confidence 2211 22678999999999887765 788999886532 222222 12345689999998887
Q ss_pred ecCCC
Q 010287 458 GSLSG 462 (513)
Q Consensus 458 ~~~d~ 462 (513)
.+.++
T Consensus 382 ~~~~~ 386 (417)
T TIGR02800 382 ATTRG 386 (417)
T ss_pred EEeCC
Confidence 76654
No 249
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=7.1e-10 Score=105.88 Aligned_cols=167 Identities=13% Similarity=0.182 Sum_probs=94.2
Q ss_pred EEEeccCCCEEEEE--cCC--eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEE-EeCCCc--EEEE
Q 010287 237 SISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKGS--IRLI 309 (513)
Q Consensus 237 ~~~~~~~~~~l~s~--~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~--i~vw 309 (513)
..+|+|||+.|+.. .++ .|+++|+.+++. . .+..+........|+||+ +.|+. ...++. |.++
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~--------~lt~~~~~~~~p~wSpDG-~~I~f~s~~~g~~~Iy~~ 335 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-T--------RITRHRAIDTEPSWHPDG-KSLIFTSERGGKPQIYRV 335 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-E--------ECccCCCCccceEECCCC-CEEEEEECCCCCceEEEE
Confidence 57899999988754 355 477778875432 1 223344456778999999 55544 444454 5555
Q ss_pred EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-C--eEEEEEccCCCCCeeeeecccccc
Q 010287 310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-M--TLKLWDINMDSGPVATFQVHEHLR 385 (513)
Q Consensus 310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~--~v~iwd~~~~~~~~~~~~~~~~~~ 385 (513)
|+.+++... + ++.. ......+|+|||++|+..+ . + .|.++|+.. +. ...+......
T Consensus 336 dl~~g~~~~--L-t~~g--------------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~lt~~~~d- 395 (448)
T PRK04792 336 NLASGKVSR--L-TFEG--------------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET-GA-MQVLTSTRLD- 395 (448)
T ss_pred ECCCCCEEE--E-ecCC--------------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCC-CC-eEEccCCCCC-
Confidence 666554310 1 1111 1223468999999988743 2 4 455566653 32 2333211100
Q ss_pred cccccccccCCccceeeEEEeCCCCEEEEEeC-CCc--EEEEecCCCCccceeecCCCCceeEEEEcC
Q 010287 386 PKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNL--FRVFGCSEGSAESTTLEASKNPMRRQVQTP 450 (513)
Q Consensus 386 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 450 (513)
....|+|||++|+..+. ++. +++++.. + .....+..+...+....|+|
T Consensus 396 ---------------~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G-~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 396 ---------------ESPSVAPNGTMVIYSTTYQGKQVLAAVSID-G-RFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ---------------CCceECCCCCEEEEEEecCCceEEEEEECC-C-CceEECcCCCCCcCCCccCC
Confidence 14579999998876553 343 6677764 3 23344444444455566665
No 250
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.33 E-value=5.2e-10 Score=93.11 Aligned_cols=192 Identities=10% Similarity=0.011 Sum_probs=126.4
Q ss_pred eEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC
Q 010287 235 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 313 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 313 (513)
..++.|++.+..++++ ++|.+.+-+..... +.+. +..+.|...+....|+...++++++|+.|+.+..||+|.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~-le~v-----q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~ 197 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMV-LEKV-----QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI 197 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceee-eeec-----ccccccceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence 4578899988889998 79998855543222 1111 256789999999999998889999999999999999984
Q ss_pred cccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccc
Q 010287 314 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL 391 (513)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
... ..+.. .+-|...|.+|.-+| .+.+|++|+. ..|++||.++-++++..-....
T Consensus 198 p~~-----~i~~n---------~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~G--------- 254 (339)
T KOG0280|consen 198 PKT-----FIWHN---------SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGG--------- 254 (339)
T ss_pred Ccc-----eeeec---------ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcccc---------
Confidence 321 11111 234667899998887 6889999986 9999999997577775443332
Q ss_pred cccCCccceeeEEEeCCC--CEEEEEeCCCcEEEEecCCCCccc----eeecCCCCceeEEEEcCCCCceeeec-CCCe
Q 010287 392 YENDSIFDKFECCLSGDG--GRVATGSYSNLFRVFGCSEGSAES----TTLEASKNPMRRQVQTPSRPSRPLGS-LSGV 463 (513)
Q Consensus 392 ~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vwd~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~ 463 (513)
+|+.+.++|.- ..|+++-.+| .+|-+.+.+..+. ...+.|.+-...--|.....++|+++ .|+.
T Consensus 255 -------GVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~ 325 (339)
T KOG0280|consen 255 -------GVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKK 325 (339)
T ss_pred -------ceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccc
Confidence 26788888853 3455555555 5666666543331 22233443333333333334567664 3444
No 251
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=1.1e-09 Score=99.37 Aligned_cols=196 Identities=11% Similarity=0.119 Sum_probs=130.7
Q ss_pred EEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeE
Q 010287 285 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTL 363 (513)
Q Consensus 285 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v 363 (513)
.+++++.-. --|+.++....|.-+++..|.. +..|... .+.+++|..++...+|++|+. |.|
T Consensus 137 RDm~y~~~s-cDly~~gsg~evYRlNLEqGrf----L~P~~~~------------~~~lN~v~in~~hgLla~Gt~~g~V 199 (703)
T KOG2321|consen 137 RDMKYHKPS-CDLYLVGSGSEVYRLNLEQGRF----LNPFETD------------SGELNVVSINEEHGLLACGTEDGVV 199 (703)
T ss_pred ccccccCCC-ccEEEeecCcceEEEEcccccc----ccccccc------------cccceeeeecCccceEEecccCceE
Confidence 355565444 2344555667788888888775 2223322 267999999999999999985 999
Q ss_pred EEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCce
Q 010287 364 KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPM 443 (513)
Q Consensus 364 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v 443 (513)
..||.+. ...+..+...... ......+....|+++.|+.+|-.+++|+.+|.+.|||+++....+..-.+..-|+
T Consensus 200 EfwDpR~-ksrv~~l~~~~~v----~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi 274 (703)
T KOG2321|consen 200 EFWDPRD-KSRVGTLDAASSV----NSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPI 274 (703)
T ss_pred EEecchh-hhhheeeeccccc----CCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccce
Confidence 9999986 5555555443321 1111112233478999999999999999999999999998765544444556688
Q ss_pred eEEEEcCCC--CceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCc
Q 010287 444 RRQVQTPSR--PSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS 507 (513)
Q Consensus 444 ~~~~~~~~~--~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~ 507 (513)
..+.|.+.+ ..+++. ....++| |+... -......+....++.+++-|++.++.+|-++.
T Consensus 275 ~~l~~~~~~~q~~v~S~-Dk~~~ki---Wd~~~-Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 275 KKLDWQDTDQQNKVVSM-DKRILKI---WDECT-GKPMASIEPTSDLNDFCFVPGSGMFFTANESS 335 (703)
T ss_pred eeecccccCCCceEEec-chHHhhh---ccccc-CCceeeccccCCcCceeeecCCceEEEecCCC
Confidence 888886663 334433 2344555 43321 11223334567799999999999998887554
No 252
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.30 E-value=2.7e-08 Score=102.10 Aligned_cols=359 Identities=13% Similarity=0.132 Sum_probs=188.9
Q ss_pred ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (513)
Q Consensus 34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (513)
..+.|.++.|-++...++.+..+|.|.+......... ........ ++.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~-----------------~~~E~VG~---------------vd~ 121 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE-----------------DEIEIVGS---------------VDS 121 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC-----------------ceeEEEEE---------------EcC
Confidence 3478999999999999999999999999832211100 00011111 127
Q ss_pred cceeEEEeecCCCceEEEeecCCeEEEEEcc----C---------ceeee--------eeccccCCCcccC---------
Q 010287 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQ----E---------KKVKK--------VFDWNVHPEKAAG--------- 163 (513)
Q Consensus 114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~----~---------~~~~~--------~~~~~~~~~~~~~--------- 163 (513)
.|.+++|+| |+..|+..+.++++.+-.-. . +.-+. ..+++...++..+
T Consensus 122 GI~a~~WSP--D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 122 GILAASWSP--DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cEEEEEECC--CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 799999966 77799999888888765321 1 00000 0111111111100
Q ss_pred ---CCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEe
Q 010287 164 ---NGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISN 240 (513)
Q Consensus 164 ---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 240 (513)
.+... .......++|..||.+..+.... ...+....+++|+-. +......+ .-.+--.+++|
T Consensus 200 ~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~------~~~~~~R~iRVy~Re-G~L~stSE-------~v~gLe~~l~W 264 (928)
T PF04762_consen 200 KVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE------PETGSRRVIRVYSRE-GELQSTSE-------PVDGLEGALSW 264 (928)
T ss_pred ccccCccc-cCCCceEEEECCCCcEEEEEEEE------cCCCceeEEEEECCC-ceEEeccc-------cCCCccCCccC
Confidence 11111 22234466777888875321110 011124567777654 11111111 11122347899
Q ss_pred ccCCCEEEEE-c---CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccc
Q 010287 241 NSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 316 (513)
Q Consensus 241 ~~~~~~l~s~-~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 316 (513)
-|.|++|++. . ...|.+|..+ |-+-.+ +.+ .+......|..+.|++++ ..||....|. |.+|-..+...
T Consensus 265 rPsG~lIA~~q~~~~~~~VvFfErN-GLrhge-F~l---~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHW 337 (928)
T PF04762_consen 265 RPSGNLIASSQRLPDRHDVVFFERN-GLRHGE-FTL---RFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHW 337 (928)
T ss_pred CCCCCEEEEEEEcCCCcEEEEEecC-CcEeee-Eec---CCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEE
Confidence 9999999987 2 4667777655 222111 111 222456779999999998 8888876555 99998877553
Q ss_pred ccccceeeccccCCCCccccccccccEEEEEEeec-CCEEEEEeC-CeEEEEEcc----CC-C------CCeeeeecc--
Q 010287 317 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSRDY-MTLKLWDIN----MD-S------GPVATFQVH-- 381 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~l~~~~~-~~v~iwd~~----~~-~------~~~~~~~~~-- 381 (513)
..+....+... ..+..+.|+|. ...|..... +.+..++.. .. + ..+..+.+.
T Consensus 338 YLKqei~~~~~-------------~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~l 404 (928)
T PF04762_consen 338 YLKQEIRFSSS-------------ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKL 404 (928)
T ss_pred EEEEEEEccCC-------------CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeE
Confidence 32211112111 22344777773 233333332 444443321 10 0 001111111
Q ss_pred ------cccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc-------ceee----------cC
Q 010287 382 ------EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-------STTL----------EA 438 (513)
Q Consensus 382 ------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-------~~~~----------~~ 438 (513)
...++.-...+.-....+|.+++|++++..+++-..||.|.+|........ ...+ ..
T Consensus 405 llTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (928)
T PF04762_consen 405 LLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSEL 484 (928)
T ss_pred EEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccccccccccccc
Confidence 111111111122222234679999999988999999999999985443111 0111 11
Q ss_pred CCCceeEEEEcCCCCceeeecCC
Q 010287 439 SKNPMRRQVQTPSRPSRPLGSLS 461 (513)
Q Consensus 439 ~~~~v~~~~~~~~~~~l~~~~~d 461 (513)
.......++|..+..+++....+
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~ 507 (928)
T PF04762_consen 485 PLGSLRQLAWLNDDTLLVLSDSD 507 (928)
T ss_pred ccccEEEEEEeCCCEEEEEEecC
Confidence 23456778887777766665544
No 253
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=4.2e-10 Score=107.45 Aligned_cols=215 Identities=12% Similarity=0.150 Sum_probs=123.4
Q ss_pred cccCCeEEEEeccCCCEEEEE--cC--CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287 230 AHDYHINSISNNSDGETFISA--DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 305 (513)
Q Consensus 230 ~h~~~v~~~~~~~~~~~l~s~--~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 305 (513)
.+...+.+..|+|||+.|+.. .+ ..|++||+.+++.. .+ ...........|+||+..++++.+.+|.
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~l--------t~~~g~~~~~~wSPDG~~La~~~~~~g~ 285 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KV--------TSFPGINGAPRFSPDGKKLALVLSKDGQ 285 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-Ee--------cCCCCCcCCeeECCCCCEEEEEEeCCCC
Confidence 445668889999999998875 23 36888898765432 11 1112233468999999444455666775
Q ss_pred --EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--C--eEEEEEccCCCCCeeeee
Q 010287 306 --IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVATFQ 379 (513)
Q Consensus 306 --i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~--~v~iwd~~~~~~~~~~~~ 379 (513)
|.++|+.++.. +.+. .+.......+|+|||+.|+..++ + .|+++|+.. ++ ...+.
T Consensus 286 ~~Iy~~dl~tg~~-----~~lt------------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~-~~~Lt 346 (448)
T PRK04792 286 PEIYVVDIATKAL-----TRIT------------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GK-VSRLT 346 (448)
T ss_pred eEEEEEECCCCCe-----EECc------------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEEe
Confidence 66678776543 1111 11134566889999998876543 4 455556653 33 33332
Q ss_pred cccccccccccccccCCccceeeEEEeCCCCEEEEEeC-CC--cEEEEecCCCCccceeecCCCCceeEEEEcCCCCcee
Q 010287 380 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN--LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 456 (513)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 456 (513)
..... ....+|+|||++|+..+. ++ .|.++|+.++... .+.... ......|+|+++.|+
T Consensus 347 ~~g~~---------------~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~--~lt~~~-~d~~ps~spdG~~I~ 408 (448)
T PRK04792 347 FEGEQ---------------NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ--VLTSTR-LDESPSVAPNGTMVI 408 (448)
T ss_pred cCCCC---------------CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE--EccCCC-CCCCceECCCCCEEE
Confidence 11111 115689999999886654 44 4555677766322 222211 222457999999887
Q ss_pred eecC-CCe--EEEe--cCCCCCccccCCccccccCCeeEEEEeCC
Q 010287 457 LGSL-SGV--VRRV--KGADNSALDANGNAFDFSMKLLHLAWHPS 496 (513)
Q Consensus 457 ~~~~-d~~--i~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 496 (513)
..+. ++. +.+. ++.... ......+.+...+|+|-
T Consensus 409 ~~~~~~g~~~l~~~~~~G~~~~------~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 409 YSTTYQGKQVLAAVSIDGRFKA------RLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EEEecCCceEEEEEECCCCceE------ECcCCCCCcCCCccCCC
Confidence 6554 333 3331 222111 11123456777888873
No 254
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=3.2e-10 Score=105.57 Aligned_cols=247 Identities=10% Similarity=0.093 Sum_probs=158.5
Q ss_pred eccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287 228 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 306 (513)
Q Consensus 228 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 306 (513)
+.||...|.-+.|+.+.+.|.++ .+|-|.+|-+-.+.-.-+.+ -....+.|.+++|+.+| ..+.....||.|
T Consensus 67 LeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMi------NnRnKSvV~SmsWn~dG-~kIcIvYeDGav 139 (1189)
T KOG2041|consen 67 LEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMI------NNRNKSVVVSMSWNLDG-TKICIVYEDGAV 139 (1189)
T ss_pred hccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHh------hCcCccEEEEEEEcCCC-cEEEEEEccCCE
Confidence 57999999999999999999999 59999999988665333322 12245778999999999 889999999999
Q ss_pred EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeee------e
Q 010287 307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATF------Q 379 (513)
Q Consensus 307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~------~ 379 (513)
.+=.+...+.-. +.+++ .....+.|++|.+.++.+-. |.+.+||..- .....+ .
T Consensus 140 IVGsvdGNRIwg---KeLkg--------------~~l~hv~ws~D~~~~Lf~~ange~hlydnqg--nF~~Kl~~~c~Vn 200 (1189)
T KOG2041|consen 140 IVGSVDGNRIWG---KELKG--------------QLLAHVLWSEDLEQALFKKANGETHLYDNQG--NFERKLEKDCEVN 200 (1189)
T ss_pred EEEeeccceecc---hhcch--------------heccceeecccHHHHHhhhcCCcEEEecccc--cHHHhhhhceEEe
Confidence 887665433211 11222 23567899999988877655 9999999762 211111 1
Q ss_pred cccc---cccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCcee
Q 010287 380 VHEH---LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 456 (513)
Q Consensus 380 ~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 456 (513)
+... ...++....++... -.-.-||...|+.+-..|.+.+-.-.+.... ..+.. .-.+....|+++|..||
T Consensus 201 ~tg~~s~~~~kia~i~w~~g~----~~~v~pdrP~lavcy~nGr~QiMR~eND~~P-vv~dt-gm~~vgakWnh~G~vLA 274 (1189)
T KOG2041|consen 201 GTGIFSNFPTKIAEIEWNTGP----YQPVPPDRPRLAVCYANGRMQIMRSENDPEP-VVVDT-GMKIVGAKWNHNGAVLA 274 (1189)
T ss_pred eeeeecCCCccccceeeccCc----cccCCCCCCEEEEEEcCceehhhhhcCCCCC-eEEec-ccEeecceecCCCcEEE
Confidence 1000 00011111111100 1122368889999999999988876655332 22222 24566889999999999
Q ss_pred eecCCCe---------EEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEE
Q 010287 457 LGSLSGV---------VRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYM 510 (513)
Q Consensus 457 ~~~~d~~---------i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i 510 (513)
.++.+.. |.+ ..+.+ ...+...--...|++++|-..|-.+|.+-+.-+++
T Consensus 275 vcG~~~da~~~~d~n~v~F---ysp~G-~i~gtlkvpg~~It~lsWEg~gLriA~Avdsfiyf 333 (1189)
T KOG2041|consen 275 VCGNDSDADEPTDSNKVHF---YSPYG-HIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYF 333 (1189)
T ss_pred EccCcccccCccccceEEE---eccch-hheEEEecCCceeeeeEEcCCceEEEEEecceEEE
Confidence 9987632 222 11110 11112222367899999999999999888875554
No 255
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=2.6e-09 Score=102.54 Aligned_cols=168 Identities=12% Similarity=0.153 Sum_probs=96.3
Q ss_pred EEEEeccCCCEEEEE--cCC--eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-CCC--cEEE
Q 010287 236 NSISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG--SIRL 308 (513)
Q Consensus 236 ~~~~~~~~~~~l~s~--~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg--~i~v 308 (513)
...+|+|+|+.|+.. .++ .|++||+.++... .+..+........|+|++ +.|+..+ .+| .|.+
T Consensus 246 ~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~---------~lt~~~~~~~~~~~spDg-~~i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 246 GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS---------RVTNHPAIDTEPFWGKDG-RTLYFTSDRGGKPQIYK 315 (430)
T ss_pred CCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE---------EcccCCCCcCCeEECCCC-CEEEEEECCCCCceEEE
Confidence 357899999988753 333 6888898865422 223344445678899999 5554444 444 4666
Q ss_pred EEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC----CeEEEEEccCCCCCeeeeeccccc
Q 010287 309 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQVHEHL 384 (513)
Q Consensus 309 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~----~~v~iwd~~~~~~~~~~~~~~~~~ 384 (513)
+|+.+++... + .+.. .......|+|+|++|+.... ..|.+||+.+ +. ...+... ..
T Consensus 316 ~d~~~g~~~~--l-t~~~--------------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t-g~-~~~lt~~-~~ 375 (430)
T PRK00178 316 VNVNGGRAER--V-TFVG--------------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR-GS-VRILTDT-SL 375 (430)
T ss_pred EECCCCCEEE--e-ecCC--------------CCccceEECCCCCEEEEEEccCCceEEEEEECCC-CC-EEEccCC-CC
Confidence 6766654310 1 1111 12335689999999987542 3578888875 33 2333211 11
Q ss_pred ccccccccccCCccceeeEEEeCCCCEEEEEeCC-C--cEEEEecCCCCccceeecCCCCceeEEEEcC
Q 010287 385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-N--LFRVFGCSEGSAESTTLEASKNPMRRQVQTP 450 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 450 (513)
. ....|+|||++++..+.+ + .|+++++... ....+..+...+....|+|
T Consensus 376 ~---------------~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~--~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 376 D---------------ESPSVAPNGTMLIYATRQQGRGVLMLVSINGR--VRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred C---------------CCceECCCCCEEEEEEecCCceEEEEEECCCC--ceEECcCCCCCcCCCccCC
Confidence 0 146899999998866543 3 4666676533 2233333334445555554
No 256
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.1e-09 Score=104.96 Aligned_cols=187 Identities=14% Similarity=0.130 Sum_probs=115.4
Q ss_pred ccccCCeEEEEeccCCCEEEEE--cC--CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC
Q 010287 229 HAHDYHINSISNNSDGETFISA--DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 304 (513)
Q Consensus 229 ~~h~~~v~~~~~~~~~~~l~s~--~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 304 (513)
..+...+....|+|||+.|+.. .+ ..|.+|++.++... . +......+....|+|++..++++...+|
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~--------l~~~~g~~~~~~~SpDG~~la~~~~~~g 265 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-Q--------ITNFEGLNGAPAWSPDGSKLAFVLSKDG 265 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-E--------ccCCCCCcCCeEECCCCCEEEEEEccCC
Confidence 3555678899999999998764 22 46899999866432 1 1222334457899999944444555555
Q ss_pred --cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--C--eEEEEEccCCCCCeeee
Q 010287 305 --SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVATF 378 (513)
Q Consensus 305 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~--~v~iwd~~~~~~~~~~~ 378 (513)
.|.+||+.++.. +.+.. +........|+|||+.|+..++ + .|+++|+.. ++ ...+
T Consensus 266 ~~~Iy~~d~~~~~~-----~~lt~------------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~-~~~l 326 (430)
T PRK00178 266 NPEIYVMDLASRQL-----SRVTN------------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GR-AERV 326 (430)
T ss_pred CceEEEEECCCCCe-----EEccc------------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEe
Confidence 577889877653 11111 1123456789999998876543 3 566667654 33 3333
Q ss_pred ecccccccccccccccCCccceeeEEEeCCCCEEEEEeC-CC--cEEEEecCCCCccceeecCCCCceeEEEEcCCCCce
Q 010287 379 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN--LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR 455 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 455 (513)
...... .....|+|||++|+..+. ++ .|.+||+.++.... +... .......|+|+|+.+
T Consensus 327 t~~~~~---------------~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~--lt~~-~~~~~p~~spdg~~i 388 (430)
T PRK00178 327 TFVGNY---------------NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI--LTDT-SLDESPSVAPNGTML 388 (430)
T ss_pred ecCCCC---------------ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE--ccCC-CCCCCceECCCCCEE
Confidence 211111 115789999999986654 33 57888988764322 2211 122356899999998
Q ss_pred eeecCC
Q 010287 456 PLGSLS 461 (513)
Q Consensus 456 ~~~~~d 461 (513)
+..+.+
T Consensus 389 ~~~~~~ 394 (430)
T PRK00178 389 IYATRQ 394 (430)
T ss_pred EEEEec
Confidence 876543
No 257
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=2.7e-09 Score=96.86 Aligned_cols=129 Identities=16% Similarity=0.254 Sum_probs=93.8
Q ss_pred CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEE--EEeCCCcEEEEEcCCcccccccceeeccccCC
Q 010287 253 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA--YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 330 (513)
Q Consensus 253 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~--~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 330 (513)
.++++.+++.....+. + ...++|.++.|+|++ +.|+ .|-+--.+.+||++-.-. ++-.+
T Consensus 251 q~Lyll~t~g~s~~V~--------L-~k~GPVhdv~W~~s~-~EF~VvyGfMPAkvtifnlr~~~v-------~df~e-- 311 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVP--------L-LKEGPVHDVTWSPSG-REFAVVYGFMPAKVTIFNLRGKPV-------FDFPE-- 311 (566)
T ss_pred ceEEEEEecCceEEEe--------c-CCCCCceEEEECCCC-CEEEEEEecccceEEEEcCCCCEe-------EeCCC--
Confidence 4677777763332222 1 137899999999998 5443 455678899999864321 22222
Q ss_pred CCccccccccccEEEEEEeecCCEEEEEe---C-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEe
Q 010287 331 GTRSFFTEIIASISDIKFARNGRHILSRD---Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 406 (513)
Q Consensus 331 ~~~~~~~~~~~~v~~i~~sp~~~~l~~~~---~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 406 (513)
++-+++-|+|.|++|+.++ - |.+.|||+.+ .+.+..+...... -+.|+
T Consensus 312 ----------gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~~tt-----------------~~eW~ 363 (566)
T KOG2315|consen 312 ----------GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAANTT-----------------VFEWS 363 (566)
T ss_pred ----------CCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccccccCCce-----------------EEEEc
Confidence 5678899999999998754 2 9999999997 7888777665543 68999
Q ss_pred CCCCEEEEEeC------CCcEEEEecCC
Q 010287 407 GDGGRVATGSY------SNLFRVFGCSE 428 (513)
Q Consensus 407 ~~~~~l~~~~~------dg~i~vwd~~~ 428 (513)
|||++++|++. |+.++||+...
T Consensus 364 PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 364 PDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred CCCcEEEEEeccccEEecCCeEEEEecC
Confidence 99999998875 68899999873
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.27 E-value=1.4e-09 Score=99.44 Aligned_cols=187 Identities=15% Similarity=0.177 Sum_probs=136.1
Q ss_pred cCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe------C-------------CCCeEEEEEe
Q 010287 242 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH------P-------------THCNMLAYSS 301 (513)
Q Consensus 242 ~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~-------------~~~~~l~~~~ 301 (513)
|...+++.. .||.+++|+...++...++.+. ..-.+.-++..|. | .+...++-|.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~-----~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPI-----ASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccc-----hhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 446788887 7999999999977655443211 1112333344442 2 1225788889
Q ss_pred CCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeec
Q 010287 302 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 380 (513)
Q Consensus 302 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~ 380 (513)
..|.|.+|++..++.. ..+.. ..|-+.|.++.++.+-..|.+++. +.+..|+... ...++.+..
T Consensus 78 ~~g~v~~ys~~~g~it----~~~st----------~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~-~~~~~~~~~ 142 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEIT----AKLST----------DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE-KVIIRIWKE 142 (541)
T ss_pred CCccEEEEEecCCeEE----EEEec----------CCCCCcceeeecccccCceEecCCceeEEEEeccc-ceeeeeecc
Confidence 9999999999888762 23332 235588999999998899998764 9999999985 777777776
Q ss_pred ccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCC-----CCce
Q 010287 381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS-----RPSR 455 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l 455 (513)
....+ .+++.+||+..+++++ +.|++||++++ +...++.+|.++|+.+.|..+ |.++
T Consensus 143 ~~~~~---------------~sl~is~D~~~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~v 204 (541)
T KOG4547|consen 143 QKPLV---------------SSLCISPDGKILLTAS--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGIIGKYV 204 (541)
T ss_pred CCCcc---------------ceEEEcCCCCEEEecc--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEecccccccee
Confidence 66543 3899999999999887 68999999987 667999999999999999776 6665
Q ss_pred eee-cCCCeEEE
Q 010287 456 PLG-SLSGVVRR 466 (513)
Q Consensus 456 ~~~-~~d~~i~~ 466 (513)
+++ ..++.+.+
T Consensus 205 Lssa~~~r~i~~ 216 (541)
T KOG4547|consen 205 LSSAAAERGITV 216 (541)
T ss_pred eeccccccceeE
Confidence 554 34444444
No 259
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.26 E-value=3.7e-10 Score=109.65 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=120.2
Q ss_pred EeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccc
Q 010287 239 SNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC 317 (513)
Q Consensus 239 ~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 317 (513)
-++++.-++++| .-+.|.+|+....+. |..+.+|.+.|.++.++-+| .++++.|.|.++++|++.+.+..
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~dn~--------p~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~ 210 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHEDNK--------PIRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVL 210 (967)
T ss_pred eccCcEEEEEeccccccEEEEeccccCC--------cceecccCCceEEEEEccCC-cEEEEEecCcceeeeeccccccc
Confidence 345666678888 589999999983322 22578999999999999999 99999999999999999987652
Q ss_pred cccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCC
Q 010287 318 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDS 396 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (513)
. ...-+|.+.+..+.|.|+ .+++++ |-+.++|+.. +..+..+..|...
T Consensus 211 ~---------------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~--~~~l~~y~~h~g~------------ 259 (967)
T KOG0974|consen 211 G---------------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN--GTQLEVYDEHSGK------------ 259 (967)
T ss_pred C---------------cccccccceeEEEEeccc--eeEEeccceEEEEEecc--cceehhhhhhhhc------------
Confidence 2 113568899999999998 777765 5999999776 6777777777653
Q ss_pred ccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 397 IFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 397 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
.++.++..++...++|++.|+.+++|++...
T Consensus 260 --~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 260 --GIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred --ceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 2568999999999999999999999998754
No 260
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.24 E-value=5.7e-10 Score=94.90 Aligned_cols=209 Identities=11% Similarity=0.189 Sum_probs=138.3
Q ss_pred cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
...-..+++++++++....|.+|-.+|++.-+.+...-. ...+.+....|.
T Consensus 64 ~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn-------------------km~~~r~~~~h~---------- 114 (404)
T KOG1409|consen 64 YHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN-------------------KMTFLKDYLAHQ---------- 114 (404)
T ss_pred hhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhh-------------------hcchhhhhhhhh----------
Confidence 334468899999999999999999999999888643211 111223344555
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
..|..+-|. .....+++.+.|+.+.-.-.+.+....-..+... ++.+.+..
T Consensus 115 --~~v~~~if~--~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~----------------~t~~~~d~--------- 165 (404)
T KOG1409|consen 115 --ARVSAIVFS--LTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP----------------ASALQFDA--------- 165 (404)
T ss_pred --cceeeEEec--CCceeEEEeccccceEEEeeccCCcccceEeecc----------------CCCCceee---------
Confidence 889999994 4556899999999876555554432211111000 00000000
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 269 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~ 269 (513)
.+.+.+...+.+..-.+..... ..-..+.+|.+.+.+++|.+..+.|++| .|..+.+||+--.... .
T Consensus 166 -----~~~fvGd~~gqvt~lr~~~~~~-----~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-~- 233 (404)
T KOG1409|consen 166 -----LYAFVGDHSGQITMLKLEQNGC-----QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-A- 233 (404)
T ss_pred -----EEEEecccccceEEEEEeecCC-----ceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-e-
Confidence 0224444555555444322211 2223358999999999999999999999 7999999999733322 1
Q ss_pred cccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcc
Q 010287 270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 315 (513)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 315 (513)
..+.+|...|..+...+.- ..+.+++.||.|.+||+....
T Consensus 234 -----~el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 234 -----YELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred -----eeeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEecccee
Confidence 2567899999999888876 889999999999999987643
No 261
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.24 E-value=1.6e-09 Score=98.92 Aligned_cols=207 Identities=13% Similarity=0.173 Sum_probs=146.1
Q ss_pred CCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCC
Q 010287 125 NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV 204 (513)
Q Consensus 125 ~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 204 (513)
...+++....||.+++|+...++....+... ....+.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~-------------------------------------------~~~s~t 40 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPI-------------------------------------------ASLSGT 40 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccc-------------------------------------------hhccCc
Confidence 3468999999999999999998765543221 112233
Q ss_pred CceeceeeccCCcccccceeeEeeccccCCeEEEEe----ccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCcccccc
Q 010287 205 SSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISN----NSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED 279 (513)
Q Consensus 205 ~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~----~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 279 (513)
+.-..|.+........ ..++.+ +.+...++-| ..|.|.+|+...++....+ .-..
T Consensus 41 ~~~~~w~L~~~~s~~k--------------~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~------st~~ 100 (541)
T KOG4547|consen 41 CTYTKWGLSADYSPMK--------------WLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKL------STDK 100 (541)
T ss_pred ceeEEEEEEeccchHH--------------HHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEE------ecCC
Confidence 3444555432222111 111111 2244456667 7999999999876654433 3367
Q ss_pred ccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe
Q 010287 280 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 359 (513)
Q Consensus 280 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~ 359 (513)
|.+.|.++.++.+- ..|.+++.|+.+..|+...... ++.+.... ..+.+++.+||+..+++++
T Consensus 101 h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~----~~~~~~~~------------~~~~sl~is~D~~~l~~as 163 (541)
T KOG4547|consen 101 HYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVI----IRIWKEQK------------PLVSSLCISPDGKILLTAS 163 (541)
T ss_pred CCCcceeeeccccc-CceEecCCceeEEEEeccccee----eeeeccCC------------CccceEEEcCCCCEEEecc
Confidence 89999999999887 8999999999999999987765 45555443 4689999999999999888
Q ss_pred CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC-----CCEEEEE-eCCCcEEEEecCC
Q 010287 360 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-----GGRVATG-SYSNLFRVFGCSE 428 (513)
Q Consensus 360 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~-~~dg~i~vwd~~~ 428 (513)
+.|++||+.+ .+.+..+++|...++ .+.|..+ |.++.++ ..+.-+.+|-...
T Consensus 164 -~~ik~~~~~~-kevv~~ftgh~s~v~---------------t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 -RQIKVLDIET-KEVVITFTGHGSPVR---------------TLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred -ceEEEEEccC-ceEEEEecCCCcceE---------------EEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 6999999997 999999999998854 6667665 6666643 4556677886654
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=5.4e-09 Score=99.05 Aligned_cols=221 Identities=14% Similarity=0.097 Sum_probs=121.1
Q ss_pred ccCCeEEEEeccCCCE--E-EEE-c--CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-CC
Q 010287 231 HDYHINSISNNSDGET--F-ISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SK 303 (513)
Q Consensus 231 h~~~v~~~~~~~~~~~--l-~s~-~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d 303 (513)
......+-+|+|||+. + +++ . ...|.+.++..++.. . +...........|+||| +.|+..+ .+
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~--------lt~~~g~~~~p~wSPDG-~~Laf~s~~~ 252 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-K--------ILALQGNQLMPTFSPRK-KLLAFISDRY 252 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-E--------eecCCCCccceEECCCC-CEEEEEECCC
Confidence 3344667899999875 3 234 3 346777788765432 1 22233445568999999 5555544 33
Q ss_pred C----cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEE--ccCCCCCe
Q 010287 304 G----SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWD--INMDSGPV 375 (513)
Q Consensus 304 g----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd--~~~~~~~~ 375 (513)
| .+..|++..+... ........ ..+.....+|+|||+.|+..++ +...+|. +...+...
T Consensus 253 g~~di~~~~~~~~~g~~g-~~~~lt~~------------~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 253 GNPDLFIQSFSLETGAIG-KPRRLLNE------------AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CCcceeEEEeecccCCCC-cceEeecC------------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 3 3444666543110 00111111 1123456799999998886543 5555554 43212223
Q ss_pred eeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC---CcEEEEecCCCCccceeecCCCCceeEEEEcCCC
Q 010287 376 ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR 452 (513)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 452 (513)
..+...... +....|+|||+.|+..+.+ ..|++||+.+++.. .+......+....|+|+|
T Consensus 320 ~~lt~~~~~---------------~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~--~Lt~~~~~~~~p~wSpDG 382 (428)
T PRK01029 320 RLLTKKYRN---------------SSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY--QLTTSPENKESPSWAIDS 382 (428)
T ss_pred EEeccCCCC---------------ccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE--EccCCCCCccceEECCCC
Confidence 333322211 2268899999998866543 46999999877433 232223345678999999
Q ss_pred Cceeeec-CC--CeEEEe--cCCCCCccccCCccccccCCeeEEEEeCCC
Q 010287 453 PSRPLGS-LS--GVVRRV--KGADNSALDANGNAFDFSMKLLHLAWHPSE 497 (513)
Q Consensus 453 ~~l~~~~-~d--~~i~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~ 497 (513)
+.|+... .+ ..+.+. .+.... ......+.+...+|+|..
T Consensus 383 ~~L~f~~~~~g~~~L~~vdl~~g~~~------~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 383 LHLVYSAGNSNESELYLISLITKKTR------KIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEE------EeecCCCcccCceecCCC
Confidence 9887543 22 334431 222111 111124456778888754
No 263
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.15 E-value=8.3e-10 Score=112.92 Aligned_cols=198 Identities=18% Similarity=0.311 Sum_probs=141.9
Q ss_pred cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccc
Q 010287 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (513)
Q Consensus 33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (513)
.+-..|.++.=+|.-.+.+||+.||.|++|.+..++.+ ..-..+-.
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v----------------------~~~rt~g~------------ 2251 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV----------------------VCFRTAGN------------ 2251 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE----------------------EEeeccCc------------
Confidence 44578888988999999999999999999998766642 11111122
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
..|+.+.| +..|+.+..+..||.+.+|.+..... ..
T Consensus 2252 s~vtr~~f--~~qGnk~~i~d~dg~l~l~q~~pk~~---~s--------------------------------------- 2287 (2439)
T KOG1064|consen 2252 SRVTRSRF--NHQGNKFGIVDGDGDLSLWQASPKPY---TS--------------------------------------- 2287 (2439)
T ss_pred chhhhhhh--cccCCceeeeccCCceeecccCCcce---ec---------------------------------------
Confidence 67999999 55788999999999999999873211 00
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE----cCCeEEEEEcCCCcceee
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA----DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----~d~~i~vwd~~~~~~~~~ 268 (513)
...|......+.|-. ..++++ +++.+.+||........-
T Consensus 2288 -----------------------------------~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~ 2330 (2439)
T KOG1064|consen 2288 -----------------------------------WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL 2330 (2439)
T ss_pred -----------------------------------cccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce
Confidence 134555555666654 445553 488999999764433221
Q ss_pred ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 348 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 348 (513)
+ . ..|.+.++++++.|.. ++|++|+.+|.|++||++..++.. .|+ . +
T Consensus 2331 v------~-~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql~h----~~~-----------------~----~ 2377 (2439)
T KOG1064|consen 2331 V------H-TCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLRH----TFQ-----------------A----L 2377 (2439)
T ss_pred e------e-eecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHHHH----Hhh-----------------h----h
Confidence 1 1 6799999999999998 999999999999999999876532 111 1 3
Q ss_pred eecCCEEEEEeC-CeEEEEEccCCCCCeeeeec
Q 010287 349 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 380 (513)
Q Consensus 349 sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~ 380 (513)
. ...++++|+. |.++||++.. -..+.+++.
T Consensus 2378 ~-~~~~f~~~ss~g~ikIw~~s~-~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2378 D-TREYFVTGSSEGNIKIWRLSE-FGLLHTFPS 2408 (2439)
T ss_pred h-hhheeeccCcccceEEEEccc-cchhhcCch
Confidence 3 4568888876 9999999985 455555543
No 264
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.15 E-value=2.4e-09 Score=104.16 Aligned_cols=188 Identities=13% Similarity=0.056 Sum_probs=135.4
Q ss_pred EeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEE
Q 010287 289 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWD 367 (513)
Q Consensus 289 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd 367 (513)
+.-+. ..++.++.+..+-+||...+....+ ....+ ...-....-+.++++.-++++|+- +.|.+|+
T Consensus 95 l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~----i~~~e--------r~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~ 161 (967)
T KOG0974|consen 95 LFEEN-KKIALVTSRNSLLIRDSKNSSVLSK----IQSDE--------RCTLYSSLIIGDSAEELYIASGSVFGEIIVWK 161 (967)
T ss_pred hhhhc-ceEEEEEcCceEEEEecccCceehh----cCCCc--------eEEEEeEEEEeccCcEEEEEeccccccEEEEe
Confidence 33344 6788888899999999876654211 11100 000012223344566668888886 9999999
Q ss_pred ccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEE
Q 010287 368 INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQV 447 (513)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 447 (513)
..- ......+.+|++. ++++.++-||+++++.|+|.++++|++.+.+....+.-+|...+.+++
T Consensus 162 ~~~-dn~p~~l~GHeG~---------------iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~ 225 (967)
T KOG0974|consen 162 PHE-DNKPIRLKGHEGS---------------IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACC 225 (967)
T ss_pred ccc-cCCcceecccCCc---------------eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEE
Confidence 884 3333367888876 569999999999999999999999999998666567779999999999
Q ss_pred EcCCCCceeeecCCCeEEEecCCCCCccccCCccccc-cCCeeEEEEeCCCCEEEEEc-CCcEEEE
Q 010287 448 QTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDF-SMKLLHLAWHPSENSIACAA-SNSLYMY 511 (513)
Q Consensus 448 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~-~~~~~i~ 511 (513)
+.|. .+++++.|.+.++ |.....++. ...+| ...|..++.+++...+++++ |+++.+|
T Consensus 226 ~~~n--~i~t~gedctcrv---W~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~ 285 (967)
T KOG0974|consen 226 FLPN--RIITVGEDCTCRV---WGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLW 285 (967)
T ss_pred eccc--eeEEeccceEEEE---Eecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhh
Confidence 9999 9999999999999 433322222 33344 45799999999998888777 6666655
No 265
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=6.3e-08 Score=91.85 Aligned_cols=176 Identities=11% Similarity=0.077 Sum_probs=96.9
Q ss_pred EEEEeccCCCEEEEE-c-CC--e--EEEEEcCCC--cceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-CCCcE
Q 010287 236 NSISNNSDGETFISA-D-DL--R--INLWNLEIS--NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSI 306 (513)
Q Consensus 236 ~~~~~~~~~~~l~s~-~-d~--~--i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i 306 (513)
...+|+|||+.|+.. + +| . +..|++..+ .....+ ...........+|+||| +.|+..+ .+|..
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l-------t~~~~~~~~~p~wSPDG-~~Laf~s~~~g~~ 305 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL-------LNEAFGTQGNPSFSPDG-TRLVFVSNKDGRP 305 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe-------ecCCCCCcCCeEECCCC-CEEEEEECCCCCc
Confidence 357899999888864 2 23 3 334666542 111111 11122334578999999 6555544 56766
Q ss_pred EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C---CeEEEEEccCCCCCeeeeeccc
Q 010287 307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHE 382 (513)
Q Consensus 307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~---~~v~iwd~~~~~~~~~~~~~~~ 382 (513)
.+|.+...... ...+.+ ..+...+....|||||+.|+... . ..|.+||+.. ++. ..+....
T Consensus 306 ~ly~~~~~~~g-~~~~~l------------t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~-~~Lt~~~ 370 (428)
T PRK01029 306 RIYIMQIDPEG-QSPRLL------------TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRD-YQLTTSP 370 (428)
T ss_pred eEEEEECcccc-cceEEe------------ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCe-EEccCCC
Confidence 66654221000 001111 11123467789999999888643 2 5789999875 433 3332221
Q ss_pred ccccccccccccCCccceeeEEEeCCCCEEEEEeC---CCcEEEEecCCCCccceeecCCCCceeEEEEcCC
Q 010287 383 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY---SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 451 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 451 (513)
.. +....|+|||++|+.... ...|+++|+..++.. .+......+...+|+|-
T Consensus 371 ~~---------------~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~--~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 371 EN---------------KESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR--KIVIGSGEKRFPSWGAF 425 (428)
T ss_pred CC---------------ccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EeecCCCcccCceecCC
Confidence 11 126889999998875432 356888898866332 22223334455666654
No 266
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.12 E-value=2.8e-08 Score=81.97 Aligned_cols=169 Identities=9% Similarity=0.014 Sum_probs=109.3
Q ss_pred eEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC
Q 010287 235 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 313 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 313 (513)
+.+++++++++++++. +...|..|.+......+.-+ ......+.=.+..|+... ..||++..||++.|||+|.
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~-----~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI-----YEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee-----EecccCCCceeeeeccCc-ceEEEEecCCcEEEEEecc
Confidence 6789999999999886 78899999887654433211 122334445688899988 8999999999999999997
Q ss_pred cccccccceeeccccCCCCccccccccccEEEEEEeecCC--EEEEEeC-CeEEEEEccCCCCCeeeeeccccccccccc
Q 010287 314 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR--HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 390 (513)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~--~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 390 (513)
..... ...... -..|.+.++.+.|++-|. +|+.... +.+.+.|+++ .+..+.+...+....
T Consensus 235 ~~tpm----~~~sst-------rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~-~~~~q~I~i~~d~~~---- 298 (344)
T KOG4532|consen 235 MATPM----AEISST-------RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN-YVNHQVIVIPDDVER---- 298 (344)
T ss_pred cccch----hhhccc-------CCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc-CceeeEEecCccccc----
Confidence 55321 111111 234779999999998553 3444443 9999999997 665555543332200
Q ss_pred ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
. ..-+.++...|+.++.-+.+.+.+ .+.-|++.+.
T Consensus 299 -~--~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 299 -K--HNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred -c--ccccccccccccCCCcccccccch-hhheeecccc
Confidence 0 001124467777777766665544 3555666543
No 267
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.11 E-value=7.7e-07 Score=91.61 Aligned_cols=201 Identities=14% Similarity=0.122 Sum_probs=117.4
Q ss_pred ccCCeEEEEEeCCCCeEEEEEeC---C---CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC
Q 010287 280 LTEVITSAEFHPTHCNMLAYSSS---K---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 353 (513)
Q Consensus 280 ~~~~i~~~~~~~~~~~~l~~~~~---d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~ 353 (513)
....-..++|-.|| .+||+.+. . +.++||+- .|.+. .+-+... +--.+++|.|.|.
T Consensus 208 ~dd~~~~ISWRGDG-~yFAVss~~~~~~~~R~iRVy~R-eG~L~----stSE~v~------------gLe~~l~WrPsG~ 269 (928)
T PF04762_consen 208 WDDGRVRISWRGDG-EYFAVSSVEPETGSRRVIRVYSR-EGELQ----STSEPVD------------GLEGALSWRPSGN 269 (928)
T ss_pred cCCCceEEEECCCC-cEEEEEEEEcCCCceeEEEEECC-CceEE----eccccCC------------CccCCccCCCCCC
Confidence 34456789999999 88888775 2 57899984 45531 1111110 2235689999999
Q ss_pred EEEEEeC----CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 354 HILSRDY----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 354 ~l~~~~~----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
+|++... ..|.+|.-. |-....+....... -..|..+.|++|+..||..-.|. |.+|-..+.
T Consensus 270 lIA~~q~~~~~~~VvFfErN--GLrhgeF~l~~~~~-----------~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 270 LIASSQRLPDRHDVVFFERN--GLRHGEFTLRFDPE-----------EEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred EEEEEEEcCCCcEEEEEecC--CcEeeeEecCCCCC-----------CceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 9998542 666777643 44333333322100 00145899999999999877665 999988875
Q ss_pred Cc-cceeecCC-CCceeEEEEcCCCCc-eeeecCCCeEEE-----------------------ecCCCCCccc-------
Q 010287 430 SA-ESTTLEAS-KNPMRRQVQTPSRPS-RPLGSLSGVVRR-----------------------VKGADNSALD------- 476 (513)
Q Consensus 430 ~~-~~~~~~~~-~~~v~~~~~~~~~~~-l~~~~~d~~i~~-----------------------~~~~~~~~~~------- 476 (513)
-- +.+.+... ...+..+.|+|...+ |.....+|.+.. ++|..+.-..
T Consensus 336 HWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VP 415 (928)
T PF04762_consen 336 HWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVP 415 (928)
T ss_pred EEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCC
Confidence 21 11333322 223334777775443 333333333322 2333221111
Q ss_pred --cCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 477 --ANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 477 --~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
+....+....+|.+++|++++..+|+-. ++.+.+|.
T Consensus 416 PPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 416 PPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred chHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 1122224578999999999988666554 55588775
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.11 E-value=6.2e-07 Score=80.23 Aligned_cols=144 Identities=16% Similarity=0.238 Sum_probs=104.3
Q ss_pred cccCCeEEEEeccCCCEEEEE-cCC-eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEE
Q 010287 230 AHDYHINSISNNSDGETFISA-DDL-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 307 (513)
Q Consensus 230 ~h~~~v~~~~~~~~~~~l~s~-~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 307 (513)
+|...|.-..+.-+++-++.| .|| .+-++|.++++.. .+...-+.|.++..+|+| +.++.+.....+.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k---------r~e~~lg~I~av~vs~dG-K~~vvaNdr~el~ 426 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK---------RIEKDLGNIEAVKVSPDG-KKVVVANDRFELW 426 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE---------EeeCCccceEEEEEcCCC-cEEEEEcCceEEE
Confidence 555667777777777788888 566 8999999866532 334556789999999999 8889888899999
Q ss_pred EEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEE---e-C-CeEEEEEccCCCCCeeeeeccc
Q 010287 308 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR---D-Y-MTLKLWDINMDSGPVATFQVHE 382 (513)
Q Consensus 308 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~---~-~-~~v~iwd~~~~~~~~~~~~~~~ 382 (513)
+.|+.++.. +..+..+ -+-|+.+.|+|+++++|-+ + . ..|++||+.. ++... .+...
T Consensus 427 vididngnv-----~~idkS~-----------~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy~-vTT~t 488 (668)
T COG4946 427 VIDIDNGNV-----RLIDKSE-----------YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GKIYD-VTTPT 488 (668)
T ss_pred EEEecCCCe-----eEecccc-----------cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-CeEEE-ecCCc
Confidence 999999874 3333222 1579999999999999974 2 2 7899999984 44433 22222
Q ss_pred ccccccccccccCCccceeeEEEeCCCCEEEEEe
Q 010287 383 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 416 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 416 (513)
... ++-+|.||+++|.--+
T Consensus 489 a~D---------------fsPaFD~d~ryLYfLs 507 (668)
T COG4946 489 AYD---------------FSPAFDPDGRYLYFLS 507 (668)
T ss_pred ccc---------------cCcccCCCCcEEEEEe
Confidence 111 2678999999887443
No 269
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.08 E-value=8.4e-08 Score=80.29 Aligned_cols=271 Identities=13% Similarity=0.106 Sum_probs=155.4
Q ss_pred CCceeceeeccCCcccccceeeEeeccccCCeEEEEecc---CCC-EEEEE-cCCeEEEEEcCCCcceeeecccCccccc
Q 010287 204 VSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANME 278 (513)
Q Consensus 204 ~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~-~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 278 (513)
.|.+.++++...+.......++ .....+..+.|.. ++. .++-+ ..|.|.++..........+..++...+.
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~----~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~ 120 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQC----TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKIS 120 (339)
T ss_pred ccceEEEeecccccCccceeee----ecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhh
Confidence 4556666665554433111111 1223355666643 344 33344 5899999977644433333222111111
Q ss_pred cccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEE
Q 010287 279 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILS 357 (513)
Q Consensus 279 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~ 357 (513)
.....++.|++.+ ..++++-.+|.+.+-+.....+ +.... ++.|.-+.+...|+. +..++.+
T Consensus 121 --~~~~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~l--e~vq~------------wk~He~E~Wta~f~~~~pnlvyt 183 (339)
T KOG0280|consen 121 --VVEALSLDISTSG-TKIFVSDSRGSISGVYETEMVL--EKVQT------------WKVHEFEAWTAKFSDKEPNLVYT 183 (339)
T ss_pred --heeeeEEEeeccC-ceEEEEcCCCcEEEEecceeee--eeccc------------ccccceeeeeeecccCCCceEEe
Confidence 1135678899988 7788888899988554333222 11223 344557788888986 4457778
Q ss_pred EeC-CeEEEEEccCCCCCeee-eecccccccccccccccCCccceeeEEEeC-CCCEEEEEeCCCcEEEEecCCCCccce
Q 010287 358 RDY-MTLKLWDINMDSGPVAT-FQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCSEGSAEST 434 (513)
Q Consensus 358 ~~~-~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~ 434 (513)
|+| +.+..||++.+++.+.. .+.|... |.++.-+| .+.+++||+.|-.|++||.++-++.+.
T Consensus 184 GgDD~~l~~~D~R~p~~~i~~n~kvH~~G---------------V~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~ 248 (339)
T KOG0280|consen 184 GGDDGSLSCWDIRIPKTFIWHNSKVHTSG---------------VVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF 248 (339)
T ss_pred cCCCceEEEEEecCCcceeeecceeeecc---------------eEEEecCCCCCceEEEeccccceeeeehhcccCccc
Confidence 876 99999999964544433 3444433 33555444 677999999999999999996544432
Q ss_pred eecCCCCceeEEEEcCCCC--ceeeecCCCeEEEecCCCCCccc-cCCccccccCCeeEEEEeCCCCEEEEEc--CCcEE
Q 010287 435 TLEASKNPMRRQVQTPSRP--SRPLGSLSGVVRRVKGADNSALD-ANGNAFDFSMKLLHLAWHPSENSIACAA--SNSLY 509 (513)
Q Consensus 435 ~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~sp~~~~la~~~--~~~~~ 509 (513)
.- .-.+.|+.+..+|.-. .|+++-.+|.-.+.......+.. .......|.+-...-.|.....+||+++ ++.++
T Consensus 249 ~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~ 327 (339)
T KOG0280|consen 249 KA-KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIR 327 (339)
T ss_pred cC-ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeecccccee
Confidence 22 2237899999988644 55565555554431111111101 1122224566677777765567788866 55533
Q ss_pred -EE
Q 010287 510 -MY 511 (513)
Q Consensus 510 -i~ 511 (513)
+|
T Consensus 328 ~~W 330 (339)
T KOG0280|consen 328 QLW 330 (339)
T ss_pred eee
Confidence 44
No 270
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.08 E-value=2.8e-09 Score=89.54 Aligned_cols=222 Identities=16% Similarity=0.153 Sum_probs=128.1
Q ss_pred CeEEEEeccC---CCEEEEEcCCeEEEEEcCCCcc-------------------ee--------------eecccCccc-
Q 010287 234 HINSISNNSD---GETFISADDLRINLWNLEISNQ-------------------SF--------------NIVDVKPAN- 276 (513)
Q Consensus 234 ~v~~~~~~~~---~~~l~s~~d~~i~vwd~~~~~~-------------------~~--------------~~~~~~~~~- 276 (513)
.|..+.|..+ ...|+++.|.+|++|.+..... +. .++-.+|..
