Query 010287
Match_columns 513
No_of_seqs 518 out of 1853
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 03:31:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010287.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010287hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dw8_B Serine/threonine-protei 100.0 1.8E-49 6E-54 384.0 40.7 440 10-513 5-444 (447)
2 1nr0_A Actin interacting prote 100.0 8.6E-48 2.9E-52 385.2 41.5 418 14-512 41-564 (611)
3 1nr0_A Actin interacting prote 100.0 3.1E-45 1.1E-49 366.7 42.3 397 30-513 142-609 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 1.6E-44 5.4E-49 360.9 39.8 359 30-512 216-577 (577)
5 2ymu_A WD-40 repeat protein; u 100.0 5.6E-44 1.9E-48 356.9 40.6 386 30-512 11-454 (577)
6 1vyh_C Platelet-activating fac 100.0 1.9E-43 6.4E-48 336.2 36.8 282 30-466 103-406 (410)
7 3ow8_A WD repeat-containing pr 100.0 2.4E-43 8.2E-48 323.7 35.8 284 30-466 27-316 (321)
8 2ynn_A Coatomer subunit beta'; 100.0 1.5E-42 5E-47 316.5 37.4 285 30-466 8-298 (304)
9 4gqb_B Methylosome protein 50; 100.0 1.1E-42 3.8E-47 321.5 33.9 295 32-466 27-326 (344)
10 1got_B GT-beta; complex (GTP-b 100.0 4.2E-42 1.5E-46 318.8 36.3 287 30-466 50-338 (340)
11 4g56_B MGC81050 protein; prote 100.0 2.7E-42 9.1E-47 321.7 31.7 301 13-466 27-338 (357)
12 3ow8_A WD repeat-containing pr 100.0 2.2E-41 7.5E-46 310.7 35.3 290 93-513 25-319 (321)
13 1vyh_C Platelet-activating fac 100.0 2.4E-41 8E-46 321.8 35.7 277 113-512 109-408 (410)
14 2oaj_A Protein SNI1; WD40 repe 100.0 8.6E-42 3E-46 353.6 34.5 392 31-512 13-658 (902)
15 2pbi_B Guanine nucleotide-bind 100.0 6.4E-41 2.2E-45 312.2 36.7 291 30-466 59-352 (354)
16 2ynn_A Coatomer subunit beta'; 100.0 6.7E-41 2.3E-45 305.6 35.1 287 92-512 5-299 (304)
17 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.3E-40 2.2E-44 304.7 37.8 305 31-466 11-330 (345)
18 1got_B GT-beta; complex (GTP-b 100.0 4.8E-40 1.6E-44 305.0 36.5 290 91-512 46-340 (340)
19 2pm9_A Protein WEB1, protein t 100.0 2.8E-41 9.4E-46 323.3 28.5 343 32-512 9-411 (416)
20 3sfz_A APAF-1, apoptotic pepti 100.0 4.4E-40 1.5E-44 357.3 40.1 403 13-512 638-1155(1249)
21 4ery_A WD repeat-containing pr 100.0 2E-39 7E-44 297.5 38.4 286 30-466 18-307 (312)
22 3frx_A Guanine nucleotide-bind 100.0 1.2E-39 4E-44 299.3 36.4 285 30-466 12-312 (319)
23 3iz6_a 40S ribosomal protein R 100.0 1.6E-40 5.6E-45 313.0 30.2 303 30-466 61-370 (380)
24 1r5m_A SIR4-interacting protei 100.0 1.6E-39 5.5E-44 311.9 35.6 338 30-512 40-422 (425)
25 1pgu_A Actin interacting prote 100.0 5.5E-39 1.9E-43 323.4 40.5 388 31-512 14-611 (615)
26 1erj_A Transcriptional repress 100.0 5.2E-39 1.8E-43 304.1 35.9 298 32-466 61-384 (393)
27 2xzm_R RACK1; ribosome, transl 100.0 3.8E-38 1.3E-42 292.7 40.6 291 30-466 16-335 (343)
28 4g56_B MGC81050 protein; prote 100.0 2E-39 6.8E-44 302.4 31.6 244 229-512 91-340 (357)
29 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.7E-38 6E-43 295.0 37.5 299 91-512 6-332 (345)
30 2pbi_B Guanine nucleotide-bind 100.0 1.3E-38 4.4E-43 296.7 36.0 292 92-512 56-354 (354)
31 3iz6_a 40S ribosomal protein R 100.0 2.6E-39 9E-44 304.7 31.6 302 90-512 56-372 (380)
32 3vl1_A 26S proteasome regulato 100.0 7E-39 2.4E-43 307.0 34.8 333 36-512 57-416 (420)
33 2hes_X YDR267CP; beta-propelle 100.0 1.4E-38 4.9E-43 293.6 34.3 296 30-466 9-323 (330)
34 3sfz_A APAF-1, apoptotic pepti 100.0 2.5E-38 8.4E-43 343.6 42.0 385 30-513 610-1072(1249)
35 4ery_A WD repeat-containing pr 100.0 6.3E-38 2.1E-42 287.6 36.9 293 87-513 10-310 (312)
36 4gqb_B Methylosome protein 50; 100.0 1.6E-38 5.6E-43 293.6 32.6 242 230-512 80-328 (344)
37 3frx_A Guanine nucleotide-bind 100.0 6E-38 2.1E-42 288.0 35.8 295 89-512 6-314 (319)
38 1gxr_A ESG1, transducin-like e 100.0 2.6E-38 8.8E-43 293.7 33.7 325 33-512 7-334 (337)
39 3mkq_A Coatomer beta'-subunit; 100.0 1.7E-37 5.9E-42 322.8 41.4 330 30-512 8-383 (814)
40 4e54_B DNA damage-binding prot 100.0 4.3E-38 1.5E-42 302.2 33.6 295 31-466 115-425 (435)
41 2j04_B YDR362CP, TAU91; beta p 100.0 8E-39 2.7E-43 310.2 27.2 340 32-512 130-514 (524)
42 4aow_A Guanine nucleotide-bind 100.0 2.4E-37 8.2E-42 287.5 35.8 303 30-430 33-339 (340)
43 2hes_X YDR267CP; beta-propelle 100.0 4.5E-37 1.5E-41 283.6 34.0 295 92-512 6-325 (330)
44 2xzm_R RACK1; ribosome, transl 100.0 1.7E-36 5.7E-41 281.6 37.9 300 90-512 11-337 (343)
45 2oaj_A Protein SNI1; WD40 repe 100.0 9.2E-38 3.1E-42 323.6 32.6 426 12-512 79-729 (902)
46 2pm7_B Protein transport prote 100.0 8.5E-37 2.9E-41 277.4 31.4 258 31-428 5-285 (297)
47 3dm0_A Maltose-binding peripla 100.0 1.9E-36 6.4E-41 308.3 36.6 289 30-466 377-688 (694)
48 3zwl_B Eukaryotic translation 100.0 1E-35 3.5E-40 279.8 37.6 289 29-466 26-341 (369)
49 1gxr_A ESG1, transducin-like e 100.0 1.5E-35 5.2E-40 275.0 37.8 285 30-466 46-332 (337)
50 2ovr_B FBW7, F-BOX/WD repeat p 100.0 8.2E-36 2.8E-40 287.6 37.2 311 30-512 113-439 (445)
51 1k8k_C P40, ARP2/3 complex 41 100.0 4.6E-36 1.6E-40 282.5 34.6 303 33-466 6-356 (372)
52 1erj_A Transcriptional repress 100.0 6.1E-36 2.1E-40 283.1 34.6 294 113-512 65-386 (393)
53 3bg1_A Protein SEC13 homolog; 100.0 8.1E-37 2.8E-41 280.0 26.8 258 31-428 9-293 (316)
54 3ei3_B DNA damage-binding prot 100.0 8.5E-36 2.9E-40 281.8 34.1 300 30-466 68-377 (383)
55 2pm9_A Protein WEB1, protein t 100.0 2.3E-36 7.7E-41 289.2 29.8 321 12-466 45-409 (416)
56 1sq9_A Antiviral protein SKI8; 100.0 1.4E-35 4.9E-40 281.7 33.5 299 30-466 11-390 (397)
57 3v7d_B Cell division control p 100.0 3.4E-35 1.2E-39 285.1 36.6 322 30-511 116-458 (464)
58 3k26_A Polycomb protein EED; W 100.0 3E-35 1E-39 276.3 34.2 317 32-466 15-361 (366)
59 4a11_B DNA excision repair pro 100.0 6.9E-35 2.4E-39 278.1 37.2 314 30-466 38-360 (408)
60 3dwl_C Actin-related protein 2 100.0 1.3E-36 4.5E-41 286.8 24.5 300 34-466 10-374 (377)
61 3i2n_A WD repeat-containing pr 100.0 1.3E-35 4.6E-40 277.7 30.6 288 31-466 14-348 (357)
62 4h5i_A Guanine nucleotide-exch 100.0 8.1E-36 2.8E-40 278.7 27.9 196 230-466 131-338 (365)
63 2j04_A TAU60, YPL007P, hypothe 100.0 7.6E-36 2.6E-40 281.3 27.7 300 34-504 14-349 (588)
64 3gre_A Serine/threonine-protei 100.0 4.2E-35 1.4E-39 282.2 33.4 347 32-512 60-437 (437)
65 3mkq_A Coatomer beta'-subunit; 100.0 4.8E-35 1.7E-39 304.4 35.8 383 13-512 36-457 (814)
66 1pgu_A Actin interacting prote 100.0 4.1E-35 1.4E-39 295.2 33.6 346 29-466 57-609 (615)
67 3jrp_A Fusion protein of prote 100.0 4E-35 1.4E-39 276.8 31.5 259 30-429 6-288 (379)
68 4aow_A Guanine nucleotide-bind 100.0 2.4E-34 8.1E-39 267.3 34.7 295 91-512 29-334 (340)
69 1r5m_A SIR4-interacting protei 100.0 8.2E-35 2.8E-39 279.1 31.9 291 34-466 107-420 (425)
70 4gga_A P55CDC, cell division c 100.0 7.5E-34 2.6E-38 271.5 37.6 277 37-466 107-390 (420)
71 1yfq_A Cell cycle arrest prote 100.0 1.4E-34 4.8E-39 269.1 31.7 287 33-466 9-319 (342)
72 3zwl_B Eukaryotic translation 100.0 8.4E-34 2.9E-38 266.7 37.1 294 94-512 26-343 (369)
73 4e54_B DNA damage-binding prot 100.0 6.2E-35 2.1E-39 280.2 28.3 281 113-512 120-427 (435)
74 3ei3_B DNA damage-binding prot 100.0 7.9E-34 2.7E-38 268.3 35.0 290 90-513 63-380 (383)
75 1sq9_A Antiviral protein SKI8; 100.0 2.7E-34 9.4E-39 272.9 31.4 305 92-512 8-392 (397)
76 3dm0_A Maltose-binding peripla 100.0 2.7E-34 9.3E-39 292.4 33.3 284 113-512 383-690 (694)
77 1k8k_C P40, ARP2/3 complex 41 100.0 1.4E-33 4.7E-38 265.6 35.6 288 113-512 9-358 (372)
78 3odt_A Protein DOA1; ubiquitin 100.0 1.3E-33 4.4E-38 259.1 34.0 276 30-466 13-291 (313)
79 3k26_A Polycomb protein EED; W 100.0 2.3E-34 8E-39 270.2 29.2 298 113-512 19-363 (366)
80 3odt_A Protein DOA1; ubiquitin 100.0 5.3E-33 1.8E-37 255.0 35.8 283 89-512 7-293 (313)
81 2pm7_B Protein transport prote 100.0 4.1E-33 1.4E-37 253.1 32.7 241 113-466 10-280 (297)
82 3vl1_A 26S proteasome regulato 100.0 8.7E-33 3E-37 264.6 36.3 282 36-466 98-414 (420)
83 4ggc_A P55CDC, cell division c 100.0 1.8E-32 6E-37 252.1 36.9 277 37-466 27-310 (318)
84 3jro_A Fusion protein of prote 100.0 2.3E-34 8E-39 294.2 26.8 260 30-430 4-287 (753)
85 3dwl_C Actin-related protein 2 100.0 1.7E-34 5.9E-39 272.3 23.7 243 113-466 12-277 (377)
86 4aez_A CDC20, WD repeat-contai 100.0 2.3E-33 7.7E-38 266.5 30.9 276 33-466 89-375 (401)
87 3bg1_A Protein SEC13 homolog; 100.0 7.4E-34 2.5E-38 260.4 26.3 243 113-466 14-288 (316)
88 3f3f_A Nucleoporin SEH1; struc 100.0 5.7E-33 2E-37 258.8 31.7 273 31-431 7-340 (351)
89 3i2n_A WD repeat-containing pr 100.0 5.5E-33 1.9E-37 259.9 31.2 246 230-512 63-350 (357)
90 3mmy_A MRNA export factor; mRN 100.0 1.7E-32 5.8E-37 257.7 33.3 295 30-466 34-341 (368)
91 4h5i_A Guanine nucleotide-exch 100.0 1.6E-33 5.5E-38 263.1 25.8 245 229-512 70-340 (365)
92 1p22_A F-BOX/WD-repeat protein 100.0 1.5E-32 5E-37 263.9 32.9 269 33-466 131-409 (435)
93 4aez_A CDC20, WD repeat-contai 100.0 9.6E-33 3.3E-37 262.2 31.1 263 14-433 115-385 (401)
94 2j04_B YDR362CP, TAU91; beta p 100.0 5.7E-34 2E-38 276.2 22.8 293 32-466 204-512 (524)
95 3v7d_B Cell division control p 100.0 3.8E-32 1.3E-36 263.6 34.1 314 13-466 143-458 (464)
96 1yfq_A Cell cycle arrest prote 100.0 5.6E-32 1.9E-36 251.5 32.1 271 113-508 12-315 (342)
97 4gga_A P55CDC, cell division c 100.0 8.5E-32 2.9E-36 257.3 32.8 248 31-429 143-396 (420)
98 3lrv_A PRE-mRNA-splicing facto 100.0 4.9E-32 1.7E-36 251.6 27.8 280 41-466 42-328 (343)
99 2aq5_A Coronin-1A; WD40 repeat 100.0 8.4E-32 2.9E-36 256.0 30.0 288 37-466 36-337 (402)
100 4a11_B DNA excision repair pro 100.0 1.4E-31 4.7E-36 255.2 31.0 308 113-512 44-362 (408)
101 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9.3E-31 3.2E-35 252.3 35.7 284 13-463 140-430 (445)
102 3mmy_A MRNA export factor; mRN 100.0 1.7E-30 5.9E-35 244.0 33.3 282 92-506 31-336 (368)
103 3f3f_A Nucleoporin SEH1; struc 100.0 4.3E-31 1.5E-35 246.1 28.9 304 113-512 12-334 (351)
104 4gq1_A NUP37; propeller, trans 100.0 5.8E-31 2E-35 248.7 27.7 229 228-466 132-385 (393)
105 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.3E-30 1.8E-34 247.1 34.2 248 113-460 103-374 (450)
106 3jrp_A Fusion protein of prote 100.0 2.9E-30 9.8E-35 243.5 30.7 249 94-466 5-282 (379)
107 3vu4_A KMHSV2; beta-propeller 100.0 6.3E-30 2.2E-34 238.1 32.2 288 31-466 15-331 (355)
108 2xyi_A Probable histone-bindin 100.0 5.4E-30 1.8E-34 245.4 32.5 265 106-466 122-405 (430)
109 2xyi_A Probable histone-bindin 100.0 1.6E-30 5.6E-35 249.0 28.1 270 29-429 122-411 (430)
110 2aq5_A Coronin-1A; WD40 repeat 100.0 6.2E-31 2.1E-35 250.0 25.1 252 228-512 77-339 (402)
111 1p22_A F-BOX/WD-repeat protein 100.0 1.1E-29 3.8E-34 243.9 32.3 266 113-512 134-411 (435)
112 4ggc_A P55CDC, cell division c 100.0 2.7E-29 9.3E-34 230.8 33.0 238 229-513 64-313 (318)
113 4gq1_A NUP37; propeller, trans 100.0 1.2E-30 4.2E-35 246.5 23.9 258 230-512 87-386 (393)
114 3gre_A Serine/threonine-protei 100.0 3.6E-30 1.2E-34 247.7 26.8 317 13-466 87-435 (437)
115 2j04_A TAU60, YPL007P, hypothe 100.0 2.3E-30 7.8E-35 244.2 24.3 229 229-512 49-294 (588)
116 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.7E-28 6E-33 236.5 34.7 238 229-504 99-373 (450)
117 3dw8_B Serine/threonine-protei 100.0 6E-29 2E-33 240.0 29.6 274 111-466 27-368 (447)
118 3bws_A Protein LP49; two-domai 100.0 3.6E-28 1.2E-32 233.5 32.7 279 113-512 123-429 (433)
119 3jro_A Fusion protein of prote 100.0 8.9E-29 3E-33 253.0 28.5 248 95-466 4-280 (753)
120 3lrv_A PRE-mRNA-splicing facto 100.0 5.1E-28 1.8E-32 224.5 25.4 230 235-510 79-328 (343)
121 3vu4_A KMHSV2; beta-propeller 100.0 1.1E-26 3.6E-31 216.3 33.8 227 235-512 61-333 (355)
122 3bws_A Protein LP49; two-domai 100.0 6.1E-27 2.1E-31 225.0 32.6 280 33-466 120-427 (433)
123 2w18_A PALB2, fancn, partner a 100.0 2.1E-26 7.3E-31 203.9 28.7 194 230-466 134-352 (356)
124 1l0q_A Surface layer protein; 100.0 1.6E-25 5.3E-30 212.1 33.3 259 48-466 3-270 (391)
125 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.3E-26 4.4E-31 220.1 25.6 219 229-498 175-410 (415)
126 1l0q_A Surface layer protein; 100.0 2.1E-25 7.1E-30 211.2 33.4 269 12-443 12-289 (391)
127 1nir_A Nitrite reductase; hemo 100.0 2.5E-25 8.7E-30 217.5 34.4 327 42-513 144-512 (543)
128 1k32_A Tricorn protease; prote 99.9 1.1E-25 3.8E-30 238.9 30.1 388 30-505 47-491 (1045)
129 2ecf_A Dipeptidyl peptidase IV 99.9 3.4E-25 1.2E-29 227.6 32.8 326 35-504 36-443 (741)
130 2w18_A PALB2, fancn, partner a 99.9 1.5E-24 5E-29 192.2 28.3 215 231-512 110-354 (356)
131 1xfd_A DIP, dipeptidyl aminope 99.9 2E-24 6.7E-29 221.4 29.5 336 36-504 17-428 (723)
132 1k32_A Tricorn protease; prote 99.9 6E-24 2.1E-28 225.6 30.1 383 34-512 13-458 (1045)
133 2hqs_A Protein TOLB; TOLB, PAL 99.9 7.8E-24 2.7E-28 201.0 25.9 262 30-453 112-410 (415)
134 1nir_A Nitrite reductase; hemo 99.9 1.5E-22 5.1E-27 197.9 31.8 290 38-466 181-509 (543)
135 2z3z_A Dipeptidyl aminopeptida 99.9 1.1E-22 3.6E-27 207.9 29.4 248 233-512 121-432 (706)
136 3vgz_A Uncharacterized protein 99.9 3.2E-21 1.1E-25 179.6 31.3 283 33-461 38-334 (353)
137 2ojh_A Uncharacterized protein 99.9 6.4E-22 2.2E-26 179.4 24.6 233 230-505 39-291 (297)
138 1ri6_A Putative isomerase YBHE 99.9 3.7E-21 1.3E-25 178.4 29.8 237 234-499 85-336 (343)
139 2ojh_A Uncharacterized protein 99.9 8.8E-22 3E-26 178.5 24.4 258 52-461 17-292 (297)
140 3u4y_A Uncharacterized protein 99.9 1.3E-20 4.5E-25 173.8 31.6 273 41-466 3-299 (331)
141 2ecf_A Dipeptidyl peptidase IV 99.9 4E-21 1.4E-25 197.4 28.7 310 113-512 37-410 (741)
142 1z68_A Fibroblast activation p 99.9 2.4E-21 8E-26 198.3 26.2 328 40-503 20-427 (719)
143 1ri6_A Putative isomerase YBHE 99.9 4.4E-20 1.5E-24 171.1 30.4 302 12-451 15-333 (343)
144 2z3z_A Dipeptidyl aminopeptida 99.9 1.1E-20 3.8E-25 192.9 27.9 292 36-466 82-430 (706)
145 1xfd_A DIP, dipeptidyl aminope 99.9 2.3E-20 7.9E-25 191.2 26.8 295 37-458 62-427 (723)
146 3hfq_A Uncharacterized protein 99.9 1.9E-19 6.6E-24 167.1 29.5 269 30-427 34-316 (347)
147 3u4y_A Uncharacterized protein 99.9 1.5E-19 5E-24 166.8 28.3 239 235-512 43-301 (331)
148 3o4h_A Acylamino-acid-releasin 99.9 3.6E-20 1.2E-24 184.6 24.0 269 34-463 20-304 (582)
149 1pby_B Quinohemoprotein amine 99.9 4.9E-20 1.7E-24 170.3 23.0 233 235-512 36-307 (337)
150 3vgz_A Uncharacterized protein 99.9 5.6E-19 1.9E-23 164.4 30.0 233 235-504 91-332 (353)
151 2oit_A Nucleoporin 214KDA; NH2 99.9 1.1E-18 3.9E-23 165.9 31.2 229 32-369 89-332 (434)
152 4a5s_A Dipeptidyl peptidase 4 99.9 1.7E-18 5.8E-23 177.1 34.7 335 37-504 18-434 (740)
153 3hfq_A Uncharacterized protein 99.9 1.4E-18 4.8E-23 161.3 31.2 213 231-466 84-312 (347)
154 3o4h_A Acylamino-acid-releasin 99.9 1.8E-19 6E-24 179.6 26.4 258 113-505 22-301 (582)
155 2oit_A Nucleoporin 214KDA; NH2 99.9 3E-19 1E-23 169.9 26.3 230 34-370 35-278 (434)
156 3scy_A Hypothetical bacterial 99.8 2.3E-17 7.9E-22 153.9 36.6 206 234-466 101-332 (361)
157 1pby_B Quinohemoprotein amine 99.8 2.8E-19 9.7E-24 165.2 23.2 272 48-430 2-312 (337)
158 3scy_A Hypothetical bacterial 99.8 1.5E-17 5.2E-22 155.2 33.1 289 34-449 48-360 (361)
159 1jmx_B Amine dehydrogenase; ox 99.8 1.5E-18 5E-23 161.3 22.1 252 40-429 4-326 (349)
160 3pe7_A Oligogalacturonate lyas 99.8 4.9E-18 1.7E-22 160.2 24.4 273 41-466 41-377 (388)
161 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.9E-16 1E-20 146.5 32.0 268 113-429 40-342 (365)
162 1jmx_B Amine dehydrogenase; ox 99.8 4.4E-17 1.5E-21 151.3 23.6 248 235-512 45-322 (349)
163 1z68_A Fibroblast activation p 99.8 4.1E-17 1.4E-21 166.9 23.7 282 37-457 61-426 (719)
164 3azo_A Aminopeptidase; POP fam 99.7 4.5E-16 1.6E-20 157.6 27.1 203 231-466 128-362 (662)
165 4a5s_A Dipeptidyl peptidase 4 99.7 6.4E-16 2.2E-20 158.0 28.1 204 236-466 65-346 (740)
166 1q7f_A NHL, brain tumor CG1071 99.7 6.7E-15 2.3E-19 132.4 31.6 272 10-429 6-281 (286)
167 3pe7_A Oligogalacturonate lyas 99.7 3.1E-16 1.1E-20 147.9 23.3 230 235-511 83-378 (388)
168 3c5m_A Oligogalacturonate lyas 99.7 7.9E-16 2.7E-20 145.5 20.9 293 34-466 34-377 (396)
169 2oiz_A Aromatic amine dehydrog 99.7 1.6E-14 5.6E-19 133.9 29.1 230 235-498 110-360 (361)
170 1qks_A Cytochrome CD1 nitrite 99.7 3.3E-13 1.1E-17 131.5 36.4 324 44-512 164-535 (567)
171 1jof_A Carboxy-CIS,CIS-muconat 99.7 8.5E-15 2.9E-19 136.5 24.2 251 174-466 42-336 (365)
172 2dg1_A DRP35, lactonase; beta 99.7 2.2E-14 7.7E-19 132.0 25.8 276 36-461 6-300 (333)
173 3fvz_A Peptidyl-glycine alpha- 99.7 5E-14 1.7E-18 129.2 27.2 260 36-428 24-322 (329)
174 1q7f_A NHL, brain tumor CG1071 99.7 2E-13 6.7E-18 122.7 28.9 242 230-512 27-277 (286)
175 3azo_A Aminopeptidase; POP fam 99.7 2.2E-14 7.6E-19 145.2 25.0 184 241-466 87-318 (662)
176 3fvz_A Peptidyl-glycine alpha- 99.6 1.4E-13 4.7E-18 126.3 27.4 235 203-466 67-317 (329)
177 2oiz_A Aromatic amine dehydrog 99.6 1.9E-13 6.4E-18 126.8 28.1 278 40-453 54-360 (361)
178 3e5z_A Putative gluconolactona 99.6 2.3E-13 8E-18 122.9 24.8 241 33-429 25-287 (296)
179 2z2n_A Virginiamycin B lyase; 99.6 6.9E-12 2.4E-16 113.3 34.6 277 34-466 13-291 (299)
180 3e5z_A Putative gluconolactona 99.6 4.8E-13 1.6E-17 120.8 25.6 236 230-512 25-283 (296)
181 3c5m_A Oligogalacturonate lyas 99.6 3.2E-14 1.1E-18 134.4 18.4 218 238-504 86-369 (396)
182 2dg1_A DRP35, lactonase; beta 99.6 3.3E-12 1.1E-16 117.4 30.5 237 229-506 41-300 (333)
183 2bkl_A Prolyl endopeptidase; m 99.6 2.1E-13 7.3E-18 138.4 24.1 251 33-430 118-399 (695)
184 2z2n_A Virginiamycin B lyase; 99.6 2.7E-11 9.4E-16 109.3 35.6 233 233-512 57-292 (299)
185 2gop_A Trilobed protease; beta 99.6 1.3E-12 4.4E-17 120.9 26.1 172 235-463 106-322 (347)
186 2xdw_A Prolyl endopeptidase; a 99.6 7.2E-13 2.5E-17 134.9 26.2 163 231-430 231-416 (710)
187 2xdw_A Prolyl endopeptidase; a 99.6 2E-12 6.9E-17 131.6 28.4 239 231-512 123-411 (710)
188 2gop_A Trilobed protease; beta 99.6 1E-12 3.4E-17 121.7 24.0 215 235-511 61-327 (347)
189 1rwi_B Serine/threonine-protei 99.5 5.9E-12 2E-16 111.9 26.7 238 37-429 25-265 (270)
190 2bkl_A Prolyl endopeptidase; m 99.5 1.4E-12 4.7E-17 132.4 24.3 238 230-512 118-394 (695)
191 1qks_A Cytochrome CD1 nitrite 99.5 4E-11 1.4E-15 116.9 32.6 295 34-466 195-533 (567)
192 3no2_A Uncharacterized protein 99.5 1.4E-11 4.9E-16 109.1 26.3 184 234-458 38-230 (276)
193 2qc5_A Streptogramin B lactona 99.5 1.8E-10 6.1E-15 104.0 33.4 270 35-459 19-290 (300)
194 1rwi_B Serine/threonine-protei 99.5 3.8E-11 1.3E-15 106.7 26.7 233 234-512 25-261 (270)
195 3dsm_A Uncharacterized protein 99.5 4.8E-11 1.6E-15 109.1 26.8 231 235-512 46-299 (328)
196 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 5.6E-11 1.9E-15 108.1 26.8 159 234-429 118-300 (314)
197 2qc5_A Streptogramin B lactona 99.5 8.1E-10 2.8E-14 99.6 34.1 233 234-512 63-297 (300)
198 1yr2_A Prolyl oligopeptidase; 99.4 2.7E-11 9.2E-16 123.8 25.0 234 233-512 163-438 (741)
199 3dsm_A Uncharacterized protein 99.4 3.6E-11 1.2E-15 109.9 23.2 249 36-437 44-309 (328)
200 1yr2_A Prolyl oligopeptidase; 99.4 1.4E-11 4.8E-16 125.9 22.7 159 234-430 269-443 (741)
201 3no2_A Uncharacterized protein 99.4 1.4E-10 4.7E-15 102.8 24.7 225 46-416 4-231 (276)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 4.9E-10 1.7E-14 101.9 26.9 195 233-466 71-294 (314)
203 3g4e_A Regucalcin; six bladed 99.3 1.1E-09 3.7E-14 98.6 27.0 234 36-417 13-261 (297)
204 3sjl_D Methylamine dehydrogena 99.3 4.6E-10 1.6E-14 102.5 24.4 220 235-496 139-384 (386)
205 3iuj_A Prolyl endopeptidase; h 99.3 5E-10 1.7E-14 113.4 24.5 159 232-430 233-407 (693)
206 3hrp_A Uncharacterized protein 99.3 3.5E-09 1.2E-13 99.5 27.6 268 36-426 131-408 (409)
207 3g4e_A Regucalcin; six bladed 99.3 2.1E-09 7.3E-14 96.7 25.0 188 233-458 54-259 (297)
208 2mad_H Methylamine dehydrogena 99.3 2.3E-08 7.8E-13 92.6 32.2 257 117-432 70-354 (373)
209 1xip_A Nucleoporin NUP159; bet 99.3 1.9E-10 6.4E-15 105.5 17.3 189 36-357 38-230 (388)
210 2ghs_A AGR_C_1268P; regucalcin 99.3 8.4E-09 2.9E-13 94.0 28.0 229 37-417 50-291 (326)
211 2qe8_A Uncharacterized protein 99.3 1.4E-09 4.7E-14 100.1 22.8 271 36-462 17-312 (343)
212 3dr2_A Exported gluconolactona 99.2 2.2E-09 7.7E-14 97.0 23.7 234 31-419 40-298 (305)
213 3hrp_A Uncharacterized protein 99.2 1.1E-08 3.9E-13 96.1 28.9 206 238-466 176-405 (409)
214 3dr2_A Exported gluconolactona 99.2 4E-09 1.4E-13 95.3 24.7 231 232-512 44-303 (305)
215 1xip_A Nucleoporin NUP159; bet 99.2 3.2E-10 1.1E-14 104.0 16.7 179 234-457 39-230 (388)
216 3sjl_D Methylamine dehydrogena 99.2 1.1E-09 3.6E-14 100.1 19.9 264 40-384 82-376 (386)
217 2ghs_A AGR_C_1268P; regucalcin 99.2 1.3E-08 4.3E-13 92.9 26.4 186 234-458 91-289 (326)
218 2mad_H Methylamine dehydrogena 99.2 4.3E-08 1.5E-12 90.8 29.2 293 123-466 29-345 (373)
219 3c75_H MADH, methylamine dehyd 99.2 7.6E-09 2.6E-13 96.3 23.5 260 117-436 122-409 (426)
220 3iuj_A Prolyl endopeptidase; h 99.1 2.5E-09 8.6E-14 108.2 20.2 237 230-512 126-402 (693)
221 2ece_A 462AA long hypothetical 99.1 1.2E-07 4.2E-12 87.1 25.4 168 237-416 192-399 (462)
222 2qe8_A Uncharacterized protein 99.0 7.8E-08 2.7E-12 88.3 24.0 254 233-504 17-309 (343)
223 3c75_H MADH, methylamine dehyd 99.0 1.8E-08 6.2E-13 93.8 19.2 258 40-378 122-409 (426)
224 1kb0_A Quinohemoprotein alcoho 99.0 1E-07 3.4E-12 95.7 24.5 191 236-455 246-534 (677)
225 2ece_A 462AA long hypothetical 99.0 2.6E-07 8.8E-12 85.0 24.7 233 242-504 93-399 (462)
226 1mda_H Methylamine dehydrogena 98.9 2.4E-07 8.2E-12 84.8 21.7 257 117-441 69-358 (368)
227 1yiq_A Quinohemoprotein alcoho 98.9 7.6E-07 2.6E-11 89.5 26.2 199 237-455 239-532 (689)
228 2hz6_A Endoplasmic reticulum t 98.9 1.5E-09 5.1E-14 100.7 5.3 144 242-431 47-195 (369)
229 4a2l_A BT_4663, two-component 98.8 0.00011 3.7E-09 75.8 40.8 255 233-512 263-523 (795)
230 3q7m_A Lipoprotein YFGL, BAMB; 98.8 4.4E-06 1.5E-10 77.8 27.3 182 246-466 145-332 (376)
231 1npe_A Nidogen, entactin; glyc 98.8 2E-05 6.9E-10 69.3 29.0 175 234-452 80-262 (267)
232 4a2l_A BT_4663, two-component 98.7 0.00042 1.4E-08 71.3 42.0 250 233-512 310-568 (795)
233 3hxj_A Pyrrolo-quinoline quino 98.7 1.3E-06 4.3E-11 79.8 19.8 181 235-466 139-319 (330)
234 1fwx_A Nitrous oxide reductase 98.7 7E-07 2.4E-11 85.3 17.5 101 342-459 278-406 (595)
235 1mda_H Methylamine dehydrogena 98.7 6.6E-07 2.3E-11 81.9 15.9 255 40-384 69-359 (368)
236 1yiq_A Quinohemoprotein alcoho 98.6 7.2E-06 2.5E-10 82.4 23.2 337 126-501 70-533 (689)
237 3hxj_A Pyrrolo-quinoline quino 98.6 2.3E-06 8E-11 77.9 17.7 210 244-510 107-319 (330)
238 1kb0_A Quinohemoprotein alcoho 98.6 1.3E-05 4.5E-10 80.4 23.6 337 127-501 78-535 (677)
239 2iwa_A Glutamine cyclotransfer 98.5 1.5E-05 5E-10 68.8 20.1 190 283-511 22-233 (266)
240 2fp8_A Strictosidine synthase; 98.5 3.9E-05 1.3E-09 69.5 24.2 157 235-429 128-314 (322)
241 2iwa_A Glutamine cyclotransfer 98.5 7.3E-05 2.5E-09 64.5 24.2 194 233-466 21-232 (266)
242 3q7m_A Lipoprotein YFGL, BAMB; 98.5 3.3E-05 1.1E-09 71.7 24.2 179 245-466 189-373 (376)
243 3qqz_A Putative uncharacterize 98.5 0.00026 8.7E-09 60.7 26.7 176 235-427 72-252 (255)
244 1kv9_A Type II quinohemoprotei 98.5 4.5E-05 1.6E-09 76.4 25.2 173 237-432 234-492 (668)
245 3v9f_A Two-component system se 98.5 0.0016 5.3E-08 67.0 37.2 256 232-512 257-521 (781)
246 3nol_A Glutamine cyclotransfer 98.5 2.4E-05 8.3E-10 66.6 18.9 183 233-457 43-241 (262)
247 2p4o_A Hypothetical protein; p 98.5 0.00072 2.4E-08 60.6 30.1 192 235-459 74-276 (306)
248 2hz6_A Endoplasmic reticulum t 98.4 6.4E-08 2.2E-12 89.7 3.1 175 243-466 8-187 (369)
249 3nol_A Glutamine cyclotransfer 98.4 4.2E-05 1.5E-09 65.1 19.9 187 284-510 45-249 (262)
250 3nok_A Glutaminyl cyclase; bet 98.4 7.4E-05 2.5E-09 63.6 20.1 184 232-458 54-253 (268)
251 1npe_A Nidogen, entactin; glyc 98.3 0.00085 2.9E-08 58.7 27.1 118 235-380 124-247 (267)
252 3v65_B Low-density lipoprotein 98.3 0.0019 6.4E-08 59.9 30.1 156 235-431 161-321 (386)
253 2p4o_A Hypothetical protein; p 98.3 0.00045 1.5E-08 61.9 25.1 234 233-504 32-276 (306)
254 3mbr_X Glutamine cyclotransfer 98.3 0.00029 1E-08 59.5 21.1 193 224-458 12-222 (243)
255 3v64_C Agrin; beta propeller, 98.3 0.0025 8.6E-08 58.1 31.0 156 235-431 118-278 (349)
256 3mbr_X Glutamine cyclotransfer 98.2 0.00054 1.8E-08 57.8 21.8 185 282-506 21-224 (243)
257 3v9f_A Two-component system se 98.2 0.0075 2.6E-07 61.9 38.8 244 233-512 313-565 (781)
258 2ad6_A Methanol dehydrogenase 98.2 0.00033 1.1E-08 68.6 23.5 55 361-432 444-498 (571)
259 2fp8_A Strictosidine synthase; 98.2 0.0005 1.7E-08 62.2 23.1 193 235-460 21-248 (322)
260 1fwx_A Nitrous oxide reductase 98.2 0.00014 4.8E-09 69.6 19.7 188 291-512 99-358 (595)
261 3nok_A Glutaminyl cyclase; bet 98.2 0.00013 4.6E-09 62.1 17.3 182 284-506 57-255 (268)
262 1k3i_A Galactose oxidase precu 98.1 0.00017 5.8E-09 72.4 20.2 59 402-460 460-530 (656)
263 2xe4_A Oligopeptidase B; hydro 98.1 0.0036 1.2E-07 63.7 29.3 72 235-313 273-354 (751)
264 1flg_A Protein (quinoprotein e 98.1 0.0018 6.3E-08 63.5 26.1 65 253-318 291-360 (582)
265 3qqz_A Putative uncharacterize 98.1 0.004 1.4E-07 53.4 24.8 214 276-512 21-250 (255)
266 2ad6_A Methanol dehydrogenase 98.1 0.002 6.7E-08 63.2 25.7 28 126-153 115-142 (571)
267 1k3i_A Galactose oxidase precu 98.1 0.0012 4.3E-08 66.1 24.9 209 235-461 245-476 (656)
268 2xe4_A Oligopeptidase B; hydro 98.1 0.0002 6.8E-09 73.0 18.7 113 234-370 175-304 (751)
269 1w6s_A Methanol dehydrogenase 98.0 0.0071 2.4E-07 59.3 26.9 75 237-318 245-347 (599)
270 3kya_A Putative phosphatase; s 97.9 0.0098 3.3E-07 56.2 25.7 216 234-466 187-470 (496)
271 4hw6_A Hypothetical protein, I 97.9 0.011 3.7E-07 55.6 25.5 207 234-466 183-428 (433)
272 3v65_B Low-density lipoprotein 97.8 0.019 6.5E-07 53.1 27.5 191 234-466 117-313 (386)
273 3tc9_A Hypothetical hydrolase; 97.8 0.012 4.1E-07 55.4 25.0 71 235-312 228-300 (430)
274 3tc9_A Hypothetical hydrolase; 97.8 0.018 6.3E-07 54.1 26.2 111 234-369 180-300 (430)
275 3sre_A PON1, serum paraoxonase 97.8 0.0046 1.6E-07 55.9 20.9 196 235-459 52-285 (355)
276 1ijq_A LDL receptor, low-densi 97.8 0.018 6.1E-07 51.6 31.5 158 235-431 79-241 (316)
277 4hw6_A Hypothetical protein, I 97.8 0.028 9.6E-07 52.8 27.1 182 235-427 230-432 (433)
278 1kv9_A Type II quinohemoprotei 97.8 0.0031 1.1E-07 63.1 21.2 62 303-382 437-499 (668)
279 2xbg_A YCF48-like protein; pho 97.7 0.023 7.9E-07 51.2 30.8 232 234-511 81-318 (327)
280 3ei3_A DNA damage-binding prot 97.7 0.073 2.5E-06 56.5 35.7 101 408-512 895-996 (1158)
281 1w6s_A Methanol dehydrogenase 97.7 0.022 7.5E-07 55.8 25.3 85 286-379 245-350 (599)
282 3m0c_C LDL receptor, low-densi 97.5 0.097 3.3E-06 53.1 31.2 159 234-432 472-636 (791)
283 3p5b_L Low density lipoprotein 97.5 0.058 2E-06 50.1 31.6 159 234-432 160-324 (400)
284 3v64_C Agrin; beta propeller, 97.5 0.057 1.9E-06 49.1 29.9 191 234-466 74-270 (349)
285 2p9w_A MAL S 1 allergenic prot 97.5 0.051 1.7E-06 48.1 25.5 212 235-466 15-260 (334)
286 2ism_A Putative oxidoreductase 97.4 0.065 2.2E-06 48.8 24.9 113 234-358 32-152 (352)
287 2p9w_A MAL S 1 allergenic prot 97.3 0.042 1.4E-06 48.6 19.8 173 280-466 11-210 (334)
288 1ijq_A LDL receptor, low-densi 97.2 0.11 3.6E-06 46.6 29.9 192 234-466 31-233 (316)
289 1n7d_A LDL receptor, low-densi 97.2 0.0034 1.2E-07 63.1 13.3 157 235-430 455-616 (699)
290 3a9g_A Putative uncharacterize 97.2 0.12 4.1E-06 47.0 23.3 112 233-357 29-151 (354)
291 1flg_A Protein (quinoprotein e 97.2 0.066 2.3E-06 52.4 22.0 63 303-383 465-528 (582)
292 3m0c_C LDL receptor, low-densi 97.2 0.26 8.9E-06 50.0 26.5 183 246-466 397-584 (791)
293 2xbg_A YCF48-like protein; pho 97.1 0.13 4.6E-06 46.1 30.2 236 233-509 36-273 (327)
294 3sov_A LRP-6, low-density lipo 97.1 0.14 4.9E-06 45.7 28.7 156 235-431 81-241 (318)
295 3amr_A 3-phytase; beta-propell 97.1 0.15 5.3E-06 45.5 22.7 149 252-427 98-262 (355)
296 3sov_A LRP-6, low-density lipo 97.0 0.17 5.7E-06 45.2 24.5 191 235-466 37-233 (318)
297 3pbp_A Nucleoporin NUP82; beta 97.0 0.14 4.7E-06 46.9 19.9 164 240-424 28-208 (452)
298 3p5b_L Low density lipoprotein 97.0 0.24 8.3E-06 45.9 28.1 184 245-466 84-272 (400)
299 3s94_A LRP-6, low-density lipo 96.8 0.48 1.6E-05 46.8 40.4 202 35-314 39-244 (619)
300 3kya_A Putative phosphatase; s 96.7 0.17 5.9E-06 47.8 18.8 155 283-466 140-336 (496)
301 1n7d_A LDL receptor, low-densi 96.5 0.019 6.6E-07 57.6 12.0 182 247-466 380-566 (699)
302 4a0p_A LRP6, LRP-6, low-densit 96.4 0.84 2.9E-05 45.1 32.4 153 235-430 82-239 (628)
303 3pbp_A Nucleoporin NUP82; beta 96.4 0.53 1.8E-05 43.1 19.2 116 342-466 67-207 (452)
304 3s94_A LRP-6, low-density lipo 96.4 0.86 2.9E-05 44.9 22.7 158 233-429 40-203 (619)
305 2ism_A Putative oxidoreductase 96.3 0.61 2.1E-05 42.3 24.0 56 402-458 272-332 (352)
306 4a0p_A LRP6, LRP-6, low-densit 96.3 1 3.4E-05 44.5 39.8 198 36-314 37-238 (628)
307 2xzh_A Clathrin heavy chain 1; 96.0 0.74 2.5E-05 40.5 26.7 165 234-429 153-333 (365)
308 3a9g_A Putative uncharacterize 95.8 1 3.5E-05 40.8 24.9 58 401-458 262-329 (354)
309 1tl2_A L10, protein (tachylect 95.7 0.16 5.5E-06 41.8 11.5 146 342-503 42-199 (236)
310 2xzh_A Clathrin heavy chain 1; 95.7 1 3.5E-05 39.7 25.0 201 235-464 109-325 (365)
311 2g8s_A Glucose/sorbosone dehyd 95.5 1.4 4.8E-05 39.9 27.5 118 233-358 18-147 (353)
312 3sre_A PON1, serum paraoxonase 95.5 1.4 4.7E-05 39.8 23.0 73 281-368 220-296 (355)
313 2g8s_A Glucose/sorbosone dehyd 95.3 1.6 5.3E-05 39.6 27.6 29 36-64 18-46 (353)
314 1tl2_A L10, protein (tachylect 95.2 0.6 2.1E-05 38.4 13.2 158 283-466 42-205 (236)
315 1bpo_A Protein (clathrin); cla 95.2 1.9 6.5E-05 39.7 29.3 166 233-429 151-332 (494)
316 1cru_A Protein (soluble quinop 95.0 1.4 4.9E-05 41.4 17.5 117 233-359 27-162 (454)
317 3das_A Putative oxidoreductase 94.8 2.1 7.2E-05 38.4 26.3 119 226-359 196-326 (347)
318 3amr_A 3-phytase; beta-propell 94.6 2.4 8.3E-05 37.8 23.6 129 235-379 130-272 (355)
319 3s25_A Hypothetical 7-bladed b 94.4 2.4 8.2E-05 37.3 19.2 124 346-503 109-240 (302)
320 1bpo_A Protein (clathrin); cla 94.1 3.5 0.00012 37.9 28.8 194 245-464 117-324 (494)
321 3das_A Putative oxidoreductase 94.0 3.2 0.00011 37.2 27.5 116 233-358 32-157 (347)
322 1cru_A Protein (soluble quinop 93.7 3.7 0.00013 38.6 17.1 67 282-357 27-96 (454)
323 2vpj_A Kelch-like protein 12; 93.6 3.4 0.00012 36.1 19.6 23 292-315 159-186 (301)
324 3s25_A Hypothetical 7-bladed b 92.9 4.5 0.00015 35.5 20.2 135 239-428 110-255 (302)
325 1xi4_A Clathrin heavy chain; a 92.0 16 0.00053 39.6 20.2 130 234-379 152-297 (1630)
326 1xi4_A Clathrin heavy chain; a 91.2 19 0.00065 39.0 24.1 178 246-449 118-309 (1630)
327 3sbq_A Nitrous-oxide reductase 90.2 6.2 0.00021 37.6 13.5 113 342-466 324-463 (638)
328 3ei3_A DNA damage-binding prot 89.2 26 0.00089 37.4 29.8 77 233-316 554-641 (1158)
329 3q6k_A 43.2 kDa salivary prote 89.0 13 0.00045 33.7 20.0 160 254-428 124-306 (381)
330 2vpj_A Kelch-like protein 12; 88.9 11 0.00038 32.7 20.2 22 408-429 206-232 (301)
331 2xn4_A Kelch-like protein 2; s 87.6 14 0.00046 32.2 20.4 22 408-429 251-277 (302)
332 3ii7_A Kelch-like protein 7; p 87.0 15 0.0005 32.0 21.5 22 408-429 247-273 (306)
333 3sbq_A Nitrous-oxide reductase 85.9 11 0.00039 35.9 12.4 79 233-313 323-408 (638)
334 3ott_A Two-component system se 85.9 32 0.0011 34.8 35.5 251 233-512 279-542 (758)
335 3ii7_A Kelch-like protein 7; p 85.4 18 0.00061 31.5 20.3 23 292-315 101-129 (306)
336 3ott_A Two-component system se 85.0 35 0.0012 34.5 37.7 242 234-512 147-398 (758)
337 2be1_A Serine/threonine-protei 84.4 22 0.00075 31.7 14.5 25 245-269 112-137 (339)
338 2wg3_C Hedgehog-interacting pr 84.2 28 0.00095 32.7 30.4 119 233-360 14-158 (463)
339 2xn4_A Kelch-like protein 2; s 82.3 24 0.00082 30.6 19.7 22 408-429 204-230 (302)
340 4asc_A Kelch repeat and BTB do 82.1 25 0.00086 30.7 18.4 22 408-429 196-222 (315)
341 1zgk_A Kelch-like ECH-associat 81.6 26 0.00089 30.5 18.7 22 408-429 215-241 (308)
342 3f7f_A Nucleoporin NUP120; nuc 79.6 18 0.00061 35.8 11.5 38 113-154 222-259 (729)
343 2uvk_A YJHT; unknown function, 77.0 40 0.0014 30.0 21.4 28 405-432 313-346 (357)
344 2be1_A Serine/threonine-protei 74.6 27 0.00093 31.1 10.6 107 295-431 11-133 (339)
345 1zgk_A Kelch-like ECH-associat 73.2 46 0.0016 28.9 22.3 23 292-315 168-195 (308)
346 2uvk_A YJHT; unknown function, 61.3 88 0.003 27.7 14.8 12 304-315 168-179 (357)
347 4gq2_M Nucleoporin NUP120; bet 59.0 71 0.0024 33.3 11.5 39 114-154 237-275 (950)
348 2wg3_C Hedgehog-interacting pr 58.6 1.2E+02 0.0041 28.4 12.9 28 342-369 15-44 (463)
349 2zwa_A Leucine carboxyl methyl 57.2 1.6E+02 0.0054 29.3 19.7 23 292-315 500-524 (695)
350 4gq2_M Nucleoporin NUP120; bet 55.4 65 0.0022 33.6 10.5 32 400-431 238-269 (950)
351 2woz_A Kelch repeat and BTB do 51.6 1.2E+02 0.0041 26.3 19.5 22 408-429 206-232 (318)
352 4hvt_A Ritya.17583.B, post-pro 50.7 2E+02 0.0069 28.7 21.6 192 236-466 132-374 (711)
353 3q6k_A 43.2 kDa salivary prote 50.3 1.5E+02 0.005 26.9 19.6 74 233-313 220-306 (381)
354 4asc_A Kelch repeat and BTB do 49.4 1.3E+02 0.0044 26.0 16.5 54 407-462 147-207 (315)
355 4fhn_B Nucleoporin NUP120; pro 44.9 49 0.0017 35.4 7.8 31 401-431 241-271 (1139)
356 2loj_A Putative cytoplasmic pr 44.4 43 0.0015 20.9 4.2 38 14-52 25-62 (63)
357 3f7f_A Nucleoporin NUP120; nuc 42.0 88 0.003 31.1 8.3 25 406-430 228-252 (729)
358 3zwu_A Alkaline phosphatase PH 36.8 86 0.0029 30.4 7.4 60 283-358 477-548 (592)
359 4a9v_A PHOX; hydrolase, beta-p 35.7 1.4E+02 0.0049 28.7 8.5 61 341-416 476-549 (592)
360 4fhn_B Nucleoporin NUP120; pro 34.5 35 0.0012 36.5 4.8 40 114-155 239-278 (1139)
361 1zi0_A DNA gyrase subunit A; b 33.7 2.4E+02 0.0081 24.5 19.7 99 408-507 108-217 (307)
362 3qhy_B Beta-lactamase inhibito 33.6 2.2E+02 0.0076 24.2 23.8 218 234-511 25-242 (282)
363 3b7f_A Glycosyl hydrolase, BNR 32.4 2.8E+02 0.0094 24.9 21.6 167 341-511 55-258 (394)
364 2woz_A Kelch repeat and BTB do 31.8 2.5E+02 0.0084 24.2 21.5 23 292-315 158-186 (318)
365 3l6v_A GYRA, DNA gyrase subuni 31.4 2.9E+02 0.0099 24.8 19.8 121 291-428 5-132 (370)
366 1wp5_A Topoisomerase IV; broke 30.4 2.8E+02 0.0095 24.3 21.2 156 291-466 3-169 (323)
367 2zwa_A Leucine carboxyl methyl 29.6 4.3E+02 0.015 26.2 13.5 112 292-430 451-579 (695)
368 3zwu_A Alkaline phosphatase PH 29.1 1.5E+02 0.0053 28.7 7.7 56 402-458 480-548 (592)
369 3b7f_A Glycosyl hydrolase, BNR 25.2 3.7E+02 0.013 24.0 12.5 99 410-510 23-142 (394)
370 4a9v_A PHOX; hydrolase, beta-p 24.5 3.4E+02 0.012 26.2 8.9 60 398-458 476-548 (592)
No 1
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.8e-49 Score=383.96 Aligned_cols=440 Identities=55% Similarity=0.913 Sum_probs=324.1
Q ss_pred cccccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCc
Q 010287 10 AAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE 89 (513)
Q Consensus 10 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (513)
+...+..|++.|+|++. .+++.|.+.|++++|+|+|++||+|+.||.|+||++.+.+... .....+
T Consensus 5 ~~~~~~~w~~~q~~~~~--~~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~------------~~~~~~ 70 (447)
T 3dw8_B 5 GGGNDIQWCFSQVKGAV--DDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQ------------SHSRGE 70 (447)
T ss_dssp ---CCCCCEEEECCSCS--SSCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----------------CCCCCC
T ss_pred CCCcceeEEEEEecccc--cccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCC------------cccccc
Confidence 34678999999999974 4568899999999999999999999999999999988765210 011235
Q ss_pred ceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCccc
Q 010287 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (513)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (513)
+.+...+.+|.+++.++.++.++..|++++|+|..+...|++++.|++|++||+.++...... .....
T Consensus 71 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~-~~~~~----------- 138 (447)
T 3dw8_B 71 YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEG-YNLKE----------- 138 (447)
T ss_dssp EEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEEC-CSCC------------
T ss_pred eeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcce-ecccC-----------
Confidence 566778899999999999999999999999977443368999999999999999876643211 00000
Q ss_pred CcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEE
Q 010287 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 249 (513)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 249 (513)
.+|.. ........+.+..+...+......+.+.+..+|...|.+++|+|++++|++
T Consensus 139 -----------~~g~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 194 (447)
T 3dw8_B 139 -----------EDGRY-------------RDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLS 194 (447)
T ss_dssp -------------------------------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEE
T ss_pred -----------ccccc-------------cCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEE
Confidence 00100 000111112222222222222334445556789999999999999999999
Q ss_pred EcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccC
Q 010287 250 ADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 329 (513)
Q Consensus 250 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 329 (513)
|.|+.|++||+++......++..++..+.+|...|.+++|+|+++.+|++++.||.|++||++++.........+..+..
T Consensus 195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 274 (447)
T 3dw8_B 195 ADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPED 274 (447)
T ss_dssp ECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC--
T ss_pred eCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCC
Confidence 99999999999966666665555666678999999999999997689999999999999999998765555667777665
Q ss_pred CCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC
Q 010287 330 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 409 (513)
Q Consensus 330 ~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 409 (513)
+.....+.+|...|.+++|+|++++|++++++.|++||++..++++..+..|......++..+..+++++++.++|+|++
T Consensus 275 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~ 354 (447)
T 3dw8_B 275 PSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD 354 (447)
T ss_dssp ---CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS
T ss_pred ccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCC
Confidence 55555667777899999999999999998779999999986578888999988776666677777777777789999999
Q ss_pred CEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCee
Q 010287 410 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLL 489 (513)
Q Consensus 410 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~ 489 (513)
++|++|+.||.|++||+.++.. ..++.+..+.......+.......+.. ..........++...|.
T Consensus 355 ~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~i~ 420 (447)
T 3dw8_B 355 SVVMTGSYNNFFRMFDRNTKRD--ITLEASRENNKPRTVLKPRKVCASGKR------------KKDEISVDSLDFNKKIL 420 (447)
T ss_dssp SEEEEECSTTEEEEEETTTCCE--EEEECCSTTCCTTCBCCCCCEECSSCC------------CTTCEEGGGCCTTSCCC
T ss_pred CEEEEeccCCEEEEEEcCCCcc--eeeeecccccccccccCCccccccCCc------------ccccccccccccCCcee
Confidence 9999999999999999997733 356666655543333333322222211 11122233445788999
Q ss_pred EEEEeCCCCEEEEEcCCcEEEEeC
Q 010287 490 HLAWHPSENSIACAASNSLYMYYA 513 (513)
Q Consensus 490 ~~~~sp~~~~la~~~~~~~~i~~~ 513 (513)
+++|||++++||+++.+++++|++
T Consensus 421 ~~~~~p~~~~la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 421 HTAWHPKENIIAVATTNNLYIFQD 444 (447)
T ss_dssp EEEECSSSSEEEEECSSCEEEEEC
T ss_pred EEEECCCCCEEEEEecceeeeecc
Confidence 999999999999999999999985
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.6e-48 Score=385.21 Aligned_cols=418 Identities=14% Similarity=0.148 Sum_probs=296.1
Q ss_pred cccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEe
Q 010287 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (513)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (513)
...|++.. + .....+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.. ..
T Consensus 41 v~l~~~~~--~-~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~---------------------~~ 96 (611)
T 1nr0_A 41 VYTVPVGS--L-TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI---------------------LK 96 (611)
T ss_dssp EEEEETTC--S-SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC---------------------EE
T ss_pred EEEecCCC--c-ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce---------------------ee
Confidence 34566643 1 122345689999999999999999999999999999998654321 33
Q ss_pred ccccCCCCcccccccccccccceeEEEeecCCCceEEEeecC----CeEEEEEccCceeeeeeccccCCCcccCCCCccc
Q 010287 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTND----KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (513)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d----~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (513)
..+.+|. ..|.+++|+| ++.+|++++.+ +.|++||. ++....+. .+.
T Consensus 97 ~~~~~~~------------~~v~~v~fs~--dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~--gh~----------- 147 (611)
T 1nr0_A 97 TTIPVFS------------GPVKDISWDS--ESKRIAAVGEGRERFGHVFLFDT--GTSNGNLT--GQA----------- 147 (611)
T ss_dssp EEEECSS------------SCEEEEEECT--TSCEEEEEECCSSCSEEEEETTT--CCBCBCCC--CCS-----------
T ss_pred EeecccC------------CceEEEEECC--CCCEEEEEECCCCceeEEEEeeC--CCCcceec--CCC-----------
Confidence 4567787 8899999955 78899988765 47888874 33222211 111
Q ss_pred CcccccCceeccCCCc-cccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEE
Q 010287 170 SHVSAIPKSYMANGGC-GERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 248 (513)
Q Consensus 170 ~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 248 (513)
.....++|+|++.. + ++++.++.+++|+....+ +.. .+.+|...|.+++|+|++++|+
T Consensus 148 --~~v~~v~f~p~~~~~l------------~s~s~D~~v~lwd~~~~~------~~~-~l~~H~~~V~~v~fspdg~~la 206 (611)
T 1nr0_A 148 --RAMNSVDFKPSRPFRI------------ISGSDDNTVAIFEGPPFK------FKS-TFGEHTKFVHSVRYNPDGSLFA 206 (611)
T ss_dssp --SCEEEEEECSSSSCEE------------EEEETTSCEEEEETTTBE------EEE-EECCCSSCEEEEEECTTSSEEE
T ss_pred --CCceEEEECCCCCeEE------------EEEeCCCeEEEEECCCCe------Eee-eeccccCceEEEEECCCCCEEE
Confidence 22337788998863 4 788899999999975422 222 2578999999999999999999
Q ss_pred EE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccc-------
Q 010287 249 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH------- 320 (513)
Q Consensus 249 s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~------- 320 (513)
++ .|++|++||+.+++....+.. ......+|...|.+++|+|++ .+|++++.|+.|++||+++++.....
T Consensus 207 s~s~D~~i~lwd~~~g~~~~~~~~-~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~ 284 (611)
T 1nr0_A 207 STGGDGTIVLYNGVDGTKTGVFED-DSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIE 284 (611)
T ss_dssp EEETTSCEEEEETTTCCEEEECBC-TTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGG
T ss_pred EEECCCcEEEEECCCCcEeeeecc-ccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCcc
Confidence 98 799999999987664432210 001123799999999999999 99999999999999999887642210
Q ss_pred ---------------------ceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeee
Q 010287 321 ---------------------SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATF 378 (513)
Q Consensus 321 ---------------------~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~ 378 (513)
++.++.. .......+.+|...|.+++|+|++++|++++. +.|++||+.+ +.....+
T Consensus 285 ~~~~~~~~~~~~l~s~s~d~~i~~~~~~-~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~-~~~~~~~ 362 (611)
T 1nr0_A 285 DQQLGIIWTKQALVSISANGFINFVNPE-LGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVF 362 (611)
T ss_dssp GCEEEEEECSSCEEEEETTCCEEEEETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEECS
T ss_pred ceeEEEEEcCCEEEEEeCCCcEEEEeCC-CCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-Cceeeec
Confidence 0001100 00112235689999999999999999999875 9999999985 4333222
Q ss_pred -ecccccccccc-------------------------------------------cccccC-------------------
Q 010287 379 -QVHEHLRPKLC-------------------------------------------DLYEND------------------- 395 (513)
Q Consensus 379 -~~~~~~~~~~~-------------------------------------------~~~~~~------------------- 395 (513)
..|...+..+. .+....
T Consensus 363 ~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~ 442 (611)
T 1nr0_A 363 PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 442 (611)
T ss_dssp SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE
T ss_pred ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCce
Confidence 11111000000 000000
Q ss_pred ----CccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCC
Q 010287 396 ----SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD 471 (513)
Q Consensus 396 ----~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~ 471 (513)
.-..+.+++|+|||++|++|+.|+.|++||+.++........+|...|.+++|+|++++|++++.|+.|++ |+
T Consensus 443 ~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~---w~ 519 (611)
T 1nr0_A 443 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIP---YS 519 (611)
T ss_dssp EEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEE---EE
T ss_pred eeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEE---EE
Confidence 01235689999999999999999999999998653222223689999999999999999999999999999 33
Q ss_pred CCc-cccCCc-cc-cccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 472 NSA-LDANGN-AF-DFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 472 ~~~-~~~~~~-~~-~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
... .+.... .. .|...|.+++|+||+++||+++ ++.+++|+
T Consensus 520 ~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 520 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp GGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence 221 111111 22 3899999999999999999888 77899996
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.1e-45 Score=366.68 Aligned_cols=397 Identities=14% Similarity=0.165 Sum_probs=290.7
Q ss_pred ccccccccEEEEEEcCCCC-EEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (513)
...+|.+.|++++|+|++. +|++|+.|++|++||..+.+ +...+.+|.
T Consensus 142 ~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-----------------------~~~~l~~H~-------- 190 (611)
T 1nr0_A 142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-----------------------FKSTFGEHT-------- 190 (611)
T ss_dssp CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-----------------------EEEEECCCS--------
T ss_pred eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-----------------------Eeeeecccc--------
Confidence 4568999999999999987 69999999999999965433 445678898
Q ss_pred ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (513)
Q Consensus 109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 188 (513)
..|++++|+| ++.+|++++.|++|++||+.+++........... .. ........++|+|+|+.+
T Consensus 191 ----~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~-~~-------~h~~~V~~v~~spdg~~l-- 254 (611)
T 1nr0_A 191 ----KFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK-NV-------AHSGSVFGLTWSPDGTKI-- 254 (611)
T ss_dssp ----SCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS-SC-------SSSSCEEEEEECTTSSEE--
T ss_pred ----CceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeecccccc-cc-------ccCCCEEEEEECCCCCEE--
Confidence 8899999965 7889999999999999999988765543210000 00 001223478899999987
Q ss_pred ccCCCCCCCCcCCCCCCceeceeeccCCccccc------------------------------------ceeeEeecccc
Q 010287 189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVA------------------------------------GCRRIYAHAHD 232 (513)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------------------------------------~~~~~~~~~h~ 232 (513)
++++.++.+++||+...+..... ......+.+|.
T Consensus 255 ----------~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~ 324 (611)
T 1nr0_A 255 ----------ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHN 324 (611)
T ss_dssp ----------EEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCS
T ss_pred ----------EEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCC
Confidence 88889999999998654322110 00112346899
Q ss_pred CCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287 233 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 311 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~ 311 (513)
..|.+++|+|++++|+++ .|++|++||+.++..... ...+|...|.+++|++++ .+++++.|+.+++|++
T Consensus 325 ~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~-------~~~~h~~~v~~~~~s~~~--~l~s~s~d~~v~~w~~ 395 (611)
T 1nr0_A 325 KAITALSSSADGKTLFSADAEGHINSWDISTGISNRV-------FPDVHATMITGIKTTSKG--DLFTVSWDDHLKVVPA 395 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC-------SSCSCSSCEEEEEECTTS--CEEEEETTTEEEEECS
T ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee-------cccCCcceEEEEEECCCC--cEEEEEcCCceEEeec
Confidence 999999999999999998 799999999987654321 125688999999999875 6889999999999998
Q ss_pred CCcccccccc---------eeeccccCC---------------CCccccccccccEEEEEEeecCCEEEEEeC-CeEEEE
Q 010287 312 RQSALCDTHS---------KLFEEQEAP---------------GTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLW 366 (513)
Q Consensus 312 ~~~~~~~~~~---------~~~~~~~~~---------------~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iw 366 (513)
..+....... ..+....+. ........|...+.+++|+|||++|++|+. +.|++|
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lw 475 (611)
T 1nr0_A 396 GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY 475 (611)
T ss_dssp SSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred CCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEE
Confidence 7654211000 000000000 000001125567899999999999999885 999999
Q ss_pred EccCCCCC--eeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccce--eecCCCCc
Q 010287 367 DINMDSGP--VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAEST--TLEASKNP 442 (513)
Q Consensus 367 d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~~~ 442 (513)
|+.. +.. +.. ..|... |++++|+|||++|++++.|+.|++|++.+..+... .+..|...
T Consensus 476 d~~~-~~~~~~~~-~~h~~~---------------v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~ 538 (611)
T 1nr0_A 476 KLSG-ASVSEVKT-IVHPAE---------------ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAK 538 (611)
T ss_dssp EEET-TEEEEEEE-EECSSC---------------EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSC
T ss_pred EccC-Cceeeeec-cCCCCc---------------eEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccc
Confidence 9984 322 122 344443 56999999999999999999999999987323333 24459999
Q ss_pred eeEEEEcCCCCceeeecCCCeEEEecCCCCCccc-cC-Cccccc-cCCeeEEEEeCCCCEEEEEc-CCcEEEEeC
Q 010287 443 MRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALD-AN-GNAFDF-SMKLLHLAWHPSENSIACAA-SNSLYMYYA 513 (513)
Q Consensus 443 v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~-~~-~~~~~~-~~~i~~~~~sp~~~~la~~~-~~~~~i~~~ 513 (513)
|.+++|+|++++||+|+.|+.|++ |+..... .. .....| ...|.+++|+|+++ |++++ ++.+++|+.
T Consensus 539 V~~v~fspdg~~lasgs~D~~v~l---W~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 539 VACVSWSPDNVRLATGSLDNSVIV---WNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEE---EETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred eeEEEECCCCCEEEEEECCCcEEE---EECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 999999999999999999999999 4433211 11 123357 78999999999998 77665 788999973
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.6e-44 Score=360.92 Aligned_cols=359 Identities=18% Similarity=0.282 Sum_probs=290.4
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
....|...|++++|+|++++|++++.|+.|++|+.... ....+.+|.
T Consensus 216 ~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~------------------------~~~~~~~~~--------- 262 (577)
T 2ymu_A 216 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ------------------------LLQTLTGHS--------- 262 (577)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC------------------------EEEEECCCS---------
T ss_pred EEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCC------------------------EEEEEecCC---------
Confidence 34578999999999999999999999999999995322 234567787
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
..|++++|+| ++..+++++.|+.|++|+..... ......+. .....++++|++..+
T Consensus 263 ---~~v~~v~~~~--d~~~l~~~~~d~~i~~w~~~~~~-~~~~~~h~---------------~~v~~~~~~~~~~~l--- 318 (577)
T 2ymu_A 263 ---SSVNGVAFRP--DGQTIASASDDKTVKLWNRNGQL-LQTLTGHS---------------SSVWGVAFSPDGQTI--- 318 (577)
T ss_dssp ---SCEEEEEECT--TSSEEEEEETTSCEEEEETTSCE-EEEECCCS---------------SCEEEEEECTTSSEE---
T ss_pred ---CCEEEEEEcC--CCCEEEEEeCCCEEEEEeCCCcE-EEEEecCC---------------CCeEEEEECCCCCEE---
Confidence 8899999955 78899999999999999976543 22222111 122357888999877
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~ 268 (513)
++++.++.+++|++..... ..+.+|...|.+++|+|++++|+++ .|+.|++||.. ++ ...
T Consensus 319 ---------~t~~~d~~i~~w~~~~~~~--------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~-~~~ 379 (577)
T 2ymu_A 319 ---------ASASDDKTVKLWNRNGQHL--------QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQ-LLQ 379 (577)
T ss_dssp ---------EEEETTSCEEEEETTSCEE--------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CC-EEE
T ss_pred ---------EEEeCCCeEEEEeCCCCee--------EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CC-EEE
Confidence 7788899999999754321 1246889999999999999999998 79999999965 33 222
Q ss_pred ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 348 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 348 (513)
.+.+|...|.+++|+|++ ++|++++.|+.|++||.. ++. ... +.+|...|.+++|
T Consensus 380 -------~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~-~~~----~~~------------~~~~~~~v~~~~~ 434 (577)
T 2ymu_A 380 -------TLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQL----LQT------------LTGHSSSVWGVAF 434 (577)
T ss_dssp -------EEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTT-CCE----EEE------------EECCSSCEEEEEE
T ss_pred -------EecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCC-CCE----EEE------------ecCCCCCeEEEEE
Confidence 457789999999999999 899999999999999953 332 222 3456688999999
Q ss_pred eecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287 349 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 427 (513)
Q Consensus 349 sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 427 (513)
+|++++|++++. +.|++||.. ++.+..+.+|... |++++|+|++++|++++.|+.|++||..