T Consensus 87 Kin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rv 166 (460)
T COG5170 87 KINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRV 166 (460)
T ss_pred HhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecccee
Confidence 3677777654 3456677999999998864310 00 001112221
Q ss_pred -cccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC--C
Q 010287 277 -MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--R 353 (513)
Q Consensus 277 -~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~ 353 (513)
...|.-.|.++.++.|. ..++ ...|=.|.+|++.-...+ ....+..... +.+...-|++..|+|.. .
T Consensus 167 yaNaH~yhiNSiS~NsD~-et~l-SaDdLrINLWnl~i~D~s---FnIVDiKP~n-----meeLteVItSaeFhp~~cn~ 236 (460)
T COG5170 167 YANAHPYHINSISFNSDK-ETLL-SADDLRINLWNLEIIDGS---FNIVDIKPHN-----MEELTEVITSAEFHPEMCNV 236 (460)
T ss_pred ccccceeEeeeeeecCch-heee-eccceeeeeccccccCCc---eEEEeccCcc-----HHHHHHHHhhcccCHhHcce
Confidence 24577778999999886 5554 457789999998653321 2222211110 23333568888999943 3
Q ss_pred EEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccc
Q 010287 354 HILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 433 (513)
Q Consensus 354 ~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 433 (513)
++.+.+.|.|++-|++...-+...-+..+.....+..-+-...+..|..+.|+++|+++++-+. -++++||....+..+
T Consensus 237 fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pi 315 (460)
T COG5170 237 FMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPI 315 (460)
T ss_pred EEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCc
Confidence 4445556999999998421111111000000000000011122334568999999999987765 579999998776665
Q ss_pred eeecCCC------------Cce---eEEEEcCCCCceeeecCCCeEEE
Q 010287 434 TTLEASK------------NPM---RRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 434 ~~~~~~~------------~~v---~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.++..|. ..| ..+.|+.+.+.+.+|+.....-+
T Consensus 316 kTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgi 363 (460)
T COG5170 316 KTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGI 363 (460)
T ss_pred eeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceee
Confidence 5554322 222 24677888888888876655444
No 271
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.07 E-value=1.9e-08 Score=85.88 Aligned_cols=196 Identities=9% Similarity=0.043 Sum_probs=139.9
Q ss_pred cCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287 232 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 310 (513)
Q Consensus 232 ~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd 310 (513)
..+++++.+.++...|+.| ..|++.-+.+...-..... ++....|...+..+-|+-.. .++++.+.|..+.---
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~----~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc 142 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTF----LKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHC 142 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcch----hhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEe
Confidence 3568889999999999999 7999998876532221111 12456789999999998876 8999999998887555
Q ss_pred cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccC-CCCCeeeeeccccccccc
Q 010287 311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM-DSGPVATFQVHEHLRPKL 388 (513)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~-~~~~~~~~~~~~~~~~~~ 388 (513)
.+.+.....+ .+... .+++.+.-. +...|+. |.|.+-.+.. .-.++.++.+|...
T Consensus 143 ~e~~~~lg~Y--~~~~~---------------~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~---- 199 (404)
T KOG1409|consen 143 TESGNRLGGY--NFETP---------------ASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGE---- 199 (404)
T ss_pred eccCCcccce--Eeecc---------------CCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccc----
Confidence 5555432221 11111 111111111 3344554 6665555432 14566777777765
Q ss_pred ccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 389 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 389 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
+.+++|.|....|++|..|..+.+||+-........+.+|...|..+...+--+.|.+++.||.|.+
T Consensus 200 -----------~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~ 266 (404)
T KOG1409|consen 200 -----------VTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV 266 (404)
T ss_pred -----------eEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence 4599999999999999999999999998776666889999999999988888889999999999988
No 272
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.07 E-value=1.2e-06 Score=78.96 Aligned_cols=252 Identities=10% Similarity=0.063 Sum_probs=135.2
Q ss_pred cCCCceEEEe-e---------cCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 123 SANSALYLLS-T---------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 123 ~~~~~~l~s~-s---------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
++|++.++++ + .+..|.+||..+.+......+...|.... .......+++|||+.+.+
T Consensus 54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~--------~~~~~~~~ls~dgk~l~V---- 121 (352)
T TIGR02658 54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV--------GTYPWMTSLTPDNKTLLF---- 121 (352)
T ss_pred CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc--------cCccceEEECCCCCEEEE----
Confidence 4577777776 4 58899999999998776665543322111 112236689999998722
Q ss_pred CCCCCCcCCCCCCceeceeeccCCccccc---ceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeee
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVA---GCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNI 269 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~ 269 (513)
..-..+..+.+.|+...+...+. .|...+ ..+ +...++-+.||......+...++...
T Consensus 122 ------~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy-----------~t~-e~~~~~~~~Dg~~~~v~~d~~g~~~~- 182 (352)
T TIGR02658 122 ------YQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIF-----------PTA-NDTFFMHCRDGSLAKVGYGTKGNPKI- 182 (352)
T ss_pred ------ecCCCCCEEEEEECCCCcEEEEEeCCCCcEEE-----------Eec-CCccEEEeecCceEEEEecCCCceEE-
Confidence 12234677888888765542211 111111 111 12222223333333333332222110
Q ss_pred cccCccccccccCCe-EEEEEeC-CCCeEEEEEeCCCcEEEEEcCCccccccc-ceeeccccCCCCccccccccccEEEE
Q 010287 270 VDVKPANMEDLTEVI-TSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTH-SKLFEEQEAPGTRSFFTEIIASISDI 346 (513)
Q Consensus 270 ~~~~~~~~~~~~~~i-~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~i 346 (513)
... ..+.....++ ..-.|.+ ++ .++....+ |.|.+.|+......... ...+....... .-..+.+.-+
T Consensus 183 ~~~--~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~-----~wrP~g~q~i 253 (352)
T TIGR02658 183 KPT--EVFHPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKAD-----GWRPGGWQQV 253 (352)
T ss_pred eee--eeecCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeecccccccc-----ccCCCcceeE
Confidence 000 0000000000 0014456 66 55555555 99999997554322111 11111110000 0011344559
Q ss_pred EEeecCCEEEEEe---------C--CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC-EEEE
Q 010287 347 KFARNGRHILSRD---------Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVAT 414 (513)
Q Consensus 347 ~~sp~~~~l~~~~---------~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~ 414 (513)
+++|+++.++... + +.|.++|..+ .+.+..+..... +..++++||++ +|++
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~vG~~----------------~~~iavS~Dgkp~lyv 316 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIELGHE----------------IDSINVSQDAKPLLYA 316 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeCCCc----------------eeeEEECCCCCeEEEE
Confidence 9999998888732 1 5899999987 777776654332 24899999999 7776
Q ss_pred Ee-CCCcEEEEecCCCCc
Q 010287 415 GS-YSNLFRVFGCSEGSA 431 (513)
Q Consensus 415 ~~-~dg~i~vwd~~~~~~ 431 (513)
.. .++.|.++|..+++.
T Consensus 317 tn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 317 LSTGDKTLYIFDAETGKE 334 (352)
T ss_pred eCCCCCcEEEEECcCCeE
Confidence 65 678899999998743
No 273
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=1.6e-07 Score=85.45 Aligned_cols=291 Identities=13% Similarity=0.179 Sum_probs=158.3
Q ss_pred cccccccEEEEEEcCCCCEEEeecC-----------CCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCC
Q 010287 31 EVQEVDIISAIEFDKSGDHLATGDR-----------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH 99 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~g~~latg~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 99 (513)
...| ..|.-+.|||+.+||+|=+. ...++|||+.++... ..|..-
T Consensus 246 RF~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk-----------------------rsF~~~ 301 (698)
T KOG2314|consen 246 RFYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK-----------------------RSFPVI 301 (698)
T ss_pred hccC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchh-----------------------cceecc
Confidence 3446 47899999999999998652 246999999988753 111110
Q ss_pred CCcccccccccccccc-eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCce
Q 010287 100 EPEFDYLKSLEIEEKI-NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178 (513)
Q Consensus 100 ~~~~~~~~~~~~~~~i-~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (513)
.. ...+ --..| +.|+.++|.-.. .+|.||+...-.+.....+.... .....
T Consensus 302 ~~----------~~~~WP~frW--S~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~g---------------Ir~Fs 353 (698)
T KOG2314|consen 302 KS----------PYLKWPIFRW--SHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISG---------------IRDFS 353 (698)
T ss_pred CC----------CccccceEEe--ccCCceeEEecc-ceEEEEecCceeeecccccCCcc---------------ccCcc
Confidence 00 0112 23467 568778877655 55889987764433332222211 11345
Q ss_pred eccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-c---C--
Q 010287 179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D---D-- 252 (513)
Q Consensus 179 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~---d-- 252 (513)
|+|.+..+.. ++....-.+.. +.+..+..... +++. .-|.-.=..+.|-.+|.+|+.- + .
T Consensus 354 wsP~~~llAY----wtpe~~~~par---vtL~evPs~~~------iRt~-nlfnVsDckLhWQk~gdyLcvkvdR~tK~~ 419 (698)
T KOG2314|consen 354 WSPTSNLLAY----WTPETNNIPAR---VTLMEVPSKRE------IRTK-NLFNVSDCKLHWQKSGDYLCVKVDRHTKSK 419 (698)
T ss_pred cCCCcceEEE----EcccccCCcce---EEEEecCccce------eeec-cceeeeccEEEeccCCcEEEEEEEeecccc
Confidence 5665544311 11111111111 11111111111 1110 0111001135677788888763 1 1
Q ss_pred -----CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEE-eC--CCcEEEEEcCCcccccccceee
Q 010287 253 -----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS-SS--KGSIRLIDMRQSALCDTHSKLF 324 (513)
Q Consensus 253 -----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~--dg~i~vwd~~~~~~~~~~~~~~ 324 (513)
..+-|+.++.....+.. ......|...+|-|.| +.|++- +. ..++.+|-+.+.....+.++.+
T Consensus 420 ~~g~f~n~eIfrireKdIpve~--------velke~vi~FaWEP~g-dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~ 490 (698)
T KOG2314|consen 420 VKGQFSNLEIFRIREKDIPVEV--------VELKESVIAFAWEPHG-DKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL 490 (698)
T ss_pred ccceEeeEEEEEeeccCCCcee--------eecchheeeeeeccCC-CeEEEEEccccccceeEEEeecCCCchhhhhhh
Confidence 12445555543333322 2346778999999999 544443 33 3578888877532222223333
Q ss_pred ccccCCCCccccccccccEEEEEEeecCCEEEEEe---C-CeEEEEEccCCCCCee-eeecccccccccccccccCCccc
Q 010287 325 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD---Y-MTLKLWDINMDSGPVA-TFQVHEHLRPKLCDLYENDSIFD 399 (513)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~---~-~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 399 (513)
+. ...+.+.|+|.|++++.+. . |.+.++|+.. ..... ....|..
T Consensus 491 dk--------------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~-a~~k~~~~~eh~~---------------- 539 (698)
T KOG2314|consen 491 DK--------------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY-ADLKDTASPEHFA---------------- 539 (698)
T ss_pred cc--------------cccceEEEcCCCcEEEEEEecccccceEEEecch-hhhhhccCccccc----------------
Confidence 32 3478899999999999753 3 8999999874 11111 1111221
Q ss_pred eeeEEEeCCCCEEEEEeC------CCcEEEEecC
Q 010287 400 KFECCLSGDGGRVATGSY------SNLFRVFGCS 427 (513)
Q Consensus 400 v~~~~~s~~~~~l~~~~~------dg~i~vwd~~ 427 (513)
.+.+.|.|.|+|++|++. |.--++|++.
T Consensus 540 at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 540 ATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred cccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 247899999999999876 3445677766
No 274
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.03 E-value=2.9e-09 Score=99.67 Aligned_cols=288 Identities=15% Similarity=0.222 Sum_probs=181.4
Q ss_pred ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (513)
Q Consensus 34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (513)
-.+++.++..+|.|+-+|.++.-| +.+-|+...-. ..+....+.. -
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~-------------------ppr~l~h~tp--------------w 68 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT-------------------PPRWLHHITP--------------W 68 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCC-------------------CceeeeccCc--------------c
Confidence 457889999999999999999887 55666654321 1111121111 2
Q ss_pred cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (513)
Q Consensus 114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (513)
.|..+.|+|.+...+-++......-.+|++....-
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~--------------------------------------------- 103 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS--------------------------------------------- 103 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCc---------------------------------------------
Confidence 37778898876666766666666667888754321
Q ss_pred CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC-CEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
. .....+.+|...|+.+.|++.. ..++++ -|..+..||++.....+...
T Consensus 104 -----------~-----------------aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~- 154 (1081)
T KOG0309|consen 104 -----------N-----------------AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST- 154 (1081)
T ss_pred -----------c-----------------ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-
Confidence 1 1112357999999999999964 456667 59999999999877665432
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR- 350 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp- 350 (513)
..-......++|+...+..+| .+....|++||++.+... .. .+++|...|..+.|..
T Consensus 155 ------~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~p---l~------------s~K~~vs~vn~~~fnr~ 212 (1081)
T KOG0309|consen 155 ------SSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTP---LC------------SLKGHVSSVNSIDFNRF 212 (1081)
T ss_pred ------ecccccCceeeecccCcchhh-hccCCceEEEeccCCCcc---eE------------EecccceeeehHHHhhh
Confidence 222344678999987755554 567789999999987642 11 1345667888888876
Q ss_pred -cCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC--EEE---------EEeCC
Q 010287 351 -NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG--RVA---------TGSYS 418 (513)
Q Consensus 351 -~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~---------~~~~d 418 (513)
.++.+-+..|++|+.||.....+......... ++++.-++.|=|+ +++ ----+
T Consensus 213 ~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~---------------~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~ 277 (1081)
T KOG0309|consen 213 KYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN---------------FPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCE 277 (1081)
T ss_pred hhhhhcccCCCCceeeecccccccccceecccc---------------CcceeccccccCceeEeccccCCeeeeecccc
Confidence 23333345569999999875222111111111 1123334444322 221 11123
Q ss_pred CcEEEEecCCCCccceeecCCCCceeEEEEcCCCC----------ceeeecCCCeEEE
Q 010287 419 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP----------SRPLGSLSGVVRR 466 (513)
Q Consensus 419 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~l~~~~~d~~i~~ 466 (513)
+....|+..++...+.++.+|...|....|...+. .|++=+.|..+++
T Consensus 278 n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrl 335 (1081)
T KOG0309|consen 278 NSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRL 335 (1081)
T ss_pred chhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEe
Confidence 33445666666666788999999888777753322 5788899999998
No 275
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.02 E-value=4.5e-07 Score=81.77 Aligned_cols=121 Identities=9% Similarity=0.101 Sum_probs=77.3
Q ss_pred ecc-CCCEEEEEcCCeEEEEEcCCCcce----eeecccCccccccccCCeEEEEEeCCCCeEEEEEe---------CCCc
Q 010287 240 NNS-DGETFISADDLRINLWNLEISNQS----FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---------SKGS 305 (513)
Q Consensus 240 ~~~-~~~~l~s~~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---------~dg~ 305 (513)
|.+ +++++..+.+|+|.+.|+...... +.++......-......+.-++++|++.++++... ..+.
T Consensus 201 ~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~ 280 (352)
T TIGR02658 201 YSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF 280 (352)
T ss_pred eEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE
Confidence 455 888888886699999997543221 11111100000112334445999999844444331 2258
Q ss_pred EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC-EEEEEe--CCeEEEEEccCCCCCeeee
Q 010287 306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATF 378 (513)
Q Consensus 306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~-~l~~~~--~~~v~iwd~~~~~~~~~~~ 378 (513)
|.++|..+++. +..+... ..+..++++||++ +|++.+ .+.|.++|..+ ++.+..+
T Consensus 281 V~ViD~~t~kv----i~~i~vG-------------~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t-~k~i~~i 338 (352)
T TIGR02658 281 LFVVDAKTGKR----LRKIELG-------------HEIDSINVSQDAKPLLYALSTGDKTLYIFDAET-GKELSSV 338 (352)
T ss_pred EEEEECCCCeE----EEEEeCC-------------CceeeEEECCCCCeEEEEeCCCCCcEEEEECcC-CeEEeee
Confidence 99999988876 3333322 3688999999999 777655 38899999986 7777766
No 276
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=5e-09 Score=94.93 Aligned_cols=244 Identities=17% Similarity=0.155 Sum_probs=138.2
Q ss_pred ccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEE
Q 010287 229 HAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 308 (513)
Q Consensus 229 ~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v 308 (513)
..|+.+|.++.|-.+.++++++ ||-|.+||.-.+..+.++.+- .-.+-.+.|.|+.-- +..-+++.++...+|++
T Consensus 781 ~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPFigr~Laq~~da---pk~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl 855 (1034)
T KOG4190|consen 781 QAHKKPIHDIGFLADLRSIASC-DGGIHLWDPFIGRLLAQMEDA---PKEGAGGNIKCLENV-DRHILIAGCSAESTVKL 855 (1034)
T ss_pred hhccCcccceeeeeccceeeec-cCcceeecccccchhHhhhcC---cccCCCceeEecccC-cchheeeeccchhhhee
Confidence 6899999999999998888876 466999998766654433211 112223344444321 22234555578999999
Q ss_pred EEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccc
Q 010287 309 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPK 387 (513)
Q Consensus 309 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~ 387 (513)
+|.|..... ..++.-+.+ +..+-+++++..+.|.+++++-. |.|.+.|.++ ++.+..++.-+..
T Consensus 856 ~DaRsce~~----~E~kVcna~-------~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~-G~vINswrpmecd--- 920 (1034)
T KOG4190|consen 856 FDARSCEWT----CELKVCNAP-------GPNALTRAIAVADKGNKLAAALSNGCIAILDARN-GKVINSWRPMECD--- 920 (1034)
T ss_pred eecccccce----eeEEeccCC-------CCchheeEEEeccCcchhhHHhcCCcEEEEecCC-CceeccCCcccch---
Confidence 999987652 223322211 12256899999999999998754 9999999997 7766655433221
Q ss_pred cccccccCCccceeeEEEeCCCCEEEEEeCCCcEEE-EecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 388 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV-FGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 388 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v-wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
...++ .|..+.|+....|.++.+ |....+.. ....+....|.. ....-|..|++......+.+
T Consensus 921 ------------llqla-apsdq~L~~saldHslaVnWhaldgim-h~q~kpppepah--flqsvgpSLV~a~~Gn~lgV 984 (1034)
T KOG4190|consen 921 ------------LLQLA-APSDQALAQSALDHSLAVNWHALDGIM-HLQDKPPPEPAH--FLQSVGPSLVTAQNGNILGV 984 (1034)
T ss_pred ------------hhhhc-CchhHHHHhhcccceeEeeehhcCCee-eeccCCCCcchh--hhhccCceeEEeccCcEEEE
Confidence 00122 355567777778888888 87765522 222332222211 11223445555554445555
Q ss_pred e-cCCCCCcccc--CCccccccCCeeEEEEeCCCCEEEEEc-CCcE
Q 010287 467 V-KGADNSALDA--NGNAFDFSMKLLHLAWHPSENSIACAA-SNSL 508 (513)
Q Consensus 467 ~-~~~~~~~~~~--~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~ 508 (513)
+ +..+...... ....-++.+..++++--|-..-+..|. .+.+
T Consensus 985 Yad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~I 1030 (1034)
T KOG4190|consen 985 YADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAI 1030 (1034)
T ss_pred EecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCce
Confidence 1 1111110000 111123456677787777654444443 4443
No 277
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=1.7e-07 Score=88.70 Aligned_cols=413 Identities=11% Similarity=0.057 Sum_probs=195.8
Q ss_pred ccccccEEEEEEcCC------------CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCC
Q 010287 32 VQEVDIISAIEFDKS------------GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH 99 (513)
Q Consensus 32 ~~h~~~V~~v~~sp~------------g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 99 (513)
..|...|+.+.|.|- .-+||+++..|+|.+||......+ ..++.|
T Consensus 52 e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~-----------------------~~l~~~ 108 (1062)
T KOG1912|consen 52 ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVI-----------------------NWLSHS 108 (1062)
T ss_pred ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhh-----------------------hhhcCC
Confidence 357899999999873 136899999999999998765532 345556
Q ss_pred CCcccccccccccccceeEEEeecCCCc--eEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCc
Q 010287 100 EPEFDYLKSLEIEEKINKIRWCQSANSA--LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (513)
Q Consensus 100 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~--~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (513)
. ++|..++|.|..+.. .|++-....++.+|+..+|+...........-..+.... .....+
T Consensus 109 ~------------~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DP-----fd~rh~ 171 (1062)
T KOG1912|consen 109 N------------DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDP-----FDSRHF 171 (1062)
T ss_pred C------------cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCC-----CCcceE
Confidence 6 889999999865543 455557788999999999876554433221100000000 000011
Q ss_pred eeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEe-eccccC---------CeEEEEeccCCCE-
Q 010287 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIY-AHAHDY---------HINSISNNSDGET- 246 (513)
Q Consensus 178 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~h~~---------~v~~~~~~~~~~~- 246 (513)
.++-.+..+-.. ++.-....+...+.+.+...........+... ...+.. -...++|+|.-+.
T Consensus 172 ~~l~s~g~vl~~------~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 172 CVLGSKGFVLSC------KDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred EEEccCceEEEE------eccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 111111111000 00000111112222222111000000000000 000000 0124567776444
Q ss_pred EEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCC-eEEEEEeCCCcEEEEEcCCcccccc-cceee
Q 010287 247 FISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDT-HSKLF 324 (513)
Q Consensus 247 l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~ 324 (513)
++..--..+.++|++-......+ .++ .+.+.-+.+-|+.. ..+++.-.||.+.+|-.+......+ ....+
T Consensus 246 lfi~~prellv~dle~~~~l~vv------pie--r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l 317 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYECCLAVV------PIE--RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASL 317 (1062)
T ss_pred EEEEeccceEEEcchhhceeEEE------Eec--cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhh
Confidence 44446778999999855443322 222 33455566666642 4678888999999997544211000 00000
Q ss_pred cc--ccCCCCccccccccccEEEEEEeecCCE-EEE-EeCCeEEEEEccCCCCCeeeeecc-------------ccc--c
Q 010287 325 EE--QEAPGTRSFFTEIIASISDIKFARNGRH-ILS-RDYMTLKLWDINMDSGPVATFQVH-------------EHL--R 385 (513)
Q Consensus 325 ~~--~~~~~~~~~~~~~~~~v~~i~~sp~~~~-l~~-~~~~~v~iwd~~~~~~~~~~~~~~-------------~~~--~ 385 (513)
.. .+.-........ -.+......|..+- ++. -++|.+.+|.+.+ ++.-...... ... .
T Consensus 318 ~~dl~~Q~~~vr~m~~--~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~-~ri~~~~~s~~iel~~pf~f~~~~~~v~k 394 (1062)
T KOG1912|consen 318 SMDLGEQVHVVRPMEE--FRPVIGASCPSTPSALAVLYSSGDSTFWQLSN-GRIHLDYRSSSIELVLPFDFNLSTKLVGK 394 (1062)
T ss_pred ccccccceEEEeechh--cccceeecCCCChhhhhhhhhcchhHHHhhhc-CCcCcccccccccccccccccCceeehhh
Confidence 00 000000000000 01111222343222 221 2346777888774 2211111000 000 0
Q ss_pred cccccccccCC-cccee-----------eEEEeCCC-------CEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEE
Q 010287 386 PKLCDLYENDS-IFDKF-----------ECCLSGDG-------GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQ 446 (513)
Q Consensus 386 ~~~~~~~~~~~-~~~v~-----------~~~~s~~~-------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 446 (513)
..+.++...+. ..+.+ ...-.|-+ ..++.|+..|+|.++|+.++ .....+..|...|..+
T Consensus 395 ~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~-~v~~~fsvht~~Vkgl 473 (1062)
T KOG1912|consen 395 TSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN-AVAASFSVHTSLVKGL 473 (1062)
T ss_pred ccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecch-hhhhhhcccccceeee
Confidence 00000000000 00000 11111222 26789999999999999987 5557888999999999
Q ss_pred EEcCCCCceeeecC-----CCeE----EE--ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc
Q 010287 447 VQTPSRPSRPLGSL-----SGVV----RR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 504 (513)
Q Consensus 447 ~~~~~~~~l~~~~~-----d~~i----~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 504 (513)
-|.....++-.+.. .|.+ .+ ...+... .+.+....-..+|+.+.-|..+++||..-
T Consensus 474 eW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk--~fR~l~~~despI~~irvS~~~~yLai~F 540 (1062)
T KOG1912|consen 474 EWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSK--RFRGLQKPDESPIRAIRVSSSGRYLAILF 540 (1062)
T ss_pred eeccceeEEEeeeccccccccceeeeEEEEEccccccc--ccccCCCCCcCcceeeeecccCceEEEEe
Confidence 88766555432211 1111 11 1111111 12222233468999999999999999764
No 278
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.01 E-value=3.4e-09 Score=99.23 Aligned_cols=186 Identities=17% Similarity=0.229 Sum_probs=128.4
Q ss_pred eEEEEeccC--CC-EEEEEcCCeEEEEEcCCCc-ceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287 235 INSISNNSD--GE-TFISADDLRINLWNLEISN-QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 310 (513)
Q Consensus 235 v~~~~~~~~--~~-~l~s~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd 310 (513)
|-...|++. .. .+++.+...-.+|++.... +.+++ .+-+|...|+.+.|+|..+..+++++.|-.+..||
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef------~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd 143 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEF------VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWD 143 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEE------EEecCccceeccccCCCCCcceeeccccccceeee
Confidence 334455553 22 3444355666789886443 22332 45789999999999999999999999999999999
Q ss_pred cCCcccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccc
Q 010287 311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLC 389 (513)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
+++... +++.+..-. .....+.|+- ++..+++.....|.+||.+.++.++..+++|...+
T Consensus 144 ~rSp~~---p~ys~~~w~------------s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~v---- 204 (1081)
T KOG0309|consen 144 MRSPHR---PFYSTSSWR------------SAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSV---- 204 (1081)
T ss_pred ccCCCc---ceeeeeccc------------ccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceee----
Confidence 998543 233333211 3456788986 56666666668999999999888999988865542
Q ss_pred cccccCCccceeeEEEeCC-CCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCcee
Q 010287 390 DLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 456 (513)
Q Consensus 390 ~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 456 (513)
..++|..- ...+++.+.||+|++||.+..............++..-.+.|-|.-..
T Consensus 205 -----------n~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 205 -----------NSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred -----------ehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE
Confidence 24555431 235778899999999998866444444455667788878887766443
No 279
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.99 E-value=3.8e-07 Score=82.31 Aligned_cols=326 Identities=12% Similarity=0.077 Sum_probs=185.5
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
-++..++|+| .|.+|++....+ |.+|.-........ +... ...-+.++|.+++|......
T Consensus 33 ~p~~~~~~SP--~G~~l~~~~~~~-V~~~~g~~~~~l~~--~~~~---------------~V~~~~fSP~~kYL~tw~~~ 92 (561)
T COG5354 33 WPVAYVSESP--LGTYLFSEHAAG-VECWGGPSKAKLVR--FRHP---------------DVKYLDFSPNEKYLVTWSRE 92 (561)
T ss_pred cchhheeecC--cchheehhhccc-eEEccccchhheee--eecC---------------CceecccCcccceeeeeccC
Confidence 5688899955 787888876655 88898766542111 1111 11145688888887654322
Q ss_pred CC--CCCCcCC-CCCCceeceeeccCCcccccceeeEeeccccCCeE-EEEeccCCCEEEEEcCCeEEEEEcCCCcceee
Q 010287 193 AS--NDSSFPP-GGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHIN-SISNNSDGETFISADDLRINLWNLEISNQSFN 268 (513)
Q Consensus 193 ~~--~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~ 268 (513)
.. .+...++ ..++.+.+||...+........+. ...-.+ -+.|+.+.++.+---...+.++++ +......
T Consensus 93 pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~-----q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~ 166 (561)
T COG5354 93 PIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGIS-----QPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEH 166 (561)
T ss_pred CccChhhccCCccccCceeEEeccCceeEeeccccC-----CcccccceeeeeecchhhhhhccCeEEEEec-CCccccC
Confidence 22 2333333 233478999987766533221111 011122 577888887776545677999997 3332210
Q ss_pred ecccCccccccc-cCCeEEEEEeCCCC-eEEEE-----EeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccc
Q 010287 269 IVDVKPANMEDL-TEVITSAEFHPTHC-NMLAY-----SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 341 (513)
Q Consensus 269 ~~~~~~~~~~~~-~~~i~~~~~~~~~~-~~l~~-----~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (513)
.+... ...|....|+|.+. ..|+. ...++.+++|.+..+..... ...++ .
T Consensus 167 -------p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~t-k~lfk---------------~ 223 (561)
T COG5354 167 -------PFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVT-KNLFK---------------V 223 (561)
T ss_pred -------chhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeee-eeeEe---------------e
Confidence 11111 35678888888631 22332 34567888888875443211 11111 1
Q ss_pred cEEEEEEeecCCEEEEE------------eCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC
Q 010287 342 SISDIKFARNGRHILSR------------DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 409 (513)
Q Consensus 342 ~v~~i~~sp~~~~l~~~------------~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 409 (513)
.=..+.|.+.|.+|+.- ++..++++++.. .-+.....-.+. |...+|.|.+
T Consensus 224 ~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~~~~~p---------------Vhdf~W~p~S 286 (561)
T COG5354 224 SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIPVEKDLKDP---------------VHDFTWEPLS 286 (561)
T ss_pred cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc--cccceecccccc---------------ceeeeecccC
Confidence 22457888889887741 115677777762 222222111222 5589999998
Q ss_pred CEEEEE--eCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCC---CeEEEecCCCCCccccCCccccc
Q 010287 410 GRVATG--SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS---GVVRRVKGADNSALDANGNAFDF 484 (513)
Q Consensus 410 ~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~~~~~~~~~~~~~~~~~~~ 484 (513)
+.+++. -.+-.+.++|++.. .........-+.+.|+|.+++++.++.| |.+.+ +.+.+.......+ -
T Consensus 287 ~~F~vi~g~~pa~~s~~~lr~N----l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i---~~~~~rf~~~~~~-~ 358 (561)
T COG5354 287 SRFAVISGYMPASVSVFDLRGN----LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEI---FDPAGRFKVAGAF-N 358 (561)
T ss_pred CceeEEecccccceeecccccc----eEEecCCcccccccccCcccEEEEecCCccccceEE---eccCCceEEEEEe-e
Confidence 876644 46788999998854 2333344455678999999999987766 55555 2222100000000 0
Q ss_pred cCCeeEEEEeCCCCEEEEEc-------CCcEEEEe
Q 010287 485 SMKLLHLAWHPSENSIACAA-------SNSLYMYY 512 (513)
Q Consensus 485 ~~~i~~~~~sp~~~~la~~~-------~~~~~i~~ 512 (513)
.....-+.|+||+.++-++. |+++.||.
T Consensus 359 ~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 359 GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred cCCceEeeccCCceEEEecCCCcccccCcceEEEE
Confidence 12345568999999977553 67777775
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.99 E-value=7.8e-07 Score=93.39 Aligned_cols=189 Identities=13% Similarity=0.129 Sum_probs=106.8
Q ss_pred eEEEEeccC-CCEEEEE-cCCeEEEEEcCCCcceeeecccCccccc------cccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287 235 INSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANME------DLTEVITSAEFHPTHCNMLAYSSSKGSI 306 (513)
Q Consensus 235 v~~~~~~~~-~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~l~~~~~dg~i 306 (513)
...++++|+ +..+++. .++.|++||..++....-.-+....... ..-.....++++|++..++++-+.++.|
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I 764 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI 764 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence 457899995 4455554 6899999998754321100000000001 1123457899999984477777778999
Q ss_pred EEEEcCCcccccc---------cceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCee
Q 010287 307 RLIDMRQSALCDT---------HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVA 376 (513)
Q Consensus 307 ~vwd~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~ 376 (513)
++||+.++..... ....+........ ...-.....++++++|.++++-.. +.|++||..+ +. +.
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~----~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g~-v~ 838 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS----EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-KR-VT 838 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchh----hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-Ce-EE
Confidence 9999987542100 0000000000000 001123468999999987777555 9999999874 33 33
Q ss_pred eeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287 377 TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 430 (513)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 430 (513)
.+.+...... ...............++++++|+++++-+.++.|++||+.++.
T Consensus 839 tiaG~G~~G~-~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 839 TLAGTGKAGF-KDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEeccCCcCC-CCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 3322111000 0000000111112378999999988888899999999998764
No 281
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.96 E-value=1.3e-06 Score=82.49 Aligned_cols=182 Identities=9% Similarity=0.079 Sum_probs=95.1
Q ss_pred EEEEE-cCCeEEEEEcCCCcceeeecccCc-cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccccee
Q 010287 246 TFISA-DDLRINLWNLEISNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 323 (513)
Q Consensus 246 ~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 323 (513)
.++.+ .++.|..||.++++...+.....+ ..+... .+.... + ..++.+..++.+..+|+++++...+..
T Consensus 147 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~----~sp~~~-~--~~v~~~~~~g~v~ald~~tG~~~W~~~-- 217 (377)
T TIGR03300 147 LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS----ASPVIA-D--GGVLVGFAGGKLVALDLQTGQPLWEQR-- 217 (377)
T ss_pred EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC----CCCEEE-C--CEEEEECCCCEEEEEEccCCCEeeeec--
Confidence 44444 789999999988776554311000 000000 111122 2 356777888999999999887643211
Q ss_pred eccccCCCCccccccccccEEEEEEee--cCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccce
Q 010287 324 FEEQEAPGTRSFFTEIIASISDIKFAR--NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 400 (513)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~v~~i~~sp--~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 400 (513)
+........ . ..+..+.-+| .+..++.++ ++.+..||..+ ++.+-.......
T Consensus 218 ~~~~~g~~~---~----~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t-G~~~W~~~~~~~----------------- 272 (377)
T TIGR03300 218 VALPKGRTE---L----ERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS-GRVLWKRDASSY----------------- 272 (377)
T ss_pred cccCCCCCc---h----hhhhccCCccEEECCEEEEEEcCCEEEEEECCC-CcEEEeeccCCc-----------------
Confidence 100000000 0 0000011111 234555544 59999999986 665543331110
Q ss_pred eeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecC-CCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 401 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 401 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.... .++..++.++.||.++.+|..+++.+ -..+. .......... .+..+++++.+|.+.+
T Consensus 273 ~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~-W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~ 334 (377)
T TIGR03300 273 QGPA--VDDNRLYVTDADGVVVALDRRSGSEL-WKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHW 334 (377)
T ss_pred cCce--EeCCEEEEECCCCeEEEEECCCCcEE-EccccccCCccccCEE--ECCEEEEEeCCCEEEE
Confidence 0122 24567888889999999999888432 22211 1111112122 3568888889999888
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=9.2e-09 Score=93.26 Aligned_cols=295 Identities=15% Similarity=0.183 Sum_probs=173.4
Q ss_pred cccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287 29 GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (513)
Q Consensus 29 ~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (513)
-.+.+|+..|..++--.+.+-+++++.|.+|++|.++..... .....+..+++.|+
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~----------------~~tsaCQfTY~aHk-------- 784 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE----------------IGTSACQFTYQAHK-------- 784 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc----------------cccceeeeEhhhcc--------
Confidence 357899999999887667788999999999999998654321 00112445678888
Q ss_pred ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (513)
Q Consensus 109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 188 (513)
.+|+++-|.. +.+ ..++.|+.|.+||.--+.......-. +
T Consensus 785 ----k~i~~igfL~--~lr--~i~ScD~giHlWDPFigr~Laq~~da--p------------------------------ 824 (1034)
T KOG4190|consen 785 ----KPIHDIGFLA--DLR--SIASCDGGIHLWDPFIGRLLAQMEDA--P------------------------------ 824 (1034)
T ss_pred ----Ccccceeeee--ccc--eeeeccCcceeecccccchhHhhhcC--c------------------------------
Confidence 8899999964 422 44567899999998766532211100 0
Q ss_pred ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcce
Q 010287 189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQS 266 (513)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~ 266 (513)
..+-.+.|.|+. +-+...++.+ ...+|+++|.+..+-.
T Consensus 825 ---------------------------------------k~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~ 864 (1034)
T KOG4190|consen 825 ---------------------------------------KEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWT 864 (1034)
T ss_pred ---------------------------------------ccCCCceeEecc-cCcchheeeeccchhhheeeecccccce
Confidence 001112233331 1133444444 4899999998865533
Q ss_pred eeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEE
Q 010287 267 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 346 (513)
Q Consensus 267 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 346 (513)
.++. -..-.+-...+++++..+.| +.++.+-.+|.|.+.|.|+|... ..|..-+ -....+
T Consensus 865 ~E~k---Vcna~~Pna~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~vI----Nswrpme------------cdllql 924 (1034)
T KOG4190|consen 865 CELK---VCNAPGPNALTRAIAVADKG-NKLAAALSNGCIAILDARNGKVI----NSWRPME------------CDLLQL 924 (1034)
T ss_pred eeEE---eccCCCCchheeEEEeccCc-chhhHHhcCCcEEEEecCCCcee----ccCCccc------------chhhhh
Confidence 2211 01223445678899999999 99999999999999999999863 2222111 011111
Q ss_pred EEeecCCEEEE-EeCCeEEE-EEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEE
Q 010287 347 KFARNGRHILS-RDYMTLKL-WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 424 (513)
Q Consensus 347 ~~sp~~~~l~~-~~~~~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 424 (513)
+ .|..+.|+. +.+.++.+ |.... +......+....+. --.-.-|.-|+++...+.+.+|
T Consensus 925 a-apsdq~L~~saldHslaVnWhald-gimh~q~kpppepa-----------------hflqsvgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 925 A-APSDQALAQSALDHSLAVNWHALD-GIMHLQDKPPPEPA-----------------HFLQSVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred c-CchhHHHHhhcccceeEeeehhcC-CeeeeccCCCCcch-----------------hhhhccCceeEEeccCcEEEEE
Confidence 1 245556664 44566776 76543 33222222222110 0011234557777777777777
Q ss_pred ecCCCCccc---eee--cCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 425 GCSEGSAES---TTL--EASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 425 d~~~~~~~~---~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.-....... ..+ ....+..++++.-|-..-++.|+..|.|.+
T Consensus 986 ad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 986 ADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred ecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 532211111 111 122345567788888888888888888876
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.91 E-value=3.1e-06 Score=89.05 Aligned_cols=223 Identities=10% Similarity=0.101 Sum_probs=130.4
Q ss_pred CeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeeccc--Ccccccc-------ccCCeEEEEEeCCCCeEEEEEeC
Q 010287 234 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDV--KPANMED-------LTEVITSAEFHPTHCNMLAYSSS 302 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~-------~~~~i~~~~~~~~~~~~l~~~~~ 302 (513)
....++++++++.|+.+ ..+.|+++|+.++. ...+... ......+ .-.....++++|++..++++.+.
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 35789999988877776 46889999987543 2111100 0000000 01234689999954478888888
Q ss_pred CCcEEEEEcCCcccccccceeeccccCCCCc---cccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeee
Q 010287 303 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTR---SFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVAT 377 (513)
Q Consensus 303 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~ 377 (513)
++.|++||..++.. ..+.+....... ......-.....|+++|++..|++++ + +.|++||+.+ +.. ..
T Consensus 704 ~~~I~v~d~~~g~v-----~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t-g~~-~~ 776 (1057)
T PLN02919 704 QHQIWEYNISDGVT-----RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT-GGS-RL 776 (1057)
T ss_pred CCeEEEEECCCCeE-----EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC-CcE-EE
Confidence 99999999877643 222111000000 00001113467799999998666554 3 8999999885 332 11
Q ss_pred eecccc-ccccccccccc------CCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeec-------------
Q 010287 378 FQVHEH-LRPKLCDLYEN------DSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE------------- 437 (513)
Q Consensus 378 ~~~~~~-~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------------- 437 (513)
+.+... .......+... .....-..++++++|+++++-+.++.|++||..++... ++.
T Consensus 777 ~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~--tiaG~G~~G~~dG~~~ 854 (1057)
T PLN02919 777 LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT--TLAGTGKAGFKDGKAL 854 (1057)
T ss_pred EEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE--EEeccCCcCCCCCccc
Confidence 111000 00000000000 00011137899999998888889999999999865221 221
Q ss_pred -CCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 438 -ASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 438 -~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
+.......++++++|+.+++.+.++.|++
T Consensus 855 ~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 855 KAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred ccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 12234568899999999898889999988
No 284
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.88 E-value=5.7e-08 Score=84.89 Aligned_cols=80 Identities=16% Similarity=0.195 Sum_probs=66.3
Q ss_pred ccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEE
Q 010287 229 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 307 (513)
Q Consensus 229 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 307 (513)
.+|-..++.++|+||++.|+++ .|..|++-........ + .-.-+|...|..++.-++ +.|++++.|++++
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I-e------sfclGH~eFVS~isl~~~--~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI-E------SFCLGHKEFVSTISLTDN--YLLLSGSGDKTLR 218 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccch-h------hhccccHhheeeeeeccC--ceeeecCCCCcEE
Confidence 5888889999999999999999 5999998876532211 1 123679999999999987 4699999999999
Q ss_pred EEEcCCcccc
Q 010287 308 LIDMRQSALC 317 (513)
Q Consensus 308 vwd~~~~~~~ 317 (513)
+||+++++..
T Consensus 219 ~Wd~~sgk~L 228 (390)
T KOG3914|consen 219 LWDITSGKLL 228 (390)
T ss_pred EEecccCCcc
Confidence 9999999874
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=4.5e-07 Score=85.47 Aligned_cols=179 Identities=11% Similarity=0.043 Sum_probs=108.4
Q ss_pred CeEEEEeccCCCE-EEE-E-c--CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC--CcE
Q 010287 234 HINSISNNSDGET-FIS-A-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSI 306 (513)
Q Consensus 234 ~v~~~~~~~~~~~-l~s-~-~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--g~i 306 (513)
......|+|+|+. ++. . . +..|.++|+.+++.. .+....+......|+||+..++++.+.+ ..|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~---------~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 259 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE---------KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE---------EEecCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence 5678999999984 553 3 2 467889999866532 1222344456788999995555555555 457
Q ss_pred EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC----CeEEEEEccCCCCCeeeeeccc
Q 010287 307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQVHE 382 (513)
Q Consensus 307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~----~~v~iwd~~~~~~~~~~~~~~~ 382 (513)
.++|+.++.. +.+... ........|+|||+.|+-.++ ..|.+.|+.. ++. +.+....
T Consensus 260 y~~dl~~g~~-----~~LT~~------------~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~-~rlt~~g 320 (419)
T PRK04043 260 YLYDTNTKTL-----TQITNY------------PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSV-EQVVFHG 320 (419)
T ss_pred EEEECCCCcE-----EEcccC------------CCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCe-EeCccCC
Confidence 7778766543 111111 111234579999998886543 3677777764 333 2222111
Q ss_pred ccccccccccccCCccceeeEEEeCCCCEEEEEeCC---------CcEEEEecCCCCccceeecCCCCceeEEEEcCCCC
Q 010287 383 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 453 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 453 (513)
.. ...|+|||++|+..+.. ..|.+.|+.++... .+... .......|+|+|+
T Consensus 321 ~~-----------------~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~--~LT~~-~~~~~p~~SPDG~ 380 (419)
T PRK04043 321 KN-----------------NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR--RLTAN-GVNQFPRFSSDGG 380 (419)
T ss_pred Cc-----------------CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE--ECCCC-CCcCCeEECCCCC
Confidence 11 24799999998865543 36888898877432 22222 1233578999999
Q ss_pred ceeeecC
Q 010287 454 SRPLGSL 460 (513)
Q Consensus 454 ~l~~~~~ 460 (513)
.++....
T Consensus 381 ~I~f~~~ 387 (419)
T PRK04043 381 SIMFIKY 387 (419)
T ss_pred EEEEEEc
Confidence 8876653
No 286
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.86 E-value=1.6e-06 Score=72.93 Aligned_cols=182 Identities=17% Similarity=0.175 Sum_probs=109.3
Q ss_pred CeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccc-c-ccccCCeEEEEEeCCC-----CeEEEEEeCCCc
Q 010287 234 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN-M-EDLTEVITSAEFHPTH-----CNMLAYSSSKGS 305 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~~-----~~~l~~~~~dg~ 305 (513)
.-+.++|+||+..|+.+ +.|+|+++|+.. ..++.+ .|.. . ..-...|..+.|.+.. ...|+.-..+|.
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I---~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~ 120 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI---PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ 120 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc---CcccccCCccccceeeeEeeccccccccceeEEEEeccce
Confidence 35689999999999999 799999999983 333322 2211 1 1223566677665432 135666778888
Q ss_pred EEEEEcCCccc-ccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C--C---------eEEEEEccCCC
Q 010287 306 IRLIDMRQSAL-CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y--M---------TLKLWDINMDS 372 (513)
Q Consensus 306 i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~--~---------~v~iwd~~~~~ 372 (513)
++=|-+..+.. .-+....+.. ...+...|.++.++|..++|+.|+ . . -+..|.+-. +
T Consensus 121 L~Sy~vs~gt~q~y~e~hsfsf---------~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~-~ 190 (282)
T PF15492_consen 121 LRSYLVSVGTNQGYQENHSFSF---------SSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILS-D 190 (282)
T ss_pred eeeEEEEcccCCcceeeEEEEe---------cccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcC-C
Confidence 88777643211 0011112211 122346899999999988888753 1 1 367787764 4
Q ss_pred CCeeee-eccccccc------c---ccc--cc--ccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 373 GPVATF-QVHEHLRP------K---LCD--LY--ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 373 ~~~~~~-~~~~~~~~------~---~~~--~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
.+.... ...+.... . +.. ++ ..+....|+.|..||||+.||+...+|.|.+|++.+-
T Consensus 191 ~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 191 SPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred CCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 333221 11111000 0 000 11 1122234679999999999999999999999999865
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=1.5e-06 Score=82.07 Aligned_cols=177 Identities=9% Similarity=0.029 Sum_probs=105.2
Q ss_pred CeEEEEEeCCCCeEEEEEeCC---CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEE-
Q 010287 283 VITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR- 358 (513)
Q Consensus 283 ~i~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~- 358 (513)
......|+|++...++..+.+ ..|.++|+.+++.. .+.. ..+......|+|||+.|+..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-----~lt~------------~~g~~~~~~~SPDG~~la~~~ 251 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-----KIAS------------SQGMLVVSDVSKDGSKLLLTM 251 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-----EEec------------CCCcEEeeEECCCCCEEEEEE
Confidence 677899999994345544443 46888898877541 1111 11345667899999877753
Q ss_pred e-C--CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC-CC--cEEEEecCCCCcc
Q 010287 359 D-Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN--LFRVFGCSEGSAE 432 (513)
Q Consensus 359 ~-~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~vwd~~~~~~~ 432 (513)
+ + ..|.++|+.. +. ...+..+... .....|+|||+.|+..+. .+ .|++.|+.++...
T Consensus 252 ~~~g~~~Iy~~dl~~-g~-~~~LT~~~~~---------------d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~ 314 (419)
T PRK04043 252 APKGQPDIYLYDTNT-KT-LTQITNYPGI---------------DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE 314 (419)
T ss_pred ccCCCcEEEEEECCC-Cc-EEEcccCCCc---------------cCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 2 2 6788888764 33 4444333221 014679999998776553 33 5778888876443
Q ss_pred ceeecCCCCceeEEEEcCCCCceeeecCC-------C--eEEEe--cCCCCCccccCCccccccCCeeEEEEeCCCCEEE
Q 010287 433 STTLEASKNPMRRQVQTPSRPSRPLGSLS-------G--VVRRV--KGADNSALDANGNAFDFSMKLLHLAWHPSENSIA 501 (513)
Q Consensus 433 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~--~i~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la 501 (513)
..+..+.. ...|+|+|++|+..... + .|.++ .+.... .+.. ........|+|||+.|+
T Consensus 315 rlt~~g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~--~LT~-----~~~~~~p~~SPDG~~I~ 383 (419)
T PRK04043 315 QVVFHGKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR--RLTA-----NGVNQFPRFSSDGGSIM 383 (419)
T ss_pred eCccCCCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE--ECCC-----CCCcCCeEECCCCCEEE
Confidence 33332221 24899999998876543 2 34442 222221 1111 12334689999999988
Q ss_pred EEc
Q 010287 502 CAA 504 (513)
Q Consensus 502 ~~~ 504 (513)
..+
T Consensus 384 f~~ 386 (419)
T PRK04043 384 FIK 386 (419)
T ss_pred EEE
Confidence 554
No 288
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.82 E-value=8.4e-07 Score=79.40 Aligned_cols=169 Identities=9% Similarity=0.064 Sum_probs=120.1
Q ss_pred CCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC-cEEEEEcCCcccccccc
Q 010287 243 DGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG-SIRLIDMRQSALCDTHS 321 (513)
Q Consensus 243 ~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~ 321 (513)
+|.+++..+.|...+.+...+- .++ .++...|.-..+..+. +-++.|..|| .+-++|.++++.
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~-~iq---------v~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~----- 394 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGY-SIQ---------VGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEV----- 394 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCe-eEE---------cCCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceE-----
Confidence 5788888788888888876433 222 3466778888888777 6788999999 999999998773
Q ss_pred eeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccce
Q 010287 322 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 400 (513)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 400 (513)
+.++.. -+.|.++..+|+|++++++.+ ..+.+.|+.+ +.....-+..... |
T Consensus 395 kr~e~~------------lg~I~av~vs~dGK~~vvaNdr~el~vididn-gnv~~idkS~~~l---------------I 446 (668)
T COG4946 395 KRIEKD------------LGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-GNVRLIDKSEYGL---------------I 446 (668)
T ss_pred EEeeCC------------ccceEEEEEcCCCcEEEEEcCceEEEEEEecC-CCeeEecccccce---------------e
Confidence 222222 267999999999999999988 9999999986 5443322222222 5
Q ss_pred eeEEEeCCCCEEEEEeCCC----cEEEEecCCCCccceeecCCCCceeEEEEcCCCCceee
Q 010287 401 FECCLSGDGGRVATGSYSN----LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 457 (513)
Q Consensus 401 ~~~~~s~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 457 (513)
+...|+|+++++|-+--+| .|++||+..++ .. .......--.+-+|.|++++|..
T Consensus 447 tdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K-iy-~vTT~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 447 TDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK-IY-DVTTPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred EEEEEcCCceeEEEecCcceeeeeEEEEecCCCe-EE-EecCCcccccCcccCCCCcEEEE
Confidence 6899999999999776554 68999999763 32 22222223346678888887643
No 289
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=3.4e-07 Score=81.30 Aligned_cols=325 Identities=14% Similarity=0.158 Sum_probs=194.3
Q ss_pred cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccc
Q 010287 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (513)
Q Consensus 33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (513)
-|.+.|+.+.-+ -.+++.+++.||.++.|.-.... -..+.+.+..|-
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~is--------------------GvEfVKhFraHL------------ 53 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRIS--------------------GVEFVKHFRAHL------------ 53 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCcc--------------------ceeehhhhHHHH------------
Confidence 478888887644 35799999999999999843211 123556677777
Q ss_pred ccceeEEEeecCCCceEEEeec-CCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccC
Q 010287 113 EKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 191 (513)
..|.+++. +-++..+.+.+. |..++++|+++-.......+...|+... .+...|.
T Consensus 54 ~~I~sl~~--S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~---------------wv~skGd------- 109 (558)
T KOG0882|consen 54 GVILSLAV--SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAE---------------WVTSKGD------- 109 (558)
T ss_pred HHHHhhhc--cccceeEeeccCcccceeEEEeeccchhhhcccccCCCceE---------------EecCCCC-------
Confidence 77888887 457778888777 9999999999877665555444332110 0000110
Q ss_pred CCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCC-cceee-
Q 010287 192 CASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS-NQSFN- 268 (513)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~-~~~~~- 268 (513)
....+.++.-.++.+.++|-..... +...+-.-|..+|.++.+++.+..+++. ..|.|.-|..... +..-.
T Consensus 110 -~~s~IAVs~~~sg~i~VvD~~~d~~-----q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~ 183 (558)
T KOG0882|consen 110 -KISLIAVSLFKSGKIFVVDGFGDFC-----QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTN 183 (558)
T ss_pred -eeeeEEeecccCCCcEEECCcCCcC-----ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcccc
Confidence 0011223334556666665432211 1222335788999999999999999998 5999999988731 10000
Q ss_pred -ecccCc----cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecc-ccCCCCcc--------
Q 010287 269 -IVDVKP----ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE-QEAPGTRS-------- 334 (513)
Q Consensus 269 -~~~~~~----~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~-------- 334 (513)
.++++. ..+..-.....++.|+|++ ..+.+-+.|..|++++++++++....--.... +..+....
T Consensus 184 l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Velg 262 (558)
T KOG0882|consen 184 LNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELG 262 (558)
T ss_pred ccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehh
Confidence 011111 1122335667899999999 89999999999999999998864221000000 00000000
Q ss_pred -------ccccc-cccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccC-----------
Q 010287 335 -------FFTEI-IASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND----------- 395 (513)
Q Consensus 335 -------~~~~~-~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 395 (513)
-+..| ...-..+.|...+.+|+.|+---|++.++.+ +...+.+...+..+.....+|+..
T Consensus 263 RRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~t-n~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~ 341 (558)
T KOG0882|consen 263 RRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDT-NTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVA 341 (558)
T ss_pred hhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeec-CeEEEEeccchhhhhhhHHHHhhhhhccchhhhhh
Confidence 00111 1234567788899999998875689999986 665555433332111111111100
Q ss_pred -CccceeeEEEeCCCCEEEEEeCCCcEEEE
Q 010287 396 -SIFDKFECCLSGDGGRVATGSYSNLFRVF 424 (513)
Q Consensus 396 -~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 424 (513)
...+ .+.+.+|..+++++-..+.+++|
T Consensus 342 a~~np--~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 342 ASNNP--LLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred hccCc--ccccCCCCeEEEeeeecceEEEE
Confidence 0001 23466777788888888888888
No 290
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.79 E-value=1.7e-07 Score=77.09 Aligned_cols=72 Identities=24% Similarity=0.382 Sum_probs=60.0
Q ss_pred CeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEeC-
Q 010287 283 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY- 360 (513)
Q Consensus 283 ~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~- 360 (513)
.|++++-+|...+++++|+.||.+-+||.|+.... ...+..|+.+++.+-|+| ++..|+++++
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p---------------~S~l~ahk~~i~eV~FHpk~p~~Lft~sed 245 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP---------------VSLLKAHKAEIWEVHFHPKNPEHLFTCSED 245 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccch---------------HHHHHHhhhhhhheeccCCCchheeEecCC
Confidence 38999999988788899999999999999986431 223667788999999999 7788888775
Q ss_pred CeEEEEEcc
Q 010287 361 MTLKLWDIN 369 (513)
Q Consensus 361 ~~v~iwd~~ 369 (513)
|.+..||..
T Consensus 246 Gslw~wdas 254 (319)
T KOG4714|consen 246 GSLWHWDAS 254 (319)
T ss_pred CcEEEEcCC
Confidence 999999976
No 291
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.78 E-value=7.9e-08 Score=99.07 Aligned_cols=184 Identities=12% Similarity=0.160 Sum_probs=134.4
Q ss_pred cccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEE
Q 010287 230 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 308 (513)
Q Consensus 230 ~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v 308 (513)
.+-..|.++.=+|...+.++| .||.+++|....+++.... . ......|+.+.|+.+| +.+..+..||.+.+
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~------r-t~g~s~vtr~~f~~qG-nk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCF------R-TAGNSRVTRSRFNHQG-NKFGIVDGDGDLSL 2277 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEe------e-ccCcchhhhhhhcccC-CceeeeccCCceee
Confidence 444668888888888888888 7999999998877665432 1 2223889999999999 89999999999999
Q ss_pred EEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEE---eC-CeEEEEEccCCCCCeeeeeccccc
Q 010287 309 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR---DY-MTLKLWDINMDSGPVATFQVHEHL 384 (513)
Q Consensus 309 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~---~~-~~v~iwd~~~~~~~~~~~~~~~~~ 384 (513)
|.... + ....++. |......+.|-. ..++++ ++ +.+.+||...+...-..-..|.+.
T Consensus 2278 ~q~~p-k----~~~s~qc------------hnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~g 2338 (2439)
T KOG1064|consen 2278 WQASP-K----PYTSWQC------------HNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGG 2338 (2439)
T ss_pred cccCC-c----ceecccc------------CCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCC
Confidence 99762 1 1333333 334566666654 566653 34 999999976533322222566654
Q ss_pred ccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeE
Q 010287 385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVV 464 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 464 (513)
++.+++.|..+.|++|+.+|.|++||++.. +++..++. +. ...++++|+..|.+
T Consensus 2339 ---------------aT~l~~~P~~qllisggr~G~v~l~D~rqr-ql~h~~~~---------~~-~~~~f~~~ss~g~i 2392 (2439)
T KOG1064|consen 2339 ---------------ATVLAYAPKHQLLISGGRKGEVCLFDIRQR-QLRHTFQA---------LD-TREYFVTGSSEGNI 2392 (2439)
T ss_pred ---------------ceEEEEcCcceEEEecCCcCcEEEeehHHH-HHHHHhhh---------hh-hhheeeccCcccce
Confidence 458999999999999999999999999866 33344433 33 66789999999999
Q ss_pred EE
Q 010287 465 RR 466 (513)
Q Consensus 465 ~~ 466 (513)
+|
T Consensus 2393 kI 2394 (2439)
T KOG1064|consen 2393 KI 2394 (2439)
T ss_pred EE
Confidence 99
No 292
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=1.7e-06 Score=82.17 Aligned_cols=256 Identities=14% Similarity=0.146 Sum_probs=159.0
Q ss_pred ccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (513)
Q Consensus 36 ~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 115 (513)
.--.++.|+|.| +||.|+.. .|.+-|..+-+. ...+.-|. ..|
T Consensus 16 sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~-----------------------iqsie~h~------------s~V 58 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQL-----------------------IQSIELHQ------------SAV 58 (1062)
T ss_pred ccccccccCccc-eEEEecCc-eEEEEehhhhhh-----------------------hhccccCc------------cce
Confidence 336788999987 78888865 688888655443 24455565 789
Q ss_pred eeEEEeecC----------CCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCc
Q 010287 116 NKIRWCQSA----------NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (513)
Q Consensus 116 ~~i~~~~~~----------~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 185 (513)
+.++|.|-+ ..-.++++...|.|.+||...+.....
T Consensus 59 ~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~---------------------------------- 104 (1062)
T KOG1912|consen 59 TSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW---------------------------------- 104 (1062)
T ss_pred eEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh----------------------------------
Confidence 999998722 112455566679999999877643221
Q ss_pred cccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc---CCCEEEEE--cCCeEEEEEc
Q 010287 186 GERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGETFISA--DDLRINLWNL 260 (513)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~--~d~~i~vwd~ 260 (513)
+..|.+++..++|-+ +.+.+..+ ....|.+|+.
T Consensus 105 ------------------------------------------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwnt 142 (1062)
T KOG1912|consen 105 ------------------------------------------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNT 142 (1062)
T ss_pred ------------------------------------------hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEc
Confidence 234556677777754 44344444 6899999999
Q ss_pred CCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCC---c--cc
Q 010287 261 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT---R--SF 335 (513)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~---~--~~ 335 (513)
.+++..++ .........|+.+.|-+.+.+...+..|.+.+-+.-.........+.+....+... . ..
T Consensus 143 dtG~k~Wk--------~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~ 214 (1062)
T KOG1912|consen 143 DTGEKFWK--------YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERET 214 (1062)
T ss_pred cCCceeec--------cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhh
Confidence 99887664 22234456779999977777877788888877765433222222222222111000 0 00
Q ss_pred cc--ccc---------ccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeE
Q 010287 336 FT--EII---------ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 403 (513)
Q Consensus 336 ~~--~~~---------~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (513)
.. .+. -....++|+|.-+.++-... ..+.++|++. ..++.......+... -+
T Consensus 215 at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~-~~~l~vvpier~~ak---------------fv 278 (1062)
T KOG1912|consen 215 ATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGAK---------------FV 278 (1062)
T ss_pred hccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh-hceeEEEEeccCCcc---------------ee
Confidence 00 000 01233567885554444333 7899999986 667766665554322 35
Q ss_pred EEeCCC--CEEEEEeCCCcEEEEecCC
Q 010287 404 CLSGDG--GRVATGSYSNLFRVFGCSE 428 (513)
Q Consensus 404 ~~s~~~--~~l~~~~~dg~i~vwd~~~ 428 (513)
.+-|++ ..|++.-.||.+.+|-.+.
T Consensus 279 ~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 279 DVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EeccCCCcceEEEEecCCeEEEEEeec
Confidence 666665 4788999999999997765
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.75 E-value=1.9e-07 Score=81.78 Aligned_cols=158 Identities=11% Similarity=0.184 Sum_probs=96.2
Q ss_pred eEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC---cEEEEE
Q 010287 235 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLID 310 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~vwd 310 (513)
...+..++.+++++.+ ++....++++.......++++. .......+.+.|..+. .....+..-| .+.+|.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~-----~~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV-----SCVPKRPTAISFIRED-TSVLVADKAGDVYSFDILS 138 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeE-----eecccCcceeeeeecc-ceEEEEeecCCceeeeeec
Confidence 3455677888999988 6777667777644432222111 0111122333333333 2222222222 333333
Q ss_pred cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeee-eccccccccc
Q 010287 311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATF-QVHEHLRPKL 388 (513)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~-~~~~~~~~~~ 388 (513)
...+ ......+|..-+..++|+||+++|++++. ..|++-.... ...+..+ -+|...++
T Consensus 139 ~~~~-----------------~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFVS-- 198 (390)
T KOG3914|consen 139 ADSG-----------------RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFCLGHKEFVS-- 198 (390)
T ss_pred cccc-----------------CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhhccccHhhee--
Confidence 2211 11225788899999999999999999985 9999988774 3344443 45776643
Q ss_pred ccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc
Q 010287 389 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 432 (513)
Q Consensus 389 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 432 (513)
.++.-++ ..|++++.|++|++||+.+++.+
T Consensus 199 -------------~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 199 -------------TISLTDN-YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred -------------eeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence 6666644 55899999999999999999554
No 294
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.72 E-value=2.5e-06 Score=70.76 Aligned_cols=230 Identities=9% Similarity=-0.015 Sum_probs=134.6
Q ss_pred CCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccce
Q 010287 244 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 322 (513)
Q Consensus 244 ~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 322 (513)
..+|+.| ..|...+|...+.+....+.+ .|...|+-+.=.-+....+..++.|.++++.++.-+...
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd-------~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~----- 151 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCD-------VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK----- 151 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeec-------ccccchhhhhhhcccccceeeccCCcceeEEEEecCccc-----
Confidence 4567777 799999999987665444322 122211111101111134666788999998887654321
Q ss_pred eeccccCCCCccccccccc--cEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccc
Q 010287 323 LFEEQEAPGTRSFFTEIIA--SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 399 (513)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~--~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (513)
+..|.. .+.++++++|++++++.+| ..|..|.+..+++-+......... +.
T Consensus 152 -------------~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~----------D~--- 205 (344)
T KOG4532|consen 152 -------------FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS----------DH--- 205 (344)
T ss_pred -------------ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC----------CC---
Confidence 011112 2788999999999999776 999999998655444332211111 00
Q ss_pred eeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccc----eeecCCCCceeEEEEcCCCCc--eeeecCCCeEEEecCCCCC
Q 010287 400 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES----TTLEASKNPMRRQVQTPSRPS--RPLGSLSGVVRRVKGADNS 473 (513)
Q Consensus 400 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~--l~~~~~d~~i~~~~~~~~~ 473 (513)
-++..|+.....+|+++.||.+.|||++...... .+-..|.+.++.+.|++-|.+ |...-.-+.+.+.+.....
T Consensus 206 gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 206 GFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred ceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 1378899999999999999999999998753322 222357889999999986542 3222223334441111111
Q ss_pred ccc---cCCc-cccc-cCCeeEEEEeCCCCEEEEEcCCcEEEE
Q 010287 474 ALD---ANGN-AFDF-SMKLLHLAWHPSENSIACAASNSLYMY 511 (513)
Q Consensus 474 ~~~---~~~~-~~~~-~~~i~~~~~sp~~~~la~~~~~~~~i~ 511 (513)
..+ ...+ .+.| +..|..-.|+.++.-+-++++....-|
T Consensus 286 ~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ 328 (344)
T KOG4532|consen 286 NHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEY 328 (344)
T ss_pred eeeEEecCccccccccccccccccccCCCcccccccchhhhee
Confidence 101 0000 1122 234777788887776666665544444
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.72 E-value=4.2e-05 Score=67.36 Aligned_cols=145 Identities=11% Similarity=0.134 Sum_probs=89.7
Q ss_pred CeEEEEeccCCCEEEEE-cC--------CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC
Q 010287 234 HINSISNNSDGETFISA-DD--------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 304 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~-~d--------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 304 (513)
..+.+++.++|++.++. .. |.|..++.. ++ ... +...-...+.++|+|++..++++-+..+
T Consensus 87 ~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~--------~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 87 RPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTV--------VADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp EEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEE--------EEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred CCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEE--------EecCcccccceEECCcchheeecccccc
Confidence 37889999999977764 21 456666665 22 211 1223455789999999944556777889
Q ss_pred cEEEEEcCCcccccccceee-ccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccc
Q 010287 305 SIRLIDMRQSALCDTHSKLF-EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHE 382 (513)
Q Consensus 305 ~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~ 382 (513)
.|..+++..........+.+ +... ..+..-.+++..+|.+.++.-. +.|.+++.+ ++.+..+....
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~----------~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~--G~~~~~i~~p~ 224 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPG----------GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD--GKLLREIELPV 224 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SS----------SSCEEEEEEEBTTS-EEEEEETTTEEEEEETT--SCEEEEEE-SS
T ss_pred eeEEEeccccccceeeeeeEEEcCC----------CCcCCCcceEcCCCCEEEEEcCCCEEEEECCC--ccEEEEEcCCC
Confidence 99999986432211111222 1111 1134788999999988887655 999999977 77777776653
Q ss_pred ccccccccccccCCccceeeEEEe-CCCCEEEEE
Q 010287 383 HLRPKLCDLYENDSIFDKFECCLS-GDGGRVATG 415 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~ 415 (513)
.. +++++|. ++.+.|+..
T Consensus 225 ~~---------------~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 225 PR---------------PTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp SS---------------EEEEEEESTTSSEEEEE
T ss_pred CC---------------EEEEEEECCCCCEEEEE
Confidence 22 3589994 666665543
No 296
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.69 E-value=0.0001 Score=64.90 Aligned_cols=184 Identities=16% Similarity=0.185 Sum_probs=106.5
Q ss_pred eEEEEec-cCCCEEEEEcCCeEEEEEcCCCcceeeecccCcccccc-ccCCeEEEEEeCCCCeEEEEEeCC--------C
Q 010287 235 INSISNN-SDGETFISADDLRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSK--------G 304 (513)
Q Consensus 235 v~~~~~~-~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~d--------g 304 (513)
...+++. +++ .|+.+..+.+.++|+.+++.. .+... .... .....+.+++.|+| ++.++.... |
T Consensus 42 ~~G~~~~~~~g-~l~v~~~~~~~~~d~~~g~~~-~~~~~---~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g 115 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVADSGGIAVVDPDTGKVT-VLADL---PDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPG 115 (246)
T ss_dssp EEEEEEECTTS-EEEEEETTCEEEEETTTTEEE-EEEEE---ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSE
T ss_pred CceEEEEccCC-EEEEEEcCceEEEecCCCcEE-EEeec---cCCCcccCCCceEEEcCCC-CEEEEecCCCcccccccc
Confidence 5567777 554 555554455566688865422 22111 0011 34567899999999 777766543 4
Q ss_pred cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeee--c
Q 010287 305 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQ--V 380 (513)
Q Consensus 305 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~--~ 380 (513)
.|..++.. ++. ...... ....+.|+|+|+++.|+..+ . +.|..|++...+..+.... .
T Consensus 116 ~v~~~~~~-~~~----~~~~~~-------------~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~ 177 (246)
T PF08450_consen 116 SVYRIDPD-GKV----TVVADG-------------LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFI 177 (246)
T ss_dssp EEEEEETT-SEE----EEEEEE-------------ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEE
T ss_pred ceEEECCC-CeE----EEEecC-------------cccccceEECCcchheeecccccceeEEEeccccccceeeeeeEE
Confidence 56666655 332 111111 13578899999999887655 3 8999999875333222111 1
Q ss_pred ccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEE-cCCCCce
Q 010287 381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ-TPSRPSR 455 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l 455 (513)
+...... . .-.+++..+|++.++....+.|.+++.+ + +....+......+..++| -++.+.|
T Consensus 178 ~~~~~~g--------~---pDG~~vD~~G~l~va~~~~~~I~~~~p~-G-~~~~~i~~p~~~~t~~~fgg~~~~~L 240 (246)
T PF08450_consen 178 DFPGGPG--------Y---PDGLAVDSDGNLWVADWGGGRIVVFDPD-G-KLLREIELPVPRPTNCAFGGPDGKTL 240 (246)
T ss_dssp E-SSSSC--------E---EEEEEEBTTS-EEEEEETTTEEEEEETT-S-CEEEEEE-SSSSEEEEEEESTTSSEE
T ss_pred EcCCCCc--------C---CCcceEcCCCCEEEEEcCCCEEEEECCC-c-cEEEEEcCCCCCEEEEEEECCCCCEE
Confidence 1100000 0 1168999999988887788999999988 4 444555544457778888 3554443
No 297
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.69 E-value=4.2e-05 Score=64.65 Aligned_cols=231 Identities=16% Similarity=0.181 Sum_probs=120.9
Q ss_pred EEeccCCCEEEEEcCCeEEEEEcCCCccee-eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccc
Q 010287 238 ISNNSDGETFISADDLRINLWNLEISNQSF-NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 316 (513)
Q Consensus 238 ~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 316 (513)
++.+.+|+.||.-.|..|-+-..+..-... .... .-+.-.-.-+.++|+||+ .+||.+...|+|++||+....+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcq----VpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~l 77 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQ----VPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSEL 77 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEe----cCCCCCchheEEEECCCC-cEEEEEcCCCeEEEEeccccee
Confidence 566789999988888888777655322111 1000 011112234789999999 9999999999999999865432
Q ss_pred ccccceeeccccCCCCccccccccccEEEEEEeec-------CCEEEEEeCCeEEEEEccC----CCCCeeeeecccccc
Q 010287 317 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-------GRHILSRDYMTLKLWDINM----DSGPVATFQVHEHLR 385 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~-------~~~l~~~~~~~v~iwd~~~----~~~~~~~~~~~~~~~ 385 (513)
..+..... ........|..+.|-+- .++|+..-.|.++-|-+.. ..+....+......
T Consensus 78 -----f~I~p~~~-----~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~y- 146 (282)
T PF15492_consen 78 -----FVIPPAMS-----FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHY- 146 (282)
T ss_pred -----EEcCcccc-----cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccC-
Confidence 22222110 11122356777777542 2344444457777666532 11222222221111
Q ss_pred cccccccccCCccceeeEEEeCCCCEEEEEeCCCc-----------EEEEecCCCCccceeecCCCCceeEEEEcCCCCc
Q 010287 386 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL-----------FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS 454 (513)
Q Consensus 386 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-----------i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 454 (513)
..+|.++.++|..++|+.|+.... +.-|.+-++.. -.....+.+...
T Consensus 147 -----------p~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P-----------yyk~v~~~~~~~ 204 (282)
T PF15492_consen 147 -----------PHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP-----------YYKQVTSSEDDI 204 (282)
T ss_pred -----------CCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCC-----------cEEEccccCccc
Confidence 113568999999998887764221 33344333311 111111111111
Q ss_pred eeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 455 RPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 455 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
-......+..++...+ +-.........|..|+.||||+.||+.. ++.+.+|.
T Consensus 205 ~~~~~~~~~~~~~~~~------~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 205 TASSKRRGLLRIPSFK------FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWE 257 (282)
T ss_pred cccccccceeecccee------eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence 1111111122220000 0000011256799999999999999777 78888874
No 298
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=2.7e-08 Score=95.36 Aligned_cols=220 Identities=13% Similarity=0.220 Sum_probs=143.3
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
.+..|....+|++|+-+.++|++|+..|.|++|++.++... ....+|.
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e-----------------------~s~ncH~--------- 1143 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME-----------------------ESVNCHQ--------- 1143 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc-----------------------ccccccc---------
Confidence 34567889999999999999999999999999999887742 3456777
Q ss_pred cccccceeEEEeecCCCceEEEeec-CC-eEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTN-DK-TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~-d~-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 187 (513)
.+|+-+.= +.+|..+++.+. .. -..+|++..- ....
T Consensus 1144 ---SavT~veP--s~dgs~~Ltsss~S~PlsaLW~~~s~-~~~~------------------------------------ 1181 (1516)
T KOG1832|consen 1144 ---SAVTLVEP--SVDGSTQLTSSSSSSPLSALWDASST-GGPR------------------------------------ 1181 (1516)
T ss_pred ---cccccccc--cCCcceeeeeccccCchHHHhccccc-cCcc------------------------------------
Confidence 78888775 567777776543 22 4567887541 0000
Q ss_pred cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcce
Q 010287 188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 266 (513)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~ 266 (513)
..| ..-.++.|+...+.-+.| ......+||+++...+
T Consensus 1182 -------------------------------------Hsf-----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1182 -------------------------------------HSF-----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred -------------------------------------ccc-----cccceeehhhhHHHHHhcccccceEEEecccCcHH
Confidence 000 123467777654433334 4456789999988766
Q ss_pred eeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEE
Q 010287 267 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 346 (513)
Q Consensus 267 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 346 (513)
.+.+.. ..+....-++..|+|++ .+++ .|| .+||+|..+. ++.|+.... -..-
T Consensus 1220 ~tylt~----~~~~~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~~a----Ih~FD~ft~-------------~~~G 1272 (1516)
T KOG1832|consen 1220 QTYLTD----TVTSSYSNNLAHFSPCD-TLIL---NDG--VLWDVRIPEA----IHRFDQFTD-------------YGGG 1272 (1516)
T ss_pred HHhcCc----chhhhhhccccccCCCc-ceEe---eCc--eeeeeccHHH----Hhhhhhhee-------------cccc
Confidence 543211 11122233788999998 7765 555 4799988654 444443221 1223
Q ss_pred EEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEE
Q 010287 347 KFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 414 (513)
Q Consensus 347 ~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 414 (513)
.|+|.|..++..++ |||+++ .+.++..+.-... .+.|+..|..++.
T Consensus 1273 ~FHP~g~eVIINSE----IwD~RT-F~lLh~VP~Ldqc-----------------~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1273 GFHPSGNEVIINSE----IWDMRT-FKLLHSVPSLDQC-----------------AVTFNSTGDVMYA 1318 (1516)
T ss_pred cccCCCceEEeech----hhhhHH-HHHHhcCccccce-----------------EEEeccCccchhh
Confidence 58999998887664 999997 6666655443332 6788888876653
No 299
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.65 E-value=4.3e-05 Score=66.62 Aligned_cols=112 Identities=13% Similarity=0.173 Sum_probs=67.4
Q ss_pred ccccCCeEEEEEeCCCCeEEEEEeCCCc-------EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee
Q 010287 278 EDLTEVITSAEFHPTHCNMLAYSSSKGS-------IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 350 (513)
Q Consensus 278 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~-------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp 350 (513)
.-|...|..+++.++| ..++..-..|. +-+++. +.. +..+..+.. ......+.+-+|++++
T Consensus 159 ~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~--g~~----~~~~~~p~~-----~~~~l~~Y~gSIa~~~ 226 (305)
T PF07433_consen 159 DLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRR--GGA----LRLLPAPEE-----QWRRLNGYIGSIAADR 226 (305)
T ss_pred cccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcC--CCc----ceeccCChH-----HHHhhCCceEEEEEeC
Confidence 3477789999999998 55554444332 222321 111 111221111 1233447899999999
Q ss_pred cCCEEEEEe-C-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcE
Q 010287 351 NGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 421 (513)
Q Consensus 351 ~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 421 (513)
++.++++.+ . +.+.+||..+ +..+......... .++-.+++ ++++.+. |.+
T Consensus 227 ~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l~D~c-----------------Gva~~~~~-f~~ssG~-G~~ 279 (305)
T PF07433_consen 227 DGRLIAVTSPRGGRVAVWDAAT-GRLLGSVPLPDAC-----------------GVAPTDDG-FLVSSGQ-GQL 279 (305)
T ss_pred CCCEEEEECCCCCEEEEEECCC-CCEeeccccCcee-----------------eeeecCCc-eEEeCCC-ccE
Confidence 999888765 4 9999999986 7776665544422 55666565 5665554 443
No 300
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=1.3e-07 Score=81.04 Aligned_cols=160 Identities=16% Similarity=0.243 Sum_probs=112.1
Q ss_pred EeccC--CCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccc
Q 010287 239 SNNSD--GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 316 (513)
Q Consensus 239 ~~~~~--~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 316 (513)
+|+-+ +-.+.+|.+-.+-+-+++++-+. .+. ..+.|.++.|...+ +++..|+.+|.|..+|+|.+..
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~q---------sf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnq 286 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQ---------SFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQ 286 (425)
T ss_pred hhhhccceeeecccccceeEEEEeeccccc---------ccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeeccc
Confidence 55543 33344556778888999877543 333 46778999999887 8999999999999999997632
Q ss_pred ccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEeC-CeEEEEEccCCCCC---eeeeecccccccccccc
Q 010287 317 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGP---VATFQVHEHLRPKLCDL 391 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~-~~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~ 391 (513)
-.. + ....--|.+.|+++..-. ++++|.+.+. |.|++||++. -+. +..+.+|......+
T Consensus 287 G~~----~--------~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l--- 350 (425)
T KOG2695|consen 287 GNG----W--------CAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYL--- 350 (425)
T ss_pred CCC----c--------ceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceeeeeccccccccc---
Confidence 100 0 001122456788887766 6788887764 9999999986 555 78888887642211
Q ss_pred cccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceee
Q 010287 392 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL 436 (513)
Q Consensus 392 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 436 (513)
-+-..+....++++++|...+||.+..+ .++.++
T Consensus 351 ----------~~~v~~eeg~I~s~GdDcytRiWsl~~g-hLl~ti 384 (425)
T KOG2695|consen 351 ----------PAHVKEEEGSIFSVGDDCYTRIWSLDSG-HLLCTI 384 (425)
T ss_pred ----------ccccccccceEEEccCeeEEEEEecccC-ceeecc
Confidence 2345667778899999999999999988 444443
No 301
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.60 E-value=2.8e-05 Score=73.43 Aligned_cols=304 Identities=10% Similarity=0.065 Sum_probs=156.7
Q ss_pred CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeecCC
Q 010287 46 SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSAN 125 (513)
Q Consensus 46 ~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~ 125 (513)
.+..+.+++.+|.|..+|..+++.. ....+.+.-. .. +.. +
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~---------------------W~~~~~~~~~-----------~~---p~v----~ 104 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRL---------------------WRVDLDERLS-----------GG---VGA----D 104 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEe---------------------eeecCCCCcc-----------cc---eEE----c
Confidence 4668888889999999998877765 1111111110 11 122 1
Q ss_pred CceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCC
Q 010287 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (513)
Q Consensus 126 ~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 205 (513)
+..++.++.++.+..+|..+|+.............. ... .++. ++....++
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~---------------p~v-~~~~-------------v~v~~~~g 155 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSP---------------PLV-ANGL-------------VVVRTNDG 155 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecC---------------CEE-ECCE-------------EEEECCCC
Confidence 346777888888888888888776655544332100 000 0111 13334556
Q ss_pred ceeceeeccCCcccccceeeE-e-eccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccC
Q 010287 206 SLRLPVVTSQETNLVAGCRRI-Y-AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTE 282 (513)
Q Consensus 206 ~i~~~~~~~~~~~~~~~~~~~-~-~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (513)
.+..+|..+++.......... . ...... .... + ..++.+ .++.+..+|.++++...+.-...+.. .....
T Consensus 156 ~l~a~d~~tG~~~W~~~~~~~~~~~~~~~s----p~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g-~~~~~ 228 (377)
T TIGR03300 156 RLTALDAATGERLWTYSRVTPALTLRGSAS----PVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKG-RTELE 228 (377)
T ss_pred eEEEEEcCCCceeeEEccCCCceeecCCCC----CEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCC-CCchh
Confidence 667776655543221110000 0 000001 1111 2 355566 68899999998876554321000000 00000
Q ss_pred C---e-EEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEE
Q 010287 283 V---I-TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 358 (513)
Q Consensus 283 ~---i-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~ 358 (513)
. + .+..+. + ..++.++.+|.+..||..+++.... .+. ....... .++..++.+
T Consensus 229 ~~~~~~~~p~~~--~-~~vy~~~~~g~l~a~d~~tG~~~W~----~~~--------------~~~~~p~--~~~~~vyv~ 285 (377)
T TIGR03300 229 RLVDVDGDPVVD--G-GQVYAVSYQGRVAALDLRSGRVLWK----RDA--------------SSYQGPA--VDDNRLYVT 285 (377)
T ss_pred hhhccCCccEEE--C-CEEEEEEcCCEEEEEECCCCcEEEe----ecc--------------CCccCce--EeCCEEEEE
Confidence 0 0 111122 3 4677788899999999998875332 110 0111111 235555555
Q ss_pred e-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeec
Q 010287 359 D-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE 437 (513)
Q Consensus 359 ~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 437 (513)
+ +|.+..+|..+ ++.+-......... ...... .+..|++++.+|.|+++|..++ +++..++
T Consensus 286 ~~~G~l~~~d~~t-G~~~W~~~~~~~~~--------------~ssp~i--~g~~l~~~~~~G~l~~~d~~tG-~~~~~~~ 347 (377)
T TIGR03300 286 DADGVVVALDRRS-GSELWKNDELKYRQ--------------LTAPAV--VGGYLVVGDFEGYLHWLSREDG-SFVARLK 347 (377)
T ss_pred CCCCeEEEEECCC-CcEEEccccccCCc--------------cccCEE--ECCEEEEEeCCCEEEEEECCCC-CEEEEEE
Confidence 5 59999999986 65553331111100 001222 4568889999999999999888 4445555
Q ss_pred CCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 438 ASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 438 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.+..++..--...++ .|..++.||.+..
T Consensus 348 ~~~~~~~~sp~~~~~-~l~v~~~dG~l~~ 375 (377)
T TIGR03300 348 TDGSGIASPPVVVGD-GLLVQTRDGDLYA 375 (377)
T ss_pred cCCCccccCCEEECC-EEEEEeCCceEEE
Confidence 444333222222233 4667777887754
No 302
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.1e-06 Score=76.46 Aligned_cols=243 Identities=16% Similarity=0.140 Sum_probs=136.1
Q ss_pred ccccCCeEEEEeccCCCEEEEE-c-CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCe-EEE-EEeCCC
Q 010287 229 HAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN-MLA-YSSSKG 304 (513)
Q Consensus 229 ~~h~~~v~~~~~~~~~~~l~s~-~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~-~~~~dg 304 (513)
..|...|.+++.+.++..+.+. . |..++++|++.-... ..+ .+......+.. ..++.... .++ +.-.++
T Consensus 50 raHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dmi-nmi-----KL~~lPg~a~w-v~skGd~~s~IAVs~~~sg 122 (558)
T KOG0882|consen 50 RAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMI-NMI-----KLVDLPGFAEW-VTSKGDKISLIAVSLFKSG 122 (558)
T ss_pred HHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchh-hhc-----ccccCCCceEE-ecCCCCeeeeEEeecccCC
Confidence 5677778899999999999996 5 999999999865432 111 11111222221 12222111 333 334578
Q ss_pred cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCC-C----Ceeee
Q 010287 305 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDS-G----PVATF 378 (513)
Q Consensus 305 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~-~----~~~~~ 378 (513)
.|.++|-+...... .. +..-|.++|.++.+.|-+..+++.+. |.|.-|....+- . ....+
T Consensus 123 ~i~VvD~~~d~~q~---~~-----------fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~ 188 (558)
T KOG0882|consen 123 KIFVVDGFGDFCQD---GY-----------FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFEL 188 (558)
T ss_pred CcEEECCcCCcCcc---ce-----------ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccc
Confidence 99999976543211 11 12336689999999999999998876 999999976211 1 11111
Q ss_pred ecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeee
Q 010287 379 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 458 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 458 (513)
+.... +..+...+ ....++.|+|++..+.+-+.|..|++++.+++ ++.+.+......- ...|...+-+.
T Consensus 189 K~eTd----Ly~f~K~K--t~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvqeiDE~~t~~---~~q~ks~y~l~- 257 (558)
T KOG0882|consen 189 KHETD----LYGFPKAK--TEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQEIDEVLTDA---QYQPKSPYGLM- 257 (558)
T ss_pred cccch----hhcccccc--cCccceEEccccCcccccCcccEEEEEEeccc-hhhhhhhccchhh---hhccccccccc-
Confidence 11111 11111111 11348999999999999999999999999988 3334433211111 11111111000
Q ss_pred cCCCeEEEecCCCCCccccCCccccc-cCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287 459 SLSGVVRRVKGADNSALDANGNAFDF-SMKLLHLAWHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 459 ~~d~~i~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~~~~~~i~~ 512 (513)
.+.+ +.+.+ .......| +..-+.+.|...+++|.-++-=++.+++
T Consensus 258 ----~Vel--gRRma---verelek~~~~~~~~~~fdes~~flly~t~~gikvin 303 (558)
T KOG0882|consen 258 ----HVEL--GRRMA---VERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVIN 303 (558)
T ss_pred ----eeeh--hhhhh---HHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEE
Confidence 0111 11111 00001112 2344677888889999888877777765
No 303
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.58 E-value=9.5e-08 Score=56.41 Aligned_cols=34 Identities=21% Similarity=0.435 Sum_probs=32.0
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEE
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~ 63 (513)
...+|.+.|++++|+|++.+||+|+.|+.|++||
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4568999999999999999999999999999997
No 304
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.53 E-value=4.6e-07 Score=77.71 Aligned_cols=137 Identities=15% Similarity=0.116 Sum_probs=93.3
Q ss_pred ccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 010287 231 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 309 (513)
Q Consensus 231 h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vw 309 (513)
..+.|.++.|...++++..| ..|.|..+|++...+-- . .+...--|.+.|+++..-......|++.+.+|.|++|
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~-~---~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLy 326 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN-G---WCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLY 326 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC-C---cceEEEEcCcchhhhhhhccccceEeeccCcCceeEe
Confidence 34568888888888888888 89999999998652210 0 0112235888999998877333788999999999999
Q ss_pred EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEE-EeCCeEEEEEccCCCCCeeeeecccc
Q 010287 310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEH 383 (513)
Q Consensus 310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~~~~v~iwd~~~~~~~~~~~~~~~~ 383 (513)
|+|.-+.. +.++.+++|-... .-.-+...+....+++ |+|...+||.++. ++.+.+++....
T Consensus 327 D~R~~K~~-~~V~qYeGHvN~~----------a~l~~~v~~eeg~I~s~GdDcytRiWsl~~-ghLl~tipf~~s 389 (425)
T KOG2695|consen 327 DLRATKCK-KSVMQYEGHVNLS----------AYLPAHVKEEEGSIFSVGDDCYTRIWSLDS-GHLLCTIPFPYS 389 (425)
T ss_pred eehhhhcc-cceeeeecccccc----------cccccccccccceEEEccCeeEEEEEeccc-CceeeccCCCCc
Confidence 99875532 2356666654321 1112334455555665 5569999999996 888887765543
No 305
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.49 E-value=0.0002 Score=62.63 Aligned_cols=194 Identities=14% Similarity=0.104 Sum_probs=113.7
Q ss_pred EEeccCCCEEEEE------cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe----------
Q 010287 238 ISNNSDGETFISA------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---------- 301 (513)
Q Consensus 238 ~~~~~~~~~l~s~------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---------- 301 (513)
-+|++||++|++. ..|.|-|||...+-.... .+..|.-....+.+.||+ ..|+.+-
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~-------E~~s~GIGPHel~l~pDG-~tLvVANGGI~Thpd~G 127 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIG-------EFPSHGIGPHELLLMPDG-ETLVVANGGIETHPDSG 127 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEe-------EecCCCcChhhEEEcCCC-CEEEEEcCCCccCcccC
Confidence 3599999999986 268899999983322222 456666667788899998 4555442
Q ss_pred --------CCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-C-------eEEE
Q 010287 302 --------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M-------TLKL 365 (513)
Q Consensus 302 --------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~-------~v~i 365 (513)
++..+.+.|.++|++..+ ...+ -.-|..+|..+++.++|..++...+ | -|-+
T Consensus 128 R~kLNl~tM~psL~~ld~~sG~ll~q----~~Lp--------~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~ 195 (305)
T PF07433_consen 128 RAKLNLDTMQPSLVYLDARSGALLEQ----VELP--------PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVAL 195 (305)
T ss_pred ceecChhhcCCceEEEecCCCceeee----eecC--------ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEE
Confidence 122333444445544221 1110 0235568999999999998887543 2 2334
Q ss_pred EEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCCCccceeecCCCCcee
Q 010287 366 WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMR 444 (513)
Q Consensus 366 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~ 444 (513)
++. +..+..+.........+. -| +-++++++++.++++.+ ..+.+.+||..++..+ .. ..-..+.
T Consensus 196 ~~~---g~~~~~~~~p~~~~~~l~-~Y-------~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~-~~--~~l~D~c 261 (305)
T PF07433_consen 196 HRR---GGALRLLPAPEEQWRRLN-GY-------IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL-GS--VPLPDAC 261 (305)
T ss_pred EcC---CCcceeccCChHHHHhhC-Cc-------eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe-ec--cccCcee
Confidence 432 333433333222111110 01 33899999998886555 7889999999988322 11 1123344
Q ss_pred EEEEcCCCCceeeecCCCeEEE
Q 010287 445 RQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 445 ~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.++..+++ ++++.+....+.+
T Consensus 262 Gva~~~~~-f~~ssG~G~~~~~ 282 (305)
T PF07433_consen 262 GVAPTDDG-FLVSSGQGQLIRL 282 (305)
T ss_pred eeeecCCc-eEEeCCCccEEEc
Confidence 55666665 7777766555555
No 306
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.46 E-value=7.5e-06 Score=67.70 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=57.6
Q ss_pred cEEEEEEeecCC-EEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC-CCCEEEEEeCC
Q 010287 342 SISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYS 418 (513)
Q Consensus 342 ~v~~i~~sp~~~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d 418 (513)
.|.+++-+|..+ .+++|++ |.+-+||.+....+...+..|... ++.+-|+| ++..|+++++|
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~---------------i~eV~FHpk~p~~Lft~sed 245 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAE---------------IWEVHFHPKNPEHLFTCSED 245 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhh---------------hhheeccCCCchheeEecCC
Confidence 488999999555 4555666 999999999755666777777765 44889998 56789999999
Q ss_pred CcEEEEecCC
Q 010287 419 NLFRVFGCSE 428 (513)
Q Consensus 419 g~i~vwd~~~ 428 (513)
|.+.-||..+
T Consensus 246 Gslw~wdas~ 255 (319)
T KOG4714|consen 246 GSLWHWDAST 255 (319)
T ss_pred CcEEEEcCCC
Confidence 9999999875
No 307
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.45 E-value=0.0001 Score=64.67 Aligned_cols=154 Identities=13% Similarity=0.164 Sum_probs=80.8
Q ss_pred CCEEEEEcCCeEEEEEcCCCcceeeecccCcccccccc-CCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccce
Q 010287 244 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLT-EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 322 (513)
Q Consensus 244 ~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 322 (513)
+..++...++.|..+|..+++...+..... ..... .......+. + ..++.+..++.|..+|+++|+...+
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~---~~~~~~~~~~~~~~~--~-~~~~~~~~~g~l~~~d~~tG~~~w~--- 147 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTS---SPPAGVRSSSSPAVD--G-DRLYVGTSSGKLVALDPKTGKLLWK--- 147 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCEEEEEEE-S---SCTCSTB--SEEEEE--T-TEEEEEETCSEEEEEETTTTEEEEE---
T ss_pred cccccccceeeeEecccCCcceeeeecccc---ccccccccccCceEe--c-CEEEEEeccCcEEEEecCCCcEEEE---
Confidence 333333467899999988888766521100 00011 111122222 4 5778888899999999999987433
Q ss_pred eeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCe-EEEEEccCCCCCeeeeecccccccccccccccCCccce
Q 010287 323 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMT-LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 400 (513)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 400 (513)
........... +. ....+..-....++ .++.++ ++. +.+ |+.+ ++.+-... ....
T Consensus 148 -~~~~~~~~~~~-~~-~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~t-g~~~w~~~-~~~~---------------- 204 (238)
T PF13360_consen 148 -YPVGEPRGSSP-IS-SFSDINGSPVISDG-RVYVSSGDGRVVAV-DLAT-GEKLWSKP-ISGI---------------- 204 (238)
T ss_dssp -EESSTT-SS---EE-EETTEEEEEECCTT-EEEEECCTSSEEEE-ETTT-TEEEEEEC-SS-E----------------
T ss_pred -eecCCCCCCcc-ee-eecccccceEEECC-EEEEEcCCCeEEEE-ECCC-CCEEEEec-CCCc----------------
Confidence 22211000000 00 00111222222245 444444 554 555 8886 54332222 1111
Q ss_pred eeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287 401 FECCLSGDGGRVATGSYSNLFRVFGCSEGS 430 (513)
Q Consensus 401 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 430 (513)
......++..|+.++.++.|..||+++++
T Consensus 205 -~~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 205 -YSLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp -CECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred -cCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 12245677888888899999999999983
No 308
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.44 E-value=4.5e-05 Score=76.76 Aligned_cols=239 Identities=14% Similarity=0.125 Sum_probs=131.5
Q ss_pred CCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287 233 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 311 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~ 311 (513)
+.|.++.|..+...++.+ ..|.|.+-|.++.... + ...-...|.+++|+||+ .+++..+.++++.+-+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e--i-------vg~vd~GI~aaswS~De-e~l~liT~~~tll~mT- 137 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE--I-------VGNVDNGISAASWSPDE-ELLALITGRQTLLFMT- 137 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee--e-------eeeccCceEEEeecCCC-cEEEEEeCCcEEEEEe-
Confidence 568999999988888887 7999999988755432 1 23346779999999999 8888888877776643
Q ss_pred CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccc
Q 010287 312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 391 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
.+-..... +.+..... -.+....+-|-.... =+-|+.|.....+.....+.+.....+..
T Consensus 138 ~~f~~i~E--~~L~~d~~---------~~sk~v~VGwGrkeT-qfrgs~gr~~~~~~~~~ek~~~~~~~~~~-------- 197 (1265)
T KOG1920|consen 138 KDFEPIAE--KPLDADDE---------RKSKFVNVGWGRKET-QFRGSEGRQAARQKIEKEKALEQIEQDDH-------- 197 (1265)
T ss_pred ccccchhc--cccccccc---------cccccceecccccce-eeecchhhhcccccccccccccchhhccC--------
Confidence 22111110 00100000 001222233322111 11122222221111110111111111111
Q ss_pred cccCCccceeeEEEeCCCCEEEEE-----eCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeee---cCCCe
Q 010287 392 YENDSIFDKFECCLSGDGGRVATG-----SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG---SLSGV 463 (513)
Q Consensus 392 ~~~~~~~~v~~~~~s~~~~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~ 463 (513)
-+.++|--||+++++. .....|+|||.+ + .+..+-+....--.++.|.|.|.++|+- ..|+.
T Consensus 198 --------~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~ 267 (1265)
T KOG1920|consen 198 --------KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD 267 (1265)
T ss_pred --------CceEEEccCCcEEEEEEEeccCCceeEEEeccc-c-hhhcccCcccccccceeecCCCCeEeeeeecCCCCc
Confidence 1279999999999873 333789999987 3 3323333333444578999999999875 34555
Q ss_pred EEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEE---EcCCc-EEEEe
Q 010287 464 VRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIAC---AASNS-LYMYY 512 (513)
Q Consensus 464 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~---~~~~~-~~i~~ 512 (513)
|.+.+...+.-.++......-..++..++|+.++..||+ ...+. +.+|.
T Consensus 268 IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 268 IVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred EEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence 666222222211111111111344999999999999997 44555 88875
No 309
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.00017 Score=70.15 Aligned_cols=127 Identities=13% Similarity=0.146 Sum_probs=80.0
Q ss_pred cCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287 232 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 310 (513)
Q Consensus 232 ~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd 310 (513)
..++.+++++.+-+.++.| .+|.|..+.-+-.+.... +..-......+|+.+.+..++ ..++....-..|.+|.
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs----r~~~~~~~~~pITgL~~~~d~-~s~lFv~Tt~~V~~y~ 199 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS----RQDYSHRGKEPITGLALRSDG-KSVLFVATTEQVMLYS 199 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc----ceeeeccCCCCceeeEEecCC-ceeEEEEecceeEEEE
Confidence 3568889999999999999 899999884321111100 001122346889999999888 4423344556788898
Q ss_pred cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeee
Q 010287 311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ 379 (513)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~ 379 (513)
+...... ... +..|...+.|..+++....++++....+.+|+... ..+...+.
T Consensus 200 l~gr~p~---~~~------------ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~-~~~cfaf~ 252 (933)
T KOG2114|consen 200 LSGRTPS---LKV------------LDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDG-RGPCFAFE 252 (933)
T ss_pred ecCCCcc---eee------------eccCCccceeeecCCCCccEEEecCceEEEEcCCC-cceeeeec
Confidence 8633210 111 23344678999998755545555556899999874 44444444
No 310
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.40 E-value=0.00039 Score=70.37 Aligned_cols=112 Identities=17% Similarity=0.273 Sum_probs=72.2
Q ss_pred EEEEeccCCCEEEEE-----cC-CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC---CCcE
Q 010287 236 NSISNNSDGETFISA-----DD-LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---KGSI 306 (513)
Q Consensus 236 ~~~~~~~~~~~l~s~-----~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i 306 (513)
..++|--||+++++. .+ ..|++||.+ +... . .-......=.+++|-|.| .++++-.. |+.|
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Ln-s-------~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~I 268 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALN-S-------TSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDI 268 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhh-c-------ccCcccccccceeecCCC-CeEeeeeecCCCCcE
Confidence 468999999999983 24 899999987 3211 1 011122333589999988 78776543 5678
Q ss_pred EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEE---EeC-CeEEEEEccC
Q 010287 307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS---RDY-MTLKLWDINM 370 (513)
Q Consensus 307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~---~~~-~~v~iwd~~~ 370 (513)
.+|. ++|-........+... ...+..++|+.++..|++ ... ..|++|-+.+
T Consensus 269 vffE-rNGL~hg~f~l~~p~d------------e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 269 VFFE-RNGLRHGEFVLPFPLD------------EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred EEEe-cCCccccccccCCccc------------ccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 8887 4444322111111111 134899999999999997 233 5599999875
No 311
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.37 E-value=1e-06 Score=51.88 Aligned_cols=34 Identities=35% Similarity=0.526 Sum_probs=32.2
Q ss_pred ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287 276 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 310 (513)
Q Consensus 276 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd 310 (513)
.+.+|...|++++|+|++ .+|++++.|+.|++||
T Consensus 6 ~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 568899999999999998 9999999999999997
No 312
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.35 E-value=0.0016 Score=61.16 Aligned_cols=73 Identities=18% Similarity=0.225 Sum_probs=59.4
Q ss_pred cccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEE
Q 010287 279 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 358 (513)
Q Consensus 279 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~ 358 (513)
.....|.+++++|+. ..++.|+.||.|.+||...+... ..+. .-..+.++|+|+|.++++|
T Consensus 257 pL~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~~t~-----~~ka-------------~~~P~~iaWHp~gai~~V~ 317 (545)
T PF11768_consen 257 PLPSQVICCARSPSE-DKLVLGCEDGSIILYDTTRGVTL-----LAKA-------------EFIPTLIAWHPDGAIFVVG 317 (545)
T ss_pred ecCCcceEEecCccc-ceEEEEecCCeEEEEEcCCCeee-----eeee-------------cccceEEEEcCCCcEEEEE
Confidence 457789999999998 89999999999999998765321 1111 1246889999999999999
Q ss_pred eC-CeEEEEEccC
Q 010287 359 DY-MTLKLWDINM 370 (513)
Q Consensus 359 ~~-~~v~iwd~~~ 370 (513)
++ |.+.+||+..
T Consensus 318 s~qGelQ~FD~AL 330 (545)
T PF11768_consen 318 SEQGELQCFDMAL 330 (545)
T ss_pred cCCceEEEEEeec
Confidence 98 9999999975
No 313
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.34 E-value=0.001 Score=63.14 Aligned_cols=183 Identities=10% Similarity=0.033 Sum_probs=90.9
Q ss_pred EEEEE-cCCeEEEEEcCCCcceeeecccCc-cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccccee
Q 010287 246 TFISA-DDLRINLWNLEISNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 323 (513)
Q Consensus 246 ~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 323 (513)
.++.+ .++.+.-+|.++++...+.....+ ..+.....++ .. ++ .++.++.+|.+..+|..+++...+..
T Consensus 162 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~----v~-~~--~v~~~~~~g~v~a~d~~~G~~~W~~~-- 232 (394)
T PRK11138 162 LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA----TA-FG--GAIVGGDNGRVSAVLMEQGQLIWQQR-- 232 (394)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCE----EE-CC--EEEEEcCCCEEEEEEccCChhhheec--
Confidence 34444 688888899888876655311000 0001111111 11 22 46667789999999999887644311
Q ss_pred eccccCCCCccccccccccEEEEEEee---cCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccce
Q 010287 324 FEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 400 (513)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~v~~i~~sp---~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 400 (513)
+........ + .....+.-+| ++..++.+.++.+..+|..+ ++.+-.......
T Consensus 233 ~~~~~~~~~---~----~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~----------------- 287 (394)
T PRK11138 233 ISQPTGATE---I----DRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS-GQIVWKREYGSV----------------- 287 (394)
T ss_pred cccCCCccc---h----hcccccCCCcEEECCEEEEEEcCCeEEEEECCC-CCEEEeecCCCc-----------------
Confidence 000000000 0 0011111122 34444444458999999986 654433221110
Q ss_pred eeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 401 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 401 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
..+. .++..|+.++.+|.+..+|..+++.+-..-..........++ .+..+..++.||.+..
T Consensus 288 ~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ 349 (394)
T PRK11138 288 NDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHW 349 (394)
T ss_pred cCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEE
Confidence 0111 245677778889999999998874321111000011111111 2456677788888876
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=2.1e-05 Score=75.57 Aligned_cols=192 Identities=14% Similarity=0.167 Sum_probs=121.6
Q ss_pred ccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccc
Q 010287 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (513)
Q Consensus 32 ~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (513)
....+.++|++++ ++++|-|+.+|.|++++...... ..-.|.
T Consensus 36 ~~~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~-------------------------~~~~~s----------- 77 (846)
T KOG2066|consen 36 FLQNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNPK-------------------------TNFDHS----------- 77 (846)
T ss_pred HHhhhHHHHHHhh--cceeeeccccceEEEEecCCccc-------------------------cccccc-----------
Confidence 3456888888887 57999999999999999654321 111222
Q ss_pred cccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccC
Q 010287 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (513)
Q Consensus 112 ~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 191 (513)
.. ..+|.++++||.||+|.|-.+.+.+......+
T Consensus 78 -~~--------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df------------------------------------- 111 (846)
T KOG2066|consen 78 -SS--------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF------------------------------------- 111 (846)
T ss_pred -cc--------ccCCceEEEecCCCcEEEeeccCCccceeEec-------------------------------------
Confidence 11 45788999999999999988877654333221
Q ss_pred CCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-----CCEEEEEc-CCeEEEEEcCCCcc
Q 010287 192 CASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-----GETFISAD-DLRINLWNLEISNQ 265 (513)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~l~s~~-d~~i~vwd~~~~~~ 265 (513)
..++.+++++|+ .+.+++|+ .| +.++.-+--+.
T Consensus 112 ----------------------------------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn 150 (846)
T KOG2066|consen 112 ----------------------------------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN 150 (846)
T ss_pred ----------------------------------------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC
Confidence 134778888887 56788874 55 77775432222
Q ss_pred eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287 266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 345 (513)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 345 (513)
...+ .+....++|.++.|.. +++|-++.+| |++||+.+++.. ..++.+...... ......
T Consensus 151 k~~v------~l~~~eG~I~~i~W~g---~lIAWand~G-v~vyd~~~~~~l----~~i~~p~~~~R~------e~fpph 210 (846)
T KOG2066|consen 151 KDSV------VLSEGEGPIHSIKWRG---NLIAWANDDG-VKVYDTPTRQRL----TNIPPPSQSVRP------ELFPPH 210 (846)
T ss_pred ccce------eeecCccceEEEEecC---cEEEEecCCC-cEEEecccccee----eccCCCCCCCCc------ccCCCc
Confidence 1111 2344578999999975 6788876665 899999877642 222222111000 123345
Q ss_pred EEEeecCCEEEEEeCCeEEEEEcc
Q 010287 346 IKFARNGRHILSRDYMTLKLWDIN 369 (513)
Q Consensus 346 i~~sp~~~~l~~~~~~~v~iwd~~ 369 (513)
+.|.++.++++ |-..+|+|..++
T Consensus 211 l~W~~~~~LVI-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 211 LHWQDEDRLVI-GWGDSVKICSIK 233 (846)
T ss_pred eEecCCCeEEE-ecCCeEEEEEEe
Confidence 77876655444 444578888887
No 315
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=3.8e-05 Score=74.19 Aligned_cols=72 Identities=10% Similarity=0.051 Sum_probs=48.0
Q ss_pred CCceeEEEEcCCCCceeeecCCCeEEE-ec-CCCCCccc-----cCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEE
Q 010287 440 KNPMRRQVQTPSRPSRPLGSLSGVVRR-VK-GADNSALD-----ANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 511 (513)
Q Consensus 440 ~~~v~~~~~~~~~~~l~~~~~d~~i~~-~~-~~~~~~~~-----~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~ 511 (513)
...+.+++++..+..|+.|...|.+.+ .+ +....+.+ ......+..+.|+.+.|.|-.+.+|+.+...+++.
T Consensus 303 ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~v~ll 381 (1416)
T KOG3617|consen 303 GEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEEDVVLL 381 (1416)
T ss_pred CCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhhheeee
Confidence 356789999999999999999999888 11 11111111 11112234678999999998888887776655553
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=0.0002 Score=63.39 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=30.1
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceee
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK 149 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~ 149 (513)
..|..++|+|...| ++..++.+++|+|.|+++..+.
T Consensus 194 ~~IrdlafSp~~~G-Ll~~asl~nkiki~dlet~~~v 229 (463)
T KOG1645|consen 194 SFIRDLAFSPFNEG-LLGLASLGNKIKIMDLETSCVV 229 (463)
T ss_pred hhhhhhccCccccc-eeeeeccCceEEEEecccceee
Confidence 78999999886553 7888999999999999987544
No 317
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.24 E-value=2.1e-06 Score=79.97 Aligned_cols=211 Identities=15% Similarity=0.210 Sum_probs=125.5
Q ss_pred ccccEEEEEEcCC--CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccc
Q 010287 34 EVDIISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (513)
Q Consensus 34 h~~~V~~v~~sp~--g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (513)
....+.|++++-+ ..++++|..+|.|.+-........ -.....+|.