T Consensus 435 s~d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~---------------v~~~~~spd~~~las~~~d~~i~iw~~~ 497 (577)
T 2ymu_A 435 SPDDQTIASASDDKTVKLWNRN--GQLLQTLTGHSSS---------------VRGVAFSPDGQTIASASDDKTVKLWNRN 497 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEETT--SCEEEEEECCSSC---------------EEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred CCCCCEEEEEcCCCEEEEEECC--CCEEEEEcCCCCC---------------EEEEEEcCCCCEEEEEeCCCEEEEEcCC
Confidence 999999999875 999999975 6777888877765 5589999999999999999999999964
Q ss_pred CCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CC
Q 010287 428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SN 506 (513)
Q Consensus 428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~ 506 (513)
+ +....+.+|..+|.+++|+|++++|++++.|+.|++ |+..+ +......+|...|++++|+||+++|++++ |+
T Consensus 498 -~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~l---wd~~~-~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~ 571 (577)
T 2ymu_A 498 -G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL---WNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASSDK 571 (577)
T ss_dssp -S-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE---ECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred -C-CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEE---EeCCC-CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 3 556788999999999999999999999999999999 44321 23334557999999999999999999887 66
Q ss_pred cEEEEe
Q 010287 507 SLYMYY 512 (513)
Q Consensus 507 ~~~i~~ 512 (513)
.+++|+
T Consensus 572 ~i~~Wd 577 (577)
T 2ymu_A 572 TVKLWN 577 (577)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 788985
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5.6e-44 Score=356.94 Aligned_cols=386 Identities=17% Similarity=0.266 Sum_probs=282.9
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
...+|++.|+|++|||||++||+|+.|+.|+|||.. ++ ....+.+|.
T Consensus 11 ~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~-~~-----------------------~~~~l~gh~--------- 57 (577)
T 2ymu_A 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ-----------------------LLQTLTGHS--------- 57 (577)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SC-----------------------EEEEEECCS---------
T ss_pred EECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECC-CC-----------------------EEEEEeCCC---------
Confidence 356899999999999999999999999999999953 22 335678898
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCC---------CcccCCCCccc-----------
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHP---------EKAAGNGPIFG----------- 169 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~----------- 169 (513)
..|++++|+| ++++|++++.|++|++||+.. +.......+..+ +..++.+....
T Consensus 58 ---~~V~~l~fsp--dg~~las~~~d~~i~vWd~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~ 131 (577)
T 2ymu_A 58 ---SSVWGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL 131 (577)
T ss_dssp ---SCEEEEEECT--TSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE
T ss_pred ---CCEEEEEECC--CCCEEEEEeCCCEEEEEECCC-CEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce
Confidence 8899999955 888999999999999999754 333322221111 00000000000
Q ss_pred ------CcccccCceeccCCCccccc-----------------------------cCCCCCCCCcCCCCCCceeceeecc
Q 010287 170 ------SHVSAIPKSYMANGGCGERN-----------------------------FGCASNDSSFPPGGVSSLRLPVVTS 214 (513)
Q Consensus 170 ------~~~~~~~~~~~~~g~~~~~~-----------------------------~~~~~~~~~~~~~~~~~i~~~~~~~ 214 (513)
.........++|++..+... .......+.++++.++.+++|+...
T Consensus 132 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~ 211 (577)
T 2ymu_A 132 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 211 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred eeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCC
Confidence 00000011222222211100 0011223445667788888887532
Q ss_pred CCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCC
Q 010287 215 QETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH 293 (513)
Q Consensus 215 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 293 (513)
.... .+.+|...|.+++|+|++++|+++ .|+.|++||.. ++ ... .+.+|...|.+++|+|++
T Consensus 212 -------~~~~-~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~-~~~-------~~~~~~~~v~~v~~~~d~ 274 (577)
T 2ymu_A 212 -------QLLQ-TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ-LLQ-------TLTGHSSSVNGVAFRPDG 274 (577)
T ss_dssp -------CEEE-EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SC-EEE-------EECCCSSCEEEEEECTTS
T ss_pred -------cEEE-EEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CC-EEE-------EEecCCCCEEEEEEcCCC
Confidence 1122 246899999999999999999998 79999999975 22 222 457899999999999998
Q ss_pred CeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCC
Q 010287 294 CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDS 372 (513)
Q Consensus 294 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~ 372 (513)
..+++++.|+.|++||... +. ... +.+|...|.+++|+|++++|++++. +.|++||+. +
T Consensus 275 -~~l~~~~~d~~i~~w~~~~-~~----~~~------------~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~--~ 334 (577)
T 2ymu_A 275 -QTIASASDDKTVKLWNRNG-QL----LQT------------LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--G 334 (577)
T ss_dssp -SEEEEEETTSCEEEEETTS-CE----EEE------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT--S
T ss_pred -CEEEEEeCCCEEEEEeCCC-cE----EEE------------EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC--C
Confidence 8999999999999999643 22 222 3456688999999999999999875 999999986 5
Q ss_pred CCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCC
Q 010287 373 GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR 452 (513)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 452 (513)
..+..+..|... +.+++|+|++++|++++.|+.|++|+.. + .....+.+|..++.+++|+|++
T Consensus 335 ~~~~~~~~~~~~---------------v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~-~~~~~~~~~~~~v~~~~~s~dg 397 (577)
T 2ymu_A 335 QHLQTLTGHSSS---------------VWGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVRGVAFSPDG 397 (577)
T ss_dssp CEEEEECCCSSC---------------EEEEEECTTSSEEEEEETTSEEEEEETT-C-CEEEEEECCSSCEEEEEECTTS
T ss_pred CeeEEEeCCCCC---------------EEEEEECCCCCEEEEEeCCCEEEEEcCC-C-CEEEEecCCCCCeEEEEECCCC
Confidence 566666666554 4589999999999999999999999965 3 4567888999999999999999
Q ss_pred CceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 453 PSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 453 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
++|++++.|+.|++ |+... +.......|...|++++|+||+++|++++ ++.+.+|+
T Consensus 398 ~~l~~~~~d~~v~~---~~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~ 454 (577)
T 2ymu_A 398 QTIASASDDKTVKL---WNRNG-QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454 (577)
T ss_dssp SCEEEEETTSEEEE---ECTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CEEEEEeCCCEEEE---EeCCC-CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 99999999999999 33221 22233456899999999999999999887 55678875
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.9e-43 Score=336.23 Aligned_cols=282 Identities=17% Similarity=0.255 Sum_probs=245.2
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
...+|.++|++++|+|++.+||+|+.||+|+|||+.+++. ...+.+|.
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~-----------------------~~~l~~h~--------- 150 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-----------------------ERTLKGHT--------- 150 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC-----------------------CEEECCCS---------
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----------------------EEEEeccC---------
Confidence 4568999999999999999999999999999999877663 25678888
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
+.|.+++|+| ++.+|++++.|++|++||+.++++...
T Consensus 151 ---~~V~~v~~~~--~~~~l~sgs~D~~i~iwd~~~~~~~~~-------------------------------------- 187 (410)
T 1vyh_C 151 ---DSVQDISFDH--SGKLLASCSADMTIKLWDFQGFECIRT-------------------------------------- 187 (410)
T ss_dssp ---SCEEEEEECT--TSSEEEEEETTSCCCEEETTSSCEEEC--------------------------------------
T ss_pred ---CcEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCceeEE--------------------------------------
Confidence 8899999955 778999999999999999987654321
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~ 268 (513)
+.+|...|.+++|+|++++|++| .|++|++||++++....
T Consensus 188 --------------------------------------~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~- 228 (410)
T 1vyh_C 188 --------------------------------------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK- 228 (410)
T ss_dssp --------------------------------------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-
T ss_pred --------------------------------------EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-
Confidence 35788889999999999999998 79999999999766432
Q ss_pred ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 348 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 348 (513)
.+.+|...|.++.++|++ .+|++++.|+.|++||++++.. ... +.+|...|.+++|
T Consensus 229 -------~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~----~~~------------~~~h~~~v~~~~~ 284 (410)
T 1vyh_C 229 -------TFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKEC----KAE------------LREHRHVVECISW 284 (410)
T ss_dssp -------EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCE----EEE------------ECCCSSCEEEEEE
T ss_pred -------EEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCce----eeE------------ecCCCceEEEEEE
Confidence 457899999999999998 9999999999999999988764 222 3445678999999
Q ss_pred eec--------------------CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC
Q 010287 349 ARN--------------------GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 407 (513)
Q Consensus 349 sp~--------------------~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 407 (513)
+|+ +.+|++|+. +.|++||+++ +.++..+.+|... |.+++|+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~---------------v~~v~~~~ 348 (410)
T 1vyh_C 285 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNW---------------VRGVLFHS 348 (410)
T ss_dssp CCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSC---------------EEEEEECS
T ss_pred cCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC-CceEEEEECCCCc---------------EEEEEEcC
Confidence 996 678999875 9999999996 8888888888765 45899999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 408 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 408 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
++++|++|+.||.|++||+.++ .....+.+|...|.+++|+|++.+|++|+.|+.|++
T Consensus 349 ~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~v 406 (410)
T 1vyh_C 349 GGKFILSCADDKTLRVWDYKNK-RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406 (410)
T ss_dssp SSSCEEEEETTTEEEEECCTTS-CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCC-ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 9999999999999999999876 455788999999999999999999999999999999
No 7
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.4e-43 Score=323.74 Aligned_cols=284 Identities=14% Similarity=0.219 Sum_probs=240.8
Q ss_pred ccccccccEEEEEEcCC----CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccc
Q 010287 30 EEVQEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~----g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (513)
...+|.+.|++++|+|+ +.+||+|+.|++|+||++.+... .....+.+|.
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~---------------------~~~~~l~gh~----- 80 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL---------------------DLQWSLEGHQ----- 80 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE---------------------EEEEEECCCS-----
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe---------------------eeeeeeccCC-----
Confidence 34579999999999985 67999999999999999876542 1334578898
Q ss_pred cccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCc
Q 010287 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (513)
Q Consensus 106 ~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 185 (513)
..|.+++|+| ++.++++++.|++|++||+.+++....
T Consensus 81 -------~~v~~~~~~~--~~~~l~s~s~D~~i~lWd~~~~~~~~~---------------------------------- 117 (321)
T 3ow8_A 81 -------LGVVSVDISH--TLPIAASSSLDAHIRLWDLENGKQIKS---------------------------------- 117 (321)
T ss_dssp -------SCEEEEEECS--SSSEEEEEETTSEEEEEETTTTEEEEE----------------------------------
T ss_pred -------CCEEEEEECC--CCCEEEEEeCCCcEEEEECCCCCEEEE----------------------------------
Confidence 8899999955 777999999999999999998765432
Q ss_pred cccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCc
Q 010287 186 GERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 264 (513)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~ 264 (513)
+..|...+.+++|+|++++|+++ .++.|++|++++++
T Consensus 118 ------------------------------------------~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~ 155 (321)
T 3ow8_A 118 ------------------------------------------IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK 155 (321)
T ss_dssp ------------------------------------------EECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS
T ss_pred ------------------------------------------EeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc
Confidence 23445567889999999999999 79999999999776
Q ss_pred ceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEE
Q 010287 265 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 344 (513)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 344 (513)
... .+..|...|.+++|+|++ ++|++++.||.|++||+++++. +..+ .+|...|.
T Consensus 156 ~~~--------~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~----~~~~------------~~h~~~v~ 210 (321)
T 3ow8_A 156 KEY--------SLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKL----LHTL------------EGHAMPIR 210 (321)
T ss_dssp EEE--------EEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE----EEEE------------CCCSSCCC
T ss_pred eeE--------EecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcE----EEEE------------cccCCcee
Confidence 543 346678889999999999 9999999999999999988765 3333 44557899
Q ss_pred EEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEE
Q 010287 345 DIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 423 (513)
Q Consensus 345 ~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 423 (513)
+++|+|++++|++++. +.|++||++. ......+.+|... |++++|+|++++|++++.|+.|++
T Consensus 211 ~l~~spd~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~~~~sp~~~~l~s~s~D~~v~i 274 (321)
T 3ow8_A 211 SLTFSPDSQLLVTASDDGYIKIYDVQH-ANLAGTLSGHASW---------------VLNVAFCPDDTHFVSSSSDKSVKV 274 (321)
T ss_dssp EEEECTTSCEEEEECTTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEECCC-cceeEEEcCCCCc---------------eEEEEECCCCCEEEEEeCCCcEEE
Confidence 9999999999999885 9999999996 7778888888765 558999999999999999999999
Q ss_pred EecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 424 FGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 424 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
||+.++ .....+.+|...|..++|+|+++.|++++.|+.|++
T Consensus 275 wd~~~~-~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~v 316 (321)
T 3ow8_A 275 WDVGTR-TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHI 316 (321)
T ss_dssp EETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred EeCCCC-EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 999987 455788899999999999999999999999999999
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.5e-42 Score=316.53 Aligned_cols=285 Identities=17% Similarity=0.203 Sum_probs=238.9
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
.+.+|.+.|++++|+|++++||+|+.||+|+|||+.++.. ...+.+|.
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~-----------------------~~~~~~~~--------- 55 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE-----------------------VRSIQVTE--------- 55 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-----------------------EEEEECCS---------
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce-----------------------eEEeeccC---------
Confidence 4568999999999999999999999999999999876542 24567777
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
..|.+++|+| ++++|++++.|++|++||+.+++....
T Consensus 56 ---~~v~~~~~~~--~~~~l~s~s~d~~i~vwd~~~~~~~~~-------------------------------------- 92 (304)
T 2ynn_A 56 ---TPVRAGKFIA--RKNWIIVGSDDFRIRVFNYNTGEKVVD-------------------------------------- 92 (304)
T ss_dssp ---SCEEEEEEEG--GGTEEEEEETTSEEEEEETTTCCEEEE--------------------------------------
T ss_pred ---CcEEEEEEeC--CCCEEEEECCCCEEEEEECCCCcEEEE--------------------------------------
Confidence 8899999976 677999999999999999988764332
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~ 268 (513)
+.+|...|.+++|+|++++|++| .|++|++||++++.....
T Consensus 93 --------------------------------------~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~ 134 (304)
T 2ynn_A 93 --------------------------------------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ 134 (304)
T ss_dssp --------------------------------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE
T ss_pred --------------------------------------EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh
Confidence 35788899999999999999998 799999999987654433
Q ss_pred ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 348 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 348 (513)
.+.+|...|.+++|+|+++.+|++|+.|+.|++||++++... ..+ ..+|...+..+.|
T Consensus 135 -------~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~----~~~-----------~~~~~~~v~~~~~ 192 (304)
T 2ynn_A 135 -------TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN----FTL-----------TTGQERGVNYVDY 192 (304)
T ss_dssp -------EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS----EEE-----------ECCCTTCEEEEEE
T ss_pred -------hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc----cee-----------ccCCcCcEEEEEE
Confidence 457899999999999954489999999999999999776532 111 1233467899999
Q ss_pred ee--cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEe
Q 010287 349 AR--NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 425 (513)
Q Consensus 349 sp--~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 425 (513)
+| ++.+|++++. +.|++||+++ ++.+..+.+|... |..++|+|++++|++|+.||.|++||
T Consensus 193 ~~~~~~~~l~s~s~D~~i~iWd~~~-~~~~~~~~~h~~~---------------v~~~~~~p~~~~l~s~s~Dg~i~iWd 256 (304)
T 2ynn_A 193 YPLPDKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSN---------------VSFAVFHPTLPIIISGSEDGTLKIWN 256 (304)
T ss_dssp CCSTTCCEEEEEETTSEEEEEETTT-TEEEEEEECCSSC---------------EEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred EEcCCCCEEEEEcCCCeEEEEeCCC-CccceeeCCCCCC---------------EEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 87 7789999875 9999999996 8888889888765 45899999999999999999999999
Q ss_pred cCCCCccceeecCCCCceeEEEEcCCCC--ceeeecCCCeEEE
Q 010287 426 CSEGSAESTTLEASKNPMRRQVQTPSRP--SRPLGSLSGVVRR 466 (513)
Q Consensus 426 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~ 466 (513)
+.++ +....+..|...+.+++++|++. ++++|+.||.+.+
T Consensus 257 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~ 298 (304)
T 2ynn_A 257 SSTY-KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298 (304)
T ss_dssp TTTC-CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEE
T ss_pred CCCC-ceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEE
Confidence 9987 55578889999999999999876 5888888887666
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.1e-42 Score=321.50 Aligned_cols=295 Identities=15% Similarity=0.118 Sum_probs=227.3
Q ss_pred ccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccc
Q 010287 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (513)
Q Consensus 32 ~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (513)
..|...|++++|+|||++|++++ |+++++||....... ....++.. ........+
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~-----------------------~~~~~~~~-~~~~~~~~~ 81 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFK-----------------------DPCAAPNE-GFCSAGVQT 81 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEES-----------------------SGGGTTCG-GGCSEEEEE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeec-----------------------cccccCCc-ceeeeeecc
Confidence 45778899999999999999888 678888874321100 00000000 000111223
Q ss_pred cccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccC
Q 010287 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (513)
Q Consensus 112 ~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 191 (513)
+..|.+++|+| + ..|++++.||+|+|||+.+++......
T Consensus 82 ~~~v~~~~~s~--d-~~l~~~s~dg~v~lWd~~~~~~~~~~~-------------------------------------- 120 (344)
T 4gqb_B 82 EAGVADLTWVG--E-RGILVASDSGAVELWELDENETLIVSK-------------------------------------- 120 (344)
T ss_dssp SSCEEEEEEET--T-TEEEEEETTSEEEEEEECTTSSCEEEE--------------------------------------
T ss_pred CCCEEEEEEeC--C-CeEEEEECCCEEEEEeccCCCceeEee--------------------------------------
Confidence 37899999976 4 478999999999999998876433211
Q ss_pred CCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeec
Q 010287 192 CASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 270 (513)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~ 270 (513)
....+|...|.+++|+|++++|++| .|++|++||+++++...
T Consensus 121 ----------------------------------~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~--- 163 (344)
T 4gqb_B 121 ----------------------------------FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS--- 163 (344)
T ss_dssp ----------------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---
T ss_pred ----------------------------------ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE---
Confidence 1135899999999999999999999 79999999999765443
Q ss_pred ccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee
Q 010287 271 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 350 (513)
Q Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp 350 (513)
.+.+|...|.+++|+|++..+|++++.|+.|++||+++++.. ..+.. ..+...+.+++|+|
T Consensus 164 -----~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~----~~~~~----------~~~~~~~~~~~~~p 224 (344)
T 4gqb_B 164 -----SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA----SQIGC----------SAPGYLPTSLAWHP 224 (344)
T ss_dssp -----EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE----EECC--------------CCCEEEEEECS
T ss_pred -----EEcCcCCceEEEEecCCCCCceeeecccccccccccccccee----eeeec----------ceeeccceeeeecC
Confidence 567899999999999998678999999999999999987652 22221 22335689999999
Q ss_pred c-CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC-CEEEEEeCCCcEEEEecC
Q 010287 351 N-GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCS 427 (513)
Q Consensus 351 ~-~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~ 427 (513)
+ +++|++|+. +.|++||+++ ++++..+.+|... |++++|+|++ ++|++|+.|++|+|||+.
T Consensus 225 ~~~~~l~sg~~dg~v~~wd~~~-~~~~~~~~~h~~~---------------v~~v~fsp~g~~~lasgs~D~~i~vwd~~ 288 (344)
T 4gqb_B 225 QQSEVFVFGDENGTVSLVDTKS-TSCVLSSAVHSQC---------------VTGLVFSPHSVPFLASLSEDCSLAVLDSS 288 (344)
T ss_dssp SCTTEEEEEETTSEEEEEESCC---CCEEEECCSSC---------------EEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred CCCcceEEeccCCcEEEEECCC-CcEEEEEcCCCCC---------------EEEEEEccCCCeEEEEEeCCCeEEEEECC
Confidence 5 567888775 9999999997 8888999888876 5599999998 579999999999999998
Q ss_pred CCCccceeecCCCCceeEEEEcCCCCc-eeeecCCCeEEE
Q 010287 428 EGSAESTTLEASKNPMRRQVQTPSRPS-RPLGSLSGVVRR 466 (513)
Q Consensus 428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~ 466 (513)
+++ ...+.+|...|.+++|+|+++. |++++.|+.|++
T Consensus 289 ~~~--~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~ 326 (344)
T 4gqb_B 289 LSE--LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVH 326 (344)
T ss_dssp CCE--EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred CCc--EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence 763 3567899999999999999875 679999999999
No 10
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.2e-42 Score=318.77 Aligned_cols=287 Identities=14% Similarity=0.200 Sum_probs=236.2
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
...+|.+.|++++|+|++++|++|+.||+|+|||..++.. ...+..|.
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~-----------------------~~~~~~~~--------- 97 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-----------------------VHAIPLRS--------- 97 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-----------------------EEEEECSS---------
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc-----------------------ceEeecCC---------
Confidence 4668999999999999999999999999999999766553 24456677
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
..|.+++|+| ++.++++++.|+.|++|++.++.....
T Consensus 98 ---~~v~~~~~s~--~~~~l~s~~~d~~v~iw~~~~~~~~~~-------------------------------------- 134 (340)
T 1got_B 98 ---SWVMTCAYAP--SGNYVACGGLDNICSIYNLKTREGNVR-------------------------------------- 134 (340)
T ss_dssp ---SCEEEEEECT--TSSEEEEEETTCEEEEEETTTCSBSCE--------------------------------------
T ss_pred ---ccEEEEEECC--CCCEEEEEeCCCeEEEEECccCCCcce--------------------------------------
Confidence 7899999965 778999999999999999876431100
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~ 268 (513)
....+.+|...|.++.|++++. ++++ .|++|++||++++....
T Consensus 135 ----------------------------------~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~- 178 (340)
T 1got_B 135 ----------------------------------VSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTT- 178 (340)
T ss_dssp ----------------------------------EEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEE-
T ss_pred ----------------------------------eEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEE-
Confidence 0011468889999999999876 5555 89999999998765443
Q ss_pred ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 348 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 348 (513)
.+.+|...|.+++|+|++ .+|++++.|+.|++||++++.. ... +.+|...|.+++|
T Consensus 179 -------~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~----~~~------------~~~h~~~v~~v~~ 234 (340)
T 1got_B 179 -------TFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMC----RQT------------FTGHESDINAICF 234 (340)
T ss_dssp -------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSE----EEE------------ECCCSSCEEEEEE
T ss_pred -------EEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCee----EEE------------EcCCcCCEEEEEE
Confidence 457899999999999998 8999999999999999988764 223 3456688999999
Q ss_pred eecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287 349 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 427 (513)
Q Consensus 349 sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 427 (513)
+|++.+|++|+. +.|++||++. ++.+..+..+.. ...|++++|+|++++|++|+.|+.|++||+.
T Consensus 235 ~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~~~~-------------~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~ 300 (340)
T 1got_B 235 FPNGNAFATGSDDATCRLFDLRA-DQELMTYSHDNI-------------ICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp CTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTTC-------------CSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cCCCCEEEEEcCCCcEEEEECCC-CcEEEEEccCCc-------------ccceEEEEECCCCCEEEEECCCCeEEEEEcc
Confidence 999999999875 9999999986 555544432211 1125689999999999999999999999998
Q ss_pred CCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
++ .....+.+|..+|.++.|+|++.+|++|+.|+.|++
T Consensus 301 ~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~i 338 (340)
T 1got_B 301 KA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338 (340)
T ss_dssp TC-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred cC-cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEe
Confidence 77 455788999999999999999999999999999998
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.7e-42 Score=321.73 Aligned_cols=301 Identities=16% Similarity=0.186 Sum_probs=224.4
Q ss_pred ccccccccceeccccccccccccccEEEEEEcCCCCEEEeecC------CCcEEEEEeeCCCCCCCccCccccccccccC
Q 010287 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDR------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSR 86 (513)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 86 (513)
....|++.. .....|...|++++|||||++||+|+. |+.|++|+..++...
T Consensus 27 ~~~~w~~p~-------~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~---------------- 83 (357)
T 4g56_B 27 KGSAWGRPV-------TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN---------------- 83 (357)
T ss_dssp --------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C----------------
T ss_pred cccccCCCC-------CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc----------------
Confidence 345576543 123469999999999999999999997 678888886654421
Q ss_pred CCcceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCC
Q 010287 87 HPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGP 166 (513)
Q Consensus 87 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (513)
..+.....+|. ..|.+++|+| ++ .+++++.||+|+|||+.+++......
T Consensus 84 ---~~~~~~~~~~~------------~~V~~~~~s~--d~-~~l~~s~dg~v~lWd~~~~~~~~~~~------------- 132 (357)
T 4g56_B 84 ---ESLCTAGVQTE------------AGVTDVAWVS--EK-GILVASDSGAVELWEILEKESLLVNK------------- 132 (357)
T ss_dssp ---GGGCSEEEECS------------SCEEEEEEET--TT-EEEEEETTSCEEEC--------CCCC-------------
T ss_pred ---eeEecccCCCC------------CCEEEEEEcC--CC-CEEEEECCCEEEEeeccccceeEEEe-------------
Confidence 11112234455 7899999976 54 57788999999999998875332211
Q ss_pred cccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCE
Q 010287 167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 246 (513)
Q Consensus 167 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 246 (513)
....+|...|.+++|+|++++
T Consensus 133 -----------------------------------------------------------~~~~~h~~~V~~v~~spdg~~ 153 (357)
T 4g56_B 133 -----------------------------------------------------------FAKYEHDDIVKTLSVFSDGTQ 153 (357)
T ss_dssp -----------------------------------------------------------EEECCCSSCEEEEEECSSSSE
T ss_pred -----------------------------------------------------------eccCCCCCCEEEEEECCCCCE
Confidence 013578899999999999999
Q ss_pred EEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeec
Q 010287 247 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 325 (513)
Q Consensus 247 l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 325 (513)
|++| .|+.|++||+++++... .+.+|...|++++|+|++..++++++.||.|++||+++++... .+.
T Consensus 154 l~sgs~dg~v~iwd~~~~~~~~--------~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~----~~~ 221 (357)
T 4g56_B 154 AVSGGKDFSVKVWDLSQKAVLK--------SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT----RID 221 (357)
T ss_dssp EEEEETTSCEEEEETTTTEEEE--------EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC----BCC
T ss_pred EEEEeCCCeEEEEECCCCcEEE--------EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee----eee
Confidence 9998 79999999999765443 4578999999999999986789999999999999998876522 111
Q ss_pred cccCCCCccccccccccEEEEEEeecC-CEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeE
Q 010287 326 EQEAPGTRSFFTEIIASISDIKFARNG-RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 403 (513)
Q Consensus 326 ~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (513)
...+...+.+++|+|++ .+|++|+. +.|++||+++ ++.+..+.+|... |+++
T Consensus 222 ----------~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~-~~~~~~~~~~~~~---------------v~~l 275 (357)
T 4g56_B 222 ----------FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN-PDSAQTSAVHSQN---------------ITGL 275 (357)
T ss_dssp ----------CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC-GGGCEEECCCSSC---------------EEEE
T ss_pred ----------eccccccccchhhhhcccceEEEeecccceeEEECCC-CcEeEEEecccee---------------EEEE
Confidence 12344679999999974 67778775 9999999996 7888888877765 5599
Q ss_pred EEeCCC-CEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcC-CCCceeeecCCCeEEE
Q 010287 404 CLSGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP-SRPSRPLGSLSGVVRR 466 (513)
Q Consensus 404 ~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~ 466 (513)
+|+|++ ++|++|+.|+.|+|||++++ +. ....+|..+|++++|+| ++++|++++.|+.|++
T Consensus 276 ~~sp~~~~~lasgs~D~~i~iwd~~~~-~~-~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~i 338 (357)
T 4g56_B 276 AYSYHSSPFLASISEDCTVAVLDADFS-EV-FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLH 338 (357)
T ss_dssp EECSSSSCCEEEEETTSCEEEECTTSC-EE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred EEcCCCCCEEEEEeCCCEEEEEECCCC-cE-eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEE
Confidence 999987 57999999999999999977 33 34458999999999998 7899999999999999
No 12
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.2e-41 Score=310.66 Aligned_cols=290 Identities=16% Similarity=0.217 Sum_probs=238.3
Q ss_pred eccccCCCCcccccccccccccceeEEEeec--CCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccC
Q 010287 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQS--ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (513)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~--~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (513)
...+.+|+ +.|.+++|+|. .++.+|++|+.|++|++|++..+......
T Consensus 25 ~~~~~~H~------------~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~------------------ 74 (321)
T 3ow8_A 25 FKQEQAHD------------DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQW------------------ 74 (321)
T ss_dssp EEETTSSS------------SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEE------------------
T ss_pred eeecccCC------------CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeee------------------
Confidence 34567888 99999999774 24678999999999999999776432211
Q ss_pred cccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE
Q 010287 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 250 (513)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 250 (513)
.+.+|...|.+++|++++.+++++
T Consensus 75 --------------------------------------------------------~l~gh~~~v~~~~~~~~~~~l~s~ 98 (321)
T 3ow8_A 75 --------------------------------------------------------SLEGHQLGVVSVDISHTLPIAASS 98 (321)
T ss_dssp --------------------------------------------------------EECCCSSCEEEEEECSSSSEEEEE
T ss_pred --------------------------------------------------------eeccCCCCEEEEEECCCCCEEEEE
Confidence 146888999999999999999998
Q ss_pred -cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccC
Q 010287 251 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 329 (513)
Q Consensus 251 -~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 329 (513)
.|++|++||+++++... .+..|...+.+++|+|++ ++|++++.||.|++||++++.. ...+
T Consensus 99 s~D~~i~lWd~~~~~~~~--------~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~----~~~~----- 160 (321)
T 3ow8_A 99 SLDAHIRLWDLENGKQIK--------SIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKK----EYSL----- 160 (321)
T ss_dssp ETTSEEEEEETTTTEEEE--------EEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSE----EEEE-----
T ss_pred eCCCcEEEEECCCCCEEE--------EEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCce----eEEe-----
Confidence 79999999999766443 345677889999999999 9999999999999999988764 2222
Q ss_pred CCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC
Q 010287 330 PGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 408 (513)
Q Consensus 330 ~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 408 (513)
..|...+.+++|+|++++|++|+. +.|++||+++ ++.+..+.+|... |.+++|+|+
T Consensus 161 -------~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~l~~spd 217 (321)
T 3ow8_A 161 -------DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLHTLEGHAMP---------------IRSLTFSPD 217 (321)
T ss_dssp -------ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSC---------------CCEEEECTT
T ss_pred -------cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEcccCCc---------------eeEEEEcCC
Confidence 234467999999999999999875 9999999996 7888888877765 458999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCe
Q 010287 409 GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKL 488 (513)
Q Consensus 409 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i 488 (513)
+++|++|+.|+.|++||+.++ .....+.+|..+|.+++|+|++++|++++.|+.|++ |+............|...|
T Consensus 218 ~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~i---wd~~~~~~~~~~~~h~~~v 293 (321)
T 3ow8_A 218 SQLLVTASDDGYIKIYDVQHA-NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKV---WDVGTRTCVHTFFDHQDQV 293 (321)
T ss_dssp SCEEEEECTTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE---EETTTTEEEEEECCCSSCE
T ss_pred CCEEEEEcCCCeEEEEECCCc-ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEE---EeCCCCEEEEEEcCCCCcE
Confidence 999999999999999999977 455788999999999999999999999999999999 4443323333445689999
Q ss_pred eEEEEeCCCCEEEEEc-CCcEEEEeC
Q 010287 489 LHLAWHPSENSIACAA-SNSLYMYYA 513 (513)
Q Consensus 489 ~~~~~sp~~~~la~~~-~~~~~i~~~ 513 (513)
.+++|+|++++|++++ ++.+.+|+.
T Consensus 294 ~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 294 WGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 9999999999999877 667889873
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.4e-41 Score=321.77 Aligned_cols=277 Identities=16% Similarity=0.224 Sum_probs=235.7
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
..|++++|+| ++.+|++++.|++|++||+.+++....
T Consensus 109 ~~V~~~~~~p--~~~~l~s~s~Dg~i~vwd~~~~~~~~~----------------------------------------- 145 (410)
T 1vyh_C 109 SPVTRVIFHP--VFSVMVSASEDATIKVWDYETGDFERT----------------------------------------- 145 (410)
T ss_dssp SCEEEEEECS--SSSEEEEEESSSCEEEEETTTCCCCEE-----------------------------------------
T ss_pred CcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEE-----------------------------------------
Confidence 8999999966 777999999999999999988753321
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
+.+|...|.+++|+|++++|++| .|++|++||+.+.+...
T Consensus 146 -----------------------------------l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~---- 186 (410)
T 1vyh_C 146 -----------------------------------LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR---- 186 (410)
T ss_dssp -----------------------------------ECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE----
T ss_pred -----------------------------------EeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE----
Confidence 35788899999999999999998 79999999998655432
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 351 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 351 (513)
.+.+|...|.+++|+|++ .+|++++.|+.|++||++++.. +.. +.+|...|.++.++|+
T Consensus 187 ----~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~----~~~------------~~~h~~~v~~~~~~~~ 245 (410)
T 1vyh_C 187 ----TMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYC----VKT------------FTGHREWVRMVRPNQD 245 (410)
T ss_dssp ----CCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCE----EEE------------EECCSSCEEEEEECTT
T ss_pred ----EEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcE----EEE------------EeCCCccEEEEEECCC
Confidence 567899999999999998 8999999999999999998765 333 3455678999999999
Q ss_pred CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC--------------------CC
Q 010287 352 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD--------------------GG 410 (513)
Q Consensus 352 ~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~ 410 (513)
+.+|++|+. +.|++||+.+ +.....+..|... |.+++|+|+ +.
T Consensus 246 g~~l~s~s~D~~v~vwd~~~-~~~~~~~~~h~~~---------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 309 (410)
T 1vyh_C 246 GTLIASCSNDQTVRVWVVAT-KECKAELREHRHV---------------VECISWAPESSYSSISEATGSETKKSGKPGP 309 (410)
T ss_dssp SSEEEEEETTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECCSCGGGGGGGCCSCC-------CC
T ss_pred CCEEEEEcCCCeEEEEECCC-CceeeEecCCCce---------------EEEEEEcCcccccchhhhccccccccCCCCC
Confidence 999999875 9999999986 7777788777765 458889886 67
Q ss_pred EEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeE
Q 010287 411 RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLH 490 (513)
Q Consensus 411 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~ 490 (513)
+|++|+.|+.|++||+.++ .....+.+|..+|.+++|+|++++|++|+.|+.|++ |+............|...|++
T Consensus 310 ~l~sgs~D~~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~v---wd~~~~~~~~~~~~h~~~v~~ 385 (410)
T 1vyh_C 310 FLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV---WDYKNKRCMKTLNAHEHFVTS 385 (410)
T ss_dssp EEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEE---ECCTTSCCCEEEECCSSCEEE
T ss_pred EEEEEeCCCeEEEEECCCC-ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEE---EECCCCceEEEEcCCCCcEEE
Confidence 8999999999999999987 455788899999999999999999999999999999 444332333344568999999
Q ss_pred EEEeCCCCEEEEEc-CCcEEEEe
Q 010287 491 LAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 491 ~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
++|+|++++||+++ ++.+.+|.
T Consensus 386 l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 386 LDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp EEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEcCCCCEEEEEeCCCcEEEEe
Confidence 99999999999888 77788886
No 14
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-42 Score=353.64 Aligned_cols=392 Identities=12% Similarity=0.090 Sum_probs=277.6
Q ss_pred cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
..+|.+.|++++|+|++++||+|+.||+|+||+..+.+. ... ..|.
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~-----------------------~~~-~~~~---------- 58 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV-----------------------VIK-LEDR---------- 58 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE-----------------------EEE-CSSC----------
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE-----------------------EEE-cCCC----------
Confidence 458999999999999999999999999999999654332 111 2344
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
..|.+++|+| +.+|++++.|++|++||+.++++....... .....++|+|++..+
T Consensus 59 --~~V~~l~fsp---g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~----------------~~V~~v~~sp~g~~l---- 113 (902)
T 2oaj_A 59 --SAIKEMRFVK---GIYLVVINAKDTVYVLSLYSQKVLTTVFVP----------------GKITSIDTDASLDWM---- 113 (902)
T ss_dssp --CCEEEEEEET---TTEEEEEETTCEEEEEETTTCSEEEEEECS----------------SCEEEEECCTTCSEE----
T ss_pred --CCEEEEEEcC---CCEEEEEECcCeEEEEECCCCcEEEEEcCC----------------CCEEEEEECCCCCEE----
Confidence 7899999976 458999999999999999988765544311 123377889999987
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccc-ee--e-EeeccccCCeEEEEeccC-CCEEEEE-cCCeEEEEEcCCCc
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAG-CR--R-IYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISN 264 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~--~-~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~vwd~~~~~ 264 (513)
+++..++.|++||+.......... .. . ....+|...|.+++|+|+ +..+++| .|+.| +||+++++
T Consensus 114 --------~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~ 184 (902)
T 2oaj_A 114 --------LIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE 184 (902)
T ss_dssp --------EEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE
T ss_pred --------EEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc
Confidence 888999999999997654310000 00 0 123678999999999996 4678888 79999 99998765
Q ss_pred ceeeecccC-----c------cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccc--------------
Q 010287 265 QSFNIVDVK-----P------ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT-------------- 319 (513)
Q Consensus 265 ~~~~~~~~~-----~------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-------------- 319 (513)
....+. .. + .....|...|.+++|+|++ .+|++++.||.|++||+++++....
T Consensus 185 ~~~~~~-~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~ 262 (902)
T 2oaj_A 185 IKQSFI-YELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPD 262 (902)
T ss_dssp EEEEEC-CCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTT
T ss_pred eEEEEe-cccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCc
Confidence 433221 10 0 0123456789999999998 9999999999999999977543210
Q ss_pred ----------cce-------------------------------eec-cc------------------------------
Q 010287 320 ----------HSK-------------------------------LFE-EQ------------------------------ 327 (513)
Q Consensus 320 ----------~~~-------------------------------~~~-~~------------------------------ 327 (513)
.+. .+. ++
T Consensus 263 ~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 342 (902)
T 2oaj_A 263 YIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTN 342 (902)
T ss_dssp CCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSS
T ss_pred CCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCC
Confidence 000 000 00
Q ss_pred -------------------cCC---------CCc------------------cccccccccEEEEE--------------
Q 010287 328 -------------------EAP---------GTR------------------SFFTEIIASISDIK-------------- 347 (513)
Q Consensus 328 -------------------~~~---------~~~------------------~~~~~~~~~v~~i~-------------- 347 (513)
.++ ... ..+..|...|++++
T Consensus 343 ~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~ 422 (902)
T 2oaj_A 343 VPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALS 422 (902)
T ss_dssp SCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHH
T ss_pred CceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHh
Confidence 000 000 00011223344444
Q ss_pred --------------------EeecCCEEEEEeC-CeEEEEEccCCCCCe--eeee---------cccccccccccccccC
Q 010287 348 --------------------FARNGRHILSRDY-MTLKLWDINMDSGPV--ATFQ---------VHEHLRPKLCDLYEND 395 (513)
Q Consensus 348 --------------------~sp~~~~l~~~~~-~~v~iwd~~~~~~~~--~~~~---------~~~~~~~~~~~~~~~~ 395 (513)
|+|++++|++|+. ++|++||+.. +... ..+. +|..
T Consensus 423 ~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~-g~~~~~~~~~~~l~~~~~~~h~~------------ 489 (902)
T 2oaj_A 423 AAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASH-GDIQDNASFEVNLSRTLNKAKEL------------ 489 (902)
T ss_dssp TTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSC-CTTTTTBCEEEEHHHHTTCSSSC------------
T ss_pred cccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCC-ccccCCceEEeechhhcCCCCCC------------
Confidence 4678899999875 9999999986 4321 1111 2222
Q ss_pred CccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc--------------------------------------------
Q 010287 396 SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA-------------------------------------------- 431 (513)
Q Consensus 396 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-------------------------------------------- 431 (513)
.|++++|+||+++||+|+.||+|+||++.+++.
T Consensus 490 ---~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 566 (902)
T 2oaj_A 490 ---AVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFM 566 (902)
T ss_dssp ---CEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEE
T ss_pred ---ceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccc
Confidence 266999999999999999999999999986521
Q ss_pred cceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccC-----Cccc-cccCCeeEEEEe-----CCC---
Q 010287 432 ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDAN-----GNAF-DFSMKLLHLAWH-----PSE--- 497 (513)
Q Consensus 432 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~-----~~~~-~~~~~i~~~~~s-----p~~--- 497 (513)
...++.+|..+|.+++|+|+| +||+|+.|+.|++ |+....... .... +|...|++++|+ |||
T Consensus 567 ~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~l---wd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~ 642 (902)
T 2oaj_A 567 PSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLML---IDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSS 642 (902)
T ss_dssp EEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEE---EETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEE
T ss_pred eeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEE---EECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcc
Confidence 145678899999999999999 9999999999999 333221111 1222 688999999999 886
Q ss_pred CEEEEEc-CCcEEEEe
Q 010287 498 NSIACAA-SNSLYMYY 512 (513)
Q Consensus 498 ~~la~~~-~~~~~i~~ 512 (513)
++|++++ ++.+++|.
T Consensus 643 ~~l~sgs~D~tv~~wd 658 (902)
T 2oaj_A 643 ILMVCGTDMGEVITYK 658 (902)
T ss_dssp EEEEEEETTSEEEEEE
T ss_pred eEEEEEecCCcEEEEE
Confidence 7899888 67788886
No 15
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.4e-41 Score=312.22 Aligned_cols=291 Identities=14% Similarity=0.202 Sum_probs=236.1
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
...+|.+.|++++|+|++++||+|+.||+|+|||..++.. ...+..|.
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~-----------------------~~~~~~~~--------- 106 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK-----------------------EHAVTMPC--------- 106 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------------EEEEECSS---------
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc-----------------------ceEEecCC---------
Confidence 5668999999999999999999999999999999765542 23345565
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
..|.+++|+| ++..+++++.|+.+++|++........
T Consensus 107 ---~~v~~~~~sp--~g~~lasg~~d~~i~v~~~~~~~~~~~-------------------------------------- 143 (354)
T 2pbi_B 107 ---TWVMACAYAP--SGCAIACGGLDNKCSVYPLTFDKNENM-------------------------------------- 143 (354)
T ss_dssp ---SCCCEEEECT--TSSEEEEESTTSEEEEEECCCCTTCCS--------------------------------------
T ss_pred ---CCEEEEEECC--CCCEEEEeeCCCCEEEEEEeccccccc--------------------------------------
Confidence 7799999965 788999999999999999865321000
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~ 268 (513)
. .....+.+|...|.+++|+|+++.|+++ .|++|++||+++++...
T Consensus 144 -------------------------------~-~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~- 190 (354)
T 2pbi_B 144 -------------------------------A-AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ- 190 (354)
T ss_dssp -------------------------------G-GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-
T ss_pred -------------------------------c-ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE-
Confidence 0 0001135788999999999999999998 79999999999766443
Q ss_pred ecccCccccccccCCeEEEEEeCCC-CeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHPTH-CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 347 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 347 (513)
.+.+|...|.+++|+|+. .++|++|+.||.|++||+++++. ...+ .+|...|.+++
T Consensus 191 -------~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~----~~~~------------~~h~~~v~~v~ 247 (354)
T 2pbi_B 191 -------SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC----VQAF------------ETHESDVNSVR 247 (354)
T ss_dssp -------EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE----EEEE------------CCCSSCEEEEE
T ss_pred -------EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE----EEEe------------cCCCCCeEEEE
Confidence 457899999999998842 27999999999999999998765 3333 44557899999
Q ss_pred EeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEec
Q 010287 348 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 426 (513)
Q Consensus 348 ~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 426 (513)
|+|++.+|++++. ++|++||++. ...+..+..+.. ...+.+++|+|++++|++|+.|+.|++||+
T Consensus 248 ~~p~~~~l~s~s~D~~v~lwd~~~-~~~~~~~~~~~~-------------~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~ 313 (354)
T 2pbi_B 248 YYPSGDAFASGSDDATCRLYDLRA-DREVAIYSKESI-------------IFGASSVDFSLSGRLLFAGYNDYTINVWDV 313 (354)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTTC-------------CSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EeCCCCEEEEEeCCCeEEEEECCC-CcEEEEEcCCCc-------------ccceeEEEEeCCCCEEEEEECCCcEEEEEC
Confidence 9999999999875 9999999985 544444432221 112558999999999999999999999999
Q ss_pred CCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 427 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 427 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.++ .....+.+|..+|.+++|+|++++|++|+.|+.|++
T Consensus 314 ~~~-~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~v 352 (354)
T 2pbi_B 314 LKG-SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRV 352 (354)
T ss_dssp TTC-SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred CCC-ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEe
Confidence 877 445788899999999999999999999999999998
No 16
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.7e-41 Score=305.56 Aligned_cols=287 Identities=17% Similarity=0.199 Sum_probs=234.2
Q ss_pred EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (513)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (513)
....|.+|. +.|++++|+| ++.+|++++.||+|++||+.++.....
T Consensus 5 ~~~~~~~h~------------~~V~~~~fsp--~~~~l~s~~~dg~v~lWd~~~~~~~~~-------------------- 50 (304)
T 2ynn_A 5 IKKTFSNRS------------DRVKGIDFHP--TEPWVLTTLYSGRVELWNYETQVEVRS-------------------- 50 (304)
T ss_dssp CEEEEEEEC------------SCEEEEEECS--SSSEEEEEETTSEEEEEETTTTEEEEE--------------------
T ss_pred eEEeecCCC------------CceEEEEECC--CCCEEEEEcCCCcEEEEECCCCceeEE--------------------
Confidence 345677888 8899999966 778999999999999999988764332
Q ss_pred ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-
Q 010287 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 250 (513)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~- 250 (513)
+..|...|.+++|+|++++|++|
T Consensus 51 --------------------------------------------------------~~~~~~~v~~~~~~~~~~~l~s~s 74 (304)
T 2ynn_A 51 --------------------------------------------------------IQVTETPVRAGKFIARKNWIIVGS 74 (304)
T ss_dssp --------------------------------------------------------EECCSSCEEEEEEEGGGTEEEEEE
T ss_pred --------------------------------------------------------eeccCCcEEEEEEeCCCCEEEEEC
Confidence 24667789999999999999998
Q ss_pred cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCC
Q 010287 251 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 330 (513)
Q Consensus 251 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 330 (513)
.|++|++||+++++... .+.+|...|.+++|+|++ .+|++++.|+.|++||++++... ...
T Consensus 75 ~d~~i~vwd~~~~~~~~--------~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~---~~~------- 135 (304)
T 2ynn_A 75 DDFRIRVFNYNTGEKVV--------DFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWAL---EQT------- 135 (304)
T ss_dssp TTSEEEEEETTTCCEEE--------EEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEE---EEE-------
T ss_pred CCCEEEEEECCCCcEEE--------EEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcch---hhh-------
Confidence 79999999999776543 457899999999999998 89999999999999999876321 112
Q ss_pred CCccccccccccEEEEEEee-cCCEEEEEeC-CeEEEEEccCCCCCeeeee-cccccccccccccccCCccceeeEEEeC
Q 010287 331 GTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSG 407 (513)
Q Consensus 331 ~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 407 (513)
+.+|...|.+++|+| ++.+|++|+. +.|++||++. ..+...+. .+... +..+.|+|
T Consensus 136 -----~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~-~~~~~~~~~~~~~~---------------v~~~~~~~ 194 (304)
T 2ynn_A 136 -----FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTLTTGQERG---------------VNYVDYYP 194 (304)
T ss_dssp -----ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC-SSCSEEEECCCTTC---------------EEEEEECC
T ss_pred -----hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC-CCccceeccCCcCc---------------EEEEEEEE
Confidence 455668899999999 6789999875 9999999986 44444443 23222 34677876
Q ss_pred --CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCcccccc
Q 010287 408 --DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFS 485 (513)
Q Consensus 408 --~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~ 485 (513)
++++|++|+.|+.|++||+.++ .....+++|...|..++|+|++++|++|+.||.|++ |+....+.......|.
T Consensus 195 ~~~~~~l~s~s~D~~i~iWd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~i---Wd~~~~~~~~~~~~~~ 270 (304)
T 2ynn_A 195 LPDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI---WNSSTYKVEKTLNVGL 270 (304)
T ss_dssp STTCCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEE---EETTTCCEEEEECCSS
T ss_pred cCCCCEEEEEcCCCeEEEEeCCCC-ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEE---EECCCCceeeeccCCC
Confidence 7789999999999999999987 455889999999999999999999999999999999 5444333333344577
Q ss_pred CCeeEEEEeCCCC--EEEEEcCCcEEEEe
Q 010287 486 MKLLHLAWHPSEN--SIACAASNSLYMYY 512 (513)
Q Consensus 486 ~~i~~~~~sp~~~--~la~~~~~~~~i~~ 512 (513)
..+.+++|+|++. +||+++++++.+|.
T Consensus 271 ~~~~~~~~~~~~~~~~~asg~~~g~~~~~ 299 (304)
T 2ynn_A 271 ERSWCIATHPTGRKNYIASGFDNGFTVLS 299 (304)
T ss_dssp SSEEEEEECTTCGGGCEEEEETTEEEEEE
T ss_pred ccEEEEEECCCCCceEEEEecCCceEEEE
Confidence 8999999999985 68999999999986
No 17
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.3e-40 Score=304.67 Aligned_cols=305 Identities=15% Similarity=0.238 Sum_probs=229.7
Q ss_pred cccccc-cEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 31 EVQEVD-IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 31 ~~~h~~-~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
..+|.+ .|.+++|+|+|++||+|+.|++|+||++.++... .......+|.
T Consensus 11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~--------------------~~~~~~~~h~--------- 61 (345)
T 3fm0_A 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI--------------------CKSVLSEGHQ--------- 61 (345)
T ss_dssp ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE--------------------EEEEECSSCS---------
T ss_pred ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce--------------------eeeeeccccC---------
Confidence 446877 9999999999999999999999999998765421 0111236787
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
..|.+++|+| ++.+|++++.|+++++|++..+......
T Consensus 62 ---~~v~~~~~sp--~g~~l~s~s~D~~v~iw~~~~~~~~~~~------------------------------------- 99 (345)
T 3fm0_A 62 ---RTVRKVAWSP--CGNYLASASFDATTCIWKKNQDDFECVT------------------------------------- 99 (345)
T ss_dssp ---SCEEEEEECT--TSSEEEEEETTSCEEEEEECCC-EEEEE-------------------------------------
T ss_pred ---CcEEEEEECC--CCCEEEEEECCCcEEEEEccCCCeEEEE-------------------------------------
Confidence 8899999965 7889999999999999998765432211
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~ 268 (513)
.+.+|...|.+++|+|++++|++| .|++|++||++.+.....
T Consensus 100 -------------------------------------~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~ 142 (345)
T 3fm0_A 100 -------------------------------------TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC 142 (345)
T ss_dssp -------------------------------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEE
T ss_pred -------------------------------------EccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEE
Confidence 146888999999999999999998 799999999986543221
Q ss_pred ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 348 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 348 (513)
+ ..+.+|...|.+++|+|++ .+|++++.|+.|++||.+++.... ... +.+|...|.+++|
T Consensus 143 ~-----~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~--~~~------------~~~h~~~v~~l~~ 202 (345)
T 3fm0_A 143 V-----SVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVC--CAT------------LEGHESTVWSLAF 202 (345)
T ss_dssp E-----EEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEE--EEE------------ECCCSSCEEEEEE
T ss_pred E-----EEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEE--EEE------------ecCCCCceEEEEE
Confidence 1 1457899999999999998 899999999999999987654210 112 4556689999999
Q ss_pred eecCCEEEEEeC-CeEEEEEccCCCCCeeeeec-ccccccccccc--cccCCccceeeEEEeCCCCEEEEEeCCCcEEEE
Q 010287 349 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDL--YENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 424 (513)
Q Consensus 349 sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 424 (513)
+|++++|++++. ++|++||....+........ .......+..+ ++.. .|++++|+|++..|++++.|+.|++|
T Consensus 203 sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~v~~~~~~~~l~s~~~d~~i~vw 279 (345)
T 3fm0_A 203 DPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSR---TIYDIAWCQLTGALATACGDDAIRVF 279 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSS---CEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred CCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCC---cEEEEEEecCCCEEEEEeCCCeEEEE
Confidence 999999999875 99999997542221110000 00000000000 0111 25699999999999999999999999
Q ss_pred ecCCCCcc--------ceeecCCCCceeEEEEcCCCC-ceeeecCCCeEEE
Q 010287 425 GCSEGSAE--------STTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR 466 (513)
Q Consensus 425 d~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~ 466 (513)
+....... .....+|...|.+++|+|++. +||+|+.||.|++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~ 330 (345)
T 3fm0_A 280 QEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAF 330 (345)
T ss_dssp EECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred EeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEE
Confidence 98764321 122358999999999999985 8999999999999
No 18
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.8e-40 Score=304.99 Aligned_cols=290 Identities=17% Similarity=0.206 Sum_probs=236.0
Q ss_pred eEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccC
Q 010287 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (513)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (513)
+....+.+|. +.|++++|+| ++.+|++++.||+|++||+.+++....
T Consensus 46 ~~~~~l~gH~------------~~v~~~~~s~--d~~~l~s~s~Dg~v~iWd~~~~~~~~~------------------- 92 (340)
T 1got_B 46 RTRRTLRGHL------------AKIYAMHWGT--DSRLLLSASQDGKLIIWDSYTTNKVHA------------------- 92 (340)
T ss_dssp CEEEEECCCS------------SCEEEEEECT--TSSEEEEEETTTEEEEEETTTCCEEEE-------------------
T ss_pred hhheeecCCC------------CceEEEEECC--CCCEEEEEeCCCcEEEEECCCCCcceE-------------------
Confidence 3456688898 8899999954 788999999999999999987654332
Q ss_pred cccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE
Q 010287 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 250 (513)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 250 (513)
+..|...|.+++|+|++++|++|
T Consensus 93 ---------------------------------------------------------~~~~~~~v~~~~~s~~~~~l~s~ 115 (340)
T 1got_B 93 ---------------------------------------------------------IPLRSSWVMTCAYAPSGNYVACG 115 (340)
T ss_dssp ---------------------------------------------------------EECSSSCEEEEEECTTSSEEEEE
T ss_pred ---------------------------------------------------------eecCCccEEEEEECCCCCEEEEE
Confidence 24566779999999999999998
Q ss_pred -cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccC
Q 010287 251 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 329 (513)
Q Consensus 251 -~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 329 (513)
.|+.|++|++.+........ ..+.+|...|.++.|++++ .+++++.|+.|++||++++.. ...
T Consensus 116 ~~d~~v~iw~~~~~~~~~~~~----~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~----~~~------ 179 (340)
T 1got_B 116 GLDNICSIYNLKTREGNVRVS----RELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQ----TTT------ 179 (340)
T ss_dssp ETTCEEEEEETTTCSBSCEEE----EEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEE----EEE------
T ss_pred eCCCeEEEEECccCCCcceeE----EEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcE----EEE------
Confidence 79999999998654322211 2467899999999999986 488999999999999988765 233
Q ss_pred CCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC
Q 010287 330 PGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 408 (513)
Q Consensus 330 ~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 408 (513)
+.+|.+.|.+++|+|+++++++|+. +.|++||++. +.....+.+|... |++++|+|+
T Consensus 180 ------~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~-~~~~~~~~~h~~~---------------v~~v~~~p~ 237 (340)
T 1got_B 180 ------FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESD---------------INAICFFPN 237 (340)
T ss_dssp ------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CSEEEEECCCSSC---------------EEEEEECTT
T ss_pred ------EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC-CeeEEEEcCCcCC---------------EEEEEEcCC
Confidence 3456688999999999999999875 9999999996 7888888887765 559999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCCccceeec--CCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccC
Q 010287 409 GGRVATGSYSNLFRVFGCSEGSAESTTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSM 486 (513)
Q Consensus 409 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~ 486 (513)
+++|++|+.||.|++||+.++... ..+. .+...+.+++|+|++++|++|+.|+.|++ |+...........+|..
T Consensus 238 ~~~l~s~s~d~~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~v---wd~~~~~~~~~~~~h~~ 313 (340)
T 1got_B 238 GNAFATGSDDATCRLFDLRADQEL-MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV---WDALKADRAGVLAGHDN 313 (340)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEE-EEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE---EETTTCCEEEEEECCSS
T ss_pred CCEEEEEcCCCcEEEEECCCCcEE-EEEccCCcccceEEEEECCCCCEEEEECCCCeEEE---EEcccCcEeeEeecCCC
Confidence 999999999999999999876433 3333 33457999999999999999999999999 43332223334457999
Q ss_pred CeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 487 KLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 487 ~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
.|.+++|+|++++||+++ ++.++||+
T Consensus 314 ~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 314 RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999888 66788885
No 19
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-41 Score=323.33 Aligned_cols=343 Identities=10% Similarity=0.144 Sum_probs=259.9
Q ss_pred ccccccEEEEEEcCCCC-EEEee----------cCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCC
Q 010287 32 VQEVDIISAIEFDKSGD-HLATG----------DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE 100 (513)
Q Consensus 32 ~~h~~~V~~v~~sp~g~-~latg----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 100 (513)
+.+...|++++|+|+|+ +||+| +.||.|+||++.++... .... ...|.
T Consensus 9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--------------------~~~~-~~~~~ 67 (416)
T 2pm9_A 9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE--------------------KPIA-SLQVD 67 (416)
T ss_dssp -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC--------------------SCSC-CCCCS
T ss_pred HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC--------------------cEEE-EEecC
Confidence 34567899999999987 99999 88999999998765421 0001 12354
Q ss_pred CcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceec
Q 010287 101 PEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180 (513)
Q Consensus 101 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (513)
..|++++|+| ++.+|++++.||.|++|++.......
T Consensus 68 ------------~~v~~~~~s~--~~~~l~~~~~dg~v~vw~~~~~~~~~------------------------------ 103 (416)
T 2pm9_A 68 ------------SKFNDLDWSH--NNKIIAGALDNGSLELYSTNEANNAI------------------------------ 103 (416)
T ss_dssp ------------SCEEEEEECS--SSSCEEEEESSSCEEEECCSSTTSCC------------------------------
T ss_pred ------------CceEEEEECC--CCCeEEEEccCCeEEEeecccccccc------------------------------
Confidence 7899999955 77899999999999999997621000
Q ss_pred cCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CCEEEEE-cCCeEEEE
Q 010287 181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLW 258 (513)
Q Consensus 181 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~vw 258 (513)
.. ...+.+|...|.+++|+|+ +++|+++ .|+.|++|
T Consensus 104 -----------------------------------------~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 141 (416)
T 2pm9_A 104 -----------------------------------------NS-MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW 141 (416)
T ss_dssp -----------------------------------------CE-EEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred -----------------------------------------cc-hhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence 00 0113578889999999998 8999998 79999999
Q ss_pred EcCCCc------ceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCC
Q 010287 259 NLEISN------QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 332 (513)
Q Consensus 259 d~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 332 (513)
|+++.. ....+ .....|...|.+++|+|++..+|++++.||.|++||+++++. ...+..+..
T Consensus 142 d~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~--- 209 (416)
T 2pm9_A 142 DMNKCTESPSNYTPLTP-----GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE----VIHLSYTSP--- 209 (416)
T ss_dssp BTTTTSSCTTTCCCBCC-----CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE----EEEECCCCC---
T ss_pred ECCCCcccccccccccc-----ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc----ceEEecccc---
Confidence 998765 22211 234678899999999999548999999999999999988765 333333211
Q ss_pred ccccccccccEEEEEEeecC-CEEEEEeC-C---eEEEEEccCCCCCeeeee-cccccccccccccccCCccceeeEEEe
Q 010287 333 RSFFTEIIASISDIKFARNG-RHILSRDY-M---TLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLS 406 (513)
Q Consensus 333 ~~~~~~~~~~v~~i~~sp~~-~~l~~~~~-~---~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s 406 (513)
..+|...+.+++|+|++ .+++++++ + .|++||++....++..+. +|... |++++|+
T Consensus 210 ---~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~---------------v~~~~~s 271 (416)
T 2pm9_A 210 ---NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG---------------ILSLDWC 271 (416)
T ss_dssp ---SSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC---------------EEEEEEC
T ss_pred ---ccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc---------------eeEEEeC
Confidence 12345789999999997 57888775 6 999999997446667776 66654 5599999
Q ss_pred C-CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCC-CceeeecCCCeEEEecCCCCCccccC------
Q 010287 407 G-DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVVRRVKGADNSALDAN------ 478 (513)
Q Consensus 407 ~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~------ 478 (513)
| ++++|++++.||.|++||+.++ .....+..|..++.+++|+|++ .+|++++.|+.|++.+..........
T Consensus 272 ~~~~~~l~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~ 350 (416)
T 2pm9_A 272 HQDEHLLLSSGRDNTVLLWNPESA-EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETK 350 (416)
T ss_dssp SSCSSCEEEEESSSEEEEECSSSC-CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC------
T ss_pred CCCCCeEEEEeCCCCEEEeeCCCC-ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccccccccc
Confidence 9 9999999999999999999987 4557888999999999999999 89999999999999211111000000
Q ss_pred --------------------------CccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 479 --------------------------GNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 479 --------------------------~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
.....|..++..++|+|+|++||+++ ++.+.||.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 351 QQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITN 411 (416)
T ss_dssp ----------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred ccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence 00011567888999999999999998 66788885
No 20
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.4e-40 Score=357.29 Aligned_cols=403 Identities=13% Similarity=0.109 Sum_probs=297.8
Q ss_pred ccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceE
Q 010287 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (513)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (513)
....|++... + ......+|.+.|++++|+|+|++||+|+.||.|+|||+.+++.
T Consensus 638 ~i~vw~~~~~--~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~----------------------- 691 (1249)
T 3sfz_A 638 TLQVFKAETG--E-KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL----------------------- 691 (1249)
T ss_dssp CEEEEETTTC--C-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------------
T ss_pred eEEEEECCCC--C-EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce-----------------------
Confidence 3456766541 1 1223457999999999999999999999999999999877653
Q ss_pred eccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcc
Q 010287 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (513)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (513)
...+.+|. ..|.+++|+|..++..+++++.|+.|++||+.++++......+. .
T Consensus 692 ~~~~~~~~------------~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~---------------~ 744 (1249)
T 3sfz_A 692 VHTYDEHS------------EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT---------------N 744 (1249)
T ss_dssp EEEEECCS------------SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS---------------S
T ss_pred EEEEcCCC------------CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC---------------C
Confidence 35567888 88999999876677789999999999999999987665544322 1
Q ss_pred cccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCccc---------------------------------
Q 010287 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNL--------------------------------- 219 (513)
Q Consensus 173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------------------------------- 219 (513)
....++|+|+|..+ ++++.++.+++|++.......
T Consensus 745 ~v~~~~~sp~~~~l------------~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1249)
T 3sfz_A 745 SVNHCRFSPDDELL------------ASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK 812 (1249)
T ss_dssp CEEEEEECSSTTEE------------EEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSE
T ss_pred CEEEEEEecCCCEE------------EEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCE
Confidence 23367888888876 777888889999876542211
Q ss_pred ---------------ccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCC
Q 010287 220 ---------------VAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 283 (513)
Q Consensus 220 ---------------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (513)
..........+|...|.+++|+|+++.++++ .++.|++||+.++.... .+.+|...
T Consensus 813 l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~--------~~~~h~~~ 884 (1249)
T 3sfz_A 813 IIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVA--------DCRGHLSW 884 (1249)
T ss_dssp EEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEE--------EECCCSSC
T ss_pred EEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceee--------ecCCCccc
Confidence 0111222334788999999999999999999 79999999999765443 45789999
Q ss_pred eEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccc-------------------------ceeeccccCCCCcccccc
Q 010287 284 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH-------------------------SKLFEEQEAPGTRSFFTE 338 (513)
Q Consensus 284 i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~ 338 (513)
|.+++|+|++ ..|++++.||.|++||+.+....... ...+.... ......
T Consensus 885 v~~v~~spdg-~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 959 (1249)
T 3sfz_A 885 VHGVMFSPDG-SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKT----GQIDYL 959 (1249)
T ss_dssp EEEEEECTTS-SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESS----CCEEEE
T ss_pred eEEEEECCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCc----ceEEEc
Confidence 9999999998 89999999999999998653211000 00000000 001122
Q ss_pred ccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC
Q 010287 339 IIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 417 (513)
Q Consensus 339 ~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 417 (513)
+...+.+++|+|+++++++|+. |.|++||+.. +.....+.+|...+ ++++|+|++++|++++.
T Consensus 960 ~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~-~~~~~~~~~h~~~v---------------~~l~~s~dg~~l~s~~~ 1023 (1249)
T 3sfz_A 960 PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-NRVFSSGVGHKKAV---------------RHIQFTADGKTLISSSE 1023 (1249)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCCEEEETTT-TSCEEECCCCSSCC---------------CCEEECSSSSCEEEECS
T ss_pred ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC-CceeeecccCCCce---------------EEEEECCCCCEEEEEcC
Confidence 3467999999999999999886 9999999986 77777777776542 35666666666666666
Q ss_pred CCcEEEEecCCCC---------------------------------------ccceeecCCCCceeEEEEcCCCCceeee
Q 010287 418 SNLFRVFGCSEGS---------------------------------------AESTTLEASKNPMRRQVQTPSRPSRPLG 458 (513)
Q Consensus 418 dg~i~vwd~~~~~---------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 458 (513)
||.|++||+.++. .....+.+|..++.+++++|++++++++
T Consensus 1024 dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 1103 (1249)
T 3sfz_A 1024 DSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSST 1103 (1249)
T ss_dssp SSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEE
T ss_pred CCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEE
Confidence 6666666554421 2334566788899999999999999999
Q ss_pred cCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 459 SLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 459 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
+.|+.|++ |+............|...|++++|+|++++||+++ ++.+++|+
T Consensus 1104 s~d~~v~i---wd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A 1104 SADKTAKI---WSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp CCSSCCCE---ECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred cCCCcEEE---EECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 99999999 44332233344556899999999999999999888 55688886
No 21
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2e-39 Score=297.49 Aligned_cols=286 Identities=19% Similarity=0.327 Sum_probs=236.9
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
...+|.+.|++++|+|++++||+|+.||.|+||+..+++ ....+.+|.
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-----------------------~~~~~~~h~--------- 65 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----------------------FEKTISGHK--------- 65 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------------------EEEEECCCS---------
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-----------------------cchhhccCC---------
Confidence 456899999999999999999999999999999976554 334567888
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
..|.+++|+| ++.+|++++.|+.|++||+.+++....
T Consensus 66 ---~~v~~~~~~~--~~~~l~s~~~d~~i~vwd~~~~~~~~~-------------------------------------- 102 (312)
T 4ery_A 66 ---LGISDVAWSS--DSNLLVSASDDKTLKIWDVSSGKCLKT-------------------------------------- 102 (312)
T ss_dssp ---SCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEE--------------------------------------
T ss_pred ---CceEEEEEcC--CCCEEEEECCCCEEEEEECCCCcEEEE--------------------------------------
Confidence 8899999965 778999999999999999987754332
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~ 268 (513)
+.+|...|.+++|+|++++|+++ .|+.|++||+++++...
T Consensus 103 --------------------------------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~- 143 (312)
T 4ery_A 103 --------------------------------------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK- 143 (312)
T ss_dssp --------------------------------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE-
T ss_pred --------------------------------------EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE-
Confidence 35677889999999999999998 79999999998765443
Q ss_pred ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 348 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 348 (513)
.+..|...|.+++|+|++ .+|++++.||.|++||+++++.. ..+. ..+...+..++|
T Consensus 144 -------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~----~~~~-----------~~~~~~~~~~~~ 200 (312)
T 4ery_A 144 -------TLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCL----KTLI-----------DDDNPPVSFVKF 200 (312)
T ss_dssp -------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EEEC-----------CSSCCCEEEEEE
T ss_pred -------EecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcee----eEEe-----------ccCCCceEEEEE
Confidence 456788999999999998 89999999999999999887642 2221 123357999999
Q ss_pred eecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287 349 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 427 (513)
Q Consensus 349 sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 427 (513)
+|++++|++++. +.|++||++. ++.+..+.+|...... +......+++.+|++|+.||.|++||+.
T Consensus 201 ~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 201 SPNGKYILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYC------------IFANFSVTGGKWIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp CTTSSEEEEEETTTEEEEEETTT-TEEEEEECSSCCSSSC------------CCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred CCCCCEEEEEcCCCeEEEEECCC-CcEEEEEEecCCceEE------------EEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence 999999999875 9999999996 7777777776543211 1123334678999999999999999999
Q ss_pred CCCccceeecCCCCceeEEEEcCCCCceeeec--CCCeEEE
Q 010287 428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGS--LSGVVRR 466 (513)
Q Consensus 428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~ 466 (513)
++ .....+.+|...+..++++|+++++++++ .|+.|++
T Consensus 268 ~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~ 307 (312)
T 4ery_A 268 TK-EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 307 (312)
T ss_dssp TC-CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEE
T ss_pred Cc-hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEE
Confidence 77 55588899999999999999999999986 6999998
No 22
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.2e-39 Score=299.34 Aligned_cols=285 Identities=14% Similarity=0.197 Sum_probs=230.3
Q ss_pred ccccccccEEEEEEcCCC-CEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287 30 EEVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (513)
...+|.+.|++++|+|++ ++|++|+.|++|++|++.+.... .......+.+|.
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~------------------~~~~~~~~~~h~-------- 65 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK------------------FGVPVRSFKGHS-------- 65 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE------------------EEEEEEEEECCS--------
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc------------------ccccceEEeCCc--------
Confidence 456899999999999975 89999999999999998654320 112345678898
Q ss_pred ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (513)
Q Consensus 109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 188 (513)
..|.+++|+| ++.+|++++.|++|++||+.+++....
T Consensus 66 ----~~v~~~~~s~--dg~~l~s~s~D~~v~~wd~~~~~~~~~------------------------------------- 102 (319)
T 3frx_A 66 ----HIVQDCTLTA--DGAYALSASWDKTLRLWDVATGETYQR------------------------------------- 102 (319)
T ss_dssp ----SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEE-------------------------------------
T ss_pred ----ccEEEEEECC--CCCEEEEEeCCCEEEEEECCCCCeeEE-------------------------------------
Confidence 8899999954 888999999999999999998764332
Q ss_pred ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287 189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 267 (513)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~ 267 (513)
+.+|...|.+++|+|++++|++| .|++|++||++. ....