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS---------------------s~E~tp~~a----------- 102 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS---------------------SAEVTPGYA----------- 102 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc---------------------cceeccccc-----------
Confidence 3467788886654 458999999999999886543320 000112333
Q ss_pred cccceeEEEeecCCCceEEEe----ecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287 112 EEKINKIRWCQSANSALYLLS----TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (513)
Q Consensus 112 ~~~i~~i~~~~~~~~~~l~s~----s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 187 (513)
...++++|++- |.+.|+.| -.|-.+.|||+.++-........
T Consensus 103 -r~Ct~lAwneL-Dtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~-------------------------------- 148 (783)
T KOG1008|consen 103 -RPCTSLAWNEL-DTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPL-------------------------------- 148 (783)
T ss_pred -ccccccccccc-cHHHHHhhhhhhcccCCccceecccccCCCccccc--------------------------------
Confidence 77999999753 44566665 23667999999876321110000
Q ss_pred cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcce
Q 010287 188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 266 (513)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~ 266 (513)
+++ +......+++|..+.+.+.+| ....+.++|++.....
T Consensus 149 -----------fs~----------------------------~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~ 189 (783)
T KOG1008|consen 149 -----------FSS----------------------------STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS 189 (783)
T ss_pred -----------ccc----------------------------ccccCccccccccCcchhhcccccchhhhhhhhhhhhh
Confidence 100 011234578888888888888 6889999999833211
Q ss_pred eeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE-cCCcccccccceeeccccCCCCccccccccccEEE
Q 010287 267 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID-MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 345 (513)
Q Consensus 267 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 345 (513)
.. .-.+..+..+...|-.++++++- .||.|-+|| .++-+ .++......+.+.+ ..+..
T Consensus 190 ~~---------svnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnie---npl~~i~~~~N~~~--------~~l~~ 248 (783)
T KOG1008|consen 190 VS---------SVNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIE---NPLQIILRNENKKP--------KQLFA 248 (783)
T ss_pred hh---------hhhhhhcccceecCCCCCceecc-ccCceeeccchhhhc---cHHHHHhhCCCCcc--------cceee
Confidence 11 11233566777888444666654 499999999 33322 11222221111111 25889
Q ss_pred EEEeecC-CEEEEE-eC-CeEEEEEccC
Q 010287 346 IKFARNG-RHILSR-DY-MTLKLWDINM 370 (513)
Q Consensus 346 i~~sp~~-~~l~~~-~~-~~v~iwd~~~ 370 (513)
++|+|.. ..+++. .+ ++|++||+..
T Consensus 249 ~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 249 LAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred EEeccCCcchhhhhccCcceEEEecccc
Confidence 9999943 334443 34 9999999874
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.00014 Score=70.02 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=98.2
Q ss_pred ccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCC----CCeEEEEEeCCCcEEEEEcCCcc
Q 010287 241 NSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT----HCNMLAYSSSKGSIRLIDMRQSA 315 (513)
Q Consensus 241 ~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~ 315 (513)
.-+|+++++| .||+|.|-.+-+.+...+ .....++.+++++|+ ..+.+++|+..| +.++.-+--.
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~---------~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg 149 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQ---------YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG 149 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCcccee---------EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence 3469999999 799999998887665432 224678999999998 226899999999 7776533211
Q ss_pred cccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccC
Q 010287 316 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND 395 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (513)
.. ... .+..-.++|.++.|. |.++|=++|-.|++||+.. ++.+..++.....+. .+.+.
T Consensus 150 nk---~~v-----------~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~-~~~l~~i~~p~~~~R--~e~fp-- 208 (846)
T KOG2066|consen 150 NK---DSV-----------VLSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPT-RQRLTNIPPPSQSVR--PELFP-- 208 (846)
T ss_pred Cc---cce-----------eeecCccceEEEEec--CcEEEEecCCCcEEEeccc-cceeeccCCCCCCCC--cccCC--
Confidence 10 000 122334789999996 7899988886799999986 665555544332211 11111
Q ss_pred CccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287 396 SIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 427 (513)
Q Consensus 396 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 427 (513)
..+.|.++.+. +.|-.| +|+|..++
T Consensus 209 -----phl~W~~~~~L-VIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 209 -----PHLHWQDEDRL-VIGWGD-SVKICSIK 233 (846)
T ss_pred -----CceEecCCCeE-EEecCC-eEEEEEEe
Confidence 16788877654 444443 68888877
No 319
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.18 E-value=0.00053 Score=65.09 Aligned_cols=137 Identities=9% Similarity=-0.002 Sum_probs=77.7
Q ss_pred CCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccce
Q 010287 243 DGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 322 (513)
Q Consensus 243 ~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 322 (513)
++..++.+.++.+..+|..+++...+. .+. ....+.. .+ ..++.++.+|.+..+|..+++...+...
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~------~~~----~~~~~~~--~~-~~vy~~~~~g~l~ald~~tG~~~W~~~~ 322 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKR------EYG----SVNDFAV--DG-GRIYLVDQNDRVYALDTRGGVELWSQSD 322 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEee------cCC----CccCcEE--EC-CEEEEEcCCCeEEEEECCCCcEEEcccc
Confidence 344444447899999999988765542 111 1112222 23 4667778899999999998875432110
Q ss_pred eeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCcccee
Q 010287 323 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 401 (513)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (513)
... ....+... .+..++.++ +|.|.+.|..+ ++.+........... .
T Consensus 323 -~~~--------------~~~~sp~v--~~g~l~v~~~~G~l~~ld~~t-G~~~~~~~~~~~~~~--------------s 370 (394)
T PRK11138 323 -LLH--------------RLLTAPVL--YNGYLVVGDSEGYLHWINRED-GRFVAQQKVDSSGFL--------------S 370 (394)
T ss_pred -cCC--------------CcccCCEE--ECCEEEEEeCCCEEEEEECCC-CCEEEEEEcCCCcce--------------e
Confidence 000 00111111 244555555 59999999986 777666544321100 0
Q ss_pred eEEEeCCCCEEEEEeCCCcEEEEec
Q 010287 402 ECCLSGDGGRVATGSYSNLFRVFGC 426 (513)
Q Consensus 402 ~~~~s~~~~~l~~~~~dg~i~vwd~ 426 (513)
...+ .+..|+.++.||.|+.+++
T Consensus 371 ~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 371 EPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEE--ECCEEEEEeCCceEEEEeC
Confidence 1122 2447888899999988764
No 320
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.11 E-value=0.00061 Score=64.97 Aligned_cols=124 Identities=14% Similarity=0.182 Sum_probs=85.0
Q ss_pred cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccc
Q 010287 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (513)
Q Consensus 33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (513)
.|...|.--+++..+++++.|+.-|.+++|+..+++.. .....+-+
T Consensus 31 ~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~----------------------~~~~~~~~------------ 76 (726)
T KOG3621|consen 31 FFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR----------------------KLKNEGAT------------ 76 (726)
T ss_pred cCcceEEEEEeecCCceEEEecccceEEEEecCchhhh----------------------cccccCcc------------
Confidence 45667777778888999999999999999998877642 01111211
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
..+..+..+ .+..+++.|+..|.|.++.+..+..... .+
T Consensus 77 ~~~~~~~vs--~~e~lvAagt~~g~V~v~ql~~~~p~~~-~~-------------------------------------- 115 (726)
T KOG3621|consen 77 GITCVRSVS--SVEYLVAAGTASGRVSVFQLNKELPRDL-DY-------------------------------------- 115 (726)
T ss_pred ceEEEEEec--chhHhhhhhcCCceEEeehhhccCCCcc-ee--------------------------------------
Confidence 334445553 3555777778888898888776321100 00
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCC
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 262 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~ 262 (513)
++ ..-..|...|++++|++++..+++| +.|+|..-.+..
T Consensus 116 ------~t-------------------------~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 116 ------VT-------------------------PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ------ec-------------------------cccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 00 0013477889999999999999999 699999888875
No 321
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.08 E-value=0.0069 Score=56.45 Aligned_cols=251 Identities=9% Similarity=0.053 Sum_probs=115.5
Q ss_pred CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeec-ccCccccccc---------cCCeEEEEEeCCCCeEEEEEe-
Q 010287 233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIV-DVKPANMEDL---------TEVITSAEFHPTHCNMLAYSS- 301 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~---------~~~i~~~~~~~~~~~~l~~~~- 301 (513)
..+....|+|+|+.++...++.|.+++..++. ..++. +.....+.+- -+.-..+-|+||+ +.|+...
T Consensus 43 ~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~-~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~-~~la~~~~ 120 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQ-ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDS-KYLAFLRF 120 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEETTEEEEESSTTSE-EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTS-SEEEEEEE
T ss_pred cccccceeecCCCeeEEEecCceEEEECCCCC-eEEeccccceeEEcCccceeccccccccccceEECCCC-CEEEEEEE
Confidence 34677889999999999988999999887553 22221 1000000000 1223568899999 5555544
Q ss_pred CCCcEEEEEcCCccccc------c--------------cceeeccccCCCCc-c---ccccccccEEEEEEeecCC-EEE
Q 010287 302 SKGSIRLIDMRQSALCD------T--------------HSKLFEEQEAPGTR-S---FFTEIIASISDIKFARNGR-HIL 356 (513)
Q Consensus 302 ~dg~i~vwd~~~~~~~~------~--------------~~~~~~~~~~~~~~-~---~~~~~~~~v~~i~~sp~~~-~l~ 356 (513)
.+..|+.+.+....... . .+..++........ . .+..-...+..+.|.++++ +++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 44555544332111000 0 00111111110000 0 0112245788999999998 444
Q ss_pred E-Ee-C---CeEEEEEccCCCCCeeeee-cccccccccccccccCCccceeeEEEe-CCCC-EEEEEeCCCcEEEEecCC
Q 010287 357 S-RD-Y---MTLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLS-GDGG-RVATGSYSNLFRVFGCSE 428 (513)
Q Consensus 357 ~-~~-~---~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~-~l~~~~~dg~i~vwd~~~ 428 (513)
. .+ + ..+.++|..+ +....... .....+.. -....|. +++. +|.....||.-+||-+..
T Consensus 201 ~~~nR~q~~~~l~~~d~~t-g~~~~~~~e~~~~Wv~~------------~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~ 267 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDAST-GETRVVLEETSDGWVDV------------YDPPHFLGPDGNEFLWISERDGYRHLYLYDL 267 (353)
T ss_dssp EEEETTSTEEEEEEEEECT-TTCEEEEEEESSSSSSS------------SSEEEE-TTTSSEEEEEEETTSSEEEEEEET
T ss_pred EEcccCCCEEEEEEEECCC-CceeEEEEecCCcceee------------ecccccccCCCCEEEEEEEcCCCcEEEEEcc
Confidence 3 22 2 4556667664 33322221 11222110 0145554 5555 444555777655554443
Q ss_pred CCccceeecCCCCceeE-EEEcCCCCcee-eecC----CCeEEEecCC-CCCccccCCccccccCCe-eEEEEeCCCCEE
Q 010287 429 GSAESTTLEASKNPMRR-QVQTPSRPSRP-LGSL----SGVVRRVKGA-DNSALDANGNAFDFSMKL-LHLAWHPSENSI 500 (513)
Q Consensus 429 ~~~~~~~~~~~~~~v~~-~~~~~~~~~l~-~~~~----d~~i~~~~~~-~~~~~~~~~~~~~~~~~i-~~~~~sp~~~~l 500 (513)
.......+......|.. +.+.++++.+. ++.. ...+..+... ... ..++...... ..++|||+++++
T Consensus 268 ~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~-----~~~LT~~~~~~~~~~~Spdg~y~ 342 (353)
T PF00930_consen 268 DGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE-----PKCLTCEDGDHYSASFSPDGKYY 342 (353)
T ss_dssp TSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE-----EEESSTTSSTTEEEEE-TTSSEE
T ss_pred cccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC-----eEeccCCCCCceEEEECCCCCEE
Confidence 33333344444555644 56677766543 3333 2233332112 111 0111122222 599999999998
Q ss_pred EEE
Q 010287 501 ACA 503 (513)
Q Consensus 501 a~~ 503 (513)
+..
T Consensus 343 v~~ 345 (353)
T PF00930_consen 343 VDT 345 (353)
T ss_dssp EEE
T ss_pred EEE
Confidence 843
No 322
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.07 E-value=0.00041 Score=64.99 Aligned_cols=71 Identities=13% Similarity=0.107 Sum_probs=55.1
Q ss_pred ccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC
Q 010287 341 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 419 (513)
Q Consensus 341 ~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 419 (513)
+.+.+++++|+...++.|. ||.|.+||... + +.......-. .+.++|+|+|.++++|+..|
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-~--~t~~~ka~~~---------------P~~iaWHp~gai~~V~s~qG 321 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTR-G--VTLLAKAEFI---------------PTLIAWHPDGAIFVVGSEQG 321 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCC-C--eeeeeeeccc---------------ceEEEEcCCCcEEEEEcCCc
Confidence 6799999999998888866 69999999874 2 1111111111 23799999999999999999
Q ss_pred cEEEEecCCC
Q 010287 420 LFRVFGCSEG 429 (513)
Q Consensus 420 ~i~vwd~~~~ 429 (513)
.+.+||+.-.
T Consensus 322 elQ~FD~ALs 331 (545)
T PF11768_consen 322 ELQCFDMALS 331 (545)
T ss_pred eEEEEEeecC
Confidence 9999998865
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.0019 Score=63.15 Aligned_cols=156 Identities=8% Similarity=0.073 Sum_probs=91.2
Q ss_pred CCEEEE-E-cCC----eEEEEEcCCCcc-----eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287 244 GETFIS-A-DDL----RINLWNLEISNQ-----SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 312 (513)
Q Consensus 244 ~~~l~s-~-~d~----~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 312 (513)
..+|++ | +++ .+++|+++..+. +.....+-+........++.+++.+.+- +.+|.|-.+|.|..+.-.
T Consensus 77 ~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GD 155 (933)
T KOG2114|consen 77 QNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGD 155 (933)
T ss_pred ceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCc
Confidence 345555 4 333 699999975421 1100011111222346778899999987 899999999999988532
Q ss_pred CcccccccceeeccccCCCCccccccccccEEEEEEeecCCE-EEEEeCCeEEEEEccCCCCCe-eeeeccccccccccc
Q 010287 313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH-ILSRDYMTLKLWDINMDSGPV-ATFQVHEHLRPKLCD 390 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-l~~~~~~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~ 390 (513)
-.+. +..+.-- ......+|+.+.+..+++. +++++-..|.+|.+.. ..+. ..+..+...
T Consensus 156 i~RD--rgsr~~~----------~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~p~~~~ld~~G~~------ 216 (933)
T KOG2114|consen 156 ILRD--RGSRQDY----------SHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-RTPSLKVLDNNGIS------ 216 (933)
T ss_pred chhc--cccceee----------eccCCCCceeeEEecCCceeEEEEecceeEEEEecC-CCcceeeeccCCcc------
Confidence 1111 0011111 1112368999999988876 4555557899999984 3332 334433332
Q ss_pred ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
+.+..+++....+++++. ..+.+|+....
T Consensus 217 ---------lnCss~~~~t~qfIca~~-e~l~fY~sd~~ 245 (933)
T KOG2114|consen 217 ---------LNCSSFSDGTYQFICAGS-EFLYFYDSDGR 245 (933)
T ss_pred ---------ceeeecCCCCccEEEecC-ceEEEEcCCCc
Confidence 236667765554555554 46999998743
No 324
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.04 E-value=0.00013 Score=71.30 Aligned_cols=180 Identities=16% Similarity=0.152 Sum_probs=118.5
Q ss_pred eEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCC
Q 010287 295 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG 373 (513)
Q Consensus 295 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~ 373 (513)
..++.|+....+..+|+++.+.. +...... +.+.-+ ..+++++.+|+. |+|.+-|.++ .+
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~----r~~~v~a------------~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s-~~ 208 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKET----RTTNVSA------------SGVTIM--RYNNRNLFCGDTRGTVFLRDPNS-FE 208 (1118)
T ss_pred cceeecchhhheeeeecccceee----eeeeccC------------CceEEE--EecCcEEEeecccceEEeecCCc-Cc
Confidence 56777888888999999886642 2211111 123333 347899999987 9999999997 89
Q ss_pred CeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC---------CCcEEEEecCCCCccceeecCCCCcee
Q 010287 374 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY---------SNLFRVFGCSEGSAESTTLEASKNPMR 444 (513)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~v~ 444 (513)
.++++..|.+. -.+|+-.|+.|++++. |..|+|||++.... +..+..+..| .
T Consensus 209 ~iht~~aHs~s-----------------iSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-l~PI~~~~~P-~ 269 (1118)
T KOG1275|consen 209 TIHTFDAHSGS-----------------ISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-LSPIQFPYGP-Q 269 (1118)
T ss_pred eeeeeeccccc-----------------eeeeeccCCeEEEeecccccccccccchhhhhhhhhhhc-cCCcccccCc-h
Confidence 99999999976 3467888999998875 45678999986532 2333333333 2
Q ss_pred EEEEcCCC-CceeeecCCCeEEEecCCCCCccccCCccc-cccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 445 RQVQTPSR-PSRPLGSLSGVVRRVKGADNSALDANGNAF-DFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 445 ~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
-+.|.|.- ..++.++..|...+.+.............. ..+..|..+.+|+.++.||.+. ++.+-+|.
T Consensus 270 flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 270 FLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred hhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 34455543 346677778888873322122111111111 2245599999999999999887 66677763
No 325
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.04 E-value=1.9e-06 Score=80.26 Aligned_cols=166 Identities=14% Similarity=0.168 Sum_probs=107.1
Q ss_pred ccccCCeEEEEecc-CCCEEEEE-c----CCeEEEEEcCCCcce-eeecccCcccccc-ccCCeEEEEEeCCCCeEEEEE
Q 010287 229 HAHDYHINSISNNS-DGETFISA-D----DLRINLWNLEISNQS-FNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYS 300 (513)
Q Consensus 229 ~~h~~~v~~~~~~~-~~~~l~s~-~----d~~i~vwd~~~~~~~-~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~ 300 (513)
.+|....++++|++ |.+.|+.| + |..+.|||+.+.-.. .+. ..+.+ ......+++|..+. +++.+|
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~-----~~fs~~~l~gqns~cwlrd~-klvlaG 172 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKES-----PLFSSSTLDGQNSVCWLRDT-KLVLAG 172 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccc-----cccccccccCccccccccCc-chhhcc
Confidence 45556688999998 67788887 2 788999999865211 110 01111 33445688999776 889999
Q ss_pred eCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEeCCeEEEEE-ccCCCCCeeee
Q 010287 301 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDYMTLKLWD-INMDSGPVATF 378 (513)
Q Consensus 301 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~~~v~iwd-~~~~~~~~~~~ 378 (513)
...+.+.++|+|....... .+.. ..+..+..+| .+.++++..+|.|.+|| .+.-..++..+
T Consensus 173 m~sr~~~ifdlRqs~~~~~---svnT--------------k~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i 235 (783)
T KOG1008|consen 173 MTSRSVHIFDLRQSLDSVS---SVNT--------------KYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQII 235 (783)
T ss_pred cccchhhhhhhhhhhhhhh---hhhh--------------hhcccceecCCCCCceeccccCceeeccchhhhccHHHHH
Confidence 9999999999985322111 1110 2467788889 88899988899999999 43323344443
Q ss_pred ecccccccccccccccCCccceeeEEEeCCCC-EEEEEe-CCCcEEEEecCC
Q 010287 379 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGS-YSNLFRVFGCSE 428 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~vwd~~~ 428 (513)
........ ..++.++|.|... .+++.+ +.+.|++|++..
T Consensus 236 ~~~~N~~~-----------~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 236 LRNENKKP-----------KQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred hhCCCCcc-----------cceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 33322111 1145899998543 444444 567899999864
No 326
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.02 E-value=0.0042 Score=53.67 Aligned_cols=174 Identities=15% Similarity=0.191 Sum_probs=81.7
Q ss_pred CeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCc--ccc-ccccCCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 010287 234 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP--ANM-EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 309 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~--~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vw 309 (513)
..-.|++..++.++++. .++.+.++++.........-+.+. ..+ ..+...+-.++|+|.+ +.|+.+-+..-..+|
T Consensus 66 D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l~ 144 (248)
T PF06977_consen 66 DYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRLY 144 (248)
T ss_dssp SEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTT-TEEEEEEESSSEEEE
T ss_pred CceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhhE
Confidence 36678888888777777 599999998854332211110000 011 2345668999999987 555556677667777
Q ss_pred EcCC--cccccccceeeccccCCCCccccccccccEEEEEEeecC-CEEEEEeC-CeEEEEEccCCCCCeeeeecccccc
Q 010287 310 DMRQ--SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR 385 (513)
Q Consensus 310 d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~ 385 (513)
.++. ...... ......... .......+.+++++|.. ++++..+. ..|..+|.. ++++..+.......
T Consensus 145 ~~~~~~~~~~~~-~~~~~~~~~------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~~L~~g~~ 215 (248)
T PF06977_consen 145 EVNGFPGGFDLF-VSDDQDLDD------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--GRVVSSLSLDRGFH 215 (248)
T ss_dssp EEESTT-SS--E-EEE-HHHH-------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGG
T ss_pred EEccccCcccee-ecccccccc------ccceeccccceEEcCCCCeEEEEECCCCeEEEECCC--CCEEEEEEeCCccc
Confidence 7654 110000 000000000 01122457889999954 45555554 889899954 77777665544211
Q ss_pred cccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEE
Q 010287 386 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 424 (513)
Q Consensus 386 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 424 (513)
.-...+.+ --.++|.++|++.++ +.-+.+++|
T Consensus 216 gl~~~~~Q------pEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 216 GLSKDIPQ------PEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp G-SS---S------EEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred CcccccCC------ccEEEECCCCCEEEE-cCCceEEEe
Confidence 10001111 127999999965554 556666655
No 327
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.96 E-value=0.00023 Score=69.62 Aligned_cols=118 Identities=19% Similarity=0.263 Sum_probs=77.4
Q ss_pred eccccCCeEEEEeccCCCEEEEE--c--------CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEE
Q 010287 228 AHAHDYHINSISNNSDGETFISA--D--------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML 297 (513)
Q Consensus 228 ~~~h~~~v~~~~~~~~~~~l~s~--~--------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 297 (513)
+.+|.+.|.++. -.|+.|+++ + |.-|+|||++..+.+.. +.-+.+ ..-+.|+|.-...+
T Consensus 213 ~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P--------I~~~~~-P~flrf~Psl~t~~ 281 (1118)
T KOG1275|consen 213 FDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP--------IQFPYG-PQFLRFHPSLTTRL 281 (1118)
T ss_pred eeccccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCC--------cccccC-chhhhhcccccceE
Confidence 357777776544 457777774 2 34588999986654432 222222 25677888877889
Q ss_pred EEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEc
Q 010287 298 AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDI 368 (513)
Q Consensus 298 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~ 368 (513)
+.++..|...+-|..+-......+..+.. ....+..+++|+++..++.|+. |.|.+|.-
T Consensus 282 ~V~S~sGq~q~vd~~~lsNP~~~~~~v~p------------~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 282 AVTSQSGQFQFVDTATLSNPPAGVKMVNP------------NGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred EEEecccceeeccccccCCCccceeEEcc------------CCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 99999999999984332111000111111 1145899999999999999986 99999983
No 328
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.94 E-value=0.0056 Score=52.88 Aligned_cols=128 Identities=10% Similarity=0.147 Sum_probs=63.5
Q ss_pred ccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCC--CcceeeecccCc-cccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287 231 HDYHINSISNNSDGETFISA-DDLRINLWNLEI--SNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 306 (513)
Q Consensus 231 h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~--~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 306 (513)
++..+-.++|++.++.|+.+ ......++.+.. ............ .........+.+++++|..+.+++.+..+..+
T Consensus 116 ~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l 195 (248)
T PF06977_consen 116 GNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLL 195 (248)
T ss_dssp -SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEE
T ss_pred CCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeE
Confidence 44558899999988888877 566666666653 111111110000 00122344578999999877888888889999
Q ss_pred EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEE
Q 010287 307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLW 366 (513)
Q Consensus 307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iw 366 (513)
..+| ..|+.. ..+...... .-+.......-.|+|.++|.+.+++.-+..++|
T Consensus 196 ~~~d-~~G~~~----~~~~L~~g~---~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 196 LELD-RQGRVV----SSLSLDRGF---HGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp EEE--TT--EE----EEEE-STTG---GG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred EEEC-CCCCEE----EEEEeCCcc---cCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 9999 556542 111111100 000111135788999999977766543555544
No 329
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.93 E-value=0.0026 Score=55.77 Aligned_cols=143 Identities=11% Similarity=0.107 Sum_probs=81.6
Q ss_pred cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCC
Q 010287 251 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 330 (513)
Q Consensus 251 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 330 (513)
++|+|..||..+++...+. .+..-.....+.....+ ..+++++.++.+..||..+|+...+ ++.....
T Consensus 1 ~~g~l~~~d~~tG~~~W~~------~~~~~~~~~~~~~~~~~--~~v~~~~~~~~l~~~d~~tG~~~W~----~~~~~~~ 68 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSY------DLGPGIGGPVATAVPDG--GRVYVASGDGNLYALDAKTGKVLWR----FDLPGPI 68 (238)
T ss_dssp -TSEEEEEETTTTEEEEEE------ECSSSCSSEEETEEEET--TEEEEEETTSEEEEEETTTSEEEEE----EECSSCG
T ss_pred CCCEEEEEECCCCCEEEEE------ECCCCCCCccceEEEeC--CEEEEEcCCCEEEEEECCCCCEEEE----eeccccc
Confidence 3688999999888776653 12111122222233233 4566678999999999999986432 2221100
Q ss_pred CCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeee-ecccccccccccccccCCccceeeEEEeCCC
Q 010287 331 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATF-QVHEHLRPKLCDLYENDSIFDKFECCLSGDG 409 (513)
Q Consensus 331 ~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 409 (513)
... ....++..++...++.+..+|..+ ++.+... ........ . ........++
T Consensus 69 ---------~~~----~~~~~~~v~v~~~~~~l~~~d~~t-G~~~W~~~~~~~~~~~----------~--~~~~~~~~~~ 122 (238)
T PF13360_consen 69 ---------SGA----PVVDGGRVYVGTSDGSLYALDAKT-GKVLWSIYLTSSPPAG----------V--RSSSSPAVDG 122 (238)
T ss_dssp ---------GSG----EEEETTEEEEEETTSEEEEEETTT-SCEEEEEEE-SSCTCS----------T--B--SEEEEET
T ss_pred ---------cce----eeecccccccccceeeeEecccCC-cceeeeeccccccccc----------c--ccccCceEec
Confidence 011 122244444444458999999886 7776653 32211100 0 0022233337
Q ss_pred CEEEEEeCCCcEEEEecCCCCc
Q 010287 410 GRVATGSYSNLFRVFGCSEGSA 431 (513)
Q Consensus 410 ~~l~~~~~dg~i~vwd~~~~~~ 431 (513)
..++.+..++.|..+|+++++.
T Consensus 123 ~~~~~~~~~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 123 DRLYVGTSSGKLVALDPKTGKL 144 (238)
T ss_dssp TEEEEEETCSEEEEEETTTTEE
T ss_pred CEEEEEeccCcEEEEecCCCcE
Confidence 7888888899999999999844
No 330
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.92 E-value=0.00043 Score=65.11 Aligned_cols=184 Identities=15% Similarity=0.131 Sum_probs=106.8
Q ss_pred cCCeEEEEeccCCCEEEEE--c-C--CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287 232 DYHINSISNNSDGETFISA--D-D--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 306 (513)
Q Consensus 232 ~~~v~~~~~~~~~~~l~s~--~-d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 306 (513)
...+..-+|+|+++.++.- . . ..+.++++++++....+ .+. ..-...+|+|||.+++++...||..
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~------~~~---g~~~~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL------NFN---GNNGAPAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee------ccC---CccCCccCCCCCCEEEEEECCCCCc
Confidence 3446677899999887754 2 3 35999999977654321 222 3334678999997777777778865
Q ss_pred E--EEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeeccc
Q 010287 307 R--LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHE 382 (513)
Q Consensus 307 ~--vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~ 382 (513)
. ++|+.++.... +.... +.-..=.|+|||+.|+-.+| |.-.||-+..++.....+....
T Consensus 263 ~iy~~dl~~~~~~~--Lt~~~---------------gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~ 325 (425)
T COG0823 263 DIYLMDLDGKNLPR--LTNGF---------------GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG 325 (425)
T ss_pred cEEEEcCCCCccee--cccCC---------------ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC
Confidence 4 55666554211 11111 11224568999999997665 5555555444355445554433
Q ss_pred ccccccccccccCCccceeeEEEeCCCCEEEEEeC-CCc--EEEEecCCCCccceeecCCCCceeEEEEcCCCCceeee
Q 010287 383 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNL--FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 458 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 458 (513)
.... .-.|+|||++|+..+. +|. |.+.++.++... ..+ ..........+.++++.+...
T Consensus 326 ~~~~---------------~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~-~~l-t~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 326 GGNS---------------NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKI-RIL-TSTYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred CCCc---------------CccCCCCCCEEEEEeccCCceeeEEeccCCCCcE-EEc-cccccCCCCCcCCCCceEEEe
Confidence 3211 4579999999986663 344 666677665421 111 111122234556666655443
No 331
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.92 E-value=0.0082 Score=56.92 Aligned_cols=217 Identities=12% Similarity=0.089 Sum_probs=111.3
Q ss_pred cCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287 232 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 311 (513)
Q Consensus 232 ~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~ 311 (513)
......+.++|+++.++.+++|.-.++.....+. ...+.-..+.|.+.+ .+|+-...+.|.++.-
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~-------------k~~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn 96 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRN-------------KAFGSGLSFVWSSRN--RYAVLESSSTIKIYKN 96 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEE-------------EEEEE-SEEEE-TSS--EEEEE-TTS-EEEEET
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcc-------------cccCceeEEEEecCc--cEEEEECCCeEEEEEc
Confidence 3447889999999999999999999998432221 113445678899954 5777777899999632
Q ss_pred CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccc
Q 010287 312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 391 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
-.... .+.++.+ ..+..|-. |.+|...+++.|.+||..+ ++.+..+....
T Consensus 97 ~~~~~----~k~i~~~-------------~~~~~If~---G~LL~~~~~~~i~~yDw~~-~~~i~~i~v~~--------- 146 (443)
T PF04053_consen 97 FKNEV----VKSIKLP-------------FSVEKIFG---GNLLGVKSSDFICFYDWET-GKLIRRIDVSA--------- 146 (443)
T ss_dssp TEE-T----T-----S-------------S-EEEEE----SSSEEEEETTEEEEE-TTT---EEEEESS-E---------
T ss_pred Ccccc----ceEEcCC-------------cccceEEc---CcEEEEECCCCEEEEEhhH-cceeeEEecCC---------
Confidence 22211 1112211 11333322 8888888777899999997 88888876543
Q ss_pred cccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC---------Cc-cceeecCCCCceeEEEEcCCCCceeeecCC
Q 010287 392 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG---------SA-ESTTLEASKNPMRRQVQTPSRPSRPLGSLS 461 (513)
Q Consensus 392 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---------~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 461 (513)
|..+.|+++|++++..+.+ .+.+++.... -. ....+..-...|.+.+|..+ .++.....
T Consensus 147 --------vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~ 215 (443)
T PF04053_consen 147 --------VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN 215 (443)
T ss_dssp ---------EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT
T ss_pred --------CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC
Confidence 2379999999999988865 6777765422 00 12223222456667777655 33333223
Q ss_pred CeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEE
Q 010287 462 GVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMY 511 (513)
Q Consensus 462 ~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~ 511 (513)
.++...+++.. .......++.-+...|..+.|.... +.+++.+
T Consensus 216 -~lkYl~~Ge~~------~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 216 -HLKYLVNGETG------IIAHLDKPLYLLGYLPKENRLYLIDRDGNVISY 259 (443)
T ss_dssp -EEEEEETTEEE------EEEE-SS--EEEEEETTTTEEEEE-TT--EEEE
T ss_pred -eEEEEEcCCcc------eEEEcCCceEEEEEEccCCEEEEEECCCCEEEE
Confidence 33331111111 1111245677777777666665443 4455443
No 332
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.91 E-value=0.00031 Score=68.24 Aligned_cols=105 Identities=15% Similarity=0.242 Sum_probs=77.5
Q ss_pred EEeccCCCEEEEE-----cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287 238 ISNNSDGETFISA-----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 312 (513)
Q Consensus 238 ~~~~~~~~~l~s~-----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 312 (513)
..|+|...+|+++ ..|.|.||- ++++....+ +. .-.+++++|+|.. -+|+.|-.-|.+.+|...
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V------t~---P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~~ 89 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV------TY---PVHATSLCWHPEE-FVLAQGWEMGVSDVQKTN 89 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc------cc---ceehhhhccChHH-HHHhhccccceeEEEecC
Confidence 5689988888875 278888884 334432211 11 2335679999997 788888889999999876
Q ss_pred CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEcc
Q 010287 313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDIN 369 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~ 369 (513)
+.+. .+. ...|..+|..+.|||+|..+++++. |.|.+|...
T Consensus 90 ~~e~-----htv-----------~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 90 TTET-----HTV-----------VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred Ccee-----eee-----------ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5442 111 2346688999999999999999998 999999876
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.87 E-value=0.001 Score=64.12 Aligned_cols=109 Identities=9% Similarity=0.065 Sum_probs=70.5
Q ss_pred ccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCC------------eeeeecccccccccccccccCCccceeeEEEe
Q 010287 341 ASISDIKFARNGRHILSRDY--MTLKLWDINMDSGP------------VATFQVHEHLRPKLCDLYENDSIFDKFECCLS 406 (513)
Q Consensus 341 ~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 406 (513)
.....+.++|||+++++++. .+|.|+|+.. .+. +.....-..+ ...+|.
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k-~k~~~~~~~~~~~~vvaevevGlGP----------------LHTaFD 383 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK-LDDLFDGKIKPRDAVVAEPELGLGP----------------LHTAFD 383 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChh-hhhhhhccCCccceEEEeeccCCCc----------------ceEEEC
Confidence 35688999999999998764 9999999986 221 1111111111 157899
Q ss_pred CCCCEEEEEeCCCcEEEEecCCC------C---ccceeecCCCCcee-----EEEEcCCCCceeeec---CCCeEEE
Q 010287 407 GDGGRVATGSYSNLFRVFGCSEG------S---AESTTLEASKNPMR-----RQVQTPSRPSRPLGS---LSGVVRR 466 (513)
Q Consensus 407 ~~~~~l~~~~~dg~i~vwd~~~~------~---~~~~~~~~~~~~v~-----~~~~~~~~~~l~~~~---~d~~i~~ 466 (513)
++|+...+-..|..|..|++... . .++..+..|-.+-. .-.-.|+|+||++.. .|+.+-+
T Consensus 384 g~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~v 460 (635)
T PRK02888 384 GRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPV 460 (635)
T ss_pred CCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccCC
Confidence 99988888889999999998862 1 23333444443332 223478999998863 3444443
No 334
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.87 E-value=0.00079 Score=63.40 Aligned_cols=186 Identities=14% Similarity=0.115 Sum_probs=103.0
Q ss_pred cCCeEEEEEeCCCCeEEEEEeCC---CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEE
Q 010287 281 TEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 357 (513)
Q Consensus 281 ~~~i~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~ 357 (513)
...+..-.|+|++..+....-.. ..+.++|+.++.... +..+. +.-..-+|+|||+.|+-
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~--i~~~~---------------g~~~~P~fspDG~~l~f 254 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV--ILNFN---------------GNNGAPAFSPDGSKLAF 254 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce--eeccC---------------CccCCccCCCCCCEEEE
Confidence 45567788999984433332222 358889988876421 11122 22344679999998886
Q ss_pred Ee--C--CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe-CCCc--EEEEecCCCC
Q 010287 358 RD--Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNL--FRVFGCSEGS 430 (513)
Q Consensus 358 ~~--~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~--i~vwd~~~~~ 430 (513)
.. + -.|+++|+.. +....+....... +.-.|+|||++|+-.+ ..|. |.+++++...
T Consensus 255 ~~~rdg~~~iy~~dl~~--~~~~~Lt~~~gi~---------------~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 255 SSSRDGSPDIYLMDLDG--KNLPRLTNGFGIN---------------TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred EECCCCCccEEEEcCCC--CcceecccCCccc---------------cCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence 43 2 4566667764 3333333222211 1467999999988555 4454 5566666554
Q ss_pred ccceeecCCCCceeEEEEcCCCCceeeecCC-CeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc
Q 010287 431 AESTTLEASKNPMRRQVQTPSRPSRPLGSLS-GVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 504 (513)
Q Consensus 431 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 504 (513)
....+....... .-.++|+|++++..+.. |...+.. ..+..... ...+........-.|.|+++.+...+
T Consensus 318 ~~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~-~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 318 VTRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDK-NDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred eeEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEE-eccCCCCc-EEEccccccCCCCCcCCCCceEEEec
Confidence 433444433333 77899999999887643 4433300 11100000 11222334455667788887766443
No 335
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.85 E-value=0.0041 Score=62.35 Aligned_cols=144 Identities=15% Similarity=0.131 Sum_probs=88.3
Q ss_pred eEEEEE-eCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee------cCCEEEEEeCCeEEEEE
Q 010287 295 NMLAYS-SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR------NGRHILSRDYMTLKLWD 367 (513)
Q Consensus 295 ~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp------~~~~l~~~~~~~v~iwd 367 (513)
++|+.. .....+.-.|+..|+. +..|+.+.. .+|..++-.. ..+.++.-++..+..||
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKV----V~eW~~~~~-----------~~v~~~~p~~K~aqlt~e~tflGls~n~lfriD 558 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKV----VEEWKVHDD-----------IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRID 558 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcE----EEEeecCCC-----------cceeEecccccccccCCCceEEEECCCceEEec
Confidence 444443 3457888899999887 555665542 2244433211 12334444558999999
Q ss_pred ccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEE
Q 010287 368 INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQV 447 (513)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 447 (513)
.+..+..+..-..+... .. ....+++-+.+| +||+|+.+|.||+||- .+..-...+.+-..||..+.
T Consensus 559 pR~~~~k~v~~~~k~Y~---------~~--~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iD 625 (794)
T PF08553_consen 559 PRLSGNKLVDSQSKQYS---------SK--NNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGID 625 (794)
T ss_pred cCCCCCceeeccccccc---------cC--CCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEE
Confidence 98644222211122111 00 012356666555 7899999999999994 34344466778889999999
Q ss_pred EcCCCCceeeecCCCeEEE
Q 010287 448 QTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 448 ~~~~~~~l~~~~~d~~i~~ 466 (513)
++.||+|++.-+..-.+-+
T Consensus 626 vt~DGkwilaTc~tyLlLi 644 (794)
T PF08553_consen 626 VTADGKWILATCKTYLLLI 644 (794)
T ss_pred ecCCCcEEEEeecceEEEE
Confidence 9999999876654444443
No 336
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.84 E-value=0.0055 Score=55.63 Aligned_cols=105 Identities=10% Similarity=0.049 Sum_probs=50.9
Q ss_pred ccEEEEEEeec-CCEEEEEeC---Ce--EEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEE
Q 010287 341 ASISDIKFARN-GRHILSRDY---MT--LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 414 (513)
Q Consensus 341 ~~v~~i~~sp~-~~~l~~~~~---~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 414 (513)
..+..+.|||. ..+|.-|.+ .. -+||-++..+.....+..+..... +.-=-|.|||..|.-
T Consensus 188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~-------------~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGES-------------VGHEFWVPDGSTIWY 254 (386)
T ss_dssp S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEE-------------EEEEEE-TTSS-EEE
T ss_pred ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcc-------------cccccccCCCCEEEE
Confidence 57888999994 445554543 23 378888776666555544332110 123358999987653
Q ss_pred E-----eCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCC
Q 010287 415 G-----SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 461 (513)
Q Consensus 415 ~-----~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 461 (513)
- +.+..|.-+|+.++.... .. ...+...+..++++++++--+.|
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~-~~--~~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRR-LM--EMPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEE-EE--EE-SEEEEEE-TTSSEEEEEE--
T ss_pred EeecCCCCceEEEeeCCCCCCceE-EE--eCCceeeeEEcCCCCEEEecCCC
Confidence 2 224456777888774332 11 11234467778899888765554
No 337
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=3.3e-05 Score=75.07 Aligned_cols=145 Identities=18% Similarity=0.212 Sum_probs=107.2
Q ss_pred ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEE
Q 010287 276 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 355 (513)
Q Consensus 276 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l 355 (513)
.+..|....+|++|+.+. +.|+.|+..|.|++|++.+|..... ...|.+.|+.+.-+.+|..+
T Consensus 1096 ~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~e~s----------------~ncH~SavT~vePs~dgs~~ 1158 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSMEES----------------VNCHQSAVTLVEPSVDGSTQ 1158 (1516)
T ss_pred hhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCcccccc----------------ccccccccccccccCCccee
Confidence 566788899999999998 9999999999999999999875221 35566889999988899988
Q ss_pred EEEeC---CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc
Q 010287 356 LSRDY---MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 432 (513)
Q Consensus 356 ~~~~~---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 432 (513)
++.+. --..+|++...+.+.+++.... ++.|+.....-+.|+......+||+.++...
T Consensus 1159 Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed~-------------------~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1159 LTSSSSSSPLSALWDASSTGGPRHSFDEDK-------------------AVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred eeeccccCchHHHhccccccCccccccccc-------------------eeehhhhHHHHHhcccccceEEEecccCcHH
Confidence 87542 4678999987666666665433 6778876555556665567899999998655
Q ss_pred ceeecC---CCCceeEEEEcCCCCcee
Q 010287 433 STTLEA---SKNPMRRQVQTPSRPSRP 456 (513)
Q Consensus 433 ~~~~~~---~~~~v~~~~~~~~~~~l~ 456 (513)
...+.+ ....-+...|+|..+++.
T Consensus 1220 ~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1220 QTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HHhcCcchhhhhhccccccCCCcceEe
Confidence 433432 233345678888877765
No 338
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.77 E-value=0.018 Score=54.64 Aligned_cols=178 Identities=18% Similarity=0.129 Sum_probs=88.0
Q ss_pred eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCc
Q 010287 254 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 333 (513)
Q Consensus 254 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 333 (513)
.|.+|+.. ++...++ .+. .+.+.++.|+.+. .|+.-..||.+++||+.. .. .+........
T Consensus 62 ~I~iys~s-G~ll~~i------~w~--~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G-~~------~fsl~~~i~~- 122 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSI------PWD--SGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFG-EF------QFSLGEEIEE- 122 (410)
T ss_pred EEEEECCC-CCEeEEE------EEC--CCCEEEEEECCCC--eEEEEEcCCEEEEEeCCC-ce------eechhhhccc-
Confidence 58888876 4433322 222 3789999999875 555677999999999863 22 1111000000
Q ss_pred cccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCe--eeeeccccccccccc-ccccCCccceeeEEEeCCCC
Q 010287 334 SFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPV--ATFQVHEHLRPKLCD-LYENDSIFDKFECCLSGDGG 410 (513)
Q Consensus 334 ~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~ 410 (513)
..-....+....+..+|-.+++++ +.+.+. ....++. +.+. .. ..... ......... ...++.+..
T Consensus 123 --~~v~e~~i~~~~~~~~GivvLt~~-~~~~~v--~n~~~~~~~~~~~--~~--p~~~~~~~~~~~~~~--i~~l~~~~~ 191 (410)
T PF04841_consen 123 --EKVLECRIFAIWFYKNGIVVLTGN-NRFYVV--NNIDEPVKLRRLP--EI--PGLWTKFHWWPSWTV--IPLLSSDRV 191 (410)
T ss_pred --cCcccccccccccCCCCEEEECCC-CeEEEE--eCccccchhhccc--cC--CCccccccccccccc--ceEeecCcc
Confidence 000001122223333554444433 333332 2211111 1111 00 00000 000000000 123555666
Q ss_pred EEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 411 RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 411 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
..+....++.+.+.+-..... + ...+++..+++||+++++|.-..+|.+.+
T Consensus 192 ~~i~~~~g~~i~~i~~~~~~~----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v 242 (410)
T PF04841_consen 192 VEILLANGETIYIIDENSFKQ----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWV 242 (410)
T ss_pred eEEEEecCCEEEEEEcccccc----c-cCCCCeEEEEECCCCCEEEEEECCCCEEE
Confidence 555556666666444332211 1 12468999999999999999999999877
No 339
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.74 E-value=0.0098 Score=55.59 Aligned_cols=291 Identities=15% Similarity=0.157 Sum_probs=130.1
Q ss_pred cEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCC-Ccc-Cccccc--cccccCCC-cceEeccccC-C-CCcccccccc
Q 010287 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNG-GQR-RDLEMM--DYSMSRHP-EFRYKTEFQS-H-EPEFDYLKSL 109 (513)
Q Consensus 37 ~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~-~~~-~~~~~~--~~~~~~~~-~~~~~~~~~~-h-~~~~~~~~~~ 109 (513)
.|+.+.|+++..-||+|...|.|.||.+...+.-+ ... ..++.. .......+ .......... . +..|.++.-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58999999998889999999999999987654422 000 000000 00000000 0001110000 0 1123332222
Q ss_pred cc-cccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceec-----cCC
Q 010287 110 EI-EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM-----ANG 183 (513)
Q Consensus 110 ~~-~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g 183 (513)
+. .++|++++.+ |=.+++.|..+|.+.|.|++...++....+...-...... ...+.+.|. .|+
T Consensus 83 ~~~~g~vtal~~S---~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~-------~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 83 DAKQGPVTALKNS---DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSS-------SYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp ---S-SEEEEEE----BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS-----------EEEEEEEEEE-TTSS
T ss_pred eccCCcEeEEecC---CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccc-------cCeeEEEEEEEecCCCc
Confidence 11 3889999984 3348999999999999999887766553333200000000 001112222 122
Q ss_pred CccccccCCCCCCCCcCCCCCCceeceeecc-CCcccccceeeEeeccccCCeEEEE-eccC-C----------------
Q 010287 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVTS-QETNLVAGCRRIYAHAHDYHINSIS-NNSD-G---------------- 244 (513)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~-~---------------- 244 (513)
. ..-..+.+...|.+.++.+.. ............. ..+.+.|..+. ++.+ |
T Consensus 153 y---------SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g 222 (395)
T PF08596_consen 153 Y---------SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT-TNHDSPILSIIPINADTGESALATISAMQGLSKG 222 (395)
T ss_dssp S---------EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE---SS----EEEEEETTT--B-B-BHHHHHGGGGT
T ss_pred c---------cceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc-ccCCCceEEEEEEECCCCCcccCchhHhhccccC
Confidence 1 111225556667887777743 2221111111111 24555555554 3221 1
Q ss_pred ----CEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe-----CCCCeEEEEEeCCCcEEEEEcCCcc
Q 010287 245 ----ETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-----PTHCNMLAYSSSKGSIRLIDMRQSA 315 (513)
Q Consensus 245 ----~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~l~~~~~dg~i~vwd~~~~~ 315 (513)
.+++.+.+..++++..-+.+...+.+ ........+.+- ..+ ..|++-..+|.|++|.+..-+
T Consensus 223 ~~i~g~vVvvSe~~irv~~~~~~k~~~K~~--------~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 223 ISIPGYVVVVSESDIRVFKPPKSKGAHKSF--------DDPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp ----EEEEEE-SSEEEEE-TT---EEEEE---------SS-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEEETTT--
T ss_pred CCcCcEEEEEcccceEEEeCCCCcccceee--------ccccccceEEEEeecccCCc-eEEEEEECCCcEEEEECCCch
Confidence 24555678889999988766554422 111112223332 234 788889999999999998755
Q ss_pred cccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEc
Q 010287 316 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDI 368 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~ 368 (513)
. +..+..+... ....+....++++|..++-.+...+.++.+
T Consensus 294 e----i~~~~l~~~~--------d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv 334 (395)
T PF08596_consen 294 E----IKSVSLPPPL--------DSRRLSSSSISRNGDIFYWTGPSEIQLFSV 334 (395)
T ss_dssp E----EEEEE-SS-----------HHHHTT-EE-TTS-EEEE-SSSEEEEEEE
T ss_pred H----hhcccCCCcc--------ccccccccEECCCCCEEEEeCcccEEEEEE
Confidence 4 2222221100 112344566788999777655444444443
No 340
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.74 E-value=0.02 Score=53.61 Aligned_cols=211 Identities=10% Similarity=0.051 Sum_probs=102.9
Q ss_pred eccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCcc-ccccccCCeEEEEEeC----CCC---eEEE
Q 010287 228 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA-NMEDLTEVITSAEFHP----THC---NMLA 298 (513)
Q Consensus 228 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~----~~~---~~l~ 298 (513)
+....++|++++.+.-| +++.| .+|.+.|.|++.....+. ..+... .-......|+++.|.. ++. -.++
T Consensus 82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 35557899999997544 78888 799999999985554433 111110 0112346788888862 111 3678
Q ss_pred EEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE-Eeec---------------------CCEEE
Q 010287 299 YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK-FARN---------------------GRHIL 356 (513)
Q Consensus 299 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~sp~---------------------~~~l~ 356 (513)
+|...|.+.+|.+.-... ......+.... ..+.++|..|. ++.+ ..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~-g~f~v~~~~~~--------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSN-GRFSVQFAGAT--------TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp EEETTSEEEEEEEEE-GG-G-EEEEEEEEE----------SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred EEeCCCCEEEEEEecCCC-CceEEEEeecc--------ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 889999999998741100 00011111100 11223343333 2111 23666
Q ss_pred EEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEE-----eCCCCEEEEEeCCCcEEEEecCCCCc
Q 010287 357 SRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL-----SGDGGRVATGSYSNLFRVFGCSEGSA 431 (513)
Q Consensus 357 ~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~~~~~dg~i~vwd~~~~~~ 431 (513)
++++..++++...+ .+...... ..... ...+++ ...+..|++-..+|.+++|.+..-+.
T Consensus 231 vvSe~~irv~~~~~-~k~~~K~~-~~~~~--------------~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 231 VVSESDIRVFKPPK-SKGAHKSF-DDPFL--------------CSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp EE-SSEEEEE-TT----EEEEE--SS-EE--------------EEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred EEcccceEEEeCCC-Ccccceee-ccccc--------------cceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 67778899998875 44433332 11110 113344 23556788888999999999987633
Q ss_pred cceeecCC----CCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 432 ESTTLEAS----KNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 432 ~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
+ ..++.. ........++++|..++-.+......+
T Consensus 295 i-~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~ 332 (395)
T PF08596_consen 295 I-KSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSEIQLF 332 (395)
T ss_dssp E-EEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEEEE
T ss_pred h-hcccCCCccccccccccEECCCCCEEEEeCcccEEEE
Confidence 3 333322 223446677888887766655444443
No 341
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.73 E-value=0.067 Score=53.88 Aligned_cols=227 Identities=11% Similarity=0.083 Sum_probs=126.3
Q ss_pred CCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC--------------cEEEE
Q 010287 244 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--------------SIRLI 309 (513)
Q Consensus 244 ~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--------------~i~vw 309 (513)
...++++..+.+.+..++.-+.... +++. -......+++.+.. ..+.+.+... .++++
T Consensus 684 ~d~l~~~~~~~l~i~tid~iqkl~i------rtvp-l~~~prrI~~q~~s-l~~~v~s~r~e~~~~~~~ee~~~s~l~vl 755 (1096)
T KOG1897|consen 684 PDSLASANGGALTIGTIDEIQKLHI------RTVP-LGESPRRICYQESS-LTFGVLSNRIESSAEYYGEEYEVSFLRVL 755 (1096)
T ss_pred CceEEEecCCceEEEEecchhhcce------eeec-CCCChhheEecccc-eEEEEEecccccchhhcCCcceEEEEEEe
Confidence 4467777778888887764332211 1222 23445677777744 4454444322 24455
Q ss_pred EcCCcccccccceeeccccCCCCccccccccccEEEEEEeec-CCEEEEEe----------C-CeEEEEEccCCCCCeee
Q 010287 310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSRD----------Y-MTLKLWDINMDSGPVAT 377 (513)
Q Consensus 310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~l~~~~----------~-~~v~iwd~~~~~~~~~~ 377 (513)
|-.+-+. +..++-.. .+....+.++.|..| +.++++|+ . |.|.+|.+.. ...++.
T Consensus 756 D~nTf~v-------l~~hef~~-----~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~ 822 (1096)
T KOG1897|consen 756 DQNTFEV-------LSSHEFER-----NETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLEL 822 (1096)
T ss_pred cCCceeE-------Eeeccccc-----cceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceee
Confidence 5444222 11111100 111135666778776 67777652 1 6777777764 333333
Q ss_pred eecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceee
Q 010287 378 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 457 (513)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 457 (513)
...+.- ... +.++.. -+|++|| +-+..|++|+..+. +++..-..+..++..+.....+..++.
T Consensus 823 v~e~~v--~Ga-----------v~aL~~-fngkllA--~In~~vrLye~t~~-~eLr~e~~~~~~~~aL~l~v~gdeI~V 885 (1096)
T KOG1897|consen 823 VAETVV--KGA-----------VYALVE-FNGKLLA--GINQSVRLYEWTTE-RELRIECNISNPIIALDLQVKGDEIAV 885 (1096)
T ss_pred eeeeee--ccc-----------eeehhh-hCCeEEE--ecCcEEEEEEcccc-ceehhhhcccCCeEEEEEEecCcEEEE
Confidence 322211 100 112211 1566665 44568999999876 444555678889999999999999999
Q ss_pred ecCCCeEEE--ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEE
Q 010287 458 GSLSGVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYM 510 (513)
Q Consensus 458 ~~~d~~i~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i 510 (513)
|..-+.+.+ ++..+-. ......--+...++++.+-.+..++.+-..+.+++
T Consensus 886 gDlm~Sitll~y~~~eg~--f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~ 938 (1096)
T KOG1897|consen 886 GDLMRSITLLQYKGDEGN--FEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFT 938 (1096)
T ss_pred eeccceEEEEEEeccCCc--eEEeehhhCccceeeEEEecCceEEeecccccEEE
Confidence 999999888 2222211 01111111456788888888888777666666654
No 342
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00024 Score=67.64 Aligned_cols=109 Identities=13% Similarity=0.136 Sum_probs=82.4
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccc---cCC
Q 010287 403 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALD---ANG 479 (513)
Q Consensus 403 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~---~~~ 479 (513)
-+++..+++++.|+.-|.+++|+...+........+....+..+.++++..++|.|+..|.|.+.+.......+ ...
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence 46677889999999999999999887755556666666677788899999999999999999982222111111 111
Q ss_pred ccccccCCeeEEEEeCCCCEEEEEcCCcEEEE
Q 010287 480 NAFDFSMKLLHLAWHPSENSIACAASNSLYMY 511 (513)
Q Consensus 480 ~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~ 511 (513)
.-..|...|++++|++++..+.+|.+.|.+++
T Consensus 119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVL 150 (726)
T ss_pred ccccCCceEEEEEecccccEEeecCCCceEEE
Confidence 22237889999999999999999997777654
No 343
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.71 E-value=0.042 Score=51.25 Aligned_cols=278 Identities=13% Similarity=0.120 Sum_probs=122.3
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcc-----cCcccccCceeccCCCccc
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF-----GSHVSAIPKSYMANGGCGE 187 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~ 187 (513)
..+....|+| +|+.++-. .++.|.+++..++...++..-. ...+..|... ........+.|||||+.+.
T Consensus 43 ~~~~~~~~sP--~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg---~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la 116 (353)
T PF00930_consen 43 PKLQDAKWSP--DGKYIAFV-RDNNLYLRDLATGQETQLTTDG---EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLA 116 (353)
T ss_dssp TTBSEEEE-S--SSTEEEEE-ETTEEEEESSTTSEEEESES-----TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEE
T ss_pred cccccceeec--CCCeeEEE-ecCceEEEECCCCCeEEecccc---ceeEEcCccceeccccccccccceEECCCCCEEE
Confidence 5688899976 66676665 4678999998877554443322 1111111110 0012234778899988752
Q ss_pred cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeecccc--CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcc
Q 010287 188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHD--YHINSISNNSDGETFISADDLRINLWNLEISNQ 265 (513)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~ 265 (513)
.... .+..++.+.+.. +...+. -.+..+.+-.-|... ..-.+.++|+.+++.
T Consensus 117 ~~~~-----------d~~~v~~~~~~~------------~~~~~~~yp~~~~~~YPk~G~~n---p~v~l~v~~~~~~~~ 170 (353)
T PF00930_consen 117 FLRF-----------DEREVPEYPLPD------------YSPPDSQYPEVESIRYPKAGDPN---PRVSLFVVDLASGKT 170 (353)
T ss_dssp EEEE-----------E-TTS-EEEEEE------------ESSSTESS-EEEEEE--BTTS------EEEEEEEESSSTCC
T ss_pred EEEE-----------CCcCCceEEeec------------cCCccccCCcccccccCCCCCcC---CceEEEEEECCCCcE
Confidence 2110 111111111100 000000 012222221111111 122466678875553
Q ss_pred eeeecccCccccccccCCeEEEEEeCCCCeEEEEE--eCCC---cEEEEEcCCcccccccceeeccccCCCCcccccccc
Q 010287 266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS--SSKG---SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 340 (513)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (513)
. .+ +. +..+..-...+..+.|.+++ ..|+.. ..+. .+.++|..++.... ....... +-.
T Consensus 171 ~-~~-~~-~~~~~~~~~yl~~v~W~~d~-~~l~~~~~nR~q~~~~l~~~d~~tg~~~~----~~~e~~~--------~Wv 234 (353)
T PF00930_consen 171 T-EL-DP-PNSLNPQDYYLTRVGWSPDG-KRLWVQWLNRDQNRLDLVLCDASTGETRV----VLEETSD--------GWV 234 (353)
T ss_dssp C-EE-----HHHHTSSEEEEEEEEEETT-EEEEEEEEETTSTEEEEEEEEECTTTCEE----EEEEESS--------SSS
T ss_pred E-Ee-ee-ccccCCCccCcccceecCCC-cEEEEEEcccCCCEEEEEEEECCCCceeE----EEEecCC--------cce
Confidence 2 11 00 00112335668899999998 533333 2222 45566776654311 1111110 000
Q ss_pred ccEEEEEEe-ecCCEEE-EEe-C--CeEEEEEccCCCCCeeeeecccccccccccccccCCcccee-eEEEeCCCCEEE-
Q 010287 341 ASISDIKFA-RNGRHIL-SRD-Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF-ECCLSGDGGRVA- 413 (513)
Q Consensus 341 ~~v~~i~~s-p~~~~l~-~~~-~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~- 413 (513)
..-....+. +++..++ ... + ..|.+++.. +.....+...... |. -+.++++++.|+
T Consensus 235 ~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~--~~~~~~lT~G~~~---------------V~~i~~~d~~~~~iyf 297 (353)
T PF00930_consen 235 DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD--GGKPRQLTSGDWE---------------VTSILGWDEDNNRIYF 297 (353)
T ss_dssp SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT--SSEEEESS-SSS----------------EEEEEEEECTSSEEEE
T ss_pred eeecccccccCCCCEEEEEEEcCCCcEEEEEccc--ccceeccccCcee---------------ecccceEcCCCCEEEE
Confidence 112344444 6555444 333 2 455555554 4434444322222 22 367888887665
Q ss_pred EEeCC--C--cEEEEecC-CCCccceeecCCCCceeEEEEcCCCCceee
Q 010287 414 TGSYS--N--LFRVFGCS-EGSAESTTLEASKNPMRRQVQTPSRPSRPL 457 (513)
Q Consensus 414 ~~~~d--g--~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 457 (513)
++..+ + .|+.-++. .+ ....+.........+.++|++++++.
T Consensus 298 ~a~~~~p~~r~lY~v~~~~~~--~~~~LT~~~~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 298 TANGDNPGERHLYRVSLDSGG--EPKCLTCEDGDHYSASFSPDGKYYVD 344 (353)
T ss_dssp EESSGGTTSBEEEEEETTETT--EEEESSTTSSTTEEEEE-TTSSEEEE
T ss_pred EecCCCCCceEEEEEEeCCCC--CeEeccCCCCCceEEEECCCCCEEEE
Confidence 45442 2 44444555 33 22334333333368999999998764
No 344
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.65 E-value=0.054 Score=50.60 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=38.0
Q ss_pred cccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccc
Q 010287 336 FTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL 384 (513)
Q Consensus 336 ~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~ 384 (513)
+......+.+++.+|++++.++.+. |.|.++|+.. +..++.+++....
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdA 351 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDA 351 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccc
Confidence 3445567889999999998888766 9999999996 7777777776543
No 345
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.62 E-value=0.0043 Score=62.21 Aligned_cols=102 Identities=21% Similarity=0.213 Sum_probs=70.8
Q ss_pred EEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeec
Q 010287 247 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 325 (513)
Q Consensus 247 l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 325 (513)
.+.| +++.++.||.+.....+ +... ...........|++-..+| .||.|+.+|.||+|| +.+..
T Consensus 545 tflGls~n~lfriDpR~~~~k~--v~~~-~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd-~~g~~--------- 609 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKL--VDSQ-SKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYD-RLGKR--------- 609 (794)
T ss_pred eEEEECCCceEEeccCCCCCce--eecc-ccccccCCCceEEEecCCc--eEEEEeCCCcEEeec-ccchh---------
Confidence 3445 89999999998654211 1000 0111234567888888887 899999999999999 33321
Q ss_pred cccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEcc
Q 010287 326 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 369 (513)
Q Consensus 326 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~ 369 (513)
.+..+.+...+|..|..+.||++|++.++..|-+++..
T Consensus 610 ------AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 610 ------AKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred ------hhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 11224455579999999999999999888788888864
No 346
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0019 Score=57.38 Aligned_cols=88 Identities=17% Similarity=0.280 Sum_probs=66.8
Q ss_pred ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCE-
Q 010287 276 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH- 354 (513)
Q Consensus 276 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~- 354 (513)
-+..+...|.+++|+|....++..++.+..|+|.|+++..... .+..+ ..+++++|.-|...
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs----sy~a~-------------~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS----SYIAY-------------NQIWSCCWDLDERHV 250 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee----heecc-------------CCceeeeeccCCcce
Confidence 3466788899999999984489999999999999999876532 22222 47999999987654
Q ss_pred EEEEeC-CeEEEEEccCCCCCeeeeec
Q 010287 355 ILSRDY-MTLKLWDINMDSGPVATFQV 380 (513)
Q Consensus 355 l~~~~~-~~v~iwd~~~~~~~~~~~~~ 380 (513)
|.+|.. |.|.|||++.+..++..+.+
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~a 277 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELVA 277 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhhh
Confidence 455555 99999999986666655544
No 347
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.45 E-value=0.014 Score=42.59 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=40.2
Q ss_pred CCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe---CCCCeEEEEEeCCCcEEE
Q 010287 233 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH---PTHCNMLAYSSSKGSIRL 308 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~l~~~~~dg~i~v 308 (513)
..|.+++-... ..|+.+ .+|+|-+|+-. .+.+++ + ....+.++.+. .+|...|++|-.+|.|-+
T Consensus 43 ~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRi--------K-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 43 DKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRI--------K-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeee--------c-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 34666766655 557777 89999999764 334332 1 12335666553 455457889988888753
No 348
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.45 E-value=0.042 Score=46.34 Aligned_cols=126 Identities=14% Similarity=0.115 Sum_probs=82.8
Q ss_pred eCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEc
Q 010287 290 HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDI 368 (513)
Q Consensus 290 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~ 368 (513)
-++...+++.|+..+.+.--|..+|.+.++.+.- ..+.+-+.- -|.+++.|.. |.+++.+.
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg-----------------~RiE~sa~v-vgdfVV~GCy~g~lYfl~~ 80 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILG-----------------VRIECSAIV-VGDFVVLGCYSGGLYFLCV 80 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCcEEeehhhC-----------------ceeeeeeEE-ECCEEEEEEccCcEEEEEe
Confidence 3444478889999999999999998875432111 122222222 4667888876 99999999
Q ss_pred cCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEE
Q 010287 369 NMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ 448 (513)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~ 448 (513)
++ +.....+..-+.... .....+++..+..|+.|++++..|.++.... ...+-......+-+.
T Consensus 81 ~t-Gs~~w~f~~~~~vk~---------------~a~~d~~~glIycgshd~~~yalD~~~~~cV-ykskcgG~~f~sP~i 143 (354)
T KOG4649|consen 81 KT-GSQIWNFVILETVKV---------------RAQCDFDGGLIYCGSHDGNFYALDPKTYGCV-YKSKCGGGTFVSPVI 143 (354)
T ss_pred cc-hhheeeeeehhhhcc---------------ceEEcCCCceEEEecCCCcEEEecccccceE-EecccCCceecccee
Confidence 97 766665554443211 4566789999999999999999999877444 333333333333444
Q ss_pred cC
Q 010287 449 TP 450 (513)
Q Consensus 449 ~~ 450 (513)
.|
T Consensus 144 ~~ 145 (354)
T KOG4649|consen 144 AP 145 (354)
T ss_pred cC
Confidence 44
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.43 E-value=0.0094 Score=56.51 Aligned_cols=180 Identities=10% Similarity=0.123 Sum_probs=89.1
Q ss_pred ccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe
Q 010287 280 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 359 (513)
Q Consensus 280 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~ 359 (513)
....+..+.++|++ +.++. +.||.-.++.....+. + ..+.-....|.+++++.+.-.
T Consensus 31 ~~~~p~~ls~npng-r~v~V-~g~geY~iyt~~~~r~-----k----------------~~G~g~~~vw~~~n~yAv~~~ 87 (443)
T PF04053_consen 31 CEIYPQSLSHNPNG-RFVLV-CGDGEYEIYTALAWRN-----K----------------AFGSGLSFVWSSRNRYAVLES 87 (443)
T ss_dssp -SS--SEEEE-TTS-SEEEE-EETTEEEEEETTTTEE-----E----------------EEEE-SEEEE-TSSEEEEE-T
T ss_pred CCcCCeeEEECCCC-CEEEE-EcCCEEEEEEccCCcc-----c----------------ccCceeEEEEecCccEEEEEC
Confidence 34557899999998 76666 6677777777322111 0 113456788998666544444
Q ss_pred CCeEEEE-EccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecC
Q 010287 360 YMTLKLW-DINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 438 (513)
Q Consensus 360 ~~~v~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 438 (513)
...|.|+ ++. ......+...... ..+ |. |..|...+.+ .|.+||..++ ..+..+..
T Consensus 88 ~~~I~I~kn~~--~~~~k~i~~~~~~----------------~~I-f~--G~LL~~~~~~-~i~~yDw~~~-~~i~~i~v 144 (443)
T PF04053_consen 88 SSTIKIYKNFK--NEVVKSIKLPFSV----------------EKI-FG--GNLLGVKSSD-FICFYDWETG-KLIRRIDV 144 (443)
T ss_dssp TS-EEEEETTE--E-TT-----SS-E----------------EEE-E---SSSEEEEETT-EEEEE-TTT---EEEEESS
T ss_pred CCeEEEEEcCc--cccceEEcCCccc----------------ceE-Ec--CcEEEEECCC-CEEEEEhhHc-ceeeEEec
Confidence 5889996 333 2222233222111 011 22 7777777654 8999999987 44344443
Q ss_pred CCCceeEEEEcCCCCceeeecCCCeEEEecCCC------CCccccCCc-cccccCCeeEEEEeCCCCEEEEEcCCcEE
Q 010287 439 SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD------NSALDANGN-AFDFSMKLLHLAWHPSENSIACAASNSLY 509 (513)
Q Consensus 439 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~------~~~~~~~~~-~~~~~~~i~~~~~sp~~~~la~~~~~~~~ 509 (513)
.+|..+.|++++.++|..+.+....+....+ ..+.+.... ..+...+|.+..|..| .++-.+.+.+.
T Consensus 145 --~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~~lk 218 (443)
T PF04053_consen 145 --SAVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSNHLK 218 (443)
T ss_dssp ---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TTEEE
T ss_pred --CCCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCCeEE
Confidence 3488999999999999998776666511111 000010111 1123678999999987 54444433443
No 350
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.33 E-value=0.04 Score=49.25 Aligned_cols=212 Identities=11% Similarity=0.103 Sum_probs=104.6
Q ss_pred eEEEeecCCCceEEEe--ecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCC
Q 010287 117 KIRWCQSANSALYLLS--TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (513)
Q Consensus 117 ~i~~~~~~~~~~l~s~--s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (513)
.+++ +.++++++.. +---+|.|-|+..++......... +...-|.+..
T Consensus 99 ~~~l--s~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-------------------C~~iyP~~~~--------- 148 (342)
T PF06433_consen 99 MFAL--SADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-------------------CWLIYPSGNR--------- 148 (342)
T ss_dssp GEEE---TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-------------------EEEEEEEETT---------
T ss_pred ceEE--ccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-------------------EEEEEecCCC---------
Confidence 3445 4466666664 445667888888877665444332 1111122210
Q ss_pred CCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCe-EEEEeccC-CCEEEEEcCCeEEEEEcCCCcceee-ecc
Q 010287 195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHI-NSISNNSD-GETFISADDLRINLWNLEISNQSFN-IVD 271 (513)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~-~~~l~s~~d~~i~vwd~~~~~~~~~-~~~ 271 (513)
-..+-+.+|++.-..+....... .+....| ....+++ ..-++... +.++..+.+|.|+--|+........ .+.
T Consensus 149 --~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F-~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~ 224 (342)
T PF06433_consen 149 --GFSMLCGDGSLLTVTLDADGKEA-QKSTKVF-DPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWS 224 (342)
T ss_dssp --EEEEEETTSCEEEEEETSTSSEE-EEEEEES-STTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEE
T ss_pred --ceEEEecCCceEEEEECCCCCEe-Eeecccc-CCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccc
Confidence 00344677777777665333222 1112222 2222322 23344443 4455566788888888875432211 110
Q ss_pred cCc---cccccccCCeEEEEEeCCCCeEEEEEeC--C-------CcEEEEEcCCcccccccceeeccccCCCCccccccc
Q 010287 272 VKP---ANMEDLTEVITSAEFHPTHCNMLAYSSS--K-------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 339 (513)
Q Consensus 272 ~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~--d-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (513)
+-. ..-....+.-.-+++++....+++.--. + ..|-++|+.+++. +..++..
T Consensus 225 ~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr----v~Ri~l~------------ 288 (342)
T PF06433_consen 225 LLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR----VARIPLE------------ 288 (342)
T ss_dssp SS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE----EEEEEEE------------
T ss_pred ccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeE----EEEEeCC------------
Confidence 000 0001112223456777655243332211 1 1577888888776 3444432
Q ss_pred cccEEEEEEeecCC-EEEEEe--CCeEEEEEccCCCCCeeeeec
Q 010287 340 IASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATFQV 380 (513)
Q Consensus 340 ~~~v~~i~~sp~~~-~l~~~~--~~~v~iwd~~~~~~~~~~~~~ 380 (513)
.++.+|..+.+.+ +|++.+ ++.+.+||..+ ++.+.++..
T Consensus 289 -~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t-Gk~~~~~~~ 330 (342)
T PF06433_consen 289 -HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT-GKLVRSIEQ 330 (342)
T ss_dssp -EEESEEEEESSSS-EEEEEETTTTEEEEEETTT---EEEEE--
T ss_pred -CccceEEEccCCCcEEEEEcCCCCeEEEEeCcC-CcEEeehhc
Confidence 3577999998765 555543 38999999997 888877753
No 351
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.32 E-value=0.13 Score=47.13 Aligned_cols=175 Identities=13% Similarity=0.109 Sum_probs=78.3
Q ss_pred CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC---C-cEEEEEcCCcccccccceeeccc
Q 010287 252 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---G-SIRLIDMRQSALCDTHSKLFEEQ 327 (513)
Q Consensus 252 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g-~i~vwd~~~~~~~~~~~~~~~~~ 327 (513)
...|.-.|+.+++.. .+-.-...+..+.|+|..+.+|+.|-+. . .-|+|-+++-... .+.+..+
T Consensus 167 ~~~i~~idl~tG~~~---------~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~---~~~v~~~ 234 (386)
T PF14583_consen 167 HCRIFTIDLKTGERK---------VVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN---VKKVHRR 234 (386)
T ss_dssp -EEEEEEETTT--EE---------EEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------EESS--
T ss_pred CceEEEEECCCCcee---------EEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc---ceeeecC
Confidence 344556667655432 1222456788999999998888887652 2 1255655432211 1111111
Q ss_pred cCCCCccccccccccEEEEEEeecCCEEEE-Ee-----CCeEEEEEccCCCCCeeeeecccccccccccccccCCcccee
Q 010287 328 EAPGTRSFFTEIIASISDIKFARNGRHILS-RD-----YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 401 (513)
Q Consensus 328 ~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~-----~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (513)
.. ...+..=-|.|||..|.- +. +..|.-+|+.+ ++......... ..
T Consensus 235 ~~----------~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t-~~~~~~~~~p~-----------------~~ 286 (386)
T PF14583_consen 235 ME----------GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT-GERRRLMEMPW-----------------CS 286 (386)
T ss_dssp -T----------TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT---EEEEEEE-S-----------------EE
T ss_pred CC----------CcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC-CCceEEEeCCc-----------------ee
Confidence 10 124555568889887764 21 13455566664 32222111111 01
Q ss_pred eEEEeCCCCEEEEEeCCC----------------cEEEEecCCCCccc--------eeecCCCC-ceeEEEEcCCCCcee
Q 010287 402 ECCLSGDGGRVATGSYSN----------------LFRVFGCSEGSAES--------TTLEASKN-PMRRQVQTPSRPSRP 456 (513)
Q Consensus 402 ~~~~s~~~~~l~~~~~dg----------------~i~vwd~~~~~~~~--------~~~~~~~~-~v~~~~~~~~~~~l~ 456 (513)
-...++||++++-=+.|. -|++++++.+.... ..+.++.. .=....|+||+++++
T Consensus 287 H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~Vl 366 (386)
T PF14583_consen 287 HFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVL 366 (386)
T ss_dssp EEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEE
T ss_pred eeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEE
Confidence 455678888876433332 46677877553211 01122221 124678999999987
Q ss_pred eec-CCCeEEE
Q 010287 457 LGS-LSGVVRR 466 (513)
Q Consensus 457 ~~~-~d~~i~~ 466 (513)
..| ..|...|
T Consensus 367 F~Sd~~G~~~v 377 (386)
T PF14583_consen 367 FRSDMEGPPAV 377 (386)
T ss_dssp EEE-TTSS-EE
T ss_pred EECCCCCCccE
Confidence 654 4454444
No 352
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.32 E-value=0.00037 Score=40.26 Aligned_cols=32 Identities=19% Similarity=0.450 Sum_probs=29.3
Q ss_pred ccccccEEEEEEcCCCCEEEeecCCCcEEEEE
Q 010287 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63 (513)
Q Consensus 32 ~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~ 63 (513)
..|...|++++|++++.++++++.|+.+++|+
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 35788999999999999999999999999996
No 353
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.30 E-value=0.17 Score=48.13 Aligned_cols=193 Identities=12% Similarity=0.053 Sum_probs=91.8
Q ss_pred CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287 233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 312 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 312 (513)
+.+.++.|+.+.++++...||.++++|+. ++..+.+- .......-....+....+..+| ++.-..++.+.+..--
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~-~~i~~~~v~e~~i~~~~~~~~G---ivvLt~~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLG-EEIEEEKVLECRIFAIWFYKNG---IVVLTGNNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCC-Cceeechh-hhccccCcccccccccccCCCC---EEEECCCCeEEEEeCc
Confidence 67999999998888877799999999987 33211110 0000011112223333444455 3333345554443221
Q ss_pred CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccc
Q 010287 313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 391 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
..... .+.+. +.+........+.....-..++.+....+... ++.+.+.+-.. .+. +....
T Consensus 156 ~~~~~---~~~~~--~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~-~~~---i~~~~--------- 217 (410)
T PF04841_consen 156 DEPVK---LRRLP--EIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS-FKQ---IDSDG--------- 217 (410)
T ss_pred cccch---hhccc--cCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc-ccc---ccCCC---------
Confidence 11100 01110 00000000000001000123444444444433 35555444321 111 11111
Q ss_pred cccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCC-CCceeEEEEcCCCCcee
Q 010287 392 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSRP 456 (513)
Q Consensus 392 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~ 456 (513)
++..+++||++++||.-..+|.+.+....-.+ ....+... ..+...+.|.-+...++
T Consensus 218 -------~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~-~~~e~~~~~~~~p~~~~WCG~dav~l 275 (410)
T PF04841_consen 218 -------PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE-KLCEFDTDSKSPPKQMAWCGNDAVVL 275 (410)
T ss_pred -------CeEEEEECCCCCEEEEEECCCCEEEEECcccc-eeEEeecCcCCCCcEEEEECCCcEEE
Confidence 14589999999999999999999988755432 22333322 34556788876644333
No 354
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.28 E-value=0.061 Score=46.12 Aligned_cols=201 Identities=17% Similarity=0.154 Sum_probs=111.0
Q ss_pred eEEEEEeCCCCeEEEEEeCCCc-EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe---
Q 010287 284 ITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--- 359 (513)
Q Consensus 284 i~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--- 359 (513)
-..++++|..+.-++.+-.-|+ ..++|....+... ++...+. ..+.+| =.|||||++|.+..
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv----~~~s~~~----RHfyGH------Gvfs~dG~~LYATEndf 135 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPV----TLVSQEG----RHFYGH------GVFSPDGRLLYATENDF 135 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcE----EEecccC----ceeecc------cccCCCCcEEEeecCCC
Confidence 3457777776666666666664 4578887765422 2211110 012233 35899999999731
Q ss_pred C---CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC------------------
Q 010287 360 Y---MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS------------------ 418 (513)
Q Consensus 360 ~---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------------------ 418 (513)
+ |.|-|||.+..-..+-++..|.-.. ..+.|.+||+.|+.+...
T Consensus 136 d~~rGViGvYd~r~~fqrvgE~~t~GiGp---------------Hev~lm~DGrtlvvanGGIethpdfgR~~lNldsMe 200 (366)
T COG3490 136 DPNRGVIGVYDAREGFQRVGEFSTHGIGP---------------HEVTLMADGRTLVVANGGIETHPDFGRTELNLDSME 200 (366)
T ss_pred CCCCceEEEEecccccceecccccCCcCc---------------ceeEEecCCcEEEEeCCceecccccCccccchhhcC
Confidence 2 8999999985445555565554321 268899999998866431
Q ss_pred CcEEEEecCCCCccc-eeec--CCCCceeEEEEcCCCCceeeecCCCeE-----EE---ecCCCCCccccCCc-cccccC
Q 010287 419 NLFRVFGCSEGSAES-TTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVV-----RR---VKGADNSALDANGN-AFDFSM 486 (513)
Q Consensus 419 g~i~vwd~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i-----~~---~~~~~~~~~~~~~~-~~~~~~ 486 (513)
-++.+.|..++..+. .++. .+...++.+...+++..+.-+-..|.- -+ .++..+........ ...+..
T Consensus 201 PSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~an 280 (366)
T COG3490 201 PSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFAN 280 (366)
T ss_pred ccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHh
Confidence 122333433442221 2333 345567778888777766554332221 01 22222221111111 112445
Q ss_pred CeeEEEEeCCCCEEEEEc--CCcEEEEeC
Q 010287 487 KLLHLAWHPSENSIACAA--SNSLYMYYA 513 (513)
Q Consensus 487 ~i~~~~~sp~~~~la~~~--~~~~~i~~~ 513 (513)
-|-+++-+-+..+++..+ .|..++|.+
T Consensus 281 YigsiA~n~~~glV~lTSP~GN~~vi~da 309 (366)
T COG3490 281 YIGSIAANRRDGLVALTSPRGNRAVIWDA 309 (366)
T ss_pred hhhheeecccCCeEEEecCCCCeEEEEEc
Confidence 677888887777777555 667777764
No 355
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.13 Score=48.49 Aligned_cols=189 Identities=13% Similarity=0.144 Sum_probs=118.2
Q ss_pred eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe--CCCcEEEEE
Q 010287 235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLID 310 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~vwd 310 (513)
...+++++.+..+... +++.|.+.|..+....... .-......++++|++..+.++-. .++.+.+.|
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~---------~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid 146 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI---------PVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVID 146 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe---------eeccCCceEEECCCCCEEEEEecccCCceEEEEe
Confidence 4567888888865554 5899999997655433221 11225678999999845555544 368899999
Q ss_pred cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--CCeEEEEEccCCCCCee-----eeecccc
Q 010287 311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVA-----TFQVHEH 383 (513)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~~~v~iwd~~~~~~~~~-----~~~~~~~ 383 (513)
..++.... ...... .+ ..++++|+|..++... ++.|.+.|... ....+ .......
T Consensus 147 ~~t~~~~~----~~~vG~------------~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~~~~~~ 208 (381)
T COG3391 147 AATNKVTA----TIPVGN------------TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG-NSVVRGSVGSLVGVGTG 208 (381)
T ss_pred CCCCeEEE----EEecCC------------Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCC-cceeccccccccccCCC
Confidence 88776532 111110 23 7799999999888765 49999999764 32222 0111111
Q ss_pred cccccccccccCCccceeeEEEeCCCCEEEEEeCC---CcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeec-
Q 010287 384 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS- 459 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 459 (513)
+ ..+.++|+|.++...... +.+...|..++................+...|+++.+.+..
T Consensus 209 P----------------~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~ 272 (381)
T COG3391 209 P----------------AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS 272 (381)
T ss_pred C----------------ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec
Confidence 1 268999999976655433 58888888876332221222111345688999999887763
Q ss_pred CCCeEEE
Q 010287 460 LSGVVRR 466 (513)
Q Consensus 460 ~d~~i~~ 466 (513)
..+.+.+
T Consensus 273 ~~~~V~v 279 (381)
T COG3391 273 QGGTVSV 279 (381)
T ss_pred CCCeEEE
Confidence 3466666
No 356
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.26 E-value=0.15 Score=46.94 Aligned_cols=175 Identities=10% Similarity=0.107 Sum_probs=95.8
Q ss_pred CeEEEEEcCCC-c--ceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcc-cccccceeecccc
Q 010287 253 LRINLWNLEIS-N--QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA-LCDTHSKLFEEQE 328 (513)
Q Consensus 253 ~~i~vwd~~~~-~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~ 328 (513)
|.|.++++... . ..++++ .-....++|++++-- .+ .+++ +..+.|.+|++...+ ... ...++.+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i-----~~~~~~g~V~ai~~~-~~-~lv~--~~g~~l~v~~l~~~~~l~~--~~~~~~~- 129 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLI-----HSTEVKGPVTAICSF-NG-RLVV--AVGNKLYVYDLDNSKTLLK--KAFYDSP- 129 (321)
T ss_dssp EEEEEEEECSS-----EEEEE-----EEEEESS-EEEEEEE-TT-EEEE--EETTEEEEEEEETTSSEEE--EEEE-BS-
T ss_pred cEEEEEEEEcccccceEEEEE-----EEEeecCcceEhhhh-CC-EEEE--eecCEEEEEEccCcccchh--hheecce-
Confidence 88999999863 1 122221 123347889998877 33 4333 345899999998766 211 1111111
Q ss_pred CCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC
Q 010287 329 APGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 407 (513)
Q Consensus 329 ~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 407 (513)
..+.++.. .+.+++.|+- ..+.++..+.....+..+...... ..++++.|-+
T Consensus 130 ------------~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~-------------~~v~~~~~l~ 182 (321)
T PF03178_consen 130 ------------FYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQP-------------RWVTAAEFLV 182 (321)
T ss_dssp ------------SSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS--------------BEEEEEEEE-
T ss_pred ------------EEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCC-------------ccEEEEEEec
Confidence 23555544 4669999886 888888666423333333322211 1256888886
Q ss_pred CCCEEEEEeCCCcEEEEecCCC------C--ccceeecCC-CCceeEE---EEcCC--CC------ceeeecCCCeEEE
Q 010287 408 DGGRVATGSYSNLFRVFGCSEG------S--AESTTLEAS-KNPMRRQ---VQTPS--RP------SRPLGSLSGVVRR 466 (513)
Q Consensus 408 ~~~~l~~~~~dg~i~vwd~~~~------~--~~~~~~~~~-~~~v~~~---~~~~~--~~------~l~~~~~d~~i~~ 466 (513)
+++.++.+..+|.+.++..... . .+......| ...+.++ .+.|. +. .++.++.+|.|-.
T Consensus 183 d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 183 DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 7678999999999999987631 1 111122222 3456666 43441 21 3777788888874
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.24 E-value=0.16 Score=46.70 Aligned_cols=188 Identities=11% Similarity=0.084 Sum_probs=99.0
Q ss_pred eEEEEEeC----------CCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEE
Q 010287 295 NMLAYSSS----------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLK 364 (513)
Q Consensus 295 ~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~ 364 (513)
.+|+.|+. .|.|.++++.........++.... ....++|++++-- +..|+++..+.|.
T Consensus 43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~----------~~~~g~V~ai~~~--~~~lv~~~g~~l~ 110 (321)
T PF03178_consen 43 EYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS----------TEVKGPVTAICSF--NGRLVVAVGNKLY 110 (321)
T ss_dssp EEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE----------EEESS-EEEEEEE--TTEEEEEETTEEE
T ss_pred CEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE----------EeecCcceEhhhh--CCEEEEeecCEEE
Confidence 67776654 288999999874100001111111 1223678888765 4447777778999
Q ss_pred EEEccCCCC-CeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeec--CCCC
Q 010287 365 LWDINMDSG-PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE--ASKN 441 (513)
Q Consensus 365 iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~ 441 (513)
+|++.. .+ ....-..+... ...+....+++++.|..-..+.++...........+. ....
T Consensus 111 v~~l~~-~~~l~~~~~~~~~~----------------~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~ 173 (321)
T PF03178_consen 111 VYDLDN-SKTLLKKAFYDSPF----------------YITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR 173 (321)
T ss_dssp EEEEET-TSSEEEEEEE-BSS----------------SEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B
T ss_pred EEEccC-cccchhhheecceE----------------EEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc
Confidence 999996 44 22222221211 1334444466999999888888886654323222332 2344
Q ss_pred ceeEEEEcCCCCceeeecCCCeEEEecCCC--CC---cc-cc-CCccccccCCeeEE---EEeCC--CC-------EEEE
Q 010287 442 PMRRQVQTPSRPSRPLGSLSGVVRRVKGAD--NS---AL-DA-NGNAFDFSMKLLHL---AWHPS--EN-------SIAC 502 (513)
Q Consensus 442 ~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~--~~---~~-~~-~~~~~~~~~~i~~~---~~sp~--~~-------~la~ 502 (513)
.+.++.+-+++..++.+..+|.+.+.+-.. .. +. .+ ....+.....|+++ +..|. +. .+..
T Consensus 174 ~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~ 253 (321)
T PF03178_consen 174 WVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYG 253 (321)
T ss_dssp EEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEE
T ss_pred cEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEE
Confidence 577777776667899999999998821111 11 00 01 11222346778888 66662 22 4445
Q ss_pred EcCCcEEEE
Q 010287 503 AASNSLYMY 511 (513)
Q Consensus 503 ~~~~~~~i~ 511 (513)
+.++++...
T Consensus 254 T~~G~Ig~l 262 (321)
T PF03178_consen 254 TVDGSIGVL 262 (321)
T ss_dssp ETTS-EEEE
T ss_pred ecCCEEEEE
Confidence 557777643
No 358
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.002 Score=60.87 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=62.0
Q ss_pred CCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeE-EEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287 233 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSIRLID 310 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~dg~i~vwd 310 (513)
..+.-+.|+|.-..||.+ .+|.|.+..++ .++.+ .+.-+...++ +++|.||| ++++.|-.||+|++.|
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlw--------tip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLW--------TIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHD 90 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeE--------eccCCCCccceeeeecCCC-CEEEEEecCCeEEEEE
Confidence 347778999999999999 79999999988 44444 3343555566 99999998 9999999999999999
Q ss_pred cCCccccc
Q 010287 311 MRQSALCD 318 (513)
Q Consensus 311 ~~~~~~~~ 318 (513)
+.++....
T Consensus 91 ve~~~~l~ 98 (665)
T KOG4640|consen 91 VEKGGRLV 98 (665)
T ss_pred ccCCCcee
Confidence 99887643
No 359
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.18 E-value=0.27 Score=48.16 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=20.8
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCcc
Q 010287 408 DGGRVATGSYSNLFRVFGCSEGSAE 432 (513)
Q Consensus 408 ~~~~l~~~~~dg~i~vwd~~~~~~~ 432 (513)
.+..|+.++.||.|+.+|.++++.+
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCcee
Confidence 5568888899999999999998433
No 360
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.15 E-value=0.0016 Score=39.37 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=28.8
Q ss_pred ccccEEEEEEcCCCCEEEeecCCCcEEEEEe
Q 010287 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFER 64 (513)
Q Consensus 34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~ 64 (513)
-...|++++|+|..++||.|+.+|.|.|+.+
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 3567999999999999999999999999998
No 361
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.03 E-value=0.059 Score=52.43 Aligned_cols=64 Identities=13% Similarity=0.009 Sum_probs=44.3
Q ss_pred eEEEeCCCCEEEEEe-CCCcEEEEecCCCCc-----------cceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 402 ECCLSGDGGRVATGS-YSNLFRVFGCSEGSA-----------ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 402 ~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.+.++|||+++++++ .++.+.|.|+.+.+. +....+.-..| ...+|.++|....+-..|..|-.
T Consensus 325 GV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~k 400 (635)
T PRK02888 325 GVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVK 400 (635)
T ss_pred ceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEE
Confidence 789999999988655 689999999987532 11222222233 36678888887777777766655
No 362
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.01 E-value=0.23 Score=44.47 Aligned_cols=230 Identities=13% Similarity=0.105 Sum_probs=120.6
Q ss_pred cCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccc
Q 010287 242 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 320 (513)
Q Consensus 242 ~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 320 (513)
..++.|+.| ++| +.+++........++ .+...|..+...|+- +.+++- .|+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i---------~~~~~I~ql~vl~~~-~~llvL-sd~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI---------LKLSSITQLSVLPEL-NLLLVL-SDGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE---------eecceEEEEEEeccc-CEEEEE-cCCccEEEEchhhcccccc
Confidence 356778888 677 999998333333222 123349999999986 555444 3599999998775432210
Q ss_pred ceeeccccCCCCccccccccccEEEEE---EeecCCEEEEEeCCeEEEEEccCC---C-CCeeeeecccccccccccccc
Q 010287 321 SKLFEEQEAPGTRSFFTEIIASISDIK---FARNGRHILSRDYMTLKLWDINMD---S-GPVATFQVHEHLRPKLCDLYE 393 (513)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~v~~i~---~sp~~~~l~~~~~~~v~iwd~~~~---~-~~~~~~~~~~~~~~~~~~~~~ 393 (513)
. ......... ..........+..++ -......|+.+....|.+|..... . +..+.+.....
T Consensus 73 ~-~~~~~~~~~-~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~---------- 140 (275)
T PF00780_consen 73 A-PLAFPKSRS-LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDP---------- 140 (275)
T ss_pred c-ccccccccc-ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCC----------
Confidence 0 000000000 000000112344444 122445666676789999988742 1 34444444433
Q ss_pred cCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccc-eeecC----------CCCceeEEEEcCCCCceeeecCCC
Q 010287 394 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES-TTLEA----------SKNPMRRQVQTPSRPSRPLGSLSG 462 (513)
Q Consensus 394 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~----------~~~~v~~~~~~~~~~~l~~~~~d~ 462 (513)
+..++|. ++.++.|..++ ..+.|+.++.... ..... ...++..+. -+++.+|++- .+-
T Consensus 141 ------~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~-~~~ 209 (275)
T PF00780_consen 141 ------PSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY-DNI 209 (275)
T ss_pred ------cEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe-cce
Confidence 2378888 55777777554 7888998663321 11111 112332223 3345566543 344
Q ss_pred eEEE-ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEeC
Q 010287 463 VVRR-VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 513 (513)
Q Consensus 463 ~i~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~~ 513 (513)
.+.+ ..|.... ...+.-+..+.++++. ..+|..-.++++-||+.
T Consensus 210 g~fv~~~G~~~r-----~~~i~W~~~p~~~~~~--~pyli~~~~~~iEV~~~ 254 (275)
T PF00780_consen 210 GVFVNKNGEPSR-----KSTIQWSSAPQSVAYS--SPYLIAFSSNSIEVRSL 254 (275)
T ss_pred EEEEcCCCCcCc-----ccEEEcCCchhEEEEE--CCEEEEECCCEEEEEEC
Confidence 4455 2222111 1122235677777774 46888888888988863
No 363
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.97 E-value=0.17 Score=45.33 Aligned_cols=280 Identities=9% Similarity=0.020 Sum_probs=134.5
Q ss_pred CeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccC
Q 010287 136 KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQ 215 (513)
Q Consensus 136 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 215 (513)
+.+.+.|..+++.+-.......+ .+..+|+|+.+....-... =...+....-|.+||..+.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~-----------------~~~~spdgk~~y~a~T~~s--R~~rG~RtDvv~~~D~~TL 77 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLG-----------------NVALSPDGKTIYVAETFYS--RGTRGERTDVVEIWDTQTL 77 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSE-----------------EEEE-TTSSEEEEEEEEEE--ETTEEEEEEEEEEEETTTT
T ss_pred ceEEEEECCCCcEEEEeecccCC-----------------ceeECCCCCEEEEEEEEEe--ccccccceeEEEEEecCcC
Confidence 36888888887766544433221 4567888886622100000 0001123446788887665
Q ss_pred Ccccccceee--EeeccccCCeEEEEeccCCCEEEEE---cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe
Q 010287 216 ETNLVAGCRR--IYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH 290 (513)
Q Consensus 216 ~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 290 (513)
....+..... ..... .....++++.++++++.. -...|.|-|+...+-..++ .. .-|...-
T Consensus 78 ~~~~EI~iP~k~R~~~~--~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei------~~------PGC~~iy 143 (342)
T PF06433_consen 78 SPTGEIEIPPKPRAQVV--PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI------DT------PGCWLIY 143 (342)
T ss_dssp EEEEEEEETTS-B--BS----GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE------EG------TSEEEEE
T ss_pred cccceEecCCcchheec--ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee------cC------CCEEEEE
Confidence 4322111110 00000 112335677788777765 2667777787754432221 11 1133334
Q ss_pred CCCCeEEEEEeCCCcEEEEEcC-CcccccccceeeccccCCCCccccccccccEEEEEEeec-CCEEEEEeCCeEEEEEc
Q 010287 291 PTHCNMLAYSSSKGSIRLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSRDYMTLKLWDI 368 (513)
Q Consensus 291 ~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~l~~~~~~~v~iwd~ 368 (513)
|.++.-|.+.|.||.+.-..+. .|+...+....|....+ ..+..-.++.. +++++..-.|.|+--|+
T Consensus 144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~d-----------p~f~~~~~~~~~~~~~F~Sy~G~v~~~dl 212 (342)
T PF06433_consen 144 PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDD-----------PLFEHPAYSRDGGRLYFVSYEGNVYSADL 212 (342)
T ss_dssp EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS------------B-S--EEETTTTEEEEEBTTSEEEEEEE
T ss_pred ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCc-----------ccccccceECCCCeEEEEecCCEEEEEec
Confidence 5444568899999999988887 44443222223332221 12222334443 34555544588888777
Q ss_pred cCCCCCeeeeecccccc-cccccccccCCccceeeEEEeCCCCEEEEEeC---C-------CcEEEEecCCCCccceeec
Q 010287 369 NMDSGPVATFQVHEHLR-PKLCDLYENDSIFDKFECCLSGDGGRVATGSY---S-------NLFRVFGCSEGSAESTTLE 437 (513)
Q Consensus 369 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d-------g~i~vwd~~~~~~~~~~~~ 437 (513)
.. ........-+-.. .....-...... .-+++++..+.|++.-. + ..|.++|+.+++. +..+.
T Consensus 213 sg--~~~~~~~~~~~~t~~e~~~~WrPGG~---Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr-v~Ri~ 286 (342)
T PF06433_consen 213 SG--DSAKFGKPWSLLTDAEKADGWRPGGW---QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR-VARIP 286 (342)
T ss_dssp TT--SSEEEEEEEESS-HHHHHTTEEE-SS---S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE-EEEEE
T ss_pred cC--CcccccCcccccCccccccCcCCcce---eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeE-EEEEe
Confidence 63 2221111100000 000000000111 15788876665554221 1 2478889988743 33333
Q ss_pred CCCCceeEEEEcCCCC-ceee-ecCCCeEEE
Q 010287 438 ASKNPMRRQVQTPSRP-SRPL-GSLSGVVRR 466 (513)
Q Consensus 438 ~~~~~v~~~~~~~~~~-~l~~-~~~d~~i~~ 466 (513)
. ..++.++.++.+.+ +|.. ...++.+.+
T Consensus 287 l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v 316 (342)
T PF06433_consen 287 L-EHPIDSIAVSQDDKPLLYALSAGDGTLDV 316 (342)
T ss_dssp E-EEEESEEEEESSSS-EEEEEETTTTEEEE
T ss_pred C-CCccceEEEccCCCcEEEEEcCCCCeEEE
Confidence 2 23566888888876 4433 345788888
No 364
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0036 Score=59.19 Aligned_cols=88 Identities=13% Similarity=0.074 Sum_probs=68.8
Q ss_pred eeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCcee-EEEEcCCCCceeeecCCCeEEEe---cCCCCCccc
Q 010287 401 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR-RQVQTPSRPSRPLGSLSGVVRRV---KGADNSALD 476 (513)
Q Consensus 401 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~~~---~~~~~~~~~ 476 (513)
..+.|+|.-..+|++..+|.|.+..+. . +++-++..+..+++ +++|.|||++||.|-.||.|++. ++..+..
T Consensus 24 ~~~ewnP~~dLiA~~t~~gelli~R~n-~-qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~-- 99 (665)
T KOG4640|consen 24 KRIEWNPKMDLIATRTEKGELLIHRLN-W-QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS-- 99 (665)
T ss_pred EEEEEcCccchhheeccCCcEEEEEec-c-ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec--
Confidence 378999999999999999999999888 3 55577777777777 99999999999999999999992 2222221
Q ss_pred cCCccccccCCeeEEEEeC
Q 010287 477 ANGNAFDFSMKLLHLAWHP 495 (513)
Q Consensus 477 ~~~~~~~~~~~i~~~~~sp 495 (513)
..+....+|..+-|+|
T Consensus 100 ---~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 ---FLFSVETDISKGIWDR 115 (665)
T ss_pred ---cccccccchheeeccc
Confidence 1223367888888874
No 365
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.052 Score=50.70 Aligned_cols=140 Identities=10% Similarity=0.102 Sum_probs=89.6
Q ss_pred eEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC--------CEEEEEeCCeEEEE
Q 010287 295 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--------RHILSRDYMTLKLW 366 (513)
Q Consensus 295 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--------~~l~~~~~~~v~iw 366 (513)
-++.++.....++-.|+..|+. +..|+.+. .|.-+.+.|+. +.|+.-++..|.-|
T Consensus 347 lil~~~~~~~~l~klDIE~GKI----VeEWk~~~-------------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfri 409 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKI----VEEWKFED-------------DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRI 409 (644)
T ss_pred eEeeCCCCcCcceeeeccccee----eeEeeccC-------------CcceeeccCCcchhcccccccEEeecCCceEEe
Confidence 3455666677788888888887 44455443 25555666643 23444456889999
Q ss_pred EccCCCC-CeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeE
Q 010287 367 DINMDSG-PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRR 445 (513)
Q Consensus 367 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 445 (513)
|.+-.+. .+...++|+.... +...+.+-. ...++++||.+|.|++||. .+......+.+-..+|..
T Consensus 410 DpRv~~~~kl~~~q~kqy~~k-----------~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~h 476 (644)
T KOG2395|consen 410 DPRVQGKNKLAVVQSKQYSTK-----------NNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKH 476 (644)
T ss_pred cccccCcceeeeeeccccccc-----------cccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceee
Confidence 9886444 2333333332211 001133333 3448999999999999997 454445778889999999
Q ss_pred EEEcCCCCceeeecCCCeE
Q 010287 446 QVQTPSRPSRPLGSLSGVV 464 (513)
Q Consensus 446 ~~~~~~~~~l~~~~~d~~i 464 (513)
+..+.+|++++.-...-.+
T Consensus 477 VdvtadGKwil~Tc~tyLl 495 (644)
T KOG2395|consen 477 VDVTADGKWILATCKTYLL 495 (644)
T ss_pred EEeeccCcEEEEecccEEE
Confidence 9999999998765544333
No 366
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.78 E-value=0.15 Score=43.93 Aligned_cols=195 Identities=14% Similarity=0.116 Sum_probs=104.3
Q ss_pred EeccCCCEEEEE-c-----CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC----------
Q 010287 239 SNNSDGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---------- 302 (513)
Q Consensus 239 ~~~~~~~~l~s~-~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------- 302 (513)
.|+|||.+|... + .|.|-+||.+..-+.. ..+..|.-....+.+.+|| ..++.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrv-------gE~~t~GiGpHev~lm~DG-rtlvvanGGIethpdfgR 191 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRV-------GEFSTHGIGPHEVTLMADG-RTLVVANGGIETHPDFGR 191 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEeccccccee-------cccccCCcCcceeEEecCC-cEEEEeCCceecccccCc
Confidence 389999999975 2 4789999998433222 2566777778899999999 66655422
Q ss_pred --------CCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeE----EEEEcc
Q 010287 303 --------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTL----KLWDIN 369 (513)
Q Consensus 303 --------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v----~iwd~~ 369 (513)
.-.+.+.|..++.++.+.... -..+.-++..++..+||..++.+.. |.- -+--..
T Consensus 192 ~~lNldsMePSlvlld~atG~liekh~Lp------------~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~ 259 (366)
T COG3490 192 TELNLDSMEPSLVLLDAATGNLIEKHTLP------------ASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHF 259 (366)
T ss_pred cccchhhcCccEEEEeccccchhhhccCc------------hhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeec
Confidence 112233343444432221110 0123356888999999998887643 210 011111
Q ss_pred CCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCCCccceeecCCCCceeEEEE
Q 010287 370 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ 448 (513)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~ 448 (513)
..+++++.+...+.....+.. -|-+++.+.+..+++..+ ..+...+||..++..... ..-.. +.-+
T Consensus 260 ~~g~~l~~~~~pee~~~~~an--------YigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~---a~l~d--aaGv 326 (366)
T COG3490 260 RKGEPLEFLDLPEEQTAAFAN--------YIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE---AALPD--AAGV 326 (366)
T ss_pred cCCCcCcccCCCHHHHHHHHh--------hhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec---ccccc--cccc
Confidence 124555544433322111110 022677776555655444 566788999999833211 00000 1112
Q ss_pred cCCCCceeeecCCCeEEE
Q 010287 449 TPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 449 ~~~~~~l~~~~~d~~i~~ 466 (513)
-+.+.-++..+.+|.+++
T Consensus 327 a~~~~gf~vssg~G~~~~ 344 (366)
T COG3490 327 AAAKGGFAVSSGQGRIIF 344 (366)
T ss_pred eeccCceEEecCCceEEe
Confidence 233444555556777776
No 367
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.77 E-value=0.46 Score=44.13 Aligned_cols=119 Identities=13% Similarity=0.201 Sum_probs=53.2
Q ss_pred CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe--CCCCeEEEEEeCCCcEEEEEc-CCcccccccceeecccc
Q 010287 252 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSSKGSIRLIDM-RQSALCDTHSKLFEEQE 328 (513)
Q Consensus 252 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~ 328 (513)
..++.+||+.+.+ ..+.++ +......+..+.|. |+...-|+.+.....|..|-- ..+.-..+.+..+....
T Consensus 221 G~~l~vWD~~~r~-~~Q~id-----Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~ 294 (461)
T PF05694_consen 221 GHSLHVWDWSTRK-LLQTID-----LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK 294 (461)
T ss_dssp --EEEEEETTTTE-EEEEEE-----S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred cCeEEEEECCCCc-EeeEEe-----cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence 5789999998654 343332 22222335566664 444344555555666655543 33332222122221111
Q ss_pred C-----CCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCee
Q 010287 329 A-----PGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVA 376 (513)
Q Consensus 329 ~-----~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~ 376 (513)
. +.-...+..-..-|+.|.+|.|.++|..+.- |.|+.||+..+..+..
T Consensus 295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl 349 (461)
T PF05694_consen 295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKL 349 (461)
T ss_dssp --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EE
T ss_pred cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcE
Confidence 0 0000011122356899999999999999874 9999999986555543
No 368
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.75 E-value=0.0025 Score=36.52 Aligned_cols=34 Identities=35% Similarity=0.536 Sum_probs=29.8
Q ss_pred ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287 276 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 310 (513)
Q Consensus 276 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd 310 (513)
.+..|...|.++.|++.+ .++++++.|+.+++||
T Consensus 7 ~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 345678889999999988 8999999999999996
No 369
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.67 E-value=0.13 Score=37.56 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=42.6
Q ss_pred eEEEEE---eCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC
Q 010287 284 ITSAEF---HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 360 (513)
Q Consensus 284 i~~~~~---~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~ 360 (513)
|+++++ ..++.+.|+.|+.|..|++|+-.. . +..+... ..|.++.-...+++.++-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~----~~Ei~e~-------------~~v~~L~~~~~~~F~Y~l~N 62 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--I----VAEITET-------------DKVTSLCSLGGGRFAYALAN 62 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--E----EEEEecc-------------cceEEEEEcCCCEEEEEecC
Confidence 344444 456668899999999999998432 2 2222222 46777777766554444344
Q ss_pred CeEEEEEcc
Q 010287 361 MTLKLWDIN 369 (513)
Q Consensus 361 ~~v~iwd~~ 369 (513)
|+|-+|+-.
T Consensus 63 GTVGvY~~~ 71 (111)
T PF14783_consen 63 GTVGVYDRS 71 (111)
T ss_pred CEEEEEeCc
Confidence 899888753
No 370
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.068 Score=49.96 Aligned_cols=102 Identities=17% Similarity=0.218 Sum_probs=68.1
Q ss_pred EEEEcCCeEEEEEcCCCcc-eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeec
Q 010287 247 FISADDLRINLWNLEISNQ-SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 325 (513)
Q Consensus 247 l~s~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 325 (513)
|+.-++..|+-||.+-... .+...+.+ .+ .......|++-..+| +|+.|+.+|.|++||- .+...
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~k--qy-~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~A-------- 463 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSK--QY-STKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRA-------- 463 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeecc--cc-ccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhh--------
Confidence 4333899999999985543 11111110 11 113445677766666 8999999999999995 44321
Q ss_pred cccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEcc
Q 010287 326 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 369 (513)
Q Consensus 326 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~ 369 (513)
+..+.+...+|..|..+.+|++|++..+..+-+-++.