T Consensus 103 ---------------------------------------~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~ 142 (319)
T 3frx_A 103 ---------------------------------------FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLA 142 (319)
T ss_dssp ---------------------------------------EECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEE
T ss_pred ---------------------------------------EccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEE
Confidence 35788899999999999999998 799999999973 2222
Q ss_pred eecccCccccccccCCeEEEEEeCCC-----CeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccccccccc
Q 010287 268 NIVDVKPANMEDLTEVITSAEFHPTH-----CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 342 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (513)
.+.+|...|.++.|.|.. ...+++++.|+.|++||+++.+. ... +.+|...
T Consensus 143 --------~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~------------~~~h~~~ 198 (319)
T 3frx_A 143 --------TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI----EAD------------FIGHNSN 198 (319)
T ss_dssp --------EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE----EEE------------ECCCCSC
T ss_pred --------EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh----hee------------ecCCCCc
Confidence 457899999999999853 14899999999999999987654 222 3456689
Q ss_pred EEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcE
Q 010287 343 ISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 421 (513)
Q Consensus 343 v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 421 (513)
|.+++|+|++++|++++. +.|++||+.. ++.+..+..+.. +.+++|+|++.+|++++.+ .+
T Consensus 199 v~~~~~sp~g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~----------------v~~~~~sp~~~~la~~~~~-~i 260 (319)
T 3frx_A 199 INTLTASPDGTLIASAGKDGEIMLWNLAA-KKAMYTLSAQDE----------------VFSLAFSPNRYWLAAATAT-GI 260 (319)
T ss_dssp EEEEEECTTSSEEEEEETTCEEEEEETTT-TEEEEEEECCSC----------------EEEEEECSSSSEEEEEETT-EE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCc----------------EEEEEEcCCCCEEEEEcCC-Cc
Confidence 999999999999999875 9999999996 777766654432 4589999999999988765 59
Q ss_pred EEEecCCCCccceee--------cCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 422 RVFGCSEGSAESTTL--------EASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 422 ~vwd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
++|++.... ....+ ..+...+.+++|+|++++|++|+.|+.|++
T Consensus 261 ~v~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~v 312 (319)
T 3frx_A 261 KVFSLDPQY-LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312 (319)
T ss_dssp EEEEETTEE-EEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEEeCcCe-eeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEE
Confidence 999988652 22222 234567889999999999999999999999
No 23
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.6e-40 Score=312.96 Aligned_cols=303 Identities=12% Similarity=0.145 Sum_probs=236.4
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
...+|.+.|++++|+|++++||+|+.||+|+|||..+++. ...+.+|.
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~-----------------------~~~~~~h~--------- 108 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK-----------------------THAIKLHC--------- 108 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-----------------------EEEEECCC---------
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-----------------------ceEEecCC---------
Confidence 4568999999999999999999999999999999876553 24567787
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
..|.+++|+| ++.+|++++.|+.+++|++........ .
T Consensus 109 ---~~v~~~~~s~--~g~~las~~~d~~v~iw~~~~~~~~~~--------------------------------~----- 146 (380)
T 3iz6_a 109 ---PWVMECAFAP--NGQSVACGGLDSACSIFNLSSQADRDG--------------------------------N----- 146 (380)
T ss_dssp ---TTCCCCEECT--TSSEEEECCSSSCCEEEECCCCSSCCC--------------------------------S-----
T ss_pred ---CCEEEEEECC--CCCEEEEeeCCCcEEEEECCCCccccC--------------------------------C-----
Confidence 7899999955 788999999999999999975421000 0
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CCEEEEE-cCCeEEEEEcCCCccee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSF 267 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~vwd~~~~~~~~ 267 (513)
. .....+.+|...|.++.|.|+ +..|++| .|++|++||+++++...
T Consensus 147 -----------------~---------------~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 147 -----------------M---------------PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp -----------------S---------------TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEE
T ss_pred -----------------c---------------cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEE
Confidence 0 000014688899999999996 4568888 79999999999776543
Q ss_pred eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287 268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 347 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 347 (513)
.+. .....+|...|.++.|++.++++|++|+.|+.|++||++..... +.. +.+|.+.|.+++
T Consensus 195 ~~~---~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~---~~~------------~~~h~~~v~~v~ 256 (380)
T 3iz6_a 195 IFG---SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA---VRT------------YHGHEGDINSVK 256 (380)
T ss_dssp EEC---CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCC---CEE------------ECCCSSCCCEEE
T ss_pred Eee---cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcc---eEE------------ECCcCCCeEEEE
Confidence 221 01225789999999998843489999999999999999753221 222 455668899999
Q ss_pred EeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEec
Q 010287 348 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 426 (513)
Q Consensus 348 ~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 426 (513)
|+|++++|++|++ ++|++||+++ ++.+..+..+..... .....+++++|+|+|++|++|+.||.|++||+
T Consensus 257 ~~p~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~ 327 (380)
T 3iz6_a 257 FFPDGQRFGTGSDDGTCRLFDMRT-GHQLQVYNREPDRND--------NELPIVTSVAFSISGRLLFAGYSNGDCYVWDT 327 (380)
T ss_dssp ECTTSSEEEEECSSSCEEEEETTT-TEEEEEECCCCSSSC--------CSSCSCSEEEECSSSSEEEEECTTSCEEEEET
T ss_pred EecCCCeEEEEcCCCeEEEEECCC-CcEEEEecccccccc--------cccCceEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 9999999999875 9999999996 766666654432110 01112458999999999999999999999999
Q ss_pred CCCCccceee----cCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 427 SEGSAESTTL----EASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 427 ~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.++... ..+ .+|...|.+++|+|++++|++|+.|+.|++
T Consensus 328 ~~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~i 370 (380)
T 3iz6_a 328 LLAEMV-LNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKI 370 (380)
T ss_dssp TTCCEE-EEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEE
T ss_pred CCCceE-EEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEE
Confidence 877433 333 689999999999999999999999999999
No 24
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-39 Score=311.91 Aligned_cols=338 Identities=16% Similarity=0.206 Sum_probs=253.5
Q ss_pred ccccccccEEEEEEcCCCC-EEEeecCCCcEEEEEe----eCCCCCCCccCccccccccccCCCcceEeccccCCCCccc
Q 010287 30 EEVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFER----TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD 104 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~-~latg~~dg~i~iw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 104 (513)
....|.+.|++++|+|+|+ +||+|+.||.|++|++ .+++.. -.+ .+...+...+.+|.
T Consensus 40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~----~~~---------~~~~~~~~~~~~~~---- 102 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKY----WKL---------TIIAELRHPFALSA---- 102 (425)
T ss_dssp EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------C----EEE---------EEEEEEECCCCCC-----
T ss_pred eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccc----ccc---------cccccccccccccc----
Confidence 4556779999999999999 9999999999999999 655410 000 00111122222220
Q ss_pred ccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCC
Q 010287 105 YLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (513)
Q Consensus 105 ~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 184 (513)
....+...|++++|+| ++.+|++++.||.|++||. +++....
T Consensus 103 --~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~~~-~~~~~~~--------------------------------- 144 (425)
T 1r5m_A 103 --SSGKTTNQVTCLAWSH--DGNSIVTGVENGELRLWNK-TGALLNV--------------------------------- 144 (425)
T ss_dssp -------CBCEEEEEECT--TSSEEEEEETTSCEEEEET-TSCEEEE---------------------------------
T ss_pred --cccCCCCceEEEEEcC--CCCEEEEEeCCCeEEEEeC-CCCeeee---------------------------------
Confidence 0000117899999965 7889999999999999993 3322211
Q ss_pred ccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCC
Q 010287 185 CGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 263 (513)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~ 263 (513)
+.+|...|.+++|+|++++|+++ .|+.|++||++++
T Consensus 145 -------------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 181 (425)
T 1r5m_A 145 -------------------------------------------LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG 181 (425)
T ss_dssp -------------------------------------------ECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT
T ss_pred -------------------------------------------ccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC
Confidence 34677889999999999999998 7999999999876
Q ss_pred cceeeecccCccccccccCC---------------eEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecccc
Q 010287 264 NQSFNIVDVKPANMEDLTEV---------------ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 328 (513)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~---------------i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 328 (513)
+.... +..+... +.++.|+|++ .+++++.||.|++||++++.. ...
T Consensus 182 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~----~~~----- 242 (425)
T 1r5m_A 182 TVMQH--------FELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTP----TGK----- 242 (425)
T ss_dssp EEEEE--------ECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSC----SEE-----
T ss_pred cEEEE--------eeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCce----eee-----
Confidence 54432 2233333 8899999986 588999999999999988654 222
Q ss_pred CCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC
Q 010287 329 APGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 407 (513)
Q Consensus 329 ~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 407 (513)
+..|...|.+++|+|++++|++++. +.|++||++. ++.+..+..|... +.+++|+|
T Consensus 243 -------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~~~ 299 (425)
T 1r5m_A 243 -------LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNSQNCFYGHSQS---------------IVSASWVG 299 (425)
T ss_dssp -------ECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-BSCSEEECCCSSC---------------EEEEEEET
T ss_pred -------eccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CccceEecCCCcc---------------EEEEEECC
Confidence 2345578999999999999999875 9999999996 7777777766654 45899999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccc-----------
Q 010287 408 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALD----------- 476 (513)
Q Consensus 408 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~----------- 476 (513)
++ ++++++.|+.|++||+.++ .....+..|..++..+.|+|++++|++++.||.|++ |+.....
T Consensus 300 ~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i---~~~~~~~~~~~~~~~~~~ 374 (425)
T 1r5m_A 300 DD-KVISCSMDGSVRLWSLKQN-TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNV---YDLKKLNSKSRSLYGNRD 374 (425)
T ss_dssp TT-EEEEEETTSEEEEEETTTT-EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEE---EECHHHHC----------
T ss_pred CC-EEEEEeCCCcEEEEECCCC-cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEE---EECCCCccceeeeecccc
Confidence 99 9999999999999999877 455778889999999999999999999999999999 2222111
Q ss_pred ---------cCCccccccC--CeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 477 ---------ANGNAFDFSM--KLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 477 ---------~~~~~~~~~~--~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
.......|.. .|++++|+|++++|++++ ++.+.+|.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 375 GILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA 422 (425)
T ss_dssp ----CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred cccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEe
Confidence 2223334655 999999999999998777 66688886
No 25
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.5e-39 Score=323.40 Aligned_cols=388 Identities=12% Similarity=0.113 Sum_probs=284.3
Q ss_pred cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
...|.+.|++++|+|+|++||+++ ++.|+||++.++.. .......+.+|.
T Consensus 14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-------------------~~~~~~~~~~h~---------- 63 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-------------------KVPPVVQFTGHG---------- 63 (615)
T ss_dssp CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-------------------SSCSEEEECTTT----------
T ss_pred CCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-------------------ccccceEEecCC----------
Confidence 346889999999999999999998 78999999886511 001235577888
Q ss_pred cccc-ceeEEEeecCCCceEEEeecCCeEEEEEccCc------eeeeeeccccCCCcccCCCCcccCcccccCceeccCC
Q 010287 111 IEEK-INKIRWCQSANSALYLLSTNDKTIKLWKVQEK------KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (513)
Q Consensus 111 ~~~~-i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 183 (513)
.. |++++|+|..++.+|++++.||.|++||+.++ .......+..+. .....++|+|+|
T Consensus 64 --~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~-------------~~v~~~~~s~~~ 128 (615)
T 1pgu_A 64 --SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA-------------GPISDISWDFEG 128 (615)
T ss_dssp --TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS-------------SCEEEEEECTTS
T ss_pred --CceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhccc-------------ccEEEEEEeCCC
Confidence 88 99999955227789999999999999999765 323332222221 123377899999
Q ss_pred CccccccCCCCCCCCcCCCCC----CceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCC-EEEEE-cCCeEEE
Q 010287 184 GCGERNFGCASNDSSFPPGGV----SSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINL 257 (513)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~v 257 (513)
+.+ ++++.+ +.+.+|+... ... .+.+|...|.+++|+|+++ .++++ .|+.|++
T Consensus 129 ~~l------------~~~~~~~~~~~~v~~~d~~~--------~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~v 187 (615)
T 1pgu_A 129 RRL------------CVVGEGRDNFGVFISWDSGN--------SLG-EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVF 187 (615)
T ss_dssp SEE------------EEEECCSSCSEEEEETTTCC--------EEE-ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEE
T ss_pred CEE------------EEeccCCCCccEEEEEECCC--------cce-eeecCCccEEEEEECCCCCcEEEEEeCCCcEEE
Confidence 876 444444 6888888321 222 2468999999999999998 68887 7999999
Q ss_pred EEcCCCcceeeecccCccccccccC---CeEEEEEeCC-CCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCc
Q 010287 258 WNLEISNQSFNIVDVKPANMEDLTE---VITSAEFHPT-HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 333 (513)
Q Consensus 258 wd~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 333 (513)
||+.+.+... .+..|.. .|.+++|+|+ + ++|++++.||.|++||+++++. +..+...
T Consensus 188 wd~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~------ 248 (615)
T 1pgu_A 188 YQGPPFKFSA--------SDRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEF----LKYIEDD------ 248 (615)
T ss_dssp EETTTBEEEE--------EECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCE----EEECCBT------
T ss_pred EeCCCcceee--------eecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCE----eEEeccc------
Confidence 9998665433 4567888 9999999999 7 8999999999999999988765 2222100
Q ss_pred cccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecc-------------------------------
Q 010287 334 SFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVH------------------------------- 381 (513)
Q Consensus 334 ~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~------------------------------- 381 (513)
...|...|.+++|+ ++++|++++. +.|++||+++ ++.+..+..+
T Consensus 249 --~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~ 324 (615)
T 1pgu_A 249 --QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 324 (615)
T ss_dssp --TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT-TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEE
T ss_pred --ccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEE
Confidence 01455789999999 9999998775 9999999875 4333332222
Q ss_pred --------------ccccccc-----------------------------------------c-----------------
Q 010287 382 --------------EHLRPKL-----------------------------------------C----------------- 389 (513)
Q Consensus 382 --------------~~~~~~~-----------------------------------------~----------------- 389 (513)
...+..+ .
T Consensus 325 d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~ 404 (615)
T 1pgu_A 325 ELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHE 404 (615)
T ss_dssp ETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEE
T ss_pred ECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCc
Confidence 0000000 0
Q ss_pred -------------------------------------------------------------c---------------ccc
Q 010287 390 -------------------------------------------------------------D---------------LYE 393 (513)
Q Consensus 390 -------------------------------------------------------------~---------------~~~ 393 (513)
+ ...
T Consensus 405 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~ 484 (615)
T 1pgu_A 405 FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLK 484 (615)
T ss_dssp CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECS
T ss_pred ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCcccccccc
Confidence 0 000
Q ss_pred cCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecC-CCCceeEEEEcC----------CCCceeeecCCC
Q 010287 394 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-SKNPMRRQVQTP----------SRPSRPLGSLSG 462 (513)
Q Consensus 394 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~----------~~~~l~~~~~d~ 462 (513)
......|++++|+|++++|++++.||.|++||+.++ .....+.+ |..++.+++|+| ++++|++++.|+
T Consensus 485 ~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg 563 (615)
T 1pgu_A 485 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR-EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 563 (615)
T ss_dssp SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS
T ss_pred CCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC-cceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCC
Confidence 001124778999999999999999999999999987 44456666 999999999999 999999999999
Q ss_pred eEEEecCCCCCcc-ccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 463 VVRRVKGADNSAL-DANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 463 ~i~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
.|++ |+.... ........|...|++++|+|+++ |++++ ++.+++|+
T Consensus 564 ~i~i---w~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 564 NIFI---YSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 611 (615)
T ss_dssp CEEE---EESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred cEEE---EECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence 9999 333321 12223446899999999999999 88776 66788986
No 26
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.2e-39 Score=304.13 Aligned_cols=298 Identities=16% Similarity=0.299 Sum_probs=226.5
Q ss_pred ccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcc------cc
Q 010287 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEF------DY 105 (513)
Q Consensus 32 ~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~------~~ 105 (513)
.+|.+.|+|++|+|+|++||+|+ ++.++||++.+++.. ..+..|.... ..
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~-----------------------~~l~~~~~~~~~~~~~~~ 116 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV-----------------------ARLSDDSAANKDPENLNT 116 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE-----------------------EEECC-------------
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEE-----------------------EEecCccccccccccccc
Confidence 46999999999999999999987 678999998776532 1111111000 00
Q ss_pred cccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCc
Q 010287 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (513)
Q Consensus 106 ~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 185 (513)
.........|.+++|+| ++.+|++++.|++|++||+.+++....
T Consensus 117 ~~~~~~~~~v~~v~~s~--dg~~l~s~~~d~~i~iwd~~~~~~~~~---------------------------------- 160 (393)
T 1erj_A 117 SSSPSSDLYIRSVCFSP--DGKFLATGAEDRLIRIWDIENRKIVMI---------------------------------- 160 (393)
T ss_dssp ----CCCCBEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEE----------------------------------
T ss_pred cccCCCceeEEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEE----------------------------------
Confidence 00001114589999955 888999999999999999988764332
Q ss_pred cccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCc
Q 010287 186 GERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 264 (513)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~ 264 (513)
+.+|...|.+++|+|++++|+++ .|++|++||+++++
T Consensus 161 ------------------------------------------~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~ 198 (393)
T 1erj_A 161 ------------------------------------------LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 198 (393)
T ss_dssp ------------------------------------------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred ------------------------------------------EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe
Confidence 35788889999999999999998 79999999998765
Q ss_pred ceeeecccCccccccccCCeEEEEEeC-CCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccE
Q 010287 265 QSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 343 (513)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 343 (513)
.... ..+...+.+++|+| ++ .+|++++.|+.|++||++++... ..+.... ....+|...|
T Consensus 199 ~~~~---------~~~~~~v~~~~~~~~~~-~~l~~~s~d~~v~iwd~~~~~~~----~~~~~~~-----~~~~~h~~~v 259 (393)
T 1erj_A 199 CSLT---------LSIEDGVTTVAVSPGDG-KYIAAGSLDRAVRVWDSETGFLV----ERLDSEN-----ESGTGHKDSV 259 (393)
T ss_dssp EEEE---------EECSSCEEEEEECSTTC-CEEEEEETTSCEEEEETTTCCEE----EEEC-----------CCCSSCE
T ss_pred eEEE---------EEcCCCcEEEEEECCCC-CEEEEEcCCCcEEEEECCCCcEE----Eeecccc-----cCCCCCCCCE
Confidence 4432 22566799999999 66 99999999999999999887652 2222111 1135677899
Q ss_pred EEEEEeecCCEEEEEeC-CeEEEEEccCCC-----------CCeeeeecccccccccccccccCCccceeeEEEeCCCCE
Q 010287 344 SDIKFARNGRHILSRDY-MTLKLWDINMDS-----------GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 411 (513)
Q Consensus 344 ~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 411 (513)
.+++|+|++++|++|+. +.|++||++... .....+.+|... |++++|+|++++
T Consensus 260 ~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~~~~~~~~~~ 324 (393)
T 1erj_A 260 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF---------------VLSVATTQNDEY 324 (393)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSC---------------EEEEEECGGGCE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCc---------------EEEEEECCCCCE
Confidence 99999999999999875 999999997521 122333444433 568999999999
Q ss_pred EEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcC------CCCceeeecCCCeEEE
Q 010287 412 VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP------SRPSRPLGSLSGVVRR 466 (513)
Q Consensus 412 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~~d~~i~~ 466 (513)
|++|+.|+.|++||+.++ .....+.+|...|.++++++ ++++|++|+.|+.|++
T Consensus 325 l~sgs~D~~v~iwd~~~~-~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~i 384 (393)
T 1erj_A 325 ILSGSKDRGVLFWDKKSG-NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 384 (393)
T ss_dssp EEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEE
T ss_pred EEEEeCCCeEEEEECCCC-eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEE
Confidence 999999999999999987 45578899999999999876 6889999999999999
No 27
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.8e-38 Score=292.65 Aligned_cols=291 Identities=18% Similarity=0.263 Sum_probs=226.0
Q ss_pred ccccccccEEEEEE-----cC-CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcc
Q 010287 30 EEVQEVDIISAIEF-----DK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEF 103 (513)
Q Consensus 30 ~~~~h~~~V~~v~~-----sp-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 103 (513)
...+|.+.|++++| ++ ++++||+|+.|++|+||++...+... ........+.+|.
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~----------------~~~~~~~~l~~h~--- 76 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG----------------YFGIPHKALTGHN--- 76 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS----------------BSEEEEEEECCCS---
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc----------------ccccccchhccCC---
Confidence 45689999999999 77 89999999999999999987544210 0112335578888
Q ss_pred cccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCC
Q 010287 104 DYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (513)
Q Consensus 104 ~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 183 (513)
..|.+++|+| ++.++++++.|++|++||+++++....
T Consensus 77 ---------~~V~~~~~~~--~~~~l~s~s~D~~v~lwd~~~~~~~~~-------------------------------- 113 (343)
T 2xzm_R 77 ---------HFVSDLALSQ--ENCFAISSSWDKTLRLWDLRTGTTYKR-------------------------------- 113 (343)
T ss_dssp ---------SCEEEEEECS--STTEEEEEETTSEEEEEETTSSCEEEE--------------------------------
T ss_pred ---------CceEEEEECC--CCCEEEEEcCCCcEEEEECCCCcEEEE--------------------------------
Confidence 8899999965 778999999999999999988754321
Q ss_pred CccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCC
Q 010287 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 262 (513)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~ 262 (513)
+.+|...|.+++|+|++++|+++ .|++|++||+..
T Consensus 114 --------------------------------------------~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~ 149 (343)
T 2xzm_R 114 --------------------------------------------FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG 149 (343)
T ss_dssp --------------------------------------------EECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred --------------------------------------------EcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC
Confidence 35788899999999999999998 799999999973
Q ss_pred CcceeeecccCccccccccCCeEEEEEeCCCC---------eEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCc
Q 010287 263 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHC---------NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 333 (513)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 333 (513)
...... .....|...|.+++|+|++. .+|++++.|+.|++||... .. ...
T Consensus 150 -~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~----~~~---------- 208 (343)
T 2xzm_R 150 -ECKFSS-----AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QI----RYT---------- 208 (343)
T ss_dssp -CEEEEC-----CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EE----EEE----------
T ss_pred -Cceeee-----ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ce----eEE----------
Confidence 222211 12347889999999999852 5899999999999999432 21 222
Q ss_pred cccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEE
Q 010287 334 SFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 412 (513)
Q Consensus 334 ~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 412 (513)
+.+|...|.+++|+|++++|++|+. +.|++||+.....+...+.. ... |.+++|+|+++++
T Consensus 209 --~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~~---------------v~~v~~sp~~~~l 270 (343)
T 2xzm_R 209 --FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA-GST---------------INQIAFNPKLQWV 270 (343)
T ss_dssp --EECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEEC-SSC---------------EEEEEECSSSCEE
T ss_pred --EcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecC-CCc---------------EEEEEECCCCCEE
Confidence 3456688999999999999999875 99999999543444443321 111 4589999999988
Q ss_pred EEEeCCCcEEEEecCCCCccc-eeec-----------CCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 413 ATGSYSNLFRVFGCSEGSAES-TTLE-----------ASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 413 ~~~~~dg~i~vwd~~~~~~~~-~~~~-----------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
+++ .|+.|++|++.++.... ..+. +|...+.+++|+|++++|++|+.||.|++
T Consensus 271 a~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~ 335 (343)
T 2xzm_R 271 AVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRT 335 (343)
T ss_dssp EEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEE
T ss_pred EEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEE
Confidence 755 57789999998764322 1232 67788999999999999999999999999
No 28
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2e-39 Score=302.36 Aligned_cols=244 Identities=10% Similarity=0.102 Sum_probs=187.6
Q ss_pred ccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEE
Q 010287 229 HAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 308 (513)
Q Consensus 229 ~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v 308 (513)
.+|...|.+++|+|++++++++.||+|++||+.+++..... .....+|...|++++|+|++ ++|++++.|+.|++
T Consensus 91 ~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~----~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~i 165 (357)
T 4g56_B 91 VQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVN----KFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKV 165 (357)
T ss_dssp EECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCC----CEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEE
T ss_pred CCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEE----eeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEE
Confidence 46778899999999988777668999999999876543211 11345789999999999999 99999999999999
Q ss_pred EEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC-EEEEEe-CCeEEEEEccCCCCCeeeeeccccccc
Q 010287 309 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP 386 (513)
Q Consensus 309 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~-~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~ 386 (513)
||+++++. ... +.+|...|.+++|+|++. ++++++ |+.|++||+++ +++...+..+....
T Consensus 166 wd~~~~~~----~~~------------~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~~- 227 (357)
T 4g56_B 166 WDLSQKAV----LKS------------YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK-PKPATRIDFCASDT- 227 (357)
T ss_dssp EETTTTEE----EEE------------ECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS-SSCBCBCCCTTCCS-
T ss_pred EECCCCcE----EEE------------EcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC-Cceeeeeeeccccc-
Confidence 99988765 233 345668899999999875 667766 59999999986 66555444322211
Q ss_pred ccccccccCCccceeeEEEeCCC-CEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCC-CceeeecCCCeE
Q 010287 387 KLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVV 464 (513)
Q Consensus 387 ~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i 464 (513)
.+++++|+|++ .+|++|+.|+.|++||+.++ .....+.+|..+|.+++|+|++ ++||+|+.|+.|
T Consensus 228 ------------~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i 294 (357)
T 4g56_B 228 ------------IPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTV 294 (357)
T ss_dssp ------------CEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred ------------cccchhhhhcccceEEEeecccceeEEECCCC-cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEE
Confidence 14589999975 68889999999999999987 4557889999999999999987 579999999999
Q ss_pred EEecCCCCCccccCCccccccCCeeEEEEeC-CCCEEEEEc-CCcEEEEe
Q 010287 465 RRVKGADNSALDANGNAFDFSMKLLHLAWHP-SENSIACAA-SNSLYMYY 512 (513)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~la~~~-~~~~~i~~ 512 (513)
++ |+....+ ....++|...|++++|+| ++++||+++ |+.+++|+
T Consensus 295 ~i---wd~~~~~-~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 295 AV---LDADFSE-VFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp EE---ECTTSCE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EE---EECCCCc-EeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 99 4433211 123447999999999999 799999877 77899986
No 29
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-38 Score=294.96 Aligned_cols=299 Identities=15% Similarity=0.216 Sum_probs=229.6
Q ss_pred eEeccccCCCCcccccccccccc-cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCccc
Q 010287 91 RYKTEFQSHEPEFDYLKSLEIEE-KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (513)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~-~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (513)
.....+.+|. . .|.+++|+| ++.+|++++.|++|+|||+.++......
T Consensus 6 ~~~~~~~~h~------------~~~v~~l~~sp--~g~~las~~~D~~i~iw~~~~~~~~~~~----------------- 54 (345)
T 3fm0_A 6 VLLGRVPAHP------------DSRCWFLAWNP--AGTLLASCGGDRRIRIWGTEGDSWICKS----------------- 54 (345)
T ss_dssp EEEEEECCST------------TSCEEEEEECT--TSSCEEEEETTSCEEEEEEETTEEEEEE-----------------
T ss_pred EEeeeecCCC------------CCcEEEEEECC--CCCEEEEEcCCCeEEEEEcCCCcceeee-----------------
Confidence 3556678887 5 899999965 7889999999999999999876532210
Q ss_pred CcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEE
Q 010287 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 249 (513)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 249 (513)
....+|...|.+++|+|++++|++
T Consensus 55 --------------------------------------------------------~~~~~h~~~v~~~~~sp~g~~l~s 78 (345)
T 3fm0_A 55 --------------------------------------------------------VLSEGHQRTVRKVAWSPCGNYLAS 78 (345)
T ss_dssp --------------------------------------------------------EECSSCSSCEEEEEECTTSSEEEE
T ss_pred --------------------------------------------------------eeccccCCcEEEEEECCCCCEEEE
Confidence 112578889999999999999999
Q ss_pred E-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecccc
Q 010287 250 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 328 (513)
Q Consensus 250 ~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 328 (513)
| .|++|++|++........ ..+.+|...|.+++|+|++ ++|++++.|+.|++||++++.... .+..
T Consensus 79 ~s~D~~v~iw~~~~~~~~~~------~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~-~~~~----- 145 (345)
T 3fm0_A 79 ASFDATTCIWKKNQDDFECV------TTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYE-CVSV----- 145 (345)
T ss_dssp EETTSCEEEEEECCC-EEEE------EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEE-EEEE-----
T ss_pred EECCCcEEEEEccCCCeEEE------EEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeE-EEEE-----
Confidence 8 799999999986542211 1567899999999999998 999999999999999998754211 0112
Q ss_pred CCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCC--CeeeeecccccccccccccccCCccceeeEEE
Q 010287 329 APGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFECCL 405 (513)
Q Consensus 329 ~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (513)
+.+|...|.+++|+|++++|++++. +.|++||++. +. ....+.+|... |++++|
T Consensus 146 -------~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~-~~~~~~~~~~~h~~~---------------v~~l~~ 202 (345)
T 3fm0_A 146 -------LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE-DDWVCCATLEGHEST---------------VWSLAF 202 (345)
T ss_dssp -------ECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEET-TEEEEEEEECCCSSC---------------EEEEEE
T ss_pred -------ecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecC-CCEEEEEEecCCCCc---------------eEEEEE
Confidence 3456688999999999999999875 9999999985 43 34566667654 569999
Q ss_pred eCCCCEEEEEeCCCcEEEEecCCCCcc--------------ceeecC-CCCceeEEEEcCCCCceeeecCCCeEEEecCC
Q 010287 406 SGDGGRVATGSYSNLFRVFGCSEGSAE--------------STTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA 470 (513)
Q Consensus 406 s~~~~~l~~~~~dg~i~vwd~~~~~~~--------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~ 470 (513)
+|++++|++++.|+.|++|+....... ...+.+ |...|..++|+|++..|++++.|+.|++....
T Consensus 203 sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~ 282 (345)
T 3fm0_A 203 DPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQED 282 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeC
Confidence 999999999999999999997432211 122333 88899999999999999999999999992111
Q ss_pred --C-CCccc--cCC-ccccccCCeeEEEEeCCC-CEEEEEc-CCcEEEEe
Q 010287 471 --D-NSALD--ANG-NAFDFSMKLLHLAWHPSE-NSIACAA-SNSLYMYY 512 (513)
Q Consensus 471 --~-~~~~~--~~~-~~~~~~~~i~~~~~sp~~-~~la~~~-~~~~~i~~ 512 (513)
. ..... +.. ....|...|++++|+|++ .+||+++ |+.+++|+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 283 PNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332 (345)
T ss_dssp TTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred CCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence 1 11000 000 123588999999999998 4899887 77888986
No 30
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.3e-38 Score=296.66 Aligned_cols=292 Identities=14% Similarity=0.175 Sum_probs=232.9
Q ss_pred EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (513)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (513)
....+.+|. +.|++++|+| ++.+|++++.|++|++||..+++....
T Consensus 56 ~~~~l~gH~------------~~V~~~~~s~--d~~~l~s~s~Dg~v~vWd~~~~~~~~~-------------------- 101 (354)
T 2pbi_B 56 TRRTLKGHG------------NKVLCMDWCK--DKRRIVSSSQDGKVIVWDSFTTNKEHA-------------------- 101 (354)
T ss_dssp EEEEEECCS------------SCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEE--------------------
T ss_pred EEEEecCCC------------CeEEEEEECC--CCCEEEEEeCCCeEEEEECCCCCcceE--------------------
Confidence 445678898 8999999965 778999999999999999887654332
Q ss_pred ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-
Q 010287 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 250 (513)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~- 250 (513)
+..|...|.+++|+|++..|+++
T Consensus 102 --------------------------------------------------------~~~~~~~v~~~~~sp~g~~lasg~ 125 (354)
T 2pbi_B 102 --------------------------------------------------------VTMPCTWVMACAYAPSGCAIACGG 125 (354)
T ss_dssp --------------------------------------------------------EECSSSCCCEEEECTTSSEEEEES
T ss_pred --------------------------------------------------------EecCCCCEEEEEECCCCCEEEEee
Confidence 23455668999999999999999
Q ss_pred cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCC
Q 010287 251 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 330 (513)
Q Consensus 251 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 330 (513)
.|+.+++|++......... .....+..|...|.++.|+|++ ..|++++.|+.|++||+++++. +..
T Consensus 126 ~d~~i~v~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~----~~~------- 191 (354)
T 2pbi_B 126 LDNKCSVYPLTFDKNENMA--AKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQL----LQS------- 191 (354)
T ss_dssp TTSEEEEEECCCCTTCCSG--GGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCE----EEE-------
T ss_pred CCCCEEEEEEecccccccc--ccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeE----EEE-------
Confidence 7999999998754211100 0112456799999999999998 8999999999999999988765 333
Q ss_pred CCccccccccccEEEEEEee--cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC
Q 010287 331 GTRSFFTEIIASISDIKFAR--NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 407 (513)
Q Consensus 331 ~~~~~~~~~~~~v~~i~~sp--~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 407 (513)
+.+|...|.+++|+| ++.+|++|+. +.|++||+++ ++.+..+..|... |.+++|+|
T Consensus 192 -----~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-~~~~~~~~~h~~~---------------v~~v~~~p 250 (354)
T 2pbi_B 192 -----FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQAFETHESD---------------VNSVRYYP 250 (354)
T ss_dssp -----EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECT
T ss_pred -----EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCC---------------eEEEEEeC
Confidence 345567899999988 5789999875 9999999997 8888888888765 55999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCccceeec--CCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCcccccc
Q 010287 408 DGGRVATGSYSNLFRVFGCSEGSAESTTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFS 485 (513)
Q Consensus 408 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~ 485 (513)
++++|++|+.|+.|++||+..+... ..+. .+...+..+.|+|++++|++|+.|+.|++ |+............|.
T Consensus 251 ~~~~l~s~s~D~~v~lwd~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~v---wd~~~~~~~~~l~~h~ 326 (354)
T 2pbi_B 251 SGDAFASGSDDATCRLYDLRADREV-AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINV---WDVLKGSRVSILFGHE 326 (354)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEE-EEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEE---EETTTCSEEEEECCCS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEE-EEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEE---EECCCCceEEEEECCC
Confidence 9999999999999999999876332 3333 33457889999999999999999999999 4332222223445699
Q ss_pred CCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 486 MKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 486 ~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
..|++++|+||+++||+++ ++.+++|.
T Consensus 327 ~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 327 NRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999999888 66688874
No 31
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.6e-39 Score=304.72 Aligned_cols=302 Identities=15% Similarity=0.197 Sum_probs=237.6
Q ss_pred ceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCccc
Q 010287 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (513)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (513)
......+.+|. +.|++++|+| ++.+|++++.|++|++||+.+++....
T Consensus 56 ~~~~~~l~gH~------------~~V~~~~~sp--~~~~l~s~s~D~~v~iWd~~~~~~~~~------------------ 103 (380)
T 3iz6_a 56 LVCCRTLQGHS------------GKVYSLDWTP--EKNWIVSASQDGRLIVWNALTSQKTHA------------------ 103 (380)
T ss_dssp CEEEEEECCCS------------SCEEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEE------------------
T ss_pred eEEeecccccc------------cEEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCccceE------------------
Confidence 34556788998 8999999965 778999999999999999988764432
Q ss_pred CcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEE
Q 010287 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 249 (513)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 249 (513)
+..|...|.+++|+|++++|++
T Consensus 104 ----------------------------------------------------------~~~h~~~v~~~~~s~~g~~las 125 (380)
T 3iz6_a 104 ----------------------------------------------------------IKLHCPWVMECAFAPNGQSVAC 125 (380)
T ss_dssp ----------------------------------------------------------EECCCTTCCCCEECTTSSEEEE
T ss_pred ----------------------------------------------------------EecCCCCEEEEEECCCCCEEEE
Confidence 3467777999999999999999
Q ss_pred E-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecccc
Q 010287 250 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 328 (513)
Q Consensus 250 ~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 328 (513)
| .|+.+++|++.+........ .....+.+|...|.++.|.|+++..|++++.|+.|++||++++.. +..+...
T Consensus 126 ~~~d~~v~iw~~~~~~~~~~~~-~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~----~~~~~~~- 199 (380)
T 3iz6_a 126 GGLDSACSIFNLSSQADRDGNM-PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR----ISIFGSE- 199 (380)
T ss_dssp CCSSSCCEEEECCCCSSCCCSS-TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE----EEEECCC-
T ss_pred eeCCCcEEEEECCCCccccCCc-cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE----EEEeecc-
Confidence 8 79999999997532111000 001256789999999999998657899999999999999998765 2222211
Q ss_pred CCCCccccccccccEEEEEEee-cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEe
Q 010287 329 APGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 406 (513)
Q Consensus 329 ~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 406 (513)
...+|...|.+++|+| ++.+|++|+. +.|++||++.....+..+.+|... |++++|+
T Consensus 200 ------~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~---------------v~~v~~~ 258 (380)
T 3iz6_a 200 ------FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD---------------INSVKFF 258 (380)
T ss_dssp ------SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSC---------------CCEEEEC
T ss_pred ------cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCC---------------eEEEEEe
Confidence 1246778999999987 8899999875 999999998656788888888765 4599999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCccceeecCC-------CCceeEEEEcCCCCceeeecCCCeEEEecCCCCCcccc--
Q 010287 407 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-------KNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDA-- 477 (513)
Q Consensus 407 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~-- 477 (513)
|++++|++|+.||.|++||+.++... ..+..+ ...+.+++|+|++++|++|+.||.|++ |+....+.
T Consensus 259 p~~~~l~s~s~D~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~v---wd~~~~~~~~ 334 (380)
T 3iz6_a 259 PDGQRFGTGSDDGTCRLFDMRTGHQL-QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYV---WDTLLAEMVL 334 (380)
T ss_dssp TTSSEEEEECSSSCEEEEETTTTEEE-EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEE---EETTTCCEEE
T ss_pred cCCCeEEEEcCCCeEEEEECCCCcEE-EEecccccccccccCceEEEEECCCCCEEEEEECCCCEEE---EECCCCceEE
Confidence 99999999999999999999987433 344332 234889999999999999999999999 33221111
Q ss_pred --CCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 478 --NGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 478 --~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
......|...|++++|+|++++||+|+ ++.++||.
T Consensus 335 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 335 NLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA 372 (380)
T ss_dssp EECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred EEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence 111246899999999999999999998 77888986
No 32
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=7e-39 Score=307.00 Aligned_cols=333 Identities=12% Similarity=0.182 Sum_probs=249.8
Q ss_pred ccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (513)
Q Consensus 36 ~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 115 (513)
+.+++++|+|+|++|++|+.||.|++|+..+.+.. ..+..|. .+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~-----------------------~~~~~~~-------------~~ 100 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS-----------------------KMLKRAD-------------YT 100 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETT-----------------------TTSCSCC-------------EE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEeccccee-----------------------eEEecCC-------------ce
Confidence 44568999999999999999999999998765531 2223332 23
Q ss_pred eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCC
Q 010287 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (513)
Q Consensus 116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 195 (513)
....| ++++.+|++++.|+.|++||+.+++....
T Consensus 101 ~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------------------------------------- 134 (420)
T 3vl1_A 101 AVDTA--KLQMRRFILGTTEGDIKVLDSNFNLQREI-------------------------------------------- 134 (420)
T ss_dssp EEEEE--CSSSCEEEEEETTSCEEEECTTSCEEEEE--------------------------------------------
T ss_pred EEEEE--ecCCCEEEEEECCCCEEEEeCCCcceeee--------------------------------------------
Confidence 34456 44778999999999999999987654332
Q ss_pred CCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCc
Q 010287 196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 274 (513)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~ 274 (513)
+.+|...|.+++|+|++++|+++ .|+.|++||+++++...
T Consensus 135 --------------------------------~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~------- 175 (420)
T 3vl1_A 135 --------------------------------DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR------- 175 (420)
T ss_dssp --------------------------------TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE-------
T ss_pred --------------------------------cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce-------
Confidence 24788889999999999999998 79999999998766443
Q ss_pred cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCC------------cccccccccc
Q 010287 275 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT------------RSFFTEIIAS 342 (513)
Q Consensus 275 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 342 (513)
.+.+|...|.+++|+|++ .+|++++.|+.|++||+++++. ...+..+..... ......+...
T Consensus 176 -~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 249 (420)
T 3vl1_A 176 -TLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTT----IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK 249 (420)
T ss_dssp -EEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEE----EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred -EEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCce----eEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence 457899999999999998 8999999999999999998765 333332211000 0011223456
Q ss_pred EEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeee-cccccccccccccccCCccceeeEEEeCCCC-EEEEEeCCC
Q 010287 343 ISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSN 419 (513)
Q Consensus 343 v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg 419 (513)
+.+++|+|++++|++++. |.|++||++. ++.+..+. .|... +++++|+|+++ +|++|+.||
T Consensus 250 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~l~~g~~dg 313 (420)
T 3vl1_A 250 KNNLEFGTYGKYVIAGHVSGVITVHNVFS-KEQTIQLPSKFTCS---------------CNSLTVDGNNANYIYAGYENG 313 (420)
T ss_dssp CCTTCSSCTTEEEEEEETTSCEEEEETTT-CCEEEEECCTTSSC---------------EEEEEECSSCTTEEEEEETTS
T ss_pred ccceEEcCCCCEEEEEcCCCeEEEEECCC-CceeEEcccccCCC---------------ceeEEEeCCCCCEEEEEeCCC
Confidence 666777899999999875 9999999986 55554443 23333 56999999999 999999999
Q ss_pred cEEEEecCCCCccceeecC-CCCceeEEEEcCCCCceeeecCCCeEEEecCCC---CCc---cccCCccccccCCeeEEE
Q 010287 420 LFRVFGCSEGSAESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD---NSA---LDANGNAFDFSMKLLHLA 492 (513)
Q Consensus 420 ~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~---~~~---~~~~~~~~~~~~~i~~~~ 492 (513)
.|++||+.++......+.. |..++..+. .+++++|++++.|+.|++..... +.. .........|...|.+++
T Consensus 314 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 392 (420)
T 3vl1_A 314 MLAQWDLRSPECPVGEFLINEGTPINNVY-FAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFC 392 (420)
T ss_dssp EEEEEETTCTTSCSEEEEESTTSCEEEEE-EETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEE
T ss_pred eEEEEEcCCCcCchhhhhccCCCCceEEE-eCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEE
Confidence 9999999987665566666 667777774 45788999999999999921111 100 011112335788999999
Q ss_pred EeCCCC----EEEEEcCCcEEEEe
Q 010287 493 WHPSEN----SIACAASNSLYMYY 512 (513)
Q Consensus 493 ~sp~~~----~la~~~~~~~~i~~ 512 (513)
|+|+++ ++++++.+.+.+|+
T Consensus 393 ~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 393 YVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp EECCSSSSCEEEEEETTTEEEEEE
T ss_pred EccCCCCcceEEEEcCCceEEEEe
Confidence 999999 77788899898886
No 33
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-38 Score=293.64 Aligned_cols=296 Identities=14% Similarity=0.243 Sum_probs=214.5
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccc-c-CCCCcccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-Q-SHEPEFDYLK 107 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~h~~~~~~~~ 107 (513)
...+|.++|++++|+|+ +||+|+.|++|+||++.++.. .....+ . +|.
T Consensus 9 ~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~---------------------~~~~~~~~~~h~------- 58 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF---------------------TLIDVLDETAHK------- 58 (330)
T ss_dssp EEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC---------------------EEEEEECTTCCC-------
T ss_pred eeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe---------------------EEEEEEecCCcc-------
Confidence 35579999999999998 999999999999999865431 112223 2 377
Q ss_pred cccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (513)
Q Consensus 108 ~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 187 (513)
..|.+++|+| ++.+|++++.|++|++|++........ .
T Consensus 59 -----~~v~~v~~sp--~~~~las~s~D~~v~iw~~~~~~~~~~-~---------------------------------- 96 (330)
T 2hes_X 59 -----KAIRSVAWRP--HTSLLAAGSFDSTVSIWAKEESADRTF-E---------------------------------- 96 (330)
T ss_dssp -----SCEEEEEECT--TSSEEEEEETTSCEEEEEC-------C-C----------------------------------
T ss_pred -----CCEEEEEECC--CCCEEEEEeCCCcEEEEEcccCcCccc-c----------------------------------
Confidence 8899999965 778999999999999999864321000 0
Q ss_pred cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcce
Q 010287 188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 266 (513)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~ 266 (513)
.... ..+.+|...|.+++|+|++++|++| .|++|++||++.....
T Consensus 97 ---------------------------------~~~~-~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~ 142 (330)
T 2hes_X 97 ---------------------------------MDLL-AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE 142 (330)
T ss_dssp ---------------------------------CEEE-EEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC
T ss_pred ---------------------------------ceeE-EEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC
Confidence 0011 1246899999999999999999998 7999999999543322
Q ss_pred eeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEE
Q 010287 267 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 346 (513)
Q Consensus 267 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 346 (513)
.+.+ ..+.+|...|.+++|+|++ .+|++++.|+.|++||.+++.. ..+.. +.+|.+.|.++
T Consensus 143 ~~~~----~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~--~~~~~------------~~~h~~~v~~~ 203 (330)
T 2hes_X 143 YECI----SVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDW--ECVAV------------LNGHEGTVWSS 203 (330)
T ss_dssp CEEE----EEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEE--EEEEE------------ECCCSSCEEEE
T ss_pred eEEE----EEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCe--eEEEE------------ccCCCCcEEEE
Confidence 1111 1457899999999999998 8999999999999999876421 11222 45566899999
Q ss_pred EEeec--CCEEEEEeC-CeEEEEEccCCCC-------Ceeeeec-ccccccccccccccCCccceeeEEEeCCCCEEEEE
Q 010287 347 KFARN--GRHILSRDY-MTLKLWDINMDSG-------PVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 415 (513)
Q Consensus 347 ~~sp~--~~~l~~~~~-~~v~iwd~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 415 (513)
+|+|+ +.+|++++. ++|++||+..... ....+.. |.. .|++++|++++ +|+++
T Consensus 204 ~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~---------------~v~~v~~s~~~-~l~s~ 267 (330)
T 2hes_X 204 DFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR---------------QVYNVAWGFNG-LIASV 267 (330)
T ss_dssp EECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS---------------CEEEEEECTTS-CEEEE
T ss_pred EecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc---------------ceEEEEEcCCC-EEEEE
Confidence 99998 678888775 9999999974211 1112221 222 25699999765 89999
Q ss_pred eCCCcEEEEecCCCCcc-c-eeecCCCC-ceeEEEEcC--CCCceeeecCCCeEEE
Q 010287 416 SYSNLFRVFGCSEGSAE-S-TTLEASKN-PMRRQVQTP--SRPSRPLGSLSGVVRR 466 (513)
Q Consensus 416 ~~dg~i~vwd~~~~~~~-~-~~~~~~~~-~v~~~~~~~--~~~~l~~~~~d~~i~~ 466 (513)
+.||.|++|+..++... . ....+|.. .+..++|+| ++++|++|+.||.|++
T Consensus 268 ~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~ 323 (330)
T 2hes_X 268 GADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNF 323 (330)
T ss_dssp ETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEE
T ss_pred eCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEE
Confidence 99999999999866321 2 33457776 899999999 7899999999999999
No 34
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.5e-38 Score=343.56 Aligned_cols=385 Identities=14% Similarity=0.161 Sum_probs=293.4
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
...+|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ...+.+|.
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~-----------------------~~~~~~h~--------- 657 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK-----------------------LLDIKAHE--------- 657 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------------------EEEECCCS---------
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE-----------------------EEEeccCC---------
Confidence 4557999999999999999999999999999999877653 35567888
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
..|.+++|+| ++.++++++.|++|++||+.+++.......+. .....+.|+|++...
T Consensus 658 ---~~v~~~~~s~--~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~~--- 714 (1249)
T 3sfz_A 658 ---DEVLCCAFSS--DDSYIATCSADKKVKIWDSATGKLVHTYDEHS---------------EQVNCCHFTNKSNHL--- 714 (1249)
T ss_dssp ---SCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEEEECCS---------------SCEEEEEECSSSSCC---
T ss_pred ---CCEEEEEEec--CCCEEEEEeCCCeEEEEECCCCceEEEEcCCC---------------CcEEEEEEecCCCce---
Confidence 8899999955 78899999999999999999987766554332 122356777754422
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~ 268 (513)
+.++++.++.+++|++..... .. .+.+|...|.+++|+|++++|+++ .||.|++||+.++.....
T Consensus 715 -------~l~sg~~d~~v~vwd~~~~~~------~~-~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~ 780 (1249)
T 3sfz_A 715 -------LLATGSNDFFLKLWDLNQKEC------RN-TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKS 780 (1249)
T ss_dssp -------EEEEEETTSCEEEEETTSSSE------EE-EECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEE
T ss_pred -------EEEEEeCCCeEEEEECCCcch------hh-eecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccce
Confidence 236778899999999976542 22 246899999999999999999998 799999999986543221
Q ss_pred ec------------------------------------------ccCc-----cccccccCCeEEEEEeCCCCeEEEEEe
Q 010287 269 IV------------------------------------------DVKP-----ANMEDLTEVITSAEFHPTHCNMLAYSS 301 (513)
Q Consensus 269 ~~------------------------------------------~~~~-----~~~~~~~~~i~~~~~~~~~~~~l~~~~ 301 (513)
+. +... ....+|...|.+++|+|++ .++++++
T Consensus 781 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~ 859 (1249)
T 3sfz_A 781 INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIAL 859 (1249)
T ss_dssp EECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEEC
T ss_pred ecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEe
Confidence 10 0000 0012677889999999998 8999999
Q ss_pred CCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCee----
Q 010287 302 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVA---- 376 (513)
Q Consensus 302 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~---- 376 (513)
.||.|++||+.++.. ... +.+|...|.+++|+|+++++++++. +.|++||+.. .....
T Consensus 860 ~dg~v~vwd~~~~~~----~~~------------~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~-~~~~~~~~~ 922 (1249)
T 3sfz_A 860 SQYCVELWNIDSRLK----VAD------------CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK-VCKNSAIVL 922 (1249)
T ss_dssp SSSCEEEEETTTTEE----EEE------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH-HHSCCSSSE
T ss_pred CCCeEEEEEcCCCce----eee------------cCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccc-cceeeeecc
Confidence 999999999987654 222 3456688999999999999999875 9999999763 11000
Q ss_pred -------------------------eeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc
Q 010287 377 -------------------------TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 431 (513)
Q Consensus 377 -------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 431 (513)
......... .. ..-..+.+++|+|+++++++|+.||.|++|++.++ .
T Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~-~ 994 (1249)
T 3sfz_A 923 KQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI----DY---LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN-R 994 (1249)
T ss_dssp EEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE----EE---ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT-S
T ss_pred cceeeEEEcCCCcEEEEecCCcceEEEecCcceE----EE---cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC-c
Confidence 000000000 00 00113668999999999999999999999999987 4
Q ss_pred cceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEE
Q 010287 432 ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 511 (513)
Q Consensus 432 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~ 511 (513)
....+.+|..+|.+++|+|++++|++++.|+.|++ |+...... .....|...|.+++|+|++.+++.+.++.+.+|
T Consensus 995 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~v---wd~~~~~~-~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vw 1070 (1249)
T 3sfz_A 995 VFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQV---WNWQTGDY-VFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVW 1070 (1249)
T ss_dssp CEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEE---EETTTTEE-ECCBCCSSCEEEEEECSSSEEEEEESSSEEEEE
T ss_pred eeeecccCCCceEEEEECCCCCEEEEEcCCCEEEE---EECCCCce-EEEecCCCcEEEEEEcCCCcEEEEECCCcEEEE
Confidence 55778899999999999999999999999999999 33322111 123468899999999999888778889999999
Q ss_pred eC
Q 010287 512 YA 513 (513)
Q Consensus 512 ~~ 513 (513)
+.
T Consensus 1071 d~ 1072 (1249)
T 3sfz_A 1071 NV 1072 (1249)
T ss_dssp ET
T ss_pred EC
Confidence 63
No 35
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.3e-38 Score=287.57 Aligned_cols=293 Identities=20% Similarity=0.329 Sum_probs=235.7
Q ss_pred CCcceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCC
Q 010287 87 HPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGP 166 (513)
Q Consensus 87 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (513)
.|.+.....+.+|. +.|++++|+| ++.+|++++.|+.|++|++.+++....
T Consensus 10 ~~~~~~~~~~~gh~------------~~v~~~~~s~--~~~~l~s~~~dg~i~iw~~~~~~~~~~--------------- 60 (312)
T 4ery_A 10 KPNYALKFTLAGHT------------KAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGKFEKT--------------- 60 (312)
T ss_dssp CCCCEEEEEECCCS------------SCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEE---------------
T ss_pred CCCceeEEEEcccC------------CcEEEEEECC--CCCEEEEeeCCCeEEEEeCCCcccchh---------------
Confidence 45666777889999 8899999955 788999999999999999987654322
Q ss_pred cccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCE
Q 010287 167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 246 (513)
Q Consensus 167 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 246 (513)
+.+|...|.+++|+|++++
T Consensus 61 -------------------------------------------------------------~~~h~~~v~~~~~~~~~~~ 79 (312)
T 4ery_A 61 -------------------------------------------------------------ISGHKLGISDVAWSSDSNL 79 (312)
T ss_dssp -------------------------------------------------------------ECCCSSCEEEEEECTTSSE
T ss_pred -------------------------------------------------------------hccCCCceEEEEEcCCCCE
Confidence 3577788999999999999
Q ss_pred EEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeec
Q 010287 247 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 325 (513)
Q Consensus 247 l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 325 (513)
|+++ .|+.|++||+++++... .+.+|...|.+++|+|++ .+|++++.|+.|++||+++++. ...
T Consensus 80 l~s~~~d~~i~vwd~~~~~~~~--------~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~----~~~-- 144 (312)
T 4ery_A 80 LVSASDDKTLKIWDVSSGKCLK--------TLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKC----LKT-- 144 (312)
T ss_dssp EEEEETTSEEEEEETTTCCEEE--------EEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCE----EEE--
T ss_pred EEEECCCCEEEEEECCCCcEEE--------EEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEE----EEE--
Confidence 9998 79999999998765443 457799999999999998 8999999999999999988764 233
Q ss_pred cccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEE
Q 010287 326 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 404 (513)
Q Consensus 326 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (513)
+..|...|.+++|+|++++|++++. +.|++||++. ++.+..+..+... .+..++
T Consensus 145 ----------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~--------------~~~~~~ 199 (312)
T 4ery_A 145 ----------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNP--------------PVSFVK 199 (312)
T ss_dssp ----------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCSSCC--------------CEEEEE
T ss_pred ----------ecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeeEEeccCCC--------------ceEEEE
Confidence 2345578999999999999999875 9999999986 6665554332211 145799
Q ss_pred EeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCcee---EEEEcCCCCceeeecCCCeEEEecCCCCCccccCCcc
Q 010287 405 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR---RQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNA 481 (513)
Q Consensus 405 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~ 481 (513)
|+|++++|++++.|+.|++||+.++ .....+.+|..... .....+++.+|++|+.||.|++ |+....+.....
T Consensus 200 ~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~v---wd~~~~~~~~~~ 275 (312)
T 4ery_A 200 FSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI---WNLQTKEIVQKL 275 (312)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTT-EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEE---EETTTCCEEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEE---EECCCchhhhhh
Confidence 9999999999999999999999987 44466777765433 2334578899999999999999 444433344445
Q ss_pred ccccCCeeEEEEeCCCCEEEEEc---CCcEEEEeC
Q 010287 482 FDFSMKLLHLAWHPSENSIACAA---SNSLYMYYA 513 (513)
Q Consensus 482 ~~~~~~i~~~~~sp~~~~la~~~---~~~~~i~~~ 513 (513)
.+|...|.+++|+|++++|++++ ++.+.+|..
T Consensus 276 ~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 276 QGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred hccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 57899999999999999999885 788999974
No 36
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=293.60 Aligned_cols=242 Identities=10% Similarity=0.092 Sum_probs=189.7
Q ss_pred cccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEE
Q 010287 230 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 308 (513)
Q Consensus 230 ~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v 308 (513)
.|...|.+++|+|++. |++| .||+|++||+++++...... ..+.+|...|++++|+|++ ++|++|+.|+.|++
T Consensus 80 ~~~~~v~~~~~s~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~----~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~i 153 (344)
T 4gqb_B 80 QTEAGVADLTWVGERG-ILVASDSGAVELWELDENETLIVSK----FCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKV 153 (344)
T ss_dssp EESSCEEEEEEETTTE-EEEEETTSEEEEEEECTTSSCEEEE----EEEECCSSCEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred ccCCCEEEEEEeCCCe-EEEEECCCEEEEEeccCCCceeEee----ccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEE
Confidence 4567799999999864 5565 89999999999776543221 1346899999999999999 99999999999999
Q ss_pred EEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC-EEEEEeC-CeEEEEEccCCCCCeeeeeccccccc
Q 010287 309 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRP 386 (513)
Q Consensus 309 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~ 386 (513)
||+++++. +.. +.+|...|.+++|+|++. +|++++. +.|++||+++ +++...+..+....
T Consensus 154 wd~~~~~~----~~~------------~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~- 215 (344)
T 4gqb_B 154 WDLAQQVV----LSS------------YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC-PKPASQIGCSAPGY- 215 (344)
T ss_dssp EETTTTEE----EEE------------ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS-SSCEEECC----CC-
T ss_pred EECCCCcE----EEE------------EcCcCCceEEEEecCCCCCceeeeccccccccccccc-cceeeeeecceeec-
Confidence 99998765 333 345668999999999885 6777774 9999999997 77776664333211
Q ss_pred ccccccccCCccceeeEEEeCC-CCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCC-CceeeecCCCeE
Q 010287 387 KLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVV 464 (513)
Q Consensus 387 ~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i 464 (513)
.+++++|+|+ +++|++|+.||.|++||++++ +....+.+|..+|.+++|+|++ ++|++|+.|+.|
T Consensus 216 ------------~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i 282 (344)
T 4gqb_B 216 ------------LPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSL 282 (344)
T ss_dssp ------------CEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred ------------cceeeeecCCCCcceEEeccCCcEEEEECCCC-cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeE
Confidence 1458999985 568899999999999999987 4557899999999999999998 579999999999
Q ss_pred EEecCCCCCccccCCccccccCCeeEEEEeCCCC-EEEEEc-CCcEEEEe
Q 010287 465 RRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN-SIACAA-SNSLYMYY 512 (513)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~-~la~~~-~~~~~i~~ 512 (513)
++ |+....+ .....+|.+.|++++|+|+++ +|++++ |+.+++|.
T Consensus 283 ~v---wd~~~~~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 283 AV---LDSSLSE-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp EE---ECTTCCE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EE---EECCCCc-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 99 4433222 223457999999999999986 566766 88888886
No 37
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6e-38 Score=287.97 Aligned_cols=295 Identities=16% Similarity=0.202 Sum_probs=227.8
Q ss_pred cceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcc
Q 010287 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (513)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (513)
.+.+...+.+|. +.|++++|+|. ++.+|++++.|++|++|++........
T Consensus 6 ~~~l~~~l~gH~------------~~V~~l~~~~~-~~~~l~s~s~D~~v~~W~~~~~~~~~~----------------- 55 (319)
T 3frx_A 6 VLVLRGTLEGHN------------GWVTSLATSAG-QPNLLLSASRDKTLISWKLTGDDQKFG----------------- 55 (319)
T ss_dssp EEEEEEEECCCS------------SCEEEEEECSS-CTTEEEEEETTSEEEEEEEEEETTEEE-----------------
T ss_pred EEEEEEEEcccc------------ceEEEEEccCC-CccEEEEecCCccEEEecCCCCCcccc-----------------
Confidence 345667789999 89999999752 236899999999999999865321110
Q ss_pred cCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEE
Q 010287 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 248 (513)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 248 (513)
.+.. .+.+|...|.+++|+|++++|+
T Consensus 56 -----------------------------------------------------~~~~-~~~~h~~~v~~~~~s~dg~~l~ 81 (319)
T 3frx_A 56 -----------------------------------------------------VPVR-SFKGHSHIVQDCTLTADGAYAL 81 (319)
T ss_dssp -----------------------------------------------------EEEE-EEECCSSCEEEEEECTTSSEEE
T ss_pred -----------------------------------------------------ccce-EEeCCcccEEEEEECCCCCEEE
Confidence 0111 1468999999999999999999
Q ss_pred EE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287 249 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 327 (513)
Q Consensus 249 s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 327 (513)
+| .|++|++||+++++... .+.+|...|.+++|+|++ .+|++++.|+.|++||++... ...
T Consensus 82 s~s~D~~v~~wd~~~~~~~~--------~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~~-----~~~---- 143 (319)
T 3frx_A 82 SASWDKTLRLWDVATGETYQ--------RFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQC-----LAT---- 143 (319)
T ss_dssp EEETTSEEEEEETTTTEEEE--------EEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSCE-----EEE----
T ss_pred EEeCCCEEEEEECCCCCeeE--------EEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCe-----EEE----
Confidence 98 79999999999776443 467899999999999998 999999999999999986432 222
Q ss_pred cCCCCccccccccccEEEEEEeec------CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccce
Q 010287 328 EAPGTRSFFTEIIASISDIKFARN------GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 400 (513)
Q Consensus 328 ~~~~~~~~~~~~~~~v~~i~~sp~------~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 400 (513)
+.+|...|.++.|+|. +..+++++. +.|++||++. .+....+.+|... |
T Consensus 144 --------~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~h~~~---------------v 199 (319)
T 3frx_A 144 --------LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-FQIEADFIGHNSN---------------I 199 (319)
T ss_dssp --------ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT-TEEEEEECCCCSC---------------E
T ss_pred --------EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-chhheeecCCCCc---------------E
Confidence 3456688999999985 447888775 9999999986 6777777777765 5
Q ss_pred eeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE--ecCCCCC---cc
Q 010287 401 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VKGADNS---AL 475 (513)
Q Consensus 401 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~--~~~~~~~---~~ 475 (513)
.+++|+|++++|++|+.||.|++||+.++ +....+.. ..++.+++|+|++.+|++++.++ +++ ....... ..
T Consensus 200 ~~~~~sp~g~~l~s~~~dg~i~iwd~~~~-~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~ 276 (319)
T 3frx_A 200 NTLTASPDGTLIASAGKDGEIMLWNLAAK-KAMYTLSA-QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRP 276 (319)
T ss_dssp EEEEECTTSSEEEEEETTCEEEEEETTTT-EEEEEEEC-CSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECC
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEecC-CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCc
Confidence 59999999999999999999999999977 33455554 46899999999999999887655 665 1111110 00
Q ss_pred ccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 476 DANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 476 ~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
........+...+.+++|+|||++|++++ ++.+++|+
T Consensus 277 ~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp CCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 11122234677899999999999999887 66788986
No 38
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.6e-38 Score=293.66 Aligned_cols=325 Identities=12% Similarity=0.126 Sum_probs=251.9
Q ss_pred cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccc
Q 010287 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (513)
Q Consensus 33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (513)
.|.++|.+++|+|||++++++..++.+.+|...... ......+|.
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~h~------------ 51 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA-----------------------RQINTLNHG------------ 51 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE-----------------------EEEEEECCS------------
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCcc-----------------------ccceeccCC------------
Confidence 357899999999999999999877766655432111 111223576
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
..|.+++|+| ++.++++++ ||.|++|++.++.......
T Consensus 52 ~~v~~~~~~~--~~~~l~~~~-dg~i~iw~~~~~~~~~~~~--------------------------------------- 89 (337)
T 1gxr_A 52 EVVCAVTISN--PTRHVYTGG-KGCVKVWDISHPGNKSPVS--------------------------------------- 89 (337)
T ss_dssp SCCCEEEECS--SSSEEEEEC-BSEEEEEETTSTTCCSCSE---------------------------------------
T ss_pred CceEEEEEec--CCcEEEEcC-CCeEEEEECCCCCceeeee---------------------------------------
Confidence 8899999965 777888888 9999999998764221100
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
......|...|.+++|+|++++|+++ .|+.|++||+++++....
T Consensus 90 --------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--- 134 (337)
T 1gxr_A 90 --------------------------------QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK--- 134 (337)
T ss_dssp --------------------------------EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE---
T ss_pred --------------------------------cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCccee---
Confidence 00013677889999999999999998 799999999987653221
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 351 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 351 (513)
..+..|...|.+++|+|++ +++++++.||.|++||+++++. ...+ ..|...+.+++|+|+
T Consensus 135 ---~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~----~~~~------------~~~~~~i~~~~~~~~ 194 (337)
T 1gxr_A 135 ---AELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTL----VRQF------------QGHTDGASCIDISND 194 (337)
T ss_dssp ---EEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE----EEEE------------CCCSSCEEEEEECTT
T ss_pred ---eecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCce----eeee------------ecccCceEEEEECCC
Confidence 1456788999999999998 8999999999999999988764 2332 345578999999999
Q ss_pred CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287 352 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 430 (513)
Q Consensus 352 ~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 430 (513)
+++|++++. +.|++||++. ++.+..+.. ... +.+++|+|++++|++++.|+.|++||+.++.
T Consensus 195 ~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~-~~~---------------v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~ 257 (337)
T 1gxr_A 195 GTKLWTGGLDNTVRSWDLRE-GRQLQQHDF-TSQ---------------IFSLGYCPTGEWLAVGMESSNVEVLHVNKPD 257 (337)
T ss_dssp SSEEEEEETTSEEEEEETTT-TEEEEEEEC-SSC---------------EEEEEECTTSSEEEEEETTSCEEEEETTSSC
T ss_pred CCEEEEEecCCcEEEEECCC-CceEeeecC-CCc---------------eEEEEECCCCCEEEEEcCCCcEEEEECCCCC
Confidence 999999875 9999999986 665555432 221 4589999999999999999999999998763
Q ss_pred ccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEE
Q 010287 431 AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLY 509 (513)
Q Consensus 431 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~ 509 (513)
...+..|..++..+.|+|++++|++++.||.|++ |+....... ....|...|.+++|+|++++|++++ ++.+.
T Consensus 258 --~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~---~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 331 (337)
T 1gxr_A 258 --KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA---WRTPYGASI-FQSKESSSVLSCDISVDDKYIVTGSGDKKAT 331 (337)
T ss_dssp --EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE---EETTTCCEE-EEEECSSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred --eEEEcCCccceeEEEECCCCCEEEEecCCCcEEE---EECCCCeEE-EEecCCCcEEEEEECCCCCEEEEecCCCeEE
Confidence 3567889999999999999999999999999999 332211111 2345789999999999999999877 66688
Q ss_pred EEe
Q 010287 510 MYY 512 (513)
Q Consensus 510 i~~ 512 (513)
+|+
T Consensus 332 iw~ 334 (337)
T 1gxr_A 332 VYE 334 (337)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 39
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.7e-37 Score=322.76 Aligned_cols=330 Identities=16% Similarity=0.204 Sum_probs=261.7
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
...+|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ...+.+|.
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~-----------------------~~~~~~~~--------- 55 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE-----------------------VRSIQVTE--------- 55 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-----------------------EEEEECCS---------
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce-----------------------EEEEecCC---------
Confidence 3568999999999999999999999999999999876553 34567787
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
..|.+++|+| ++.+|++++.||.|++||+.+++....
T Consensus 56 ---~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~-------------------------------------- 92 (814)
T 3mkq_A 56 ---TPVRAGKFIA--RKNWIIVGSDDFRIRVFNYNTGEKVVD-------------------------------------- 92 (814)
T ss_dssp ---SCEEEEEEEG--GGTEEEEEETTSEEEEEETTTCCEEEE--------------------------------------
T ss_pred ---CcEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEE--------------------------------------
Confidence 8899999976 777999999999999999988764332
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~ 268 (513)
+.+|...|.+++|+|++++|+++ .||.|++||++++.....
T Consensus 93 --------------------------------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 134 (814)
T 3mkq_A 93 --------------------------------------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ 134 (814)
T ss_dssp --------------------------------------EECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEE
T ss_pred --------------------------------------EecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEE
Confidence 34677889999999999999998 799999999987644433
Q ss_pred ecccCccccccccCCeEEEEEeC-CCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 347 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 347 (513)
.+.+|...|.+++|+| ++ ..|++++.||.|++||++++... ..+.. .+...+.+++
T Consensus 135 -------~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~v~vwd~~~~~~~----~~~~~-----------~~~~~v~~~~ 191 (814)
T 3mkq_A 135 -------TFEGHEHFVMCVAFNPKDP-STFASGCLDRTVKVWSLGQSTPN----FTLTT-----------GQERGVNYVD 191 (814)
T ss_dssp -------EEECCSSCEEEEEEETTEE-EEEEEEETTSEEEEEETTCSSCS----EEEEC-----------CCTTCCCEEE
T ss_pred -------EEcCCCCcEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcce----eEEec-----------CCCCCEEEEE
Confidence 4567899999999999 66 89999999999999999876542 22221 2226799999
Q ss_pred Eee--cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEE
Q 010287 348 FAR--NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 424 (513)
Q Consensus 348 ~sp--~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 424 (513)
|+| ++.+|++++. +.|++||+.. ++.+..+..|... |.+++|+|++++|++++.||.|++|
T Consensus 192 ~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~~dg~v~vw 255 (814)
T 3mkq_A 192 YYPLPDKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSN---------------VSFAVFHPTLPIIISGSEDGTLKIW 255 (814)
T ss_dssp ECCSTTCCEEEEECTTSEEEEEETTT-TEEEEEEECCSSC---------------EEEEEECSSSSEEEEEETTSCEEEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCC-CcEEEEEcCCCCC---------------EEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 999 9999999876 9999999986 7777888777654 4589999999999999999999999
Q ss_pred ecCCCCccceeecCCCCceeEEEEcCCCCc--eeeecCCCeEEEecCCCCCccc--------------------------
Q 010287 425 GCSEGSAESTTLEASKNPMRRQVQTPSRPS--RPLGSLSGVVRRVKGADNSALD-------------------------- 476 (513)
Q Consensus 425 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~d~~i~~~~~~~~~~~~-------------------------- 476 (513)
|+.++ .....+..+..++..++++|++.. +++++.++.+.+..........