T Consensus 464 -------KTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 464 -------KTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred -------hhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 1124455578999999999999998877777777765
No 371
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.66 E-value=0.0051 Score=37.18 Aligned_cols=30 Identities=20% Similarity=0.671 Sum_probs=26.3
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEcc
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQ 144 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~ 144 (513)
..|..++|||..| +++.++.||.|.++.+.
T Consensus 12 ~~v~~~~w~P~md--LiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMD--LIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCC--EEEEEECCCeEEEEECC
Confidence 6799999988544 99999999999999983
No 372
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.52 E-value=0.077 Score=52.62 Aligned_cols=139 Identities=12% Similarity=0.103 Sum_probs=78.7
Q ss_pred ccEEEEEEeecCCEEEEEe-------C--CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCE
Q 010287 341 ASISDIKFARNGRHILSRD-------Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 411 (513)
Q Consensus 341 ~~v~~i~~sp~~~~l~~~~-------~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 411 (513)
..+.+.+++|+|+.++... + ..|.+++.. +.......+.. .+.-.|+|||+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g~~-----------------~t~PsWspDG~~ 410 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEGHS-----------------LTRPSWSLDADA 410 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecCCC-----------------CCCceECCCCCc
Confidence 3578899999999887632 3 456666643 33322222221 126789999887
Q ss_pred EEEEeCC------------CcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE---e--cCCCCCc
Q 010287 412 VATGSYS------------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR---V--KGADNSA 474 (513)
Q Consensus 412 l~~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~---~--~~~~~~~ 474 (513)
|++.... +.+.+.++..+... . .....|..+.|+|||..+|... ++.|.+ . .++. ..
T Consensus 411 lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~-~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~ 484 (591)
T PRK13616 411 VWVVVDGNTVVRVIRDPATGQLARTPVDASAVA-S---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YA 484 (591)
T ss_pred eEEEecCcceEEEeccCCCceEEEEeccCchhh-h---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-ee
Confidence 7766532 23333344332111 1 2245699999999999888765 577777 1 1221 10
Q ss_pred cccCCcc-ccccCCeeEEEEeCCCCEEEEEc
Q 010287 475 LDANGNA-FDFSMKLLHLAWHPSENSIACAA 504 (513)
Q Consensus 475 ~~~~~~~-~~~~~~i~~~~~sp~~~~la~~~ 504 (513)
....... ......+.++.|.+++.+++...
T Consensus 485 l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~ 515 (591)
T PRK13616 485 LTNPREVGPGLGDTAVSLDWRTGDSLVVGRS 515 (591)
T ss_pred ecccEEeecccCCccccceEecCCEEEEEec
Confidence 0000001 12234468899999999665433
No 373
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.51 E-value=0.36 Score=48.08 Aligned_cols=202 Identities=13% Similarity=0.138 Sum_probs=102.1
Q ss_pred CCeEEEEeccCCCEEEEEc-------CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC-C
Q 010287 233 YHINSISNNSDGETFISAD-------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-G 304 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~~-------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g 304 (513)
..+...+++|+|+.++... |..-.+|-...+.....+ .. ....+...|+|++ ..+.+.... .
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l-------t~--g~~~t~PsWspDG-~~lw~v~dg~~ 419 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV-------LE--GHSLTRPSWSLDA-DAVWVVVDGNT 419 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee-------ec--CCCCCCceECCCC-CceEEEecCcc
Confidence 3577889999999887642 333344433222222111 11 2237789999997 666555432 2
Q ss_pred cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccC--CCCCeeeeeccc
Q 010287 305 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM--DSGPVATFQVHE 382 (513)
Q Consensus 305 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~--~~~~~~~~~~~~ 382 (513)
.+++.+...... +......... .. ....+.|..+.|||||..++.-.++.|.+--+.. .+. ..+....
T Consensus 420 ~~~v~~~~~~gq----l~~~~vd~ge-~~---~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~--~~l~~~~ 489 (591)
T PRK13616 420 VVRVIRDPATGQ----LARTPVDASA-VA---SRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ--YALTNPR 489 (591)
T ss_pred eEEEeccCCCce----EEEEeccCch-hh---hccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc--eeecccE
Confidence 233332211100 1111110000 00 0123579999999999998876667777633221 132 2221100
Q ss_pred ccccccccccccCCccc-eeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecC--CCCceeEEEEcCCCCceeeec
Q 010287 383 HLRPKLCDLYENDSIFD-KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPLGS 459 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~ 459 (513)
.... .+.+ +.++.|.+++.++ ++..++.-.+|.+.-.......+.. ...++..++-+++ -+....
T Consensus 490 ~l~~---------~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~ 557 (591)
T PRK13616 490 EVGP---------GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTD 557 (591)
T ss_pred Eeec---------ccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEc
Confidence 0000 0001 2378999999855 5555554555655433333222222 2566777777763 355556
Q ss_pred CCCeEEE
Q 010287 460 LSGVVRR 466 (513)
Q Consensus 460 ~d~~i~~ 466 (513)
.++.+.+
T Consensus 558 ~~g~~~l 564 (591)
T PRK13616 558 ARAVLQL 564 (591)
T ss_pred CCceEEe
Confidence 7777777
No 374
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.51 E-value=0.58 Score=41.95 Aligned_cols=124 Identities=15% Similarity=0.073 Sum_probs=72.0
Q ss_pred eEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecc-cCcc-----ccccccCCeEEEE--EeCCCCeEEEEEeCCCcE
Q 010287 235 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVD-VKPA-----NMEDLTEVITSAE--FHPTHCNMLAYSSSKGSI 306 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~-~~~~-----~~~~~~~~i~~~~--~~~~~~~~l~~~~~dg~i 306 (513)
|..+...++-+.+++-.|+.+.++++..-........ ..+. ........+..++ -...+ ...+.......|
T Consensus 38 I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~-~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEG-SRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeecccccc-ceEEEEEECCEE
Confidence 8888888888888877779999999875443321000 0000 0011122344444 12333 344445556699
Q ss_pred EEEEcCCccccc-ccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCe
Q 010287 307 RLIDMRQSALCD-THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPV 375 (513)
Q Consensus 307 ~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~ 375 (513)
.+|......... +..+.+..+ ..+.+++|. +..++.|......+.|+.+ +...
T Consensus 117 ~i~~~~~~~~~f~~~~ke~~lp-------------~~~~~i~~~--~~~i~v~~~~~f~~idl~~-~~~~ 170 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEISLP-------------DPPSSIAFL--GNKICVGTSKGFYLIDLNT-GSPS 170 (275)
T ss_pred EEEEEECCcccccceeEEEEcC-------------CCcEEEEEe--CCEEEEEeCCceEEEecCC-CCce
Confidence 998876642221 223444433 467888888 6677777777788999985 4443
No 375
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.50 E-value=0.21 Score=43.95 Aligned_cols=144 Identities=11% Similarity=0.083 Sum_probs=86.7
Q ss_pred cEEEEEEeecCCEEEEEe--C--CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC
Q 010287 342 SISDIKFARNGRHILSRD--Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 417 (513)
Q Consensus 342 ~v~~i~~sp~~~~l~~~~--~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 417 (513)
.+.+.+++++++.++... + ..+.++... +.....+.+.. ++...|++++...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~-----------------l~~PS~d~~g~~W~v~~~ 85 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGS-----------------LTRPSWDPDGWVWTVDDG 85 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCc-----------------cccccccCCCCEEEEEcC
Confidence 588899999999887644 3 556665543 33222222221 237789999887777676
Q ss_pred CCcEEEEe-cCCCCccceeecCCC--CceeEEEEcCCCCceeeec---CCCeEEE----ecCCC-CCccccCCccc-ccc
Q 010287 418 SNLFRVFG-CSEGSAESTTLEASK--NPMRRQVQTPSRPSRPLGS---LSGVVRR----VKGAD-NSALDANGNAF-DFS 485 (513)
Q Consensus 418 dg~i~vwd-~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~---~d~~i~~----~~~~~-~~~~~~~~~~~-~~~ 485 (513)
+...+++. ...+......+.... ..|..+.++|||..+|... .++.+.+ ..... +.......... ...
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~ 165 (253)
T PF10647_consen 86 SGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL 165 (253)
T ss_pred CCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence 67777774 333322223333221 2899999999999877654 3577777 22222 11000000011 224
Q ss_pred CCeeEEEEeCCCCEEEEEc
Q 010287 486 MKLLHLAWHPSENSIACAA 504 (513)
Q Consensus 486 ~~i~~~~~sp~~~~la~~~ 504 (513)
..+++++|.+++.+++.+.
T Consensus 166 ~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 166 SDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred CcceeeeecCCCEEEEEeC
Confidence 6899999999999887665
No 376
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.32 E-value=1.5 Score=44.71 Aligned_cols=83 Identities=18% Similarity=0.266 Sum_probs=54.2
Q ss_pred CCeEEEEeccCCCEEEEEcCCeEEEEEcCCC----------cc--eeeecccCcccc-ccccCCeEEEEEeCCC--CeEE
Q 010287 233 YHINSISNNSDGETFISADDLRINLWNLEIS----------NQ--SFNIVDVKPANM-EDLTEVITSAEFHPTH--CNML 297 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~----------~~--~~~~~~~~~~~~-~~~~~~i~~~~~~~~~--~~~l 297 (513)
..|..+.++++|..++..+...|.|-.+-.. +. ..+.+.+....+ ..+...|..+.|+|.+ ...|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 4588999999999999875555666555321 11 111111111111 2345678999999973 3788
Q ss_pred EEEeCCCcEEEEEcCCcc
Q 010287 298 AYSSSKGSIRLIDMRQSA 315 (513)
Q Consensus 298 ~~~~~dg~i~vwd~~~~~ 315 (513)
+.-..|+.+|+||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 889999999999997544
No 377
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.24 E-value=0.87 Score=41.13 Aligned_cols=97 Identities=12% Similarity=0.181 Sum_probs=58.5
Q ss_pred ccEEEEEEeecCCEEEEEeC--CeEEEEEccC-CCCCee-----eeecccccccccccccccCCccceeeEEEeCCCCEE
Q 010287 341 ASISDIKFARNGRHILSRDY--MTLKLWDINM-DSGPVA-----TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 412 (513)
Q Consensus 341 ~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 412 (513)
..-+.|+||||++.|+.++. +.|.-|++.. .+.... .+....+.. + .++...+|.+.
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~P---------D------G~~vDadG~lw 227 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLP---------D------GMAVDADGNLW 227 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCC---------C------ceEEeCCCCEE
Confidence 44678999999998888764 8888887762 111110 011111110 0 57788888887
Q ss_pred EEEeCCC-cEEEEecCCCCccceeecCCCCceeEEEE-cCCCCc
Q 010287 413 ATGSYSN-LFRVFGCSEGSAESTTLEASKNPMRRQVQ-TPSRPS 454 (513)
Q Consensus 413 ~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~ 454 (513)
+++-.+| .|.+|+.. + ++...++.....+.+++| .++.+.
T Consensus 228 ~~a~~~g~~v~~~~pd-G-~l~~~i~lP~~~~t~~~FgG~~~~~ 269 (307)
T COG3386 228 VAAVWGGGRVVRFNPD-G-KLLGEIKLPVKRPTNPAFGGPDLNT 269 (307)
T ss_pred EecccCCceEEEECCC-C-cEEEEEECCCCCCccceEeCCCcCE
Confidence 6555444 89999998 5 555566555455556666 344443
No 378
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.12 E-value=0.0092 Score=59.00 Aligned_cols=116 Identities=11% Similarity=0.100 Sum_probs=67.0
Q ss_pred CCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc---CCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccc
Q 010287 203 GVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 278 (513)
Q Consensus 203 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 278 (513)
.-|.+.+|++...+.........+........+.-+.|.| +.-++..+ .+++|++...++..+ . -+.
T Consensus 151 ~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~-------l~r 221 (1283)
T KOG1916|consen 151 LVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--S-------LFR 221 (1283)
T ss_pred HhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH--H-------HHH
Confidence 3466778887654443333222222222223344455554 55566666 688888888765443 1 223
Q ss_pred cccCCeEEEE-----------EeCCCCeEEEEEeCCCcEEEEEcC-Ccccccccceeecccc
Q 010287 279 DLTEVITSAE-----------FHPTHCNMLAYSSSKGSIRLIDMR-QSALCDTHSKLFEEQE 328 (513)
Q Consensus 279 ~~~~~i~~~~-----------~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~ 328 (513)
+|..++..++ .+||| +.|++++.||.++.|.+. ++....++...++.+.
T Consensus 222 sHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 222 SHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred hcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 4555544433 58999 999999999999998764 3333334445555543
No 379
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.11 E-value=1.6 Score=42.92 Aligned_cols=28 Identities=14% Similarity=0.026 Sum_probs=22.9
Q ss_pred ceEEEeecCCeEEEEEccCceeeeeecc
Q 010287 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (513)
Q Consensus 127 ~~l~s~s~d~~i~vw~~~~~~~~~~~~~ 154 (513)
..++.++.++.|.-+|.++|+.......
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 4788888999999999999987766543
No 380
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.04 E-value=2.1 Score=43.82 Aligned_cols=101 Identities=14% Similarity=0.109 Sum_probs=57.7
Q ss_pred ccceeeEEEeCC-CCEEEEEeC----------CCcEEEEecCCCCccceeec--CCCCceeEEEEcCCCCceeeecCCCe
Q 010287 397 IFDKFECCLSGD-GGRVATGSY----------SNLFRVFGCSEGSAESTTLE--ASKNPMRRQVQTPSRPSRPLGSLSGV 463 (513)
Q Consensus 397 ~~~v~~~~~s~~-~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~ 463 (513)
...+.++.|..| +.++++|+. .|.|.+|.....+.+. ... .-.+.+.++.. -+|+++|. -+..
T Consensus 774 ~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~-~v~e~~v~Gav~aL~~-fngkllA~--In~~ 849 (1096)
T KOG1897|consen 774 ALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLE-LVAETVVKGAVYALVE-FNGKLLAG--INQS 849 (1096)
T ss_pred eeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCcee-eeeeeeeccceeehhh-hCCeEEEe--cCcE
Confidence 334556778888 677777753 4778888877632221 111 11233333322 25566554 4677
Q ss_pred EEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc
Q 010287 464 VRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 504 (513)
Q Consensus 464 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 504 (513)
|++++-.... .......+..++..+...-.++.+|+|.
T Consensus 850 vrLye~t~~~---eLr~e~~~~~~~~aL~l~v~gdeI~VgD 887 (1096)
T KOG1897|consen 850 VRLYEWTTER---ELRIECNISNPIIALDLQVKGDEIAVGD 887 (1096)
T ss_pred EEEEEccccc---eehhhhcccCCeEEEEEEecCcEEEEee
Confidence 8883222211 1122234577888888888899888886
No 381
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.98 E-value=1.6 Score=41.90 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=25.1
Q ss_pred ccEEEEEEcCCCCEEEee-cCCC----cEEEEEeeCCCC
Q 010287 36 DIISAIEFDKSGDHLATG-DRGG----RVVLFERTDTRD 69 (513)
Q Consensus 36 ~~V~~v~~sp~g~~latg-~~dg----~i~iw~~~~~~~ 69 (513)
..+...++||+|++||.+ +..| .|+++|+.+++.
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~ 162 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF 162 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC
Confidence 355578899999999865 3334 499999887754
No 382
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.93 E-value=1 Score=39.28 Aligned_cols=185 Identities=10% Similarity=0.132 Sum_probs=106.0
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
..|.++.|+| +.+.|++..+...-.||=..+|++.....+..-
T Consensus 86 ~nvS~LTynp--~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~----------------------------------- 128 (316)
T COG3204 86 ANVSSLTYNP--DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF----------------------------------- 128 (316)
T ss_pred ccccceeeCC--CcceEEEecCCCceEEEEecCCceEEEeccccc-----------------------------------
Confidence 5599999966 556788877777777776667776654332210
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
...-.+.+..++++.++- .+..+.++.+...........
T Consensus 129 ----------------------------------------~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~ 168 (316)
T COG3204 129 ----------------------------------------SDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKV 168 (316)
T ss_pred ----------------------------------------CChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccc
Confidence 112345666666666665 588888887765543332211
Q ss_pred cC--ccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287 272 VK--PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 349 (513)
Q Consensus 272 ~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 349 (513)
.+ .............++|.|.+ ..|..+-+..-+.||.......... ......+... ..-....+.++.|+
T Consensus 169 ~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~-~~~~~~~~~~-----~~~f~~DvSgl~~~ 241 (316)
T COG3204 169 QKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLS-VHASLDPTAD-----RDLFVLDVSGLEFN 241 (316)
T ss_pred eEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccc-cccccCcccc-----cceEeeccccceec
Confidence 10 01112225567899999998 7777788888788877653221000 0000000000 00011357788888
Q ss_pred e-cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccc
Q 010287 350 R-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH 383 (513)
Q Consensus 350 p-~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~ 383 (513)
+ .+.+|+-+.+ +.+.-.|.. +.++..+..+.+
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~--G~~~~~lsL~~g 275 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLS--GEVIELLSLTKG 275 (316)
T ss_pred CCCCcEEEEecCCceEEEEecC--CCeeeeEEeccC
Confidence 7 4555555665 777777776 666665554443
No 383
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.90 E-value=0.66 Score=38.87 Aligned_cols=143 Identities=11% Similarity=0.152 Sum_probs=82.4
Q ss_pred cCCeEEEEeccCCCEEEEE-c---------CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe
Q 010287 232 DYHINSISNNSDGETFISA-D---------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS 301 (513)
Q Consensus 232 ~~~v~~~~~~~~~~~l~s~-~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 301 (513)
..+.+.-..+|+|++++.. . .|.++.|-.. .+.-. +...-.--+.++|+.+...+.++-+
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~--------i~~~v~IsNgl~Wd~d~K~fY~iDs 177 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVEL--------IWNCVGISNGLAWDSDAKKFYYIDS 177 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCcee--------eehhccCCccccccccCcEEEEEcc
Confidence 3445667789999996643 2 2445555433 11111 1111122357889888755666777
Q ss_pred CCCcEEEEE--cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeee
Q 010287 302 SKGSIRLID--MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATF 378 (513)
Q Consensus 302 ~dg~i~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~ 378 (513)
.+-.|.-|| ..+|....+. ..++..+... +. ....-.++...+|.+.++.-. ++|...|..+ ++.+.++
T Consensus 178 ln~~V~a~dyd~~tG~~snr~-~i~dlrk~~~----~e--~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t-GK~L~ei 249 (310)
T KOG4499|consen 178 LNYEVDAYDYDCPTGDLSNRK-VIFDLRKSQP----FE--SLEPDGMTIDTEGNLYVATFNGGTVQKVDPTT-GKILLEI 249 (310)
T ss_pred CceEEeeeecCCCcccccCcc-eeEEeccCCC----cC--CCCCCcceEccCCcEEEEEecCcEEEEECCCC-CcEEEEE
Confidence 788887787 6777654321 1222211100 00 011223444557777776544 9999999997 9999988
Q ss_pred ecccccccccccccccCCccceeeEEEeC
Q 010287 379 QVHEHLRPKLCDLYENDSIFDKFECCLSG 407 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 407 (513)
..+... +++++|--
T Consensus 250 klPt~q---------------itsccFgG 263 (310)
T KOG4499|consen 250 KLPTPQ---------------ITSCCFGG 263 (310)
T ss_pred EcCCCc---------------eEEEEecC
Confidence 877554 45888864
No 384
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.83 E-value=1.3 Score=39.75 Aligned_cols=152 Identities=12% Similarity=0.141 Sum_probs=81.3
Q ss_pred ccEEEEEEeecCCEEEEEeCCeE-EEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC
Q 010287 341 ASISDIKFARNGRHILSRDYMTL-KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 419 (513)
Q Consensus 341 ~~v~~i~~sp~~~~l~~~~~~~v-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 419 (513)
+.+..+..++||++++++..|.+ .-||-- ............ ..+.++.|+|++.+.+.+ ..|
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G--~~~w~~~~r~~~--------------~riq~~gf~~~~~lw~~~-~Gg 207 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPG--QTTWQPHNRNSS--------------RRIQSMGFSPDGNLWMLA-RGG 207 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEEE--SS--------------S-EEEEEE-TTS-EEEEE-TTT
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCC--CccceEEccCcc--------------ceehhceecCCCCEEEEe-CCc
Confidence 67888889999999999987554 466643 111222111111 014489999998876654 788
Q ss_pred cEEEEecCCCCcc----ceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeC
Q 010287 420 LFRVFGCSEGSAE----STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP 495 (513)
Q Consensus 420 ~i~vwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 495 (513)
.|++=+....... ..........+..+++.+++...|+|+....++-.++.+.+..... ........+.+.|.+
T Consensus 208 ~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~--~~~~~~n~~~i~f~~ 285 (302)
T PF14870_consen 208 QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRV--GENVPSNLYRIVFVN 285 (302)
T ss_dssp EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GG--GTTSSS---EEEEEE
T ss_pred EEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECcc--ccCCCCceEEEEEcC
Confidence 8887762211111 1111122334678899999888888875544444666666632211 122356789999998
Q ss_pred CCCEEEEEcCCcEEEE
Q 010287 496 SENSIACAASNSLYMY 511 (513)
Q Consensus 496 ~~~~la~~~~~~~~i~ 511 (513)
+.+-+|.|.++-+.-|
T Consensus 286 ~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 286 PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp TTEEEEE-STTEEEEE
T ss_pred CCceEEECCCcEEEEe
Confidence 8888888888776655
No 385
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.78 E-value=1.4 Score=39.61 Aligned_cols=238 Identities=13% Similarity=0.098 Sum_probs=110.7
Q ss_pred cCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCcccccc-ccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287 232 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLID 310 (513)
Q Consensus 232 ~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd 310 (513)
...+..|.|..+..-+++|..+.| +....+....+.... .... ......++.|..+ ..+++ +..+.|. .
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~~g~i--l~T~DGG~tW~~~~~---~~~~~~~~~l~~I~f~~~--~g~iv-G~~g~ll--~ 85 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGAYGTI--LKTTDGGKTWQPVSL---DLDNPFDYHLNSISFDGN--EGWIV-GEPGLLL--H 85 (302)
T ss_dssp SS-EEEEEESSSS-EEEEETTTEE--EEESSTTSS-EE--------S-----EEEEEEEETT--EEEEE-EETTEEE--E
T ss_pred CCceEEEEEecCCEEEEEecCCEE--EEECCCCcccccccc---CCCccceeeEEEEEecCC--ceEEE-cCCceEE--E
Confidence 346889999977788888877754 444445544432211 1111 1234567777654 44554 4455432 2
Q ss_pred cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeeccccccccccc
Q 010287 311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCD 390 (513)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 390 (513)
...+-...+.+.. .. . ..+....+....++..++++..|. ||.....++.-+.+.....
T Consensus 86 T~DgG~tW~~v~l-~~-~----------lpgs~~~i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~~~~~~------- 144 (302)
T PF14870_consen 86 TTDGGKTWERVPL-SS-K----------LPGSPFGITALGDGSAELAGDRGA--IYRTTDGGKTWQAVVSETS------- 144 (302)
T ss_dssp ESSTTSS-EE-----T-T-----------SS-EEEEEEEETTEEEEEETT----EEEESSTTSSEEEEE-S---------
T ss_pred ecCCCCCcEEeec-CC-C----------CCCCeeEEEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEcccCCc-------
Confidence 2222221111110 00 0 002233444444444444444343 4444433444443322111
Q ss_pred ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEec--
Q 010287 391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK-- 468 (513)
Q Consensus 391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~-- 468 (513)
-.+..+.-++||++++++.....+.-||.-.. .-...-......+..+.|.|++.+.+.+ ..|.++..+
T Consensus 145 -------gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~ 215 (302)
T PF14870_consen 145 -------GSINDITRSSDGRYVAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP 215 (302)
T ss_dssp ---------EEEEEE-TTS-EEEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T
T ss_pred -------ceeEeEEECCCCcEEEEECcccEEEEecCCCc-cceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCC
Confidence 01347778899999998877666667775422 1112223356789999999998876655 788888822
Q ss_pred -CCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEE
Q 010287 469 -GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYM 510 (513)
Q Consensus 469 -~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i 510 (513)
..+.+.... .....-.-.+..++|.+++...|+++.+.++.
T Consensus 216 ~~~~~w~~~~-~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~ 257 (302)
T PF14870_consen 216 DDGETWSEPI-IPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV 257 (302)
T ss_dssp TEEEEE---B--TTSS--S-EEEEEESSSS-EEEEESTT-EEE
T ss_pred CCcccccccc-CCcccCceeeEEEEecCCCCEEEEeCCccEEE
Confidence 111111000 00111133489999999999999888876654
No 386
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.72 E-value=0.23 Score=48.93 Aligned_cols=109 Identities=13% Similarity=0.065 Sum_probs=68.4
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEE--cCCCCceeeecCCCeEEEecCC-------CC-
Q 010287 403 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ--TPSRPSRPLGSLSGVVRRVKGA-------DN- 472 (513)
Q Consensus 403 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~~~~~~-------~~- 472 (513)
+.-+.-++.-++-+....+.|||...+..+....-...++|..+.| .|+++.+++.+....|.++... .+
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~ 114 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS 114 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence 3344455555555556789999998774222111144677888766 6899999999999999882111 11
Q ss_pred CccccCCcccccc-CCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287 473 SALDANGNAFDFS-MKLLHLAWHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 473 ~~~~~~~~~~~~~-~~i~~~~~sp~~~~la~~~~~~~~i~~ 512 (513)
+..-......+|+ .+|.+..|.++|. |++|+.+.++||.
T Consensus 115 w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~sGNqlfv~d 154 (631)
T PF12234_consen 115 WAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGSGNQLFVFD 154 (631)
T ss_pred cceeEEEEeecCCCCCccceeEecCCe-EEEEeCCEEEEEC
Confidence 1000011112343 6899999999986 6677788888874
No 387
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.60 E-value=0.087 Score=53.65 Aligned_cols=103 Identities=14% Similarity=0.233 Sum_probs=72.8
Q ss_pred eEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCC
Q 010287 295 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG 373 (513)
Q Consensus 295 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~ 373 (513)
..++.|+..|.+-..|.... +.. ...+. .-.++|++++|+.+|..++.|-. |.|.+||+.. ++
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n-L~~----~~~ne----------~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k 163 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN-LGP----LHQNE----------RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AK 163 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc-cch----hhcCC----------ccCCcceeeEecCCCceeccccCCCcEEEEEccC-Cc
Confidence 57889999999999887653 110 00010 11268999999999999999865 9999999996 78
Q ss_pred CeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287 374 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 427 (513)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 427 (513)
+++.+..+..+.. .+.-+.+..++..++++...|. +|.+.
T Consensus 164 ~l~~i~e~~ap~t------------~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 164 ILKVITEHGAPVT------------GVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ceeeeeecCCccc------------eEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 8888877665432 1335566667777888887776 56543
No 388
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.45 E-value=0.44 Score=48.45 Aligned_cols=92 Identities=16% Similarity=0.253 Sum_probs=51.6
Q ss_pred cCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC-CCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCC
Q 010287 394 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE-GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADN 472 (513)
Q Consensus 394 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~ 472 (513)
+...+.|..+.++|+|.+|+..|..| |.|-.+.. .+.. ..+++....+.+-.+.-+..++.+.
T Consensus 81 ~~~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~-~~~~~g~~~i~Crt~~v~~~~~~~~-------------- 144 (717)
T PF10168_consen 81 NPPLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKN-GEFEDGKKEINCRTVPVDERFFTSN-------------- 144 (717)
T ss_pred CCCceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCcc-ccccCCCcceeEEEEEechhhccCC--------------
Confidence 34556788999999999999888766 44545432 1111 1222223333333333332222111
Q ss_pred CccccCCccccccCCeeEEEEeCCC---CE-EEEEcCCcEEEEe
Q 010287 473 SALDANGNAFDFSMKLLHLAWHPSE---NS-IACAASNSLYMYY 512 (513)
Q Consensus 473 ~~~~~~~~~~~~~~~i~~~~~sp~~---~~-la~~~~~~~~i~~ 512 (513)
.+..|..+.|||.+ .. ++-.+++.+++|+
T Consensus 145 -----------~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~ 177 (717)
T PF10168_consen 145 -----------SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYD 177 (717)
T ss_pred -----------CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEe
Confidence 24567778888774 33 4466677777776
No 389
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.34 E-value=1.7 Score=41.92 Aligned_cols=70 Identities=9% Similarity=-0.010 Sum_probs=45.2
Q ss_pred EEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC
Q 010287 237 SISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 313 (513)
Q Consensus 237 ~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 313 (513)
.+.|+|....|+.- ....-.+++.......++. .+ ...+.|.|.+|.+||.+++++.+..=.-.+||-..
T Consensus 117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVka------Di-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKA------DI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cccccCCCceEEEEecCceeEeeeeeeCCceEEE------ec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 45688988887764 3222234565544433321 22 23677999999999977777767666778898544
No 390
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.34 E-value=2.1 Score=38.74 Aligned_cols=91 Identities=8% Similarity=0.098 Sum_probs=56.5
Q ss_pred ccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC--cccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEE
Q 010287 280 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 357 (513)
Q Consensus 280 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~ 357 (513)
+-...+.++|+||+..++++=+..+.|.-|++.. +....+..... .....+..-.++...+|.+.++
T Consensus 161 ~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~-----------~~~~~G~PDG~~vDadG~lw~~ 229 (307)
T COG3386 161 DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD-----------FDEEPGLPDGMAVDADGNLWVA 229 (307)
T ss_pred cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE-----------ccCCCCCCCceEEeCCCCEEEe
Confidence 3445678999999944445545568888887753 22211111111 1112255666788888888865
Q ss_pred EeC--CeEEEEEccCCCCCeeeeecccc
Q 010287 358 RDY--MTLKLWDINMDSGPVATFQVHEH 383 (513)
Q Consensus 358 ~~~--~~v~iwd~~~~~~~~~~~~~~~~ 383 (513)
+-. +.|.+|+.+ ++.+..+..+..
T Consensus 230 a~~~g~~v~~~~pd--G~l~~~i~lP~~ 255 (307)
T COG3386 230 AVWGGGRVVRFNPD--GKLLGEIKLPVK 255 (307)
T ss_pred cccCCceEEEECCC--CcEEEEEECCCC
Confidence 433 499999987 788887776643
No 391
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.29 E-value=2.9 Score=40.13 Aligned_cols=114 Identities=15% Similarity=0.252 Sum_probs=66.7
Q ss_pred eEEEEeccCCCEEEEE-c-C----CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC----
Q 010287 235 INSISNNSDGETFISA-D-D----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---- 304 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~-~-d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---- 304 (513)
+...+++|++++++.+ + . ..|+++|+++++..... +.. .....+.|.+++ +.|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-------i~~--~~~~~~~W~~d~-~~~~y~~~~~~~~~ 195 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-------IEN--PKFSSVSWSDDG-KGFFYTRFDEDQRT 195 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-------EEE--EESEEEEECTTS-SEEEEEECSTTTSS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-------ccc--cccceEEEeCCC-CEEEEEEeCccccc
Confidence 4467899999999976 3 3 34999999987544321 111 112349999998 5554444332
Q ss_pred -------cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe----C-CeEEEEEccC
Q 010287 305 -------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----Y-MTLKLWDINM 370 (513)
Q Consensus 305 -------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~----~-~~v~iwd~~~ 370 (513)
.|..|++.+..... ...++..... .....+..++|+++|+... . ..+.+.++..
T Consensus 196 ~~~~~~~~v~~~~~gt~~~~d--~lvfe~~~~~----------~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 196 SDSGYPRQVYRHKLGTPQSED--ELVFEEPDEP----------FWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp -CCGCCEEEEEEETTS-GGG---EEEEC-TTCT----------TSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred ccCCCCcEEEEEECCCChHhC--eeEEeecCCC----------cEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 26666665544321 2344443321 1256788999999988632 2 4577777764
No 392
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.21 E-value=1.7 Score=37.09 Aligned_cols=63 Identities=11% Similarity=0.080 Sum_probs=38.0
Q ss_pred eccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287 240 NNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 311 (513)
Q Consensus 240 ~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~ 311 (513)
..+++..+..| .|++.+..|..+.....+. +.......+.+..|-. ..|..+...|.+.--..
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVyks--------kcgG~~f~sP~i~~g~-~sly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKS--------KCGGGTFVSPVIAPGD-GSLYAAITAGAVLAVTK 164 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEec--------ccCCceeccceecCCC-ceEEEEeccceEEEEcc
Confidence 45678888888 7999999999876655431 2223333455566633 34455556665544433
No 393
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.96 E-value=0.12 Score=52.65 Aligned_cols=97 Identities=13% Similarity=0.101 Sum_probs=65.9
Q ss_pred cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 351 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 351 ~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
.+..++.|++ |.+-..|...+-.+ .|.+. ....+|++++|+.+|..++.|-.+|.|.+||...+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~-----~~~ne----------~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGP-----LHQNE----------RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccch-----hhcCC----------ccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 5667888887 88888887742111 12211 11124679999999999999999999999999976
Q ss_pred CccceeecCCCCceeEEEE---cCCCCceeeecCCCe
Q 010287 430 SAESTTLEASKNPMRRQVQ---TPSRPSRPLGSLSGV 463 (513)
Q Consensus 430 ~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~d~~ 463 (513)
++.+.+..+..|...+.+ ..++..++++..-|.
T Consensus 163 -k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 163 -KILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred -cceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence 555667666666555443 344445667666663
No 394
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.83 E-value=1.4 Score=43.69 Aligned_cols=116 Identities=10% Similarity=0.139 Sum_probs=71.0
Q ss_pred eEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe--CCCCeEEEEEeCCCcEEEEEc
Q 010287 235 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSSKGSIRLIDM 311 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~dg~i~vwd~ 311 (513)
+.-+.-+.-++.-++- +..++.|||.+.+....+. .+ ...+.|.++.|. |++ +.+++.+....|.+|--
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~------~f-~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE------SF-SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQ 103 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEee------ee-cCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEc
Confidence 3344444444444444 5788999999866533321 22 346789999985 677 77888889999998854
Q ss_pred CC-----cccccccceeeccccCCCCcccccccc-ccEEEEEEeecCCEEEEEeCCeEEEEEcc
Q 010287 312 RQ-----SALCDTHSKLFEEQEAPGTRSFFTEII-ASISDIKFARNGRHILSRDYMTLKLWDIN 369 (513)
Q Consensus 312 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~sp~~~~l~~~~~~~v~iwd~~ 369 (513)
.. .......++.++. ..|. .+|.+..|-++|.++++++ ..+.|+|-.
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i----------~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk~ 156 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDI----------SSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDKW 156 (631)
T ss_pred cchhhhcCCcccceeEEEEe----------ecCCCCCccceeEecCCeEEEEeC-CEEEEECCC
Confidence 21 1111122222222 1222 4688999999887776544 578888754
No 395
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.64 E-value=0.15 Score=29.87 Aligned_cols=33 Identities=21% Similarity=0.598 Sum_probs=27.4
Q ss_pred CCeEEEEEeCCCC--eEEEEEeCCCcEEEEEcCCc
Q 010287 282 EVITSAEFHPTHC--NMLAYSSSKGSIRLIDMRQS 314 (513)
Q Consensus 282 ~~i~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~ 314 (513)
+.|.++.|+|... .+|+.+-..|.|.++|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3588999998763 58888888999999999863
No 396
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.42 E-value=3.3 Score=36.48 Aligned_cols=155 Identities=12% Similarity=0.124 Sum_probs=86.5
Q ss_pred CeEEEEeccCCCEEEEEc--CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE-
Q 010287 234 HINSISNNSDGETFISAD--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID- 310 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd- 310 (513)
.+.+.+++++++.++... ++.-.+|-...+.....+ + ....+....|++++ .+.+....+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-------~--~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-------L--TGGSLTRPSWDPDG-WVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-------c--cCCccccccccCCC-CEEEEEcCCCceEEEEe
Confidence 478899999999877642 444444444433332211 1 23367888999997 7777666666667664
Q ss_pred cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe----CCeEEEEEccCCCCC-eeeeecccccc
Q 010287 311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----YMTLKLWDINMDSGP-VATFQVHEHLR 385 (513)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~----~~~v~iwd~~~~~~~-~~~~~~~~~~~ 385 (513)
...+.... ...+... ..+.|..+.+||||..++.-. ++.|.+--+..+..- ...+.......
T Consensus 95 ~~~g~~~~---~~v~~~~----------~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~ 161 (253)
T PF10647_consen 95 SASGTGEP---VEVDWPG----------LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA 161 (253)
T ss_pred cCCCccee---EEecccc----------cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec
Confidence 33333211 1111111 012699999999999887632 378887766532221 11111110000
Q ss_pred cccccccccCCccceeeEEEeCCCCEEEEEeCCC
Q 010287 386 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 419 (513)
Q Consensus 386 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 419 (513)
. .....++.+.|.+++.+++.+...+
T Consensus 162 ~--------~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 162 P--------PLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred c--------cccCcceeeeecCCCEEEEEeCCCC
Confidence 0 0111356899999998877665433
No 397
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.35 E-value=4.8 Score=38.07 Aligned_cols=157 Identities=11% Similarity=0.114 Sum_probs=100.3
Q ss_pred eEEEEeccCCCEEEEE-c---CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287 235 INSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 310 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~-~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd 310 (513)
...++++++++.+..+ . ++++.+.|..+....... .....+ ..+++.|++...+++-..++.|.+.|
T Consensus 118 P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~--------~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~ 188 (381)
T COG3391 118 PVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI--------PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVID 188 (381)
T ss_pred CceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE--------ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEe
Confidence 5678899999888876 3 578888887765544331 111233 88999999954666666899999999
Q ss_pred cCCccccc-ccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC----CeEEEEEccCCCCCeee-eeccccc
Q 010287 311 MRQSALCD-THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVAT-FQVHEHL 384 (513)
Q Consensus 311 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~----~~v~iwd~~~~~~~~~~-~~~~~~~ 384 (513)
..+..... ........ ......+.++|+|.++....+ +.+...|... +..... .......
T Consensus 189 ~~~~~v~~~~~~~~~~~-------------~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~~~~ 254 (381)
T COG3391 189 TSGNSVVRGSVGSLVGV-------------GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVGSGA 254 (381)
T ss_pred CCCcceecccccccccc-------------CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceEEEeccccccCC
Confidence 76654320 00000111 123466889999997777543 4788888775 333332 2221110
Q ss_pred ccccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCC
Q 010287 385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEG 429 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~ 429 (513)
-..+.++|+|+++.+.. ..+.+.+-|..+.
T Consensus 255 ---------------~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 255 ---------------PRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred ---------------CCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 12688999999988774 4488888888765
No 398
>PRK13684 Ycf48-like protein; Provisional
Probab=94.24 E-value=4.5 Score=37.38 Aligned_cols=153 Identities=9% Similarity=0.040 Sum_probs=86.6
Q ss_pred ccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCc
Q 010287 341 ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 420 (513)
Q Consensus 341 ~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 420 (513)
+.+.++.+.|++.+++++..|.+..- .+..++........... .++.+.+.++++.++++. .|.
T Consensus 173 g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~~~~~~~--------------~l~~i~~~~~g~~~~vg~-~G~ 236 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPHQRNSSR--------------RLQSMGFQPDGNLWMLAR-GGQ 236 (334)
T ss_pred ceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEeeCCCcc--------------cceeeeEcCCCCEEEEec-CCE
Confidence 56888999999988888877755432 11112223222221110 134788999998777654 576
Q ss_pred EEEEecCCCCccc-eeec--CCCCceeEEEEcCCCCceeeecCCCeEEE-ecCCCCCccccCCccccccCCeeEEEEeCC
Q 010287 421 FRVFGCSEGSAES-TTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLAWHPS 496 (513)
Q Consensus 421 i~vwd~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 496 (513)
+++=....+..-. .... .....+..+.+.+++..++.+ .+|.+.. ..+..-+...... .......+.+.|..+
T Consensus 237 ~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~S~d~G~tW~~~~~~--~~~~~~~~~~~~~~~ 313 (334)
T PRK13684 237 IRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLVSKDGGKTWEKDPVG--EEVPSNFYKIVFLDP 313 (334)
T ss_pred EEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEEeCCCCCCCeECCcC--CCCCcceEEEEEeCC
Confidence 6432233321111 0111 122346678888887766555 5676666 3433344211110 112346888999988
Q ss_pred CCEEEEEcCCcEEEEe
Q 010287 497 ENSIACAASNSLYMYY 512 (513)
Q Consensus 497 ~~~la~~~~~~~~i~~ 512 (513)
++.+|+|..+.|..|.
T Consensus 314 ~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 314 EKGFVLGQRGVLLRYV 329 (334)
T ss_pred CceEEECCCceEEEec
Confidence 8999988888777664
No 399
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.18 E-value=0.19 Score=29.47 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=26.6
Q ss_pred ccEEEEEEcCC-C--CEEEeecCCCcEEEEEeeC
Q 010287 36 DIISAIEFDKS-G--DHLATGDRGGRVVLFERTD 66 (513)
Q Consensus 36 ~~V~~v~~sp~-g--~~latg~~dg~i~iw~~~~ 66 (513)
++|.++.|||. + ++||.+-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 47899999985 4 6999999999999999763
No 400
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.09 E-value=2.8 Score=42.19 Aligned_cols=74 Identities=7% Similarity=0.148 Sum_probs=50.4
Q ss_pred CCeEEEEec--cCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCC--Ce---EEEEEeCCC
Q 010287 233 YHINSISNN--SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH--CN---MLAYSSSKG 304 (513)
Q Consensus 233 ~~v~~~~~~--~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~---~l~~~~~dg 304 (513)
..+++++++ ...++||++ ....|.||-+......... . .-..+...|.+++|-++. +. .+++++-.|
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~---~--~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G 238 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH---V--PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISG 238 (717)
T ss_pred CceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc---c--cccccccCCCeeEeecCCCCCccceEEEEEeccC
Confidence 358899998 778888888 5777888766542211110 0 112356778899997654 12 788899999
Q ss_pred cEEEEEc
Q 010287 305 SIRLIDM 311 (513)
Q Consensus 305 ~i~vwd~ 311 (513)
.+.+|++
T Consensus 239 ~v~~~~I 245 (717)
T PF08728_consen 239 EVWTFKI 245 (717)
T ss_pred cEEEEEE
Confidence 9998887
No 401
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=93.86 E-value=9.7 Score=39.86 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=51.5
Q ss_pred CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287 233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 312 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 312 (513)
+....+.|.++...|+.++...+.++|+++......+ ........|.++.-+|..+..++.. ....|...|+.
T Consensus 204 s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l------~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~ 276 (765)
T PF10214_consen 204 SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYL------VTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVK 276 (765)
T ss_pred CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchh------ccCCChhheeeEEecCCccceEEEE-ecCeEEEEEcc
Confidence 3356788999988999998889999999866542212 1233457789999888843444443 33678778877
Q ss_pred Cc
Q 010287 313 QS 314 (513)
Q Consensus 313 ~~ 314 (513)
..
T Consensus 277 ~~ 278 (765)
T PF10214_consen 277 SS 278 (765)
T ss_pred CC
Confidence 63
No 402
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.86 E-value=7.2 Score=39.42 Aligned_cols=166 Identities=13% Similarity=0.130 Sum_probs=89.6
Q ss_pred CCEEEEEcCCeEEEEEcCCCcceee-----ecccCccccc---------cccCCeEEEEEe--CCCCeEEEEEeCCCcEE
Q 010287 244 GETFISADDLRINLWNLEISNQSFN-----IVDVKPANME---------DLTEVITSAEFH--PTHCNMLAYSSSKGSIR 307 (513)
Q Consensus 244 ~~~l~s~~d~~i~vwd~~~~~~~~~-----~~~~~~~~~~---------~~~~~i~~~~~~--~~~~~~l~~~~~dg~i~ 307 (513)
..+++.+..+.|.||++........ .+..+|.... .....|+.|... -.. ..|+.|..||.|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~-EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGE-EVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCe-eEEEEEecCCeEE
Confidence 6788888889999999875433221 0111110000 011224444332 233 6889999999999
Q ss_pred EEEcCCcccccccceeeccccC-----CCCc-cccccccccEEEEEEe--ecCCEEEEEeC-CeEEEEEccCCCCCeeee
Q 010287 308 LIDMRQSALCDTHSKLFEEQEA-----PGTR-SFFTEIIASISDIKFA--RNGRHILSRDY-MTLKLWDINMDSGPVATF 378 (513)
Q Consensus 308 vwd~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~v~~i~~s--p~~~~l~~~~~-~~v~iwd~~~~~~~~~~~ 378 (513)
+|.+.+-... +........ ...+ .+.......+++++++ ...++||+++. ..|.||-...........
T Consensus 128 ~Yyt~~I~~~---i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~ 204 (717)
T PF08728_consen 128 AYYTETIIEA---IERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHV 204 (717)
T ss_pred EEEHHHHHHH---HHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccc
Confidence 9976431100 000000000 0000 1112233578999998 77888888876 888888766411111111
Q ss_pred ecccccccccccccccCCccceeeEEEeCCC---C---EEEEEeCCCcEEEEec
Q 010287 379 QVHEHLRPKLCDLYENDSIFDKFECCLSGDG---G---RVATGSYSNLFRVFGC 426 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~---~l~~~~~dg~i~vwd~ 426 (513)
..+.. ...|-+++|-++. . +|++++-.|.+.+|++
T Consensus 205 ~s~~~-------------~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 205 PSHQH-------------SHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccc-------------ccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 11110 0013378887643 2 7888899999999888
No 403
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.71 E-value=0.9 Score=47.13 Aligned_cols=153 Identities=12% Similarity=0.007 Sum_probs=91.8
Q ss_pred CCeEEEEeccCCCEEEEE---cCCeEEEEEcCCCcceeeecccCc----cccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287 233 YHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKP----ANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 305 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~---~d~~i~vwd~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 305 (513)
-.+..+...+|+...++. .+-.|..||+++-...... ..+| ...........++.|+|.-+...+.+..|+.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~-~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYE-TTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhh-hccccccccchhccccccccccccCCccchhhhhccccc
Confidence 345566667776665553 3557889998753321100 0011 0111122345688999987677888889999
Q ss_pred EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccc
Q 010287 306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL 384 (513)
Q Consensus 306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~ 384 (513)
|++..+...... +..+.. ....++++|+|.|+.++.|.. |++.-|... .+....+......
T Consensus 180 l~V~~~~~~~~~---v~s~p~-------------t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~--leik~~ip~Pp~~ 241 (1405)
T KOG3630|consen 180 LRVKSTKQLAQN---VTSFPV-------------TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS--LEIKSEIPEPPVE 241 (1405)
T ss_pred hhhhhhhhhhhh---hcccCc-------------ccceeeEEeccccceeeEecCCCeEEEeecc--cceeecccCCCcC
Confidence 998876432221 111111 146899999999999999987 988888765 3333333333221
Q ss_pred ccccccccccCCccceeeEEEeCCCCEEEEE
Q 010287 385 RPKLCDLYENDSIFDKFECCLSGDGGRVATG 415 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 415 (513)
. .+.|.+++|-....++++-
T Consensus 242 e-----------~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 242 E-----------NYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred C-----------CcceeEEEEecceeEEEEe
Confidence 1 2236688898877777643
No 404
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.61 E-value=3.8 Score=38.52 Aligned_cols=155 Identities=9% Similarity=-0.013 Sum_probs=75.4
Q ss_pred CCeEEEEEeCCCCeEEEEEe-----------CCC-cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287 282 EVITSAEFHPTHCNMLAYSS-----------SKG-SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 349 (513)
Q Consensus 282 ~~i~~~~~~~~~~~~l~~~~-----------~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 349 (513)
.....|+|.++| +++++-. ..+ .|.+++-.++.-.......+-. .......+++.
T Consensus 14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~------------~l~~p~Gi~~~ 80 (367)
T TIGR02604 14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE------------ELSMVTGLAVA 80 (367)
T ss_pred CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec------------CCCCccceeEe
Confidence 346789999998 7666543 223 6766664433211111122211 11345788999
Q ss_pred ecCCEEEEEeCCeEEEE-EccCCCCC---ee-eeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC------
Q 010287 350 RNGRHILSRDYMTLKLW-DINMDSGP---VA-TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS------ 418 (513)
Q Consensus 350 p~~~~l~~~~~~~v~iw-d~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------ 418 (513)
+++ ++++ +...|..| |....++. .. .+..-.... .+... ....++|.|||.+.++-+..
T Consensus 81 ~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~-----~~~~~---~~~~l~~gpDG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 81 VGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQI-----NNHHH---SLNSLAWGPDGWLYFNHGNTLASKVT 150 (367)
T ss_pred cCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCC-----Ccccc---cccCceECCCCCEEEecccCCCceec
Confidence 888 5544 33444434 54321111 11 111100000 00000 02378999999876644411
Q ss_pred -------------CcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCC
Q 010287 419 -------------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 461 (513)
Q Consensus 419 -------------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 461 (513)
|.|.-++...+. ....-.++.+ ...++|++++.++++-..+
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~rn-p~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQN-PYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCe-EEEEecCcCC-CccceECCCCCEEEEccCC
Confidence 345555555432 2122223333 3478999999888765433
No 405
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.53 E-value=1.5 Score=41.53 Aligned_cols=88 Identities=19% Similarity=0.252 Sum_probs=54.1
Q ss_pred ceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccC
Q 010287 399 DKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDAN 478 (513)
Q Consensus 399 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~ 478 (513)
.|..+..++.|..++-.+.+|.+..+=.+..++- ..++.....|.+-.+.-+.+++.+. -
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~-s~~eDgk~~v~CRt~~i~~~~ftss---~---------------- 164 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKN-SEFEDGKSTVNCRTTPVAERFFTSS---T---------------- 164 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCcc-ceecCCCceEEEEeecccceeeccC---C----------------
Confidence 5668889999999999998986655433322221 2333333445555555443333221 0
Q ss_pred CccccccCCeeEEEEeCCC----CEEEEEcCCcEEEEe
Q 010287 479 GNAFDFSMKLLHLAWHPSE----NSIACAASNSLYMYY 512 (513)
Q Consensus 479 ~~~~~~~~~i~~~~~sp~~----~~la~~~~~~~~i~~ 512 (513)
.-.+.+++|||+. .+++..+++.+++|+
T Consensus 165 ------~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~ 196 (741)
T KOG4460|consen 165 ------SLTLKQAAWHPSSILDPHLVLLTSDNVIRIYS 196 (741)
T ss_pred ------ceeeeeccccCCccCCceEEEEecCcEEEEEe
Confidence 2345788999986 456677889899886
No 406
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.38 E-value=7.2 Score=36.86 Aligned_cols=149 Identities=13% Similarity=0.145 Sum_probs=86.1
Q ss_pred cEEEEEEeecCCEEEEEeCCeEEE-EEccCCCCC-eeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC
Q 010287 342 SISDIKFARNGRHILSRDYMTLKL-WDINMDSGP-VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 419 (513)
Q Consensus 342 ~v~~i~~sp~~~~l~~~~~~~v~i-wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 419 (513)
....+..++++.+++.+..|.+.. ||- +.. -......... .++++.+.+++.+++++ .+|
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~---G~~~W~~~~~~~~~--------------~l~~v~~~~dg~l~l~g-~~G 301 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWEP---GQPYWQPHNRASAR--------------RIQNMGWRADGGLWLLT-RGG 301 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecCC---CCcceEEecCCCcc--------------ceeeeeEcCCCCEEEEe-CCc
Confidence 455566778999888888765433 332 222 1222211111 13478899999887765 456
Q ss_pred cEEEEecCCCCc----cceeecC--CCCceeEEEEcCCCCceeeecCCCeEEE-ecCCCCCccccCCccccccCCeeEEE
Q 010287 420 LFRVFGCSEGSA----ESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLA 492 (513)
Q Consensus 420 ~i~vwd~~~~~~----~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~-~~~~~~~~~~~~~~~~~~~~~i~~~~ 492 (513)
.+. +....+.. ....... ....+..+.+.+++..+++| .+|.+.. ..+.+.+..... .-......+.+.
T Consensus 302 ~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D~G~tW~~~~~--~~~~~~~ly~v~ 377 (398)
T PLN00033 302 GLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTDGGKSWKRDKG--ADNIAANLYSVK 377 (398)
T ss_pred eEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCCCCcceeEccc--cCCCCcceeEEE
Confidence 553 33333321 1122221 22357788899888877766 4666665 455555421111 112246788999
Q ss_pred EeCCCCEEEEEcCCcEEEEe
Q 010287 493 WHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 493 ~sp~~~~la~~~~~~~~i~~ 512 (513)
|.++++.+++|..+.+..|.
T Consensus 378 f~~~~~g~~~G~~G~il~~~ 397 (398)
T PLN00033 378 FFDDKKGFVLGNDGVLLRYL 397 (398)
T ss_pred EcCCCceEEEeCCcEEEEeC
Confidence 99998888888887776653
No 407
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=93.36 E-value=13 Score=39.82 Aligned_cols=70 Identities=16% Similarity=0.313 Sum_probs=37.1
Q ss_pred EEEEEeecCCEEEEEeC-CeE-EEEEccCCCCCeeeeecccccccccccccc-cCC------------ccceeeEEEeCC
Q 010287 344 SDIKFARNGRHILSRDY-MTL-KLWDINMDSGPVATFQVHEHLRPKLCDLYE-NDS------------IFDKFECCLSGD 408 (513)
Q Consensus 344 ~~i~~sp~~~~l~~~~~-~~v-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------~~~v~~~~~s~~ 408 (513)
.+|+++++|.+.++-+| ..| ++-.+.+++ .+..+.+....-. |..-. .+| +....+++.+||
T Consensus 596 r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg-~i~ilaGa~S~C~--C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPd 672 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDGRRINRVRKLSTDG-TISILAGAKSPCS--CDVAACCDCFSLRDVAATQAKLNSPYALAVSPD 672 (1899)
T ss_pred hceeecCCceEEEEeccchhhhheEEeccCc-eEEEecCCCCCCC--cccccCCccccccchhhhccccCCcceEEECCC
Confidence 78899999998888665 222 233333323 4444444332211 11111 111 123457899999
Q ss_pred CCEEEEEe
Q 010287 409 GGRVATGS 416 (513)
Q Consensus 409 ~~~l~~~~ 416 (513)
|...++-.