T Consensus 256 d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 334 (814)
T 3mkq_A 256 NSSTY-KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIR 334 (814)
T ss_dssp ETTTC-SEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECC
T ss_pred ECCCC-cEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecc
Confidence 99987 455788888999999999999873 5666555444331000000000
Q ss_pred -------------cCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287 477 -------------ANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 477 -------------~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 512 (513)
.......+...+.+++|+|++++|++++++.+.+|.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~ 383 (814)
T 3mkq_A 335 GNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYT 383 (814)
T ss_dssp SCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEE
T ss_pred cccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEE
Confidence 000011244568999999999999999999999986
No 40
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.3e-38 Score=302.20 Aligned_cols=295 Identities=12% Similarity=0.132 Sum_probs=223.6
Q ss_pred cccccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 31 EVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
...|...|+||+|+|. +.+||+|+.||.|+|||+.++... ....+.+|.
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~---------------------~~~~~~gH~--------- 164 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP---------------------TFIKGIGAG--------- 164 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC---------------------EEECCCSSS---------
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce---------------------eEEEccCCC---------
Confidence 3468889999999995 679999999999999998765531 234567888
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
+.|++|+|+|. ++.+|++++.||+|++||++++........
T Consensus 165 ---~~V~~l~f~p~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~----------------------------------- 205 (435)
T 4e54_B 165 ---GSITGLKFNPL-NTNQFYASSMEGTTRLQDFKGNILRVFASS----------------------------------- 205 (435)
T ss_dssp ---CCCCEEEECSS-CTTEEEEECSSSCEEEEETTSCEEEEEECC-----------------------------------
T ss_pred ---CCEEEEEEeCC-CCCEEEEEeCCCEEEEeeccCCceeEEecc-----------------------------------
Confidence 88999999763 467999999999999999987654322111
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~ 268 (513)
..+...+.+++|+|++++|++| .||.|++||++. +..
T Consensus 206 ---------------------------------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~-- 243 (435)
T 4e54_B 206 ---------------------------------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KEL-- 243 (435)
T ss_dssp ---------------------------------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBC--
T ss_pred ---------------------------------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-cee--
Confidence 1223447789999999999999 799999999874 222
Q ss_pred ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 348 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 348 (513)
..+.+|...|.+++|+|++..+|++++.|+.|++||+++...... + ....+|...|.+++|
T Consensus 244 ------~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~----~---------~~~~~h~~~v~~~~~ 304 (435)
T 4e54_B 244 ------WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS----F---------LYSLPHRHPVNAACF 304 (435)
T ss_dssp ------CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC----C---------SBCCBCSSCEEECCB
T ss_pred ------EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccce----E---------EEeeeccccccceeE
Confidence 156789999999999999867899999999999999987654221 1 012457789999999
Q ss_pred eecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe-----------
Q 010287 349 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS----------- 416 (513)
Q Consensus 349 sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------- 416 (513)
+|++.+|++++. +.|++||+.. +.....+..|........ ....+.|+|++.++++++
T Consensus 305 spdg~~l~s~~~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 374 (435)
T 4e54_B 305 SPDGARLLTTDQKSEIRVYSASQ-WDCPLGLIPHPHRHFQHL---------TPIKAAWHPRYNLIVVGRYPDPNFKSCTP 374 (435)
T ss_dssp CTTSSEEEEEESSSCEEEEESSS-SSSEEEECCCCCCCCSSS---------CCCBCEECSSSSCEEEECCCCTTSCCSST
T ss_pred CCCCCeeEEEcCCCEEEEEECCC-CccceEEecccccccccc---------eeEEEEEcCCCCEEEEEEcCCCCeEEEEe
Confidence 999999999875 9999999996 666666655543211000 012445666666555543
Q ss_pred -CCCcEEEEecCCCCccceeecCCCCceeEE-EEcCCCCceeeecCCCeEEE
Q 010287 417 -YSNLFRVFGCSEGSAESTTLEASKNPMRRQ-VQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 417 -~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~d~~i~~ 466 (513)
.++.|++||..++........+|...|.++ +|+|++++|++|+ |+.|++
T Consensus 375 ~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~i 425 (435)
T 4e54_B 375 YELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILI 425 (435)
T ss_dssp TCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEE
T ss_pred cCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEE
Confidence 346799999998855444456788888887 6999999999987 788999
No 41
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-39 Score=310.17 Aligned_cols=340 Identities=9% Similarity=0.029 Sum_probs=231.3
Q ss_pred ccccccEEEEEEcCCC---------CEEEe-------------------ecCCCcEEEEEeeCCCCCCCccCcccccccc
Q 010287 32 VQEVDIISAIEFDKSG---------DHLAT-------------------GDRGGRVVLFERTDTRDNGGQRRDLEMMDYS 83 (513)
Q Consensus 32 ~~h~~~V~~v~~sp~g---------~~lat-------------------g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 83 (513)
..+.+.|.+|+|+|++ ++||+ ++.|++|+||++.+++..
T Consensus 130 ~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~------------- 196 (524)
T 2j04_B 130 YNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH------------- 196 (524)
T ss_dssp EECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC-------------
T ss_pred EECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC-------------
Confidence 3457788899998876 56666 557889999998776531
Q ss_pred ccCCCcceEeccccCCCCcccccccccccccceeEEEeec----CCCceEEEeecCCeEEEEEccCceeeeeeccccCCC
Q 010287 84 MSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS----ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE 159 (513)
Q Consensus 84 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~----~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~ 159 (513)
......+.+|. +.|.+++|+|. +++.+|++++.||+|++||+..+..........
T Consensus 197 ------~~~~~~l~~~~------------~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~--- 255 (524)
T 2j04_B 197 ------CVKVQTIVHSF------------GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC--- 255 (524)
T ss_dssp ------EEEEEEEEECC------------CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC---
T ss_pred ------ceEEEEEEecC------------CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee---
Confidence 11112344565 77999999885 335799999999999999997654210000000
Q ss_pred cccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEE
Q 010287 160 KAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSIS 239 (513)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 239 (513)
..+. ..+.+|...|.+++
T Consensus 256 -------------------------------------------------------------~~p~-~~l~~h~~~v~sv~ 273 (524)
T 2j04_B 256 -------------------------------------------------------------EKPS-LTLSLADSLITTFD 273 (524)
T ss_dssp -------------------------------------------------------------CSCS-EEECCTTTCEEEEE
T ss_pred -------------------------------------------------------------cCce-EEEEcCCCCEEEEE
Confidence 0000 11467889999999
Q ss_pred eccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEE--EEeCCCCeEEEEEeCCCcEEEEEcCCccc
Q 010287 240 NNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA--EFHPTHCNMLAYSSSKGSIRLIDMRQSAL 316 (513)
Q Consensus 240 ~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 316 (513)
|++++ .|++| .||+|++||++++..... .+.+|...|.++ .|+|++..+|++++.|++|++||+++++.
T Consensus 274 ~s~~~-~lasgs~DgtV~lWD~~~~~~~~~-------~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~ 345 (524)
T 2j04_B 274 FLSPT-TVVCGFKNGFVAEFDLTDPEVPSF-------YDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT 345 (524)
T ss_dssp ESSSS-EEEEEETTSEEEEEETTBCSSCSE-------EEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred ecCCC-eEEEEeCCCEEEEEECCCCCCceE-------EeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence 99864 78888 799999999986543221 357899999999 46776437899999999999999988664
Q ss_pred ccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccC
Q 010287 317 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND 395 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (513)
...+.++.. ...|.+++|+|+++.++++++ ++|++||++. +..+..+.+|...
T Consensus 346 ----~~~~~~~~~----------~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~----------- 399 (524)
T 2j04_B 346 ----TKTTVSRFR----------GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVSRETT----------- 399 (524)
T ss_dssp ----HCEEEEECS----------CCSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEEECSSC-----------
T ss_pred ----ccccccccc----------cCcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeeecCCCc-----------
Confidence 222222210 024788999999999998775 9999999996 7777778888765
Q ss_pred CccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecC-----CCCceeEEEEcCCCCceeeecCCCeEEEecCC
Q 010287 396 SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-----SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA 470 (513)
Q Consensus 396 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~ 470 (513)
|++++|+|++++|++|+.||+|++||+... .....+. +...+..++|+|+++.+... .+..+.. +
T Consensus 400 ----V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~-~~~~~~~---~ 469 (524)
T 2j04_B 400 ----ITAIGVSRLHPMVLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYRID-SSYEVYP---L 469 (524)
T ss_dssp ----EEEEECCSSCCBCEEEETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEEEC-CCCCCCC----
T ss_pred ----eEEEEeCCCCCeEEEEECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEEcc-CCceecc---c
Confidence 569999999999999999999999998743 2222221 12246788999998744221 1111111 0
Q ss_pred CCCccccCCccccccCCeeEEEEeCCCC---EEEEEcC-CcEEEEe
Q 010287 471 DNSALDANGNAFDFSMKLLHLAWHPSEN---SIACAAS-NSLYMYY 512 (513)
Q Consensus 471 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~---~la~~~~-~~~~i~~ 512 (513)
... ........+|...|.+++|+|+++ +||+|+. +.++||.
T Consensus 470 ~~~-g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 470 TVN-DVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp -------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred ccC-CcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 000 112234556899999999999965 8999985 7788885
No 42
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.4e-37 Score=287.54 Aligned_cols=303 Identities=14% Similarity=0.191 Sum_probs=228.7
Q ss_pred ccccccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287 30 EEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (513)
...+|.+.|++|+|+|+ +++||||+.||+|+|||+...+.. .......+.+|.
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~------------------~~~~~~~l~~h~-------- 86 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN------------------YGIPQRALRGHS-------- 86 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC------------------SEEEEEEECCCS--------
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc------------------cceeeEEEeCCC--------
Confidence 46689999999999998 689999999999999998765531 122345678888
Q ss_pred ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (513)
Q Consensus 109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 188 (513)
..|.+++|+| ++.+|++++.|+.|++|+................ .....+++++..+
T Consensus 87 ----~~V~~~~~s~--dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~l-- 143 (340)
T 4aow_A 87 ----HFVSDVVISS--DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD---------------VLSVAFSSDNRQI-- 143 (340)
T ss_dssp ----SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC---------------EEEEEECTTSSCE--
T ss_pred ----CCEEEEEECC--CCCEEEEEcccccceEEeecccceeeeecCCCCc---------------eeEEEEeecCccc--
Confidence 8899999954 8889999999999999999987655544332211 1133455666655
Q ss_pred ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC--CEEEEE-cCCeEEEEEcCCCcc
Q 010287 189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQ 265 (513)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~-~d~~i~vwd~~~~~~ 265 (513)
++++.++.+++|++..... ......+|...+.+++|++++ .+++++ .|+.|++||+++.+.
T Consensus 144 ----------~s~s~d~~~~~~d~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~ 207 (340)
T 4aow_A 144 ----------VSGSRDKTIKLWNTLGVCK------YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL 207 (340)
T ss_dssp ----------EEEETTSCEEEECTTSCEE------EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE
T ss_pred ----------eeecCCCeEEEEEeCCCce------EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce
Confidence 7788899999999754322 222346888999999998864 466777 799999999987654
Q ss_pred eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287 266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 345 (513)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 345 (513)
.. .+.+|...|++++|+|++ ++|++++.||.|++||+++... +..+..+ ..+.+
T Consensus 208 ~~--------~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~----~~~~~~~-------------~~v~~ 261 (340)
T 4aow_A 208 KT--------NHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKH----LYTLDGG-------------DIINA 261 (340)
T ss_dssp EE--------EECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEE----EEEEECS-------------SCEEE
T ss_pred ee--------EecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCce----eeeecCC-------------ceEEe
Confidence 33 457899999999999998 8999999999999999988765 3333322 57999
Q ss_pred EEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEe
Q 010287 346 IKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 425 (513)
Q Consensus 346 i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 425 (513)
+.|+|++.+++++.++.|++||++. ...+..+..+..... .......|++++|+|++++|++|+.||.|+|||
T Consensus 262 ~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~------~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 262 LCFSPNRYWLCAATGPSIKIWDLEG-KIIVDELKQEVISTS------SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEECSSSSEEEEEETTEEEEEETTT-TEEEEEECCC-------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eecCCCCceeeccCCCEEEEEECCC-CeEEEeccccceeee------ccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 9999999888888889999999985 555544433221100 000111366999999999999999999999999
Q ss_pred cCCCC
Q 010287 426 CSEGS 430 (513)
Q Consensus 426 ~~~~~ 430 (513)
+++|.
T Consensus 335 ~~tGt 339 (340)
T 4aow_A 335 VTIGT 339 (340)
T ss_dssp EEC--
T ss_pred CCCcC
Confidence 99874
No 43
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-37 Score=283.59 Aligned_cols=295 Identities=15% Similarity=0.175 Sum_probs=214.7
Q ss_pred EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (513)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (513)
....+.+|. +.|.+++|+| + +|++++.|++|++||+..+......
T Consensus 6 ~~~~~~~h~------------~~v~~~~~s~--~--~las~~~D~~i~lw~~~~~~~~~~~------------------- 50 (330)
T 2hes_X 6 LIKSLKLYK------------EKIWSFDFSQ--G--ILATGSTDRKIKLVSVKYDDFTLID------------------- 50 (330)
T ss_dssp EEEEEECCS------------SCEEEEEEET--T--EEEEEESSSCEEEEECSSSCCEEEE-------------------
T ss_pred cceeeccCC------------CceeeeccCC--C--EEEEEcCCCEEEEEEecCCCeEEEE-------------------
Confidence 445678888 8899999964 4 8999999999999999865321110
Q ss_pred ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEe-eccccCCeEEEEeccCCCEEEEE
Q 010287 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIY-AHAHDYHINSISNNSDGETFISA 250 (513)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~ 250 (513)
.+ ..+|...|.+++|+|++++|++|
T Consensus 51 ------------------------------------------------------~~~~~~h~~~v~~v~~sp~~~~las~ 76 (330)
T 2hes_X 51 ------------------------------------------------------VLDETAHKKAIRSVAWRPHTSLLAAG 76 (330)
T ss_dssp ------------------------------------------------------EECTTCCCSCEEEEEECTTSSEEEEE
T ss_pred ------------------------------------------------------EEecCCccCCEEEEEECCCCCEEEEE
Confidence 01 12488889999999999999998
Q ss_pred -cCCeEEEEEcCCCcce---eeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecc
Q 010287 251 -DDLRINLWNLEISNQS---FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 326 (513)
Q Consensus 251 -~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 326 (513)
.|++|++||++..... ... ...+.+|...|.+++|+|++ ++|++++.|+.|++||++......+.+..
T Consensus 77 s~D~~v~iw~~~~~~~~~~~~~~----~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~--- 148 (330)
T 2hes_X 77 SFDSTVSIWAKEESADRTFEMDL----LAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISV--- 148 (330)
T ss_dssp ETTSCEEEEEC-------CCCEE----EEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEE---
T ss_pred eCCCcEEEEEcccCcCcccccee----EEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEE---
Confidence 7999999998643210 010 02467899999999999998 99999999999999999543211111222
Q ss_pred ccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCC--CCeeeeecccccccccccccccCCccceeeE
Q 010287 327 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFEC 403 (513)
Q Consensus 327 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (513)
+.+|...|.+++|+|++.+|++++. +.|++||... + +++..+.+|... |+++
T Consensus 149 ---------~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~-~~~~~~~~~~~h~~~---------------v~~~ 203 (330)
T 2hes_X 149 ---------LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD-DDWECVAVLNGHEGT---------------VWSS 203 (330)
T ss_dssp ---------ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEET-TEEEEEEEECCCSSC---------------EEEE
T ss_pred ---------eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC-CCeeEEEEccCCCCc---------------EEEE
Confidence 4556688999999999999999875 9999999875 3 466777777765 5589
Q ss_pred EEeCC--CCEEEEEeCCCcEEEEecCCCCc-------cceeecC-CCCceeEEEEcCCCCceeeecCCCeEEEecCCCCC
Q 010287 404 CLSGD--GGRVATGSYSNLFRVFGCSEGSA-------ESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNS 473 (513)
Q Consensus 404 ~~s~~--~~~l~~~~~dg~i~vwd~~~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~ 473 (513)
+|+|+ +.+|++|+.|+.|++||+..+.. ....+.. |..+|.+++|++++ +|++++.||.|++ |+..
T Consensus 204 ~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~i---w~~~ 279 (330)
T 2hes_X 204 DFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAV---YEEV 279 (330)
T ss_dssp EECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEE---EEEE
T ss_pred EecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEE---EEcC
Confidence 99998 67899999999999999875421 1233444 88999999999654 8999999999999 2221
Q ss_pred cc--ccC-CccccccC-CeeEEEEeC--CCCEEEEEc-CCcEEEEe
Q 010287 474 AL--DAN-GNAFDFSM-KLLHLAWHP--SENSIACAA-SNSLYMYY 512 (513)
Q Consensus 474 ~~--~~~-~~~~~~~~-~i~~~~~sp--~~~~la~~~-~~~~~i~~ 512 (513)
.. ... .....|.. .|.+++|+| ++++||+++ ++.+++|+
T Consensus 280 ~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~ 325 (330)
T 2hes_X 280 DGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWS 325 (330)
T ss_dssp TTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEE
T ss_pred CCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEE
Confidence 10 001 11234666 899999999 788999887 66788886
No 44
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.7e-36 Score=281.60 Aligned_cols=300 Identities=14% Similarity=0.177 Sum_probs=224.2
Q ss_pred ceEeccccCCCCcccccccccccccceeEEEee----cCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCC
Q 010287 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ----SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNG 165 (513)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~----~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 165 (513)
+.....+.+|. +.|++++|.+ ..++.+|++++.|++|++||+...+.....
T Consensus 11 ~~~~~~l~gH~------------~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~------------- 65 (343)
T 2xzm_R 11 VVKRGILEGHS------------DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF------------- 65 (343)
T ss_dssp EEEEEEEECCS------------SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS-------------
T ss_pred eeeeeeeccch------------hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc-------------
Confidence 34556788999 8999999932 136779999999999999998764311000
Q ss_pred CcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCC
Q 010287 166 PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE 245 (513)
Q Consensus 166 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 245 (513)
..+ ...+.+|...|.+++|+|++.
T Consensus 66 -------------------------------------------------------~~~-~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 66 -------------------------------------------------------GIP-HKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp -------------------------------------------------------EEE-EEEECCCSSCEEEEEECSSTT
T ss_pred -------------------------------------------------------ccc-cchhccCCCceEEEEECCCCC
Confidence 001 112468999999999999999
Q ss_pred EEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceee
Q 010287 246 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 324 (513)
Q Consensus 246 ~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 324 (513)
++++| .|++|++||+++++... .+.+|...|.+++|+|++ ++|++++.|+.|++||+..... ...
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~~~~--------~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~-----~~~ 155 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGTTYK--------RFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECK-----FSS 155 (343)
T ss_dssp EEEEEETTSEEEEEETTSSCEEE--------EEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEE-----EEC
T ss_pred EEEEEcCCCcEEEEECCCCcEEE--------EEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCce-----eee
Confidence 99998 79999999999776443 457899999999999998 8999999999999999874221 111
Q ss_pred ccccCCCCccccccccccEEEEEEeecC----------CEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccc
Q 010287 325 EEQEAPGTRSFFTEIIASISDIKFARNG----------RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE 393 (513)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~----------~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (513)
. ...+|...|.+++|+|++ .++++++. +.|++||.. ......+..|...
T Consensus 156 ~---------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~--------- 215 (343)
T 2xzm_R 156 A---------EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESN--------- 215 (343)
T ss_dssp C---------TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSC---------
T ss_pred e---------cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCcccc---------
Confidence 1 023466789999999987 68888775 999999954 5566677777654
Q ss_pred cCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecC--CC
Q 010287 394 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG--AD 471 (513)
Q Consensus 394 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~--~~ 471 (513)
|.+++|+|++++|++|+.||.|++||+.........+ .+...+.+++|+|++++++++ .|+.|++... ..
T Consensus 216 ------v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 216 ------VNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQS 287 (343)
T ss_dssp ------EEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCC
T ss_pred ------ceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCC
Confidence 5599999999999999999999999996543333333 345579999999999888755 5778888211 11
Q ss_pred CCc-cccC-------CccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 472 NSA-LDAN-------GNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 472 ~~~-~~~~-------~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
... ..+. ....+|...|.+++|+|++++||+|+ ++.+++|.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 288 KAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFS 337 (343)
T ss_dssp SCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred CCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEE
Confidence 110 0011 01125778899999999999999887 66777885
No 45
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-38 Score=323.56 Aligned_cols=426 Identities=12% Similarity=0.049 Sum_probs=265.7
Q ss_pred cccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcce
Q 010287 12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (513)
Q Consensus 12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (513)
.....|++.. ++. .....|.+.|++++|+|++++|++|+.||.|++||+.+++.. .+.
T Consensus 79 ~~v~lWd~~~--~~~--~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~------------------~~~ 136 (902)
T 2oaj_A 79 DTVYVLSLYS--QKV--LTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS------------------SFK 136 (902)
T ss_dssp CEEEEEETTT--CSE--EEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE------------------EEE
T ss_pred CeEEEEECCC--CcE--EEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc------------------cce
Confidence 3455677754 111 122347789999999999999999999999999998765421 000
Q ss_pred E-----e-ccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCC
Q 010287 92 Y-----K-TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNG 165 (513)
Q Consensus 92 ~-----~-~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 165 (513)
. . ..+.+|. +.|.+++|+|. ++..+++++.|+.| +||+++++....+..+..++......
T Consensus 137 i~~~~~~~~~~~~h~------------~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~ 202 (902)
T 2oaj_A 137 LDNLQKSSFFPAARL------------SPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDF 202 (902)
T ss_dssp ECCHHHHHTCSSSCC------------CCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTT
T ss_pred eccccccccccccCC------------CCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccc
Confidence 0 0 2346677 88999999762 23589999999999 99999988766655442211100000
Q ss_pred ---CcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeec-----------cc
Q 010287 166 ---PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAH-----------AH 231 (513)
Q Consensus 166 ---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----------~h 231 (513)
...........++|+|+|..+ ++++.++.|++||+...+............. .|
T Consensus 203 ~~~~~~~h~~~V~~v~fspdg~~l------------asgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~ 270 (902)
T 2oaj_A 203 SEKTNEKRTPKVIQSLYHPNSLHI------------ITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTN 270 (902)
T ss_dssp CCCTTSCBCCCEEEEEECTTSSEE------------EEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSC
T ss_pred ccccccccCCCeEEEEEcCCCCEE------------EEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccc
Confidence 000001223478899999987 8889999999999876543211000000000 12
Q ss_pred cCCeEEEEecc----CC-CEEEEE--------------------------------------------------------
Q 010287 232 DYHINSISNNS----DG-ETFISA-------------------------------------------------------- 250 (513)
Q Consensus 232 ~~~v~~~~~~~----~~-~~l~s~-------------------------------------------------------- 250 (513)
...|.+++|++ ++ ..|++|
T Consensus 271 ~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 350 (902)
T 2oaj_A 271 AAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILP 350 (902)
T ss_dssp CCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEE
T ss_pred cCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEE
Confidence 33466666632 22 233333
Q ss_pred ---------------------cCCeEEEEEcCCCcceeeec---------------------------------ccCccc
Q 010287 251 ---------------------DDLRINLWNLEISNQSFNIV---------------------------------DVKPAN 276 (513)
Q Consensus 251 ---------------------~d~~i~vwd~~~~~~~~~~~---------------------------------~~~~~~ 276 (513)
.|+.|++|++.++....... ......
T Consensus 351 ~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~ 430 (902)
T 2oaj_A 351 IPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYL 430 (902)
T ss_dssp CCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCS
T ss_pred CCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCc
Confidence 23444444443221111000 000011
Q ss_pred cccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEE
Q 010287 277 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 356 (513)
Q Consensus 277 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~ 356 (513)
+.+|...+.+++|+|++ ++|++|+.|++|++||+.++.... ...+...- .+..-.+|...|.+++|+|++++||
T Consensus 431 l~G~~~~v~sv~~spdg-~~laSgs~DgtVrlWd~~~g~~~~--~~~~~~~l---~~~~~~~h~~~V~svafspdg~~LA 504 (902)
T 2oaj_A 431 LKGGVRTKRQKLPAEYG-TAFITGHSNGSVRIYDASHGDIQD--NASFEVNL---SRTLNKAKELAVDKISFAAETLELA 504 (902)
T ss_dssp CCCSBCCCCCCCCCSEE-EEEEEEETTSEEEEEESSCCTTTT--TBCEEEEH---HHHTTCSSSCCEEEEEEETTTTEEE
T ss_pred ccCCcCCCCcccccccC-cEEEEecCCCcEEEEECCCccccC--CceEEeec---hhhcCCCCCCceeEEEecCCCCeEE
Confidence 23344444455567888 899999999999999998874311 11111000 0000126778999999999999999
Q ss_pred EEeC-CeEEEEEccCCCCC---------------------------------------------eeeeeccccccccccc
Q 010287 357 SRDY-MTLKLWDINMDSGP---------------------------------------------VATFQVHEHLRPKLCD 390 (513)
Q Consensus 357 ~~~~-~~v~iwd~~~~~~~---------------------------------------------~~~~~~~~~~~~~~~~ 390 (513)
+|+. ++|+|||+.. ++. +..+.+|..
T Consensus 505 sgs~DgtV~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~------- 576 (902)
T 2oaj_A 505 VSIETGDVVLFKYEV-NQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG------- 576 (902)
T ss_dssp EEETTSCEEEEEEEE-CCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSC-------
T ss_pred EEecCcEEEEEEecC-ccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCC-------
Confidence 9885 9999999985 321 222223332
Q ss_pred ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccc----eeec-CCCCceeEEEEc-----CCC---Cceee
Q 010287 391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES----TTLE-ASKNPMRRQVQT-----PSR---PSRPL 457 (513)
Q Consensus 391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~----~~~~-~~~~~v~~~~~~-----~~~---~~l~~ 457 (513)
.|++++|+||| +||+|+.|++|++||+++...+. ..+. +|...|++++|+ ||| ++|++
T Consensus 577 --------~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~s 647 (902)
T 2oaj_A 577 --------KTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVC 647 (902)
T ss_dssp --------SEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEE
T ss_pred --------cEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEE
Confidence 36799999999 99999999999999987653221 2343 899999999999 885 89999
Q ss_pred ecCCCeEEEecCCCC---CccccCCcccc-----ccCCeeEEE-Ee----------------------CCCCEEEEEcCC
Q 010287 458 GSLSGVVRRVKGADN---SALDANGNAFD-----FSMKLLHLA-WH----------------------PSENSIACAASN 506 (513)
Q Consensus 458 ~~~d~~i~~~~~~~~---~~~~~~~~~~~-----~~~~i~~~~-~s----------------------p~~~~la~~~~~ 506 (513)
|+.|+.|++ |++ ..........+ |.++|.+++ |+ +++.+||+ ++.
T Consensus 648 gs~D~tv~~---wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~-~~~ 723 (902)
T 2oaj_A 648 GTDMGEVIT---YKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLIT-GFD 723 (902)
T ss_dssp EETTSEEEE---EEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEE-CSS
T ss_pred EecCCcEEE---EEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEE-ecc
Confidence 999999999 332 11111112222 357787777 77 45555554 488
Q ss_pred cEEEEe
Q 010287 507 SLYMYY 512 (513)
Q Consensus 507 ~~~i~~ 512 (513)
.++||+
T Consensus 724 ~ir~~~ 729 (902)
T 2oaj_A 724 DIRLIT 729 (902)
T ss_dssp EEEEEC
T ss_pred ceEEEe
Confidence 999996
No 46
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8.5e-37 Score=277.41 Aligned_cols=258 Identities=13% Similarity=0.217 Sum_probs=199.1
Q ss_pred cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
..+|.+.|++++|+|+|++||+|+.|++|+||++.+... +....+.+|.
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~---------------------~~~~~l~gH~---------- 53 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH---------------------KLIDTLTGHE---------- 53 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB---------------------CCCEEECCCS----------
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc---------------------EEEEEEcccc----------
Confidence 457999999999999999999999999999999864321 1235678898
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
+.|++++|+|..++.+|++++.|++|++||+++++.....
T Consensus 54 --~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~-------------------------------------- 93 (297)
T 2pm7_B 54 --GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIA-------------------------------------- 93 (297)
T ss_dssp --SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCE--------------------------------------
T ss_pred --CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEE--------------------------------------
Confidence 8899999975444679999999999999999876421110
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC--CCEEEEE-cCCeEEEEEcCCCccee
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSF 267 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~vwd~~~~~~~~ 267 (513)
.+.+|...|.+++|+|+ +.+|+++ .|+.|++||+++.....
T Consensus 94 ------------------------------------~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~ 137 (297)
T 2pm7_B 94 ------------------------------------VHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS 137 (297)
T ss_dssp ------------------------------------EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC
T ss_pred ------------------------------------EeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee
Confidence 13467888999999997 8899998 79999999998653221
Q ss_pred eecccCccccccccCCeEEEEEeCCC------------CeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccc
Q 010287 268 NIVDVKPANMEDLTEVITSAEFHPTH------------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF 335 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (513)
. ..+.+|...|.+++|+|++ ..+|++|+.|+.|++||++++.........
T Consensus 138 ~------~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~------------ 199 (297)
T 2pm7_B 138 P------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST------------ 199 (297)
T ss_dssp C------EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEE------------
T ss_pred e------eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEE------------
Confidence 1 1457899999999999973 268999999999999999875421111122
Q ss_pred cccccccEEEEEEeecC---CEEEEEeC-CeEEEEEccCCCCCe--eee--ecccccccccccccccCCccceeeEEEeC
Q 010287 336 FTEIIASISDIKFARNG---RHILSRDY-MTLKLWDINMDSGPV--ATF--QVHEHLRPKLCDLYENDSIFDKFECCLSG 407 (513)
Q Consensus 336 ~~~~~~~v~~i~~sp~~---~~l~~~~~-~~v~iwd~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 407 (513)
+.+|...|.+++|+|++ .+|++++. ++|++||++...... ..+ ..+.. .|++++|+|
T Consensus 200 l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~---------------~v~~~~~s~ 264 (297)
T 2pm7_B 200 LEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD---------------VLWRASWSL 264 (297)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS---------------CEEEEEECS
T ss_pred ecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCC---------------cEEEEEECC
Confidence 45677899999999984 78998875 999999998522111 112 12221 256899999
Q ss_pred CCCEEEEEeCCCcEEEEecCC
Q 010287 408 DGGRVATGSYSNLFRVFGCSE 428 (513)
Q Consensus 408 ~~~~l~~~~~dg~i~vwd~~~ 428 (513)
++++|++++.|+.|++|+...
T Consensus 265 ~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 265 SGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSCCEEEEETTSCEEEEEECT
T ss_pred CCCEEEEEcCCCcEEEEEECC
Confidence 999999999999999999764
No 47
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.9e-36 Score=308.25 Aligned_cols=289 Identities=15% Similarity=0.225 Sum_probs=227.8
Q ss_pred ccccccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287 30 EEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (513)
...+|.+.|++++|+|+ +++|++|+.||+|+||++...... .......+.+|.
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~------------------~~~~~~~~~~h~-------- 430 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA------------------YGVAQRRLTGHS-------- 430 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC------------------SCEEEEEEECCS--------
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc------------------cccccceecCCC--------
Confidence 35589999999999997 579999999999999998754321 112334577888
Q ss_pred ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (513)
Q Consensus 109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 188 (513)
..|.+++|+| ++.+|++++.|++|++||+.++.....
T Consensus 431 ----~~v~~v~~s~--~g~~l~sgs~Dg~v~vwd~~~~~~~~~------------------------------------- 467 (694)
T 3dm0_A 431 ----HFVEDVVLSS--DGQFALSGSWDGELRLWDLAAGVSTRR------------------------------------- 467 (694)
T ss_dssp ----SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEE-------------------------------------
T ss_pred ----CcEEEEEECC--CCCEEEEEeCCCcEEEEECCCCcceeE-------------------------------------
Confidence 8899999955 788999999999999999988754322
Q ss_pred ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287 189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 267 (513)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~ 267 (513)
+.+|...|.+++|+|++++|+++ .|++|++||..... ..
T Consensus 468 ---------------------------------------~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~-~~ 507 (694)
T 3dm0_A 468 ---------------------------------------FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC-KY 507 (694)
T ss_dssp ---------------------------------------EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-EE
T ss_pred ---------------------------------------EeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc-ce
Confidence 35788899999999999999998 79999999986432 22
Q ss_pred eecccCccccccccCCeEEEEEeCCCC-eEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEE
Q 010287 268 NIVDVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 346 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 346 (513)
.+. ....+|...|.+++|+|++. ..+++++.|+.|++||+++++. ... +.+|.+.|.++
T Consensus 508 ~~~----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~----~~~------------~~~h~~~v~~v 567 (694)
T 3dm0_A 508 TIS----EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL----RST------------LAGHTGYVSTV 567 (694)
T ss_dssp EEC----SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE----EEE------------ECCCSSCEEEE
T ss_pred eec----cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE----EEE------------EcCCCCCEEEE
Confidence 211 13357889999999999852 5899999999999999987654 222 45566899999
Q ss_pred EEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEe
Q 010287 347 KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 425 (513)
Q Consensus 347 ~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 425 (513)
+|+|++++|++|+. +.|++||+.+ ++.+..+..+.. +.+++|+|++.+|++++ ++.|++||
T Consensus 568 ~~spdg~~l~sg~~Dg~i~iwd~~~-~~~~~~~~~~~~----------------v~~~~~sp~~~~l~~~~-~~~i~iwd 629 (694)
T 3dm0_A 568 AVSPDGSLCASGGKDGVVLLWDLAE-GKKLYSLEANSV----------------IHALCFSPNRYWLCAAT-EHGIKIWD 629 (694)
T ss_dssp EECTTSSEEEEEETTSBCEEEETTT-TEEEECCBCSSC----------------EEEEEECSSSSEEEEEE-TTEEEEEE
T ss_pred EEeCCCCEEEEEeCCCeEEEEECCC-CceEEEecCCCc----------------EEEEEEcCCCcEEEEEc-CCCEEEEE
Confidence 99999999999875 9999999986 666655543321 45899999999888766 45699999
Q ss_pred cCCCCccceeecCC-------------------CCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 426 CSEGSAESTTLEAS-------------------KNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 426 ~~~~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
+.++. ....+..+ ...+.++.|+|++++|++|+.||.|++
T Consensus 630 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~i 688 (694)
T 3dm0_A 630 LESKS-IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRV 688 (694)
T ss_dssp TTTTE-EEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCCC-ChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEE
Confidence 99773 22333221 123678999999999999999999999
No 48
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-35 Score=279.76 Aligned_cols=289 Identities=14% Similarity=0.186 Sum_probs=236.3
Q ss_pred cccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287 29 GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (513)
Q Consensus 29 ~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (513)
....+|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ...+.+|.
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-----------------------~~~~~~h~-------- 74 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER-----------------------LGTLDGHT-------- 74 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE-----------------------EEEECCCS--------
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh-----------------------hhhhhhcC--------
Confidence 35678999999999999999999999999999999876553 35577888
Q ss_pred ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (513)
Q Consensus 109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 188 (513)
..|.+++|+| ++.+|++++.|+.|++||+.+++.....
T Consensus 75 ----~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~------------------------------------ 112 (369)
T 3zwl_B 75 ----GTIWSIDVDC--FTKYCVTGSADYSIKLWDVSNGQCVATW------------------------------------ 112 (369)
T ss_dssp ----SCEEEEEECT--TSSEEEEEETTTEEEEEETTTCCEEEEE------------------------------------
T ss_pred ----CcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEEe------------------------------------
Confidence 8899999965 7789999999999999999887644321
Q ss_pred ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cC-----CeEEEEEcCC
Q 010287 189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD-----LRINLWNLEI 262 (513)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d-----~~i~vwd~~~ 262 (513)
.+...+.+++|+|++++|+++ .+ +.|++||+..
T Consensus 113 -----------------------------------------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~ 151 (369)
T 3zwl_B 113 -----------------------------------------KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIER 151 (369)
T ss_dssp -----------------------------------------ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEE
T ss_pred -----------------------------------------ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecC
Confidence 245669999999999999998 67 9999999987
Q ss_pred CcceeeecccC---ccccccccC--CeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCc-ccccccceeeccccCCCCcccc
Q 010287 263 SNQSFNIVDVK---PANMEDLTE--VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS-ALCDTHSKLFEEQEAPGTRSFF 336 (513)
Q Consensus 263 ~~~~~~~~~~~---~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~ 336 (513)
......+.... ...+..|.. .+.+++|+|++ ++|++++.||.|++||+++. .. ... +
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~------------~ 214 (369)
T 3zwl_B 152 DSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEY----VDS------------I 214 (369)
T ss_dssp CTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEE----EEE------------E
T ss_pred CccceeecccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEe----EEE------------E
Confidence 65432221110 123344555 89999999998 89999999999999999873 32 222 2
Q ss_pred ccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEE
Q 010287 337 TEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 415 (513)
Q Consensus 337 ~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 415 (513)
..|...|.+++|+|++.+|++++. +.|++||+++ ++.+..+.... . +..++|+|++++++++
T Consensus 215 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~-~---------------~~~~~~~~~~~~l~~~ 277 (369)
T 3zwl_B 215 DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST-LQVLKKYETDC-P---------------LNTAVITPLKEFIILG 277 (369)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEECSS-C---------------EEEEEECSSSSEEEEE
T ss_pred ecCCCceeEEEECCCCCEEEEecCCceEEEEECCC-CceeeeecCCC-C---------------ceeEEecCCCceEEEe
Confidence 345578999999999999999875 9999999996 77777665322 2 4589999999999999
Q ss_pred eCCC--------------cEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 416 SYSN--------------LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 416 ~~dg--------------~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
+.++ .+++||+.++ .....+.+|...|.+++|+|++++|++++.||.|++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 341 (369)
T 3zwl_B 278 GGQEAKDVTTTSANEGKFEARFYHKIFE-EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341 (369)
T ss_dssp ECCC-------------CEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ecCCCceEEEEecCCCcceeEEEecCCC-cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEE
Confidence 9888 8999999987 455788899999999999999999999999999999
No 49
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.5e-35 Score=274.96 Aligned_cols=285 Identities=11% Similarity=0.161 Sum_probs=229.1
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
...+|.+.|++++|+|++++|++++ ||.|++|++.+.+... ........+|.
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~------------------~~~~~~~~~~~--------- 97 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS------------------PVSQLDCLNRD--------- 97 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS------------------CSEEEECSCTT---------
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee------------------eeecccccCCC---------
Confidence 3457999999999999999999999 9999999987654310 00111122566
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
..|.+++|+| ++.++++++.|+.|++||+.+++.....
T Consensus 98 ---~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~------------------------------------- 135 (337)
T 1gxr_A 98 ---NYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTPRIKA------------------------------------- 135 (337)
T ss_dssp ---SBEEEEEECT--TSSEEEEEESSSEEEEEECCCC--EEEE-------------------------------------
T ss_pred ---CcEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCCcceee-------------------------------------
Confidence 8899999965 7789999999999999999876522211
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~ 268 (513)
.+..|...|.+++|+|++++|+++ .|+.|++||+++++...
T Consensus 136 -------------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~- 177 (337)
T 1gxr_A 136 -------------------------------------ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR- 177 (337)
T ss_dssp -------------------------------------EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-
T ss_pred -------------------------------------ecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceee-
Confidence 134677789999999999999998 79999999998765432
Q ss_pred ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 348 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 348 (513)
.+..|...|.+++|+|++ .+|++++.||.|++||+++++.. ..+. +...+.+++|
T Consensus 178 -------~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~----~~~~-------------~~~~v~~~~~ 232 (337)
T 1gxr_A 178 -------QFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQL----QQHD-------------FTSQIFSLGY 232 (337)
T ss_dssp -------EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE----EEEE-------------CSSCEEEEEE
T ss_pred -------eeecccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCceE----eeec-------------CCCceEEEEE
Confidence 456789999999999998 89999999999999999887642 2221 2367999999
Q ss_pred eecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287 349 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 427 (513)
Q Consensus 349 sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 427 (513)
+|+++++++++. +.|++||+.. .+ ...+..|... +.+++|+|++++|++++.||.|++||+.
T Consensus 233 s~~~~~l~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 233 CPTGEWLAVGMESSNVEVLHVNK-PD-KYQLHLHESC---------------VLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp CTTSSEEEEEETTSCEEEEETTS-SC-EEEECCCSSC---------------EEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCCCEEEEEcCCCcEEEEECCC-CC-eEEEcCCccc---------------eeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 999999999875 9999999985 43 3344455443 5589999999999999999999999999
Q ss_pred CCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 428 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 428 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
++... ....|..++.++.|+|++++|++++.||.|++
T Consensus 296 ~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 332 (337)
T 1gxr_A 296 YGASI--FQSKESSSVLSCDISVDDKYIVTGSGDKKATV 332 (337)
T ss_dssp TCCEE--EEEECSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred CCeEE--EEecCCCcEEEEEECCCCCEEEEecCCCeEEE
Confidence 87443 33457889999999999999999999999998
No 50
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=8.2e-36 Score=287.62 Aligned_cols=311 Identities=11% Similarity=0.200 Sum_probs=244.7
Q ss_pred ccccccccE-EEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287 30 EEVQEVDII-SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (513)
Q Consensus 30 ~~~~h~~~V-~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (513)
...+|.+.| +| ++++|++|++|+.||.|++||+.+++. ...+.+|.
T Consensus 113 ~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~-----------------------~~~~~~h~-------- 159 (445)
T 2ovr_B 113 VLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKC-----------------------LRTLVGHT-------- 159 (445)
T ss_dssp EEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCE-----------------------EEECCCCS--------
T ss_pred EecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcE-----------------------EEEEcCCC--------
Confidence 456788865 55 455689999999999999999876653 35677888
Q ss_pred ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (513)
Q Consensus 109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 188 (513)
..|.+++|+ +..+++++.||+|++||+.+++....
T Consensus 160 ----~~v~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~------------------------------------- 194 (445)
T 2ovr_B 160 ----GGVWSSQMR----DNIIISGSTDRTLKVWNAETGECIHT------------------------------------- 194 (445)
T ss_dssp ----SCEEEEEEE----TTEEEEEETTSCEEEEETTTTEEEEE-------------------------------------
T ss_pred ----CCEEEEEec----CCEEEEEeCCCeEEEEECCcCcEEEE-------------------------------------
Confidence 889999994 35999999999999999988764432
Q ss_pred ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287 189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 267 (513)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~ 267 (513)
+.+|...|.+++|+ ++.+++| .|+.|++||+++++...
T Consensus 195 ---------------------------------------~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~ 233 (445)
T 2ovr_B 195 ---------------------------------------LYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLH 233 (445)
T ss_dssp ---------------------------------------ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEE
T ss_pred ---------------------------------------ECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEE
Confidence 24677889999995 5678887 79999999999766443
Q ss_pred eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287 268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 347 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 347 (513)
.+.+|...|.++.+ ++ ..+++++.||.|++||++++.. ...+ .+|...|.++.
T Consensus 234 --------~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~----~~~~------------~~~~~~v~~~~ 286 (445)
T 2ovr_B 234 --------VLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETC----LHTL------------QGHTNRVYSLQ 286 (445)
T ss_dssp --------EEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEE----EEEE------------CCCSSCEEEEE
T ss_pred --------EEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcE----eEEe------------cCCCCceEEEE
Confidence 45678999999999 55 7899999999999999988764 3333 34557899999
Q ss_pred EeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEec
Q 010287 348 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 426 (513)
Q Consensus 348 ~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 426 (513)
| ++.++++++. +.|++||+++ ++.+..+..|... ..++.+++++|++|+.||.|++||+
T Consensus 287 ~--~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~-----------------v~~~~~~~~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 287 F--DGIHVVSGSLDTSIRVWDVET-GNCIHTLTGHQSL-----------------TSGMELKDNILVSGNADSTVKIWDI 346 (445)
T ss_dssp E--CSSEEEEEETTSCEEEEETTT-CCEEEEECCCCSC-----------------EEEEEEETTEEEEEETTSCEEEEET
T ss_pred E--CCCEEEEEeCCCeEEEEECCC-CCEEEEEcCCccc-----------------EEEEEEeCCEEEEEeCCCeEEEEEC
Confidence 8 7889999875 9999999996 8888888777654 2234446779999999999999999
Q ss_pred CCCCccceeecC---CCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCc-----cccccCCeeEEEEeCCCC
Q 010287 427 SEGSAESTTLEA---SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGN-----AFDFSMKLLHLAWHPSEN 498 (513)
Q Consensus 427 ~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~sp~~~ 498 (513)
.++. ....+.. |..++.++.++ ++++++|+.||.|++ |+....+.... ...|...|.+++|+|++.
T Consensus 347 ~~~~-~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~i---wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 420 (445)
T 2ovr_B 347 KTGQ-CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKL---WDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL 420 (445)
T ss_dssp TTCC-EEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEE---EETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE
T ss_pred CCCc-EEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEE---EECCCCceeeeeeccccCCCCceEEEEEecCCEE
Confidence 8874 4456654 88899999995 579999999999999 33221111111 135788999999999999
Q ss_pred EEEEEcCCc-----EEEEe
Q 010287 499 SIACAASNS-----LYMYY 512 (513)
Q Consensus 499 ~la~~~~~~-----~~i~~ 512 (513)
+||+++.++ +.+|+
T Consensus 421 ~la~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 421 VCAVGSRNGTEETKLLVLD 439 (445)
T ss_dssp EEEEECSSSSSCCEEEEEE
T ss_pred EEEEcccCCCCccEEEEEE
Confidence 999999766 77775
No 51
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.6e-36 Score=282.52 Aligned_cols=303 Identities=14% Similarity=0.166 Sum_probs=233.6
Q ss_pred cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccc
Q 010287 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (513)
Q Consensus 33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (513)
.|.++|++++|+|++++||+|+.||.|+||++.+++. .....+.+|.
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~---------------------~~~~~~~~h~------------ 52 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW---------------------VQVHELKEHN------------ 52 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE---------------------EEEEEEECCS------------
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE---------------------EeeeeecCCC------------
Confidence 4889999999999999999999999999999876541 1335567788
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
..|.+++|+| ++.+|++++.|+.|++||+.+++......
T Consensus 53 ~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------------------------------------- 91 (372)
T 1k8k_C 53 GQVTGVDWAP--DSNRIVTCGTDRNAYVWTLKGRTWKPTLV--------------------------------------- 91 (372)
T ss_dssp SCEEEEEEET--TTTEEEEEETTSCEEEEEEETTEEEEEEE---------------------------------------
T ss_pred CcccEEEEeC--CCCEEEEEcCCCeEEEEECCCCeeeeeEE---------------------------------------
Confidence 8899999966 77899999999999999998876433211
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
...|...|.+++|+|++++|+++ .|+.|++||++.........
T Consensus 92 -----------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~- 135 (372)
T 1k8k_C 92 -----------------------------------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK- 135 (372)
T ss_dssp -----------------------------------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE-
T ss_pred -----------------------------------eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee-
Confidence 23566789999999999999998 79999999998765321110
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccccee-ecc-ccCCCCccccccccccEEEEEEe
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL-FEE-QEAPGTRSFFTEIIASISDIKFA 349 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~v~~i~~s 349 (513)
.....|...|.+++|+|++ .+|++++.||.|++||++........... +.. .........+.+|...|.+++|+
T Consensus 136 ---~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 211 (372)
T 1k8k_C 136 ---HIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS 211 (372)
T ss_dssp ---EECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC
T ss_pred ---eeecccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC
Confidence 1235678999999999998 89999999999999997643221100000 000 00001112244677899999999
Q ss_pred ecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287 350 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 428 (513)
Q Consensus 350 p~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 428 (513)
|++++|++++. +.|++||++. ++.+..+..|... +.+++|+|++++|++| .|+.|++|++..
T Consensus 212 ~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 212 ANGSRVAWVSHDSTVCLADADK-KMAVATLASETLP---------------LLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp SSSSEEEEEETTTEEEEEEGGG-TTEEEEEECSSCC---------------EEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CCCCEEEEEeCCCEEEEEECCC-CceeEEEccCCCC---------------eEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 99999999875 9999999996 7888888777654 4589999999988887 899999999987
Q ss_pred --CCc-------------------------------cc------eee-cCCCCceeEEEEc-CCC---CceeeecCCCeE
Q 010287 429 --GSA-------------------------------ES------TTL-EASKNPMRRQVQT-PSR---PSRPLGSLSGVV 464 (513)
Q Consensus 429 --~~~-------------------------------~~------~~~-~~~~~~v~~~~~~-~~~---~~l~~~~~d~~i 464 (513)
+.. .. ..+ .+|..+|.++++. +++ .+|++|+.||.|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i 354 (372)
T 1k8k_C 275 AAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGM 354 (372)
T ss_dssp TTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEE
T ss_pred cCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCce
Confidence 310 00 223 4899999999865 666 999999999999
Q ss_pred EE
Q 010287 465 RR 466 (513)
Q Consensus 465 ~~ 466 (513)
++
T Consensus 355 ~~ 356 (372)
T 1k8k_C 355 SI 356 (372)
T ss_dssp EE
T ss_pred EE
Confidence 99
No 52
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.1e-36 Score=283.07 Aligned_cols=294 Identities=15% Similarity=0.218 Sum_probs=220.3
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
..|.+++|+| ++.+|++++ |+++++|++.+++.......+.... .+..
T Consensus 65 ~~V~~v~fsp--dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~---------------------~~~~-------- 112 (393)
T 1erj_A 65 SVVCCVKFSN--DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN---------------------KDPE-------- 112 (393)
T ss_dssp SCCCEEEECT--TSSEEEEEC-BSCEEEEETTTCCEEEEECC--------------------------------------
T ss_pred CEEEEEEECC--CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc---------------------cccc--------
Confidence 8899999955 788888865 7899999999887654432211000 0000
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
. ........+...|.+++|+|++++|++| .|+.|++||+++++...
T Consensus 113 -------------~----------------~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~---- 159 (393)
T 1erj_A 113 -------------N----------------LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM---- 159 (393)
T ss_dssp -------------------------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE----
T ss_pred -------------c----------------ccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE----
Confidence 0 0000012334458999999999999998 79999999998665432
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR- 350 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp- 350 (513)
.+.+|...|.+++|+|++ ..|++++.|+.|++||+++++. ...+. +...+.+++|+|
T Consensus 160 ----~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~----~~~~~-------------~~~~v~~~~~~~~ 217 (393)
T 1erj_A 160 ----ILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQC----SLTLS-------------IEDGVTTVAVSPG 217 (393)
T ss_dssp ----EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE----EEEEE-------------CSSCEEEEEECST
T ss_pred ----EEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCee----EEEEE-------------cCCCcEEEEEECC
Confidence 457899999999999999 8999999999999999988764 22222 225699999999
Q ss_pred cCCEEEEEeC-CeEEEEEccCCCCCeeeee-------cccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEE
Q 010287 351 NGRHILSRDY-MTLKLWDINMDSGPVATFQ-------VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 422 (513)
Q Consensus 351 ~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 422 (513)
++++|++|+. +.|++||+++ +..+..+. +|... |++++|+|++++|++|+.|+.|+
T Consensus 218 ~~~~l~~~s~d~~v~iwd~~~-~~~~~~~~~~~~~~~~h~~~---------------v~~v~~~~~g~~l~s~s~d~~v~ 281 (393)
T 1erj_A 218 DGKYIAAGSLDRAVRVWDSET-GFLVERLDSENESGTGHKDS---------------VYSVVFTRDGQSVVSGSLDRSVK 281 (393)
T ss_dssp TCCEEEEEETTSCEEEEETTT-CCEEEEEC------CCCSSC---------------EEEEEECTTSSEEEEEETTSEEE
T ss_pred CCCEEEEEcCCCcEEEEECCC-CcEEEeecccccCCCCCCCC---------------EEEEEECCCCCEEEEEeCCCEEE
Confidence 8999999875 9999999986 66665552 23322 56999999999999999999999
Q ss_pred EEecCCCCc-----------cceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEE
Q 010287 423 VFGCSEGSA-----------ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHL 491 (513)
Q Consensus 423 vwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~ 491 (513)
+||+.+... ....+.+|...|.+++++|++++|++|+.|+.|++ |+...........+|...|.++
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~i---wd~~~~~~~~~l~~h~~~v~~v 358 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF---WDKKSGNPLLMLQGHRNSVISV 358 (393)
T ss_dssp EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEE---EETTTCCEEEEEECCSSCEEEE
T ss_pred EEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEE---EECCCCeEEEEECCCCCCEEEE
Confidence 999976421 22466789999999999999999999999999999 4433222223344689999999
Q ss_pred EEeC------CCCEEEEEc-CCcEEEEe
Q 010287 492 AWHP------SENSIACAA-SNSLYMYY 512 (513)
Q Consensus 492 ~~sp------~~~~la~~~-~~~~~i~~ 512 (513)
+|+| ++++||+++ ++.++||+
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEECc
Confidence 9986 688999887 67788986
No 53
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=8.1e-37 Score=280.04 Aligned_cols=258 Identities=15% Similarity=0.187 Sum_probs=195.7
Q ss_pred cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
..+|.+.|++++|+|+|++||+|+.|++|+|||+.++.. .....+.+|.
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~---------------------~~~~~l~gH~---------- 57 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ---------------------ILIADLRGHE---------- 57 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE---------------------EEEEEEECCS----------
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc---------------------EEEEEEcCCC----------
Confidence 458999999999999999999999999999999876532 1335678898
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
..|.+++|+|..++.+|++++.|++|++||++++......
T Consensus 58 --~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~-------------------------------------- 97 (316)
T 3bg1_A 58 --GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSH-------------------------------------- 97 (316)
T ss_dssp --SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEE--------------------------------------
T ss_pred --ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEE--------------------------------------
Confidence 8899999975434679999999999999999875422110
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC--CCEEEEE-cCCeEEEEEcCCCccee
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSF 267 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~vwd~~~~~~~~ 267 (513)
.+.+|...|.+++|+|+ +.+|++| .|++|++||++......
T Consensus 98 ------------------------------------~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~ 141 (316)
T 3bg1_A 98 ------------------------------------EHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE 141 (316)
T ss_dssp ------------------------------------EECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE
T ss_pred ------------------------------------EccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc
Confidence 13578888999999997 7899998 79999999998653221
Q ss_pred eecccCccccccccCCeEEEEEeCCC----------------CeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCC
Q 010287 268 NIVDVKPANMEDLTEVITSAEFHPTH----------------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 331 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~----------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 331 (513)
.. ..+.+|...|.+++|+|+. ..+|++++.|+.|++||++..... .....
T Consensus 142 ~~-----~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-~~~~~-------- 207 (316)
T 3bg1_A 142 VK-----KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW-KEEQK-------- 207 (316)
T ss_dssp EC-----CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE-EEEEC--------
T ss_pred ee-----eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc-ceeee--------
Confidence 10 1456788999999999972 168999999999999998654210 00112
Q ss_pred CccccccccccEEEEEEeecC----CEEEEEeC-CeEEEEEccCCC--C-CeeeeecccccccccccccccCCccceeeE
Q 010287 332 TRSFFTEIIASISDIKFARNG----RHILSRDY-MTLKLWDINMDS--G-PVATFQVHEHLRPKLCDLYENDSIFDKFEC 403 (513)
Q Consensus 332 ~~~~~~~~~~~v~~i~~sp~~----~~l~~~~~-~~v~iwd~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (513)
+.+|...|.+++|+|++ .+|++++. ++|++|++.... . ....+..|... |+++
T Consensus 208 ----l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~---------------v~~v 268 (316)
T 3bg1_A 208 ----LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDV---------------VWHV 268 (316)
T ss_dssp ----CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSC---------------EEEE
T ss_pred ----cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCc---------------EEEE
Confidence 45677899999999986 78998875 999999987511 1 12233334332 5699
Q ss_pred EEeCCCCEEEEEeCCCcEEEEecCC
Q 010287 404 CLSGDGGRVATGSYSNLFRVFGCSE 428 (513)
Q Consensus 404 ~~s~~~~~l~~~~~dg~i~vwd~~~ 428 (513)
+|+|++++|++++.|+.|++|+...
T Consensus 269 ~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 269 SWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEcCCCCEEEEEcCCCeEEEEEECC
Confidence 9999999999999999999999763
No 54
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=8.5e-36 Score=281.78 Aligned_cols=300 Identities=13% Similarity=0.176 Sum_probs=227.5
Q ss_pred ccccccccEEEEEEcCCC-CEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287 30 EEVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (513)
...+|.+.|++++|+|++ ++||+|+.||.|+|||+.+.+.. ......+|.
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------~~~~~~~h~-------- 118 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT---------------------SFIQGMGPG-------- 118 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE---------------------EEECCCSTT--------
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc---------------------eeeecCCcC--------
Confidence 345799999999999998 99999999999999998765531 222334677
Q ss_pred ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (513)
Q Consensus 109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 188 (513)
..|.+++|+|. ++.+|++++.|+.|++||+.+........
T Consensus 119 ----~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----------------------------------- 158 (383)
T 3ei3_B 119 ----DAITGMKFNQF-NTNQLFVSSIRGATTLRDFSGSVIQVFAK----------------------------------- 158 (383)
T ss_dssp ----CBEEEEEEETT-EEEEEEEEETTTEEEEEETTSCEEEEEEC-----------------------------------
T ss_pred ----CceeEEEeCCC-CCCEEEEEeCCCEEEEEECCCCceEEEec-----------------------------------
Confidence 88999999652 45799999999999999998643222110
Q ss_pred ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCccee
Q 010287 189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 267 (513)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~ 267 (513)
...|...|.+++|+|++++|+++ .|+.|++||++ ++...
T Consensus 159 ---------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~ 198 (383)
T 3ei3_B 159 ---------------------------------------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIF 198 (383)
T ss_dssp ---------------------------------------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEE
T ss_pred ---------------------------------------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEE
Confidence 12455779999999999999998 79999999995 33322
Q ss_pred eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287 268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 347 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 347 (513)
.+..|...|.+++|+|++..+|++++.|+.|++||+++..........+ +|...|.+++
T Consensus 199 --------~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~~~~v~~~~ 257 (383)
T 3ei3_B 199 --------KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-------------PHEKPVNAAY 257 (383)
T ss_dssp --------EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-------------ECSSCEEEEE
T ss_pred --------EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-------------cCCCceEEEE
Confidence 4577999999999999993399999999999999998854322212222 3557899999
Q ss_pred Eee-cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccc----cccccccCCccceeeEEEeCCCCEEEEEeCCCcE
Q 010287 348 FAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPK----LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 421 (513)
Q Consensus 348 ~sp-~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 421 (513)
|+| ++.+|++++. +.|++||+++ ++....+..|...... +...+.. -..+..++|+|++++ +++.|+.|
T Consensus 258 ~s~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~s~dg~~--s~s~d~~i 332 (383)
T 3ei3_B 258 FNPTDSTKLLTTDQRNEIRVYSSYD-WSKPDQIIIHPHRQFQHLTPIKATWHP--MYDLIVAGRYPDDQL--LLNDKRTI 332 (383)
T ss_dssp ECTTTSCEEEEEESSSEEEEEETTB-TTSCSEEEECCBCCCTTSCCCCCEECS--SSSEEEEECBCCTTT--CTTCCCCE
T ss_pred EcCCCCCEEEEEcCCCcEEEEECCC-CccccccccccccccccccceEEeccC--CCCceEEEecCCccc--ccCCCCeE
Confidence 999 9999999875 9999999997 6776777665432110 0000000 012335777788877 78899999
Q ss_pred EEEecCCCCccceeecC--CCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 422 RVFGCSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 422 ~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
++||+.+++ ....+.+ +...+..++|+|++++|++|+ |+.|++
T Consensus 333 ~iwd~~~~~-~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~i 377 (383)
T 3ei3_B 333 DIYDANSGG-LVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILI 377 (383)
T ss_dssp EEEETTTCC-EEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEE
T ss_pred EEEecCCCc-eeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEE
Confidence 999999874 4466665 456777789999999999997 999999
No 55
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-36 Score=289.20 Aligned_cols=321 Identities=12% Similarity=0.187 Sum_probs=242.9
Q ss_pred cccccccccceeccc-cccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcc
Q 010287 12 AQPLEWKFSQVFGER-TAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (513)
Q Consensus 12 ~~~~~w~~~~~~~~~-~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (513)
.....|++... +. .......|...|++++|+|++++||+|+.||.|++|++.+... ..
T Consensus 45 ~~v~iw~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-------------------~~ 103 (416)
T 2pm9_A 45 SSLELWSLLAA--DSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-------------------AI 103 (416)
T ss_dssp CCCEEEESSSG--GGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-------------------CC
T ss_pred CeEEEEEccCC--CCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-------------------cc
Confidence 35667877652 21 1334557899999999999999999999999999999876221 01
Q ss_pred eEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccC
Q 010287 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (513)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (513)
.....+.+|. ..|.+++|+|. ++.+|++++.|+.|++||+.+++........
T Consensus 104 ~~~~~~~~h~------------~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--------------- 155 (416)
T 2pm9_A 104 NSMARFSNHS------------SSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTP--------------- 155 (416)
T ss_dssp CEEEECCCSS------------SCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCC---------------
T ss_pred cchhhccCCc------------cceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCccccccccc---------------
Confidence 1335567788 88999999763 1679999999999999999876411000000
Q ss_pred cccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CCEEEE
Q 010287 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFIS 249 (513)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s 249 (513)
+ .......|...|.+++|+|+ +.+|++
T Consensus 156 ----------------------------~------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~ 183 (416)
T 2pm9_A 156 ----------------------------L------------------------TPGQSMSSVDEVISLAWNQSLAHVFAS 183 (416)
T ss_dssp ----------------------------B------------------------CCCCSCCSSCCCCEEEECSSCTTEEEE
T ss_pred ----------------------------c------------------------ccccccCCCCCeeEEEeCCCCCcEEEE
Confidence 0 00002467788999999998 788888
Q ss_pred E-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC---cEEEEEcCCcccccccceeec
Q 010287 250 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSKLFE 325 (513)
Q Consensus 250 ~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~ 325 (513)
+ .|+.|++||+++++....+.. .....+|...|.+++|+|++..++++++.|+ .|++||++++... ...
T Consensus 184 ~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~---~~~-- 256 (416)
T 2pm9_A 184 AGSSNFASIWDLKAKKEVIHLSY--TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP---LQT-- 256 (416)
T ss_dssp ESSSSCEEEEETTTTEEEEEECC--CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC---SBC--
T ss_pred EcCCCCEEEEECCCCCcceEEec--cccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC---cEE--
Confidence 8 799999999997665433210 0111234788999999999767999999999 9999999886321 122
Q ss_pred cccCCCCccccc-cccccEEEEEEee-cCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceee
Q 010287 326 EQEAPGTRSFFT-EIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 402 (513)
Q Consensus 326 ~~~~~~~~~~~~-~~~~~v~~i~~sp-~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (513)
+. +|...|.+++|+| ++.+|++++. +.|++||+++ ++++..+..|... |++
T Consensus 257 ----------~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~---------------v~~ 310 (416)
T 2pm9_A 257 ----------LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES-AEQLSQFPARGNW---------------CFK 310 (416)
T ss_dssp ----------CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS-CCEEEEEECSSSC---------------CCC
T ss_pred ----------eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC-CccceeecCCCCc---------------eEE
Confidence 23 5668899999999 8999999875 9999999997 8888888887765 458
Q ss_pred EEEeCCC-CEEEEEeCCCcEEEEecCCCCcccee----------------------------------ecCCCCceeEEE
Q 010287 403 CCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTT----------------------------------LEASKNPMRRQV 447 (513)
Q Consensus 403 ~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~----------------------------------~~~~~~~v~~~~ 447 (513)
++|+|++ .+|++++.|+.|++|++.+....... ...+..++..++
T Consensus 311 ~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (416)
T 2pm9_A 311 TKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAH 390 (416)
T ss_dssp EEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCE
T ss_pred EEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceE
Confidence 9999999 89999999999999999876433211 111667888999
Q ss_pred EcCCCCceeeecCCCeEEE
Q 010287 448 QTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 448 ~~~~~~~l~~~~~d~~i~~ 466 (513)
|+|+|++|++++.|+.|++
T Consensus 391 ~s~dg~~la~~~~d~~v~~ 409 (416)
T 2pm9_A 391 WAFGGKLVQITPDGKGVSI 409 (416)
T ss_dssp EETTTEEECBCTTSSCBCC
T ss_pred EeeCCeEEEEeCCCCeEEE
Confidence 9999999999999999998
No 56
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.4e-35 Score=281.75 Aligned_cols=299 Identities=10% Similarity=0.118 Sum_probs=230.5
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
...+|.+.|++++|+| ++||+|+.||.|+||++.+.+.. ..+.....+.+|.
T Consensus 11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~-----------------~~~~~~~~~~~h~--------- 62 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE-----------------NPKDKSYSHFVHK--------- 62 (397)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC-----------------CGGGGEEEEECCT---------
T ss_pred hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc-----------------cCCCcceEEecCC---------
Confidence 3457999999999999 79999999999999998776521 1112234556777
Q ss_pred cccccceeEEEeec--CCC---ceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCC
Q 010287 110 EIEEKINKIRWCQS--ANS---ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (513)
Q Consensus 110 ~~~~~i~~i~~~~~--~~~---~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 184 (513)
..|.+++|+|. .++ .+|++++.|+.|++|++.+++....
T Consensus 63 ---~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~--------------------------------- 106 (397)
T 1sq9_A 63 ---SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK--------------------------------- 106 (397)
T ss_dssp ---TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC---------------------------------
T ss_pred ---CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc---------------------------------
Confidence 88999999873 126 7999999999999999987642000
Q ss_pred ccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccc-----cCCeEEEEec----cCCCE-EEEE-cCC
Q 010287 185 CGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAH-----DYHINSISNN----SDGET-FISA-DDL 253 (513)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~----~~~~~-l~s~-~d~ 253 (513)
.....+..| ...|.+++|+ |++++ |+++ .|+
T Consensus 107 --------------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg 148 (397)
T 1sq9_A 107 --------------------------------------VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG 148 (397)
T ss_dssp --------------------------------------EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS
T ss_pred --------------------------------------ccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC
Confidence 000012344 4779999999 99999 9988 799
Q ss_pred eEEEEEcCC------CcceeeecccCc-ccc-------ccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccc
Q 010287 254 RINLWNLEI------SNQSFNIVDVKP-ANM-------EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 319 (513)
Q Consensus 254 ~i~vwd~~~------~~~~~~~~~~~~-~~~-------~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 319 (513)
.|++||+++ ..... ..+ ..+ ..|...|.+++|+|++ +|++++.||.|++||+++++.
T Consensus 149 ~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~--- 219 (397)
T 1sq9_A 149 TTYIWKFHPFADESNSLTLN----WSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRP--- 219 (397)
T ss_dssp CEEEEEEESSSSHHHHTTTC----CCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEE---
T ss_pred cEEEEeCCccccccccceee----ccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCce---
Confidence 999999986 33322 000 022 4478899999999997 899999999999999988654
Q ss_pred cceeeccccCCCCccccccc---cccEEEEEEeecCCEEEEEe-C---CeEEEEEccCCCCCeeeeec------------
Q 010287 320 HSKLFEEQEAPGTRSFFTEI---IASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQV------------ 380 (513)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~---~~~v~~i~~sp~~~~l~~~~-~---~~v~iwd~~~~~~~~~~~~~------------ 380 (513)
+..+.. ..+| ...|.+++|+|++++|++++ + +.|++||++. ++.+..+..
T Consensus 220 -~~~~~~---------~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~ 288 (397)
T 1sq9_A 220 -LYNFES---------QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEF 288 (397)
T ss_dssp -EEEEEC---------CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCB
T ss_pred -eEEEec---------cccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC-CcccceeccCccccccccccc
Confidence 333332 0114 57899999999999999865 6 8999999996 777777776
Q ss_pred -ccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeec------CC--------------
Q 010287 381 -HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE------AS-------------- 439 (513)
Q Consensus 381 -~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------~~-------------- 439 (513)
|... |.+++|+|++++|++++.||.|++||+.++ .....+. .|
T Consensus 289 ~~~~~---------------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 352 (397)
T 1sq9_A 289 AHSSW---------------VMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDIEIEEDILAVDEHGDSL 352 (397)
T ss_dssp SBSSC---------------EEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCGGGCSSGGGCCCBCTTSCBC
T ss_pred ccCCc---------------EEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEecccCcccchhhhhccccccccc
Confidence 4433 569999999999999999999999999987 4456677 77
Q ss_pred -CCceeEEEEcCCC----------CceeeecCCCeEEE
Q 010287 440 -KNPMRRQVQTPSR----------PSRPLGSLSGVVRR 466 (513)
Q Consensus 440 -~~~v~~~~~~~~~----------~~l~~~~~d~~i~~ 466 (513)
..+|..++|+|++ ++|++++.||.|++
T Consensus 353 ~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~i 390 (397)
T 1sq9_A 353 AEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW 390 (397)
T ss_dssp SSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred cCCceeEEEeccccccccccccccceEEEecCCCcEEE
Confidence 8999999999998 79999999999999
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.4e-35 Score=285.13 Aligned_cols=322 Identities=11% Similarity=0.188 Sum_probs=243.9
Q ss_pred ccccccccE-EEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287 30 EEVQEVDII-SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (513)
Q Consensus 30 ~~~~h~~~V-~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (513)
...+|.+.| +|+.| ++++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~-----------------------~~~~~~~h~-------- 162 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-----------------------FLLQLSGHD-------- 162 (464)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS--------
T ss_pred EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc-----------------------EEEEEeCCC--------
Confidence 455787774 66666 56799999999999999987655 335677888
Q ss_pred ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (513)
Q Consensus 109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 188 (513)
+.|.+++|+| ++ .+++++.||+|++||+.+++....
T Consensus 163 ----~~V~~l~~~~--~~-~l~s~s~dg~i~vwd~~~~~~~~~------------------------------------- 198 (464)
T 3v7d_B 163 ----GGVWALKYAH--GG-ILVSGSTDRTVRVWDIKKGCCTHV------------------------------------- 198 (464)
T ss_dssp ----SCEEEEEECS--TT-EEEEEETTSCEEEEETTTTEEEEE-------------------------------------
T ss_pred ----cCEEEEEEcC--CC-EEEEEeCCCCEEEEECCCCcEEEE-------------------------------------
Confidence 8899999954 54 899999999999999998764432
Q ss_pred ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEec--cCCCEEEEE-cCCeEEEEEcCCCcc
Q 010287 189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNN--SDGETFISA-DDLRINLWNLEISNQ 265 (513)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~-~d~~i~vwd~~~~~~ 265 (513)
+.+|...|.+++|+ +++++++++ .|+.|++||+++...
T Consensus 199 ---------------------------------------~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~ 239 (464)
T 3v7d_B 199 ---------------------------------------FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 239 (464)
T ss_dssp ---------------------------------------ECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCC
T ss_pred ---------------------------------------ECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcc
Confidence 34677889999998 477889998 799999999986653
Q ss_pred eeeeccc------------C---ccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCC
Q 010287 266 SFNIVDV------------K---PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 330 (513)
Q Consensus 266 ~~~~~~~------------~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 330 (513)
....... . ...+.+|...+.++ ++++ .++++++.||.|++||+++++. +..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~-~~l~~~~~d~~i~vwd~~~~~~----~~~------- 305 (464)
T 3v7d_B 240 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVAQMKC----LYI------- 305 (464)
T ss_dssp C------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEET-TEEEEEETTSCEEEEETTTTEE----EEE-------
T ss_pred cccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCC-CEEEEEeCCCeEEEEECCCCcE----EEE-------
Confidence 3211000 0 01356788888887 4566 7999999999999999988765 233
Q ss_pred CCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCC
Q 010287 331 GTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 409 (513)
Q Consensus 331 ~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 409 (513)
+.+|...|.+++|+|+++++++|+. +.|++||+++ ++.+..+.+|... |.+++|+ +
T Consensus 306 -----~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~---------------v~~~~~~--~ 362 (464)
T 3v7d_B 306 -----LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQGHTAL---------------VGLLRLS--D 362 (464)
T ss_dssp -----ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECCCSSC---------------EEEEEEC--S
T ss_pred -----ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeCCCCc---------------EEEEEEc--C
Confidence 3445578999999999999999875 9999999996 8888888888765 4478886 5
Q ss_pred CEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCC-ccccccCCe
Q 010287 410 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANG-NAFDFSMKL 488 (513)
Q Consensus 410 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~-~~~~~~~~i 488 (513)
++|++++.||.|++||+.++... .. ..+...+..++++++++++++|+ |+.|++ |+....+... ....|...|
T Consensus 363 ~~l~s~s~dg~v~vwd~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~~~~-dg~i~i---wd~~~g~~~~~~~~~~~~~v 436 (464)
T 3v7d_B 363 KFLVSAAADGSIRGWDANDYSRK-FS-YHHTNLSAITTFYVSDNILVSGS-ENQFNI---YNLRSGKLVHANILKDADQI 436 (464)
T ss_dssp SEEEEEETTSEEEEEETTTCCEE-EE-EECTTCCCEEEEEECSSEEEEEE-TTEEEE---EETTTCCEEESCTTTTCSEE
T ss_pred CEEEEEeCCCcEEEEECCCCcee-ee-ecCCCCccEEEEEeCCCEEEEec-CCeEEE---EECCCCcEEehhhccCCCcE
Confidence 79999999999999999976432 22 23566777889999999999998 899999 3332222222 244578999
Q ss_pred eEEEEeCCCCEEEEEcCCcEEEE
Q 010287 489 LHLAWHPSENSIACAASNSLYMY 511 (513)
Q Consensus 489 ~~~~~sp~~~~la~~~~~~~~i~ 511 (513)
.+++|+ ...+++++++++..++
T Consensus 437 ~~v~~~-~~~l~~~~~~~g~~~i 458 (464)
T 3v7d_B 437 WSVNFK-GKTLVAAVEKDGQSFL 458 (464)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEE
T ss_pred EEEEec-CCEEEEEEEeCCeEEE
Confidence 999998 3344555556665544
No 58
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3e-35 Score=276.28 Aligned_cols=317 Identities=14% Similarity=0.147 Sum_probs=227.0
Q ss_pred ccccccEEEEEEcCC----CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEecc--ccCCCCcccc
Q 010287 32 VQEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE--FQSHEPEFDY 105 (513)
Q Consensus 32 ~~h~~~V~~v~~sp~----g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~~~ 105 (513)
.+|.++|++++|+|+ ..++++++.++.|+||++.+++.. ..... ...|.
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--------------------~~~~~~~~~~~~----- 69 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--------------------RLLQSYVDADAD----- 69 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--------------------EEEEEEECSCTT-----
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--------------------EeeeeccccCCC-----
Confidence 479999999999984 456666666779999998765531 00011 11244
Q ss_pred cccccccccceeEEEeecCC--CceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCC
Q 010287 106 LKSLEIEEKINKIRWCQSAN--SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (513)
Q Consensus 106 ~~~~~~~~~i~~i~~~~~~~--~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 183 (513)
..|++++|+|... +.+|++++.||.|++||+.+++....
T Consensus 70 -------~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-------------------------------- 110 (366)
T 3k26_A 70 -------ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKH-------------------------------- 110 (366)
T ss_dssp -------CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEE--------------------------------
T ss_pred -------CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeee--------------------------------
Confidence 7799999988533 67999999999999999987754332
Q ss_pred CccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEEEEE-cCCeEEEEEcC
Q 010287 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLE 261 (513)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~vwd~~ 261 (513)
+.+|...|.+++|+| ++++|+++ .|+.|++||++
T Consensus 111 --------------------------------------------~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 111 --------------------------------------------YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp --------------------------------------------EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred --------------------------------------------ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence 346778899999999 89999998 79999999998
Q ss_pred CCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccce--eecc----------ccC
Q 010287 262 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK--LFEE----------QEA 329 (513)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~----------~~~ 329 (513)
+++....+. .+..|...|.+++|+|++ .+|++++.||.|++||+++++....... .+.. ...
T Consensus 147 ~~~~~~~~~-----~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (366)
T 3k26_A 147 TDTLVAIFG-----GVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIH 220 (366)
T ss_dssp TTEEEEEEC-----STTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEEC
T ss_pred cCeEEEEec-----ccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeec
Confidence 765443221 236789999999999998 8999999999999999988654211000 0000 000
Q ss_pred CCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC
Q 010287 330 PGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 408 (513)
Q Consensus 330 ~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 408 (513)
.........|...|.+++|+ +.++++++. +.|++||+.........+..+......+..+... -..+++++|+|+
T Consensus 221 ~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~ 296 (366)
T 3k26_A 221 FPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMD 296 (366)
T ss_dssp CCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEEC
T ss_pred cCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCC
Confidence 00111223478899999999 778888875 9999999986332222221111111111100000 011458899999
Q ss_pred --CCEEEEEeCCCcEEEEecCCCCcc---ceeecCC--CCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 409 --GGRVATGSYSNLFRVFGCSEGSAE---STTLEAS--KNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 409 --~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
+++|++|+.||.|++||+.++... ...+..| ..+|..++|+|++++|++++.||.|++
T Consensus 297 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 361 (366)
T 3k26_A 297 FWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWR 361 (366)
T ss_dssp TTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEE
Confidence 999999999999999999987432 2366777 799999999999999999999999999
No 59
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.9e-35 Score=278.08 Aligned_cols=314 Identities=15% Similarity=0.199 Sum_probs=229.2
Q ss_pred ccccccccEEEEEEcC-CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccc
Q 010287 30 EEVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (513)
...+|.+.|++++|+| ++++||+|+.||.|+||++.+........... ..........+|.
T Consensus 38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-------- 99 (408)
T 4a11_B 38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA----------VCSIGRDHPDVHR-------- 99 (408)
T ss_dssp ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE----------EEEECTTCTTCCS--------
T ss_pred eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc----------cccccccccccCC--------
Confidence 4556999999999999 99999999999999999998766421110000 0000001123466
Q ss_pred ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (513)
Q Consensus 109 ~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 188 (513)
..|.+++|+|. ++.+|++++.|+.|++||+.+++.....
T Consensus 100 ----~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~------------------------------------ 138 (408)
T 4a11_B 100 ----YSVETVQWYPH-DTGMFTSSSFDKTLKVWDTNTLQTADVF------------------------------------ 138 (408)
T ss_dssp ----SCEEEEEECTT-CTTCEEEEETTSEEEEEETTTTEEEEEE------------------------------------
T ss_pred ----CcEEEEEEccC-CCcEEEEEeCCCeEEEeeCCCCccceec------------------------------------
Confidence 88999999652 4568999999999999999987654432
Q ss_pred ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC---CCEEEEE-cCCeEEEEEcCCCc
Q 010287 189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---GETFISA-DDLRINLWNLEISN 264 (513)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~-~d~~i~vwd~~~~~ 264 (513)
.+...+.++++++. +.+++++ .++.|++||+++++
T Consensus 139 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 139 -----------------------------------------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp -----------------------------------------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred -----------------------------------------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 23355788888874 4588888 79999999998765
Q ss_pred ceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc---cCCCCccccccccc
Q 010287 265 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ---EAPGTRSFFTEIIA 341 (513)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 341 (513)
... .+..|...|.+++|+|++..+|++++.||.|++||++++... ...+... ..........+|..
T Consensus 178 ~~~--------~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 246 (408)
T 4a11_B 178 CSH--------ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC---LITLDQHNGKKSQAVESANTAHNG 246 (408)
T ss_dssp CCE--------EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC---SEECCTTTTCSCCCTTTSSCSCSS
T ss_pred eee--------eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc---cccccccccccceeeccccccccC
Confidence 443 456789999999999998457999999999999999886532 2222221 11122233467889
Q ss_pred cEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCc
Q 010287 342 SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 420 (513)
Q Consensus 342 ~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 420 (513)
.|.+++|+|++++|++++. +.|++||+.+ ++....+..+..... ...+........+..+++++.|+.
T Consensus 247 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 315 (408)
T 4a11_B 247 KVNGLCFTSDGLHLLTVGTDNRMRLWNSSN-GENTLVNYGKVCNNS----------KKGLKFTVSCGCSSEFVFVPYGST 315 (408)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTT-CCBCCCCCCCCCCCC----------SSCCCCEECCSSSSCEEEEEETTE
T ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCC-Cccceeccccccccc----------cccceeEEecCCCceEEEEecCCE
Confidence 9999999999999999875 9999999986 554443332221100 000111222334556777788999
Q ss_pred EEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 421 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 421 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
|++||+.++ .....+.+|..+|.+++|+|++++|++++.||.|++
T Consensus 316 i~v~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 360 (408)
T 4a11_B 316 IAVYTVYSG-EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA 360 (408)
T ss_dssp EEEEETTTC-CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred EEEEECcCC-cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEE
Confidence 999999987 555788999999999999999999999999999999
No 60
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-36 Score=286.79 Aligned_cols=300 Identities=11% Similarity=0.127 Sum_probs=215.4
Q ss_pred ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (513)
Q Consensus 34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (513)
|.++|++++|+|+|++||+|+.||.|+||++.++.. .....+.+|. .
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~---------------------~~~~~~~~h~------------~ 56 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW---------------------KHARTFSDHD------------K 56 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE---------------------EECCCBCCCS------------S
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce---------------------EEEEEEecCC------------c
Confidence 568999999999999999999999999999986521 1335677888 8
Q ss_pred cceeEEEeecCCCceEEEeecCCeEEEEEccCce-eeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
.|.+++|+| ++.+|++++.|++|++||+.++. ....
T Consensus 57 ~v~~~~~s~--~~~~l~s~s~d~~v~vwd~~~~~~~~~~----------------------------------------- 93 (377)
T 3dwl_C 57 IVTCVDWAP--KSNRIVTCSQDRNAYVYEKRPDGTWKQT----------------------------------------- 93 (377)
T ss_dssp CEEEEEECT--TTCCEEEEETTSSEEEC------CCCCE-----------------------------------------
T ss_pred eEEEEEEeC--CCCEEEEEeCCCeEEEEEcCCCCceeee-----------------------------------------
Confidence 899999965 67899999999999999998765 1111
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
..+.+|...|.+++|+|++++|+++ .|+.|++||+++++.....
T Consensus 94 ---------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-- 138 (377)
T 3dwl_C 94 ---------------------------------LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVS-- 138 (377)
T ss_dssp ---------------------------------EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCC--
T ss_pred ---------------------------------eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceee--
Confidence 0134678889999999999999998 7999999999876531100
Q ss_pred cCcccccc-ccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccC--CCCccccccccccEEEEEE
Q 010287 272 VKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA--PGTRSFFTEIIASISDIKF 348 (513)
Q Consensus 272 ~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~i~~ 348 (513)
..+.. |...|.+++|+|++ ++|++++.|+.|++||++.............+... ......+ +|...|.+++|
T Consensus 139 ---~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~ 213 (377)
T 3dwl_C 139 ---KHLKRPLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGF 213 (377)
T ss_dssp ---EEECSSCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEE
T ss_pred ---eEeecccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEE
Confidence 13455 89999999999998 89999999999999999754422111000000000 0001112 67789999999
Q ss_pred eecCCEEEEEeC-CeEEEEEccCCCCC----eeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEE
Q 010287 349 ARNGRHILSRDY-MTLKLWDINMDSGP----VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 423 (513)
Q Consensus 349 sp~~~~l~~~~~-~~v~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 423 (513)
+|++++|++++. +.|++||+.. ++. +..+..|... |.+++|+|++++|++++.++.+ +
T Consensus 214 sp~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~~~~~~~~-~ 276 (377)
T 3dwl_C 214 SPSGNALAYAGHDSSVTIAYPSA-PEQPPRALITVKLSQLP---------------LRSLLWANESAIVAAGYNYSPI-L 276 (377)
T ss_dssp CTTSSCEEEEETTTEEC-CEECS-TTSCEEECCCEECSSSC---------------EEEEEEEETTEEEEEESSSSEE-E
T ss_pred CCCCCEEEEEeCCCcEEEEECCC-CCCcceeeEeecCCCCc---------------eEEEEEcCCCCEEEEEcCCcEE-E
Confidence 999999999875 9999999997 555 6667777654 5599999999999998877665 6
Q ss_pred EecCCCC-ccce--------------------------------------------------eecCCCCceeEEEEcCCC
Q 010287 424 FGCSEGS-AEST--------------------------------------------------TLEASKNPMRRQVQTPSR 452 (513)
Q Consensus 424 wd~~~~~-~~~~--------------------------------------------------~~~~~~~~v~~~~~~~~~ 452 (513)
|+..... .... ....|...|.++.+.+..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~ 356 (377)
T 3dwl_C 277 LQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGT 356 (377)
T ss_dssp ECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEE
T ss_pred EEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCC
Confidence 7655221 0000 111388999999876554
Q ss_pred C----ceeeecCCCeEEE
Q 010287 453 P----SRPLGSLSGVVRR 466 (513)
Q Consensus 453 ~----~l~~~~~d~~i~~ 466 (513)
. .+++|+.||.|++
T Consensus 357 ~~~~~~~~s~g~Dg~i~i 374 (377)
T 3dwl_C 357 PGNITAFTSSGTDGRVVL 374 (377)
T ss_dssp TTEEEEEEEEETTSEEEE
T ss_pred CCceEEEEeecCCCcEEE
Confidence 4 5999999999998
No 61
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=277.70 Aligned_cols=288 Identities=12% Similarity=0.177 Sum_probs=221.3
Q ss_pred cccccccEEEEEEcCCCC-EEEeecC---CCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccc
Q 010287 31 EVQEVDIISAIEFDKSGD-HLATGDR---GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~g~-~latg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (513)
..+|.+.|++++|+|++. ++++|+. ||.|+||++.+++.. .....+|.
T Consensus 14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~----------------------~~~~~~~~------ 65 (357)
T 3i2n_A 14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK----------------------LLREIEKA------ 65 (357)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE----------------------EEEEEEES------
T ss_pred ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc----------------------ceeeeccc------
Confidence 346999999999999985 5567776 999999999876531 11122455
Q ss_pred ccccccccceeEEEeecC-CCceEEEeecCCeEEEEEccCce-eeeeeccccCCCcccCCCCcccCcccccCceeccCCC
Q 010287 107 KSLEIEEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (513)
Q Consensus 107 ~~~~~~~~i~~i~~~~~~-~~~~l~s~s~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 184 (513)
..|.+++|+|.. ++.+|++++.||.|++||+.+++ ...
T Consensus 66 ------~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------------------------------- 105 (357)
T 3i2n_A 66 ------KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---------------------------------- 105 (357)
T ss_dssp ------SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE----------------------------------
T ss_pred ------CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE----------------------------------
Confidence 889999997632 16799999999999999998764 111
Q ss_pred ccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEE------eccCCCEEEEE-cCCeEEE
Q 010287 185 CGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSIS------NNSDGETFISA-DDLRINL 257 (513)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~------~~~~~~~l~s~-~d~~i~v 257 (513)
.+.+|...|.+++ |+|++++|+++ .|+.|++
T Consensus 106 ------------------------------------------~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~v 143 (357)
T 3i2n_A 106 ------------------------------------------SVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKV 143 (357)
T ss_dssp ------------------------------------------EECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEE
T ss_pred ------------------------------------------EEEecccceEEEeeccccccCCCccEEEEEeCCCeEEE
Confidence 1357778899885 57899999998 7999999
Q ss_pred EEcCCCcceeeecccCcccccc-ccCCeEEEE----EeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCC
Q 010287 258 WNLEISNQSFNIVDVKPANMED-LTEVITSAE----FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 332 (513)
Q Consensus 258 wd~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~----~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 332 (513)
||++++......+. ...+ +...+.++. |+|++ .++++++.||.|++||+++++.. .
T Consensus 144 wd~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~---------- 204 (357)
T 3i2n_A 144 WDPRQKDDPVANME----PVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALR----W---------- 204 (357)
T ss_dssp ECTTSCSSCSEEEC----CCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEE----E----------
T ss_pred EeCCCCCCcceecc----ccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCcee----e----------
Confidence 99997663333211 1111 234788888 67888 89999999999999999887641 1
Q ss_pred ccccccccccEEEEEEee---cCCEEEEEeC-CeEEEEEccCCCCCeeeee-----cccccccccccccccCCccceeeE
Q 010287 333 RSFFTEIIASISDIKFAR---NGRHILSRDY-MTLKLWDINMDSGPVATFQ-----VHEHLRPKLCDLYENDSIFDKFEC 403 (513)
Q Consensus 333 ~~~~~~~~~~v~~i~~sp---~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~ 403 (513)
...|...|.+++|+| ++.+|++++. +.|++||++. ++....+. .|... |+++
T Consensus 205 ---~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~---------------v~~~ 265 (357)
T 3i2n_A 205 ---ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFASVSEKAHKST---------------VWQV 265 (357)
T ss_dssp ---EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEEEEEECCSSC---------------EEEE
T ss_pred ---ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceeeeccCCCcCC---------------EEEE
Confidence 133447899999999 8999999875 9999999986 55554443 45443 5699
Q ss_pred EEeCCCC-EEEEEeCCCcEEEEecCCCCc------------------cceeecCCCCceeEEEEcCCCCcee-eecCCCe
Q 010287 404 CLSGDGG-RVATGSYSNLFRVFGCSEGSA------------------ESTTLEASKNPMRRQVQTPSRPSRP-LGSLSGV 463 (513)
Q Consensus 404 ~~s~~~~-~l~~~~~dg~i~vwd~~~~~~------------------~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~ 463 (513)
+|+|+++ +|++++.||.|++||+..+.. ....+..|..+|.+++|+|++++|+ +++.|+.
T Consensus 266 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~ 345 (357)
T 3i2n_A 266 RHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQT 345 (357)
T ss_dssp EEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred EECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCc
Confidence 9999998 899999999999999986532 2456778999999999999999998 8999999
Q ss_pred EEE
Q 010287 464 VRR 466 (513)
Q Consensus 464 i~~ 466 (513)
|++
T Consensus 346 i~i 348 (357)
T 3i2n_A 346 VRV 348 (357)
T ss_dssp EEE
T ss_pred EEE
Confidence 999
No 62
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=8.1e-36 Score=278.69 Aligned_cols=196 Identities=12% Similarity=0.064 Sum_probs=152.4
Q ss_pred cccCCeEEEEeccCCCEEEEE---cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287 230 AHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 306 (513)
Q Consensus 230 ~h~~~v~~~~~~~~~~~l~s~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 306 (513)
.+...+.+++|+|||++++++ .|++|++||+++...... + .|...|.+++|+|++ +++++++. +.+
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~--------~-~~~~~V~~v~fspdg-~~l~s~s~-~~~ 199 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE--------I-ETRGEVKDLHFSTDG-KVVAYITG-SSL 199 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE--------E-ECSSCCCEEEECTTS-SEEEEECS-SCE
T ss_pred CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE--------e-CCCCceEEEEEccCC-ceEEeccc-eeE
Confidence 344568899999999998754 489999999997765432 2 367789999999999 88888875 556
Q ss_pred EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CC----eEEEEEccCCCCC----eee
Q 010287 307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YM----TLKLWDINMDSGP----VAT 377 (513)
Q Consensus 307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~----~v~iwd~~~~~~~----~~~ 377 (513)
++|+..++..... . ...+|...|.+++|+|+++++++++ ++ .+++|++.. ... ...
T Consensus 200 ~~~~~~~~~~~~~--~------------~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~-~~~~~~~~~~ 264 (365)
T 4h5i_A 200 EVISTVTGSCIAR--K------------TDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKS-GNTSVLRSKQ 264 (365)
T ss_dssp EEEETTTCCEEEE--E------------CCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET-TEEEEEEEEE
T ss_pred EEEEeccCcceee--e------------ecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccc-ceecceeeee
Confidence 6677666553211 0 1234557899999999999999875 33 678888874 221 123
Q ss_pred eecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceee
Q 010287 378 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 457 (513)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 457 (513)
+..|... |++++|+|||++||+|+.|+.|+|||+.+++.+...+++|..+|++++|+|++++||+
T Consensus 265 ~~~~~~~---------------V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS 329 (365)
T 4h5i_A 265 VTNRFKG---------------ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVAS 329 (365)
T ss_dssp EESSCSC---------------EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEE
T ss_pred ecCCCCC---------------eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEE
Confidence 3344433 5699999999999999999999999999885444456899999999999999999999
Q ss_pred ecCCCeEEE
Q 010287 458 GSLSGVVRR 466 (513)
Q Consensus 458 ~~~d~~i~~ 466 (513)
||.|++|+|
T Consensus 330 ~S~D~tvrv 338 (365)
T 4h5i_A 330 VSAANTIHI 338 (365)
T ss_dssp EETTSEEEE
T ss_pred EeCCCeEEE
Confidence 999999999
No 63
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-36 Score=281.34 Aligned_cols=300 Identities=7% Similarity=0.035 Sum_probs=216.9
Q ss_pred ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (513)
Q Consensus 34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (513)
-..+|.+++|||||+++|+++.|++|+ |.+..+ .+.+|. .
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~--------------------------~l~gh~------------~ 53 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK--------------------------DINCNS------------K 53 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS--------------------------CCSSBG------------G
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc--------------------------eecCCC------------c
Confidence 358999999999999999999999999 633322 346788 8
Q ss_pred cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (513)
Q Consensus 114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (513)
.|.+++|+| +| .++.+.+|+.+... ..
T Consensus 54 ~v~~V~FsP--dg-------~~~~~~~~~~~~~~---~~----------------------------------------- 80 (588)
T 2j04_A 54 NLFHVKEFP--LE-------FENKLDFELAQQNG---LL----------------------------------------- 80 (588)
T ss_dssp GTEEEEEEC--CC-------CCCTTTTSCCCSSC---SS-----------------------------------------
T ss_pred cEEEEEECC--CC-------CcceEEEEeCCCce---Ee-----------------------------------------
Confidence 899999976 54 44444444432211 10
Q ss_pred CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc
Q 010287 194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 272 (513)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~ 272 (513)
...|...|.+++|+|+|++|+++ .||.|++||.+. ...
T Consensus 81 ----------------------------------~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~---- 119 (588)
T 2j04_A 81 ----------------------------------NSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLT---- 119 (588)
T ss_dssp ----------------------------------TTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEE----
T ss_pred ----------------------------------ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eee----
Confidence 01335679999999999999998 799999999653 322
Q ss_pred CccccccccC-----CeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccc---cceeeccccCCCCccccccccccEE
Q 010287 273 KPANMEDLTE-----VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HSKLFEEQEAPGTRSFFTEIIASIS 344 (513)
Q Consensus 273 ~~~~~~~~~~-----~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~ 344 (513)
.+. |.. .+.+++|+|+| ++|++|+.||+|++||+.++..... .+..++.+ ..+|...|.
T Consensus 120 ---~l~-~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~--------~~gh~~~V~ 186 (588)
T 2j04_A 120 ---NLD-SKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS--------DAGSKDWVT 186 (588)
T ss_dssp ---ECC-CSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS--------CTTCCCCEE
T ss_pred ---ecc-CCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeecc--------cccccccEE
Confidence 234 443 59999999999 9999999999999999987643111 12333222 245678999
Q ss_pred EEEEeecCCEEEEEeCCeEEEEEccCCCCC---eeeee-cccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCc
Q 010287 345 DIKFARNGRHILSRDYMTLKLWDINMDSGP---VATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 420 (513)
Q Consensus 345 ~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 420 (513)
+++|+|+| +++++.|+.|++||+.. +.. ..++. +|... |.+++|+ +++|++++ ++.
T Consensus 187 sVawSPdg-Laass~D~tVrlWd~~~-~~~~~~~~tL~~~h~~~---------------V~svaFs--g~~LASa~-~~t 246 (588)
T 2j04_A 187 HIVWYEDV-LVAALSNNSVFSMTVSA-SSHQPVSRMIQNASRRK---------------ITDLKIV--DYKVVLTC-PGY 246 (588)
T ss_dssp EEEEETTE-EEEEETTCCEEEECCCS-SSSCCCEEEEECCCSSC---------------CCCEEEE--TTEEEEEC-SSE
T ss_pred EEEEcCCc-EEEEeCCCeEEEEECCC-CccccceeeecccccCc---------------EEEEEEE--CCEEEEEe-CCe
Confidence 99999999 55555679999999985 442 23453 55443 4589999 68999887 699
Q ss_pred EEEEecCCCCccceeecCCCCceeEEEE--cCCCCceeeecCCCeEEEec---------------------CCCCCcccc
Q 010287 421 FRVFGCSEGSAESTTLEASKNPMRRQVQ--TPSRPSRPLGSLSGVVRRVK---------------------GADNSALDA 477 (513)
Q Consensus 421 i~vwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~~~~---------------------~~~~~~~~~ 477 (513)
|++||+.++... ....+|...+..+.+ +|++..|+++++||. ++.. -|.....
T Consensus 247 IkLWd~~~~~~~-~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~-- 322 (588)
T 2j04_A 247 VHKIDLKNYSIS-SLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWN-- 322 (588)
T ss_dssp EEEEETTTTEEE-EEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTT--
T ss_pred EEEEECCCCeEE-EEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCC--
Confidence 999999976332 233389999999999 999999999999999 6511 1111100
Q ss_pred CCccccccCCeeEEEEeCCCCEEEEEc
Q 010287 478 NGNAFDFSMKLLHLAWHPSENSIACAA 504 (513)
Q Consensus 478 ~~~~~~~~~~i~~~~~sp~~~~la~~~ 504 (513)
....+++...|.+++|||||+.+|+++
T Consensus 323 ~l~~~~~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 323 EFNNYETTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp SSSSSCCEEEEEEEEECTTSSEEEEEE
T ss_pred ceeeeccceEEEEEEECCCCCEEEEEE
Confidence 011223355699999999999999886
No 64
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-35 Score=282.17 Aligned_cols=347 Identities=12% Similarity=0.121 Sum_probs=235.8
Q ss_pred ccccccEEEEEEcC-CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 32 ~~h~~~V~~v~~sp-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
.+|.+.|++++|+| ++++||+|+.||+|+|||+.+..... .++....+ +|.
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-----------------~~~~~~~~-~h~---------- 111 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-----------------VYSSSLTY-DCS---------- 111 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-----------------CCSCSEEE-ECS----------
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-----------------ccceeeec-cCC----------
Confidence 57899999999999 99999999999999999987622100 00000111 355
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEcc---CceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQ---EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 187 (513)
..|.+++|+| ++.+|++++.||+|++||+. .++.......+.-. .+.++|
T Consensus 112 --~~v~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~-----------------~~~~~~------ 164 (437)
T 3gre_A 112 --STVTQITMIP--NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIR-----------------KINLKN------ 164 (437)
T ss_dssp --SCEEEEEECT--TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEE-----------------EEEGGG------
T ss_pred --CCEEEEEEeC--CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeE-----------------EEEccC------
Confidence 8899999965 77799999999999999995 33332221111000 000000
Q ss_pred cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEE--eccCCCEEEEE-cCCeEEEEEcCCCc
Q 010287 188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSIS--NNSDGETFISA-DDLRINLWNLEISN 264 (513)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~l~s~-~d~~i~vwd~~~~~ 264 (513)
.++...+.++. +++++++|+++ .|+.|++||+++++
T Consensus 165 -----------------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 203 (437)
T 3gre_A 165 -----------------------------------------FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE 203 (437)
T ss_dssp -----------------------------------------GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC
T ss_pred -----------------------------------------cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Confidence 01445677777 66889999998 79999999999766
Q ss_pred ceeeecccCcccccc--ccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccccccccc
Q 010287 265 QSFNIVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 342 (513)
Q Consensus 265 ~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (513)
.... +.. |...|++++|+|++ .+|++++.||.|++||++++.. +..+. ..|...
T Consensus 204 ~~~~--------~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~----~~~~~-----------~~~~~~ 259 (437)
T 3gre_A 204 RLQI--------IENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVL----IRSWS-----------FGDHAP 259 (437)
T ss_dssp EEEE--------EECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEE----EEEEB-----------CTTCEE
T ss_pred eeEE--------EccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccE----EEEEe-----------cCCCCc
Confidence 5433 344 88999999999998 9999999999999999998664 33322 134467
Q ss_pred EEEEEEee----cCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccccccccc-----------ccCCccceeeEEEe
Q 010287 343 ISDIKFAR----NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLY-----------ENDSIFDKFECCLS 406 (513)
Q Consensus 343 v~~i~~sp----~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~s 406 (513)
|.+++|+| ++.+|++++. +.|++||+++ ++.+..+..|........-.. .......|++++|+
T Consensus 260 v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~ 338 (437)
T 3gre_A 260 ITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS 338 (437)
T ss_dssp EEEEEECTTTCTTEEEEEEESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE
T ss_pred eEEEEeccccCCCccEEEEEcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC
Confidence 99996664 6779999875 9999999996 777888877654332111100 00122246799999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCccceeecCCC---CceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCcccc
Q 010287 407 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK---NPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD 483 (513)
Q Consensus 407 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~ 483 (513)
++++|++|+.|+.|++||+.++ .....+.+|. ..+....+++...+++.. .+ .... ........
T Consensus 339 -~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~-~~~~~~~~ 405 (437)
T 3gre_A 339 -NDKILLTDEATSSIVMFSLNEL-SSSKAVISPSRFSDVFIPTQVTANLTMLLRK-MK---------RTST-HSVDDSLY 405 (437)
T ss_dssp -TTEEEEEEGGGTEEEEEETTCG-GGCEEEECC--CCCEEEEEEEETTEEEEEEE-CC----------------------
T ss_pred -CceEEEecCCCCeEEEEECCCc-ccceEEecccccCceEEEEEeecceEEEEEe-cc---------cccc-cccCcccc
Confidence 8899999999999999999987 4445666643 334455555554444433 00 0000 01112234
Q ss_pred ccCCeeEEEEeCC--CCEEEEEc-CCcEEEEe
Q 010287 484 FSMKLLHLAWHPS--ENSIACAA-SNSLYMYY 512 (513)
Q Consensus 484 ~~~~i~~~~~sp~--~~~la~~~-~~~~~i~~ 512 (513)
|...|++++|+++ +.+|++++ ++.+.||+
T Consensus 406 h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 406 HHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8999999999999 77888887 67788874
No 65
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.8e-35 Score=304.37 Aligned_cols=383 Identities=14% Similarity=0.156 Sum_probs=281.2
Q ss_pred ccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceE
Q 010287 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (513)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (513)
....|++.. +. .......|...|++++|+|++++||+|+.||.|+||++.+++.
T Consensus 36 ~v~iwd~~~--~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~----------------------- 89 (814)
T 3mkq_A 36 RVEIWNYET--QV-EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK----------------------- 89 (814)
T ss_dssp EEEEEETTT--TE-EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-----------------------
T ss_pred EEEEEECCC--Cc-eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----------------------
Confidence 345677654 11 2224457999999999999999999999999999999876653
Q ss_pred eccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCc-eeeeeeccccCCCcccCCCCcccCc
Q 010287 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSH 171 (513)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (513)
...+.+|. +.|.+++|+| ++.+|++++.||.|++||+.++ ........+.
T Consensus 90 ~~~~~~~~------------~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~--------------- 140 (814)
T 3mkq_A 90 VVDFEAHP------------DYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE--------------- 140 (814)
T ss_dssp EEEEECCS------------SCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCS---------------
T ss_pred EEEEecCC------------CCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCC---------------
Confidence 24567787 8899999965 7779999999999999999876 4333332221
Q ss_pred ccccCceecc-CCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc--CCCEEE
Q 010287 172 VSAIPKSYMA-NGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFI 248 (513)
Q Consensus 172 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~ 248 (513)
.....++|+| ++..+ ++++.++.+++|++..... .......+...+.+++|+| ++.+|+
T Consensus 141 ~~v~~~~~~p~~~~~l------------~~~~~dg~v~vwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 141 HFVMCVAFNPKDPSTF------------ASGCLDRTVKVWSLGQSTP------NFTLTTGQERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp SCEEEEEEETTEEEEE------------EEEETTSEEEEEETTCSSC------SEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred CcEEEEEEEcCCCCEE------------EEEeCCCeEEEEECCCCcc------eeEEecCCCCCEEEEEEEECCCCCEEE
Confidence 1223678888 77766 7788999999999865433 2222345558899999999 999999
Q ss_pred EE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287 249 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 327 (513)
Q Consensus 249 s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 327 (513)
++ .|+.|++||+.++.... .+.+|...|.+++|+|++ .++++++.||.|++||+.++.. ...+
T Consensus 203 ~~~~dg~i~~~d~~~~~~~~--------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~----~~~~--- 266 (814)
T 3mkq_A 203 TASDDLTIKIWDYQTKSCVA--------TLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKV----EKTL--- 266 (814)
T ss_dssp EECTTSEEEEEETTTTEEEE--------EEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCSE----EEEE---
T ss_pred EEeCCCEEEEEECCCCcEEE--------EEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcE----EEEe---
Confidence 99 79999999998765432 456789999999999999 8999999999999999988765 2333
Q ss_pred cCCCCccccccccccEEEEEEeecCC--EEEEEeCCeEEEEEccCCCCCeeeeeccccccc------c-----------c
Q 010287 328 EAPGTRSFFTEIIASISDIKFARNGR--HILSRDYMTLKLWDINMDSGPVATFQVHEHLRP------K-----------L 388 (513)
Q Consensus 328 ~~~~~~~~~~~~~~~v~~i~~sp~~~--~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~------~-----------~ 388 (513)
..|...+.+++|+|++. +++++.++.+.+|++.. ..+...+........ . .
T Consensus 267 ---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 336 (814)
T 3mkq_A 267 ---------NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN-DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGN 336 (814)
T ss_dssp ---------CCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC-CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSC
T ss_pred ---------ecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC-CCceeEECCCCCEEEECcccccceeeeeeecccc
Confidence 23346899999999987 57778888899999875 333222211100000 0 0
Q ss_pred ccccc-----------cCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceee
Q 010287 389 CDLYE-----------NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 457 (513)
Q Consensus 389 ~~~~~-----------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 457 (513)
..... ...-..+.+++|+|+|++|++++ |+.+.+|++..... .+...+..++|+|+++++++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~------~~~~~i~~~~~spdg~~la~ 409 (814)
T 3mkq_A 337 EEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN------KAFGKCQDFVWGPDSNSYAL 409 (814)
T ss_dssp CCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEE------EEEEECSEEEECTTSSCEEE
T ss_pred cccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccc------cCCCceEEEEEeCCCCeEEE
Confidence 00000 00111356899999999999998 89999999764311 23456789999999999999
Q ss_pred ecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCC---CEEE-EEcCCcEEEEe
Q 010287 458 GSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSE---NSIA-CAASNSLYMYY 512 (513)
Q Consensus 458 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~---~~la-~~~~~~~~i~~ 512 (513)
++.++.+++ ++ ...+|...|.+++|+|++ ++|+ .+.++.+.+|.
T Consensus 410 ~~~~g~v~l---~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d 457 (814)
T 3mkq_A 410 IDETGQIKY---YK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFD 457 (814)
T ss_dssp ECTTCCEEE---EE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEEC
T ss_pred EeCCCcEEE---EE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEE
Confidence 999999999 21 122367789999999998 4555 45588888886
No 66
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.1e-35 Score=295.19 Aligned_cols=346 Identities=14% Similarity=0.148 Sum_probs=264.0
Q ss_pred ccccccccc-EEEEEEcC--CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccc
Q 010287 29 GEEVQEVDI-ISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (513)
Q Consensus 29 ~~~~~h~~~-V~~v~~sp--~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (513)
....+|.+. |++++|+| ++++||+|+.||.|+||++.++.... .+.......+.+|.
T Consensus 57 ~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~---------------~~~~~~~~~~~~~~----- 116 (615)
T 1pgu_A 57 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN---------------SVEVNVKSEFQVLA----- 116 (615)
T ss_dssp EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT---------------EEEEEEEEEEECCS-----
T ss_pred eEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccc---------------cccccccchhhccc-----
Confidence 345679999 99999999 99999999999999999986542100 00112345566777
Q ss_pred cccccccccceeEEEeecCCCceEEEeecC----CeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceecc
Q 010287 106 LKSLEIEEKINKIRWCQSANSALYLLSTND----KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA 181 (513)
Q Consensus 106 ~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d----~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (513)
..|.+++|+| ++.+|++++.+ +.|++||. ++.......+ . .....+.|+|
T Consensus 117 -------~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d~--~~~~~~~~~~--~-------------~~v~~~~~~~ 170 (615)
T 1pgu_A 117 -------GPISDISWDF--EGRRLCVVGEGRDNFGVFISWDS--GNSLGEVSGH--S-------------QRINACHLKQ 170 (615)
T ss_dssp -------SCEEEEEECT--TSSEEEEEECCSSCSEEEEETTT--CCEEEECCSC--S-------------SCEEEEEECS
T ss_pred -------ccEEEEEEeC--CCCEEEEeccCCCCccEEEEEEC--CCcceeeecC--C-------------ccEEEEEECC
Confidence 8899999955 78899999887 68999983 3333222211 1 2233678888
Q ss_pred CCC-ccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccC---CeEEEEeccC-CCEEEEE-cCCeE
Q 010287 182 NGG-CGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDY---HINSISNNSD-GETFISA-DDLRI 255 (513)
Q Consensus 182 ~g~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~-~~~l~s~-~d~~i 255 (513)
++. .+ ++++.++.+++|++...+. .. .+.+|.. .|.+++|+|+ +++|+++ .|+.|
T Consensus 171 ~~~~~l------------~~~~~d~~v~vwd~~~~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 231 (615)
T 1pgu_A 171 SRPMRS------------MTVGDDGSVVFYQGPPFKF------SA-SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKI 231 (615)
T ss_dssp SSSCEE------------EEEETTTEEEEEETTTBEE------EE-EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCE
T ss_pred CCCcEE------------EEEeCCCcEEEEeCCCcce------ee-eecccCCCCceEEEEEECCCCCCEEEEEeCCCeE
Confidence 887 44 7778899999999765332 22 2467888 8999999999 9999998 79999
Q ss_pred EEEEcCCCcceeeecccCcccc-c---cccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccc------------
Q 010287 256 NLWNLEISNQSFNIVDVKPANM-E---DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT------------ 319 (513)
Q Consensus 256 ~vwd~~~~~~~~~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~------------ 319 (513)
++||+++++... .+ . .|...|.+++|+ ++ .+|++++.|+.|++||+++++....
T Consensus 232 ~vwd~~~~~~~~--------~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 301 (615)
T 1pgu_A 232 SCFDGKSGEFLK--------YIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 301 (615)
T ss_dssp EEEETTTCCEEE--------ECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCE
T ss_pred EEEECCCCCEeE--------EecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCce
Confidence 999998766543 23 3 789999999999 77 8999999999999999886542110
Q ss_pred -----------------------------cceeecccc------------------------------------------
Q 010287 320 -----------------------------HSKLFEEQE------------------------------------------ 328 (513)
Q Consensus 320 -----------------------------~~~~~~~~~------------------------------------------ 328 (513)
....+..+.
T Consensus 302 ~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~ 381 (615)
T 1pgu_A 302 VGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS 381 (615)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECC
T ss_pred eEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEEC
Confidence 000000000
Q ss_pred -------------------------------------------------------C------------------------
Q 010287 329 -------------------------------------------------------A------------------------ 329 (513)
Q Consensus 329 -------------------------------------------------------~------------------------ 329 (513)
.
T Consensus 382 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 461 (615)
T 1pgu_A 382 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAV 461 (615)
T ss_dssp STTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEE
T ss_pred CCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEE
Confidence 0
Q ss_pred ----CCC----------c--cccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeec-ccccccccccc
Q 010287 330 ----PGT----------R--SFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDL 391 (513)
Q Consensus 330 ----~~~----------~--~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~ 391 (513)
... . ..+.+|...|.+++|+|++++|++++. +.|++||+.+ ++.+..+.+ |...
T Consensus 462 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~h~~~------- 533 (615)
T 1pgu_A 462 GLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSK------- 533 (615)
T ss_dssp EETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEECCSCCCSSC-------
T ss_pred eecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC-CcceeEeecCCCCc-------
Confidence 000 0 223457889999999999999999875 9999999986 777777665 6544
Q ss_pred cccCCccceeeEEEeC----------CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCC
Q 010287 392 YENDSIFDKFECCLSG----------DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 461 (513)
Q Consensus 392 ~~~~~~~~v~~~~~s~----------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 461 (513)
|++++|+| ++++|++++.||.|++||+.++......+.+|..+|.+++|+|+++ |++++.|
T Consensus 534 --------v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d 604 (615)
T 1pgu_A 534 --------INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGAD 604 (615)
T ss_dssp --------EEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETT
T ss_pred --------eeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCC
Confidence 56999999 9999999999999999999987566678899999999999999999 9999999
Q ss_pred CeEEE
Q 010287 462 GVVRR 466 (513)
Q Consensus 462 ~~i~~ 466 (513)
+.|++
T Consensus 605 ~~v~i 609 (615)
T 1pgu_A 605 ACIKR 609 (615)
T ss_dssp SCEEE
T ss_pred ceEEE
Confidence 99999
No 67
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-35 Score=276.80 Aligned_cols=259 Identities=14% Similarity=0.221 Sum_probs=204.5
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
...+|.+.|++++|+|++++||+|+.||.|+||++..... .....+.+|.
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---------------------~~~~~~~~h~--------- 55 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---------------------KLIDTLTGHE--------- 55 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---------------------EEEEEECCCS---------
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc---------------------eeeeEecCCC---------
Confidence 4568999999999999999999999999999999874321 2445677888
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
..|++++|+|..++.+|++++.||.|++||+.+++......
T Consensus 56 ---~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------------------------------------ 96 (379)
T 3jrp_A 56 ---GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV------------------------------------ 96 (379)
T ss_dssp ---SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEE------------------------------------
T ss_pred ---CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeee------------------------------------
Confidence 88999999765447899999999999999998875322211
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC--CCEEEEE-cCCeEEEEEcCCCcce
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 266 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~vwd~~~~~~~ 266 (513)
...|...|.+++|+|+ +++|+++ .|+.|++||++.....
T Consensus 97 --------------------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 138 (379)
T 3jrp_A 97 --------------------------------------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT 138 (379)
T ss_dssp --------------------------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC
T ss_pred --------------------------------------ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce
Confidence 3467788999999999 8999998 7999999999876433
Q ss_pred eeecccCccccccccCCeEEEEEeC-------------CCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCc
Q 010287 267 FNIVDVKPANMEDLTEVITSAEFHP-------------THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 333 (513)
Q Consensus 267 ~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 333 (513)
... .+..|...|.+++|+| ++ .+|++++.||.|++||++++.........
T Consensus 139 ~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------- 201 (379)
T 3jrp_A 139 SPI------IIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLEST---------- 201 (379)
T ss_dssp CEE------EEECCTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEE----------
T ss_pred eeE------EecCCCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEE----------
Confidence 221 4567899999999999 56 89999999999999999876542222222
Q ss_pred cccccccccEEEEEEeec---CCEEEEEeC-CeEEEEEccCCCCCee-e-eec--ccccccccccccccCCccceeeEEE
Q 010287 334 SFFTEIIASISDIKFARN---GRHILSRDY-MTLKLWDINMDSGPVA-T-FQV--HEHLRPKLCDLYENDSIFDKFECCL 405 (513)
Q Consensus 334 ~~~~~~~~~v~~i~~sp~---~~~l~~~~~-~~v~iwd~~~~~~~~~-~-~~~--~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (513)
+.+|...|.+++|+|+ +.+|++++. +.|++||++....... . +.. +.. .+++++|
T Consensus 202 --~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---------------~v~~~~~ 264 (379)
T 3jrp_A 202 --LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD---------------VLWRASW 264 (379)
T ss_dssp --ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS---------------CEEEEEE
T ss_pred --EecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCC---------------cEEEEEE
Confidence 3456688999999999 899999875 9999999986322211 1 111 221 2568999
Q ss_pred eCCCCEEEEEeCCCcEEEEecCCC
Q 010287 406 SGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 406 s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
+|++++|++++.||.|++|++...
T Consensus 265 s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 265 SLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp CSSSCCEEEEESSSSEEEEEEEET
T ss_pred cCCCCEEEEecCCCcEEEEeCCCC
Confidence 999999999999999999999865
No 68
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.4e-34 Score=267.30 Aligned_cols=295 Identities=16% Similarity=0.179 Sum_probs=223.1
Q ss_pred eEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccC
Q 010287 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (513)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (513)
.+..+|+||+ +.|++|+|+|. ++++|++|+.|++|+|||+...+....
T Consensus 29 ~l~~tL~GH~------------~~V~~v~~sp~-~~~~l~S~s~D~~i~vWd~~~~~~~~~------------------- 76 (340)
T 4aow_A 29 TLRGTLKGHN------------GWVTQIATTPQ-FPDMILSASRDKTIIMWKLTRDETNYG------------------- 76 (340)
T ss_dssp EEEEEECCCS------------SCEEEEEECTT-CTTEEEEEETTSCEEEEEECCSSSCSE-------------------
T ss_pred EEEEEECCcc------------CCEEEEEEeCC-CCCEEEEEcCCCeEEEEECCCCCcccc-------------------
Confidence 3556789999 99999999763 246999999999999999986542111
Q ss_pred cccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE
Q 010287 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 250 (513)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 250 (513)
.+. ..+.+|...|.+++|+|++++|+++
T Consensus 77 ---------------------------------------------------~~~-~~l~~h~~~V~~~~~s~dg~~l~s~ 104 (340)
T 4aow_A 77 ---------------------------------------------------IPQ-RALRGHSHFVSDVVISSDGQFALSG 104 (340)
T ss_dssp ---------------------------------------------------EEE-EEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ---------------------------------------------------eee-EEEeCCCCCEEEEEECCCCCEEEEE
Confidence 011 1246899999999999999999998
Q ss_pred -cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccC
Q 010287 251 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 329 (513)
Q Consensus 251 -~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 329 (513)
.|+.|++|+........ ....+...+..+.+++++ ..|++++.|+.+++||+...... ..
T Consensus 105 ~~d~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~---~~------- 165 (340)
T 4aow_A 105 SWDGTLRLWDLTTGTTTR--------RFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKY---TV------- 165 (340)
T ss_dssp ETTSEEEEEETTTTEEEE--------EEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEE---EE-------
T ss_pred cccccceEEeecccceee--------eecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceE---EE-------
Confidence 79999999998655433 234567788899999998 89999999999999998764421 11
Q ss_pred CCCccccccccccEEEEEEeecC--CEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEe
Q 010287 330 PGTRSFFTEIIASISDIKFARNG--RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 406 (513)
Q Consensus 330 ~~~~~~~~~~~~~v~~i~~sp~~--~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 406 (513)
...+|...+..++|++++ .++++++ ++.|++||++. ++.+..+.+|... |++++|+
T Consensus 166 -----~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~~~h~~~---------------v~~~~~s 224 (340)
T 4aow_A 166 -----QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CKLKTNHIGHTGY---------------LNTVTVS 224 (340)
T ss_dssp -----CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-TEEEEEECCCSSC---------------EEEEEEC
T ss_pred -----EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC-CceeeEecCCCCc---------------EEEEEEC
Confidence 134466789999999864 5667766 49999999996 7778888877765 5599999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCC--CC----CccccCCc
Q 010287 407 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA--DN----SALDANGN 480 (513)
Q Consensus 407 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~--~~----~~~~~~~~ 480 (513)
|++++|++|+.||.|++||+.+.. ....+.. ...+..+.++|++.++ +++.|+.|++.+.. .. ........
T Consensus 225 ~~~~~l~s~s~Dg~i~iwd~~~~~-~~~~~~~-~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 301 (340)
T 4aow_A 225 PDGSLCASGGKDGQAMLWDLNEGK-HLYTLDG-GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTS 301 (340)
T ss_dssp TTSSEEEEEETTCEEEEEETTTTE-EEEEEEC-SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-----
T ss_pred CCCCEEEEEeCCCeEEEEEeccCc-eeeeecC-CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeee
Confidence 999999999999999999999773 3344444 4678999999987655 55679999992111 10 00011122
Q ss_pred cccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 481 AFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 481 ~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
...|...|++++|+||+++||+++ ++.++||+
T Consensus 302 ~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 302 SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 335788999999999999999887 67799996
No 69
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.2e-35 Score=279.09 Aligned_cols=291 Identities=14% Similarity=0.194 Sum_probs=228.0
Q ss_pred ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (513)
Q Consensus 34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (513)
|.+.|++++|+|++++||+|+.||.|++|+. +++ ....+.+|. .
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~-----------------------~~~~~~~~~------------~ 150 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGA-----------------------LLNVLNFHR------------A 150 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSC-----------------------EEEEECCCC------------S
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCC-----------------------eeeeccCCC------------c
Confidence 6889999999999999999999999999993 222 234567787 8
Q ss_pred cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (513)
Q Consensus 114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (513)
.|.+++|+| ++.+|++++.|+.|++||+.+++.............
T Consensus 151 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--------------------------------- 195 (425)
T 1r5m_A 151 PIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGS--------------------------------- 195 (425)
T ss_dssp CEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC--------------------------------------
T ss_pred cEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc---------------------------------
Confidence 899999955 778999999999999999998876654433211100
Q ss_pred CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc
Q 010287 194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 272 (513)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~ 272 (513)
.+.. .........+.+++|++++. ++++ .++.|++||++++....
T Consensus 196 ------------~~~~----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~~~~----- 241 (425)
T 1r5m_A 196 ------------SINA----------------ENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKTPTG----- 241 (425)
T ss_dssp --------------------------------------CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSSCSE-----
T ss_pred ------------ceee----------------ccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCceee-----
Confidence 0000 00012223478899999865 5555 89999999998765432
Q ss_pred CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC
Q 010287 273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 352 (513)
Q Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~ 352 (513)
.+..|...|.+++|+|++ .+|++++.|+.|++||+++++. ...+ .+|...|.+++|+|++
T Consensus 242 ---~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~----~~~~------------~~~~~~i~~~~~~~~~ 301 (425)
T 1r5m_A 242 ---KLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNS----QNCF------------YGHSQSIVSASWVGDD 301 (425)
T ss_dssp ---EECCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSC----SEEE------------CCCSSCEEEEEEETTT
T ss_pred ---eeccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCcc----ceEe------------cCCCccEEEEEECCCC
Confidence 346789999999999998 8999999999999999988654 2222 3455789999999999
Q ss_pred CEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC-
Q 010287 353 RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS- 430 (513)
Q Consensus 353 ~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~- 430 (513)
++++++. +.|++||++. ++.+..+..|... +.+++|+|++++|++++.||.|++||+.++.
T Consensus 302 -~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~ 364 (425)
T 1r5m_A 302 -KVISCSMDGSVRLWSLKQ-NTLLALSIVDGVP---------------IFAGRISQDGQKYAVAFMDGQVNVYDLKKLNS 364 (425)
T ss_dssp -EEEEEETTSEEEEEETTT-TEEEEEEECTTCC---------------EEEEEECTTSSEEEEEETTSCEEEEECHHHHC
T ss_pred -EEEEEeCCCcEEEEECCC-CcEeEecccCCcc---------------EEEEEEcCCCCEEEEEECCCeEEEEECCCCcc
Confidence 7777765 9999999986 7777777766654 4589999999999999999999999998763
Q ss_pred ------------------ccceeecCCCC--ceeEEEEcCCCCceeeecCCCeEEE
Q 010287 431 ------------------AESTTLEASKN--PMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 431 ------------------~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.....+..|.. ++..+.|+|++++|++++.||.|++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 420 (425)
T 1r5m_A 365 KSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSV 420 (425)
T ss_dssp --------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEE
T ss_pred ceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEE
Confidence 04577888866 9999999999999999999999998
No 70
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=7.5e-34 Score=271.49 Aligned_cols=277 Identities=12% Similarity=0.205 Sum_probs=223.2
Q ss_pred cEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccce
Q 010287 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (513)
Q Consensus 37 ~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~ 116 (513)
.+++|+||++ ++||+|. |++|+|||..+++.. ....+.+|. ..|+
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~---------------------~~~~~~~~~------------~~V~ 151 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL---------------------QLLQMEQPG------------EYIS 151 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE---------------------EEEECCSTT------------CCEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE---------------------EEEEecCCC------------CcEE
Confidence 4678999976 5888886 899999998877642 112345666 7899
Q ss_pred eEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCC
Q 010287 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (513)
Q Consensus 117 ~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 196 (513)
+|+|+| ++.+|++|+.||+|++||+++++....
T Consensus 152 sv~fsp--dg~~lasgs~Dg~v~iWd~~~~~~~~~--------------------------------------------- 184 (420)
T 4gga_A 152 SVAWIK--EGNYLAVGTSSAEVQLWDVQQQKRLRN--------------------------------------------- 184 (420)
T ss_dssp EEEECT--TSSEEEEEETTSCEEEEETTTTEEEEE---------------------------------------------
T ss_pred EEEECC--CCCEEEEEECCCeEEEEEcCCCcEEEE---------------------------------------------
Confidence 999955 888999999999999999998865432
Q ss_pred CCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCcc
Q 010287 197 SSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 275 (513)
Q Consensus 197 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~ 275 (513)
..+|...+.+++++ +..|++| .|+.+++||.........
T Consensus 185 -------------------------------~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~------- 224 (420)
T 4gga_A 185 -------------------------------MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVA------- 224 (420)
T ss_dssp -------------------------------ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEE-------
T ss_pred -------------------------------EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeE-------
Confidence 34677778887765 6788888 799999999986655443
Q ss_pred ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC-CE
Q 010287 276 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RH 354 (513)
Q Consensus 276 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~ 354 (513)
.+.+|...+..+.++|++ .++++++.|+.+++||..+++........ ...|...|.+++|+|++ .+
T Consensus 225 ~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~------------~~~~~~~V~~~~~~p~~~~~ 291 (420)
T 4gga_A 225 TLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQT------------FTQHQGAVKAVAWCPWQSNV 291 (420)
T ss_dssp EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEE------------ECCCSSCEEEEEECTTCTTE
T ss_pred EecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeee------------ecccCCceeeeeeCCCcccE
Confidence 567899999999999999 99999999999999999887643322222 34455789999999965 45
Q ss_pred EEEE--e-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe--CCCcEEEEecCCC
Q 010287 355 ILSR--D-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS--YSNLFRVFGCSEG 429 (513)
Q Consensus 355 l~~~--~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~vwd~~~~ 429 (513)
++++ + |+.|++||+.+ +.....+..+.. +.++.|+|+++.+++++ .|+.|+|||+.++
T Consensus 292 la~~~gs~D~~I~iwd~~t-~~~~~~~~~~~~----------------v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~ 354 (420)
T 4gga_A 292 LATGGGTSDRHIRIWNVCS-GACLSAVDAHSQ----------------VCSILWSPHYKELISGHGFAQNQLVIWKYPTM 354 (420)
T ss_dssp EEEEECTTTCEEEEEETTT-TEEEEEEECSSC----------------EEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred EEEEeecCCCEEEEEeCCc-cccceeeccccc----------------eeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence 5553 3 49999999996 777777665543 34889999999988765 7899999999987
Q ss_pred CccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 430 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 430 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
..+.++.+|..+|.+++|+|++++|++|+.|+.|++
T Consensus 355 -~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvri 390 (420)
T 4gga_A 355 -AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 390 (420)
T ss_dssp -CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred -cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence 455889999999999999999999999999999999
No 71
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.4e-34 Score=269.10 Aligned_cols=287 Identities=10% Similarity=0.042 Sum_probs=226.3
Q ss_pred cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccc
Q 010287 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (513)
Q Consensus 33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (513)
+|.+.|++++|+|++++|++|+.||.|+||++.+.... .....+.+|.
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~--------------------~~~~~~~~~~------------ 56 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN--------------------VDLLQSLRYK------------ 56 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE--------------------EEEEEEEECS------------
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc--------------------ccceeeeecC------------
Confidence 79999999999999999999999999999999866510 0112334676
Q ss_pred ccceeEEEeecCCCc-eEEEeecCCeEEEEEc-cCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 113 EKINKIRWCQSANSA-LYLLSTNDKTIKLWKV-QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~-~l~s~s~d~~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
..|.+++|+| ++. +|++++.||.|++||+ .+++...
T Consensus 57 ~~v~~~~~~~--~~~~~l~~~~~dg~i~~wd~~~~~~~~~---------------------------------------- 94 (342)
T 1yfq_A 57 HPLLCCNFID--NTDLQIYVGTVQGEILKVDLIGSPSFQA---------------------------------------- 94 (342)
T ss_dssp SCEEEEEEEE--SSSEEEEEEETTSCEEEECSSSSSSEEE----------------------------------------
T ss_pred CceEEEEECC--CCCcEEEEEcCCCeEEEEEeccCCceEe----------------------------------------
Confidence 8899999977 688 8999999999999999 7764311
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeecc--ccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCC-----
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHA--HDYHINSISNNSDGETFISA-DDLRINLWNLEI----- 262 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~----- 262 (513)
+.+ |...|.+++|+| ++.|+++ .|+.|++||+++
T Consensus 95 -------------------------------------~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~ 136 (342)
T 1yfq_A 95 -------------------------------------LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGV 136 (342)
T ss_dssp -------------------------------------CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBC
T ss_pred -------------------------------------ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccc
Confidence 235 778899999999 9999998 799999999985
Q ss_pred ----CcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC-cccccccceeeccccCCCCccccc
Q 010287 263 ----SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFT 337 (513)
Q Consensus 263 ----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 337 (513)
.+... .+. |...|.+++|+|++ +++++.|+.|++||+++ +.... ... ..
T Consensus 137 ~~~~~~~~~--------~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~---~~~-----------~~ 190 (342)
T 1yfq_A 137 IAVKNLNSN--------NTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNG---TIE-----------ES 190 (342)
T ss_dssp EEEEESCSS--------SSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCC---EEE-----------EC
T ss_pred ccccCCeee--------EEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccc---eee-----------ec
Confidence 33221 233 78899999999874 89999999999999987 44211 101 12
Q ss_pred cccccEEEEEEee-cCCEEEEEeC-CeEEEEEccCC-----CCCeeeeecccccccccccccccCCccceeeEEEeCCCC
Q 010287 338 EIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMD-----SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 410 (513)
Q Consensus 338 ~~~~~v~~i~~sp-~~~~l~~~~~-~~v~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 410 (513)
.|...+.+++|+| +++++++++. |.|++|+++.. .+....+..|...... ......|.+++|+|+++
T Consensus 191 ~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~s~~~~ 264 (342)
T 1yfq_A 191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD------TNLAYPVNSIEFSPRHK 264 (342)
T ss_dssp SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTC------CSSCCCEEEEEECTTTC
T ss_pred CCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccc------cccceeEEEEEEcCCCC
Confidence 3446899999999 9999999876 99999999873 2677777776541100 00111256999999999
Q ss_pred EEEEEeCCCcEEEEecCCCCccceeecCC-CCceeEEEEcCCCCceeeecCCCe-EEE
Q 010287 411 RVATGSYSNLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSRPLGSLSGV-VRR 466 (513)
Q Consensus 411 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~-i~~ 466 (513)
+|++++.||.|++||+.++ .....+..| ..+|.+++ |++++|++++.||. .+.
T Consensus 265 ~l~~~~~dg~i~vwd~~~~-~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~ 319 (342)
T 1yfq_A 265 FLYTAGSDGIISCWNLQTR-KKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTN 319 (342)
T ss_dssp CEEEEETTSCEEEEETTTT-EEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHC
T ss_pred EEEEecCCceEEEEcCccH-hHhhhhhcccCCCceEec--CCCCeEEEEecCCccccc
Confidence 9999999999999999987 445778888 99999999 99999999999998 443
No 72
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-34 Score=266.69 Aligned_cols=294 Identities=15% Similarity=0.173 Sum_probs=230.1
Q ss_pred ccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCccc
Q 010287 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (513)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (513)
..+.+|. +.|++++|+| ++.+|++++.||.|++||+.+++....
T Consensus 26 ~~l~~h~------------~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~---------------------- 69 (369)
T 3zwl_B 26 IKLTGHE------------RPLTQVKYNK--EGDLLFSCSKDSSASVWYSLNGERLGT---------------------- 69 (369)
T ss_dssp EEEECCS------------SCEEEEEECT--TSCEEEEEESSSCEEEEETTTCCEEEE----------------------
T ss_pred EEEEEee------------ceEEEEEEcC--CCCEEEEEeCCCEEEEEeCCCchhhhh----------------------
Confidence 4467777 8999999965 788999999999999999988754332
Q ss_pred ccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cC
Q 010287 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD 252 (513)
Q Consensus 174 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d 252 (513)
+.+|...|.+++|+|++++|+++ .|
T Consensus 70 ------------------------------------------------------~~~h~~~v~~~~~~~~~~~l~s~~~d 95 (369)
T 3zwl_B 70 ------------------------------------------------------LDGHTGTIWSIDVDCFTKYCVTGSAD 95 (369)
T ss_dssp ------------------------------------------------------ECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ------------------------------------------------------hhhcCCcEEEEEEcCCCCEEEEEeCC
Confidence 34677889999999999999998 79
Q ss_pred CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC-----CcEEEEEcCCcccccccceeeccc
Q 010287 253 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDMRQSALCDTHSKLFEEQ 327 (513)
Q Consensus 253 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~ 327 (513)
+.|++||+.+++.... +. +...+.+++|+|++ .++++++.+ +.|++||++....... +...
T Consensus 96 g~i~iwd~~~~~~~~~--------~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~----~~~~ 161 (369)
T 3zwl_B 96 YSIKLWDVSNGQCVAT--------WK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHE----LTKV 161 (369)
T ss_dssp TEEEEEETTTCCEEEE--------EE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCC----EEEE
T ss_pred CeEEEEECCCCcEEEE--------ee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCcccee----eccc
Confidence 9999999997665432 22 77889999999999 899999998 9999999987654221 1111
Q ss_pred cCCCCccccccccc--cEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEE
Q 010287 328 EAPGTRSFFTEIIA--SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 404 (513)
Q Consensus 328 ~~~~~~~~~~~~~~--~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (513)
. ......+..|.. .+.+++|+|++++|++++. +.|++||++.....+..+..|... |.+++
T Consensus 162 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------------v~~~~ 225 (369)
T 3zwl_B 162 S-EEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS---------------ISDMQ 225 (369)
T ss_dssp C-SSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSC---------------EEEEE
T ss_pred c-cceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCc---------------eeEEE
Confidence 0 011111333444 8999999999999999875 999999998645667777776654 55899
Q ss_pred EeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCC--------------eEEEecCC
Q 010287 405 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG--------------VVRRVKGA 470 (513)
Q Consensus 405 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------------~i~~~~~~ 470 (513)
|+|++++|++++.|+.|++||+.++. ....+. +..++..+.++|+++++++++.++ .+++ +
T Consensus 226 ~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~---~ 300 (369)
T 3zwl_B 226 FSPDLTYFITSSRDTNSFLVDVSTLQ-VLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARF---Y 300 (369)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCC-EEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEE---E
T ss_pred ECCCCCEEEEecCCceEEEEECCCCc-eeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEE---E
Confidence 99999999999999999999999873 334444 778899999999999999999888 5555 2
Q ss_pred CCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 471 DNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 471 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
+............|...|++++|+|++++|++++ ++.+++|.
T Consensus 301 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 301 HKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHH 343 (369)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 2221122233446889999999999999999887 66788885
No 73
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.2e-35 Score=280.19 Aligned_cols=281 Identities=14% Similarity=0.198 Sum_probs=201.5
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
..|++|+|+|.. +.+|++|+.||+|+|||+.+++......
T Consensus 120 ~~V~~l~~~P~~-~~~lasGs~dg~i~lWd~~~~~~~~~~~--------------------------------------- 159 (435)
T 4e54_B 120 RRATSLAWHPTH-PSTVAVGSKGGDIMLWNFGIKDKPTFIK--------------------------------------- 159 (435)
T ss_dssp SCEEEEEECSSC-TTCEEEEETTSCEEEECSSCCSCCEEEC---------------------------------------
T ss_pred CCEEEEEEeCCC-CCEEEEEeCCCEEEEEECCCCCceeEEE---------------------------------------
Confidence 789999998743 4689999999999999998764322211
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEEEEE-cCCeEEEEEcCCCcceeeec
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIV 270 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~~~~~~~ 270 (513)
..+|...|.+++|+| ++++|++| .|++|++||+++.... .+.
T Consensus 160 -----------------------------------~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~-~~~ 203 (435)
T 4e54_B 160 -----------------------------------GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR-VFA 203 (435)
T ss_dssp -----------------------------------CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE-EEE
T ss_pred -----------------------------------ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee-EEe
Confidence 357889999999998 68899998 7999999999854322 111
Q ss_pred ccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee
Q 010287 271 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 350 (513)
Q Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp 350 (513)
....+...+.+++|+|++ .+|++|+.||.|++||++... +.. +.+|...|.+++|+|
T Consensus 204 -----~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~-----~~~------------~~~h~~~v~~v~~~p 260 (435)
T 4e54_B 204 -----SSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKE-----LWN------------LRMHKKKVTHVALNP 260 (435)
T ss_dssp -----CCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCB-----CCC------------SBCCSSCEEEEEECT
T ss_pred -----ccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcce-----eEE------------EecccceEEeeeecC
Confidence 223345567899999998 999999999999999986533 222 355668999999999
Q ss_pred cCC-EEEEEe-CCeEEEEEccCCCCCeeee---ecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEe
Q 010287 351 NGR-HILSRD-YMTLKLWDINMDSGPVATF---QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 425 (513)
Q Consensus 351 ~~~-~l~~~~-~~~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 425 (513)
++. ++++++ |+.|++||++. .+....+ .+|... |++++|+|++++|++++.||.|++||
T Consensus 261 ~~~~~~~s~s~d~~v~iwd~~~-~~~~~~~~~~~~h~~~---------------v~~~~~spdg~~l~s~~~D~~i~iwd 324 (435)
T 4e54_B 261 CCDWFLATASVDQTVKIWDLRQ-VRGKASFLYSLPHRHP---------------VNAACFSPDGARLLTTDQKSEIRVYS 324 (435)
T ss_dssp TCSSEEEEEETTSBCCEEETTT-CCSSSCCSBCCBCSSC---------------EEECCBCTTSSEEEEEESSSCEEEEE
T ss_pred CCceEEEEecCcceeeEEeccc-ccccceEEEeeecccc---------------ccceeECCCCCeeEEEcCCCEEEEEE
Confidence 876 566776 59999999986 4333222 334433 56899999999999999999999999
Q ss_pred cCCCCccceeecCCCC------ceeEEEEcCCCCceeeec------------CCCeEEEecCCCCCccccCCcc-ccccC
Q 010287 426 CSEGSAESTTLEASKN------PMRRQVQTPSRPSRPLGS------------LSGVVRRVKGADNSALDANGNA-FDFSM 486 (513)
Q Consensus 426 ~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~------------~d~~i~~~~~~~~~~~~~~~~~-~~~~~ 486 (513)
+.++... ..+..|.. ......++|++..+++++ .++.|++ |+.......... ..|..