T Consensus 673 g~v~IAD~ 680 (1899)
T KOG4659|consen 673 GDVIIADS 680 (1899)
T ss_pred CcEEEecC
Confidence 98766543
No 408
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.27 E-value=0.44 Score=39.77 Aligned_cols=66 Identities=11% Similarity=0.164 Sum_probs=39.8
Q ss_pred CCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccc
Q 010287 244 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 316 (513)
Q Consensus 244 ~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 316 (513)
+..+++| .+|.|.+|..+........ .......|.++--.-+...+..+++.||.|+.|++.-++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~-------~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~ 136 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDR-------VCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV 136 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHh-------hhcccccceeccccccccceeEEeccCCceeeeccccCce
Confidence 4556667 8999999998743332221 1112233333322222225888999999999999876543
No 409
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.25 E-value=7.4 Score=36.57 Aligned_cols=233 Identities=13% Similarity=0.126 Sum_probs=95.9
Q ss_pred CCCEEEEE--cCCeEEEEEcCCCcceeeecc-cCcccccc--ccCCeEEEEEeCCCCeEEEEEeC------CCcEEEEEc
Q 010287 243 DGETFISA--DDLRINLWNLEISNQSFNIVD-VKPANMED--LTEVITSAEFHPTHCNMLAYSSS------KGSIRLIDM 311 (513)
Q Consensus 243 ~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~------dg~i~vwd~ 311 (513)
+.++|+.. ..++|++.|..+.-...++.. +.+..+.. .-.....+..-|+| .+++++-. -|-+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G-~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDG-RIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCc-cEEEEeccCCCCCCCCcEEEEcC
Confidence 45666664 699999999985433222211 11111111 11233455556787 67766532 245677776
Q ss_pred CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--------------------C-CeEEEEEccC
Q 010287 312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--------------------Y-MTLKLWDINM 370 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--------------------~-~~v~iwd~~~ 370 (513)
.+-+. ...++..... ...-..+-|.|....+++.. . .++.+||+..
T Consensus 165 ~tf~v----~g~We~~~~~---------~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~ 231 (461)
T PF05694_consen 165 ETFEV----KGRWEKDRGP---------QPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST 231 (461)
T ss_dssp TT--E----EEE--SB-TT---------------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT
T ss_pred ccccc----cceeccCCCC---------CCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC
Confidence 65443 2233322111 12335556666666666531 2 5799999996
Q ss_pred CCCCeeeeecccccccccccccccCCccceeeEEEe--CCCCEEEE-EeCCCcEEEEec-CCCCc---cceeec-----C
Q 010287 371 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS--GDGGRVAT-GSYSNLFRVFGC-SEGSA---ESTTLE-----A 438 (513)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~-~~~dg~i~vwd~-~~~~~---~~~~~~-----~ 438 (513)
.+.++++.......- ...+.|. |+..+=++ +.-..+|..|-. ..+.- ....+. +
T Consensus 232 -r~~~Q~idLg~~g~~-------------pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 232 -RKLLQTIDLGEEGQM-------------PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp -TEEEEEEES-TTEEE-------------EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred -CcEeeEEecCCCCCc-------------eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 888888865542211 1245554 44444332 224445555433 33311 111111 1
Q ss_pred C------------CCceeEEEEcCCCCceeee-cCCCeEEEecCCCCCccccCCccc----------------cccCCee
Q 010287 439 S------------KNPMRRQVQTPSRPSRPLG-SLSGVVRRVKGADNSALDANGNAF----------------DFSMKLL 489 (513)
Q Consensus 439 ~------------~~~v~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~~~~~~~~~----------------~~~~~i~ 489 (513)
- ..-++.+.+|.|.++|... -.+|.++.++-.++....+.++.. ...+...
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPq 377 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQ 377 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S---
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCC
Confidence 1 1236788999999998654 568999884444433322222111 1233457
Q ss_pred EEEEeCCCCEEEEE
Q 010287 490 HLAWHPSENSIACA 503 (513)
Q Consensus 490 ~~~~sp~~~~la~~ 503 (513)
-+..|-||++|-+.
T Consensus 378 MvqlS~DGkRlYvT 391 (461)
T PF05694_consen 378 MVQLSLDGKRLYVT 391 (461)
T ss_dssp -EEE-TTSSEEEEE
T ss_pred eEEEccCCeEEEEE
Confidence 78899999988754
No 410
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.22 E-value=5.5 Score=35.02 Aligned_cols=212 Identities=12% Similarity=0.097 Sum_probs=110.6
Q ss_pred cccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEE
Q 010287 277 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 356 (513)
Q Consensus 277 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~ 356 (513)
+.+....+.++.|+|+. +.|++......-.|+=...|+.. +.+..... .....|.+..+|++.+
T Consensus 81 i~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~Gdli----rtiPL~g~-----------~DpE~Ieyig~n~fvi 144 (316)
T COG3204 81 ILGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLI----RTIPLTGF-----------SDPETIEYIGGNQFVI 144 (316)
T ss_pred cccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceE----EEeccccc-----------CChhHeEEecCCEEEE
Confidence 44555669999999998 66666666666666655666653 33221110 2244577777777777
Q ss_pred EEeC-CeEEEEEccCCCCCeeeeecccccccccccccc-cCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccc-
Q 010287 357 SRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE-NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES- 433 (513)
Q Consensus 357 ~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~- 433 (513)
+-.. +.+.++.+..+...+ ......- .+..... |.. .-.++|+|..+.|+.+-+-.-+.||.........
T Consensus 145 ~dER~~~l~~~~vd~~t~~~-~~~~~~i---~L~~~~k~N~G---fEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~ 217 (316)
T COG3204 145 VDERDRALYLFTVDADTTVI-SAKVQKI---PLGTTNKKNKG---FEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLS 217 (316)
T ss_pred EehhcceEEEEEEcCCccEE-eccceEE---eccccCCCCcC---ceeeecCCCCceEEEEEccCCcEEEEEecCCcccc
Confidence 7554 888888887522222 1111000 0000000 111 2279999999999988887778887766432111
Q ss_pred -eeecCC-------CCceeEEEEcCCCC-ceeeecCCCeEEE--ecCCCCCccccCCccccccC---CeeEEEEeCCCCE
Q 010287 434 -TTLEAS-------KNPMRRQVQTPSRP-SRPLGSLSGVVRR--VKGADNSALDANGNAFDFSM---KLLHLAWHPSENS 499 (513)
Q Consensus 434 -~~~~~~-------~~~v~~~~~~~~~~-~l~~~~~d~~i~~--~~~~~~~~~~~~~~~~~~~~---~i~~~~~sp~~~~ 499 (513)
.....+ -..+..+.+.+... +|+.+.+++.+.- ..+.......+.....+.+. ....++..++|.+
T Consensus 218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l 297 (316)
T COG3204 218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL 297 (316)
T ss_pred cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCE
Confidence 111111 12344556665433 4444444444332 11111110011111112222 3456788888887
Q ss_pred EEEEcCCcEEEE
Q 010287 500 IACAASNSLYMY 511 (513)
Q Consensus 500 la~~~~~~~~i~ 511 (513)
-+++=-|.++.|
T Consensus 298 YIvSEPnlfy~F 309 (316)
T COG3204 298 YIVSEPNLFYRF 309 (316)
T ss_pred EEEecCCcceec
Confidence 666666666555
No 411
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.15 E-value=3.3 Score=40.03 Aligned_cols=156 Identities=11% Similarity=0.057 Sum_probs=85.1
Q ss_pred CCeEEEEeccCCCEEEEE---cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCC---eEEEEEeCCCcE
Q 010287 233 YHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC---NMLAYSSSKGSI 306 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~dg~i 306 (513)
.++..++|....+.+.+. .+|.+++=|-. .-+.-..|..+.|.|-+. -.+++......|
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds~---------------viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhV 84 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDSK---------------VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHV 84 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCcc---------------EeeccceeeeeeecCcccCCCCceEEEeccceE
Confidence 458889998554555554 25655544432 123345689999988521 245556778899
Q ss_pred EEEEcCCcccccccc---eeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccc
Q 010287 307 RLIDMRQSALCDTHS---KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHE 382 (513)
Q Consensus 307 ~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~ 382 (513)
.||.+.......... .+.+..+. .. ---..+.|+|....|+.-.. ..-.+++++.+...++.--...
T Consensus 85 tVWqL~~s~~e~~K~l~sQtcEi~e~---~p------vLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~ 155 (671)
T PF15390_consen 85 TVWQLCPSTTERNKLLMSQTCEIREP---FP------VLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTS 155 (671)
T ss_pred EEEEeccCccccccceeeeeeeccCC---cc------cCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCC
Confidence 999986322111100 11111110 00 11245779999888887443 2334555554333332211112
Q ss_pred ccccccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecC
Q 010287 383 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCS 427 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~ 427 (513)
+. |.+.+|.+||+.|+.+- ..=.-++||-.
T Consensus 156 G~---------------IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 156 GL---------------IHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ce---------------EEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 21 44899999999877553 33356788754
No 412
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.04 E-value=10 Score=37.62 Aligned_cols=28 Identities=14% Similarity=-0.004 Sum_probs=22.3
Q ss_pred ceEEEeecCCeEEEEEccCceeeeeecc
Q 010287 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (513)
Q Consensus 127 ~~l~s~s~d~~i~vw~~~~~~~~~~~~~ 154 (513)
..++.++.|+.+.-.|.++|+.......
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 3677788899999999999988766544
No 413
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.89 E-value=1.6 Score=36.44 Aligned_cols=102 Identities=12% Similarity=0.094 Sum_probs=66.6
Q ss_pred CEEEEEeCCCcEEEEecCCCCcc-ceeecCCCCceeEEEEcCCCCceeeecCC---C---eEEEecCCCCCcc-------
Q 010287 410 GRVATGSYSNLFRVFGCSEGSAE-STTLEASKNPMRRQVQTPSRPSRPLGSLS---G---VVRRVKGADNSAL------- 475 (513)
Q Consensus 410 ~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~---~i~~~~~~~~~~~------- 475 (513)
+.|..+...+.|.+|++...... ...+. .-+.|..+.++..|.+|++--.+ . .+|++..|+....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 45555466788999999843333 23333 34788899999999999986433 2 4555333333210
Q ss_pred ccCC------------c-----cccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287 476 DANG------------N-----AFDFSMKLLHLAWHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 476 ~~~~------------~-----~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 512 (513)
.+.+ . -+..+.++.+++-.|-..-|++|+.+.+.+|.
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~ 161 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFT 161 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEE
Confidence 0111 0 11235678999999998889999999999985
No 414
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.32 E-value=3.3 Score=43.26 Aligned_cols=151 Identities=9% Similarity=0.077 Sum_probs=86.8
Q ss_pred cEEEEEEeecCCEEEEEe---CCeEEEEEccCCCCCe----eeeecccccccccccccccCCccceeeEEEeCCCC-EEE
Q 010287 342 SISDIKFARNGRHILSRD---YMTLKLWDINMDSGPV----ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVA 413 (513)
Q Consensus 342 ~v~~i~~sp~~~~l~~~~---~~~v~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~ 413 (513)
++..+...+|+...++.. +-.|..||++.-.... ..+..+.. .++ +..+ ..++.|.|.-. ..+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~t------s~e--k~vf-~~~~~wnP~vp~n~a 172 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSAT------SFE--KPVF-QLKNVWNPLVPLNSA 172 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccc------hhc--cccc-cccccccCCccchhh
Confidence 456666677877666532 2578999987511111 11111111 011 0111 22677887643 345
Q ss_pred EEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEE
Q 010287 414 TGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW 493 (513)
Q Consensus 414 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 493 (513)
....|+.|++..+....+....+ .......+++|+|.|+.++.|..+|.+.-+...-....++......-..+|.++.|
T Consensus 173 v~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 173 VDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred hhccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEE
Confidence 66788999988776442222221 23456789999999999999999998866222211111122221112578999999
Q ss_pred eCCCCEEEE
Q 010287 494 HPSENSIAC 502 (513)
Q Consensus 494 sp~~~~la~ 502 (513)
-....+|++
T Consensus 252 l~t~eflvv 260 (1405)
T KOG3630|consen 252 LSTQEFLVV 260 (1405)
T ss_pred ecceeEEEE
Confidence 998888874
No 415
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.20 E-value=1.1 Score=38.41 Aligned_cols=79 Identities=9% Similarity=0.066 Sum_probs=52.0
Q ss_pred EeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEc
Q 010287 289 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDI 368 (513)
Q Consensus 289 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~ 368 (513)
+..++ .++++.+.+|.+++||+.+++.....+.....-...... -......|..+.++.+|.-+++-++|..+.|+.
T Consensus 18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~--~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVS--DKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSP 94 (219)
T ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccc--cCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence 33455 678999999999999999987654332111110000000 002346789999999999888877788899987
Q ss_pred cC
Q 010287 369 NM 370 (513)
Q Consensus 369 ~~ 370 (513)
..
T Consensus 95 ~L 96 (219)
T PF07569_consen 95 DL 96 (219)
T ss_pred cc
Confidence 74
No 416
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=91.68 E-value=0.59 Score=39.04 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=36.9
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEE-EEcCCCCceeeecCCCeEEE
Q 010287 408 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQ-VQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 408 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~d~~i~~ 466 (513)
-+.-+++|+.+|.|++|+.............-..++-.+ ....++.+..++..|+.||.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~ 128 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRA 128 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceee
Confidence 345688999999999998774333222222222333332 23344557788899999998
No 417
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.48 E-value=5.1 Score=30.64 Aligned_cols=80 Identities=16% Similarity=0.279 Sum_probs=50.6
Q ss_pred EEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeE
Q 010287 39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (513)
Q Consensus 39 ~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i 118 (513)
+.-.|.....-|+.++..|+|.|++....... ..+ ....++.|.+...|++|
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~--------------------------~~~--~~~~i~~LNin~~ital 53 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQR--------------------------TGR--QDSDISFLNINQEITAL 53 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccc--------------------------ccc--ccCceeEEECCCceEEE
Confidence 44567777778999999999999996543321 000 11225555566778888
Q ss_pred EEee---cCCCceEEEeecCCeEEEEEccCce
Q 010287 119 RWCQ---SANSALYLLSTNDKTIKLWKVQEKK 147 (513)
Q Consensus 119 ~~~~---~~~~~~l~s~s~d~~i~vw~~~~~~ 147 (513)
+--+ ......|+.|+ ...+..||+....
T Consensus 54 aaG~l~~~~~~D~LliGt-~t~llaYDV~~N~ 84 (136)
T PF14781_consen 54 AAGRLKPDDGRDCLLIGT-QTSLLAYDVENNS 84 (136)
T ss_pred EEEecCCCCCcCEEEEec-cceEEEEEcccCc
Confidence 6544 33344566655 4568999998764
No 418
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.06 E-value=11 Score=33.84 Aligned_cols=191 Identities=10% Similarity=0.063 Sum_probs=90.4
Q ss_pred eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCC-----eEEEEEeCCCcEEEEEcCCcccccccceeecccc
Q 010287 254 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-----NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 328 (513)
Q Consensus 254 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 328 (513)
.|.+||+.+.+ ..+.+.+.+.... ..+.+..+.+....+ ..+++=+..+-|.|+|+.+++. -+......
T Consensus 35 KLv~~Dl~t~~-li~~~~~p~~~~~-~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s----~Rv~~~~~ 108 (287)
T PF03022_consen 35 KLVAFDLKTNQ-LIRRYPFPPDIAP-PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKS----WRVLHNSF 108 (287)
T ss_dssp EEEEEETTTTC-EEEEEE--CCCS--TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEE----EEEETCGC
T ss_pred EEEEEECCCCc-EEEEEECChHHcc-cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcE----EEEecCCc
Confidence 57778888765 3333333322222 356688888877321 2344444457899999998764 22222211
Q ss_pred CCCC--ccc-----cccccccEEEEEEee---cCCEEEEEeCCeEEEEEccCC----CCCeeeeeccccccccccccccc
Q 010287 329 APGT--RSF-----FTEIIASISDIKFAR---NGRHILSRDYMTLKLWDINMD----SGPVATFQVHEHLRPKLCDLYEN 394 (513)
Q Consensus 329 ~~~~--~~~-----~~~~~~~v~~i~~sp---~~~~l~~~~~~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 394 (513)
.+.+ ..+ .-.....+..++.+| +++.|.-..-..-++|.+.+. ....... .....+..+...
T Consensus 109 ~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~----~~~~~v~~lG~k 184 (287)
T PF03022_consen 109 SPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQ----ALASQVQDLGDK 184 (287)
T ss_dssp TTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-----HHHT-EEEEE-
T ss_pred ceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccc----cccccceecccc
Confidence 1111 000 001223477778776 667777655433345554420 0000000 000000000000
Q ss_pred CCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc--ceeec--CC-CCceeEEEEcC--CCCcee
Q 010287 395 DSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE--STTLE--AS-KNPMRRQVQTP--SRPSRP 456 (513)
Q Consensus 395 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~--~~-~~~v~~~~~~~--~~~~l~ 456 (513)
. ...-.++++++|.+.++--..+.|..|+....-.. ...+. .. -.....+.+.+ ++.+.+
T Consensus 185 ~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v 251 (287)
T PF03022_consen 185 G--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWV 251 (287)
T ss_dssp ----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEE
T ss_pred C--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEE
Confidence 0 00126889999988888889999999998862111 11111 11 23456777776 544433
No 419
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.92 E-value=10 Score=35.62 Aligned_cols=127 Identities=10% Similarity=0.090 Sum_probs=74.2
Q ss_pred EEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCcccc-ccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCc
Q 010287 236 NSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANM-EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 314 (513)
Q Consensus 236 ~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 314 (513)
+.+-|....+.+++...|.+.-|.....+....+ .+ -...++|.++.|++|. +.+|.--.+..|.+++....
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpi------Sfdm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d 98 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPI------SFDMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPD 98 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCc------eeeecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCC
Confidence 4555665566666555566666766533321110 11 1235689999999998 99999999999999987332
Q ss_pred ccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeeccc
Q 010287 315 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHE 382 (513)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~ 382 (513)
+.........+. ....|....|+.+ .-++.-.+..+.+|.+......++..+.+.
T Consensus 99 ~~~l~~~~~ck~------------k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~ 153 (657)
T KOG2377|consen 99 NSQLEYTQECKT------------KNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHN 153 (657)
T ss_pred chhhHHHHHhcc------------CcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcc
Confidence 221111111111 1145888999865 555555554577777765344444444444
No 420
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=90.64 E-value=3.3 Score=38.55 Aligned_cols=168 Identities=13% Similarity=0.073 Sum_probs=87.4
Q ss_pred cccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceee-ecccCccccccccCCeE-EEEEeCCCCeEEEEEeCCCcEE
Q 010287 230 AHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFN-IVDVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSIR 307 (513)
Q Consensus 230 ~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~dg~i~ 307 (513)
.....|..+-..|||+.+..-...++.++++.+.....+ +.+..|. .....|+ .+..-..+ .-+..+..||.|.
T Consensus 218 ~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg---~~~~~Vte~l~lL~Gg-~SLLv~~~dG~vs 293 (733)
T COG4590 218 VPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPG---DSRHQVTEQLYLLSGG-FSLLVVHEDGLVS 293 (733)
T ss_pred CCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCC---chHHHHHHHHHHHhCc-eeEEEEcCCCcee
Confidence 344567788889999999887668888998874322211 1111110 0001111 11112233 6677888899887
Q ss_pred EE-EcCCcc-cccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccc
Q 010287 308 LI-DMRQSA-LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL 384 (513)
Q Consensus 308 vw-d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~ 384 (513)
-| |.+.+. ..-.+++.++-.. .++..+.-..+.+-+++-+. |++.++.... .+++-.-+..+.
T Consensus 294 QWFdvr~~~~p~l~h~R~f~l~p------------a~~~~l~pe~~rkgF~~l~~~G~L~~f~st~-~~~lL~~~~~~~- 359 (733)
T COG4590 294 QWFDVRRDGQPHLNHIRNFKLAP------------AEVQFLLPETNRKGFYSLYRNGTLQSFYSTS-EKLLLFERAYQA- 359 (733)
T ss_pred eeeeeecCCCCcceeeeccccCc------------ccceeeccccccceEEEEcCCCceeeeeccc-CcceehhhhhcC-
Confidence 76 554432 1111222222111 22332222223344444444 7777766553 332221111111
Q ss_pred ccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc
Q 010287 385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 431 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 431 (513)
..-+++||.+.+|++-. .|.++++.+++...
T Consensus 360 ---------------~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 360 ---------------PQLVAMSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred ---------------cceeeeCcccchheeec-CCceEEEEecCCCC
Confidence 11578999999988654 57899999987633
No 421
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.56 E-value=15 Score=34.65 Aligned_cols=112 Identities=9% Similarity=0.113 Sum_probs=54.9
Q ss_pred CeEEEEeccCCCEEEEEc------------CC-eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEE
Q 010287 234 HINSISNNSDGETFISAD------------DL-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS 300 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~~------------d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 300 (513)
....|+|.++|+++++.. .+ .|.+++-..+....... ..+.......+.+++.+++ +++ +
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~----~vfa~~l~~p~Gi~~~~~G--lyV-~ 87 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKS----NVFAEELSMVTGLAVAVGG--VYV-A 87 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCccee----EEeecCCCCccceeEecCC--EEE-e
Confidence 467899999999888741 12 67777654332211100 0112223346788998886 444 3
Q ss_pred eCCCcEEEEEcCCccccc-ccceeeccccCCCCccccccccccEEEEEEeecCCEEEE
Q 010287 301 SSKGSIRLIDMRQSALCD-THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 357 (513)
Q Consensus 301 ~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~ 357 (513)
+.....++.|........ +....++..... -..+......+.|.|||.+.++
T Consensus 88 ~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~-----~~~~~~~~~~l~~gpDG~LYv~ 140 (367)
T TIGR02604 88 TPPDILFLRDKDGDDKADGEREVLLSGFGGQ-----INNHHHSLNSLAWGPDGWLYFN 140 (367)
T ss_pred CCCeEEEEeCCCCCCCCCCccEEEEEccCCC-----CCcccccccCceECCCCCEEEe
Confidence 444333343443211111 111111111100 0001234778999999987775
No 422
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.45 E-value=14 Score=33.99 Aligned_cols=119 Identities=13% Similarity=0.166 Sum_probs=61.6
Q ss_pred CCeEEEEecc-CCCEEEEEcCCe------EEEEEcCCCc---ceeeecccCc------cccccccCCeEEEEEeCCCCeE
Q 010287 233 YHINSISNNS-DGETFISADDLR------INLWNLEISN---QSFNIVDVKP------ANMEDLTEVITSAEFHPTHCNM 296 (513)
Q Consensus 233 ~~v~~~~~~~-~~~~l~s~~d~~------i~vwd~~~~~---~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~~ 296 (513)
+.+..+.+.+ ++.+++.++++. +...++.... ....+....+ ..+........+|++.+++ .+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-SF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-CE
Confidence 5578899985 566666667666 6555555311 1111111000 0111111234578887776 77
Q ss_pred EEEEeCC------CcEEEEEcCCcccccccceeeccccCCCCcc---ccccccccEEEEEEeecCCEEEE
Q 010287 297 LAYSSSK------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRS---FFTEIIASISDIKFARNGRHILS 357 (513)
Q Consensus 297 l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~i~~sp~~~~l~~ 357 (513)
+++.-.+ ..|..++.. +... ..+..+....... .-......+.+++++|+|+.|++
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~----~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVI----RRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-Cccc----ceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 7766556 678888865 5542 2221111100000 01123357899999999996554
No 423
>PRK13684 Ycf48-like protein; Provisional
Probab=90.18 E-value=15 Score=33.92 Aligned_cols=106 Identities=17% Similarity=0.092 Sum_probs=60.1
Q ss_pred eeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc-cceeecCCCCceeEEEEcCCCCceeeecCCCeEEE--ecCCCCCccc
Q 010287 400 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSA-ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VKGADNSALD 476 (513)
Q Consensus 400 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~--~~~~~~~~~~ 476 (513)
+..+.+.|++.+++++. .|.+..- ...+.. -..........+..+.+.++++.++.+ ..|.+++ .++...+...
T Consensus 175 ~~~i~~~~~g~~v~~g~-~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~ 251 (334)
T PRK13684 175 VRNLRRSPDGKYVAVSS-RGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKP 251 (334)
T ss_pred EEEEEECCCCeEEEEeC-CceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccc
Confidence 34788899987776655 4544321 112211 111222345677888999998877765 4677766 2333333211
Q ss_pred cCCccccccCCeeEEEEeCCCCEEEEEcCCcEE
Q 010287 477 ANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 509 (513)
Q Consensus 477 ~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~ 509 (513)
... ...-+..+.++++.|++..++++..+.++
T Consensus 252 ~~~-~~~~~~~l~~v~~~~~~~~~~~G~~G~v~ 283 (334)
T PRK13684 252 IIP-EITNGYGYLDLAYRTPGEIWAGGGNGTLL 283 (334)
T ss_pred cCC-ccccccceeeEEEcCCCCEEEEcCCCeEE
Confidence 100 01113457889999998877777665443
No 424
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.18 E-value=15 Score=33.89 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=37.0
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCccc--e-eecCCCCceeEEEEcCCCCceeeecCCCeEE
Q 010287 408 DGGRVATGSYSNLFRVFGCSEGSAES--T-TLEASKNPMRRQVQTPSRPSRPLGSLSGVVR 465 (513)
Q Consensus 408 ~~~~l~~~~~dg~i~vwd~~~~~~~~--~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 465 (513)
.|.++++.-..+.|....+....... . .+......+..+++.|||.++++-+.+|.|.
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 34466665566788887876543322 1 2233444788999999999988877777764
No 425
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.89 E-value=24 Score=35.63 Aligned_cols=68 Identities=19% Similarity=0.201 Sum_probs=42.0
Q ss_pred CeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 010287 234 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 309 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vw 309 (513)
.+..+.|+.+..+|+...+|++++|++-.......-+ -.+.....|..+.+..+| ++.-..+|.+.+-
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~sv-----g~e~~~~~I~ec~~f~~G---Vavlt~~g~v~~i 152 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSV-----GFESQMSDIVECRFFHNG---VAVLTVSGQVILI 152 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecchhhhccccc-----ccccccCceeEEEEecCc---eEEEecCCcEEEE
Confidence 5788999999888888899999999987322211000 112234456666666666 3444455655543
No 426
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=89.55 E-value=4.3 Score=38.32 Aligned_cols=37 Identities=24% Similarity=0.173 Sum_probs=31.8
Q ss_pred cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCC
Q 010287 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRD 69 (513)
Q Consensus 33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~ 69 (513)
.....+.+++.+|++.+.|+.+.-|+|.++|+..+..
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v 341 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV 341 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh
Confidence 3456799999999999999998889999999877654
No 427
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.43 E-value=2.1 Score=39.73 Aligned_cols=156 Identities=9% Similarity=0.014 Sum_probs=87.9
Q ss_pred ccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCcccee-eEEEeCCCCEEEEEeCCC
Q 010287 341 ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF-ECCLSGDGGRVATGSYSN 419 (513)
Q Consensus 341 ~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg 419 (513)
..+..+-..|||+.+..-+..++.++++.+..-..+++...... +....|+ ++..-..|.-|..++.||
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg----------~~~~~Vte~l~lL~Gg~SLLv~~~dG 290 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPG----------DSRHQVTEQLYLLSGGFSLLVVHEDG 290 (733)
T ss_pred cchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCC----------chHHHHHHHHHHHhCceeEEEEcCCC
Confidence 56778889999999998777889999987521111211111000 0000011 112223455677888899
Q ss_pred cEEEE-ecCCCCcc-c---eeecCCCCceeEEEEcCCCCceeeecCCCeEEEe--cCCCCCccccCCccccccCCeeEEE
Q 010287 420 LFRVF-GCSEGSAE-S---TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV--KGADNSALDANGNAFDFSMKLLHLA 492 (513)
Q Consensus 420 ~i~vw-d~~~~~~~-~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~--~~~~~~~~~~~~~~~~~~~~i~~~~ 492 (513)
.|.-| |...+... . ..++-...++..+.-....+.+++-..+|.+... ...++. .. ...-+.+..++
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l----L~--~~~~~~~~~~~ 364 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL----LF--ERAYQAPQLVA 364 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce----eh--hhhhcCcceee
Confidence 99887 54433221 1 1122222344444444555666777777777661 111111 00 01134678899
Q ss_pred EeCCCCEEEEEcCCcEEEEe
Q 010287 493 WHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 493 ~sp~~~~la~~~~~~~~i~~ 512 (513)
+||.+.+|++-..+++.+|.
T Consensus 365 ~Sp~~~~Ll~e~~gki~~~~ 384 (733)
T COG4590 365 MSPNQAYLLSEDQGKIRLAQ 384 (733)
T ss_pred eCcccchheeecCCceEEEE
Confidence 99999999988888887764
No 428
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.31 E-value=2.6 Score=36.07 Aligned_cols=71 Identities=15% Similarity=0.218 Sum_probs=47.6
Q ss_pred eccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccc-------cccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287 240 NNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME-------DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 311 (513)
Q Consensus 240 ~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~ 311 (513)
+..+++++++- .+|.+++||+.+.+..+.-..+.|. +. .....|..+.++.+| .-+++- .+|....|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pl-l~~~~~~~~~~~~~i~~~~lt~~G-~PiV~l-sng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPL-LNSSPVSDKSSSPNITSCSLTSNG-VPIVTL-SNGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHH-hcccccccCCCCCcEEEEEEcCCC-CEEEEE-eCCCEEEecc
Confidence 34467777765 8999999999987655443222221 11 355678899999887 556554 4578888886
Q ss_pred CC
Q 010287 312 RQ 313 (513)
Q Consensus 312 ~~ 313 (513)
.-
T Consensus 95 ~L 96 (219)
T PF07569_consen 95 DL 96 (219)
T ss_pred cc
Confidence 54
No 429
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.23 E-value=14 Score=32.26 Aligned_cols=113 Identities=15% Similarity=0.084 Sum_probs=67.2
Q ss_pred CeEEEEEeCCCCeEEEEEeCCC--cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC
Q 010287 283 VITSAEFHPTHCNMLAYSSSKG--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 360 (513)
Q Consensus 283 ~i~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~ 360 (513)
....+.|..++ .++-+.+.-| .|+.+|+.+++... ....+.. -.-..++...|.-+.++-.+
T Consensus 46 FTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~----~~~l~~~-----------~FgEGit~~~d~l~qLTWk~ 109 (264)
T PF05096_consen 46 FTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQ----SVPLPPR-----------YFGEGITILGDKLYQLTWKE 109 (264)
T ss_dssp EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEE----EEE-TTT-------------EEEEEEETTEEEEEESSS
T ss_pred cCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEE----EEECCcc-----------ccceeEEEECCEEEEEEecC
Confidence 34578887777 8888888877 78899999987532 1111110 11233444433333334445
Q ss_pred CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287 361 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 430 (513)
Q Consensus 361 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 430 (513)
+...+||..+ -+.+.++...... +.++ .|++.|+.......|+++|..+.+
T Consensus 110 ~~~f~yd~~t-l~~~~~~~y~~EG----------------WGLt--~dg~~Li~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 110 GTGFVYDPNT-LKKIGTFPYPGEG----------------WGLT--SDGKRLIMSDGSSRLYFLDPETFK 160 (264)
T ss_dssp SEEEEEETTT-TEEEEEEE-SSS------------------EEE--ECSSCEEEE-SSSEEEEE-TTT-S
T ss_pred CeEEEEcccc-ceEEEEEecCCcc----------------eEEE--cCCCEEEEECCccceEEECCcccc
Confidence 8999999986 6677766554321 2566 466667766667789999988763
No 430
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.10 E-value=20 Score=33.75 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=33.2
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCC
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTR 68 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~ 68 (513)
.+....++|.++.||+|.+.||+--.+.+|.+++....+
T Consensus 61 fdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 61 FDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred eeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCc
Confidence 445567899999999999999999999999999975443
No 431
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.07 E-value=10 Score=31.60 Aligned_cols=31 Identities=3% Similarity=-0.127 Sum_probs=21.6
Q ss_pred CCceEEEeec--CCeEEEEEccCceeeeeeccc
Q 010287 125 NSALYLLSTN--DKTIKLWKVQEKKVKKVFDWN 155 (513)
Q Consensus 125 ~~~~l~s~s~--d~~i~vw~~~~~~~~~~~~~~ 155 (513)
++.++.+.+. ...|++||+.+++......+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~ 87 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA 87 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC
Confidence 4556666654 446999999999876655544
No 432
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.66 E-value=20 Score=33.08 Aligned_cols=167 Identities=12% Similarity=0.140 Sum_probs=84.3
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCc------EEEEEcCCcccc-----cccceeeccccCCCCccccccccccEEEEEEee
Q 010287 282 EVITSAEFHPTHCNMLAYSSSKGS------IRLIDMRQSALC-----DTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 350 (513)
Q Consensus 282 ~~i~~~~~~~~~~~~l~~~~~dg~------i~vwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp 350 (513)
+.+..+.+.|++ ..+++.+.+|. +..+++...... ......+...... .+..-....-+|++.+
T Consensus 20 GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~----~~~~~~~D~Egi~~~~ 94 (326)
T PF13449_consen 20 GGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQ----PFPKNGLDPEGIAVPP 94 (326)
T ss_pred CcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCC----cCCcCCCChhHeEEec
Confidence 457888898765 55666677777 555555431100 0001111111100 0111112455778877
Q ss_pred cCCEEEEEe-C------CeEEEEEccCCCCCeeeeeccccccccc---ccccccCCccceeeEEEeCCCCEEEEEeC---
Q 010287 351 NGRHILSRD-Y------MTLKLWDINMDSGPVATFQVHEHLRPKL---CDLYENDSIFDKFECCLSGDGGRVATGSY--- 417 (513)
Q Consensus 351 ~~~~l~~~~-~------~~v~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--- 417 (513)
++.++++.. + ..|..++.. ++....+..+....... .....|.. .-+++++|||+.|+++.+
T Consensus 95 ~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G---~E~la~~~dG~~l~~~~E~~l 169 (326)
T PF13449_consen 95 DGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRG---FEGLAVSPDGRTLFAAMESPL 169 (326)
T ss_pred CCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCC---eEEEEECCCCCEEEEEECccc
Confidence 888777743 2 456666644 66666654333221111 12222333 338999999996665433
Q ss_pred --CC--c-------EEEE--ecCCCCcc----ceeecC-----CCCceeEEEEcCCCCceeee
Q 010287 418 --SN--L-------FRVF--GCSEGSAE----STTLEA-----SKNPMRRQVQTPSRPSRPLG 458 (513)
Q Consensus 418 --dg--~-------i~vw--d~~~~~~~----~~~~~~-----~~~~v~~~~~~~~~~~l~~~ 458 (513)
|+ . ++++ |..+.... ...+.. ....+..+.+-+++++|+.-
T Consensus 170 ~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 170 KQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred cCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 22 1 4454 54442111 122222 34567788999999877654
No 433
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.58 E-value=10 Score=36.15 Aligned_cols=139 Identities=12% Similarity=0.037 Sum_probs=83.0
Q ss_pred eecCCEEEE-EeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC--------CEEEEEeCC
Q 010287 349 ARNGRHILS-RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG--------GRVATGSYS 418 (513)
Q Consensus 349 sp~~~~l~~-~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--------~~l~~~~~d 418 (513)
..+..+|+. |.. ..++-.|+.. ++.+..+..+... -+.|.|+. +.|+ |-.+
T Consensus 476 ~~dssli~~dg~~~~kLykmDIEr-GkvveeW~~~ddv-----------------vVqy~p~~kf~qmt~eqtlv-GlS~ 536 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIER-GKVVEEWDLKDDV-----------------VVQYNPYFKFQQMTDEQTLV-GLSD 536 (776)
T ss_pred cCCcceEEecCCCcccceeeeccc-ceeeeEeecCCcc-----------------eeecCCchhHHhcCccceEE-eecc
Confidence 345566665 444 7788888886 8888888877754 35566653 2344 4445
Q ss_pred CcEEEEecCCCCccceeecCCCCcee----EEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEe
Q 010287 419 NLFRVFGCSEGSAESTTLEASKNPMR----RQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWH 494 (513)
Q Consensus 419 g~i~vwd~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 494 (513)
..|.-.|++-.+..+... ....-+. +........++|.+|..|.|+++..-... -....-.....|..+..+
T Consensus 537 ~svFrIDPR~~gNKi~v~-esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r---AKtalP~lG~aIk~idvt 612 (776)
T COG5167 537 YSVFRIDPRARGNKIKVV-ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR---AKTALPGLGDAIKHIDVT 612 (776)
T ss_pred cceEEecccccCCceeee-eehhccccccccccccccCceEEEecCCCceeeehhhcch---hhhcCcccccceeeeEee
Confidence 555555665443222111 1111111 22334566799999999999992211111 111122367899999999
Q ss_pred CCCCEEEEEcCCcEEE
Q 010287 495 PSENSIACAASNSLYM 510 (513)
Q Consensus 495 p~~~~la~~~~~~~~i 510 (513)
.+|++|.+...+.+.+
T Consensus 613 a~Gk~ilaTCk~yllL 628 (776)
T COG5167 613 ANGKHILATCKNYLLL 628 (776)
T ss_pred cCCcEEEEeecceEEE
Confidence 9999988777776654
No 434
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=88.30 E-value=17 Score=31.86 Aligned_cols=186 Identities=12% Similarity=0.071 Sum_probs=101.2
Q ss_pred cCCeEEEEeccCCCEEEEE---cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEE
Q 010287 232 DYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 308 (513)
Q Consensus 232 ~~~v~~~~~~~~~~~l~s~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v 308 (513)
..-...+.|..++.++-+. ....|+.+|+.+++...+. .+.. .-.-..++...+ .++...-.++...+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~------~l~~-~~FgEGit~~~d--~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV------PLPP-RYFGEGITILGD--KLYQLTWKEGTGFV 114 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE------E-TT-T--EEEEEEETT--EEEEEESSSSEEEE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE------ECCc-cccceeEEEECC--EEEEEEecCCeEEE
Confidence 3445678887777777765 3668999999987644322 1221 112234555544 56777778999999
Q ss_pred EEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccc
Q 010287 309 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPK 387 (513)
Q Consensus 309 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~ 387 (513)
||..+-+.. ..+.-. +.=+.++ .|++.|+..+. ..++++|..+ .+....+.......
T Consensus 115 yd~~tl~~~----~~~~y~-------------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~-f~~~~~i~V~~~g~-- 172 (264)
T PF05096_consen 115 YDPNTLKKI----GTFPYP-------------GEGWGLT--SDGKRLIMSDGSSRLYFLDPET-FKEVRTIQVTDNGR-- 172 (264)
T ss_dssp EETTTTEEE----EEEE-S-------------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTE--
T ss_pred EccccceEE----EEEecC-------------CcceEEE--cCCCEEEEECCccceEEECCcc-cceEEEEEEEECCE--
Confidence 999876542 222211 1234455 56777776654 8999999875 66666665443221
Q ss_pred cccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeec-----------C----CCCceeEEEEcCCC
Q 010287 388 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE-----------A----SKNPMRRQVQTPSR 452 (513)
Q Consensus 388 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----------~----~~~~v~~~~~~~~~ 452 (513)
.+..+..+.+- +|...|-.-....|...|+.+|... ..+. . ...-.+.+++.|..
T Consensus 173 --------pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~-~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~ 242 (264)
T PF05096_consen 173 --------PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVV-GWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPET 242 (264)
T ss_dssp --------E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEE-EEEE-HHHHHHHTSTTST--TTS-EEEEEEETTT
T ss_pred --------ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEE-EEEEhhHhhhcccccccccccCCeeEeEeEeCCC
Confidence 11112355665 5655554445566777777777322 1111 0 12346789997765
Q ss_pred C-ceeee
Q 010287 453 P-SRPLG 458 (513)
Q Consensus 453 ~-~l~~~ 458 (513)
+ ++++|
T Consensus 243 ~~l~vTG 249 (264)
T PF05096_consen 243 DRLFVTG 249 (264)
T ss_dssp TEEEEEE
T ss_pred CEEEEEe
Confidence 4 34444
No 435
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=88.09 E-value=22 Score=32.89 Aligned_cols=26 Identities=23% Similarity=0.440 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCEEEeecCCCcEEEEE
Q 010287 37 IISAIEFDKSGDHLATGDRGGRVVLFE 63 (513)
Q Consensus 37 ~V~~v~~sp~g~~latg~~dg~i~iw~ 63 (513)
.-++|+|.|||+++++ ...|.|++++
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~ 28 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD 28 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe
Confidence 3578999999987665 5699999999
No 436
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=87.35 E-value=27 Score=33.23 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=36.7
Q ss_pred CEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287 245 ETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 312 (513)
Q Consensus 245 ~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 312 (513)
+-++.- -||.+.+++-+.- .+.. .+.. .--...+.|.+.. ..|++++.+..+.-|...
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~--~f~~------~lp~-~llPgPl~Y~~~t-Dsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESF--AFSR------FLPD-FLLPGPLCYCPRT-DSFVTASSSWTLECYKYQ 204 (418)
T ss_pred ceEEEEEecCceEEEEeCCcE--EEEE------EcCC-CCCCcCeEEeecC-CEEEEecCceeEEEecHH
Confidence 344443 5999999987632 2211 1111 2223456777776 788999999999888754
No 437
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=86.79 E-value=37 Score=34.17 Aligned_cols=57 Identities=9% Similarity=0.162 Sum_probs=33.0
Q ss_pred CCCEEEEEeCCCc-----EEEEecCCCCccce-eecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 408 DGGRVATGSYSNL-----FRVFGCSEGSAEST-TLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 408 ~~~~l~~~~~dg~-----i~vwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
++.+.+.|+.|+. |..||+.+.+-... .+......+ -+..-+++..+.|+.|+.-.+
T Consensus 475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~--g~~~~~~~ly~vGG~~~~~~l 537 (571)
T KOG4441|consen 475 NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV--GVVVLGGKLYAVGGFDGNNNL 537 (571)
T ss_pred CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc--cEEEECCEEEEEecccCcccc
Confidence 5667778887763 67788887633321 122222221 123345677788888887766
No 438
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.56 E-value=6.4 Score=32.24 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=24.4
Q ss_pred ceeeEEEeCCC------CEEEEEeCCCcEEEEecCC
Q 010287 399 DKFECCLSGDG------GRVATGSYSNLFRVFGCSE 428 (513)
Q Consensus 399 ~v~~~~~s~~~------~~l~~~~~dg~i~vwd~~~ 428 (513)
.+.+++|||-| -+|++.+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 35689999955 3788999999999998764
No 439
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.55 E-value=19 Score=30.62 Aligned_cols=96 Identities=5% Similarity=0.066 Sum_probs=61.1
Q ss_pred EEEEEEeecCCEEEEEeC--CeEEEEEccCC-C-----CCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEE
Q 010287 343 ISDIKFARNGRHILSRDY--MTLKLWDINMD-S-----GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 414 (513)
Q Consensus 343 v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 414 (513)
-+.++|+.+.+.+..-+. -+|.-||...+ + +.+..++..+...... .+ .+++..+|++.++
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~-----PD------Gm~ID~eG~L~Va 228 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLE-----PD------GMTIDTEGNLYVA 228 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCC-----CC------cceEccCCcEEEE
Confidence 456788888777766443 67777884321 2 1222222111110000 01 4566778888888
Q ss_pred EeCCCcEEEEecCCCCccceeecCCCCceeEEEEcC
Q 010287 415 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 450 (513)
Q Consensus 415 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 450 (513)
.-..++|.-.|+.++ +++.+++.....+++++|--
T Consensus 229 ~~ng~~V~~~dp~tG-K~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 229 TFNGGTVQKVDPTTG-KILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EecCcEEEEECCCCC-cEEEEEEcCCCceEEEEecC
Confidence 888899999999998 66678887788888998853
No 440
>PHA02713 hypothetical protein; Provisional
Probab=86.36 E-value=25 Score=35.35 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=17.5
Q ss_pred CCCEEEEEeCCC--cEEEEecCCC
Q 010287 408 DGGRVATGSYSN--LFRVFGCSEG 429 (513)
Q Consensus 408 ~~~~l~~~~~dg--~i~vwd~~~~ 429 (513)
++++.++|+.++ .+..||+.+.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccc
Confidence 778888999888 6777887766
No 441
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.19 E-value=32 Score=37.18 Aligned_cols=80 Identities=18% Similarity=0.283 Sum_probs=53.0
Q ss_pred CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcc-----eeeec-------ccCc--cccc-cccCCeEEEEEeCCCCeEE
Q 010287 233 YHINSISNNSDGETFISADDLRINLWNLEISNQ-----SFNIV-------DVKP--ANME-DLTEVITSAEFHPTHCNML 297 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~-----~~~~~-------~~~~--~~~~-~~~~~i~~~~~~~~~~~~l 297 (513)
..|.|+....+|+.|++|.||.|+-.-...... +.++- .+-| ..+. .+.++|..++....- .++
T Consensus 179 ~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR-~Il 257 (1311)
T KOG1900|consen 179 VSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR-NIL 257 (1311)
T ss_pred ceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc-cee
Confidence 348899988899999999777444222221110 10000 0001 1233 567899999998876 899
Q ss_pred EEEeCCCcEEEEEcCC
Q 010287 298 AYSSSKGSIRLIDMRQ 313 (513)
Q Consensus 298 ~~~~~dg~i~vwd~~~ 313 (513)
.+-++.|.|.+||+..
T Consensus 258 Y~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 258 YVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeccCceEEEEEccC
Confidence 9999999999999976
No 442
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=85.92 E-value=34 Score=32.97 Aligned_cols=59 Identities=10% Similarity=0.088 Sum_probs=37.8
Q ss_pred CCeEEEEeccCCCEEEEEc-CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCC
Q 010287 233 YHINSISNNSDGETFISAD-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT 292 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (513)
...+.|+|.|++++|++-. .|.|++++..+.... .+..+..............|+++|+
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~-~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVK-VVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCcee-eeecCCceeccCCCCceeeEEECCC
Confidence 4478999999999888875 699999986543321 1111110001113566899999987
No 443
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.54 E-value=11 Score=30.90 Aligned_cols=33 Identities=15% Similarity=0.332 Sum_probs=25.5
Q ss_pred ccceeEEEeecC----CCceEEEeecCCeEEEEEccC
Q 010287 113 EKINKIRWCQSA----NSALYLLSTNDKTIKLWKVQE 145 (513)
Q Consensus 113 ~~i~~i~~~~~~----~~~~l~s~s~d~~i~vw~~~~ 145 (513)
..|.+++|+|.. .+.+|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999832 245677779999999998764
No 444
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=85.15 E-value=25 Score=30.76 Aligned_cols=185 Identities=14% Similarity=0.041 Sum_probs=97.0
Q ss_pred eEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCc
Q 010287 235 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 314 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 314 (513)
-..+...||+..-++-....|.-.|.++.+. +.+. ...+.-........|.+.| ++-+++.. |.---.|..++
T Consensus 106 Phgiv~gpdg~~Witd~~~aI~R~dpkt~ev--t~f~---lp~~~a~~nlet~vfD~~G-~lWFt~q~-G~yGrLdPa~~ 178 (353)
T COG4257 106 PHGIVVGPDGSAWITDTGLAIGRLDPKTLEV--TRFP---LPLEHADANLETAVFDPWG-NLWFTGQI-GAYGRLDPARN 178 (353)
T ss_pred CceEEECCCCCeeEecCcceeEEecCcccce--EEee---cccccCCCcccceeeCCCc-cEEEeecc-ccceecCcccC
Confidence 4456667777666653222455555543321 1111 1222234567788899998 77777653 21111121111
Q ss_pred ccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccc
Q 010287 315 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE 393 (513)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (513)
. +++|..+.. ..-..|+..|+|+.-++.-. ..|-..|... + .-..+..........
T Consensus 179 ~-----i~vfpaPqG-----------~gpyGi~atpdGsvwyaslagnaiaridp~~-~-~aev~p~P~~~~~gs----- 235 (353)
T COG4257 179 V-----ISVFPAPQG-----------GGPYGICATPDGSVWYASLAGNAIARIDPFA-G-HAEVVPQPNALKAGS----- 235 (353)
T ss_pred c-----eeeeccCCC-----------CCCcceEECCCCcEEEEeccccceEEccccc-C-CcceecCCCcccccc-----
Confidence 1 333333322 24567888999998877432 4455555543 2 222232222211111
Q ss_pred cCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCcee
Q 010287 394 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 456 (513)
Q Consensus 394 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 456 (513)
..+.-+|.|+.-++....+.+.-||.....-....+.+....-.++.+...++.-.
T Consensus 236 -------Rriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~ 291 (353)
T COG4257 236 -------RRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWL 291 (353)
T ss_pred -------cccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEe
Confidence 14556788888888778888999988766444455555554445555554444333
No 445
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=84.58 E-value=20 Score=34.31 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=41.7
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCC
Q 010287 407 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 461 (513)
Q Consensus 407 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 461 (513)
..+.|++.++..|-|++||.- +......+.+-...+..+..+.+|++++..+..
T Consensus 571 TesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 571 TESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred ccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 345699999999999999965 323346677778889999999999987665544
No 446
>PHA02713 hypothetical protein; Provisional
Probab=84.08 E-value=22 Score=35.63 Aligned_cols=23 Identities=0% Similarity=0.023 Sum_probs=17.6
Q ss_pred CCCeEEEEEeCCC--cEEEEEcCCcc
Q 010287 292 THCNMLAYSSSKG--SIRLIDMRQSA 315 (513)
Q Consensus 292 ~~~~~l~~~~~dg--~i~vwd~~~~~ 315 (513)
++ +++++|+.++ .+..||..+.+
T Consensus 512 ~~-~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 512 DN-TIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CC-EEEEEeeecceeehhhcCccccc
Confidence 44 8899999988 67777777654
No 447
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=83.72 E-value=3.3 Score=23.68 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=15.6
Q ss_pred cCCeeEEEEeCCCCEEEEEc
Q 010287 485 SMKLLHLAWHPSENSIACAA 504 (513)
Q Consensus 485 ~~~i~~~~~sp~~~~la~~~ 504 (513)
.......+|||||+.|+-.+
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s 27 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTS 27 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEE
T ss_pred CccccCEEEecCCCEEEEEe
Confidence 55678899999999999555
No 448
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=82.43 E-value=0.25 Score=45.98 Aligned_cols=138 Identities=9% Similarity=0.062 Sum_probs=87.2
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEE-EeC
Q 010287 282 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDY 360 (513)
Q Consensus 282 ~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~~ 360 (513)
.......|-|.+ .-++.++.+..+..||- .++...... ..+....++|..++..++. +..
T Consensus 35 v~pi~~~w~~e~-~nlavaca~tiv~~YD~-agq~~le~n-----------------~tg~aldm~wDkegdvlavlAek 95 (615)
T KOG2247|consen 35 VGPIIHRWRPEG-HNLAVACANTIVIYYDK-AGQVILELN-----------------PTGKALDMAWDKEGDVLAVLAEK 95 (615)
T ss_pred cccceeeEecCC-CceehhhhhhHHHhhhh-hcceecccC-----------------CchhHhhhhhccccchhhhhhhc
Confidence 334456678887 44788888899999984 333211100 0134566788887776665 333
Q ss_pred -CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCC
Q 010287 361 -MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS 439 (513)
Q Consensus 361 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 439 (513)
+.+.+||+.++...--...+.... + -+.|++....++.+...|.+.|++..+. ........|
T Consensus 96 ~~piylwd~n~eytqqLE~gg~~s~-s---------------ll~wsKg~~el~ig~~~gn~viynhgts-R~iiv~Gkh 158 (615)
T KOG2247|consen 96 TGPIYLWDVNSEYTQQLESGGTSSK-S---------------LLAWSKGTPELVIGNNAGNIVIYNHGTS-RRIIVMGKH 158 (615)
T ss_pred CCCeeechhhhhhHHHHhccCcchH-H---------------HHhhccCCccccccccccceEEEeccch-hhhhhhccc
Confidence 999999998521111111111110 0 2578988889999999999999998765 332344448
Q ss_pred CCceeEEEEcCCCCce
Q 010287 440 KNPMRRQVQTPSRPSR 455 (513)
Q Consensus 440 ~~~v~~~~~~~~~~~l 455 (513)
...+.++++.+.+..+
T Consensus 159 ~RRgtq~av~lEd~vi 174 (615)
T KOG2247|consen 159 QRRGTQIAVTLEDYVI 174 (615)
T ss_pred ccceeEEEecccceee
Confidence 8888888888765543
No 449
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=80.97 E-value=42 Score=30.24 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=25.7
Q ss_pred CeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC
Q 010287 283 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 313 (513)
Q Consensus 283 ~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 313 (513)
....++++++| .++++--..+.|..|+..+
T Consensus 187 ~s~g~~~D~~G-~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 187 QSDGMAIDPNG-NLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp SECEEEEETTT-EEEEEECCCTEEEEEETTT
T ss_pred CCceEEECCCC-cEEEecCCCCeEEEEeCCC
Confidence 45678889988 8999999999999999875
No 450
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=80.21 E-value=83 Score=33.18 Aligned_cols=137 Identities=14% Similarity=0.142 Sum_probs=78.3
Q ss_pred cCCeEEEEec---c----CCCEEEEEcCCeEEEEEcCCCcc------eeeecccCc-cccc---cccCCeEEEEEeCCCC
Q 010287 232 DYHINSISNN---S----DGETFISADDLRINLWNLEISNQ------SFNIVDVKP-ANME---DLTEVITSAEFHPTHC 294 (513)
Q Consensus 232 ~~~v~~~~~~---~----~~~~l~s~~d~~i~vwd~~~~~~------~~~~~~~~~-~~~~---~~~~~i~~~~~~~~~~ 294 (513)
..+|..|+|. . ..++|++=....+.|+...-.+. ....++..| ..+. ....+..+++|+|...