T Consensus 325 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~i---wd~~~g~~~~~l~~~~~~ 400 (435)
T 4e54_B 325 ASQWDCP-LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDV---FDGNSGKMMCQLYDPESS 400 (435)
T ss_dssp SSSSSSE-EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEE---ECSSSCCEEEEECCSSCC
T ss_pred CCCCccc-eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEE---EECCCCcEEEEEeCCCCC
Confidence 9987433 33333221 122345555555444432 3456777 222211111121 24677
Q ss_pred CeeEE-EEeCCCCEEEEEcCCcEEEEe
Q 010287 487 KLLHL-AWHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 487 ~i~~~-~~sp~~~~la~~~~~~~~i~~ 512 (513)
.|.++ +|||++++||+|+++.++||+
T Consensus 401 ~v~s~~~fspdg~~lasg~d~~i~iW~ 427 (435)
T 4e54_B 401 GISSLNEFNPMGDTLASAMGYHILIWS 427 (435)
T ss_dssp CCCCEEEECTTSSCEEEECSSEEEECC
T ss_pred cEEEEEEECCCCCEEEEEcCCcEEEEE
Confidence 88887 699999999999999999997
No 74
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.9e-34 Score=268.27 Aligned_cols=290 Identities=12% Similarity=0.145 Sum_probs=217.4
Q ss_pred ceEeccccCCCCcccccccccccccceeEEEeecCCC-ceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcc
Q 010287 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS-ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (513)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~-~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (513)
+.....+.+|. ..|++++|+| ++ .+|++++.|+.|++||+.+++......
T Consensus 63 ~~~~~~~~~h~------------~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------- 113 (383)
T 3ei3_B 63 YKLHRTASPFD------------RRVTSLEWHP--THPTTVAVGSKGGDIILWDYDVQNKTSFIQ--------------- 113 (383)
T ss_dssp CEEEEEECCCS------------SCEEEEEECS--SCTTEEEEEEBTSCEEEEETTSTTCEEEEC---------------
T ss_pred cceEEeccCCC------------CCEEEEEECC--CCCCEEEEEcCCCeEEEEeCCCcccceeee---------------
Confidence 34555677787 8899999966 55 799999999999999998765433211
Q ss_pred cCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEE
Q 010287 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETF 247 (513)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l 247 (513)
..+|...|.+++|+| ++++|
T Consensus 114 -----------------------------------------------------------~~~h~~~v~~~~~~~~~~~~l 134 (383)
T 3ei3_B 114 -----------------------------------------------------------GMGPGDAITGMKFNQFNTNQL 134 (383)
T ss_dssp -----------------------------------------------------------CCSTTCBEEEEEEETTEEEEE
T ss_pred -----------------------------------------------------------cCCcCCceeEEEeCCCCCCEE
Confidence 136788899999999 67899
Q ss_pred EEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecc
Q 010287 248 ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 326 (513)
Q Consensus 248 ~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 326 (513)
+++ .|+.|++||++. .....+. ....|...|.+++|+|++ .+|++++.|+.|++||++ +.. +..
T Consensus 135 ~s~~~d~~i~iwd~~~-~~~~~~~-----~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~-~~~----~~~--- 199 (383)
T 3ei3_B 135 FVSSIRGATTLRDFSG-SVIQVFA-----KTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLD-GHE----IFK--- 199 (383)
T ss_dssp EEEETTTEEEEEETTS-CEEEEEE-----CCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETT-SCE----EEE---
T ss_pred EEEeCCCEEEEEECCC-CceEEEe-----ccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECC-CCE----EEE---
Confidence 988 799999999984 3222211 223456889999999999 899999999999999984 332 223
Q ss_pred ccCCCCccccccccccEEEEEEeecCC-EEEEEeC-CeEEEEEccCC---CCCeeeeecccccccccccccccCCcccee
Q 010287 327 QEAPGTRSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMD---SGPVATFQVHEHLRPKLCDLYENDSIFDKF 401 (513)
Q Consensus 327 ~~~~~~~~~~~~~~~~v~~i~~sp~~~-~l~~~~~-~~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (513)
+.+|...|.+++|+|+++ +|++++. +.|++||++.. ...+..+ .|... |+
T Consensus 200 ---------~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~---------------v~ 254 (383)
T 3ei3_B 200 ---------EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKP---------------VN 254 (383)
T ss_dssp ---------EECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSC---------------EE
T ss_pred ---------eccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCc---------------eE
Confidence 344668899999999998 8888775 99999999852 2233333 34433 56
Q ss_pred eEEEeC-CCCEEEEEeCCCcEEEEecCCCCccceeecCCC-----------------CceeEEEEcCCCCceeeecCCCe
Q 010287 402 ECCLSG-DGGRVATGSYSNLFRVFGCSEGSAESTTLEASK-----------------NPMRRQVQTPSRPSRPLGSLSGV 463 (513)
Q Consensus 402 ~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~d~~ 463 (513)
+++|+| ++++|++++.|+.|++||+.++... ..+..|. ..+..+.++|++++ +++.|+.
T Consensus 255 ~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~ 331 (383)
T 3ei3_B 255 AAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP-DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRT 331 (383)
T ss_dssp EEEECTTTSCEEEEEESSSEEEEEETTBTTSC-SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCC
T ss_pred EEEEcCCCCCEEEEEcCCCcEEEEECCCCccc-cccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCe
Confidence 999999 9999999999999999999987443 3333322 23444777888887 8889999
Q ss_pred EEEecCCCCCccccCCcccc--ccCCeeEEEEeCCCCEEEEEcCCcEEEEeC
Q 010287 464 VRRVKGADNSALDANGNAFD--FSMKLLHLAWHPSENSIACAASNSLYMYYA 513 (513)
Q Consensus 464 i~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~sp~~~~la~~~~~~~~i~~~ 513 (513)
|++ |+....+....... |...+..++|+|++++||+++++.+++|..
T Consensus 332 i~i---wd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~ 380 (383)
T 3ei3_B 332 IDI---YDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNR 380 (383)
T ss_dssp EEE---EETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEEC
T ss_pred EEE---EecCCCceeeeecCCCCCceEEEEEEecCccEEEEecCCcEEEEec
Confidence 999 33321122222222 567788889999999999999999999973
No 75
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.7e-34 Score=272.92 Aligned_cols=305 Identities=10% Similarity=0.106 Sum_probs=227.3
Q ss_pred EeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCc
Q 010287 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (513)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (513)
....+.+|. +.|++++|+| .+|++++.||.|++|++.+++.....
T Consensus 8 ~~~~~~~h~------------~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~------------------- 52 (397)
T 1sq9_A 8 TANAGKAHD------------ADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPK------------------- 52 (397)
T ss_dssp EEEESSCSS------------SCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGG-------------------
T ss_pred hhhhhhhhh------------cCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCC-------------------
Confidence 445678898 8999999965 59999999999999999876411100
Q ss_pred ccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC----C---
Q 010287 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD----G--- 244 (513)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~--- 244 (513)
... ..+.+|...|.+++|+|+ +
T Consensus 53 --------------------------------------------------~~~-~~~~~h~~~v~~~~~~~~~~~~g~~~ 81 (397)
T 1sq9_A 53 --------------------------------------------------DKS-YSHFVHKSGLHHVDVLQAIERDAFEL 81 (397)
T ss_dssp --------------------------------------------------GGE-EEEECCTTCEEEEEEEEEEETTTEEE
T ss_pred --------------------------------------------------Ccc-eEEecCCCcEEEEEEecccccCCccc
Confidence 000 113578889999999999 9
Q ss_pred CEEEEE-cCCeEEEEEcCCCcceeeecccCccccccc-----cCCeEEEEEe----CCCCeE-EEEEeCCCcEEEEEcCC
Q 010287 245 ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL-----TEVITSAEFH----PTHCNM-LAYSSSKGSIRLIDMRQ 313 (513)
Q Consensus 245 ~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~----~~~~~~-l~~~~~dg~i~vwd~~~ 313 (513)
++|+++ .|+.|++||+.++....... ...+..| ...|.+++|+ |++ .. |++++.||.|++||+++
T Consensus 82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITREDETKKVI---FEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEE---EEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEES
T ss_pred cEEEEEcCCCCEEEEEccCCccccccc---ceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCc
Confidence 999998 79999999998766410000 0134556 5899999999 998 78 99999999999999987
Q ss_pred ------ccccc-ccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeec---c-
Q 010287 314 ------SALCD-THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV---H- 381 (513)
Q Consensus 314 ------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~---~- 381 (513)
+.... .....+... ......|...|.+++|+|++ ++++++. +.|++||++. ++++..+.. |
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~h~ 230 (397)
T 1sq9_A 158 FADESNSLTLNWSPTLELQGT-----VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-LRPLYNFESQHSMI 230 (397)
T ss_dssp SSSHHHHTTTCCCCEEEEEEE-----ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-TEEEEEEECCC---
T ss_pred cccccccceeeccCcceeeee-----eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC-CceeEEEecccccc
Confidence 44321 000022110 00012356789999999999 8888875 9999999996 777777776 5
Q ss_pred --cccccccccccccCCccceeeEEEeCCCCEEEEEeCC---CcEEEEecCCCCccceeecC-------------CCCce
Q 010287 382 --EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEA-------------SKNPM 443 (513)
Q Consensus 382 --~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~-------------~~~~v 443 (513)
... +.+++|+|++++|++++.| |.|++||+.++ .....+.. |..++
T Consensus 231 ~~~~~---------------i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v 294 (397)
T 1sq9_A 231 NNSNS---------------IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWV 294 (397)
T ss_dssp CCCCC---------------EEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSCE
T ss_pred ccCCc---------------cceEEECCCCCEEEEEecCCCCceEEEEECCCC-cccceeccCcccccccccccccCCcE
Confidence 433 5599999999999999999 99999999987 44567777 99999
Q ss_pred eEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccc------cc---------------cCCeeEEEEeCCC-----
Q 010287 444 RRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAF------DF---------------SMKLLHLAWHPSE----- 497 (513)
Q Consensus 444 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~------~~---------------~~~i~~~~~sp~~----- 497 (513)
.++.|+|++++|++++.|+.|++ |+....+...... .| ...|++++|+|++
T Consensus 295 ~~~~~~~~~~~l~~~~~dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~ 371 (397)
T 1sq9_A 295 MSLSFNDSGETLCSAGWDGKLRF---WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM 371 (397)
T ss_dssp EEEEECSSSSEEEEEETTSEEEE---EETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBST
T ss_pred EEEEECCCCCEEEEEeCCCeEEE---EEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccc
Confidence 99999999999999999999999 3222111212222 35 8999999999998
Q ss_pred -----CEEEEEc-CCcEEEEe
Q 010287 498 -----NSIACAA-SNSLYMYY 512 (513)
Q Consensus 498 -----~~la~~~-~~~~~i~~ 512 (513)
++|++++ ++.+.+|.
T Consensus 372 ~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 372 GADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp TCTTSCEEEEEETTTEEEEEE
T ss_pred cccccceEEEecCCCcEEEEE
Confidence 7888777 77888886
No 76
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.7e-34 Score=292.36 Aligned_cols=284 Identities=17% Similarity=0.227 Sum_probs=216.2
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
+.|++++|+|. ++.+|++++.|++|++|++.......
T Consensus 383 ~~V~~v~~~~~-~~~~l~s~s~D~~i~~W~~~~~~~~~------------------------------------------ 419 (694)
T 3dm0_A 383 DMVTAIATPID-NADIIVSASRDKSIILWKLTKDDKAY------------------------------------------ 419 (694)
T ss_dssp SCEEEEECCTT-CCSEEEEEETTSEEEEEECCCSTTCS------------------------------------------
T ss_pred ceeEEEEecCC-CCCEEEEEeCCCcEEEEEccCCCccc------------------------------------------
Confidence 99999999753 34689999999999999987542110
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
......+.+|...|.+++|+|++++|++| .|++|++||+.++....
T Consensus 420 -----------------------------~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~---- 466 (694)
T 3dm0_A 420 -----------------------------GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR---- 466 (694)
T ss_dssp -----------------------------CEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----
T ss_pred -----------------------------ccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCccee----
Confidence 00011246899999999999999999998 69999999998765432
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 351 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 351 (513)
.+.+|...|.+++|+|++ .+|++++.|+.|++||...... ..+.. ...+|...|.+++|+|+
T Consensus 467 ----~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~-----~~~~~--------~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 467 ----RFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECK-----YTISE--------GGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp ----EEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEE-----EEECS--------STTSCSSCEEEEEECSC
T ss_pred ----EEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcc-----eeecc--------CCCCCCCcEEEEEEeCC
Confidence 457899999999999998 8999999999999999764321 11110 02457788999999998
Q ss_pred C--CEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287 352 G--RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 428 (513)
Q Consensus 352 ~--~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 428 (513)
+ ..+++++. +.|++||++. .+....+.+|... |++++|+|++++|++|+.||.|++||+.+
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~-~~~~~~~~~h~~~---------------v~~v~~spdg~~l~sg~~Dg~i~iwd~~~ 592 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSN-CKLRSTLAGHTGY---------------VSTVAVSPDGSLCASGGKDGVVLLWDLAE 592 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred CCcceEEEEeCCCeEEEEECCC-CcEEEEEcCCCCC---------------EEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 6 57888775 9999999996 7788888888765 55999999999999999999999999998
Q ss_pred CCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCcccc----CCc---------------cccccCCee
Q 010287 429 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDA----NGN---------------AFDFSMKLL 489 (513)
Q Consensus 429 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~----~~~---------------~~~~~~~i~ 489 (513)
+.. ...+. +...+.+++|+|++.+|++++ ++.|++ |+...... ... ...+.-.++
T Consensus 593 ~~~-~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (694)
T 3dm0_A 593 GKK-LYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKI---WDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCT 666 (694)
T ss_dssp TEE-EECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEE---EETTTTEEEEEECCCCC----------------CCCCEE
T ss_pred Cce-EEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEE---EECCCCCChhhhccccccccccccccccccCCceeEEee
Confidence 743 34444 346799999999998888775 556888 22211000 000 001112478
Q ss_pred EEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 490 HLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 490 ~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
+++||||+++|++++ ++.++||.
T Consensus 667 ~l~~spdg~~l~sgs~Dg~i~iW~ 690 (694)
T 3dm0_A 667 SLNWSADGSTLFSGYTDGVIRVWG 690 (694)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEE
T ss_pred eEEEcCCCCEEEEEcCCCeEEEEe
Confidence 999999999999887 66788886
No 77
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.4e-33 Score=265.61 Aligned_cols=288 Identities=10% Similarity=0.132 Sum_probs=222.3
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
++|++++|+| ++.+|++++.|+.|++||+.+++.....
T Consensus 9 ~~i~~~~~s~--~~~~l~~~~~d~~v~i~~~~~~~~~~~~---------------------------------------- 46 (372)
T 1k8k_C 9 EPISCHAWNK--DRTQIAICPNNHEVHIYEKSGNKWVQVH---------------------------------------- 46 (372)
T ss_dssp SCCCEEEECT--TSSEEEEECSSSEEEEEEEETTEEEEEE----------------------------------------
T ss_pred CCeEEEEECC--CCCEEEEEeCCCEEEEEeCCCCcEEeee----------------------------------------
Confidence 8899999955 7889999999999999999887522211
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
.+.+|...|.+++|+|++++|+++ .|+.|++||+++++.....
T Consensus 47 ----------------------------------~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-- 90 (372)
T 1k8k_C 47 ----------------------------------ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL-- 90 (372)
T ss_dssp ----------------------------------EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE--
T ss_pred ----------------------------------eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeE--
Confidence 135778889999999999999998 7999999999866532221
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 351 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 351 (513)
.+..|...|.+++|+|++ .+|++++.|+.|++||++.+..... ... ....|...|.+++|+|+
T Consensus 91 ----~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~-~~~-----------~~~~~~~~i~~~~~~~~ 153 (372)
T 1k8k_C 91 ----VILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWV-CKH-----------IKKPIRSTVLSLDWHPN 153 (372)
T ss_dssp ----ECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEE-EEE-----------ECTTCCSCEEEEEECTT
T ss_pred ----EeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCccee-eee-----------eecccCCCeeEEEEcCC
Confidence 346688999999999998 9999999999999999987653110 111 12345678999999999
Q ss_pred CCEEEEEeC-CeEEEEEccC-----------------CCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEE
Q 010287 352 GRHILSRDY-MTLKLWDINM-----------------DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA 413 (513)
Q Consensus 352 ~~~l~~~~~-~~v~iwd~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 413 (513)
+++|++++. +.|++||++. .++.+..+..|... +.+++|+|++++|+
T Consensus 154 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 154 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW---------------VHGVCFSANGSRVA 218 (372)
T ss_dssp SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC---------------EEEEEECSSSSEEE
T ss_pred CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe---------------EEEEEECCCCCEEE
Confidence 999999875 9999999642 14445555544443 56999999999999
Q ss_pred EEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCC--C-------------------
Q 010287 414 TGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD--N------------------- 472 (513)
Q Consensus 414 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~--~------------------- 472 (513)
+++.|+.|++||+.++ .....+..|..++..++|+|+++++++| .|+.|++.+... .
T Consensus 219 ~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (372)
T 1k8k_C 219 WVSHDSTVCLADADKK-MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL 296 (372)
T ss_dssp EEETTTEEEEEEGGGT-TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------
T ss_pred EEeCCCEEEEEECCCC-ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhc
Confidence 9999999999999987 4557888999999999999999999988 899998821111 0
Q ss_pred ----------CccccC------Ccc-ccccCCeeEEEEe-CCC---CEEEEEc-CCcEEEEe
Q 010287 473 ----------SALDAN------GNA-FDFSMKLLHLAWH-PSE---NSIACAA-SNSLYMYY 512 (513)
Q Consensus 473 ----------~~~~~~------~~~-~~~~~~i~~~~~s-p~~---~~la~~~-~~~~~i~~ 512 (513)
...... ... ..|...|++++|+ +++ ++|++++ ++.+++|+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 297 TARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred chhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 000000 122 3799999999977 666 8999888 67788885
No 78
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-33 Score=259.05 Aligned_cols=276 Identities=16% Similarity=0.173 Sum_probs=222.4
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
...+|.+.|++++| |++.+||+|+.||.|++||+.+... ...+..|.
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~-----------------------~~~~~~~~--------- 59 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWL-----------------------GTVVYTGQ--------- 59 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEE-----------------------EEEEEECS---------
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEE-----------------------EEEeecCC---------
Confidence 45689999999999 9999999999999999999865542 24456676
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
..|.+++|+| ++.++++++.|+.|++|++........
T Consensus 60 ---~~v~~~~~~~--~~~~l~~~~~dg~i~~~~~~~~~~~~~-------------------------------------- 96 (313)
T 3odt_A 60 ---GFLNSVCYDS--EKELLLFGGKDTMINGVPLFATSGEDP-------------------------------------- 96 (313)
T ss_dssp ---SCEEEEEEET--TTTEEEEEETTSCEEEEETTCCTTSCC--------------------------------------
T ss_pred ---ccEEEEEECC--CCCEEEEecCCCeEEEEEeeecCCCCc--------------------------------------
Confidence 8899999966 778999999999999999876421000
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~ 268 (513)
.. .+.+|...|.+++| +++.++++ .|+.|++||. .....
T Consensus 97 ----------------------------------~~-~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~--~~~~~- 136 (313)
T 3odt_A 97 ----------------------------------LY-TLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE--GSLVY- 136 (313)
T ss_dssp -----------------------------------C-EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET--TEEEE-
T ss_pred ----------------------------------cc-chhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC--CcEEE-
Confidence 00 13578888999999 56788888 7999999992 23222
Q ss_pred ecccCccccccccCCeEEEEEeC-CCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 347 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 347 (513)
.+..|...+.++.|.| ++ ..+++++.||.|++||.... ...+.. .|...+.+++
T Consensus 137 -------~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~------~~~~~~-----------~~~~~i~~~~ 191 (313)
T 3odt_A 137 -------NLQAHNASVWDAKVVSFSE-NKFLTASADKTIKLWQNDKV------IKTFSG-----------IHNDVVRHLA 191 (313)
T ss_dssp -------EEECCSSCEEEEEEEETTT-TEEEEEETTSCEEEEETTEE------EEEECS-----------SCSSCEEEEE
T ss_pred -------ecccCCCceeEEEEccCCC-CEEEEEECCCCEEEEecCce------EEEEec-----------cCcccEEEEE
Confidence 4567899999999998 65 89999999999999994321 222222 1457899999
Q ss_pred EeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEec
Q 010287 348 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 426 (513)
Q Consensus 348 ~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 426 (513)
|+|++. +++++ ++.|++||++. ++.+..+..|... +++++|+|++ .|++++.||.|++||+
T Consensus 192 ~~~~~~-~~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~~~~~-~l~~~~~dg~v~iwd~ 253 (313)
T 3odt_A 192 VVDDGH-FISCSNDGLIKLVDMHT-GDVLRTYEGHESF---------------VYCIKLLPNG-DIVSCGEDRTVRIWSK 253 (313)
T ss_dssp EEETTE-EEEEETTSEEEEEETTT-CCEEEEEECCSSC---------------EEEEEECTTS-CEEEEETTSEEEEECT
T ss_pred EcCCCe-EEEccCCCeEEEEECCc-hhhhhhhhcCCce---------------EEEEEEecCC-CEEEEecCCEEEEEEC
Confidence 999999 66655 59999999996 8888888877765 5599999999 5889999999999999
Q ss_pred CCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 427 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 427 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.++ .....+..|..++..+.|+|+++ +++++.|+.|++
T Consensus 254 ~~~-~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i 291 (313)
T 3odt_A 254 ENG-SLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRI 291 (313)
T ss_dssp TTC-CEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEE
T ss_pred CCC-ceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEE
Confidence 987 45578889999999999999998 667889999999
No 79
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.3e-34 Score=270.20 Aligned_cols=298 Identities=13% Similarity=0.139 Sum_probs=218.2
Q ss_pred ccceeEEEeec--CCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 113 EKINKIRWCQS--ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 113 ~~i~~i~~~~~--~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
..|++++|+|. .....+++++.++.|++||+.+++.........
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~---------------------------------- 64 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYV---------------------------------- 64 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEE----------------------------------
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecc----------------------------------
Confidence 89999999873 123467777778899999998765433221110
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC----CCEEEEE-cCCeEEEEEcCCCcc
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD----GETFISA-DDLRINLWNLEISNQ 265 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s~-~d~~i~vwd~~~~~~ 265 (513)
...|...|.+++|+|+ +++|++| .||.|++||+.+++.
T Consensus 65 -------------------------------------~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~ 107 (366)
T 3k26_A 65 -------------------------------------DADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC 107 (366)
T ss_dssp -------------------------------------CSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE
T ss_pred -------------------------------------ccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE
Confidence 1236677999999998 6688888 799999999987654
Q ss_pred eeeecccCccccccccCCeEEEEEeC-CCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEE
Q 010287 266 SFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 344 (513)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 344 (513)
.. .+.+|...|.+++|+| ++ .+|++++.||.|++||+++++. ...+.. +.+|...|.
T Consensus 108 ~~--------~~~~~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~----~~~~~~---------~~~~~~~v~ 165 (366)
T 3k26_A 108 IK--------HYVGHGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDTL----VAIFGG---------VEGHRDEVL 165 (366)
T ss_dssp EE--------EEESCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTEE----EEEECS---------TTSCSSCEE
T ss_pred ee--------eecCCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCeE----EEEecc---------cccccCcee
Confidence 43 4567999999999999 66 9999999999999999988764 222211 244668899
Q ss_pred EEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccc---------------cc-cccccCCccceeeEEEeC
Q 010287 345 DIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPK---------------LC-DLYENDSIFDKFECCLSG 407 (513)
Q Consensus 345 ~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~---------------~~-~~~~~~~~~~v~~~~~s~ 407 (513)
+++|+|++.+|++++. +.|++||++. ++....+..+...... .. ...+.. .|.+++|+
T Consensus 166 ~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~- 240 (366)
T 3k26_A 166 SADYDLLGEKIMSCGMDHSLKLWRINS-KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN---YVDCVRWL- 240 (366)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESCS-HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS---CCCEEEEE-
T ss_pred EEEECCCCCEEEEecCCCCEEEEECCC-CccccccceeEEecCCCCcccccceeeccCccccccCCcc---eEEEEEEc-
Confidence 9999999999999875 9999999985 4433333220000000 00 000111 25589998
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCc-------------cceeecCCCCceeEEEEcCC--CCceeeecCCCeEEEecCCCC
Q 010287 408 DGGRVATGSYSNLFRVFGCSEGSA-------------ESTTLEASKNPMRRQVQTPS--RPSRPLGSLSGVVRRVKGADN 472 (513)
Q Consensus 408 ~~~~l~~~~~dg~i~vwd~~~~~~-------------~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~~~~~~ 472 (513)
+++|++++.|+.|++||+.+... ....+..|..++..++|+|+ +++|++|+.||.|++ |+.
T Consensus 241 -~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~v---wd~ 316 (366)
T 3k26_A 241 -GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYV---WDL 316 (366)
T ss_dssp -TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEE---EEC
T ss_pred -CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEE---EEC
Confidence 77999999999999999987643 24566788889999999999 999999999999999 322
Q ss_pred Cccc----cCCccccc--cCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 473 SALD----ANGNAFDF--SMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 473 ~~~~----~~~~~~~~--~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
...+ .......| ...|++++|+|++++|++++ ++.+++|+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 317 EVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp CSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 2111 11122234 78999999999999999887 66788886
No 80
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-33 Score=254.95 Aligned_cols=283 Identities=15% Similarity=0.173 Sum_probs=225.2
Q ss_pred cceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcc
Q 010287 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (513)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (513)
.+.....+.+|. +.|++++| | ++.+|++++.||.|++||+.+++....
T Consensus 7 ~~~~~~~l~~h~------------~~v~~~~~-~--~~~~l~s~~~dg~v~vw~~~~~~~~~~----------------- 54 (313)
T 3odt_A 7 GYQLSATLKGHD------------QDVRDVVA-V--DDSKVASVSRDGTVRLWSKDDQWLGTV----------------- 54 (313)
T ss_dssp CCEEEEEECCCS------------SCEEEEEE-E--ETTEEEEEETTSEEEEEEESSSEEEEE-----------------
T ss_pred cHHHHHHhhCCC------------CCcEEEEe-c--CCCEEEEEEcCCcEEEEECCCCEEEEE-----------------
Confidence 445667788998 89999999 6 566999999999999999987654332
Q ss_pred cCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEE
Q 010287 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 248 (513)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 248 (513)
...|...|.+++|+|++++|+
T Consensus 55 -----------------------------------------------------------~~~~~~~v~~~~~~~~~~~l~ 75 (313)
T 3odt_A 55 -----------------------------------------------------------VYTGQGFLNSVCYDSEKELLL 75 (313)
T ss_dssp -----------------------------------------------------------EEECSSCEEEEEEETTTTEEE
T ss_pred -----------------------------------------------------------eecCCccEEEEEECCCCCEEE
Confidence 246678899999999999999
Q ss_pred EE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287 249 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 327 (513)
Q Consensus 249 s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 327 (513)
++ .|+.|++|++........+ ..+..|...|.++.|+ + .++++++.||.|++|| .+.. ...
T Consensus 76 ~~~~dg~i~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d--~~~~----~~~---- 137 (313)
T 3odt_A 76 FGGKDTMINGVPLFATSGEDPL-----YTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWK--EGSL----VYN---- 137 (313)
T ss_dssp EEETTSCEEEEETTCCTTSCC------CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEE--TTEE----EEE----
T ss_pred EecCCCeEEEEEeeecCCCCcc-----cchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEc--CCcE----EEe----
Confidence 98 7999999999865422111 2557899999999994 4 6899999999999999 2222 222
Q ss_pred cCCCCccccccccccEEEEEEee-cCCEEEEEeC-CeEEEEEccCCCCCeeeeec-ccccccccccccccCCccceeeEE
Q 010287 328 EAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECC 404 (513)
Q Consensus 328 ~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~ 404 (513)
+..|...+.++.|+| ++.++++++. +.|++||. .+....+.. +... +.+++
T Consensus 138 --------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~---~~~~~~~~~~~~~~---------------i~~~~ 191 (313)
T 3odt_A 138 --------LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN---DKVIKTFSGIHNDV---------------VRHLA 191 (313)
T ss_dssp --------EECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET---TEEEEEECSSCSSC---------------EEEEE
T ss_pred --------cccCCCceeEEEEccCCCCEEEEEECCCCEEEEec---CceEEEEeccCccc---------------EEEEE
Confidence 334557899999999 8999999875 99999993 445555554 4333 45899
Q ss_pred EeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccc
Q 010287 405 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDF 484 (513)
Q Consensus 405 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~ 484 (513)
|+|++. +++++.||.|++||+.++ .....+..|..++.+++|+|++ .+++++.|+.|++ |+....+.......|
T Consensus 192 ~~~~~~-~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~i---wd~~~~~~~~~~~~~ 265 (313)
T 3odt_A 192 VVDDGH-FISCSNDGLIKLVDMHTG-DVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRI---WSKENGSLKQVITLP 265 (313)
T ss_dssp EEETTE-EEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEE---ECTTTCCEEEEEECS
T ss_pred EcCCCe-EEEccCCCeEEEEECCch-hhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEE---EECCCCceeEEEecc
Confidence 999998 899999999999999987 4557888999999999999999 6899999999999 443322333334457
Q ss_pred cCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287 485 SMKLLHLAWHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 485 ~~~i~~~~~sp~~~~la~~~~~~~~i~~ 512 (513)
...|.+++|+|++++++.+.++.+.+|.
T Consensus 266 ~~~i~~~~~~~~~~~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 266 AISIWSVDCMSNGDIIVGSSDNLVRIFS 293 (313)
T ss_dssp SSCEEEEEECTTSCEEEEETTSCEEEEE
T ss_pred CceEEEEEEccCCCEEEEeCCCcEEEEe
Confidence 8899999999999988877899999996
No 81
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.1e-33 Score=253.14 Aligned_cols=241 Identities=17% Similarity=0.185 Sum_probs=191.0
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
+.|++++|+ +++++|++++.|++|++||+..+.....
T Consensus 10 ~~V~~~~~s--~~g~~las~s~D~~v~iw~~~~~~~~~~----------------------------------------- 46 (297)
T 2pm7_B 10 EMIHDAVMD--YYGKRMATCSSDKTIKIFEVEGETHKLI----------------------------------------- 46 (297)
T ss_dssp SCEEEEEEC--TTSSEEEEEETTSCEEEEEBCSSCBCCC-----------------------------------------
T ss_pred CceEEEEEC--CCCCEEEEEeCCCEEEEEecCCCCcEEE-----------------------------------------
Confidence 889999995 4888999999999999999875321110
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC--CCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFNI 269 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~vwd~~~~~~~~~~ 269 (513)
..+.+|...|.+++|+++ +++|++| .|++|++||++++.....
T Consensus 47 ---------------------------------~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~- 92 (297)
T 2pm7_B 47 ---------------------------------DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI- 92 (297)
T ss_dssp ---------------------------------EEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC-
T ss_pred ---------------------------------EEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE-
Confidence 014689999999999863 8899998 799999999986542111
Q ss_pred cccCccccccccCCeEEEEEeCC--CCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287 270 VDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 347 (513)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 347 (513)
..+..|...|.+++|+|+ + .+|++++.|+.|++||++++.... .. .+.+|...|.+++
T Consensus 93 -----~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~--~~------------~~~~h~~~v~~~~ 152 (297)
T 2pm7_B 93 -----AVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTS--PI------------IIDAHAIGVNSAS 152 (297)
T ss_dssp -----EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBC--CE------------EEECCSSCEEEEE
T ss_pred -----EEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCcee--ee------------eeecccCccceEe
Confidence 145678999999999997 6 799999999999999998753211 11 1355668899999
Q ss_pred Eeec-------------CCEEEEEeC-CeEEEEEccCCCC----CeeeeecccccccccccccccCCccceeeEEEeCCC
Q 010287 348 FARN-------------GRHILSRDY-MTLKLWDINMDSG----PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 409 (513)
Q Consensus 348 ~sp~-------------~~~l~~~~~-~~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 409 (513)
|+|+ +++|++|+. +.|++||++. +. ....+.+|... |.+++|+|++
T Consensus 153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~-~~~~~~~~~~l~~H~~~---------------V~~v~~sp~~ 216 (297)
T 2pm7_B 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-DAQTYVLESTLEGHSDW---------------VRDVAWSPTV 216 (297)
T ss_dssp ECCCC------------CCEEEEEETTSCEEEEEEET-TTTEEEEEEEECCCSSC---------------EEEEEECCCC
T ss_pred ecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC-CCceEEEEEEecCCCCc---------------eEEEEECCCC
Confidence 9997 568998875 9999999986 44 44566677665 5599999985
Q ss_pred ---CEEEEEeCCCcEEEEecCCCCc--cceee--cCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 410 ---GRVATGSYSNLFRVFGCSEGSA--ESTTL--EASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 410 ---~~l~~~~~dg~i~vwd~~~~~~--~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
++|++++.|+.|++||+.+... ....+ ..|...+.+++|+|++++||+++.|+.|++
T Consensus 217 ~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~l 280 (297)
T 2pm7_B 217 LLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280 (297)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEE
T ss_pred CCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEE
Confidence 8999999999999999986421 11233 467889999999999999999999999999
No 82
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=8.7e-33 Score=264.63 Aligned_cols=282 Identities=14% Similarity=0.175 Sum_probs=217.5
Q ss_pred ccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (513)
Q Consensus 36 ~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 115 (513)
..+....|+|++++||+|+.||.|+|||+.+++ ....+.+|. ..|
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------~~~~~~~h~------------~~v 142 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-----------------------QREIDQAHV------------SEI 142 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-----------------------EEEETTSSS------------SCE
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-----------------------eeeeccccc------------Ccc
Confidence 556666899999999999999999999976554 234567888 889
Q ss_pred eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCC
Q 010287 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (513)
Q Consensus 116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 195 (513)
++++|+| ++.+|++++.|++|++||+.+++....
T Consensus 143 ~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~-------------------------------------------- 176 (420)
T 3vl1_A 143 TKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRT-------------------------------------------- 176 (420)
T ss_dssp EEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEE--------------------------------------------
T ss_pred EEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceE--------------------------------------------
Confidence 9999965 777999999999999999987653221
Q ss_pred CCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCc
Q 010287 196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 274 (513)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~ 274 (513)
+.+|...|.+++|+|++++|+++ .|+.|++||+++++....+.
T Consensus 177 --------------------------------~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~---- 220 (420)
T 3vl1_A 177 --------------------------------LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN---- 220 (420)
T ss_dssp --------------------------------EECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC----
T ss_pred --------------------------------EcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEee----
Confidence 35788889999999999999998 79999999999766443321
Q ss_pred ccccccc---------------------CCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCc
Q 010287 275 ANMEDLT---------------------EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 333 (513)
Q Consensus 275 ~~~~~~~---------------------~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 333 (513)
....+. ..+.+++|+|++ .+|++++.||.|++||++++... ..+
T Consensus 221 -~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~--------- 285 (420)
T 3vl1_A 221 -RKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQT----IQL--------- 285 (420)
T ss_dssp -BTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEE----EEE---------
T ss_pred -cCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCcee----EEc---------
Confidence 111233 444455567888 89999999999999999887642 111
Q ss_pred cccccccccEEEEEEeecCC-EEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCE
Q 010287 334 SFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 411 (513)
Q Consensus 334 ~~~~~~~~~v~~i~~sp~~~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 411 (513)
...|...|.+++|+|+++ +|++|+. |.|++||+++...++..+..+.... +..+ +.+++++
T Consensus 286 --~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------v~~~-~~~~~~~ 348 (420)
T 3vl1_A 286 --PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTP--------------INNV-YFAAGAL 348 (420)
T ss_dssp --CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSC--------------EEEE-EEETTEE
T ss_pred --ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC--------------ceEE-EeCCCCE
Confidence 123557899999999998 8888875 9999999997445577777643221 3355 4558889
Q ss_pred EEEEeCCCcEEEEecCCCCc--------cceeecCCCCceeEEEEcCCCC---ceeeecCCCeEEE
Q 010287 412 VATGSYSNLFRVFGCSEGSA--------ESTTLEASKNPMRRQVQTPSRP---SRPLGSLSGVVRR 466 (513)
Q Consensus 412 l~~~~~dg~i~vwd~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~~ 466 (513)
|++++.|+.|++|++..... ....+..|...+..++|+|+++ .+++.+.+|.+.+
T Consensus 349 l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~ 414 (420)
T 3vl1_A 349 FVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCAL 414 (420)
T ss_dssp EEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEE
T ss_pred EEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEE
Confidence 99999999999999886422 1234557888999999999999 6666667888877
No 83
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=252.12 Aligned_cols=277 Identities=12% Similarity=0.209 Sum_probs=215.4
Q ss_pred cEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccce
Q 010287 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (513)
Q Consensus 37 ~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~ 116 (513)
.+++|+||+++ +||+|. |++|+|||+.+++.. ....+.+|. ..|+
T Consensus 27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~---------------------~~~~~~~~~------------~~V~ 71 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDIL---------------------QLLQMEQPG------------EYIS 71 (318)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEE---------------------EEEECCSTT------------CCEE
T ss_pred cceEEEECCCC-EEEEEe-CCEEEEEECCCCCEE---------------------EEEEecCCC------------CeEE
Confidence 35789999986 788875 899999998877642 112345666 7899
Q ss_pred eEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCC
Q 010287 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (513)
Q Consensus 117 ~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 196 (513)
+++|+| ++++|++|+.||+|++|++++++....
T Consensus 72 ~v~~~~--~~~~l~sgs~Dg~v~iw~~~~~~~~~~--------------------------------------------- 104 (318)
T 4ggc_A 72 SVAWIK--EGNYLAVGTSSAEVQLWDVQQQKRLRN--------------------------------------------- 104 (318)
T ss_dssp EEEECT--TSSEEEEEETTSEEEEEETTTTEEEEE---------------------------------------------
T ss_pred EEEECC--CCCEEEEEECCCcEEEeecCCceeEEE---------------------------------------------
Confidence 999955 788999999999999999998875443
Q ss_pred CCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCcc
Q 010287 197 SSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 275 (513)
Q Consensus 197 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~ 275 (513)
..+|...+.++. +++..++++ .++.+++|+.........
T Consensus 105 -------------------------------~~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~~------- 144 (318)
T 4ggc_A 105 -------------------------------MTSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHVA------- 144 (318)
T ss_dssp -------------------------------EECCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSCEEE-------
T ss_pred -------------------------------ecCccceEEEee--cCCCEEEEEecCCceEeeecCCCceeEE-------
Confidence 235656565544 456788888 799999999987655443
Q ss_pred ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEE
Q 010287 276 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 355 (513)
Q Consensus 276 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l 355 (513)
.+.+|...+..+.+++++ .++++++.|+.|++||+++++........ ...+.+.|.++.++|++..+
T Consensus 145 ~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~ 211 (318)
T 4ggc_A 145 TLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQT------------FTQHQGAVKAVAWCPWQSNV 211 (318)
T ss_dssp EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEE------------ECCCCSCEEEEEECTTSTTE
T ss_pred EEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceee------------ecccCCceEEEEecCCCCcE
Confidence 457899999999999999 89999999999999999987653222222 23344789999999976544
Q ss_pred E-E--EeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe--CCCcEEEEecCCC
Q 010287 356 L-S--RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS--YSNLFRVFGCSEG 429 (513)
Q Consensus 356 ~-~--~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~vwd~~~~ 429 (513)
+ . ++. +.|++||... .........+. . +..+.|+|+++.+++++ .|+.|++||+.++
T Consensus 212 ~~~~~~~~~~~i~lwd~~~-~~~~~~~~~~~-~---------------v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~ 274 (318)
T 4ggc_A 212 LATGGGTSDRHIRIWNVCS-GACLSAVDAHS-Q---------------VCSILWSPHYKELISGHGFAQNQLVIWKYPTM 274 (318)
T ss_dssp EEEEECTTTCEEEEEETTT-CCEEEEEECSS-C---------------EEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred EEEEecCCCCEEEEEeccc-cccccccccee-e---------------eeeeeecccccceEEEEEcCCCEEEEEECCCC
Confidence 3 3 343 9999999985 44443333222 1 34889999999887654 7999999999987
Q ss_pred CccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 430 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 430 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
....++++|..+|.+++|+|++++|++|+.|+.|++
T Consensus 275 -~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~i 310 (318)
T 4ggc_A 275 -AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 310 (318)
T ss_dssp -CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred -cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence 555889999999999999999999999999999999
No 84
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-34 Score=294.24 Aligned_cols=260 Identities=13% Similarity=0.207 Sum_probs=203.2
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
...+|.+.|++++|+|+|++|++|+.||.|+||++.+... .....+.+|.
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~---------------------~~~~~l~~h~--------- 53 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---------------------KLIDTLTGHE--------- 53 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE---------------------EEEEEECCCS---------
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC---------------------ccceeccCCc---------
Confidence 3458999999999999999999999999999999874321 2445678888
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
+.|.+++|+|..++.+|++++.||.|++||+.+++......
T Consensus 54 ---~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~------------------------------------ 94 (753)
T 3jro_A 54 ---GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV------------------------------------ 94 (753)
T ss_dssp ---SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEE------------------------------------
T ss_pred ---CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccc------------------------------------
Confidence 88999999775448899999999999999998875322211
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC--CCEEEEE-cCCeEEEEEcCCCcce
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 266 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~vwd~~~~~~~ 266 (513)
..+|...|.+++|+|+ ++.+++| .||.|++||+++....
T Consensus 95 --------------------------------------~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~ 136 (753)
T 3jro_A 95 --------------------------------------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT 136 (753)
T ss_dssp --------------------------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC
T ss_pred --------------------------------------ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc
Confidence 3567888999999999 9999998 7999999999876433
Q ss_pred eeecccCccccccccCCeEEEEEeCC-------------CCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCc
Q 010287 267 FNIVDVKPANMEDLTEVITSAEFHPT-------------HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 333 (513)
Q Consensus 267 ~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 333 (513)
.. ..+.+|...|.+++|+|. + .++++++.||.|++||++++.........
T Consensus 137 ~~------~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~---------- 199 (753)
T 3jro_A 137 SP------IIIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLEST---------- 199 (753)
T ss_dssp CC------EEEECCSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEE----------
T ss_pred ce------eEeecCCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeee----------
Confidence 22 145678999999999994 5 89999999999999999876432221222
Q ss_pred cccccccccEEEEEEeec---CCEEEEEeC-CeEEEEEccCCCC----CeeeeecccccccccccccccCCccceeeEEE
Q 010287 334 SFFTEIIASISDIKFARN---GRHILSRDY-MTLKLWDINMDSG----PVATFQVHEHLRPKLCDLYENDSIFDKFECCL 405 (513)
Q Consensus 334 ~~~~~~~~~v~~i~~sp~---~~~l~~~~~-~~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (513)
+.+|...|.+++|+|+ +.+|++++. |.|++||+..... .......|... |++++|
T Consensus 200 --~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~---------------v~~l~~ 262 (753)
T 3jro_A 200 --LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV---------------LWRASW 262 (753)
T ss_dssp --ECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSC---------------CCCEEE
T ss_pred --ecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCc---------------eEEEEE
Confidence 3456689999999999 899999875 9999999986221 11111122222 458999
Q ss_pred eCCCCEEEEEeCCCcEEEEecCCCC
Q 010287 406 SGDGGRVATGSYSNLFRVFGCSEGS 430 (513)
Q Consensus 406 s~~~~~l~~~~~dg~i~vwd~~~~~ 430 (513)
+|++++|++++.||.|++|++..+.
T Consensus 263 spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 263 SLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CTTTCCEEEECSSSCEECCBCCSSS
T ss_pred cCCCCEEEEEcCCCEEEEEecCCCC
Confidence 9999999999999999999998653
No 85
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-34 Score=272.28 Aligned_cols=243 Identities=11% Similarity=0.072 Sum_probs=184.4
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
+.|++++|+| ++.+|++++.|+.|++||+.++......
T Consensus 12 ~~v~~~~~s~--~g~~l~~~~~d~~i~iw~~~~~~~~~~~---------------------------------------- 49 (377)
T 3dwl_C 12 KPSYEHAFNS--QRTEFVTTTATNQVELYEQDGNGWKHAR---------------------------------------- 49 (377)
T ss_dssp SCCSCCEECS--SSSEEECCCSSSCBCEEEEETTEEEECC----------------------------------------
T ss_pred CcEEEEEECC--CCCEEEEecCCCEEEEEEccCCceEEEE----------------------------------------
Confidence 7799999965 7789999999999999999876321110
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
.+.+|...|.+++|+|++++|+++ .|+.|++||+.++......
T Consensus 50 ----------------------------------~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~-- 93 (377)
T 3dwl_C 50 ----------------------------------TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQT-- 93 (377)
T ss_dssp ----------------------------------CBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCE--
T ss_pred ----------------------------------EEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeee--
Confidence 035788889999999999999998 6999999999876511111
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccccc-ccccEEEEEEee
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKFAR 350 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~sp 350 (513)
..+..|...|.+++|+|++ ++|++++.|+.|++||++++.... .... +.+ |...|.+++|+|
T Consensus 94 ---~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~-~~~~------------~~~~h~~~v~~~~~~~ 156 (377)
T 3dwl_C 94 ---LVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWW-VSKH------------LKRPLRSTILSLDWHP 156 (377)
T ss_dssp ---EECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CC-CCEE------------ECSSCCSCEEEEEECT
T ss_pred ---eEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccce-eeeE------------eecccCCCeEEEEEcC
Confidence 1456799999999999998 899999999999999998765210 0122 233 668899999999
Q ss_pred cCCEEEEEeC-CeEEEEEccCC-----------------CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEE
Q 010287 351 NGRHILSRDY-MTLKLWDINMD-----------------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 412 (513)
Q Consensus 351 ~~~~l~~~~~-~~v~iwd~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 412 (513)
++++|++++. +.|++||+... ++++..+ .|.. .|++++|+|++++|
T Consensus 157 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------------~v~~~~~sp~~~~l 220 (377)
T 3dwl_C 157 NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG---------------WVHAVGFSPSGNAL 220 (377)
T ss_dssp TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS---------------SEEEEEECTTSSCE
T ss_pred CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc---------------eEEEEEECCCCCEE
Confidence 9999999875 99999999631 1111222 2222 25699999999999
Q ss_pred EEEeCCCcEEEEecCCCCcc---ceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 413 ATGSYSNLFRVFGCSEGSAE---STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 413 ~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
++++.||.|++||+.++... ...+..|..++.+++|+|++++|++|+.++.+.+
T Consensus 221 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 277 (377)
T 3dwl_C 221 AYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILL 277 (377)
T ss_dssp EEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEE
Confidence 99999999999999988541 5778899999999999999999999998888866
No 86
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-33 Score=266.54 Aligned_cols=276 Identities=9% Similarity=0.167 Sum_probs=217.9
Q ss_pred ccccc--EEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEecccc-CCCCcccccccc
Q 010287 33 QEVDI--ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKSL 109 (513)
Q Consensus 33 ~h~~~--V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~ 109 (513)
+|.+. +.+++|++ ..+++++.||.|++|++.+++.. ..+. .|.
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~-----------------------~~~~~~~~--------- 134 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVS-----------------------ALAETDES--------- 134 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEE-----------------------EEEECCTT---------
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEe-----------------------EeeecCCC---------
Confidence 45444 44455554 56888889999999998776531 1122 255
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
..|.+++|+| ++.+|++++.||.|++||+.+++....
T Consensus 135 ---~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------------------------------- 171 (401)
T 4aez_A 135 ---TYVASVKWSH--DGSFLSVGLGNGLVDIYDVESQTKLRT-------------------------------------- 171 (401)
T ss_dssp ---CCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEE--------------------------------------
T ss_pred ---CCEEEEEECC--CCCEEEEECCCCeEEEEECcCCeEEEE--------------------------------------
Confidence 7899999965 778999999999999999987754332
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~ 268 (513)
+.+|...|.+++| +++.|+++ .|+.|++||++.......
T Consensus 172 --------------------------------------~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~ 211 (401)
T 4aez_A 172 --------------------------------------MAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIG 211 (401)
T ss_dssp --------------------------------------ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE
T ss_pred --------------------------------------ecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceee
Confidence 2467788999999 45788888 799999999985554433
Q ss_pred ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 348 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 348 (513)
.+.+|...|.+++|+|++ .+|++++.|+.|++||++++.. ... +.+|...|.+++|
T Consensus 212 -------~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~----~~~------------~~~~~~~v~~~~~ 267 (401)
T 4aez_A 212 -------TLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIP----KFT------------KTNHNAAVKAVAW 267 (401)
T ss_dssp -------EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSE----EEE------------ECCCSSCCCEEEE
T ss_pred -------EEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCc----cEE------------ecCCcceEEEEEE
Confidence 457799999999999998 9999999999999999987654 222 2345578999999
Q ss_pred eecCC-EEEEEe---CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEE--EeCCCcEE
Q 010287 349 ARNGR-HILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT--GSYSNLFR 422 (513)
Q Consensus 349 sp~~~-~l~~~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg~i~ 422 (513)
+|++. ++++++ ++.|++||+.+ ++.+..+..+.. +.+++|+|++++|++ |+.||.|+
T Consensus 268 ~p~~~~ll~~~~gs~d~~i~i~d~~~-~~~~~~~~~~~~----------------v~~~~~s~~~~~l~~~~g~~dg~i~ 330 (401)
T 4aez_A 268 CPWQSNLLATGGGTMDKQIHFWNAAT-GARVNTVDAGSQ----------------VTSLIWSPHSKEIMSTHGFPDNNLS 330 (401)
T ss_dssp CTTSTTEEEEECCTTTCEEEEEETTT-CCEEEEEECSSC----------------EEEEEECSSSSEEEEEECTTTCEEE
T ss_pred CCCCCCEEEEecCCCCCEEEEEECCC-CCEEEEEeCCCc----------------EEEEEECCCCCeEEEEeecCCCcEE
Confidence 99764 555654 59999999996 777777653322 458999999999998 44899999
Q ss_pred EEecCCCCccc-eeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 423 VFGCSEGSAES-TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 423 vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
+||+.++.... ..+.+|...+..++|+|++++|++++.||.|++
T Consensus 331 v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~i 375 (401)
T 4aez_A 331 IWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKF 375 (401)
T ss_dssp EEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEE
T ss_pred EEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 99999763332 457789999999999999999999999999999
No 87
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=7.4e-34 Score=260.37 Aligned_cols=243 Identities=14% Similarity=0.160 Sum_probs=192.4
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
+.|++++|+| ++++|++++.|++|++||+.++......
T Consensus 14 ~~V~~v~~s~--~g~~lasgs~D~~v~lwd~~~~~~~~~~---------------------------------------- 51 (316)
T 3bg1_A 14 DMIHDAQMDY--YGTRLATCSSDRSVKIFDVRNGGQILIA---------------------------------------- 51 (316)
T ss_dssp CCEEEEEECG--GGCEEEEEETTTEEEEEEEETTEEEEEE----------------------------------------
T ss_pred CeEEEeeEcC--CCCEEEEEeCCCeEEEEEecCCCcEEEE----------------------------------------
Confidence 8999999965 7889999999999999999876422110
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc--CCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNI 269 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~-~d~~i~vwd~~~~~~~~~~ 269 (513)
.+.+|...|.+++|++ ++++|++| .|++|++||++++.....
T Consensus 52 ----------------------------------~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~- 96 (316)
T 3bg1_A 52 ----------------------------------DLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKS- 96 (316)
T ss_dssp ----------------------------------EEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEE-
T ss_pred ----------------------------------EEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEE-
Confidence 1468999999999986 48899998 799999999986532111
Q ss_pred cccCccccccccCCeEEEEEeCC--CCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287 270 VDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 347 (513)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 347 (513)
..+.+|...|.+++|+|+ + .+|++++.|+.|++||++.+.... ... .+.+|...+.+++
T Consensus 97 -----~~~~~h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~~~-~~~------------~~~~h~~~v~~~~ 157 (316)
T 3bg1_A 97 -----HEHAGHDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQWE-VKK------------INNAHTIGCNAVS 157 (316)
T ss_dssp -----EEECCCSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSSSCEE-ECC------------BTTSSSSCBCCCE
T ss_pred -----EEccCCCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCCcc-eee------------eeccccCCcceEE
Confidence 145789999999999998 5 799999999999999997653210 001 1345667899999
Q ss_pred Eeec-----------------CCEEEEEeC-CeEEEEEccCCC--CCeeeeecccccccccccccccCCccceeeEEEeC
Q 010287 348 FARN-----------------GRHILSRDY-MTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 407 (513)
Q Consensus 348 ~sp~-----------------~~~l~~~~~-~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 407 (513)
|+|+ +++|++|+. +.|++||++... +++..+.+|... |.+++|+|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~---------------V~~v~~sp 222 (316)
T 3bg1_A 158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW---------------VRDVAWAP 222 (316)
T ss_dssp ECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSC---------------EEEEECCC
T ss_pred EccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCc---------------eEEEEecC
Confidence 9997 468888774 999999997422 245566777655 55999999
Q ss_pred CC----CEEEEEeCCCcEEEEecCCCC---ccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 408 DG----GRVATGSYSNLFRVFGCSEGS---AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 408 ~~----~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
++ ++|++++.|++|++|++.+.. .....+..|..+|.+++|+|++++||+++.|+.|++
T Consensus 223 ~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~l 288 (316)
T 3bg1_A 223 SIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTL 288 (316)
T ss_dssp CSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEE
T ss_pred CCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEE
Confidence 87 889999999999999998631 123456678899999999999999999999999999
No 88
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=5.7e-33 Score=258.83 Aligned_cols=273 Identities=13% Similarity=0.173 Sum_probs=204.6
Q ss_pred cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
..+|.+.|++++|+|++++||+|+.||.|+||++.+... .......+.+|.
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------------------~~~~~~~~~~~~---------- 57 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-------------------NWELSDSWRAHD---------- 57 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC-------------------CEEEEEEEECCS----------
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC-------------------cceecceeccCC----------
Confidence 458999999999999999999999999999999876542 223445677888
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
..|.+++|+|..++.+|++++.||.|++||+..++......
T Consensus 58 --~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~------------------------------------- 98 (351)
T 3f3f_A 58 --SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGR------------------------------------- 98 (351)
T ss_dssp --SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSC-------------------------------------
T ss_pred --CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccccc-------------------------------------
Confidence 88999999764457899999999999999998764211000
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC--CCEEEEE-cCCeEEEEEcCCCccee
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSF 267 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~vwd~~~~~~~~ 267 (513)
. ... ...+..|...|.+++|+|+ +++|+++ .|+.|++||+++.+...
T Consensus 99 ---------------~--------------~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 148 (351)
T 3f3f_A 99 ---------------R--------------WNK-LCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLR 148 (351)
T ss_dssp ---------------S--------------EEE-EEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTT
T ss_pred ---------------C--------------cce-eeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhc
Confidence 0 001 1114578899999999999 9999998 79999999998765432
Q ss_pred eec-----ccCccccccccCCeEEEEEeCC---CCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccc
Q 010287 268 NIV-----DVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 339 (513)
Q Consensus 268 ~~~-----~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (513)
.+. .........|...+.+++|+|+ + .++++++.++.+.+|+...+... .... +.+|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~--~~~~------------~~~h 213 (351)
T 3f3f_A 149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGKDGKLH--VAAK------------LPGH 213 (351)
T ss_dssp CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECTTSCEE--EEEE------------CCCC
T ss_pred cccccccccccccccCCcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccCCCcee--eeee------------cCCC
Confidence 110 0000112367888999999997 6 89999999999988887665431 0111 3456
Q ss_pred cccEEEEEEeecC----CEEEEEeC-CeEEEEEccCCC------------------------------------------
Q 010287 340 IASISDIKFARNG----RHILSRDY-MTLKLWDINMDS------------------------------------------ 372 (513)
Q Consensus 340 ~~~v~~i~~sp~~----~~l~~~~~-~~v~iwd~~~~~------------------------------------------ 372 (513)
...|.+++|+|++ .+|++++. +.|++||++...
T Consensus 214 ~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (351)
T 3f3f_A 214 KSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSN 293 (351)
T ss_dssp CSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCS
T ss_pred CcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccc
Confidence 6899999999998 78888875 999999998521
Q ss_pred ---CCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc
Q 010287 373 ---GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 431 (513)
Q Consensus 373 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 431 (513)
+.+..+.+|.. .|++++|+|++++|++++.||.|++|++.+++.
T Consensus 294 ~~~~~~~~~~~h~~---------------~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 294 LQVELLSEHDDHNG---------------EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp EEEEEEEEECTTSS---------------CEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred ccccEEEEEecccc---------------cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 12222222322 266999999999999999999999999997743
No 89
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.5e-33 Score=259.92 Aligned_cols=246 Identities=13% Similarity=0.131 Sum_probs=186.1
Q ss_pred cccCCeEEEEeccC---CCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEE------eCCCCeEEEE
Q 010287 230 AHDYHINSISNNSD---GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF------HPTHCNMLAY 299 (513)
Q Consensus 230 ~h~~~v~~~~~~~~---~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~l~~ 299 (513)
+|...|.+++|+|+ +++|+++ .|+.|++||+.+++.... .+.+|...|.++.| +|++ .+|++
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~ 134 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY-------SVKGHKEIINAIDGIGGLGIGEGA-PEIVT 134 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE-------EECCCSSCEEEEEEESGGGCC-CC-CEEEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE-------EEEecccceEEEeeccccccCCCc-cEEEE
Confidence 67788999999998 6899998 799999999997662322 45789999999965 5777 89999
Q ss_pred EeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE----EeecCCEEEEEeC-CeEEEEEccCCCCC
Q 010287 300 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK----FARNGRHILSRDY-MTLKLWDINMDSGP 374 (513)
Q Consensus 300 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~----~sp~~~~l~~~~~-~~v~iwd~~~~~~~ 374 (513)
++.||.|++||++++... ...+..+.. .+...+.+++ |+|+++++++++. +.|++||++. ++.
T Consensus 135 ~~~d~~i~vwd~~~~~~~---~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~ 202 (357)
T 3i2n_A 135 GSRDGTVKVWDPRQKDDP---VANMEPVQG--------ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN-MAL 202 (357)
T ss_dssp EETTSCEEEECTTSCSSC---SEEECCCTT--------SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT-TEE
T ss_pred EeCCCeEEEEeCCCCCCc---ceeccccCC--------CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc-Cce
Confidence 999999999999887522 333332221 1124788888 6789999999886 9999999986 444
Q ss_pred eeeeecccccccccccccccCCccceeeEEEeC---CCCEEEEEeCCCcEEEEecCCCCccceee-----cCCCCceeEE
Q 010287 375 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSG---DGGRVATGSYSNLFRVFGCSEGSAESTTL-----EASKNPMRRQ 446 (513)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~v~~~ 446 (513)
.. ...+... +.+++|+| ++++|++++.||.|++||+.++... ..+ .+|..++.++
T Consensus 203 ~~-~~~~~~~---------------v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~v~~~ 265 (357)
T 3i2n_A 203 RW-ETNIKNG---------------VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT-KGFASVSEKAHKSTVWQV 265 (357)
T ss_dssp EE-EEECSSC---------------EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT-TEEEEEEEECCSSCEEEE
T ss_pred ee-ecCCCCc---------------eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc-cceeeeccCCCcCCEEEE
Confidence 32 2333332 55899999 9999999999999999999876333 333 3899999999
Q ss_pred EEcCCCC-ceeeecCCCeEEEecCCCCCc----------------cccCCccccccCCeeEEEEeCCCCEEE-EEc-CCc
Q 010287 447 VQTPSRP-SRPLGSLSGVVRRVKGADNSA----------------LDANGNAFDFSMKLLHLAWHPSENSIA-CAA-SNS 507 (513)
Q Consensus 447 ~~~~~~~-~l~~~~~d~~i~~~~~~~~~~----------------~~~~~~~~~~~~~i~~~~~sp~~~~la-~~~-~~~ 507 (513)
.|+|+++ ++++++.||.|++.+...... .........|...|++++|+|++++|+ +++ ++.
T Consensus 266 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~ 345 (357)
T 3i2n_A 266 RHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQT 345 (357)
T ss_dssp EEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred EECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCc
Confidence 9999999 899999999999911111000 011222345889999999999999998 566 778
Q ss_pred EEEEe
Q 010287 508 LYMYY 512 (513)
Q Consensus 508 ~~i~~ 512 (513)
+++|+
T Consensus 346 i~iw~ 350 (357)
T 3i2n_A 346 VRVLI 350 (357)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88886
No 90
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=257.65 Aligned_cols=295 Identities=14% Similarity=0.178 Sum_probs=221.9
Q ss_pred ccccccccEEEEEEcCC---CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccc
Q 010287 30 EEVQEVDIISAIEFDKS---GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~---g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (513)
...+|.+.|++++|+|+ |++||+|+.||.|+||++.+... .....+.+|.
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------------------~~~~~~~~h~------ 86 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------------------TIPKAQQMHT------ 86 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------------------EEEEEEEECS------
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------------------eeEEEecccc------
Confidence 35579999999999999 69999999999999999976332 1334567788
Q ss_pred ccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (513)
Q Consensus 107 ~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 186 (513)
..|.+++|+| ++.+|++++.||.|++||+.+++...
T Consensus 87 ------~~v~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~------------------------------------ 122 (368)
T 3mmy_A 87 ------GPVLDVCWSD--DGSKVFTASCDKTAKMWDLSSNQAIQ------------------------------------ 122 (368)
T ss_dssp ------SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEE------------------------------------
T ss_pred ------CCEEEEEECc--CCCEEEEEcCCCcEEEEEcCCCCcee------------------------------------
Confidence 8899999965 77899999999999999998876432
Q ss_pred ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEe--ccCCCEEEEE-cCCeEEEEEcCCC
Q 010287 187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISN--NSDGETFISA-DDLRINLWNLEIS 263 (513)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~s~-~d~~i~vwd~~~~ 263 (513)
...|...|.+++| ++++++|+++ .|+.|++||++++
T Consensus 123 -----------------------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 123 -----------------------------------------IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp -----------------------------------------EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS
T ss_pred -----------------------------------------eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC
Confidence 2357788999999 8899999998 7999999999876
Q ss_pred cceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccE
Q 010287 264 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 343 (513)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 343 (513)
+.... +.. ...+.++.+.+ ..+++++.++.+++||++...... .... ..+...+
T Consensus 162 ~~~~~--------~~~-~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~---~~~~-----------~~~~~~~ 215 (368)
T 3mmy_A 162 NPMMV--------LQL-PERCYCADVIY---PMAVVATAERGLIVYQLENQPSEF---RRIE-----------SPLKHQH 215 (368)
T ss_dssp SCSEE--------EEC-SSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEE---EECC-----------CSCSSCE
T ss_pred cEEEE--------Eec-CCCceEEEecC---CeeEEEeCCCcEEEEEeccccchh---hhcc-----------ccccCCC
Confidence 64432 233 34577777765 467888999999999998754321 1111 1122456
Q ss_pred EEEEEeecCCE----EEEEeC-CeEEEEEccCCC--CCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe
Q 010287 344 SDIKFARNGRH----ILSRDY-MTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 416 (513)
Q Consensus 344 ~~i~~sp~~~~----l~~~~~-~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 416 (513)
.++.+.++... +++++. +.|++||++... ..+..+..|.......... .....|++++|+|++++|++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~s~~ 292 (368)
T 3mmy_A 216 RCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAP---QDIYAVNGIAFHPVHGTLATVG 292 (368)
T ss_dssp EEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCC---EEECCEEEEEECTTTCCEEEEE
T ss_pred ceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccc---ccccceEEEEEecCCCEEEEEc
Confidence 77777766554 777765 999999998621 3455666655321100000 0011256999999999999999
Q ss_pred CCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 417 YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 417 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.||.|++||+.++ .....+..|..++.+++|+|++++|++++.|+..+.
T Consensus 293 ~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~ 341 (368)
T 3mmy_A 293 SDGRFSFWDKDAR-TKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKG 341 (368)
T ss_dssp TTSCEEEEETTTT-EEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTC
T ss_pred cCCeEEEEECCCC-cEEEEecCCCCCceEEEECCCCCeEEEEeccccccc
Confidence 9999999999987 455788899999999999999999999998876555
No 91
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.6e-33 Score=263.10 Aligned_cols=245 Identities=10% Similarity=0.091 Sum_probs=178.3
Q ss_pred ccccCCeEEEEeccCCCEEEE-----------E-cCCeEEEEEcCCCcceeeeccc-CccccccccCCeEEEEEeCCCCe
Q 010287 229 HAHDYHINSISNNSDGETFIS-----------A-DDLRINLWNLEISNQSFNIVDV-KPANMEDLTEVITSAEFHPTHCN 295 (513)
Q Consensus 229 ~~h~~~v~~~~~~~~~~~l~s-----------~-~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~ 295 (513)
.+|...|.+++++ ++.+++ + .|+.+++|++............ .......+...+.+++|+||| +
T Consensus 70 ~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-~ 146 (365)
T 4h5i_A 70 EDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-T 146 (365)
T ss_dssp CTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-S
T ss_pred cCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-C
Confidence 4566667776654 344444 3 3788999998765543332211 001223455678999999999 7
Q ss_pred EEEE--EeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCC
Q 010287 296 MLAY--SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSG 373 (513)
Q Consensus 296 ~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~ 373 (513)
++++ ++.|+.|++||+++++. ...++ |...|.+++|+|||+++++++++.+.+|+... +.
T Consensus 147 ~la~as~~~d~~i~iwd~~~~~~----~~~~~-------------~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~-~~ 208 (365)
T 4h5i_A 147 VAAIASSKVPAIMRIIDPSDLTE----KFEIE-------------TRGEVKDLHFSTDGKVVAYITGSSLEVISTVT-GS 208 (365)
T ss_dssp CEEEEESCSSCEEEEEETTTTEE----EEEEE-------------CSSCCCEEEECTTSSEEEEECSSCEEEEETTT-CC
T ss_pred EEEEEECCCCCEEEEeECCCCcE----EEEeC-------------CCCceEEEEEccCCceEEeccceeEEEEEecc-Cc
Confidence 6654 44789999999998765 22222 33679999999999999999987788888775 44
Q ss_pred Ceee--eecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC----cEEEEecCCCCcc---ceeecCCCCcee
Q 010287 374 PVAT--FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN----LFRVFGCSEGSAE---STTLEASKNPMR 444 (513)
Q Consensus 374 ~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~vwd~~~~~~~---~~~~~~~~~~v~ 444 (513)
.+.. ...|... +.+++|+|+++++++++.|+ .+++|++...... ...+.+|..+|.
T Consensus 209 ~~~~~~~~~~~~~---------------v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~ 273 (365)
T 4h5i_A 209 CIARKTDFDKNWS---------------LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGIT 273 (365)
T ss_dssp EEEEECCCCTTEE---------------EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEE
T ss_pred ceeeeecCCCCCC---------------EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeE
Confidence 4332 2233332 45899999999999999887 6888998765332 245678999999
Q ss_pred EEEEcCCCCceeeecCCCeEEEecCCCCCccccCCc-cccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 445 RQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGN-AFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 445 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
+++|+|++++||+|+.|+.|+| |+......... ...|...|++++||||+++||+++ |+.++||.
T Consensus 274 ~~~~Spdg~~lasgs~D~~V~i---wd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 274 SMDVDMKGELAVLASNDNSIAL---VKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIK 340 (365)
T ss_dssp EEEECTTSCEEEEEETTSCEEE---EETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred eEEECCCCCceEEEcCCCEEEE---EECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 9999999999999999999999 44332222222 246999999999999999999888 78899986
No 92
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.5e-32 Score=263.88 Aligned_cols=269 Identities=13% Similarity=0.261 Sum_probs=219.8
Q ss_pred cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccc
Q 010287 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (513)
Q Consensus 33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (513)
+|...|+|++| ++++|++|+.||.|++||+.+++. ...+.+|.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~-----------------------~~~~~~h~------------ 173 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC-----------------------KRILTGHT------------ 173 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE-----------------------EEEECCCS------------
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeE-----------------------EEEEcCCC------------
Confidence 56778999887 789999999999999999876553 35577888
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
..|.+++| ++.++++++.||+|++||+.+++....
T Consensus 174 ~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~~~~----------------------------------------- 208 (435)
T 1p22_A 174 GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNT----------------------------------------- 208 (435)
T ss_dssp SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEEEE-----------------------------------------
T ss_pred CcEEEEEE----CCCEEEEEcCCCeEEEEECCCCcEEEE-----------------------------------------
Confidence 88999999 567999999999999999988764332
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
+.+|...|.+++|++ ..+++| .|+.|++||++++......
T Consensus 209 -----------------------------------~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~-- 249 (435)
T 1p22_A 209 -----------------------------------LIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLR-- 249 (435)
T ss_dssp -----------------------------------ECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEE--
T ss_pred -----------------------------------EcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceee--
Confidence 246778899999974 488887 7999999999876543211
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 351 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 351 (513)
..+.+|...|.+++| ++ .++++++.||.|++||+++++. +..+ .+|...|.++.+ +
T Consensus 250 ---~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~vwd~~~~~~----~~~~------------~~~~~~v~~~~~--~ 305 (435)
T 1p22_A 250 ---RVLVGHRAAVNVVDF--DD-KYIVSASGDRTIKVWNTSTCEF----VRTL------------NGHKRGIACLQY--R 305 (435)
T ss_dssp ---EEECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEETTTCCE----EEEE------------ECCSSCEEEEEE--E
T ss_pred ---eEecCCCCcEEEEEe--CC-CEEEEEeCCCeEEEEECCcCcE----EEEE------------cCCCCcEEEEEe--C
Confidence 145789999999999 44 7899999999999999988765 3333 345578999988 4
Q ss_pred CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287 352 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 430 (513)
Q Consensus 352 ~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 430 (513)
+.++++|+. +.|++||+++ ++.+..+.+|... |.+++| ++++|++|+.||.|++||+.++.
T Consensus 306 ~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 306 DRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEEL---------------VRCIRF--DNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp TTEEEEEETTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred CCEEEEEeCCCeEEEEECCC-CCEEEEEeCCcCc---------------EEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence 678888775 9999999997 8888888888765 346777 78899999999999999997653
Q ss_pred c--------cceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 431 A--------ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 431 ~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
. ....+.+|..+|.++.+ ++.+|++++.||.|++
T Consensus 368 ~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~i 409 (435)
T 1p22_A 368 DPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI 409 (435)
T ss_dssp STTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEE
T ss_pred CccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEE
Confidence 1 44678899999999999 7889999999999999
No 93
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.6e-33 Score=262.21 Aligned_cols=263 Identities=16% Similarity=0.300 Sum_probs=203.2
Q ss_pred cccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEe
Q 010287 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (513)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (513)
...|+... ++........|...|++++|+|++++||+|+.||.|+|||+.+++. .
T Consensus 115 v~lw~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~-----------------------~ 169 (401)
T 4aez_A 115 VYVWNADS--GSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK-----------------------L 169 (401)
T ss_dssp EEEEETTT--CCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------------------E
T ss_pred EEEeeCCC--CcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE-----------------------E
Confidence 44465543 2222223344889999999999999999999999999999876553 3
Q ss_pred ccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCccc
Q 010287 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (513)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (513)
..+.+|. ..|.+++|. +..+++++.||.|++||++......
T Consensus 170 ~~~~~~~------------~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~----------------------- 210 (401)
T 4aez_A 170 RTMAGHQ------------ARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQI----------------------- 210 (401)
T ss_dssp EEECCCS------------SCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEE-----------------------
T ss_pred EEecCCC------------CceEEEEEC----CCEEEEEcCCCCEEEEecccCccee-----------------------
Confidence 4566888 889999993 3599999999999999998432110
Q ss_pred ccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cC
Q 010287 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD 252 (513)
Q Consensus 174 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d 252 (513)
..+.+|...|.+++|+|++++|+++ .|
T Consensus 211 ----------------------------------------------------~~~~~~~~~v~~~~~~~~~~~l~s~~~d 238 (401)
T 4aez_A 211 ----------------------------------------------------GTLQGHSSEVCGLAWRSDGLQLASGGND 238 (401)
T ss_dssp ----------------------------------------------------EEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred ----------------------------------------------------eEEcCCCCCeeEEEEcCCCCEEEEEeCC
Confidence 0135788889999999999999998 79
Q ss_pred CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe--CCCcEEEEEcCCcccccccceeeccccCC
Q 010287 253 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLIDMRQSALCDTHSKLFEEQEAP 330 (513)
Q Consensus 253 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 330 (513)
+.|++||++++.... .+..|...|.+++|+|++..++++++ .|+.|++||++++.. ...+.
T Consensus 239 ~~v~iwd~~~~~~~~--------~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~----~~~~~----- 301 (401)
T 4aez_A 239 NVVQIWDARSSIPKF--------TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR----VNTVD----- 301 (401)
T ss_dssp SCEEEEETTCSSEEE--------EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE----EEEEE-----
T ss_pred CeEEEccCCCCCccE--------EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE----EEEEe-----
Confidence 999999999765443 34678999999999998867888876 799999999998765 33332
Q ss_pred CCccccccccccEEEEEEeecCCEEEEE--e-CCeEEEEEccCCCCCeee--eecccccccccccccccCCccceeeEEE
Q 010287 331 GTRSFFTEIIASISDIKFARNGRHILSR--D-YMTLKLWDINMDSGPVAT--FQVHEHLRPKLCDLYENDSIFDKFECCL 405 (513)
Q Consensus 331 ~~~~~~~~~~~~v~~i~~sp~~~~l~~~--~-~~~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (513)
+...+.+++|+|++++++++ . ++.|++||+.. +..... +.+|... |++++|
T Consensus 302 --------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~-~~~~~~~~~~~h~~~---------------v~~~~~ 357 (401)
T 4aez_A 302 --------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS-SGLTKQVDIPAHDTR---------------VLYSAL 357 (401)
T ss_dssp --------CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET-TEEEEEEEEECCSSC---------------CCEEEE
T ss_pred --------CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC-ccceeEEEecCCCCC---------------EEEEEE
Confidence 22579999999999999984 3 49999999985 444333 4455543 458999
Q ss_pred eCCCCEEEEEeCCCcEEEEecCCCCccc
Q 010287 406 SGDGGRVATGSYSNLFRVFGCSEGSAES 433 (513)
Q Consensus 406 s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 433 (513)
+|++++|++++.||.|++|++.++....
T Consensus 358 s~dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 358 SPDGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp CTTSSEEEEECTTSEEEEEECCC-----
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence 9999999999999999999999875443
No 94
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-34 Score=276.18 Aligned_cols=293 Identities=10% Similarity=0.083 Sum_probs=203.6
Q ss_pred ccccccEEEEEEcCC------CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccc
Q 010287 32 VQEVDIISAIEFDKS------GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (513)
Q Consensus 32 ~~h~~~V~~v~~sp~------g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (513)
..|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++...... .+ . .......+.+|.
T Consensus 204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~--~~---------~-~~~p~~~l~~h~----- 266 (524)
T 2j04_B 204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV--FK---------M-CEKPSLTLSLAD----- 266 (524)
T ss_dssp EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE--EE---------C-CCSCSEEECCTT-----
T ss_pred EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc--ce---------e-ecCceEEEEcCC-----
Confidence 456889999999997 579999999999999998765421000 00 0 000112456777
Q ss_pred cccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCc
Q 010287 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (513)
Q Consensus 106 ~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 185 (513)
..|++++|+| + ..|++|+.||+|++||++++....
T Consensus 267 -------~~v~sv~~s~--~-~~lasgs~DgtV~lWD~~~~~~~~----------------------------------- 301 (524)
T 2j04_B 267 -------SLITTFDFLS--P-TTVVCGFKNGFVAEFDLTDPEVPS----------------------------------- 301 (524)
T ss_dssp -------TCEEEEEESS--S-SEEEEEETTSEEEEEETTBCSSCS-----------------------------------
T ss_pred -------CCEEEEEecC--C-CeEEEEeCCCEEEEEECCCCCCce-----------------------------------
Confidence 8899999964 3 489999999999999998652110
Q ss_pred cccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEE--EeccCC-CEEEEE-cCCeEEEEEcC
Q 010287 186 GERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSI--SNNSDG-ETFISA-DDLRINLWNLE 261 (513)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~-~~l~s~-~d~~i~vwd~~ 261 (513)
..+.+|...|.++ +|++++ ++|++| .|++|++||++
T Consensus 302 ----------------------------------------~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~ 341 (524)
T 2j04_B 302 ----------------------------------------FYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK 341 (524)
T ss_dssp ----------------------------------------EEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGG
T ss_pred ----------------------------------------EEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECC
Confidence 0135788999999 578887 889998 79999999998
Q ss_pred CCcceeeecccCcccccccc--CCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccc
Q 010287 262 ISNQSFNIVDVKPANMEDLT--EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 339 (513)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (513)
+++... .+.+|. ..|.+++|+|++ ..+++++.|+.|++||++++.. ... +.+|
T Consensus 342 ~~~~~~--------~~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~----~~~------------l~gH 396 (524)
T 2j04_B 342 DIATTK--------TTVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFA----VHP------------LVSR 396 (524)
T ss_dssp GHHHHC--------EEEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTC----CEE------------EEEC
T ss_pred CCCccc--------ccccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECccccc----cee------------eecC
Confidence 655332 233444 247899999998 7899999999999999988654 222 3456
Q ss_pred cccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC
Q 010287 340 IASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 418 (513)
Q Consensus 340 ~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 418 (513)
.+.|++++|+|++++|++|+. ++|++||+.. ..+.......... ....++.++|+|+++.+. ...
T Consensus 397 ~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~--~~~~~~~~~~~~~----------~~~~v~~v~~sp~g~~~~-~~~- 462 (524)
T 2j04_B 397 ETTITAIGVSRLHPMVLAGSADGSLIITNAAR--RLLHGIKNSSATQ----------KSLRLWKWDYSIKDDKYR-IDS- 462 (524)
T ss_dssp SSCEEEEECCSSCCBCEEEETTTEEECCBSCS--STTTCC------C----------CCCEEEECBCCSSSCEEE-ECC-
T ss_pred CCceEEEEeCCCCCeEEEEECCCEEEEEechH--hhccccccCccce----------eeeEEEEeccCCCCCeEE-ccC-
Confidence 689999999999999999875 9999999863 3332221111000 000145789999998553 222
Q ss_pred CcEEEEecCCCCccceeecCCCCceeEEEEcCCCC---ceeeecCCCeEEE
Q 010287 419 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP---SRPLGSLSGVVRR 466 (513)
Q Consensus 419 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~~ 466 (513)
.+.+|+..........+.+|..+|.+++|+|++. ++|+|+.||.|+|
T Consensus 463 -~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrl 512 (524)
T 2j04_B 463 -SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTL 512 (524)
T ss_dssp -CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEE
T ss_pred -CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEE
Confidence 2334443322245578889999999999999965 8999999999999
No 95
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.8e-32 Score=263.65 Aligned_cols=314 Identities=12% Similarity=0.152 Sum_probs=230.1
Q ss_pred ccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceE
Q 010287 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (513)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (513)
....|++.. + +......+|.+.|++++|+|++ +|++|+.||+|++||+.+++.
T Consensus 143 ~i~vwd~~~--~-~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~----------------------- 195 (464)
T 3v7d_B 143 MIRVYDSIN--K-KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCC----------------------- 195 (464)
T ss_dssp CEEEEETTT--T-EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEE-----------------------
T ss_pred cEEEEECCC--C-cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcE-----------------------
Confidence 455576654 1 1222455799999999999988 999999999999999876553
Q ss_pred eccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcc
Q 010287 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (513)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (513)
...+.+|. ..|.+++|++.+++.++++++.|++|++||+.++.............
T Consensus 196 ~~~~~~h~------------~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~------------- 250 (464)
T 3v7d_B 196 THVFEGHN------------STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP------------- 250 (464)
T ss_dssp EEEECCCS------------SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSS-------------
T ss_pred EEEECCCC------------CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcc-------------
Confidence 35577888 88999999987788899999999999999998765332211110000
Q ss_pred cccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-c
Q 010287 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D 251 (513)
Q Consensus 173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~ 251 (513)
.....+.+. ........+|...+.++ ++++++++++ .
T Consensus 251 ---~~~~~~~~~-------------------------------------~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~ 288 (464)
T 3v7d_B 251 ---LVFHTPEEN-------------------------------------PYFVGVLRGHMASVRTV--SGHGNIVVSGSY 288 (464)
T ss_dssp ---EEESCGGGC-------------------------------------TTEEEEECCCSSCEEEE--EEETTEEEEEET
T ss_pred ---eEeeccCCC-------------------------------------eEEEEEccCccceEEEE--cCCCCEEEEEeC
Confidence 000001000 00111246788888776 5778899998 7
Q ss_pred CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCC
Q 010287 252 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 331 (513)
Q Consensus 252 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 331 (513)
|+.|++||+++++... .+.+|...|.+++|+|++ ..+++++.||.|++||+++++. +..+
T Consensus 289 d~~i~vwd~~~~~~~~--------~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~----~~~~------- 348 (464)
T 3v7d_B 289 DNTLIVWDVAQMKCLY--------ILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGEL----MYTL------- 348 (464)
T ss_dssp TSCEEEEETTTTEEEE--------EECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEE----EEEE-------
T ss_pred CCeEEEEECCCCcEEE--------EecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcE----EEEE-------
Confidence 9999999998765443 457799999999999998 8999999999999999988765 3333
Q ss_pred CccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC
Q 010287 332 TRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 410 (513)
Q Consensus 332 ~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 410 (513)
.+|...|.+++|+ +.+|++++. +.|++||+.. ........ +... +..++|+|+++
T Consensus 349 -----~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~-~~~~~~~~-~~~~---------------~~~~~~~~~~~ 404 (464)
T 3v7d_B 349 -----QGHTALVGLLRLS--DKFLVSAAADGSIRGWDAND-YSRKFSYH-HTNL---------------SAITTFYVSDN 404 (464)
T ss_dssp -----CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT-CCEEEEEE-CTTC---------------CCEEEEEECSS
T ss_pred -----eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC-Cceeeeec-CCCC---------------ccEEEEEeCCC
Confidence 4455789999997 578888775 9999999986 44333332 2211 23689999999
Q ss_pred EEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 411 RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 411 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
+|++|+ ||.|++||+.+++.....+..|..+|.+++|+ ...++++++.|+.+.+
T Consensus 405 ~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i 458 (464)
T 3v7d_B 405 ILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFL 458 (464)
T ss_dssp EEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred EEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEE
Confidence 999998 89999999998855544567889999999997 4455566667776665
No 96
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=5.6e-32 Score=251.51 Aligned_cols=271 Identities=12% Similarity=0.064 Sum_probs=210.5
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
+.|++++|+| ++.+|++++.|+.|++|++.++.....
T Consensus 12 ~~v~~~~~s~--~~~~l~~~~~d~~v~iw~~~~~~~~~~----------------------------------------- 48 (342)
T 1yfq_A 12 DYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKNVD----------------------------------------- 48 (342)
T ss_dssp SCEEEEEEEG--GGTEEEEEETTSEEEEEEEETTTTEEE-----------------------------------------
T ss_pred CcEEEEEEcC--CCCEEEEEcCCCeEEEEEeCCCCcccc-----------------------------------------
Confidence 8899999976 677999999999999999987541100
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCC-EEEEE-cCCeEEEEEc-CCCcceeee
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNL-EISNQSFNI 269 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~vwd~-~~~~~~~~~ 269 (513)
. ....+|...|.+++|+|+++ +|+++ .||.|++||+ .++.. .
T Consensus 49 ------------------------------~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~-- 93 (342)
T 1yfq_A 49 ------------------------------L--LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-Q-- 93 (342)
T ss_dssp ------------------------------E--EEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-E--
T ss_pred ------------------------------c--eeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-E--
Confidence 0 01247788899999999999 89988 7999999999 75543 1
Q ss_pred cccCcccccc--ccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC---------cccccccceeeccccCCCCcccccc
Q 010287 270 VDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ---------SALCDTHSKLFEEQEAPGTRSFFTE 338 (513)
Q Consensus 270 ~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (513)
.+.+ |...|.+++|+| + .+|++++.|+.|++||+++ ++. +..+ .
T Consensus 94 ------~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~------------~- 148 (342)
T 1yfq_A 94 ------ALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLN----SNNT------------K- 148 (342)
T ss_dssp ------ECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESC----SSSS------------S-
T ss_pred ------eccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCe----eeEE------------e-
Confidence 4566 999999999999 6 8999999999999999986 332 1111 1
Q ss_pred ccccEEEEEEeecCCEEEEEe-CCeEEEEEccC-CCCCeeee-ecccccccccccccccCCccceeeEEEeC-CCCEEEE
Q 010287 339 IIASISDIKFARNGRHILSRD-YMTLKLWDINM-DSGPVATF-QVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVAT 414 (513)
Q Consensus 339 ~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~ 414 (513)
|...+.+++|+|++ +++++ ++.|++||++. ........ ..+... +.+++|+| +++++++
T Consensus 149 ~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---------------i~~i~~~~~~~~~l~~ 211 (342)
T 1yfq_A 149 VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQ---------------IRDVALLPKEQEGYAC 211 (342)
T ss_dssp SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSC---------------EEEEEECSGGGCEEEE
T ss_pred eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCc---------------eeEEEECCCCCCEEEE
Confidence 44789999999987 66655 59999999985 22322222 222222 45899999 9999999
Q ss_pred EeCCCcEEEEecCCC-----CccceeecCCCC---------ceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCc
Q 010287 415 GSYSNLFRVFGCSEG-----SAESTTLEASKN---------PMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGN 480 (513)
Q Consensus 415 ~~~dg~i~vwd~~~~-----~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~ 480 (513)
++.||.|++|++... ......+..|.. ++.+++|+|++++|++++.||.|++ |+.........
T Consensus 212 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v---wd~~~~~~~~~ 288 (342)
T 1yfq_A 212 SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISC---WNLQTRKKIKN 288 (342)
T ss_dssp EETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEE---EETTTTEEEEE
T ss_pred EecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEE---EcCccHhHhhh
Confidence 999999999999876 355577777755 9999999999999999999999999 43332223333
Q ss_pred cccc-cCCeeEEEEeCCCCEEEEEcCCcE
Q 010287 481 AFDF-SMKLLHLAWHPSENSIACAASNSL 508 (513)
Q Consensus 481 ~~~~-~~~i~~~~~sp~~~~la~~~~~~~ 508 (513)
...| ...|.+++ |++++|++++.|+.
T Consensus 289 ~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 289 FAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp CCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred hhcccCCCceEec--CCCCeEEEEecCCc
Confidence 4456 89999999 99999999886653
No 97
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=8.5e-32 Score=257.25 Aligned_cols=248 Identities=19% Similarity=0.323 Sum_probs=202.9
Q ss_pred cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
..+|.+.|+||+|+|+|++||+|+.||.|+|||+.+++. ...+.+|.
T Consensus 143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~-----------------------~~~~~~h~---------- 189 (420)
T 4gga_A 143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-----------------------LRNMTSHS---------- 189 (420)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----------------------EEEECCCS----------
T ss_pred ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE-----------------------EEEEeCCC----------
Confidence 346888999999999999999999999999999876653 35677888
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
..|.++.| ++..+++++.|+.+++||........
T Consensus 190 --~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~---------------------------------------- 223 (420)
T 4gga_A 190 --ARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHV---------------------------------------- 223 (420)
T ss_dssp --SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEE----------------------------------------
T ss_pred --CceEEEee----CCCEEEEEeCCCceeEeeecccceee----------------------------------------
Confidence 78999888 34689999999999999987643111
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 269 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~ 269 (513)
..+.+|...+..+.|+|++++++++ .|+.+++|+..+++.....
T Consensus 224 -----------------------------------~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~ 268 (420)
T 4gga_A 224 -----------------------------------ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 268 (420)
T ss_dssp -----------------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC
T ss_pred -----------------------------------EEecccccceeeeeecCCCCeeeeeeccccceEEeecccccccee
Confidence 0135788889999999999999998 7999999999876543221
Q ss_pred cccCccccccccCCeEEEEEeCCCCeEEEEE--eCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287 270 VDVKPANMEDLTEVITSAEFHPTHCNMLAYS--SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 347 (513)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 347 (513)
. .....|...|.+++|+|.+..+++++ +.|+.|++||++++.. ...+..+ ..+.++.
T Consensus 269 ~----~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~----~~~~~~~-------------~~v~~~~ 327 (420)
T 4gga_A 269 L----QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC----LSAVDAH-------------SQVCSIL 327 (420)
T ss_dssp S----EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE----EEEEECS-------------SCEEEEE
T ss_pred e----eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc----ceeeccc-------------cceeeee
Confidence 1 24467889999999999887777764 4799999999998875 2233222 4689999
Q ss_pred EeecCCEEEEEe---CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEE
Q 010287 348 FARNGRHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 424 (513)
Q Consensus 348 ~sp~~~~l~~~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 424 (513)
|+|++..+++++ ++.|+|||+.+ ++++..+.+|... |++++|+|||++|++|+.|++|+||
T Consensus 328 ~~~~~~~lv~~sg~~d~~I~iwd~~~-~~~v~~l~gH~~~---------------V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 328 WSPHYKELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSR---------------VLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp EETTTTEEEEEECTTTCCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECTTSSCEEEEETTTEEEEE
T ss_pred ecCCCCeEEEEEecCCCEEEEEECCC-CcEEEEEcCCCCC---------------EEEEEEcCCCCEEEEEecCCeEEEE
Confidence 999999888753 49999999997 8999999999876 5699999999999999999999999
Q ss_pred ecCCC
Q 010287 425 GCSEG 429 (513)
Q Consensus 425 d~~~~ 429 (513)
|+...
T Consensus 392 dv~~~ 396 (420)
T 4gga_A 392 RCFEL 396 (420)
T ss_dssp CCSCS
T ss_pred ECCCC
Confidence 99765
No 98
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-32 Score=251.59 Aligned_cols=280 Identities=13% Similarity=0.064 Sum_probs=203.3
Q ss_pred EEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEE
Q 010287 41 IEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120 (513)
Q Consensus 41 v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~ 120 (513)
..+.+++.+|++|+.||.|++||+.+++.. ..+. . ..|.++.|
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~-----------------------~~~~--~------------~~v~~~~~ 84 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTI-----------------------TTIT--T------------PNPRTGGE 84 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCE-----------------------EEEE--E------------ECCCTTCC
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEE-----------------------EEEe--c------------CCceeeee
Confidence 345567899999999999999999876642 1111 1 56888888
Q ss_pred eecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcC
Q 010287 121 CQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFP 200 (513)
Q Consensus 121 ~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 200 (513)
+| + +++++.|++|++|+......
T Consensus 85 ~~--~---~~s~s~D~~i~~w~~~~~~~---------------------------------------------------- 107 (343)
T 3lrv_A 85 HP--A---IISRGPCNRLLLLYPGNQIT---------------------------------------------------- 107 (343)
T ss_dssp CC--S---EEEECSTTEEEEEETTTEEE----------------------------------------------------
T ss_pred CC--c---eEEecCCCeEEEEEccCceE----------------------------------------------------
Confidence 66 3 99999999999999876321
Q ss_pred CCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc--CCCEEEEE-cCCeEEEEEcCCCcceeeecccCcccc
Q 010287 201 PGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 277 (513)
Q Consensus 201 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~ 277 (513)
+|++... ...+....+|...|.+++|+| ++++|+++ .|++|++||+++++.. .. ..
T Consensus 108 --------~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~------~~ 166 (343)
T 3lrv_A 108 --------ILDSKTN------KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQY-IV------HS 166 (343)
T ss_dssp --------EEETTTC------CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEE-EE------EC
T ss_pred --------EeecCCc------ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEE-EE------Ee
Confidence 1111111 111222346778899999999 99999998 7999999999976653 21 11
Q ss_pred ccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEE
Q 010287 278 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 357 (513)
Q Consensus 278 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~ 357 (513)
..+...+.+++|+|++ .+|++|+.||.|++||++++.... ..+.. +|.+.|.+++|+|++.+|++
T Consensus 167 ~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~~~~---~~~~~-----------~h~~~v~~l~fs~~g~~l~s 231 (343)
T 3lrv_A 167 AKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLSSPDQAS---SRFPV-----------DEEAKIKEVKFADNGYWMVV 231 (343)
T ss_dssp CCSSCCCCEEEECTTS-CEEEEECTTSCEEEEESSCTTSCC---EECCC-----------CTTSCEEEEEECTTSSEEEE
T ss_pred cCCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCCCCc---cEEec-----------cCCCCEEEEEEeCCCCEEEE
Confidence 3355679999999998 999999999999999999876520 22222 26689999999999999999
Q ss_pred EeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC-CCcEEEEecCCCCccceee
Q 010287 358 RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGCSEGSAESTTL 436 (513)
Q Consensus 358 ~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~ 436 (513)
++++.|++||++. .+.+..+.........+. -.+++|+|++++|++++. |+.|++|++....+....
T Consensus 232 ~~~~~v~iwd~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~- 299 (343)
T 3lrv_A 232 ECDQTVVCFDLRK-DVGTLAYPTYTIPEFKTG----------TVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK- 299 (343)
T ss_dssp EESSBEEEEETTS-STTCBSSCCCBC-----C----------CEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-
T ss_pred EeCCeEEEEEcCC-CCcceeeccccccccccc----------ceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-
Confidence 8888999999996 555544443211100000 025999999999999998 999999999765333221
Q ss_pred cCCCCceeEEEEcC---CCCceeeecCCCeEEE
Q 010287 437 EASKNPMRRQVQTP---SRPSRPLGSLSGVVRR 466 (513)
Q Consensus 437 ~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~ 466 (513)
.++..+.|.+ +.+.+++++.|+.+.+
T Consensus 300 ----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 328 (343)
T 3lrv_A 300 ----DEESALCLQSDTADFTDMDVVCGDGGIAA 328 (343)
T ss_dssp ----EEEEECCC----CCCCEEEEEEETTEEEE
T ss_pred ----cCceeEecCccccccceeEEEecCCceEE
Confidence 5677788888 8889999999999888
No 99
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=8.4e-32 Score=255.97 Aligned_cols=288 Identities=15% Similarity=0.188 Sum_probs=213.5
Q ss_pred cEEEEEEcCCCC-EEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287 37 IISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (513)
Q Consensus 37 ~V~~v~~sp~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 115 (513)
....++++|+.. ++++|+.||.|+||++...... ......+.+|. +.|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-------------------~~~~~~~~~h~------------~~V 84 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-------------------DKNVPLVCGHT------------APV 84 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-------------------CTTCCCBCCCS------------SCE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-------------------CCCCceEecCC------------CCE
Confidence 345688888864 4456889999999997543221 00113467888 889
Q ss_pred eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCC
Q 010287 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (513)
Q Consensus 116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 195 (513)
++++|+|. ++.+|++++.||+|++||+.++.......
T Consensus 85 ~~~~~~p~-~~~~l~s~s~dg~v~vw~~~~~~~~~~~~------------------------------------------ 121 (402)
T 2aq5_A 85 LDIAWCPH-NDNVIASGSEDCTVMVWEIPDGGLVLPLR------------------------------------------ 121 (402)
T ss_dssp EEEEECTT-CTTEEEEEETTSEEEEEECCTTCCSSCBC------------------------------------------
T ss_pred EEEEeCCC-CCCEEEEEeCCCeEEEEEccCCCCccccC------------------------------------------
Confidence 99999652 56799999999999999998764221000
Q ss_pred CCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC-CEEEEE-cCCeEEEEEcCCCcceeeecccC
Q 010287 196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVK 273 (513)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~ 273 (513)
.+. ..+.+|...|.+++|+|++ .+|+++ .|+.|++||+++++...
T Consensus 122 --------------------------~~~-~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~------ 168 (402)
T 2aq5_A 122 --------------------------EPV-ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVL------ 168 (402)
T ss_dssp --------------------------SCS-EEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEE------
T ss_pred --------------------------Cce-EEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccE------
Confidence 000 1146889999999999998 688888 79999999999765443
Q ss_pred cccc--ccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccc-cEEEEEEee
Q 010287 274 PANM--EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA-SISDIKFAR 350 (513)
Q Consensus 274 ~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~sp 350 (513)
.+ ..|...|.+++|+|++ .+|++++.||.|++||+++++. +..+. ..|.+ .+.++.|+|
T Consensus 169 --~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~ 230 (402)
T 2aq5_A 169 --TLGPDVHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTV----VAEKD-----------RPHEGTRPVHAVFVS 230 (402)
T ss_dssp --EECTTTCCSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEE----EEEEE-----------CSSCSSSCCEEEECS
T ss_pred --EEecCCCCCceEEEEECCCC-CEEEEEecCCcEEEEeCCCCce----eeeec-----------cCCCCCcceEEEEcC
Confidence 33 6789999999999998 8999999999999999998765 33331 12223 388999999
Q ss_pred cCCEEEEE---e-CCeEEEEEccCCCCCeeeeec-ccccccccccccccCCccceeeEEEeCCCCEEE-EEeCCCcEEEE
Q 010287 351 NGRHILSR---D-YMTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVF 424 (513)
Q Consensus 351 ~~~~l~~~---~-~~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vw 424 (513)
++++|++| + ++.|++||++....++..... +... +..++|+|++++|+ +|+.||.|++|
T Consensus 231 ~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~~g~~dg~i~i~ 295 (402)
T 2aq5_A 231 EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSG---------------VLLPFFDPDTNIVYLCGKGDSSIRYF 295 (402)
T ss_dssp TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSS---------------CEEEEEETTTTEEEEEETTCSCEEEE
T ss_pred CCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCc---------------eeEEEEcCCCCEEEEEEcCCCeEEEE
Confidence 99999998 4 599999999863333433331 2221 45899999999997 45579999999
Q ss_pred ecCCCCccceeecC--CCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 425 GCSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 425 d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
|+.++......+.. |..++..++|+|++.+++++ ++.+++
T Consensus 296 d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~--~~~~~~ 337 (402)
T 2aq5_A 296 EITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK--CEIARF 337 (402)
T ss_dssp EECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG--TEEEEE
T ss_pred EecCCCcceEeecccccCCcccceEEecccccceec--ceeEEE
Confidence 99987542344443 55899999999999998875 557776
No 100
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.4e-31 Score=255.20 Aligned_cols=308 Identities=13% Similarity=0.182 Sum_probs=214.1
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
+.|++++|+|. ++.+|++++.||.|++||+.++............ .
T Consensus 44 ~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~----------------------~----------- 89 (408)
T 4a11_B 44 GGINTLDIEPV-EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVC----------------------S----------- 89 (408)
T ss_dssp SCEEEEEECTT-TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEE----------------------E-----------
T ss_pred CcEEEEEEecC-CCCEEEEEcCCCeEEEEECCCCcccceEeccccc----------------------c-----------
Confidence 89999999541 6679999999999999999886543321110000 0
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEEEEE-cCCeEEEEEcCCCcceeeec
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIV 270 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~~~~~~~ 270 (513)
.......+|...|.+++|+| ++++|+++ .|+.|++||+.+++....
T Consensus 90 ------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-- 137 (408)
T 4a11_B 90 ------------------------------IGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADV-- 137 (408)
T ss_dssp ------------------------------ECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEE--
T ss_pred ------------------------------ccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcccee--
Confidence 00000246888999999999 77788888 699999999997654422
Q ss_pred ccCccccccccCCeEEEEEeCCCC--eEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE
Q 010287 271 DVKPANMEDLTEVITSAEFHPTHC--NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 348 (513)
Q Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 348 (513)
..+...+.++.++|.+. .++++++.|+.|++||++++.. ... +.+|...|.+++|
T Consensus 138 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~----~~~------------~~~~~~~v~~~~~ 194 (408)
T 4a11_B 138 -------FNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC----SHI------------LQGHRQEILAVSW 194 (408)
T ss_dssp -------EECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC----CEE------------ECCCCSCEEEEEE
T ss_pred -------ccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce----eee------------ecCCCCcEEEEEE
Confidence 23677899999998542 4999999999999999988764 222 3445678999999
Q ss_pred eecCCE-EEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEec
Q 010287 349 ARNGRH-ILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 426 (513)
Q Consensus 349 sp~~~~-l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 426 (513)
+|++.+ +++++. +.|++||++.....+..+..+...............-..|.+++|+|++++|++++.||.|++||+
T Consensus 195 ~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 274 (408)
T 4a11_B 195 SPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNS 274 (408)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 999984 777765 999999998744455555433321111100000111123669999999999999999999999999
Q ss_pred CCCCccceee----cCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEE
Q 010287 427 SEGSAESTTL----EASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIAC 502 (513)
Q Consensus 427 ~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~ 502 (513)
.++....... ..................+++++.|+.|++ ++............|...|++++|+|++++|++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v---~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 351 (408)
T 4a11_B 275 SNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAV---YTVYSGEQITMLKGHYKTVDCCVFQSNFQELYS 351 (408)
T ss_dssp TTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEE---EETTTCCEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred CCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEE---EECcCCcceeeeccCCCeEEEEEEcCCCCEEEE
Confidence 9874432111 111222223333455667777788999999 333222233344468999999999999999998
Q ss_pred Ec-CCcEEEEe
Q 010287 503 AA-SNSLYMYY 512 (513)
Q Consensus 503 ~~-~~~~~i~~ 512 (513)
++ ++.+.+|+
T Consensus 352 ~~~dg~i~iw~ 362 (408)
T 4a11_B 352 GSRDCNILAWV 362 (408)
T ss_dssp EETTSCEEEEE
T ss_pred ECCCCeEEEEe
Confidence 87 66788886
No 101
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=9.3e-31 Score=252.28 Aligned_cols=284 Identities=15% Similarity=0.225 Sum_probs=222.2
Q ss_pred ccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceE
Q 010287 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (513)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (513)
....|++.. ++ ......+|.+.|++++|+ +.+|++|+.||.|++||+.+++.
T Consensus 140 ~i~vwd~~~--~~-~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~----------------------- 191 (445)
T 2ovr_B 140 TLKVWSAVT--GK-CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGEC----------------------- 191 (445)
T ss_dssp CEEEEETTT--CC-EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEE-----------------------
T ss_pred cEEEEECCC--Cc-EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcE-----------------------
Confidence 345576654 11 222455799999999998 56999999999999999876653
Q ss_pred eccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcc
Q 010287 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (513)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (513)
...+.+|. ..|.+++|. +..+++++.||+|++||+.+++....
T Consensus 192 ~~~~~~h~------------~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~--------------------- 234 (445)
T 2ovr_B 192 IHTLYGHT------------STVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHV--------------------- 234 (445)
T ss_dssp EEEECCCS------------SCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEE---------------------
T ss_pred EEEECCCC------------CcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEE---------------------
Confidence 35567888 889999993 35899999999999999987754332
Q ss_pred cccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-c
Q 010287 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D 251 (513)
Q Consensus 173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~ 251 (513)
+.+|...|.+++| ++++++++ .
T Consensus 235 -------------------------------------------------------~~~~~~~v~~~~~--~~~~l~~~~~ 257 (445)
T 2ovr_B 235 -------------------------------------------------------LMGHVAAVRCVQY--DGRRVVSGAY 257 (445)
T ss_dssp -------------------------------------------------------EECCSSCEEEEEE--CSSCEEEEET
T ss_pred -------------------------------------------------------EcCCcccEEEEEE--CCCEEEEEcC
Confidence 2467788999998 67888888 7
Q ss_pred CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCC
Q 010287 252 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 331 (513)
Q Consensus 252 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 331 (513)
|+.|++||+++++... .+.+|...|.++.| ++ ..+++++.|+.|++||+++++. ...+
T Consensus 258 dg~i~iwd~~~~~~~~--------~~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~----~~~~------- 315 (445)
T 2ovr_B 258 DFMVKVWDPETETCLH--------TLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNC----IHTL------- 315 (445)
T ss_dssp TSCEEEEEGGGTEEEE--------EECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCE----EEEE-------
T ss_pred CCEEEEEECCCCcEeE--------EecCCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCE----EEEE-------
Confidence 9999999998765443 45678999999999 55 7899999999999999998765 3333
Q ss_pred CccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC
Q 010287 332 TRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 410 (513)
Q Consensus 332 ~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 410 (513)
.+|...+.++.+ ++.++++++. +.|++||+++ ++.+..+..+..... .|++++|+ ++
T Consensus 316 -----~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~------------~v~~~~~~--~~ 373 (445)
T 2ovr_B 316 -----TGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKT-GQCLQTLQGPNKHQS------------AVTCLQFN--KN 373 (445)
T ss_dssp -----CCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTT-CCEEEEECSTTSCSS------------CEEEEEEC--SS
T ss_pred -----cCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCC-CcEEEEEccCCCCCC------------CEEEEEEC--CC
Confidence 334467877766 5678888775 9999999986 777877776322111 14577775 67
Q ss_pred EEEEEeCCCcEEEEecCCCCccceee-----cCCCCceeEEEEcCCCCceeeecCCCe
Q 010287 411 RVATGSYSNLFRVFGCSEGSAESTTL-----EASKNPMRRQVQTPSRPSRPLGSLSGV 463 (513)
Q Consensus 411 ~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~ 463 (513)
+|++|+.||.|++||+.+++.. ..+ ..+..++.+++|+|++.++++|+.||.
T Consensus 374 ~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 374 FVITSSDDGTVKLWDLKTGEFI-RNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 430 (445)
T ss_dssp EEEEEETTSEEEEEETTTCCEE-EEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred EEEEEeCCCeEEEEECCCCcee-eeeeccccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence 9999999999999999988443 444 477889999999999999999999997
No 102
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.7e-30 Score=243.95 Aligned_cols=282 Identities=11% Similarity=0.126 Sum_probs=210.1
Q ss_pred EeccccCCCCcccccccccccccceeEEEeecC-CCceEEEeecCCeEEEEEccC-ceeeeeeccccCCCcccCCCCccc
Q 010287 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFG 169 (513)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~-~~~~l~s~s~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 169 (513)
....+.+|. +.|++++|+|.. ++.+|++++.||.|++||+.+ +....
T Consensus 31 ~~~~~~~h~------------~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~------------------- 79 (368)
T 3mmy_A 31 DIEVTSSPD------------DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP------------------- 79 (368)
T ss_dssp CEECSSCCS------------SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE-------------------
T ss_pred eeEeccCCC------------CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE-------------------
Confidence 334578888 889999997631 158999999999999999986 32110
Q ss_pred CcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEE
Q 010287 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 249 (513)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 249 (513)
..+.+|...|.+++|+|++++|++
T Consensus 80 --------------------------------------------------------~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 80 --------------------------------------------------------KAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp --------------------------------------------------------EEEEECSSCEEEEEECTTSSEEEE
T ss_pred --------------------------------------------------------EEeccccCCEEEEEECcCCCEEEE
Confidence 113578889999999999999999
Q ss_pred E-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEE--eCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecc
Q 010287 250 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF--HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 326 (513)
Q Consensus 250 ~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 326 (513)
+ .|+.|++||++++... .+..|...|.+++| +|++ .+|++++.||.|++||+++++. +..+..
T Consensus 104 ~~~dg~v~iwd~~~~~~~---------~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~----~~~~~~ 169 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSNQAI---------QIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNP----MMVLQL 169 (368)
T ss_dssp EETTSEEEEEETTTTEEE---------EEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSC----SEEEEC
T ss_pred EcCCCcEEEEEcCCCCce---------eeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcE----EEEEec
Confidence 8 7999999999866533 34568999999999 8888 8999999999999999998765 333333
Q ss_pred ccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEE
Q 010287 327 QEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 405 (513)
Q Consensus 327 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (513)
+ ..+.++.+. ...++++. ++.+.+|+++............... .+..+.+
T Consensus 170 ~-------------~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 220 (368)
T 3mmy_A 170 P-------------ERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKH--------------QHRCVAI 220 (368)
T ss_dssp S-------------SCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSS--------------CEEEEEE
T ss_pred C-------------CCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccC--------------CCceEEE
Confidence 2 245666655 44666655 5999999998632222222211111 0225556
Q ss_pred eCCCCE----EEEEeCCCcEEEEecCCCCc--cceeecCCCC------------ceeEEEEcCCCCceeeecCCCeEEEe
Q 010287 406 SGDGGR----VATGSYSNLFRVFGCSEGSA--ESTTLEASKN------------PMRRQVQTPSRPSRPLGSLSGVVRRV 467 (513)
Q Consensus 406 s~~~~~----l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~d~~i~~~ 467 (513)
.++... +++++.||.|++|++..... ....+..|.. ++.+++|+|++++|++++.||.|++
T Consensus 221 ~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~i- 299 (368)
T 3mmy_A 221 FKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF- 299 (368)
T ss_dssp EECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEE-
T ss_pred cccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEE-
Confidence 555544 99999999999999987642 3356677765 7999999999999999999999999
Q ss_pred cCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCC
Q 010287 468 KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN 506 (513)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~ 506 (513)
|+............|...|++++|+|++++||+++.+
T Consensus 300 --wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 300 --WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp --EETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred --EECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecc
Confidence 4433223333444688999999999999999988754
No 103
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=4.3e-31 Score=246.07 Aligned_cols=304 Identities=14% Similarity=0.119 Sum_probs=194.2
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
+.|++++|+| ++.+|++++.||.|++||+.++.....
T Consensus 12 ~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~----------------------------------------- 48 (351)
T 3f3f_A 12 DLVHDVVYDF--YGRHVATCSSDQHIKVFKLDKDTSNWE----------------------------------------- 48 (351)
T ss_dssp SCEEEEEECS--SSSEEEEEETTSEEEEEEECSSSCCEE-----------------------------------------
T ss_pred cceeEEEEcC--CCCEEEEeeCCCeEEEEECCCCCCcce-----------------------------------------
Confidence 8999999965 778999999999999999986532110
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc--CCCEEEEE-cCCeEEEEEcCCCcceeee
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNI 269 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~-~d~~i~vwd~~~~~~~~~~ 269 (513)
. ...+.+|...|.+++|+| ++++|+++ .|+.|++||++++......
T Consensus 49 ------------------------------~-~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~ 97 (351)
T 3f3f_A 49 ------------------------------L-SDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG 97 (351)
T ss_dssp ------------------------------E-EEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSS
T ss_pred ------------------------------e-cceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccc
Confidence 0 011357889999999999 58999998 7999999999876421100
Q ss_pred cccC-ccccccccCCeEEEEEeCC--CCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCC-CCccccccccccEEE
Q 010287 270 VDVK-PANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP-GTRSFFTEIIASISD 345 (513)
Q Consensus 270 ~~~~-~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~ 345 (513)
...+ ...+..|...|.+++|+|+ + .+|++++.||.|++||+++++.... +...... ........|...+.+
T Consensus 98 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 172 (351)
T 3f3f_A 98 RRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRS----WTLTSEMKVLSIPPANHLQSDFC 172 (351)
T ss_dssp CSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTC----CEEEEEEESCSCCCSSCSCCCEE
T ss_pred cCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhcc----ccccccccccccccCCcccceeE
Confidence 0000 0245678999999999999 7 8999999999999999998765322 1110000 000112356688999
Q ss_pred EEEeec---CCEEEEEeC-CeEEEEEccCCCCC--eeeeecccccccccccccccCCccceeeEEEeCCC----CEEEEE
Q 010287 346 IKFARN---GRHILSRDY-MTLKLWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG----GRVATG 415 (513)
Q Consensus 346 i~~sp~---~~~l~~~~~-~~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~ 415 (513)
++|+|+ +.++++++. +.+.+|+... +.. +..+.+|... |++++|+|++ ++|+++
T Consensus 173 ~~~~p~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~---------------i~~~~~~p~~~~~~~~l~s~ 236 (351)
T 3f3f_A 173 LSWCPSRFSPEKLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSL---------------IRSISWAPSIGRWYQLIATG 236 (351)
T ss_dssp EEECCCSSSCCEEEEEETTEEEEEEECTT-SCEEEEEECCCCCSC---------------EEEEEECCCSSCSSEEEEEE
T ss_pred EEeccCCCCCcEEEEecCCCcEEEEccCC-CceeeeeecCCCCcc---------------eeEEEECCCCCCcceEEEEE
Confidence 999997 889998876 7776666654 443 4555556544 5699999998 899999
Q ss_pred eCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE-ecCCCCCccccCCccccccCCeeEEEEe
Q 010287 416 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLAWH 494 (513)
Q Consensus 416 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s 494 (513)
+.||.|++||+..+... .....+..........+....++.+..++.... ...+.............|...|++++|+
T Consensus 237 ~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 315 (351)
T 3f3f_A 237 CKDGRIRIFKITEKLSP-LASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN 315 (351)
T ss_dssp ETTSCEEEEEEEECC----------------------------------------CCSEEEEEEEEECTTSSCEEEEEEC
T ss_pred cCCCeEEEEeCCCCcCc-cccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEc
Confidence 99999999999876332 222233333334444444444444443333222 1112211112223344588999999999
Q ss_pred CCCCEEEEEc-CCcEEEEe
Q 010287 495 PSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 495 p~~~~la~~~-~~~~~i~~ 512 (513)
|++++||+++ ++.+++|.
T Consensus 316 ~~~~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 316 LTGTILSSAGDDGKVRLWK 334 (351)
T ss_dssp SSSCCEEEEETTSCEEEEE
T ss_pred CCCCEEEEecCCCcEEEEe
Confidence 9999999888 66699986
No 104
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=5.8e-31 Score=248.68 Aligned_cols=229 Identities=14% Similarity=0.132 Sum_probs=150.4
Q ss_pred eccccCCeEEEEecc--------CCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEE
Q 010287 228 AHAHDYHINSISNNS--------DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA 298 (513)
Q Consensus 228 ~~~h~~~v~~~~~~~--------~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 298 (513)
+.+|.+.|.+++|+| ++++|+++ .|++|++||++++.... .+..|...+.+++|+|++..+|+
T Consensus 132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~--------~~~~~~~~v~~v~~~p~~~~~l~ 203 (393)
T 4gq1_A 132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL--------AGYPLSSPGISVQFRPSNPNQLI 203 (393)
T ss_dssp TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE--------EEEECSSCEEEEEEETTEEEEEE
T ss_pred cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee--------eecCCCCCcEEEEECCCCCceEE
Confidence 368999999999997 78899998 79999999998766544 34568889999999999866899
Q ss_pred EEeCCCcEEEEEcCCcccccccceeecccc---------CCCCccccccccccEEEEEEe-ecCCEEEEEeC-CeEEEEE
Q 010287 299 YSSSKGSIRLIDMRQSALCDTHSKLFEEQE---------APGTRSFFTEIIASISDIKFA-RNGRHILSRDY-MTLKLWD 367 (513)
Q Consensus 299 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~v~~i~~s-p~~~~l~~~~~-~~v~iwd 367 (513)
+++.|+.|++||+++++............. .........+|...+.++.|+ |+++.|++++. +.+++||
T Consensus 204 ~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd 283 (393)
T 4gq1_A 204 VGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWN 283 (393)
T ss_dssp EEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEE
T ss_pred ecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEE
Confidence 999999999999998765322111100000 000111235677889999998 69999999875 9999999
Q ss_pred ccCCCCCeeeeeccccccccccccc---ccCCccceeeEEEeC--CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCc
Q 010287 368 INMDSGPVATFQVHEHLRPKLCDLY---ENDSIFDKFECCLSG--DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNP 442 (513)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 442 (513)
+.. ++....+..+........... ............|+| ++.++++|+.||.|++||+.++. ....+..|..+
T Consensus 284 ~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~-~~~~~~~~~~~ 361 (393)
T 4gq1_A 284 LFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD-SNSIPIQLGMP 361 (393)
T ss_dssp C--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT-CCEEEEECSSC
T ss_pred Ccc-CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc-EEEEecCCCCc
Confidence 986 555555544433221111000 000000111344554 34467788899999999999874 44566778889
Q ss_pred eeEEEEcCCCCceeeecCCCeEEE
Q 010287 443 MRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 443 v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
|.+++|+|+|++||+++.+|.+.+
T Consensus 362 V~svafspdG~~LA~as~~Gv~lv 385 (393)
T 4gq1_A 362 IVDFCWHQDGSHLAIATEGSVLLT 385 (393)
T ss_dssp EEEEEECTTSSEEEEEESSEEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEE
Confidence 999999999999999998887554
No 105
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-30 Score=247.11 Aligned_cols=248 Identities=14% Similarity=0.103 Sum_probs=183.2
Q ss_pred ccceeEEEeecCCCceE-EEeecCCeEEEEEcc--CceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 113 EKINKIRWCQSANSALY-LLSTNDKTIKLWKVQ--EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l-~s~s~d~~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
+.|.+++|+| ++.+| ++++.||.|++||+. +++......
T Consensus 103 ~~v~~~~~s~--d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~------------------------------------ 144 (450)
T 2vdu_B 103 SYIRNLRLTS--DESRLIACADSDKSLLVFDVDKTSKNVLKLRK------------------------------------ 144 (450)
T ss_dssp CCEEEEEECT--TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE------------------------------------
T ss_pred CceEEEEEcC--CCCEEEEEECCCCeEEEEECcCCCCceeeeee------------------------------------
Confidence 5799999955 77786 888899999999998 554332211
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 268 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~ 268 (513)
...|...|.+++|+|++++|+++ .++.|++|++.+......
T Consensus 145 --------------------------------------~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~ 186 (450)
T 2vdu_B 145 --------------------------------------RFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKF 186 (450)
T ss_dssp --------------------------------------EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSC
T ss_pred --------------------------------------cccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccc
Confidence 12456779999999999999998 699999999986653320
Q ss_pred ecccCccccccccCCeEEEEEeCC---CCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 345 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 345 (513)
. ...+.+|...|++++|+|+ + .+|++++.|+.|++||++++... .. ++.+|...|.+
T Consensus 187 ~----~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~----~~-----------~~~~h~~~v~~ 246 (450)
T 2vdu_B 187 T----QEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIV----DK-----------WLFGHKHFVSS 246 (450)
T ss_dssp C----CCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCE----EE-----------ECCCCSSCEEE
T ss_pred c----ceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCcee----ee-----------eecCCCCceEE
Confidence 0 0145779999999999999 7 89999999999999999877642 11 12356689999
Q ss_pred EEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccc-----------cCCccceeeEEEeCCCCEEE
Q 010287 346 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE-----------NDSIFDKFECCLSGDGGRVA 413 (513)
Q Consensus 346 i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~s~~~~~l~ 413 (513)
++|+ ++++|++++. +.|++||+.+ ++.+..+..+..... +....+ ...-..+..++|+|++++|+
T Consensus 247 ~~~s-d~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 323 (450)
T 2vdu_B 247 ICCG-KDYLLLSAGGDDKIFAWDWKT-GKNLSTFDYNSLIKP-YLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVA 323 (450)
T ss_dssp EEEC-STTEEEEEESSSEEEEEETTT-CCEEEEEECHHHHGG-GCCTTSBC----------CBCCCEEEEEECSSSSEEE
T ss_pred EEEC-CCCEEEEEeCCCeEEEEECCC-CcEeeeecchhhhhh-hhhhcccccccccccccccceEEEEEEEEeCCCCEEE
Confidence 9999 9999999875 9999999996 777777764431100 000000 01112366899999999999
Q ss_pred EEe-CCCcEEEEec--CCCC--ccceeecCCCCceeEEEEcCCCCceeeecC
Q 010287 414 TGS-YSNLFRVFGC--SEGS--AESTTLEASKNPMRRQVQTPSRPSRPLGSL 460 (513)
Q Consensus 414 ~~~-~dg~i~vwd~--~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 460 (513)
+++ .|+.|++|++ .++. .....+..+ ..+.+++|+|++.+++.++.
T Consensus 324 ~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~ 374 (450)
T 2vdu_B 324 FFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNK 374 (450)
T ss_dssp EEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCT
T ss_pred EEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecc
Confidence 998 8999999999 4332 233566677 78999999996545554443
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.9e-30 Score=243.51 Aligned_cols=249 Identities=16% Similarity=0.175 Sum_probs=197.6
Q ss_pred ccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCccc
Q 010287 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (513)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (513)
..+.+|. +.|++++|+| ++.+|++++.||.|++||+.........
T Consensus 5 ~~~~~h~------------~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~--------------------- 49 (379)
T 3jrp_A 5 VIANAHN------------ELIHDAVLDY--YGKRLATCSSDKTIKIFEVEGETHKLID--------------------- 49 (379)
T ss_dssp CCEEECC------------CCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEE---------------------
T ss_pred EEecCCc------------ccEEEEEEcC--CCCEEEEEECCCcEEEEecCCCcceeee---------------------
Confidence 4577888 8999999965 7789999999999999999844322111
Q ss_pred ccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC--CCEEEEE-
Q 010287 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA- 250 (513)
Q Consensus 174 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~- 250 (513)
.+.+|...|.+++|+++ +++|+++
T Consensus 50 -----------------------------------------------------~~~~h~~~v~~~~~~~~~~~~~l~s~~ 76 (379)
T 3jrp_A 50 -----------------------------------------------------TLTGHEGPVWRVDWAHPKFGTILASCS 76 (379)
T ss_dssp -----------------------------------------------------EECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred -----------------------------------------------------EecCCCCcEEEEEeCCCCCCCEEEEec
Confidence 13578889999999977 8999998
Q ss_pred cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCC--CCeEEEEEeCCCcEEEEEcCCcccccccceeecccc
Q 010287 251 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 328 (513)
Q Consensus 251 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 328 (513)
.|+.|++||+++++.... ..+..|...|.+++|+|+ + .+|++++.|+.|++||++++.... ...
T Consensus 77 ~dg~v~iwd~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~--~~~----- 142 (379)
T 3jrp_A 77 YDGKVLIWKEENGRWSQI------AVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTS--PII----- 142 (379)
T ss_dssp TTSCEEEEEEETTEEEEE------EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCC--EEE-----
T ss_pred cCCEEEEEEcCCCceeEe------eeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCcee--eEE-----
Confidence 799999999987642111 145678999999999999 7 899999999999999998764311 111
Q ss_pred CCCCccccccccccEEEEEEee-------------cCCEEEEEeC-CeEEEEEccCCCC---Ceeeeecccccccccccc
Q 010287 329 APGTRSFFTEIIASISDIKFAR-------------NGRHILSRDY-MTLKLWDINMDSG---PVATFQVHEHLRPKLCDL 391 (513)
Q Consensus 329 ~~~~~~~~~~~~~~v~~i~~sp-------------~~~~l~~~~~-~~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~ 391 (513)
+.+|...|.+++|+| ++.++++++. +.|++||++.... ....+..|...
T Consensus 143 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~------- 208 (379)
T 3jrp_A 143 -------IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW------- 208 (379)
T ss_dssp -------EECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC-------
T ss_pred -------ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCc-------
Confidence 345667899999999 6899999875 9999999986222 22345555544
Q ss_pred cccCCccceeeEEEeCC---CCEEEEEeCCCcEEEEecCCCCcc----ceeecCCCCceeEEEEcCCCCceeeecCCCeE
Q 010287 392 YENDSIFDKFECCLSGD---GGRVATGSYSNLFRVFGCSEGSAE----STTLEASKNPMRRQVQTPSRPSRPLGSLSGVV 464 (513)
Q Consensus 392 ~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 464 (513)
|.+++|+|+ +++|++++.||.|++||+.++... ......|...+.+++|+|++++|++++.||.|
T Consensus 209 --------v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i 280 (379)
T 3jrp_A 209 --------VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV 280 (379)
T ss_dssp --------EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSE
T ss_pred --------EeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcE
Confidence 559999999 899999999999999999976322 12333488899999999999999999999999
Q ss_pred EE
Q 010287 465 RR 466 (513)
Q Consensus 465 ~~ 466 (513)
++
T Consensus 281 ~i 282 (379)
T 3jrp_A 281 TL 282 (379)
T ss_dssp EE
T ss_pred EE
Confidence 99
No 107
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.98 E-value=6.3e-30 Score=238.08 Aligned_cols=288 Identities=10% Similarity=0.116 Sum_probs=197.8
Q ss_pred cccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
...|.+.|++++|+|||++||+|+.+| ++||+..+.+.. ...+.
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~-------------------------~~~~~---------- 58 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI-------------------------MSQEM---------- 58 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE-------------------------EEEEC----------
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee-------------------------eeeec----------
Confidence 356899999999999999999999875 789997654321 11111
Q ss_pred ccccceeEEEeecCCCceE-EEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 111 IEEKINKIRWCQSANSALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l-~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
..+..+++.+ +++.+ ++++.|++|++||+.+++.....
T Consensus 59 --~~~~~~~~~~--~~~~~~~~~~~d~~v~iWd~~~~~~~~~~------------------------------------- 97 (355)
T 3vu4_A 59 --RHLSKVRMLH--RTNYVAFVTGVKEVVHIWDDVKKQDVSRI------------------------------------- 97 (355)
T ss_dssp --SCCCEEEECT--TSSEEEEECSSTTEEEEEETTTTEEEEEE-------------------------------------
T ss_pred --CCeEEEEEcC--CCCEEEEEECCccEEEEEECCCCcEEEEE-------------------------------------
Confidence 2377778855 34455 56788899999999988754421
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNI 269 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~ 269 (513)
.+...|.+++++++ .++++.++.|++||+.+......
T Consensus 98 ----------------------------------------~~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~~~~- 134 (355)
T 3vu4_A 98 ----------------------------------------KVDAPVKDLFLSRE--FIVVSYGDVISVFKFGNPWKRIT- 134 (355)
T ss_dssp ----------------------------------------ECSSCEEEEEECSS--EEEEEETTEEEEEESSTTCCBSS-
T ss_pred ----------------------------------------ECCCceEEEEEcCC--EEEEEEcCEEEEEECCCCceeeE-
Confidence 23346889999875 45556788999999987622221
Q ss_pred cccCccccccccCCeEEEEEeCCCCeEEEE-EeCCCcEEEEEcCCcccccccceeeccccCCCC-ccccccccccEEEEE
Q 010287 270 VDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT-RSFFTEIIASISDIK 347 (513)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~ 347 (513)
.+.. ....+++++ . .+.++ ++.||.|++||++++............ ....+ ...+.+|.+.|.+++
T Consensus 135 ------~~~~---~~~~~~~s~-~-~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~-~~~~p~~~~~~~h~~~v~~~~ 202 (355)
T 3vu4_A 135 ------DDIR---FGGVCEFSN-G-LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ-KAILGKGVLIKAHTNPIKMVR 202 (355)
T ss_dssp ------CCEE---EEEEEEEET-T-EEEEEESSCTTCEEEEECCC-------------------CCEEECCCSSCEEEEE
T ss_pred ------Eecc---CCceEEEEc-c-EEEEeCCCcCcEEEEEECCCCCccccccccccc-cccCcccEEEEccCCceEEEE
Confidence 2222 445566777 3 34333 688999999999876421100000000 00001 223567889999999
Q ss_pred EeecCCEEEEEeC-Ce-EEEEEccCCCCCeeeee-c-ccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEE
Q 010287 348 FARNGRHILSRDY-MT-LKLWDINMDSGPVATFQ-V-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 423 (513)
Q Consensus 348 ~sp~~~~l~~~~~-~~-v~iwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 423 (513)
|+|++++|++|+. ++ |++||+++ ++.+..+. + |... |++++|+|++++|++++.|+.|++
T Consensus 203 ~s~~g~~l~s~s~d~~~v~iwd~~~-~~~~~~~~~g~h~~~---------------v~~~~~s~~~~~l~s~s~d~~v~i 266 (355)
T 3vu4_A 203 LNRKSDMVATCSQDGTIIRVFKTED-GVLVREFRRGLDRAD---------------VVDMKWSTDGSKLAVVSDKWTLHV 266 (355)
T ss_dssp ECTTSSEEEEEETTCSEEEEEETTT-CCEEEEEECTTCCSC---------------EEEEEECTTSCEEEEEETTCEEEE
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCCCCc---------------EEEEEECCCCCEEEEEECCCEEEE
Confidence 9999999999885 98 99999997 88888887 4 6554 569999999999999999999999
Q ss_pred EecCCCCccc-eeecC---------------------CCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 424 FGCSEGSAES-TTLEA---------------------SKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 424 wd~~~~~~~~-~~~~~---------------------~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
||+....... ..+.. ...+...++|+++++.+++++.||.+++
T Consensus 267 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~ 331 (355)
T 3vu4_A 267 FEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIET 331 (355)
T ss_dssp EESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEE
T ss_pred EEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEE
Confidence 9997653211 11111 1223467899999999999999999988
No 108
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.98 E-value=5.4e-30 Score=245.36 Aligned_cols=265 Identities=15% Similarity=0.213 Sum_probs=199.8
Q ss_pred cccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCc
Q 010287 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (513)
Q Consensus 106 ~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 185 (513)
...+.|.+.|++++|+|. ++.+|++++.||.|++|++........ +.+.
T Consensus 122 ~~~~~h~~~v~~l~~~p~-~~~~lat~~~dg~V~vwd~~~~~~~~~-----------------------------~~~~- 170 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQ-NACVIATKTPSSDVLVFDYTKHPSKPE-----------------------------PSGE- 170 (430)
T ss_dssp EEEEEESSCCSEEEEETT-EEEEEEEECSSSCEEEEEGGGSCSSCC-----------------------------TTCC-
T ss_pred EEEEcCCCcEEEEEECCC-CCcEEEEECCCCcEEEEECCCcccccC-----------------------------cccc-
Confidence 334445589999999762 256899999999999999976421100 0000
Q ss_pred cccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCC-EEEEE-cCCeEEEEEcCCC
Q 010287 186 GERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEIS 263 (513)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~vwd~~~~ 263 (513)
.... ..+.+|...|.+++|+|+++ +|++| .||.|++|++...
T Consensus 171 -----------------------------------~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 214 (430)
T 2xyi_A 171 -----------------------------------CQPD-LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINAT 214 (430)
T ss_dssp -----------------------------------CCCS-EEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSC
T ss_pred -----------------------------------CCCc-EEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCC
Confidence 0001 11468889999999999988 89888 7999999999874
Q ss_pred cceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccE
Q 010287 264 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 343 (513)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 343 (513)
......+.. ...+..|...|.+++|+|++..+|++++.||.|++||++++... +.... +..|...|
T Consensus 215 ~~~~~~~~~-~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-~~~~~------------~~~~~~~v 280 (430)
T 2xyi_A 215 PKEHRVIDA-KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-KPSHT------------VDAHTAEV 280 (430)
T ss_dssp CBGGGEEEC-SEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS-SCSEE------------EECCSSCE
T ss_pred CCCCceecc-ceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC-cceeE------------eecCCCCe
Confidence 322111100 12456799999999999955589999999999999999876311 11222 23456789
Q ss_pred EEEEEeecCC-EEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC-EEEEEeCCCc
Q 010287 344 SDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNL 420 (513)
Q Consensus 344 ~~i~~sp~~~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~ 420 (513)
++++|+|+++ ++++|+. +.|++||++....++..+..|... |++++|+|+++ +|++++.|+.
T Consensus 281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~---------------v~~i~~sp~~~~~l~s~~~d~~ 345 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE---------------IFQVQWSPHNETILASSGTDRR 345 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC---------------EEEEEECSSCTTEEEEEETTSC
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC---------------EEEEEECCCCCCEEEEEeCCCc
Confidence 9999999987 5777775 999999999756678888877665 56999999995 6889999999
Q ss_pred EEEEecCCCC-------------ccceeecCCCCceeEEEEcCCCC-ceeeecCCCeEEE
Q 010287 421 FRVFGCSEGS-------------AESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR 466 (513)
Q Consensus 421 i~vwd~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~ 466 (513)
|++||+.... .......+|...+..+.|+|+++ ++++++.|+.|++
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~i 405 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQV 405 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEE
Confidence 9999998732 33456678999999999999999 8899999999999
No 109
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.98 E-value=1.6e-30 Score=248.96 Aligned_cols=270 Identities=16% Similarity=0.236 Sum_probs=199.1
Q ss_pred cccccccccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccc
Q 010287 29 GEEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (513)
Q Consensus 29 ~~~~~h~~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (513)
.....|.+.|++++|+|+ +.+||+|+.+|.|+||++........ ..........+.+|.
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-------------~~~~~~~~~~~~~h~------- 181 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-------------PSGECQPDLRLRGHQ------- 181 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-------------TTCCCCCSEEEECCS-------
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-------------ccccCCCcEEecCCC-------
Confidence 346789999999999997 78999999999999999875321100 000112234566777
Q ss_pred cccccccceeEEEeecCCCc-eEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287 108 SLEIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (513)
Q Consensus 108 ~~~~~~~i~~i~~~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 186 (513)
..|.+++|+| ++. +|++++.||.|++|++..+.......
T Consensus 182 -----~~v~~l~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--------------------------------- 221 (430)
T 2xyi_A 182 -----KEGYGLSWNP--NLNGYLLSASDDHTICLWDINATPKEHRVI--------------------------------- 221 (430)
T ss_dssp -----SCCCCEEECT--TSTTEEEEECTTSCEEEEETTSCCBGGGEE---------------------------------
T ss_pred -----CCeEEEEeCC--CCCCeEEEEeCCCeEEEEeCCCCCCCCcee---------------------------------
Confidence 8899999966 555 89999999999999998743110000
Q ss_pred ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEEEEE-cCCeEEEEEcCCCc
Q 010287 187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISN 264 (513)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~ 264 (513)
.. ...+.+|...|.+++|+| ++.+|+++ .|+.|++||+++..
T Consensus 222 -----------------------------------~~-~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~ 265 (430)
T 2xyi_A 222 -----------------------------------DA-KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN 265 (430)
T ss_dssp -----------------------------------EC-SEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC
T ss_pred -----------------------------------cc-ceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 00 011357888999999999 67788888 79999999999763
Q ss_pred ceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEE
Q 010287 265 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 344 (513)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 344 (513)
....+ ..+..|...|++++|+|++..+|++++.||.|++||+++.... +.. +..|...|.
T Consensus 266 ~~~~~-----~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~---~~~------------~~~h~~~v~ 325 (430)
T 2xyi_A 266 TSKPS-----HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK---LHS------------FESHKDEIF 325 (430)
T ss_dssp SSSCS-----EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC---SEE------------EECCSSCEE
T ss_pred CCcce-----eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC---eEE------------eecCCCCEE
Confidence 11111 1446789999999999998568999999999999999874321 223 344568899
Q ss_pred EEEEeecCC-EEEEEe-CCeEEEEEccCCC-------------CCeeeeecccccccccccccccCCccceeeEEEeCCC
Q 010287 345 DIKFARNGR-HILSRD-YMTLKLWDINMDS-------------GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 409 (513)
Q Consensus 345 ~i~~sp~~~-~l~~~~-~~~v~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 409 (513)
+++|+|+++ +|++++ ++.|++||+...+ ..+..+.+|... |.+++|+|++
T Consensus 326 ~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~~~~~p~~ 390 (430)
T 2xyi_A 326 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK---------------ISDFSWNPNE 390 (430)
T ss_dssp EEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSC---------------EEEEEECSSS
T ss_pred EEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCC---------------ceEEEECCCC
Confidence 999999985 577766 4999999998522 233333444433 5599999999
Q ss_pred C-EEEEEeCCCcEEEEecCCC
Q 010287 410 G-RVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 410 ~-~l~~~~~dg~i~vwd~~~~ 429 (513)
+ +|++++.||.|++|++...
T Consensus 391 ~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 391 PWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TTEEEEEETTSEEEEEEECHH
T ss_pred CCEEEEEECCCCEEEeEcccc
Confidence 9 8999999999999998753
No 110
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=6.2e-31 Score=249.96 Aligned_cols=252 Identities=13% Similarity=0.133 Sum_probs=191.0
Q ss_pred eccccCCeEEEEecc-CCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287 228 AHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 305 (513)
Q Consensus 228 ~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 305 (513)
+.+|...|.+++|+| ++++|++| .||.|++||+.++....... .....+.+|...|.+++|+|++.++|++++.|+.
T Consensus 77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~ 155 (402)
T 2aq5_A 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR-EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155 (402)
T ss_dssp BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBC-SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccC-CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence 358899999999999 89999998 79999999998764211000 0012567899999999999997579999999999
Q ss_pred EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeee-ecccc
Q 010287 306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATF-QVHEH 383 (513)
Q Consensus 306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~-~~~~~ 383 (513)
|++||+++++. ...+. ..+|...|.+++|+|++.+|++++. +.|++||++. ++.+..+ ..|..
T Consensus 156 i~iwd~~~~~~----~~~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~ 220 (402)
T 2aq5_A 156 ILVWDVGTGAA----VLTLG----------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK-GTVVAEKDRPHEG 220 (402)
T ss_dssp EEEEETTTTEE----EEEEC----------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT-TEEEEEEECSSCS
T ss_pred EEEEECCCCCc----cEEEe----------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC-CceeeeeccCCCC
Confidence 99999998765 22321 0345578999999999999999875 9999999996 7777766 55554
Q ss_pred cccccccccccCCccceeeEEEeCCCCEEEEE---eCCCcEEEEecCCCCccceeec-CCCCceeEEEEcCCCCcee-ee
Q 010287 384 LRPKLCDLYENDSIFDKFECCLSGDGGRVATG---SYSNLFRVFGCSEGSAESTTLE-ASKNPMRRQVQTPSRPSRP-LG 458 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~~dg~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-~~ 458 (513)
.. +..+.|+|++++|++| +.|+.|++||+.+......... .+...+..+.|+|++++|+ +|
T Consensus 221 ~~--------------~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g 286 (402)
T 2aq5_A 221 TR--------------PVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCG 286 (402)
T ss_dssp SS--------------CCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEE
T ss_pred Cc--------------ceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEE
Confidence 31 2389999999999999 7899999999998755333333 5677899999999999986 56
Q ss_pred cCCCeEEEe--cCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287 459 SLSGVVRRV--KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 459 ~~d~~i~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 512 (513)
+.|+.|++. ....+. ........|...|.+++|+|++.++++ +++.+.+|.
T Consensus 287 ~~dg~i~i~d~~~~~~~--~~~l~~~~~~~~v~~~~~sp~~~~~~s-~~~~~~~~~ 339 (402)
T 2aq5_A 287 KGDSSIRYFEITSEAPF--LHYLSMFSSKESQRGMGYMPKRGLEVN-KCEIARFYK 339 (402)
T ss_dssp TTCSCEEEEEECSSTTC--EEEEEEECCSSCCSEEEECCGGGSCGG-GTEEEEEEE
T ss_pred cCCCeEEEEEecCCCcc--eEeecccccCCcccceEEeccccccee-cceeEEEEE
Confidence 689999992 222110 001112235689999999999998875 444677775
No 111
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=1.1e-29 Score=243.85 Aligned_cols=266 Identities=18% Similarity=0.264 Sum_probs=212.9
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
..|.+++| ++.++++++.||.|++||+.+++....
T Consensus 134 ~~v~~~~~----d~~~l~~g~~dg~i~iwd~~~~~~~~~----------------------------------------- 168 (435)
T 1p22_A 134 KGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRI----------------------------------------- 168 (435)
T ss_dssp CCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEE-----------------------------------------
T ss_pred CcEEEEEE----CCCEEEEEeCCCeEEEEeCCCCeEEEE-----------------------------------------
Confidence 67888888 567999999999999999987764332
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
+.+|...|.+++| ++++|++| .||.|++||+++++...