T Consensus 79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~ 158 (765)
T PF10214_consen 79 GSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQ 158 (765)
T ss_pred CCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCcc
Confidence 3567778877 2 22455554677777777321111 111111111 1111 1245677999999887
Q ss_pred eEEEEEeCCCcEEEEEcCCcccccc-cceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccC
Q 010287 295 NMLAYSSSKGSIRLIDMRQSALCDT-HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 370 (513)
Q Consensus 295 ~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~ 370 (513)
..||.....|...|||+........ ..+........ ...-.........|.|.++...|+.++...+.++|++.
T Consensus 159 ~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gs--i~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~ 233 (765)
T PF10214_consen 159 RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGS--IIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFES 233 (765)
T ss_pred ceEEEEeccCcEEEEEeccccccCCcceeeccCCCcc--ccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCC
Confidence 8999999999999999922211111 11111111000 00001112456678999998999999888999999985
No 451
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=79.95 E-value=68 Score=32.00 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=21.9
Q ss_pred EeCCCC---EEEEEeCCCcEEEEecCCCCc
Q 010287 405 LSGDGG---RVATGSYSNLFRVFGCSEGSA 431 (513)
Q Consensus 405 ~s~~~~---~l~~~~~dg~i~vwd~~~~~~ 431 (513)
+..+|+ .++.+..+|.+++.|..+++.
T Consensus 308 ~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 308 LKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred eccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 335666 788999999999999999854
No 452
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=79.20 E-value=9.3 Score=21.72 Aligned_cols=30 Identities=17% Similarity=0.123 Sum_probs=19.7
Q ss_pred ccCCeEEEEEeCCCCeEEEEEeCC--CcEEEE
Q 010287 280 LTEVITSAEFHPTHCNMLAYSSSK--GSIRLI 309 (513)
Q Consensus 280 ~~~~i~~~~~~~~~~~~l~~~~~d--g~i~vw 309 (513)
.........|+|||..++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345678899999995555555556 666665
No 453
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=78.78 E-value=5.1 Score=20.85 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=20.7
Q ss_pred ccEEEEEEcCCCCEEEeecCCCcEEEEE
Q 010287 36 DIISAIEFDKSGDHLATGDRGGRVVLFE 63 (513)
Q Consensus 36 ~~V~~v~~sp~g~~latg~~dg~i~iw~ 63 (513)
..|.+++.++. +++++...+.+|||.
T Consensus 2 E~i~aia~g~~--~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDS--WVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCC--EEEEEeCCCeEEecC
Confidence 46788887754 899999889999984
No 454
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=78.76 E-value=39 Score=29.43 Aligned_cols=110 Identities=11% Similarity=0.098 Sum_probs=55.2
Q ss_pred EEEeecCCEEEEEeC----CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC-c
Q 010287 346 IKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN-L 420 (513)
Q Consensus 346 i~~sp~~~~l~~~~~----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~ 420 (513)
-.+-|||++|.+|++ ..+++++... ...-.......... .. .+.+ -....-|||+.|+.|+.+. .
T Consensus 72 g~~L~dG~ll~tGG~~~G~~~ir~~~p~~-~~~~~~w~e~~~~m-~~------~RWY--pT~~~L~DG~vlIvGG~~~~t 141 (243)
T PF07250_consen 72 GAFLPDGRLLQTGGDNDGNKAIRIFTPCT-SDGTCDWTESPNDM-QS------GRWY--PTATTLPDGRVLIVGGSNNPT 141 (243)
T ss_pred cCCCCCCCEEEeCCCCccccceEEEecCC-CCCCCCceECcccc-cC------CCcc--ccceECCCCCEEEEeCcCCCc
Confidence 346689999999764 5577777542 00000000000000 00 1111 1456678999999888764 3
Q ss_pred EEEEecCCCCcccee---ecC-----CCCceeEEEEcCCCCceeeecCCCeEE
Q 010287 421 FRVFGCSEGSAESTT---LEA-----SKNPMRRQVQTPSRPSRPLGSLSGVVR 465 (513)
Q Consensus 421 i~vwd~~~~~~~~~~---~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~ 465 (513)
..+|........... +.. ...--..+...|+|+.++.+..+..|.
T Consensus 142 ~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 142 YEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY 194 (243)
T ss_pred ccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence 445543221111111 111 111222566689999999988665544
No 455
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=78.75 E-value=9.4 Score=21.99 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=21.6
Q ss_pred ecCCEEEEEe-C-CeEEEEEccCCCCCeeeeec
Q 010287 350 RNGRHILSRD-Y-MTLKLWDINMDSGPVATFQV 380 (513)
Q Consensus 350 p~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~ 380 (513)
|+++.|++++ . +.|.++|..+ .+.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEEC
Confidence 5677777755 3 9999999975 666666554
No 456
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=76.48 E-value=90 Score=31.51 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=16.5
Q ss_pred CCCeEEEEEeCCC------cEEEEEcCCccc
Q 010287 292 THCNMLAYSSSKG------SIRLIDMRQSAL 316 (513)
Q Consensus 292 ~~~~~l~~~~~dg------~i~vwd~~~~~~ 316 (513)
++ .+.++|+.++ .+..||..+...
T Consensus 427 ~g-~iYi~GG~~~~~~~l~sve~YDP~t~~W 456 (571)
T KOG4441|consen 427 GG-KLYIIGGGDGSSNCLNSVECYDPETNTW 456 (571)
T ss_pred CC-EEEEEcCcCCCccccceEEEEcCCCCce
Confidence 44 7888888665 466788777553
No 457
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=76.17 E-value=0.57 Score=43.79 Aligned_cols=140 Identities=7% Similarity=0.087 Sum_probs=85.8
Q ss_pred EEEEEEeecCCEEEE-EeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEE-EEeCCCc
Q 010287 343 ISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNL 420 (513)
Q Consensus 343 v~~i~~sp~~~~l~~-~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~ 420 (513)
.....|-|.+.-++. +.+..+..||-. ++........... ..++|..++..++ .+-..+.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~a--gq~~le~n~tg~a----------------ldm~wDkegdvlavlAek~~p 98 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKA--GQVILELNPTGKA----------------LDMAWDKEGDVLAVLAEKTGP 98 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhh--cceecccCCchhH----------------hhhhhccccchhhhhhhcCCC
Confidence 344667776655555 445788888865 3433333222221 2688888887655 4556789
Q ss_pred EEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCcccc-ccCCeeEEEEeCCCCE
Q 010287 421 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD-FSMKLLHLAWHPSENS 499 (513)
Q Consensus 421 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~sp~~~~ 499 (513)
+++||+.+.......+.+. ..-.-+.|++....++.+...|.+++.+.+... .. -..+ |..++++++|.+.+..
T Consensus 99 iylwd~n~eytqqLE~gg~-~s~sll~wsKg~~el~ig~~~gn~viynhgtsR---~i-iv~Gkh~RRgtq~av~lEd~v 173 (615)
T KOG2247|consen 99 IYLWDVNSEYTQQLESGGT-SSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSR---RI-IVMGKHQRRGTQIAVTLEDYV 173 (615)
T ss_pred eeechhhhhhHHHHhccCc-chHHHHhhccCCccccccccccceEEEeccchh---hh-hhhcccccceeEEEeccccee
Confidence 9999998653322222221 112236789999999999888888883222111 11 1123 7889999999999876
Q ss_pred EEEEcC
Q 010287 500 IACAAS 505 (513)
Q Consensus 500 la~~~~ 505 (513)
+..+.+
T Consensus 174 il~dcd 179 (615)
T KOG2247|consen 174 ILCDCD 179 (615)
T ss_pred eecCcH
Confidence 665443
No 458
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.93 E-value=81 Score=34.42 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=50.7
Q ss_pred ccEEEEEEeecCCEEEEEeCCeEEEEEccCC------CCCeeeeecccc----cccccccccccCCccceeeEEEeCCCC
Q 010287 341 ASISDIKFARNGRHILSRDYMTLKLWDINMD------SGPVATFQVHEH----LRPKLCDLYENDSIFDKFECCLSGDGG 410 (513)
Q Consensus 341 ~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~s~~~~ 410 (513)
..|.++....+|+.+++|.+| .+|.+.-. ++....+..... ..+.+..+. .....+|..+......+
T Consensus 179 ~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~-~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 179 VSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP-GSSKDPIRQITIDNSRN 255 (1311)
T ss_pred ceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC-CCCCCcceeeEeccccc
Confidence 468999988899999999887 44544310 010111100000 011111111 01112355788888888
Q ss_pred EEEEEeCCCcEEEEecCCC
Q 010287 411 RVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 411 ~l~~~~~dg~i~vwd~~~~ 429 (513)
.+.+-+..|.|.+|++...
T Consensus 256 IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred eeeeeccCceEEEEEccCC
Confidence 8999999999999999873
No 459
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=75.71 E-value=12 Score=37.60 Aligned_cols=31 Identities=13% Similarity=0.425 Sum_probs=25.3
Q ss_pred CCceEEEeecCCeEEEEEccCceeeeeeccc
Q 010287 125 NSALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155 (513)
Q Consensus 125 ~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~ 155 (513)
+..++++.+.|+++|+||+.++++.....+.
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 4568889999999999999999886655443
No 460
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=75.39 E-value=45 Score=32.12 Aligned_cols=30 Identities=10% Similarity=0.090 Sum_probs=24.9
Q ss_pred eeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 400 KFECCLSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 400 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
+.+++..+..+.|++.+.+|.|.+|++..+
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 558899998899999999999999999753
No 461
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.12 E-value=1.1e+02 Score=31.31 Aligned_cols=173 Identities=12% Similarity=0.136 Sum_probs=84.1
Q ss_pred CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCC
Q 010287 253 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 332 (513)
Q Consensus 253 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 332 (513)
-.|+|++.. |..+. ++......+-.+.|+.+. .|+....+|.+++|++.... ......-++.
T Consensus 64 ~~I~If~~s-G~lL~--------~~~w~~~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~ge~-ie~~svg~e~------ 125 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLG--------RILWKHGELIGMGWSDDE--ELICVQKDGTVHVYGLLGEF-IESNSVGFES------ 125 (829)
T ss_pred eeEEEEecc-ccchH--------HHHhcCCCeeeecccCCc--eEEEEeccceEEEeecchhh-hccccccccc------
Confidence 347777775 33222 222334478899999885 56777899999999975322 1110000111
Q ss_pred ccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEe---CCC
Q 010287 333 RSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS---GDG 409 (513)
Q Consensus 333 ~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~~ 409 (513)
....|..+.+..+|-.+.+.++..+.+-+... ..+.+++.-.. ..+. ..+|. |..
T Consensus 126 ------~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~--~~~~~~~diP~--~~~~------------~~~Wt~~~~~~ 183 (829)
T KOG2280|consen 126 ------QMSDIVECRFFHNGVAVLTVSGQVILINGVEE--PKLRKMPDIPY--NELP------------KSCWTVFQPHR 183 (829)
T ss_pred ------ccCceeEEEEecCceEEEecCCcEEEEcCCCc--chhhhCCCCCC--ccCC------------CcceeEecCCC
Confidence 11345555555566666555543334433321 11222211000 0000 11222 211
Q ss_pred C--EEE-EEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 410 G--RVA-TGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 410 ~--~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
. .++ ..-..+ ..++-.+........+......+..+.+||++++|+.-.++|.|.+
T Consensus 184 ~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~ 242 (829)
T KOG2280|consen 184 QSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWV 242 (829)
T ss_pred cceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEE
Confidence 1 111 110111 1122222221112233333456789999999999999999999988
No 462
>PRK10115 protease 2; Provisional
Probab=73.72 E-value=1.2e+02 Score=31.57 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=62.2
Q ss_pred eEEEEeccCCCEEEEE-c-----CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC-----
Q 010287 235 INSISNNSDGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----- 303 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~-~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----- 303 (513)
+..+.++|++++|+.+ + ...|++.|+.++..+.. .+.+ .-..++|.+|+..++++...+
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-------~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~ 198 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-------LLDN---VEPSFVWANDSWTFYYVRKHPVTLLP 198 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-------cccC---cceEEEEeeCCCEEEEEEecCCCCCC
Confidence 6678899999999876 2 34588888886643221 1221 114699999984444444322
Q ss_pred CcEEEEEcCCcccccccceeeccccCCCCccccccccccEE-EEEEeecCCEEEEE--e--CCeEEEEEcc
Q 010287 304 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS-DIKFARNGRHILSR--D--YMTLKLWDIN 369 (513)
Q Consensus 304 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~i~~sp~~~~l~~~--~--~~~v~iwd~~ 369 (513)
..|..+++.++.... ...++... .... .+..+.++++++.. + ++.+.+++..
T Consensus 199 ~~v~~h~lgt~~~~d--~lv~~e~~------------~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 199 YQVWRHTIGTPASQD--ELVYEEKD------------DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CEEEEEECCCChhHC--eEEEeeCC------------CCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 256666666653221 22333221 1122 23334488877652 2 2688888854
No 463
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=72.38 E-value=9.9 Score=19.84 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCEEEeecCCCcEEEE
Q 010287 38 ISAIEFDKSGDHLATGDRGGRVVLF 62 (513)
Q Consensus 38 V~~v~~sp~g~~latg~~dg~i~iw 62 (513)
...++.+++|+++++=+.+.+|+++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 3667888888877777777777764
No 464
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=71.70 E-value=1.7e+02 Score=32.37 Aligned_cols=24 Identities=8% Similarity=0.135 Sum_probs=14.4
Q ss_pred EEEEEeeCCCCCCCccCccccccc
Q 010287 59 VVLFERTDTRDNGGQRRDLEMMDY 82 (513)
Q Consensus 59 i~iw~~~~~~~~~~~~~~~~~~~~ 82 (513)
.++|+..+.+..+.........++
T Consensus 283 ~ivW~~rt~~l~G~~m~~s~~g~W 306 (1899)
T KOG4659|consen 283 TIVWQTRTSQLMGATMRKSIGGGW 306 (1899)
T ss_pred eeeeeeehhhhccccccchhcCcc
Confidence 589998877765544444333333
No 465
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=71.34 E-value=76 Score=28.32 Aligned_cols=144 Identities=9% Similarity=0.083 Sum_probs=82.1
Q ss_pred cEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCc
Q 010287 342 SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 420 (513)
Q Consensus 342 ~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 420 (513)
.+..+.++ +++...+++ .-++|.|+.++..+...-...... ..-.|.-.|++...+..|.-
T Consensus 88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~g----------------yaygv~vsGn~aYVadlddg 149 (370)
T COG5276 88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDG----------------YAYGVYVSGNYAYVADLDDG 149 (370)
T ss_pred hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCc----------------eEEEEEecCCEEEEeeccCc
Confidence 45566666 456666665 779999998755554332222211 13455667888888885555
Q ss_pred EEEEecCCCCccc--eeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCC
Q 010287 421 FRVFGCSEGSAES--TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN 498 (513)
Q Consensus 421 i~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~ 498 (513)
+.+.|+.+..... -.+......-..+++|- ++-..+..|+.+.+.+-..+....+.+ ....+..+.++..+++..
T Consensus 150 fLivdvsdpssP~lagrya~~~~d~~~v~ISG--n~AYvA~~d~GL~ivDVSnp~sPvli~-~~n~g~g~~sv~vsdnr~ 226 (370)
T COG5276 150 FLIVDVSDPSSPQLAGRYALPGGDTHDVAISG--NYAYVAWRDGGLTIVDVSNPHSPVLIG-SYNTGPGTYSVSVSDNRA 226 (370)
T ss_pred EEEEECCCCCCceeeeeeccCCCCceeEEEec--CeEEEEEeCCCeEEEEccCCCCCeEEE-EEecCCceEEEEecCCee
Confidence 7788988764432 22233333334556654 444455567777774444333211211 222344678888888877
Q ss_pred EEEEEcCC
Q 010287 499 SIACAASN 506 (513)
Q Consensus 499 ~la~~~~~ 506 (513)
+++...++
T Consensus 227 y~vvy~eg 234 (370)
T COG5276 227 YLVVYDEG 234 (370)
T ss_pred EEEEcccc
Confidence 77665544
No 466
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=71.31 E-value=45 Score=25.72 Aligned_cols=71 Identities=15% Similarity=0.280 Sum_probs=46.6
Q ss_pred EEEeCCCCeEEEEEeCCCcEEEEEcCCcccc----cccceeeccccCCCCccccccccccEEEEEEee-----cCCEEEE
Q 010287 287 AEFHPTHCNMLAYSSSKGSIRLIDMRQSALC----DTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-----NGRHILS 357 (513)
Q Consensus 287 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-----~~~~l~~ 357 (513)
-.|.... ..|+.++.-|.|.|++....... ...++.+... ..|++++-.+ +...|+.
T Consensus 4 GkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin-------------~~italaaG~l~~~~~~D~Lli 69 (136)
T PF14781_consen 4 GKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN-------------QEITALAAGRLKPDDGRDCLLI 69 (136)
T ss_pred EEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEECC-------------CceEEEEEEecCCCCCcCEEEE
Confidence 3556666 46888889999999987654321 1112233222 4577776544 3568888
Q ss_pred EeCCeEEEEEccCC
Q 010287 358 RDYMTLKLWDINMD 371 (513)
Q Consensus 358 ~~~~~v~iwd~~~~ 371 (513)
|+...+..||+..+
T Consensus 70 Gt~t~llaYDV~~N 83 (136)
T PF14781_consen 70 GTQTSLLAYDVENN 83 (136)
T ss_pred eccceEEEEEcccC
Confidence 99899999999863
No 467
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.17 E-value=1.3e+02 Score=32.76 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=28.0
Q ss_pred cccEEEEEEcCCCCEEEeecCCCcEEEEEeeCC
Q 010287 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDT 67 (513)
Q Consensus 35 ~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~ 67 (513)
......++|+|...++|.|+..|.|.++....-
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccce
Confidence 346678999999999999999999999985443
No 468
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=70.76 E-value=1e+02 Score=29.54 Aligned_cols=58 Identities=12% Similarity=0.243 Sum_probs=36.9
Q ss_pred eEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEcc
Q 010287 295 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDIN 369 (513)
Q Consensus 295 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~ 369 (513)
.+|..-+.||.+.+|+-+.-.. .+.+...- -...+.|.+....+++++. ..+..|...
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f----~~~lp~~l-------------lPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAF----SRFLPDFL-------------LPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEE----EEEcCCCC-------------CCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 6788899999999999654321 11111111 1233668887777777664 788888764
No 469
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=70.26 E-value=1.5e+02 Score=31.27 Aligned_cols=33 Identities=6% Similarity=-0.268 Sum_probs=25.9
Q ss_pred eeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc
Q 010287 400 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 432 (513)
Q Consensus 400 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 432 (513)
|.++....-+.+++..-.||+|.++|..+.+.+
T Consensus 262 V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~ 294 (753)
T PF11635_consen 262 VVSITSPELDIVVAFAFSDGSIEFRDRNTMKEL 294 (753)
T ss_pred EEEEEecccCcEEEEEEcCCeEEEEecCcchhh
Confidence 446666667778999999999999999877433
No 470
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.33 E-value=1.2e+02 Score=29.65 Aligned_cols=84 Identities=12% Similarity=0.160 Sum_probs=48.9
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC-cc---cccc----cceeeccccCCCCccccccccccEEEEEEeecC-
Q 010287 282 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SA---LCDT----HSKLFEEQEAPGTRSFFTEIIASISDIKFARNG- 352 (513)
Q Consensus 282 ~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~- 352 (513)
-.|..+..++.| ..++-.+.+|.+.++=.+. |. ..+. ..+++.... ..+.....-.+..++|+|+.
T Consensus 104 feV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~----~~ftss~~ltl~Qa~WHP~S~ 178 (741)
T KOG4460|consen 104 FEVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE----RFFTSSTSLTLKQAAWHPSSI 178 (741)
T ss_pred EEEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc----eeeccCCceeeeeccccCCcc
Confidence 356788889999 8888888999877654221 11 0000 011111111 01111122357788999954
Q ss_pred ---CEEEEEeCCeEEEEEccC
Q 010287 353 ---RHILSRDYMTLKLWDINM 370 (513)
Q Consensus 353 ---~~l~~~~~~~v~iwd~~~ 370 (513)
.+++-.+|..+++||+..
T Consensus 179 ~D~hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 179 LDPHLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred CCceEEEEecCcEEEEEecCC
Confidence 455557789999999975
No 471
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=69.02 E-value=21 Score=35.78 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=24.9
Q ss_pred CCeEEEEEeC----CCCeEEEEEeCCCcEEEEEcCCccc
Q 010287 282 EVITSAEFHP----THCNMLAYSSSKGSIRLIDMRQSAL 316 (513)
Q Consensus 282 ~~i~~~~~~~----~~~~~l~~~~~dg~i~vwd~~~~~~ 316 (513)
..+..++.+. +. .++++.+.|+.+|+||+.++..
T Consensus 215 ~~~~~~~~~~~~~~~~-~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 215 SVAASLAVSSSEINDD-TFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp --EEEEEE-----ETT-TEEEEEETTSEEEEEETTTTCE
T ss_pred CccceEEEecceeCCC-CEEEEEeCCCeEEEEECCCCeE
Confidence 3445556655 44 7899999999999999999886
No 472
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=68.35 E-value=1.1e+02 Score=28.86 Aligned_cols=154 Identities=13% Similarity=0.121 Sum_probs=79.1
Q ss_pred CeEEEEEcCCCcceeeecccCccccccccCCeEEEEE--eC-CCCeEEEEEeCCCcEEEEEcCC---cccccccceeecc
Q 010287 253 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF--HP-THCNMLAYSSSKGSIRLIDMRQ---SALCDTHSKLFEE 326 (513)
Q Consensus 253 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~-~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~ 326 (513)
.+|++|.+......++.+.-....+......++.+++ +| ++..+.+....+|.+..|.+.. +....+.++.|..
T Consensus 127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence 5689997763322222111000011112234677776 33 3434666778899988887752 3333445666665
Q ss_pred ccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeee-cccccccccccccccCCccceeeEE
Q 010287 327 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECC 404 (513)
Q Consensus 327 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (513)
. +.+..|........|+.+.+ --|.-|+.+........+- .-... .-..++-.++
T Consensus 207 ~-------------sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~----------~l~aDvEGla 263 (381)
T PF02333_consen 207 G-------------SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGD----------GLVADVEGLA 263 (381)
T ss_dssp S-------------S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSS----------SB-S-EEEEE
T ss_pred C-------------CcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeeccccc----------ccccCccceE
Confidence 4 36888888888888888886 6666677653222111111 00000 0011233555
Q ss_pred Ee--CCC-CEEEEEe-CCCcEEEEecCCC
Q 010287 405 LS--GDG-GRVATGS-YSNLFRVFGCSEG 429 (513)
Q Consensus 405 ~s--~~~-~~l~~~~-~dg~i~vwd~~~~ 429 (513)
+- +++ .||++.+ .+++..||+.+..
T Consensus 264 ly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 264 LYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 53 344 3666655 5678999998753
No 473
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=68.11 E-value=1.3e+02 Score=29.73 Aligned_cols=109 Identities=16% Similarity=0.079 Sum_probs=59.8
Q ss_pred eeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceee-cCCCCceeEEEEcCCCCceeeecCCCeEEE-ecCCCCCccccC
Q 010287 401 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL-EASKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDAN 478 (513)
Q Consensus 401 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~-~~~~~~~~~~~~ 478 (513)
+.+++..++.. -.|+...-+..|+.++........ ....++|..+.-.|+++ |-.|+.+|.+++ .++.+.....-.
T Consensus 379 t~~~~d~~g~l-Wlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~~pe~~~v~n~ln~ 456 (671)
T COG3292 379 TTTLEDSRGRL-WLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKRDPESGRVLNLLNP 456 (671)
T ss_pred chhhhccCCcE-EEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEecCccccchhccccc
Confidence 35666665554 444544335567776521222222 23456788888889988 888889999998 222111110011
Q ss_pred CccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287 479 GNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 479 ~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 512 (513)
....--.+.|..+..-|+|++-+ ++.+++..|.
T Consensus 457 ~~~~l~~s~~~~lg~~~~g~Lw~-a~g~gva~~~ 489 (671)
T COG3292 457 GSHGLDGSRVEQLGLGPDGRLWL-AAGSGVAAWE 489 (671)
T ss_pred ccCcCCcchhhhhccCCCCceEE-Eecceeeeec
Confidence 11111245688899999998633 3333445543
No 474
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=67.72 E-value=74 Score=26.78 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=35.6
Q ss_pred CCCEEEE-E--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccc
Q 010287 243 DGETFIS-A--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 316 (513)
Q Consensus 243 ~~~~l~s-~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 316 (513)
++.++.+ | ....|++||+.+++...... +.+..+ ....++.+ .+ .+..-.-.+|.-..+|.++-+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~-l~~~~~--FgEGit~~---gd--~~y~LTw~egvaf~~d~~t~~~ 123 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEK-LAPDTV--FGEGITKL---GD--YFYQLTWKEGVAFKYDADTLEE 123 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEee-cCCccc--cccceeec---cc--eEEEEEeccceeEEEChHHhhh
Confidence 3455555 3 37889999999777654321 111011 11222221 12 3444455677778888877554
No 475
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=67.33 E-value=3.5 Score=41.96 Aligned_cols=97 Identities=13% Similarity=0.271 Sum_probs=59.0
Q ss_pred cccccccccceeccccccccc----cccccEEEEEEcC---CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccc
Q 010287 12 AQPLEWKFSQVFGERTAGEEV----QEVDIISAIEFDK---SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSM 84 (513)
Q Consensus 12 ~~~~~w~~~~~~~~~~~~~~~----~h~~~V~~v~~sp---~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 84 (513)
..+-.|++.++.|+....-.+ .-...+.-|.|.| +.-++..+..+++|++.++.....
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--------------- 217 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--------------- 217 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH---------------
Confidence 345678887766654322111 1123334455544 577899999999998877654332
Q ss_pred cCCCcceEeccccCCCCcccccccccccccceeEEEe---------ecCCCceEEEeecCCeEEEEEcc
Q 010287 85 SRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWC---------QSANSALYLLSTNDKTIKLWKVQ 144 (513)
Q Consensus 85 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~---------~~~~~~~l~s~s~d~~i~vw~~~ 144 (513)
..+.+|. ..+..++|. -++||..|+.++.||.+++|.+.
T Consensus 218 ---------~l~rsHs------------~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 218 ---------SLFRSHS------------QRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ---------HHHHhcC------------CCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 2345565 333333321 15688899999999999998764
No 476
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=65.65 E-value=97 Score=27.40 Aligned_cols=194 Identities=14% Similarity=0.085 Sum_probs=111.4
Q ss_pred CeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287 234 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 312 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 312 (513)
.-..++-.+||..-+++ ..+.|--.|..+++...- . .+.......+..-||+... ++-+.. -|.-.|.+
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~y-------p-Lg~Ga~Phgiv~gpdg~~W-itd~~~-aI~R~dpk 132 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETY-------P-LGSGASPHGIVVGPDGSAW-ITDTGL-AIGRLDPK 132 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEE-------e-cCCCCCCceEEECCCCCee-EecCcc-eeEEecCc
Confidence 35677888899888887 578888888887764321 1 2234556778888998444 332222 55556665
Q ss_pred CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeeccccccccccccc
Q 010287 313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLY 392 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (513)
+.+ +..|..+.. --........|.+.|.+-+++..|.---.|- ....++.+....+...
T Consensus 133 t~e-----vt~f~lp~~--------~a~~nlet~vfD~~G~lWFt~q~G~yGrLdP--a~~~i~vfpaPqG~gp------ 191 (353)
T COG4257 133 TLE-----VTRFPLPLE--------HADANLETAVFDPWGNLWFTGQIGAYGRLDP--ARNVISVFPAPQGGGP------ 191 (353)
T ss_pred ccc-----eEEeecccc--------cCCCcccceeeCCCccEEEeeccccceecCc--ccCceeeeccCCCCCC------
Confidence 544 233332211 1114577788999999999875321111111 1233444444433211
Q ss_pred ccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeec-CCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 393 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE-ASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 393 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
..++..|||..-++.-.++.|-..|..++........ .-...-+.+-.+|.++.-++-...+.+..
T Consensus 192 --------yGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~r 258 (353)
T COG4257 192 --------YGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHR 258 (353)
T ss_pred --------cceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeE
Confidence 2789999999888877777888888776633221111 11233344555666666666555555544
No 477
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=64.03 E-value=1.8e+02 Score=29.85 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=29.7
Q ss_pred cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCC
Q 010287 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDT 67 (513)
Q Consensus 33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~ 67 (513)
....-++++.-+|.|+-++.+..||.|++|++...
T Consensus 12 k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r 46 (1636)
T KOG3616|consen 12 KEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPR 46 (1636)
T ss_pred cccceeeeeeecCCCceEEEEecCCcEEEEeeccc
Confidence 34567889999999999999999999999997543
No 478
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=63.38 E-value=1.9e+02 Score=29.97 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=42.1
Q ss_pred EEEEEeCCCCeEEEEEeCCC-----cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe
Q 010287 285 TSAEFHPTHCNMLAYSSSKG-----SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 359 (513)
Q Consensus 285 ~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~ 359 (513)
.-+.|-|.| ..+++-..|| .|..+. ++|-.... ++. -.+-...+..++|+-....++.+.
T Consensus 250 ~~LSWkpqg-S~~ati~td~~~~S~~ViFfE-rNGLrHGe----f~l---------r~~~dEk~~~~~wn~~s~vlav~~ 314 (1243)
T COG5290 250 HQLSWKPQG-SKYATIGTDGCSTSESVIFFE-RNGLRHGE----FDL---------RVGCDEKAFLENWNLLSTVLAVAE 314 (1243)
T ss_pred hccccccCC-ceeeeeccCCCCCcceEEEEc-cCCcccCC----ccc---------cCCchhhhhhhhhhHHHHHHHHhh
Confidence 457899999 8888877655 355554 23221110 000 001113456677777667777666
Q ss_pred CCeEEEEEccC
Q 010287 360 YMTLKLWDINM 370 (513)
Q Consensus 360 ~~~v~iwd~~~ 370 (513)
...+++|-..+
T Consensus 315 ~n~~~lwttkN 325 (1243)
T COG5290 315 GNLLKLWTTKN 325 (1243)
T ss_pred cceEEEEEccc
Confidence 68899998774
No 479
>PHA03098 kelch-like protein; Provisional
Probab=63.11 E-value=1.7e+02 Score=29.31 Aligned_cols=23 Identities=4% Similarity=0.044 Sum_probs=15.2
Q ss_pred CCCeEEEEEeCCC-----cEEEEEcCCcc
Q 010287 292 THCNMLAYSSSKG-----SIRLIDMRQSA 315 (513)
Q Consensus 292 ~~~~~l~~~~~dg-----~i~vwd~~~~~ 315 (513)
++ .+++.|+.++ .+..||..+..
T Consensus 342 ~~-~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 342 NN-RIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CC-EEEEEeCCCCCEecceEEEEcCCCCc
Confidence 44 7888888763 46677776544
No 480
>PRK13615 lipoprotein LpqB; Provisional
Probab=63.04 E-value=1.7e+02 Score=29.33 Aligned_cols=140 Identities=9% Similarity=0.007 Sum_probs=76.5
Q ss_pred EEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEE
Q 010287 344 SDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 422 (513)
Q Consensus 344 ~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 422 (513)
.+++.++++..++..+. +.+.++... +.......+.. ++.-.|.++| ++-+.-.+...+
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~--~~~~~~~~~~~-----------------Lt~PS~d~~g-~vWtv~~g~~~~ 396 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGD--RDAVLLDTRPG-----------------LVAPSLDAQG-YVWSTPASDPRG 396 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCC--CcceeeccCCc-----------------cccCcCcCCC-CEEEEeCCCceE
Confidence 67889999999887654 777777654 22222222221 1255677777 555544433445
Q ss_pred EEecCCCCcc-ceeecC-CCCceeEEEEcCCCCceeeec---CCCeEEE----ecCCCCCcc-ccCCccccccCCeeEEE
Q 010287 423 VFGCSEGSAE-STTLEA-SKNPMRRQVQTPSRPSRPLGS---LSGVVRR----VKGADNSAL-DANGNAFDFSMKLLHLA 492 (513)
Q Consensus 423 vwd~~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~---~d~~i~~----~~~~~~~~~-~~~~~~~~~~~~i~~~~ 492 (513)
+......... ...... ....|..+..|+||--++.-. ..+.|.+ +.+..+... ........-...+.+++
T Consensus 397 l~~~~~~G~~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~ 476 (557)
T PRK13615 397 LVAWGPDGVGHPVAVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDAT 476 (557)
T ss_pred EEEecCCCceEEeeccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeE
Confidence 4443321121 111222 235799999999998766543 2456776 322211111 00011111133889999
Q ss_pred EeCCCCEEEEE
Q 010287 493 WHPSENSIACA 503 (513)
Q Consensus 493 ~sp~~~~la~~ 503 (513)
|..++.+.+.+
T Consensus 477 W~~~~~laVl~ 487 (557)
T PRK13615 477 WVDELDVATLT 487 (557)
T ss_pred EcCCCEEEEEe
Confidence 99999986655
No 481
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=60.68 E-value=3.1e+02 Score=31.45 Aligned_cols=64 Identities=9% Similarity=0.052 Sum_probs=43.4
Q ss_pred eeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 400 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 400 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
|++++.-.+ +.+++....|.+.... +.+........+-.+.|..++......+.|.-. +|.+..
T Consensus 705 i~a~Avv~~-~~fvald~qg~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~-~G~Lf~ 768 (1774)
T PF11725_consen 705 ITAFAVVND-NKFVALDDQGDLTAHQ-KPGRPVPLSRPGLSGEIKDLALDEKQNLYALTS-TGELFR 768 (1774)
T ss_pred ceeEEEEcC-CceEEeccCCcccccc-CCCCCccCCCCCCCcchhheeeccccceeEecC-CCceee
Confidence 446777655 4556678889999988 655444344556678888999988877776654 555544
No 482
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=60.27 E-value=1.1e+02 Score=26.04 Aligned_cols=31 Identities=10% Similarity=0.030 Sum_probs=23.4
Q ss_pred CCeEEEEeccCCCEEEEEcCCeEEEEEcCCC
Q 010287 233 YHINSISNNSDGETFISADDLRINLWNLEIS 263 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~ 263 (513)
..+.+++..|-..-|+.|.++.+.+|.+...
T Consensus 135 ~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 135 EPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ 165 (215)
T ss_pred CCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence 4578888888655667777788999988643
No 483
>PHA03098 kelch-like protein; Provisional
Probab=60.27 E-value=1.9e+02 Score=28.95 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=15.3
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCC
Q 010287 408 DGGRVATGSYS-----NLFRVFGCSEG 429 (513)
Q Consensus 408 ~~~~l~~~~~d-----g~i~vwd~~~~ 429 (513)
+++.++.|+.+ +.+.+||+.+.
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 66777777654 46788887765
No 484
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=59.69 E-value=3.2e+02 Score=31.33 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=48.0
Q ss_pred CCeEEEEeccCCCE-EEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287 233 YHINSISNNSDGET-FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 310 (513)
Q Consensus 233 ~~v~~~~~~~~~~~-l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd 310 (513)
..+.+...+++++. +.++ +...+.+|++....-...-.-.....+.+......++.++++ .|+.+..+|.+..=+
T Consensus 438 ~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d---rLFvADseGkLYsa~ 514 (1774)
T PF11725_consen 438 DKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND---RLFVADSEGKLYSAD 514 (1774)
T ss_pred hhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCC---eEEEEeCCCCEEecc
Confidence 34667778888887 5566 566679998875421110000000133444456778888876 366778889888777
Q ss_pred cCCc
Q 010287 311 MRQS 314 (513)
Q Consensus 311 ~~~~ 314 (513)
+...
T Consensus 515 l~~~ 518 (1774)
T PF11725_consen 515 LPAA 518 (1774)
T ss_pred cccc
Confidence 6553
No 485
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=59.44 E-value=61 Score=22.99 Aligned_cols=42 Identities=10% Similarity=0.174 Sum_probs=25.9
Q ss_pred CCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC
Q 010287 302 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 360 (513)
Q Consensus 302 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~ 360 (513)
.+|.+..||..+++. ...+++ -...+.|++++|+.+++.+.-
T Consensus 35 ~~GRll~ydp~t~~~----~vl~~~-------------L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 35 PTGRLLRYDPSTKET----TVLLDG-------------LYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp --EEEEEEETTTTEE----EEEEEE-------------ESSEEEEEE-TTSSEEEEEEG
T ss_pred CCcCEEEEECCCCeE----EEehhC-------------CCccCeEEEcCCCCEEEEEec
Confidence 357778888887663 111111 135788999999998887653
No 486
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=59.27 E-value=1.8e+02 Score=28.31 Aligned_cols=61 Identities=7% Similarity=-0.000 Sum_probs=36.2
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC
Q 010287 282 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 352 (513)
Q Consensus 282 ~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~ 352 (513)
.....|+|.|++ .+|++--..|.|++++..++... .+..+.... ...-.+....|+++|+-
T Consensus 30 ~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~--~~~~l~~v~-------~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDN-QLWVTERATGKILRVNPETGEVK--VVFTLPEIV-------NDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCcee--eeecCCcee-------ccCCCCceeeEEECCCc
Confidence 446899999998 77776544699999986544311 011111000 00012568899999874
No 487
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=58.56 E-value=26 Score=18.74 Aligned_cols=23 Identities=9% Similarity=0.094 Sum_probs=19.2
Q ss_pred eEEEeecCCeEEEEEccCceeee
Q 010287 128 LYLLSTNDKTIKLWKVQEKKVKK 150 (513)
Q Consensus 128 ~l~s~s~d~~i~vw~~~~~~~~~ 150 (513)
.++.++.++.+...|.++|+...
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEE
Confidence 67788889999999998887654
No 488
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=55.44 E-value=42 Score=23.62 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=21.8
Q ss_pred eEEEeCCCCEEEEEe-CCCcEEEEecC
Q 010287 402 ECCLSGDGGRVATGS-YSNLFRVFGCS 427 (513)
Q Consensus 402 ~~~~s~~~~~l~~~~-~dg~i~vwd~~ 427 (513)
.+.++|++++|..++ ..+.|++|+..
T Consensus 58 GI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 58 GIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred eEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 789999999888665 67899999865
No 489
>PHA02790 Kelch-like protein; Provisional
Probab=55.03 E-value=2.2e+02 Score=28.07 Aligned_cols=23 Identities=0% Similarity=0.014 Sum_probs=15.3
Q ss_pred CCCeEEEEEeCCC---cEEEEEcCCcc
Q 010287 292 THCNMLAYSSSKG---SIRLIDMRQSA 315 (513)
Q Consensus 292 ~~~~~l~~~~~dg---~i~vwd~~~~~ 315 (513)
++ .+.+.|+.++ .+..||.++..
T Consensus 362 ~g-~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 362 NN-VIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred CC-EEEEecCcCCCCccEEEEeCCCCE
Confidence 45 7788887654 46678876644
No 490
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=54.45 E-value=2.4e+02 Score=29.30 Aligned_cols=26 Identities=31% Similarity=0.581 Sum_probs=18.1
Q ss_pred EEEEcCCCCEEEeecCCC-----cEEEEEee
Q 010287 40 AIEFDKSGDHLATGDRGG-----RVVLFERT 65 (513)
Q Consensus 40 ~v~~sp~g~~latg~~dg-----~i~iw~~~ 65 (513)
-++|-|.|..+||-..|| .|+.+...
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErN 281 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERN 281 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccC
Confidence 378999999988866444 36666643
No 491
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=54.35 E-value=1.5e+02 Score=25.88 Aligned_cols=146 Identities=10% Similarity=0.135 Sum_probs=72.7
Q ss_pred EeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe----ecCC--EEEEEeC--
Q 010287 289 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA----RNGR--HILSRDY-- 360 (513)
Q Consensus 289 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s----p~~~--~l~~~~~-- 360 (513)
-+|+. ..+++.-..+-+++||+...++ ..+.. +....+.+- -.|+ -|+++++
T Consensus 63 t~P~k-S~vItt~Kk~Gl~VYDLsGkqL-----qs~~~--------------Gk~NNVDLrygF~LgG~~idiaaASdR~ 122 (364)
T COG4247 63 TNPDK-SLVITTVKKAGLRVYDLSGKQL-----QSVNP--------------GKYNNVDLRYGFQLGGQSIDIAAASDRQ 122 (364)
T ss_pred CCcCc-ceEEEeeccCCeEEEecCCCee-----eecCC--------------CcccccccccCcccCCeEEEEEeccccc
Confidence 35666 6778888888999999865443 11111 112222211 1222 2444444
Q ss_pred -CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC---CC-EEEEEeCCCcEEEEecCCCCcccee
Q 010287 361 -MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD---GG-RVATGSYSNLFRVFGCSEGSAESTT 435 (513)
Q Consensus 361 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~-~l~~~~~dg~i~vwd~~~~~~~~~~ 435 (513)
..|.+|.+..+.+.+..+.-...+.+ ..+.++..+++..+ |. ++++...+|.|.-|.+-....-.
T Consensus 123 ~~~i~~y~Idp~~~~L~sitD~n~p~s--------s~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGk-- 192 (364)
T COG4247 123 NDKIVFYKIDPNPQYLESITDSNAPYS--------SSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGK-- 192 (364)
T ss_pred CCeEEEEEeCCCccceeeccCCCCccc--------cCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCce--
Confidence 78888988754444555443322211 11122334554433 33 45566678999888775432110
Q ss_pred ecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 436 LEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 436 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.....|+.+.+..+-.-++.-.+-|.+.|
T Consensus 193 --v~~k~vR~fk~~tQTEG~VaDdEtG~LYI 221 (364)
T COG4247 193 --VGTKLVRQFKIPTQTEGMVADDETGFLYI 221 (364)
T ss_pred --EcceeeEeeecCCcccceeeccccceEEE
Confidence 11223444444444444444444555555
No 492
>PRK13613 lipoprotein LpqB; Provisional
Probab=54.25 E-value=2.5e+02 Score=28.55 Aligned_cols=144 Identities=5% Similarity=-0.004 Sum_probs=74.0
Q ss_pred cEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCC----CeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEE
Q 010287 342 SISDIKFARNGRHILSRD-Y-MTLKLWDINMDSG----PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 415 (513)
Q Consensus 342 ~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 415 (513)
.+.+.+.++++..++... + ..+++..+..... ....+.+.. ++.-.|.+++ .+-+.
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~-----------------Lt~PS~d~~g-~vWtv 425 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGR-----------------LTSPSWDGRG-DLWVV 425 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCc-----------------ccCCcCcCCC-CEEEe
Confidence 577889999998888754 3 5666665532122 111122211 1255677776 34333
Q ss_pred eC--CC--cEEEEecCCCCccceeecCCC-CceeEEEEcCCCCceeeecC---CCeEEE----ecCCCCCccccCCcccc
Q 010287 416 SY--SN--LFRVFGCSEGSAESTTLEASK-NPMRRQVQTPSRPSRPLGSL---SGVVRR----VKGADNSALDANGNAFD 483 (513)
Q Consensus 416 ~~--dg--~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---d~~i~~----~~~~~~~~~~~~~~~~~ 483 (513)
.. ++ .+++..- ++........... ..|..+..++||--+|.-.. .+.+.+ ...............-.
T Consensus 426 d~~~~~~~vl~v~~~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~ 504 (599)
T PRK13613 426 DRDPADPRLLWLLQG-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAP 504 (599)
T ss_pred cCCCCCceEEEEEcC-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEecc
Confidence 21 22 2555543 3322111111222 37999999999987765433 356666 21111110000000101
Q ss_pred ccCCeeEEEEeCCCCEEEEEc
Q 010287 484 FSMKLLHLAWHPSENSIACAA 504 (513)
Q Consensus 484 ~~~~i~~~~~sp~~~~la~~~ 504 (513)
-...+.+++|..+..+++.+.
T Consensus 505 ~l~~v~~~~W~~~~sL~Vlg~ 525 (599)
T PRK13613 505 ELEDVTDMSWAGDSQLVVLGR 525 (599)
T ss_pred CCCccceeEEcCCCEEEEEec
Confidence 123499999999999877553
No 493
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=52.57 E-value=1.8e+02 Score=26.33 Aligned_cols=162 Identities=9% Similarity=0.100 Sum_probs=79.6
Q ss_pred EEEEcCCeEEEEEcCCCcc----eeeecccCccccccccCCe-EEEEEeC--CCCeEEEEEeCCCcEEEEEcCCcccccc
Q 010287 247 FISADDLRINLWNLEISNQ----SFNIVDVKPANMEDLTEVI-TSAEFHP--THCNMLAYSSSKGSIRLIDMRQSALCDT 319 (513)
Q Consensus 247 l~s~~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~i-~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 319 (513)
|.+++||+|.-|...-... ...+++ ......| ..+++.. .+..+.++--.+++|.+||-.-.....
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d------~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~- 176 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVD------ASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL- 176 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEc------cCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC-
Confidence 4444899999998543222 111111 0111223 3455543 342455555568999999864432210
Q ss_pred cceeeccccCC---CCccccccccc--cEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccc
Q 010287 320 HSKLFEEQEAP---GTRSFFTEIIA--SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE 393 (513)
Q Consensus 320 ~~~~~~~~~~~---~~~~~~~~~~~--~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (513)
.-.|..+..+ .+..+ ....+ .|+-..-.++.+.=+.|.. |.|.+||+. +..++++........
T Consensus 177 -~g~F~DP~iPagyAPFnI-qnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~--G~l~~r~as~g~LNa------- 245 (336)
T TIGR03118 177 -PGSFIDPALPAGYAPFNV-QNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN--GQLLRRVASSGRLNA------- 245 (336)
T ss_pred -CCCccCCCCCCCCCCcce-EEECCeEEEEEEecCCcccccccCCCcceEEEEcCC--CcEEEEeccCCcccC-------
Confidence 0112211111 01000 00000 1111112233333333444 899999987 888887743322211
Q ss_pred cCCccceeeEEEeC------CCCEEEEEeCCCcEEEEecCCCCcc
Q 010287 394 NDSIFDKFECCLSG------DGGRVATGSYSNLFRVFGCSEGSAE 432 (513)
Q Consensus 394 ~~~~~~v~~~~~s~------~~~~l~~~~~dg~i~vwd~~~~~~~ 432 (513)
-+.++..| .+.+|+---.||+|..||..++..+
T Consensus 246 ------PWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 246 ------PWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred ------CceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence 12555544 4566666567999999999888443
No 494
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=52.56 E-value=99 Score=32.59 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=36.4
Q ss_pred eeeEEEeCCCCEEEE-EeCCC-----cEEEEecCCCCccceeecCCCCceeEEEEcCCCC
Q 010287 400 KFECCLSGDGGRVAT-GSYSN-----LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 453 (513)
Q Consensus 400 v~~~~~s~~~~~l~~-~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 453 (513)
+....|||||+.|+- .+.++ .|++-++.+....+..+..-...|..-.+..+|.
T Consensus 352 i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~gd 411 (912)
T TIGR02171 352 VYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLENGD 411 (912)
T ss_pred eecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecCCCC
Confidence 447799999999986 44433 4888899876555555655555565655655554
No 495
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=52.49 E-value=26 Score=20.00 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=15.8
Q ss_pred CCCEEEEEeCCCcEEEEecCC
Q 010287 408 DGGRVATGSYSNLFRVFGCSE 428 (513)
Q Consensus 408 ~~~~l~~~~~dg~i~vwd~~~ 428 (513)
.+..++.++.||.++.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 355788899999999998763
No 496
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=52.10 E-value=1.6e+02 Score=25.69 Aligned_cols=122 Identities=14% Similarity=0.122 Sum_probs=60.3
Q ss_pred EEEeCCCCeEEEEEeC-C--CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--C
Q 010287 287 AEFHPTHCNMLAYSSS-K--GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M 361 (513)
Q Consensus 287 ~~~~~~~~~~l~~~~~-d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~ 361 (513)
-.+.++| +++.+|+. + ..+++++...... ...+..... ......+--+...-|||+.|+.|+. .
T Consensus 72 g~~L~dG-~ll~tGG~~~G~~~ir~~~p~~~~~----~~~w~e~~~------~m~~~RWYpT~~~L~DG~vlIvGG~~~~ 140 (243)
T PF07250_consen 72 GAFLPDG-RLLQTGGDNDGNKAIRIFTPCTSDG----TCDWTESPN------DMQSGRWYPTATTLPDGRVLIVGGSNNP 140 (243)
T ss_pred cCCCCCC-CEEEeCCCCccccceEEEecCCCCC----CCCceECcc------cccCCCccccceECCCCCEEEEeCcCCC
Confidence 3567898 88888876 3 3577777543000 000110000 0001123344555679999998764 5
Q ss_pred eEEEEEccCCCCCeeeeeccccc-ccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 362 TLKLWDINMDSGPVATFQVHEHL-RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 362 ~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
+..+|.-.........+...... ......+| + -+-..|+|++++.+..+. .|||..+.
T Consensus 141 t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlY------P--~~~llPdG~lFi~an~~s--~i~d~~~n 199 (243)
T PF07250_consen 141 TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLY------P--FVHLLPDGNLFIFANRGS--IIYDYKTN 199 (243)
T ss_pred cccccCCccCCCCceeeecchhhhccCccccC------c--eEEEcCCCCEEEEEcCCc--EEEeCCCC
Confidence 56666643211111111100000 00001111 1 466789999999888765 45787766
No 497
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=50.66 E-value=3.6e+02 Score=29.19 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=27.5
Q ss_pred cccEEEEEEcCCC------CEEEeecCCCcEEEEEeeC
Q 010287 35 VDIISAIEFDKSG------DHLATGDRGGRVVLFERTD 66 (513)
Q Consensus 35 ~~~V~~v~~sp~g------~~latg~~dg~i~iw~~~~ 66 (513)
+..|.|+++.+++ ++++.|+.|+.+++..+..
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p 619 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDP 619 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecC
Confidence 5788999998874 5799999999999999763
No 498
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=46.86 E-value=83 Score=22.14 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=24.1
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287 282 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 312 (513)
Q Consensus 282 ~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 312 (513)
...+.|.++|++..++++....+.|++|...
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 4467899999985666667778999999864
No 499
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=46.59 E-value=3.1e+02 Score=27.32 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=18.8
Q ss_pred ccCCeeEEEEeCCCCEEEEEcCCcEE
Q 010287 484 FSMKLLHLAWHPSENSIACAASNSLY 509 (513)
Q Consensus 484 ~~~~i~~~~~sp~~~~la~~~~~~~~ 509 (513)
.+++|.++-=.|+++ |-.++.+++.
T Consensus 417 ~ss~V~aived~dns-LWIGTs~Glv 441 (671)
T COG3292 417 PSSEVSAIVEDPDNS-LWIGTSGGLV 441 (671)
T ss_pred cccceeeeeecCCCC-EEEeccCCeE
Confidence 478899999999998 6666665553
No 500
>PRK13614 lipoprotein LpqB; Provisional
Probab=46.16 E-value=3.3e+02 Score=27.53 Aligned_cols=143 Identities=8% Similarity=-0.040 Sum_probs=75.5
Q ss_pred cEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC-
Q 010287 342 SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN- 419 (513)
Q Consensus 342 ~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg- 419 (513)
.+.+.+.++++..++...+ + -.+|-....+.....+.+.. ++.-.|.+++ ++-+.-.+.
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~-~~l~~~~~g~~~~~~~~g~~-----------------Lt~PS~d~~g-~vWtv~~g~~ 404 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSR-TTLYTVSPGQPARALTSGST-----------------LTRPSFSPQD-WVWTAGPGGN 404 (573)
T ss_pred cccceeecCCCceEEEecCCC-cEEEEecCCCcceeeecCCC-----------------ccCCcccCCC-CEEEeeCCCC
Confidence 5778899999999887654 4 23343332122222233222 1256788877 555544433
Q ss_pred -cEEEEecCCCCcc------ceeecCCC-CceeEEEEcCCCCceeee-cCCCe--EEE----ec-CCCCCccccCCcccc
Q 010287 420 -LFRVFGCSEGSAE------STTLEASK-NPMRRQVQTPSRPSRPLG-SLSGV--VRR----VK-GADNSALDANGNAFD 483 (513)
Q Consensus 420 -~i~vwd~~~~~~~------~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~d~~--i~~----~~-~~~~~~~~~~~~~~~ 483 (513)
.|..+.-...... ........ ..|..+.+|+||--++.- ..+|. |.+ +. .+.+... .......
T Consensus 405 ~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L-~~~~~~~ 483 (573)
T PRK13614 405 GRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPREL-TAPITLA 483 (573)
T ss_pred ceEEEEecCCCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEc-cCceecc
Confidence 4444443211010 11122222 349999999999876653 34555 666 21 1111110 1111112
Q ss_pred ccCCeeEEEEeCCCCEEEEEc
Q 010287 484 FSMKLLHLAWHPSENSIACAA 504 (513)
Q Consensus 484 ~~~~i~~~~~sp~~~~la~~~ 504 (513)
....+.+++|..++.+++.+.
T Consensus 484 ~~~~~~sl~W~~~~sl~V~~~ 504 (573)
T PRK13614 484 ADSDADTGAWVGDSTVVVTKA 504 (573)
T ss_pred cCCCcceeEEcCCCEEEEEec
Confidence 346889999999999877654
Done!