T Consensus 169 -----------------------------------~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~---- 207 (435)
T 1p22_A 169 -----------------------------------LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN---- 207 (435)
T ss_dssp -----------------------------------ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE----
T ss_pred -----------------------------------EcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE----
Confidence 3578888999998 77899998 79999999999776443
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 351 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 351 (513)
.+.+|...|.+++|++ ..+++++.||.|++||++++..... .. .+.+|...|.+++| +
T Consensus 208 ----~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~-~~------------~~~~~~~~v~~~~~--~ 265 (435)
T 1p22_A 208 ----TLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITL-RR------------VLVGHRAAVNVVDF--D 265 (435)
T ss_dssp ----EECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEE-EE------------EECCCSSCEEEEEE--E
T ss_pred ----EEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCcee-ee------------EecCCCCcEEEEEe--C
Confidence 4567999999999974 5899999999999999987654210 01 13456688999998 7
Q ss_pred CCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287 352 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 430 (513)
Q Consensus 352 ~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 430 (513)
+.++++|+. +.|++||+++ ++.+..+..|... +.++.| ++++|++|+.||.|++||+.++
T Consensus 266 ~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~---------------v~~~~~--~~~~l~~g~~dg~i~iwd~~~~- 326 (435)
T 1p22_A 266 DKYIVSASGDRTIKVWNTST-CEFVRTLNGHKRG---------------IACLQY--RDRLVVSGSSDNTIRLWDIECG- 326 (435)
T ss_dssp TTEEEEEETTSEEEEEETTT-CCEEEEEECCSSC---------------EEEEEE--ETTEEEEEETTSCEEEEETTTC-
T ss_pred CCEEEEEeCCCeEEEEECCc-CcEEEEEcCCCCc---------------EEEEEe--CCCEEEEEeCCCeEEEEECCCC-
Confidence 889999875 9999999997 8888888877765 346677 5789999999999999999987
Q ss_pred ccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccc---------cCCccccccCCeeEEEEeCCCCEEE
Q 010287 431 AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALD---------ANGNAFDFSMKLLHLAWHPSENSIA 501 (513)
Q Consensus 431 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~---------~~~~~~~~~~~i~~~~~sp~~~~la 501 (513)
.....+.+|..++.++.+ ++.+|++|+.||.|++ |+..... .......|...|.+++| ++++|+
T Consensus 327 ~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~v---wd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~ 399 (435)
T 1p22_A 327 ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKV---WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIV 399 (435)
T ss_dssp CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE---EEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEE
T ss_pred CEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEE---EECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEE
Confidence 455788899999999998 7889999999999999 2211100 12233468899999999 778888
Q ss_pred EEc-CCcEEEEe
Q 010287 502 CAA-SNSLYMYY 512 (513)
Q Consensus 502 ~~~-~~~~~i~~ 512 (513)
+++ ++.+.+|+
T Consensus 400 s~s~Dg~i~iwd 411 (435)
T 1p22_A 400 SSSHDDTILIWD 411 (435)
T ss_dssp ECCSSSEEEEEC
T ss_pred EEeCCCEEEEEE
Confidence 888 77788886
No 112
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=2.7e-29 Score=230.80 Aligned_cols=238 Identities=15% Similarity=0.228 Sum_probs=181.2
Q ss_pred ccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEE
Q 010287 229 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 307 (513)
Q Consensus 229 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 307 (513)
.+|...|.+++|+|++++|++| .|++|++||+++++... .+.+|...+.++.+.+ ..+++++.++.++
T Consensus 64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~--------~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~ 132 (318)
T 4ggc_A 64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR--------NMTSHSARVGSLSWNS---YILSSGSRSGHIH 132 (318)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--------EEECCSSCEEEEEEET---TEEEEEETTSEEE
T ss_pred cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE--------EecCccceEEEeecCC---CEEEEEecCCceE
Confidence 4677789999999999999999 79999999999776543 4567888887766654 6899999999999
Q ss_pred EEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCe----eeeeccc
Q 010287 308 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPV----ATFQVHE 382 (513)
Q Consensus 308 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~----~~~~~~~ 382 (513)
+|+....... ... +.+|...+..+.++++++++++++. +.|++||+++ ++.. .....+.
T Consensus 133 ~~~~~~~~~~---~~~------------~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~ 196 (318)
T 4ggc_A 133 HHDVRVAEHH---VAT------------LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP-GEGGWVPLQTFTQHQ 196 (318)
T ss_dssp EEETTSSSCE---EEE------------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC-BTTBSCCSEEECCCC
T ss_pred eeecCCCcee---EEE------------EcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC-CcccccceeeecccC
Confidence 9998765432 122 3456678999999999999999875 9999999986 3322 2222222
Q ss_pred ccccccccccccCCccceeeEEEeCCCCEE---EEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeee-
Q 010287 383 HLRPKLCDLYENDSIFDKFECCLSGDGGRV---ATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG- 458 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l---~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 458 (513)
.. |..+.++|++..+ ++++.++.|++||...... .....+...+..+.++++++.++++
T Consensus 197 ~~---------------v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~s 259 (318)
T 4ggc_A 197 GA---------------VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC--LSAVDAHSQVCSILWSPHYKELISGH 259 (318)
T ss_dssp SC---------------EEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE--EEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred Cc---------------eEEEEecCCCCcEEEEEecCCCCEEEEEecccccc--cccccceeeeeeeeecccccceEEEE
Confidence 22 4578899877643 3667889999999986632 3445567788999999999988654
Q ss_pred -cCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEeC
Q 010287 459 -SLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYYA 513 (513)
Q Consensus 459 -~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~~ 513 (513)
+.|+.|++ |+....+......+|.+.|++++|+||+++||+++ |+.++||+.
T Consensus 260 g~~d~~i~i---wd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 260 GFAQNQLVI---WKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp CTTTCCEEE---EETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred EcCCCEEEE---EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 48999999 43332233344556999999999999999999888 667889963
No 113
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.2e-30 Score=246.49 Aligned_cols=258 Identities=10% Similarity=0.102 Sum_probs=162.2
Q ss_pred cccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeC--------CCCeEEEEE
Q 010287 230 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--------THCNMLAYS 300 (513)
Q Consensus 230 ~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~~~l~~~ 300 (513)
.|........+.+++.+|+++ .|++|++||.+++....... ...+.+|...|.+++|+| ++ ++|+++
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~---~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~ 162 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHV---LGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASV 162 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEE---ECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEE
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeee---ecccCCCCCceEEEEEccccccccCCCC-CEEEEE
Confidence 444555556667788889988 79999999998765322110 025789999999999998 66 899999
Q ss_pred eCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC-EEEEEeC-CeEEEEEccCCCCCeeee
Q 010287 301 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATF 378 (513)
Q Consensus 301 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~-~l~~~~~-~~v~iwd~~~~~~~~~~~ 378 (513)
+.|++|+|||++++... .. +.+|...+.+++|+|++. +|++++. ++|++||+++ ++.....
T Consensus 163 s~D~tv~~Wd~~~~~~~----~~------------~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t-~~~~~~~ 225 (393)
T 4gq1_A 163 GDDCTLIIWRLTDEGPI----LA------------GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTL-NLSAEEN 225 (393)
T ss_dssp ETTSEEEEEEEETTEEE----EE------------EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC-CC-----
T ss_pred ECCCeEEEEECCCCcee----ee------------ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCC-Ccccccc
Confidence 99999999999876542 11 234557899999999874 7888775 9999999986 4433332
Q ss_pred eccccccccc----------ccccccCCccceeeEEEe-CCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEE-
Q 010287 379 QVHEHLRPKL----------CDLYENDSIFDKFECCLS-GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQ- 446 (513)
Q Consensus 379 ~~~~~~~~~~----------~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~- 446 (513)
..+....... ...........+..+.|+ ||++.|++++.|+.+++||+..+. ....+..|...+..+
T Consensus 226 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~-~~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 226 SQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN-DYNEISDSTMKLGPKN 304 (393)
T ss_dssp -----CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------C
T ss_pred cccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC-CCceEeeecCccccEE
Confidence 2211110000 000000111134578886 899999999999999999998763 223333333333222
Q ss_pred -----------------EEcC--CCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCc
Q 010287 447 -----------------VQTP--SRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS 507 (513)
Q Consensus 447 -----------------~~~~--~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~ 507 (513)
.+.| ++.++++|+.||.|++ |+............|..+|.+++|||||++||++++++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~l---wd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQL---INTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEE---EETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred EccccccccccCcceeEEEccCCCCEEEEEECCCCEEEE---EECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 2322 3446788999999999 44333233444567889999999999999999999999
Q ss_pred EEEEe
Q 010287 508 LYMYY 512 (513)
Q Consensus 508 ~~i~~ 512 (513)
+.+|.
T Consensus 382 v~lvr 386 (393)
T 4gq1_A 382 VLLTR 386 (393)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 99885
No 114
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.6e-30 Score=247.74 Aligned_cols=317 Identities=10% Similarity=0.134 Sum_probs=215.8
Q ss_pred cccccccccee-cc-ccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEee---CCCCCCCccCccccccccccCC
Q 010287 13 QPLEWKFSQVF-GE-RTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERT---DTRDNGGQRRDLEMMDYSMSRH 87 (513)
Q Consensus 13 ~~~~w~~~~~~-~~-~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~---~~~~~~~~~~~~~~~~~~~~~~ 87 (513)
....|++...- +. ........|...|++++|+|++++|++|+.||.|++||+. .++..
T Consensus 87 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~----------------- 149 (437)
T 3gre_A 87 VIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEV----------------- 149 (437)
T ss_dssp EEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEE-----------------
T ss_pred eEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCcee-----------------
Confidence 45567765410 11 1112233699999999999999999999999999999985 33211
Q ss_pred CcceEeccccCCCCccccccccc-----ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCccc
Q 010287 88 PEFRYKTEFQSHEPEFDYLKSLE-----IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAA 162 (513)
Q Consensus 88 ~~~~~~~~~~~h~~~~~~~~~~~-----~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 162 (513)
..+.+|. +..+. ....+.++.+..++++.++++++.|+.|++||+++++.......
T Consensus 150 ------~~~~~~~-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------- 210 (437)
T 3gre_A 150 ------KFLNCEC-----IRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN-------- 210 (437)
T ss_dssp ------EEEEEEE-----EEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC--------
T ss_pred ------eccccce-----eEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc--------
Confidence 1111110 11111 22678888877677889999999999999999988765433110
Q ss_pred CCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc
Q 010287 163 GNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS 242 (513)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 242 (513)
..|...|.+++|+|
T Consensus 211 ------------------------------------------------------------------~~h~~~v~~~~~s~ 224 (437)
T 3gre_A 211 ------------------------------------------------------------------SPRHGAVSSICIDE 224 (437)
T ss_dssp ------------------------------------------------------------------CGGGCCEEEEEECT
T ss_pred ------------------------------------------------------------------CCCCCceEEEEECC
Confidence 12677899999999
Q ss_pred CCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeC----CCCeEEEEEeCCCcEEEEEcCCcccc
Q 010287 243 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP----THCNMLAYSSSKGSIRLIDMRQSALC 317 (513)
Q Consensus 243 ~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~~~dg~i~vwd~~~~~~~ 317 (513)
++++|++| .||.|++||++++.....+ ...|...|.+++|+| ++ .+|++++.||.|++||+++++.
T Consensus 225 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~- 295 (437)
T 3gre_A 225 ECCVLILGTTRGIIDIWDIRFNVLIRSW-------SFGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHC- 295 (437)
T ss_dssp TSCEEEEEETTSCEEEEETTTTEEEEEE-------BCTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEE-
T ss_pred CCCEEEEEcCCCeEEEEEcCCccEEEEE-------ecCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcE-
Confidence 99999998 7999999999975543321 125677899997665 55 7999999999999999998765
Q ss_pred cccceeeccccCCCCc------------ccccc--ccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccc
Q 010287 318 DTHSKLFEEQEAPGTR------------SFFTE--IIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHE 382 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~~------------~~~~~--~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~ 382 (513)
...+..+...... ..+.+ |...|.+++|+ ++++|++|+. +.|++||+.. ++....+.+|.
T Consensus 296 ---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~ 370 (437)
T 3gre_A 296 ---QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE-LSSSKAVISPS 370 (437)
T ss_dssp ---EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC-GGGCEEEECC-
T ss_pred ---EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC-cccceEEeccc
Confidence 3333332211110 01233 78899999999 8889999874 9999999996 77778887765
Q ss_pred ccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCC--CCceeeecC
Q 010287 383 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS--RPSRPLGSL 460 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~ 460 (513)
..... +....++++..+++.. |+.... ........|...|.++.+.++ +.+|++|+.
T Consensus 371 ~~~~~------------~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~ 429 (437)
T 3gre_A 371 RFSDV------------FIPTQVTANLTMLLRK--------MKRTST-HSVDDSLYHHDIINSISTCEVDETPLLVACDN 429 (437)
T ss_dssp -CCCE------------EEEEEEETTEEEEEEE--------CC--------------CCCEEEEEEEESSSSEEEEEEET
T ss_pred ccCce------------EEEEEeecceEEEEEe--------cccccc-cccCcccccccceeeEeeeccCCceEEEEEcC
Confidence 43211 2255666666555544 222222 222455679999999999988 789999999
Q ss_pred CCeEEE
Q 010287 461 SGVVRR 466 (513)
Q Consensus 461 d~~i~~ 466 (513)
||.|++
T Consensus 430 dG~I~i 435 (437)
T 3gre_A 430 SGLIGI 435 (437)
T ss_dssp TSCEEE
T ss_pred CceEEE
Confidence 999998
No 115
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-30 Score=244.23 Aligned_cols=229 Identities=9% Similarity=0.049 Sum_probs=170.5
Q ss_pred ccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEE
Q 010287 229 HAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 308 (513)
Q Consensus 229 ~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v 308 (513)
.+|...|.+++|+|+| .++.+.+|+.+.. ... .+ .|...|.+++|+|+| ..||+++.||.|++
T Consensus 49 ~gh~~~v~~V~FsPdg------~~~~~~~~~~~~~-~~~--------~~-~~~~~V~~vawSPdG-~~LAs~s~dg~V~i 111 (588)
T 2j04_A 49 NCNSKNLFHVKEFPLE------FENKLDFELAQQN-GLL--------NS-QPVCYPRVCKPSPID-DWMAVLSNNGNVSV 111 (588)
T ss_dssp SSBGGGTEEEEEECCC------CCCTTTTSCCCSS-CSS--------TT-SCSCCEEEEEECSSS-SCEEEEETTSCEEE
T ss_pred cCCCccEEEEEECCCC------CcceEEEEeCCCc-eEe--------ec-CCCCcEEEEEECCCC-CEEEEEeCCCcEEE
Confidence 4788889999999998 4555555554311 111 22 357889999999999 99999999999999
Q ss_pred EEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCC-------eeeee-
Q 010287 309 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGP-------VATFQ- 379 (513)
Q Consensus 309 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~-------~~~~~- 379 (513)
||... . +..++ +..+.. ...+.+++|||||++|++|++ |+|++||+.. +.. +.++.
T Consensus 112 wd~~~--~----l~~l~-~~~~~~-------~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~-~~l~~~~~i~l~ti~~ 176 (588)
T 2j04_A 112 FKDNK--M----LTNLD-SKGNLS-------SRTYHCFEWNPIESSIVVGNEDGELQFFSIRK-NSENTPEFYFESSIRL 176 (588)
T ss_dssp EETTE--E----EEECC-CSSCST-------TTCEEEEEECSSSSCEEEEETTSEEEEEECCC-CTTTCCCCEEEEEEEC
T ss_pred EeCCc--e----eeecc-CCCccc-------cccEEEEEEcCCCCEEEEEcCCCEEEEEECCC-Cccccccceeeeeeec
Confidence 99543 1 23333 221000 135999999999999999886 9999999985 432 45553
Q ss_pred ---cccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc--ceee-cCCCCceeEEEEcCCCC
Q 010287 380 ---VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE--STTL-EASKNPMRRQVQTPSRP 453 (513)
Q Consensus 380 ---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~-~~~~~~v~~~~~~~~~~ 453 (513)
+|... |.+++|+||| +++++.|+.|++||+..+... ..++ .+|...|.+++|+ ++
T Consensus 177 ~~~gh~~~---------------V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~ 237 (588)
T 2j04_A 177 SDAGSKDW---------------VTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY 237 (588)
T ss_dssp SCTTCCCC---------------EEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT
T ss_pred cccccccc---------------EEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CC
Confidence 33333 5699999999 888899999999999876432 2456 4888999999999 68
Q ss_pred ceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEE--eCCCCEEEEEcCCcEEEEe
Q 010287 454 SRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW--HPSENSIACAASNSLYMYY 512 (513)
Q Consensus 454 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--sp~~~~la~~~~~~~~i~~ 512 (513)
.||+++ ++.|++ |+...........+|...|..++| +||+..|+++..++..+|.
T Consensus 238 ~LASa~-~~tIkL---Wd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~ 294 (588)
T 2j04_A 238 KVVLTC-PGYVHK---IDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLL 294 (588)
T ss_dssp EEEEEC-SSEEEE---EETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEE
T ss_pred EEEEEe-CCeEEE---EECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEe
Confidence 999887 699999 444332232233369999999999 9999999999977767775
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-28 Score=236.52 Aligned_cols=238 Identities=10% Similarity=0.085 Sum_probs=177.4
Q ss_pred ccccCCeEEEEeccCCCEE-EEE-cCCeEEEEEcC--CCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC
Q 010287 229 HAHDYHINSISNNSDGETF-ISA-DDLRINLWNLE--ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 304 (513)
Q Consensus 229 ~~h~~~v~~~~~~~~~~~l-~s~-~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 304 (513)
.+|...|.+++|+|++++| +++ .|+.|++||+. +++....+ ....|...|.+++|+|++ .+|++++.+|
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~------~~~~~~~~v~~~~~sp~~-~~l~~~~~~g 171 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR------KRFCFSKRPNAISIAEDD-TTVIIADKFG 171 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE------EEEECSSCEEEEEECTTS-SEEEEEETTS
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee------ecccCCCCceEEEEcCCC-CEEEEEeCCC
Confidence 4677789999999999996 777 69999999998 55433221 112567889999999999 8999999999
Q ss_pred cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec---CCEEEEEeC-CeEEEEEccCCCCCeee-ee
Q 010287 305 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILSRDY-MTLKLWDINMDSGPVAT-FQ 379 (513)
Q Consensus 305 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~---~~~l~~~~~-~~v~iwd~~~~~~~~~~-~~ 379 (513)
.|++|++.++........ .+.+|...|.+++|+|+ +++|++++. +.|++||++. +..+.. +.
T Consensus 172 ~v~~~~~~~~~~~~~~~~------------~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~ 238 (450)
T 2vdu_B 172 DVYSIDINSIPEEKFTQE------------PILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-CFIVDKWLF 238 (450)
T ss_dssp EEEEEETTSCCCSSCCCC------------CSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-TTCEEEECC
T ss_pred cEEEEecCCcccccccce------------eeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-Cceeeeeec
Confidence 999999987664211111 24567789999999999 999999875 9999999986 666665 44
Q ss_pred cccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeec----------------------
Q 010287 380 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE---------------------- 437 (513)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---------------------- 437 (513)
+|... |++++|+ ++++|++++.|+.|++||+.++... ..+.
T Consensus 239 ~h~~~---------------v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (450)
T 2vdu_B 239 GHKHF---------------VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNL-STFDYNSLIKPYLNDQHLAPPRFQNE 301 (450)
T ss_dssp CCSSC---------------EEEEEEC-STTEEEEEESSSEEEEEETTTCCEE-EEEECHHHHGGGCCTTSBC-------
T ss_pred CCCCc---------------eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEe-eeecchhhhhhhhhhccccccccccc
Confidence 66654 5589999 9999999999999999999987433 3333
Q ss_pred ---CCCCceeEEEEcCCCCceeeec-CCCeEEEecC--CCCCccccCCccccccCCeeEEEEeCCCCEEEEEc
Q 010287 438 ---ASKNPMRRQVQTPSRPSRPLGS-LSGVVRRVKG--ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 504 (513)
Q Consensus 438 ---~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 504 (513)
.....+..+.++|++++|++++ .|+.|++... ..............+ ..|.+++|+|++.++++++
T Consensus 302 ~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~ 373 (450)
T 2vdu_B 302 NNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDN 373 (450)
T ss_dssp ---CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECC
T ss_pred ccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEec
Confidence 2235688999999999999998 8999999222 110100111112223 8899999999654444444
No 117
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=6e-29 Score=240.02 Aligned_cols=274 Identities=14% Similarity=0.141 Sum_probs=191.0
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
+.+.|++++|+| ++.+|++|+.||.|++|++.+++.....
T Consensus 27 ~~~~V~~v~~s~--~g~~la~g~~dg~v~iw~~~~~~~~~~~-------------------------------------- 66 (447)
T 3dw8_B 27 EADIISTVEFNH--SGELLATGDKGGRVVIFQQEQENKIQSH-------------------------------------- 66 (447)
T ss_dssp GGGSEEEEEECS--SSSEEEEEETTSEEEEEEECC-----CC--------------------------------------
T ss_pred ccCcEEEEEECC--CCCEEEEEcCCCeEEEEEecCCCCCCcc--------------------------------------
Confidence 348899999965 7889999999999999999876521100
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeecccc------------CCeEEEEeccCC--CEEEEE-cCCeE
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHD------------YHINSISNNSDG--ETFISA-DDLRI 255 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~~~--~~l~s~-~d~~i 255 (513)
..+..+ .. ..+.+|. ..|.+++|+|++ ..|+++ .|+.|
T Consensus 67 ------------~~~~~~--------------~~-~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i 119 (447)
T 3dw8_B 67 ------------SRGEYN--------------VY-STFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTI 119 (447)
T ss_dssp ------------CCCCEE--------------EE-EEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCE
T ss_pred ------------ccccee--------------Ee-cccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeE
Confidence 000000 00 1134565 779999999998 788887 79999
Q ss_pred EEEEcCCCcceeeecccCc--------------------------------cccccccCCeEEEEEeCCCCeEEEEEeCC
Q 010287 256 NLWNLEISNQSFNIVDVKP--------------------------------ANMEDLTEVITSAEFHPTHCNMLAYSSSK 303 (513)
Q Consensus 256 ~vwd~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 303 (513)
++||+.+.......+.... ....+|...|.+++|+|++ .+|+++ .|
T Consensus 120 ~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d 197 (447)
T 3dw8_B 120 KLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY-ETYLSA-DD 197 (447)
T ss_dssp EEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS-SEEEEE-CS
T ss_pred EEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC-CEEEEe-CC
Confidence 9999975432111000000 0136799999999999998 899998 89
Q ss_pred CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC-CEEEEEeC-CeEEEEEccCCCCC----eee
Q 010287 304 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRDY-MTLKLWDINMDSGP----VAT 377 (513)
Q Consensus 304 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~l~~~~~-~~v~iwd~~~~~~~----~~~ 377 (513)
+.|++||+++.... ...+.... ..+.+|...|.+++|+|++ .+|++|+. +.|++||++. ++. +..
T Consensus 198 ~~i~iwd~~~~~~~---~~~~~~~~-----~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~ 268 (447)
T 3dw8_B 198 LRINLWHLEITDRS---FNIVDIKP-----ANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA-SALCDRHSKL 268 (447)
T ss_dssp SEEEEEETTEEEEE---EEEEECCC-----SSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT-CSSSCTTCEE
T ss_pred CeEEEEECCCCCce---eeeeeccc-----ccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC-CccccceeeE
Confidence 99999999853321 22221111 1256778899999999998 89999875 9999999996 554 566
Q ss_pred eecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCce--------------
Q 010287 378 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPM-------------- 443 (513)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v-------------- 443 (513)
+..|.......... .....|.+++|+|++++|++++. +.|++||+.+.......+..|...+
T Consensus 269 ~~~~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 344 (447)
T 3dw8_B 269 FEEPEDPSNRSFFS---EIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFD 344 (447)
T ss_dssp ECCC-----CCHHH---HHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGC
T ss_pred eccCCCcccccccc---ccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccccc
Confidence 66665310000000 00012569999999999999999 9999999987445567777775322
Q ss_pred -eEEEEcCCCCceeeecCCCeEEE
Q 010287 444 -RRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 444 -~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
..++|+|++++|++|+.||.|++
T Consensus 345 ~~~~~~s~~~~~l~s~s~dg~v~i 368 (447)
T 3dw8_B 345 KFECCWNGSDSVVMTGSYNNFFRM 368 (447)
T ss_dssp CCCEEECTTSSEEEEECSTTEEEE
T ss_pred ceEEEECCCCCEEEEeccCCEEEE
Confidence 24899999999999999999999
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=3.6e-28 Score=233.51 Aligned_cols=279 Identities=9% Similarity=0.107 Sum_probs=205.5
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
..+.+++|+| ++.++++++.|+.|++||+.+++........
T Consensus 123 ~~~~~~~~s~--~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~------------------------------------- 163 (433)
T 3bws_A 123 FQPKSVRFID--NTRLAIPLLEDEGMDVLDINSGQTVRLSPPE------------------------------------- 163 (433)
T ss_dssp SCBCCCEESS--SSEEEEEBTTSSSEEEEETTTCCEEEECCCH-------------------------------------
T ss_pred CCceEEEEeC--CCeEEEEeCCCCeEEEEECCCCeEeeecCcc-------------------------------------
Confidence 4577999966 6677788888999999999988654321110
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecc
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~ 271 (513)
...+|...|.+++|++++++++++ .|+.|++||+++++...
T Consensus 164 ----------------------------------~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~---- 205 (433)
T 3bws_A 164 ----------------------------------KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA---- 205 (433)
T ss_dssp ----------------------------------HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE----
T ss_pred ----------------------------------cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE----
Confidence 024677789999999999999998 79999999998765443
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 351 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 351 (513)
.+..|...+.+++|+|++..++++++.|+.|++||+++++. ...+... ..+.+++|+|+
T Consensus 206 ----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~----~~~~~~~-------------~~~~~~~~~~~ 264 (433)
T 3bws_A 206 ----TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE----IRKTDKI-------------GLPRGLLLSKD 264 (433)
T ss_dssp ----EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE----EEECCCC-------------SEEEEEEECTT
T ss_pred ----EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE----EEEecCC-------------CCceEEEEcCC
Confidence 34567888999999999944446666899999999988764 2222221 45899999999
Q ss_pred CCEEEEEe---------CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEE-EEEeCCCcE
Q 010287 352 GRHILSRD---------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV-ATGSYSNLF 421 (513)
Q Consensus 352 ~~~l~~~~---------~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i 421 (513)
++++++++ ++.|++||+.. ++.+..+.. ... +..++|+|+++.+ ++++.|+.|
T Consensus 265 g~~l~~~~~~~~~~~~~dg~i~~~d~~~-~~~~~~~~~-~~~---------------~~~~~~~~~g~~l~~~~~~~~~v 327 (433)
T 3bws_A 265 GKELYIAQFSASNQESGGGRLGIYSMDK-EKLIDTIGP-PGN---------------KRHIVSGNTENKIYVSDMCCSKI 327 (433)
T ss_dssp SSEEEEEEEESCTTCSCCEEEEEEETTT-TEEEEEEEE-EEC---------------EEEEEECSSTTEEEEEETTTTEE
T ss_pred CCEEEEEECCCCccccCCCeEEEEECCC-CcEEeeccC-CCC---------------cceEEECCCCCEEEEEecCCCEE
Confidence 99988865 47999999985 555544422 211 3479999999765 566899999
Q ss_pred EEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecC---------------CCeEEEecCCCCCccccCCccccccC
Q 010287 422 RVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL---------------SGVVRRVKGADNSALDANGNAFDFSM 486 (513)
Q Consensus 422 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------d~~i~~~~~~~~~~~~~~~~~~~~~~ 486 (513)
++||+.++ +....+. +...+..++++|+++++++++. ||.|++.+.... +. ...+....
T Consensus 328 ~v~d~~~~-~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---~~-~~~~~~~~ 401 (433)
T 3bws_A 328 EVYDLKEK-KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---TV-KEFWEAGN 401 (433)
T ss_dssp EEEETTTT-EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---EE-EEEEECSS
T ss_pred EEEECCCC-cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC---cE-EEEecCCC
Confidence 99999976 3334443 5677889999999998887765 568888322111 11 11223356
Q ss_pred CeeEEEEeCCCCEEEEEc--CCcEEEEe
Q 010287 487 KLLHLAWHPSENSIACAA--SNSLYMYY 512 (513)
Q Consensus 487 ~i~~~~~sp~~~~la~~~--~~~~~i~~ 512 (513)
.+.+++|+|++++|++++ ++.+.+|.
T Consensus 402 ~~~~~~~s~dg~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 402 QPTGLDVSPDNRYLVISDFLDHQIRVYR 429 (433)
T ss_dssp SEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred CCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence 799999999999998664 78899986
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.9e-29 Score=253.04 Aligned_cols=248 Identities=16% Similarity=0.174 Sum_probs=196.3
Q ss_pred cccCCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccc
Q 010287 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (513)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (513)
.+.+|. +.|++++|+| ++.++++++.||+|++||+..+......
T Consensus 4 ~l~gH~------------~~V~~l~~s~--dg~~latg~~dg~I~vwd~~~~~~~~~~---------------------- 47 (753)
T 3jro_A 4 IANAHN------------ELIHDAVLDY--YGKRLATCSSDKTIKIFEVEGETHKLID---------------------- 47 (753)
T ss_dssp ----CC------------CCEEEECCCS--SSCCEEEEETTTEEEEEEEETTEEEEEE----------------------
T ss_pred ecccCc------------ceeEEEEECC--CCCeEEEEECCCcEEEEecCCCCCccce----------------------
Confidence 467888 8999999965 7779999999999999999854322211
Q ss_pred cCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC--CCEEEEE-c
Q 010287 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-D 251 (513)
Q Consensus 175 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~ 251 (513)
.+.+|...|.+++|+++ +++|++| .
T Consensus 48 ----------------------------------------------------~l~~h~~~V~~l~~s~~~~~~~l~s~s~ 75 (753)
T 3jro_A 48 ----------------------------------------------------TLTGHEGPVWRVDWAHPKFGTILASCSY 75 (753)
T ss_dssp ----------------------------------------------------EECCCSSCEEEEEECCTTSCSEEEEEET
T ss_pred ----------------------------------------------------eccCCcCceEEEEecCCCCCCEEEEEeC
Confidence 13578899999999988 9999998 7
Q ss_pred CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCC--CCeEEEEEeCCCcEEEEEcCCcccccccceeeccccC
Q 010287 252 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 329 (513)
Q Consensus 252 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 329 (513)
||.|++||+.++..... ..+..|...|.+++|+|+ + ..+++++.||.|++||++++.... ...
T Consensus 76 Dg~I~vwd~~~~~~~~~------~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~--~~~------ 140 (753)
T 3jro_A 76 DGKVLIWKEENGRWSQI------AVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTS--PII------ 140 (753)
T ss_dssp TSCEEEEEEETTEEEEE------EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCC--CEE------
T ss_pred CCeEEEEECCCCccccc------ccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcc--eeE------
Confidence 99999999987642111 145779999999999999 7 899999999999999998764321 111
Q ss_pred CCCccccccccccEEEEEEee-------------cCCEEEEEeC-CeEEEEEccCCC---CCeeeeeccccccccccccc
Q 010287 330 PGTRSFFTEIIASISDIKFAR-------------NGRHILSRDY-MTLKLWDINMDS---GPVATFQVHEHLRPKLCDLY 392 (513)
Q Consensus 330 ~~~~~~~~~~~~~v~~i~~sp-------------~~~~l~~~~~-~~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~ 392 (513)
+.+|...|.+++|+| ++.++++|+. |.|++||++... .....+.+|...
T Consensus 141 ------~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~-------- 206 (753)
T 3jro_A 141 ------IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW-------- 206 (753)
T ss_dssp ------EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC--------
T ss_pred ------eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc--------
Confidence 345668899999999 5889999875 999999998632 233455556554
Q ss_pred ccCCccceeeEEEeCC---CCEEEEEeCCCcEEEEecCCCCc----cceeecCCCCceeEEEEcCCCCceeeecCCCeEE
Q 010287 393 ENDSIFDKFECCLSGD---GGRVATGSYSNLFRVFGCSEGSA----ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVR 465 (513)
Q Consensus 393 ~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 465 (513)
|++++|+|+ +++|++++.||.|++||+.++.. .......|...+.+++|+|+++++++|+.||.|+
T Consensus 207 -------V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~ 279 (753)
T 3jro_A 207 -------VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 279 (753)
T ss_dssp -------EEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEE
T ss_pred -------EEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEE
Confidence 569999999 89999999999999999987632 2234456888999999999999999999999999
Q ss_pred E
Q 010287 466 R 466 (513)
Q Consensus 466 ~ 466 (513)
+
T Consensus 280 v 280 (753)
T 3jro_A 280 L 280 (753)
T ss_dssp C
T ss_pred E
Confidence 9
No 120
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.1e-28 Score=224.50 Aligned_cols=230 Identities=11% Similarity=0.013 Sum_probs=156.2
Q ss_pred eEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccC-c-cccccccCCeEEEEEeC--CCCeEEEEEeCCCcEEEE
Q 010287 235 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK-P-ANMEDLTEVITSAEFHP--THCNMLAYSSSKGSIRLI 309 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~-~-~~~~~~~~~i~~~~~~~--~~~~~l~~~~~dg~i~vw 309 (513)
|.++.|+|+ ++++ .|++|++|+.............+ . ....+|...|.+++|+| ++ .++++++.||.|++|
T Consensus 79 v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~w 154 (343)
T 3lrv_A 79 PRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQ 154 (343)
T ss_dssp CCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEE
T ss_pred ceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEE
Confidence 555667776 7777 79999999876321111100000 0 01124668899999999 88 899999999999999
Q ss_pred EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCe-eeeec-cccccc
Q 010287 310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPV-ATFQV-HEHLRP 386 (513)
Q Consensus 310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~-~~~~~-~~~~~~ 386 (513)
|+++++. ...... .+...+.+++|+|++.+|++|+. +.|++||+++ ++.+ ..+.. |...
T Consensus 155 d~~~~~~----~~~~~~-----------~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~-~~~~~~~~~~~h~~~-- 216 (343)
T 3lrv_A 155 SYEDDSQ----YIVHSA-----------KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS-PDQASSRFPVDEEAK-- 216 (343)
T ss_dssp ESSSSCE----EEEECC-----------CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC-TTSCCEECCCCTTSC--
T ss_pred ECCCCcE----EEEEec-----------CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CCCCccEEeccCCCC--
Confidence 9998765 222211 12356999999999999999875 9999999997 5555 66766 6654
Q ss_pred ccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccc--eeecCCCCcee--EEEEcCCCCceeeecC-C
Q 010287 387 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES--TTLEASKNPMR--RQVQTPSRPSRPLGSL-S 461 (513)
Q Consensus 387 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~v~--~~~~~~~~~~l~~~~~-d 461 (513)
|++++|+|++.+|++++. +.|++||+++..... ..+..|..++. +++|+|++++|++++. |
T Consensus 217 -------------v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d 282 (343)
T 3lrv_A 217 -------------IKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNES 282 (343)
T ss_dssp -------------EEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTT
T ss_pred -------------EEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCC
Confidence 569999999999999994 599999999874331 22223444444 5999999999999888 9
Q ss_pred CeEEEec---CCCCCccccCCccccccCCeeEEEEeC---CCCEEEEEc-CCcEEE
Q 010287 462 GVVRRVK---GADNSALDANGNAFDFSMKLLHLAWHP---SENSIACAA-SNSLYM 510 (513)
Q Consensus 462 ~~i~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~sp---~~~~la~~~-~~~~~i 510 (513)
+.+++.. ..+.+ . ..++..++|+| +.+.|++++ ++.+.+
T Consensus 283 ~~i~v~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 328 (343)
T 3lrv_A 283 NSLTIYKFDKKTKNW---------T-KDEESALCLQSDTADFTDMDVVCGDGGIAA 328 (343)
T ss_dssp TEEEEEEECTTTCSE---------E-EEEEEECCC----CCCCEEEEEEETTEEEE
T ss_pred CcEEEEEEcccccce---------E-ecCceeEecCccccccceeEEEecCCceEE
Confidence 9999921 11111 1 14566777887 777777555 444444
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1.1e-26 Score=216.31 Aligned_cols=227 Identities=9% Similarity=0.056 Sum_probs=159.5
Q ss_pred eEEEEeccCCCEEEE-E-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287 235 INSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 312 (513)
Q Consensus 235 v~~~~~~~~~~~l~s-~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 312 (513)
+..+++.++++.++. + .|++|++||..+++.... + .+...|.++.++++. ++.+ .|+.|++||+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~--------~-~~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~ 127 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSR--------I-KVDAPVKDLFLSREF---IVVS-YGDVISVFKFG 127 (355)
T ss_dssp CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEE--------E-ECSSCEEEEEECSSE---EEEE-ETTEEEEEESS
T ss_pred eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEE--------E-ECCCceEEEEEcCCE---EEEE-EcCEEEEEECC
Confidence 566778888887754 4 689999999987765432 2 256689999999864 3333 48899999998
Q ss_pred Cc-ccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEE--EeC-CeEEEEEccCCCC---------------
Q 010287 313 QS-ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS--RDY-MTLKLWDINMDSG--------------- 373 (513)
Q Consensus 313 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~--~~~-~~v~iwd~~~~~~--------------- 373 (513)
++ +.. ..+.. +...+++++ .+++. |+. |.|++||+.. +.
T Consensus 128 ~~~~~~----~~~~~---------------~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~-~~~~~~~~~~~~~~~~~ 185 (355)
T 3vu4_A 128 NPWKRI----TDDIR---------------FGGVCEFSN--GLLVYSNEFNLGQIHITKLQS-SGSATTQDQGVQQKAIL 185 (355)
T ss_dssp TTCCBS----SCCEE---------------EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------
T ss_pred CCceee----EEecc---------------CCceEEEEc--cEEEEeCCCcCcEEEEEECCC-CCccccccccccccccC
Confidence 86 432 22221 234456666 56665 344 9999999986 33
Q ss_pred C-eeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCc-EEEEecCCCCccceeec-C-CCCceeEEEEc
Q 010287 374 P-VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL-FRVFGCSEGSAESTTLE-A-SKNPMRRQVQT 449 (513)
Q Consensus 374 ~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~-~-~~~~v~~~~~~ 449 (513)
+ +..+.+|... |++++|+|++++|++|+.|++ |++||+.++. ....+. + |..+|.+++|+
T Consensus 186 p~~~~~~~h~~~---------------v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~-~~~~~~~g~h~~~v~~~~~s 249 (355)
T 3vu4_A 186 GKGVLIKAHTNP---------------IKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV-LVREFRRGLDRADVVDMKWS 249 (355)
T ss_dssp -CCEEECCCSSC---------------EEEEEECTTSSEEEEEETTCSEEEEEETTTCC-EEEEEECTTCCSCEEEEEEC
T ss_pred cccEEEEccCCc---------------eEEEEECCCCCEEEEEeCCCCEEEEEECCCCc-EEEEEEcCCCCCcEEEEEEC
Confidence 2 5667777655 569999999999999999998 9999999884 446666 5 99999999999
Q ss_pred CCCCceeeecCCCeEEEecCCCCC--c-cccCC----cc-------------ccccCCeeEEEEeCCCCEEEEEc-CCcE
Q 010287 450 PSRPSRPLGSLSGVVRRVKGADNS--A-LDANG----NA-------------FDFSMKLLHLAWHPSENSIACAA-SNSL 508 (513)
Q Consensus 450 ~~~~~l~~~~~d~~i~~~~~~~~~--~-~~~~~----~~-------------~~~~~~i~~~~~sp~~~~la~~~-~~~~ 508 (513)
|++++|++++.|+.|++.+..... . ..+.. .. .........++|+||+++|++++ ++.+
T Consensus 250 ~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~ 329 (355)
T 3vu4_A 250 TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMI 329 (355)
T ss_dssp TTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEE
T ss_pred CCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeE
Confidence 999999999999999992111110 0 00000 00 01122347799999999999887 5555
Q ss_pred EEEe
Q 010287 509 YMYY 512 (513)
Q Consensus 509 ~i~~ 512 (513)
.+|.
T Consensus 330 ~~~~ 333 (355)
T 3vu4_A 330 ETFK 333 (355)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=6.1e-27 Score=224.96 Aligned_cols=280 Identities=9% Similarity=0.051 Sum_probs=209.1
Q ss_pred cccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccc
Q 010287 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (513)
Q Consensus 33 ~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (513)
.....+.+++|+|++.++++++.++.|++||+.+++.. .......+.+|.
T Consensus 120 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~------------------~~~~~~~~~~~~------------ 169 (433)
T 3bws_A 120 KTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV------------------RLSPPEKYKKKL------------ 169 (433)
T ss_dssp ECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEE------------------EECCCHHHHTTC------------
T ss_pred cCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEe------------------eecCcccccccC------------
Confidence 34456779999998888899999999999998766531 000011345666
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (513)
..|.+++|. +++.++++++.|+.|++||+++++....
T Consensus 170 ~~v~~~~~~--~~~~~~~s~~~d~~v~~~d~~~~~~~~~----------------------------------------- 206 (433)
T 3bws_A 170 GFVETISIP--EHNELWVSQMQANAVHVFDLKTLAYKAT----------------------------------------- 206 (433)
T ss_dssp CEEEEEEEG--GGTEEEEEEGGGTEEEEEETTTCCEEEE-----------------------------------------
T ss_pred CceeEEEEc--CCCEEEEEECCCCEEEEEECCCceEEEE-----------------------------------------
Confidence 789999994 4777999999999999999987654332
Q ss_pred CCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEE-E-cCCeEEEEEcCCCcceeeec
Q 010287 193 ASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIV 270 (513)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~-~d~~i~vwd~~~~~~~~~~~ 270 (513)
+..|...+.+++|+|+++.+++ + .++.|++||+++++....
T Consensus 207 -----------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~-- 249 (433)
T 3bws_A 207 -----------------------------------VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK-- 249 (433)
T ss_dssp -----------------------------------EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--
T ss_pred -----------------------------------EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE--
Confidence 1245567899999999998854 5 599999999986654322
Q ss_pred ccCccccccccCCeEEEEEeCCCCeEEEEEe--------CCCcEEEEEcCCcccccccceeeccccCCCCcccccccccc
Q 010287 271 DVKPANMEDLTEVITSAEFHPTHCNMLAYSS--------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 342 (513)
Q Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (513)
+.. ...+.+++|+|++ +.+++++ .|+.|++||+++++.. ..+ .|...
T Consensus 250 ------~~~-~~~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~----~~~-------------~~~~~ 304 (433)
T 3bws_A 250 ------TDK-IGLPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEKLI----DTI-------------GPPGN 304 (433)
T ss_dssp ------CCC-CSEEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTEEE----EEE-------------EEEEC
T ss_pred ------ecC-CCCceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCcEE----eec-------------cCCCC
Confidence 222 3458999999998 7777777 5889999999887642 221 12246
Q ss_pred EEEEEEeecCCEEEE-EeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC---
Q 010287 343 ISDIKFARNGRHILS-RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY--- 417 (513)
Q Consensus 343 v~~i~~sp~~~~l~~-~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--- 417 (513)
+.+++|+|+++.++. +.. +.|++||+.. ++.+..+..... +..++|+|++++|++++.
T Consensus 305 ~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~-~~~~~~~~~~~~----------------~~~~~~s~dg~~l~~~~~~~~ 367 (433)
T 3bws_A 305 KRHIVSGNTENKIYVSDMCCSKIEVYDLKE-KKVQKSIPVFDK----------------PNTIALSPDGKYLYVSCRGPN 367 (433)
T ss_dssp EEEEEECSSTTEEEEEETTTTEEEEEETTT-TEEEEEEECSSS----------------EEEEEECTTSSEEEEEECCCC
T ss_pred cceEEECCCCCEEEEEecCCCEEEEEECCC-CcEEEEecCCCC----------------CCeEEEcCCCCEEEEEecCCC
Confidence 889999999986654 444 9999999985 666655542221 348999999999888776
Q ss_pred ------------CCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeec-CCCeEEE
Q 010287 418 ------------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS-LSGVVRR 466 (513)
Q Consensus 418 ------------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~ 466 (513)
||.|++||+.++ +....+.. ...+..++|+|++++|++++ .|+.|++
T Consensus 368 ~~~~~~~~~g~~dg~v~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v 427 (433)
T 3bws_A 368 HPTEGYLKKGLVLGKVYVIDTTTD-TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRV 427 (433)
T ss_dssp CTTTCTTSCCSSCCEEEEEETTTT-EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEE
T ss_pred ccccccccccccceEEEEEECCCC-cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEE
Confidence 579999999877 34445554 45688999999999998776 4999998
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.1e-26 Score=203.87 Aligned_cols=194 Identities=11% Similarity=0.028 Sum_probs=140.6
Q ss_pred cccCCeEEEEeccCCCEEEEE---cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeC---CCCeEEEEEeCC
Q 010287 230 AHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP---THCNMLAYSSSK 303 (513)
Q Consensus 230 ~h~~~v~~~~~~~~~~~l~s~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~~~d 303 (513)
+|...|.++ ++++.+.++ .|+.|++|++....+... .+..|...++.++|+| ++ .+|++++.|
T Consensus 134 g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~-------s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D 202 (356)
T 2w18_A 134 GNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKE-------NQFLMPPEETILTFAEVQGMQ-EALLGTTIM 202 (356)
T ss_dssp EEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEE-------EEEECCCSSCEEEEEEEETST-TEEEEEETT
T ss_pred CCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceee-------eeccCCCceeeEEeeccCCCC-ceEEEecCC
Confidence 344445554 567777775 399999999965443332 4467888888888888 66 899999999
Q ss_pred CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEE------------EEeC-CeEEEEEccC
Q 010287 304 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL------------SRDY-MTLKLWDINM 370 (513)
Q Consensus 304 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~------------~~~~-~~v~iwd~~~ 370 (513)
++|++||+++++. ++++.++.. +...+.+++|+|+|.+++ +|+. ++|++||..+
T Consensus 203 ~TIkIWDl~TGk~----l~tL~g~~~---------~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 203 NNIVIWNLKTGQL----LKKMHIDDS---------YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT 269 (356)
T ss_dssp SEEEEEETTTCCE----EEEEECCC------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred CcEEEEECCCCcE----EEEEcCCCc---------ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence 9999999999886 455543211 124688889999999874 4554 8999999986
Q ss_pred CCCCeeeee-----cccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCcee-
Q 010287 371 DSGPVATFQ-----VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR- 444 (513)
Q Consensus 371 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~- 444 (513)
++.+..+. +|... .+..+.++.++++++.|++|+|||+.++ +...++++|...+.
T Consensus 270 -gk~l~v~~~~~p~Gh~~~-----------------~lsg~~sg~~lASgS~DgTIkIWDl~tG-k~l~tL~gH~~~vvs 330 (356)
T 2w18_A 270 -TLSVGVMLYCLPPGQAGR-----------------FLEGDVKDHCAAAILTSGTIAIWDLLLG-QCTALLPPVSDQHWS 330 (356)
T ss_dssp -TEEEEEEEECCCTTCCCC-----------------EEEEEEETTEEEEEETTSCEEEEETTTC-SEEEEECCC--CCCC
T ss_pred -CEEEEEEEeeccCCCcce-----------------eEccccCCCEEEEEcCCCcEEEEECCCC-cEEEEecCCCCCeEE
Confidence 66655442 22211 1223334788999999999999999988 55578888887655
Q ss_pred EEEEcCCCCceeeecCCCeEEE
Q 010287 445 RQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 445 ~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.++|+|++++|++|+.|++|++
T Consensus 331 ~vafSPDG~~LaSGS~D~TIkl 352 (356)
T 2w18_A 331 FVKWSGTDSHLLAGQKDGNIFV 352 (356)
T ss_dssp EEEECSSSSEEEEECTTSCEEE
T ss_pred EEEECCCCCEEEEEECCCcEEE
Confidence 5899999999999999999999
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=1.6e-25 Score=212.07 Aligned_cols=259 Identities=8% Similarity=0.098 Sum_probs=194.2
Q ss_pred CEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeecCCCc
Q 010287 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA 127 (513)
Q Consensus 48 ~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 127 (513)
.++++++.|+.|++||+.+++. ...+..| ..+.+++|+| ++.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~-----------------------~~~~~~~-------------~~~~~~~~s~--dg~ 44 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKV-----------------------TATIPVG-------------SNPMGAVISP--DGT 44 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEE-----------------------EEEEECS-------------SSEEEEEECT--TSS
T ss_pred EEEEEcCCCCEEEEEECCCCeE-----------------------EEEeecC-------------CCcceEEECC--CCC
Confidence 4688899999999999876653 2334444 3489999955 776
Q ss_pred eE-EEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCc
Q 010287 128 LY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (513)
Q Consensus 128 ~l-~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 206 (513)
++ ++++.|+.|++||+.+++......
T Consensus 45 ~l~~~~~~d~~i~v~d~~~~~~~~~~~----------------------------------------------------- 71 (391)
T 1l0q_A 45 KVYVANAHSNDVSIIDTATNNVIATVP----------------------------------------------------- 71 (391)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEE-----------------------------------------------------
T ss_pred EEEEECCCCCeEEEEECCCCeEEEEEE-----------------------------------------------------
Confidence 66 566789999999998887544311
Q ss_pred eeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCe
Q 010287 207 LRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 284 (513)
Q Consensus 207 i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i 284 (513)
.+ ..+.+++|+|++++|+.+ .++.|++||+.+++.... +. +...+
T Consensus 72 -----------------------~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~--------~~-~~~~~ 118 (391)
T 1l0q_A 72 -----------------------AG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT--------VK-TGKSP 118 (391)
T ss_dssp -----------------------CS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE--------EE-CSSSE
T ss_pred -----------------------CC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEE--------Ee-CCCCc
Confidence 11 258999999999988654 579999999997654322 22 34568
Q ss_pred EEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEE-EEeC-Ce
Q 010287 285 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL-SRDY-MT 362 (513)
Q Consensus 285 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~-~~~~-~~ 362 (513)
.+++|+|++..++++++.++.|++||+++++. ...+..+ ..+.+++|+|++++++ ++.. +.
T Consensus 119 ~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~----~~~~~~~-------------~~~~~~~~~~dg~~l~~~~~~~~~ 181 (391)
T 1l0q_A 119 LGLALSPDGKKLYVTNNGDKTVSVINTVTKAV----INTVSVG-------------RSPKGIAVTPDGTKVYVANFDSMS 181 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEE----EEEEECC-------------SSEEEEEECTTSSEEEEEETTTTE
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCcE----EEEEecC-------------CCcceEEECCCCCEEEEEeCCCCE
Confidence 99999999944457888899999999988765 2333222 3578999999999885 5554 99
Q ss_pred EEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe---CCCcEEEEecCCCCccceeecCC
Q 010287 363 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS---YSNLFRVFGCSEGSAESTTLEAS 439 (513)
Q Consensus 363 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~ 439 (513)
|++||++. ++....+..+.. +..++|+|++++|++++ .++.|++||+.++ +....+..+
T Consensus 182 v~~~d~~~-~~~~~~~~~~~~----------------~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~ 243 (391)
T 1l0q_A 182 ISVIDTVT-NSVIDTVKVEAA----------------PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-KITARIPVG 243 (391)
T ss_dssp EEEEETTT-TEEEEEEECSSE----------------EEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-EEEEEEECC
T ss_pred EEEEECCC-CeEEEEEecCCC----------------ccceEECCCCCEEEEEecCcCCCcEEEEECCCC-eEEEEEecC
Confidence 99999986 655555543221 34899999999999887 6899999999977 444566665
Q ss_pred CCceeEEEEcCCCCce-eeecCCCeEEE
Q 010287 440 KNPMRRQVQTPSRPSR-PLGSLSGVVRR 466 (513)
Q Consensus 440 ~~~v~~~~~~~~~~~l-~~~~~d~~i~~ 466 (513)
.. +..++++|+++++ ++++.|+.|++
T Consensus 244 ~~-~~~~~~s~dg~~l~~s~~~d~~v~v 270 (391)
T 1l0q_A 244 PD-PAGIAVTPDGKKVYVALSFXNTVSV 270 (391)
T ss_dssp SS-EEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CC-ccEEEEccCCCEEEEEcCCCCEEEE
Confidence 54 6789999999977 67789999999
No 125
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=1.3e-26 Score=220.12 Aligned_cols=219 Identities=14% Similarity=0.115 Sum_probs=158.7
Q ss_pred ccccCCeEEEEeccCCCEEEEE-cC---CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEE-EEeCC
Q 010287 229 HAHDYHINSISNNSDGETFISA-DD---LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSK 303 (513)
Q Consensus 229 ~~h~~~v~~~~~~~~~~~l~s~-~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~d 303 (513)
.+|...+.+++|+|+++.|+++ .+ ..|++||+++++.. .+..|...+.+++|+|++ +.|+ +++.+
T Consensus 175 ~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~---------~l~~~~~~~~~~~~spdg-~~la~~~~~~ 244 (415)
T 2hqs_A 175 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---------QVASFPRHNGAPAFSPDG-SKLAFALSKT 244 (415)
T ss_dssp EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---------EEECCSSCEEEEEECTTS-SEEEEEECTT
T ss_pred eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE---------EeecCCCcccCEEEcCCC-CEEEEEEecC
Confidence 4566789999999999999987 45 49999999876543 335567789999999999 6555 67666
Q ss_pred Cc--EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--C--eEEEEEccCCCCCeee
Q 010287 304 GS--IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVAT 377 (513)
Q Consensus 304 g~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~--~v~iwd~~~~~~~~~~ 377 (513)
+. |.+||+.+++. .. +..|...+.+++|+|||++|+.+++ + .|++||+.. ++ ...
T Consensus 245 g~~~i~~~d~~~~~~-----~~------------l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~-~~-~~~ 305 (415)
T 2hqs_A 245 GSLNLYVMDLASGQI-----RQ------------VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-GA-PQR 305 (415)
T ss_dssp SSCEEEEEETTTCCE-----EE------------CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SC-CEE
T ss_pred CCceEEEEECCCCCE-----Ee------------CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC-CC-EEE
Confidence 65 99999987653 11 2334467999999999998887653 4 677788874 43 333
Q ss_pred eecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC---CcEEEEecCCCCccceeecCCCCceeEEEEcCCCCc
Q 010287 378 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS 454 (513)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 454 (513)
+..+... +..++|+|||++|++++.+ ..|++||+.++.. ..+..+. .+..+.|+|+++.
T Consensus 306 l~~~~~~---------------~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~spdg~~ 367 (415)
T 2hqs_A 306 ITWEGSQ---------------NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAPNGTM 367 (415)
T ss_dssp CCCSSSE---------------EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEECTTSSE
T ss_pred EecCCCc---------------ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE--EEecCCC-CcCCeEEcCCCCE
Confidence 3333322 3479999999999987754 5899999997743 3444554 7889999999999
Q ss_pred eeeecCCC---eEEEecCCCCCccccCCccccccCCeeEEEEeCCCC
Q 010287 455 RPLGSLSG---VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN 498 (513)
Q Consensus 455 l~~~~~d~---~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~ 498 (513)
|++++.++ .+.+..... ........|.+.|.+++|+|...
T Consensus 368 l~~~s~~~~~~~l~~~d~~g----~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 368 VIYSSSQGMGSVLNLVSTDG----RFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEEEETTEEEEEEEETTS----CCEEECCCSSSEEEEEEECCCCC
T ss_pred EEEEEcCCCccEEEEEECCC----CcEEEeeCCCCCCcCCccccccc
Confidence 99988776 566622111 11123335788999999999854
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=2.1e-25 Score=211.19 Aligned_cols=269 Identities=12% Similarity=0.136 Sum_probs=193.1
Q ss_pred cccccccccceeccccccccccccccEEEEEEcCCCCEE-EeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcc
Q 010287 12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (513)
Q Consensus 12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~l-atg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (513)
.....|++.. ++. ...+.+...+.+++|+|+|++| ++++.|+.|++||+.+++.
T Consensus 12 ~~v~v~d~~~--~~~--~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~--------------------- 66 (391)
T 1l0q_A 12 DNISVIDVTS--NKV--TATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV--------------------- 66 (391)
T ss_dssp TEEEEEETTT--TEE--EEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE---------------------
T ss_pred CEEEEEECCC--CeE--EEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE---------------------
Confidence 3455676654 111 1223344569999999999976 6777999999999876553
Q ss_pred eEeccccCCCCcccccccccccccceeEEEeecCCCceEEEe-ecCCeEEEEEccCceeeeeeccccCCCcccCCCCccc
Q 010287 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (513)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~-s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (513)
...+..+ ..+.+++|+| ++.+++++ +.|+.|++||+.+++......
T Consensus 67 --~~~~~~~-------------~~v~~~~~sp--dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~---------------- 113 (391)
T 1l0q_A 67 --IATVPAG-------------SSPQGVAVSP--DGKQVYVTNMASSTLSVIDTTSNTVAGTVK---------------- 113 (391)
T ss_dssp --EEEEECS-------------SSEEEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEEE----------------
T ss_pred --EEEEECC-------------CCccceEECC--CCCEEEEEECCCCEEEEEECCCCeEEEEEe----------------
Confidence 1222222 4599999955 77777655 567999999999876543211
Q ss_pred CcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEE-E
Q 010287 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-I 248 (513)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~ 248 (513)
+...+.+++|+|+++.+ +
T Consensus 114 -------------------------------------------------------------~~~~~~~~~~s~dg~~l~~ 132 (391)
T 1l0q_A 114 -------------------------------------------------------------TGKSPLGLALSPDGKKLYV 132 (391)
T ss_dssp -------------------------------------------------------------CSSSEEEEEECTTSSEEEE
T ss_pred -------------------------------------------------------------CCCCcceEEECCCCCEEEE
Confidence 12347899999999987 5
Q ss_pred EE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287 249 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 327 (513)
Q Consensus 249 s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 327 (513)
++ .++.|++||+.+++.... +.. ...+.+++|+|++..++++++.++.|++||+++++. ...+.
T Consensus 133 ~~~~~~~v~~~d~~~~~~~~~--------~~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~----~~~~~-- 197 (391)
T 1l0q_A 133 TNNGDKTVSVINTVTKAVINT--------VSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV----IDTVK-- 197 (391)
T ss_dssp EETTTTEEEEEETTTTEEEEE--------EEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE----EEEEE--
T ss_pred EeCCCCEEEEEECCCCcEEEE--------Eec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE----EEEEe--
Confidence 66 699999999987654322 222 345799999999944457888899999999988764 22222
Q ss_pred cCCCCccccccccccEEEEEEeecCCEEEEEe----CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeE
Q 010287 328 EAPGTRSFFTEIIASISDIKFARNGRHILSRD----YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 403 (513)
Q Consensus 328 ~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~----~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (513)
+...+.+++|+|++++|++++ ++.|++||+.. ++.+..+..+.. +..+
T Consensus 198 -----------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~----------------~~~~ 249 (391)
T 1l0q_A 198 -----------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT-NKITARIPVGPD----------------PAGI 249 (391)
T ss_dssp -----------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT-TEEEEEEECCSS----------------EEEE
T ss_pred -----------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC-CeEEEEEecCCC----------------ccEE
Confidence 224689999999999888764 49999999986 666666665543 2379
Q ss_pred EEeCCCCEE-EEEeCCCcEEEEecCCCCccceeecCCCCce
Q 010287 404 CLSGDGGRV-ATGSYSNLFRVFGCSEGSAESTTLEASKNPM 443 (513)
Q Consensus 404 ~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v 443 (513)
+|+|++++| ++++.|+.|++||+.++ .....+..+..+.
T Consensus 250 ~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~~~~~~~ 289 (391)
T 1l0q_A 250 AVTPDGKKVYVALSFXNTVSVIDTATN-TITATMAVGKNPY 289 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECSSSEE
T ss_pred EEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEECCcCCC
Confidence 999999987 56788999999999987 4445666665543
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=2.5e-25 Score=217.50 Aligned_cols=327 Identities=10% Similarity=0.064 Sum_probs=228.8
Q ss_pred EEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEe
Q 010287 42 EFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWC 121 (513)
Q Consensus 42 ~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~ 121 (513)
+|+|++.++++++.+++|.+||..+++. ...+..+ ..+..++|+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~-----------------------~~~i~~g-------------~~~~~v~~s 187 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKI-----------------------VKVIDTG-------------YAVHISRMS 187 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCE-----------------------EEEEECS-------------TTEEEEEEC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceE-----------------------EEEEecC-------------cccceEEEC
Confidence 3899999999999999999999876653 1333322 227889995
Q ss_pred ecCCCceEEEeecCCeEEEEEc--cCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCc
Q 010287 122 QSANSALYLLSTNDKTIKLWKV--QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSF 199 (513)
Q Consensus 122 ~~~~~~~l~s~s~d~~i~vw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 199 (513)
++++++++++.|++|++||+ .++++.....
T Consensus 188 --pdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~---------------------------------------------- 219 (543)
T 1nir_A 188 --ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK---------------------------------------------- 219 (543)
T ss_dssp --TTSCEEEEEETTSEEEEEETTSSSCEEEEEEE----------------------------------------------
T ss_pred --CCCCEEEEECCCCeEEEEECcCCCCcEEEEEe----------------------------------------------
Confidence 48889999999999999999 6655432211
Q ss_pred CCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc----CCCEEEEE--cCCeEEEEEcCCCcceeeecccC
Q 010287 200 PPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS----DGETFISA--DDLRINLWNLEISNQSFNIVDVK 273 (513)
Q Consensus 200 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~ 273 (513)
+...+..++|+| ++++++++ .+++|.+||..+.+....+ ...
T Consensus 220 -------------------------------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i-~~~ 267 (543)
T 1nir_A 220 -------------------------------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV-STR 267 (543)
T ss_dssp -------------------------------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE-ECC
T ss_pred -------------------------------cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceee-ccc
Confidence 123378899999 99999988 3899999999876544322 111
Q ss_pred cccc---cccc-CCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287 274 PANM---EDLT-EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 349 (513)
Q Consensus 274 ~~~~---~~~~-~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 349 (513)
.... ..|. ..+..+.++|+++.++++...++.|.+||+.+..... ...+. +...+.++.|+
T Consensus 268 g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~--~~~i~-------------~~~~~~~~~~s 332 (543)
T 1nir_A 268 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT--VTSIG-------------AAPFLHDGGWD 332 (543)
T ss_dssp EECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE--EEEEE-------------CCSSCCCEEEC
T ss_pred CcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce--eEEec-------------cCcCccCceEC
Confidence 0000 1133 3789999999887888888999999999998765321 11221 12457789999
Q ss_pred ecCCEEEEEe-C-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEE-EeCC-CCEEEEEe-CCCcEEEE
Q 010287 350 RNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC-LSGD-GGRVATGS-YSNLFRVF 424 (513)
Q Consensus 350 p~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~-~~~l~~~~-~dg~i~vw 424 (513)
|+|+++++++ . ++|.+||+.+ ++.+..+........ . .... ++|+ +.+++++. .|++|.+|
T Consensus 333 pdg~~l~va~~~~~~v~v~D~~t-g~l~~~i~~g~~ph~--------g-----~g~~~~~p~~g~~~~s~~~~d~~V~v~ 398 (543)
T 1nir_A 333 SSHRYFMTAANNSNKVAVIDSKD-RRLSALVDVGKTPHP--------G-----RGANFVHPKYGPVWSTSHLGDGSISLI 398 (543)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSBCC--------T-----TCEEEEETTTEEEEEEEBSSSSEEEEE
T ss_pred CCCCEEEEEecCCCeEEEEECCC-CeEEEeeccCCCCCC--------C-----CCcccCCCCCccEEEeccCCCceEEEE
Confidence 9999877654 3 8999999996 777777664211100 0 0222 4677 66667765 68999999
Q ss_pred ecCCC------CccceeecCCCCceeEEEEcCCCCceeeec-------CCCeEEEecCCCCCcc-ccC-C----cccccc
Q 010287 425 GCSEG------SAESTTLEASKNPMRRQVQTPSRPSRPLGS-------LSGVVRRVKGADNSAL-DAN-G----NAFDFS 485 (513)
Q Consensus 425 d~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~d~~i~~~~~~~~~~~-~~~-~----~~~~~~ 485 (513)
|+.+. .+.+.+++.|...+..+.++|++++|++++ .++.|.+.+....... +.. . ...++.
T Consensus 399 d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~ 478 (543)
T 1nir_A 399 GTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA 478 (543)
T ss_dssp ECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC
T ss_pred EeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCC
Confidence 99872 245588888888888999999999999987 2678998333222210 110 0 012457
Q ss_pred CCeeEEEEeCCCCEEEEE--c----CCcEEEEeC
Q 010287 486 MKLLHLAWHPSENSIACA--A----SNSLYMYYA 513 (513)
Q Consensus 486 ~~i~~~~~sp~~~~la~~--~----~~~~~i~~~ 513 (513)
..+.+++|+|+|+.|.++ + ++.|.||..
T Consensus 479 ~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 479 KRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp CEEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred CceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence 889999999999998865 2 588888863
No 128
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=1.1e-25 Score=238.87 Aligned_cols=388 Identities=9% Similarity=0.000 Sum_probs=243.1
Q ss_pred ccccccccEEEEEEcCCCCEEEeecCC------CcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDRG------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEF 103 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 103 (513)
....|...|.+++|||||++||+++.+ ..|++|++.+++. ..+..|.
T Consensus 47 ~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~------------------------~~lt~~~--- 99 (1045)
T 1k32_A 47 KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI------------------------KRITYFS--- 99 (1045)
T ss_dssp EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE------------------------EECCCCC---
T ss_pred EeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe------------------------EEcccCC---
Confidence 455789999999999999999988643 3688999766542 3455565
Q ss_pred cccccccccccc-------eeEEEeecCCCceEEEeecC------CeEEEEEccCceeeeeeccccCCCc----ccCCCC
Q 010287 104 DYLKSLEIEEKI-------NKIRWCQSANSALYLLSTND------KTIKLWKVQEKKVKKVFDWNVHPEK----AAGNGP 166 (513)
Q Consensus 104 ~~~~~~~~~~~i-------~~i~~~~~~~~~~l~s~s~d------~~i~vw~~~~~~~~~~~~~~~~~~~----~~~~~~ 166 (513)
..+ ..++|+| |++.+++++.+ ..|.+|++.++....+......... .+..+.
T Consensus 100 ---------~~~~~~~~~~~~~~~Sp--Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~ 168 (1045)
T 1k32_A 100 ---------GKSTGRRMFTDVAGFDP--DGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGR 168 (1045)
T ss_dssp ---------EEEETTEECSEEEEECT--TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEE
T ss_pred ---------CcccccccccccccCCC--CCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEec
Confidence 555 8999955 77766776644 4588888887765443221110000 000000
Q ss_pred cc-------cC-cccccCceeccCCCccccccC--------CCCC-CCCcCCCCCCceeceeeccCCcccccceeeEeec
Q 010287 167 IF-------GS-HVSAIPKSYMANGGCGERNFG--------CASN-DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAH 229 (513)
Q Consensus 167 ~~-------~~-~~~~~~~~~~~~g~~~~~~~~--------~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 229 (513)
.. .. ......+.+.+++.....+.. .+.. .+.++...++..++|.+...... .+ .+.
T Consensus 169 ~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~-----~~-~l~ 242 (1045)
T 1k32_A 169 NTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKD-----LR-KHT 242 (1045)
T ss_dssp SCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCS-----CE-ECC
T ss_pred cCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCc-----ce-Eec
Confidence 00 00 000000111111100000000 0001 22344456677888877532210 11 123
Q ss_pred cccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccC---ccccccccCCeEEEEEe-CCCCeEEEEEeCCCc
Q 010287 230 AHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVK---PANMEDLTEVITSAEFH-PTHCNMLAYSSSKGS 305 (513)
Q Consensus 230 ~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~dg~ 305 (513)
.|. .+...+|+|+|+.|+.+.++.|++|++.. .....+.... ......|...+.+++|+ |++ +.+++++ ++.
T Consensus 243 ~~~-~~~~~~~SpDG~~la~~~~~~i~~~d~~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~~-~~~ 318 (1045)
T 1k32_A 243 SFT-DYYPRHLNTDGRRILFSKGGSIYIFNPDT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFVS-RGQ 318 (1045)
T ss_dssp CCC-SSCEEEEEESSSCEEEEETTEEEEECTTT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEEE-TTE
T ss_pred CCC-CcceeeEcCCCCEEEEEeCCEEEEecCCc-eEeeeeccCcccccccccccccccceeeecCCCC-CEEEEEE-cCE
Confidence 333 36678999999999998899999999843 3222211000 00111245578999999 999 7777776 889
Q ss_pred EEEEEcCCcccccccceeeccccCCCCccccccccc-cEEEEEEeecCCEEEEEeC-CeEE-EEEccCCCCCeeeeeccc
Q 010287 306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA-SISDIKFARNGRHILSRDY-MTLK-LWDINMDSGPVATFQVHE 382 (513)
Q Consensus 306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~sp~~~~l~~~~~-~~v~-iwd~~~~~~~~~~~~~~~ 382 (513)
|.+|++..+... .+ ..|.. .+..++|+ ||+.|+.+++ ..+. +||+.. ++ ...+..+.
T Consensus 319 i~~~~~~~~~~~-----~~------------~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~-~~-~~~l~~~~ 378 (1045)
T 1k32_A 319 AFIQDVSGTYVL-----KV------------PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT-GK-AEKFEENL 378 (1045)
T ss_dssp EEEECTTSSBEE-----EC------------SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT-CC-EEECCCCC
T ss_pred EEEEcCCCCceE-----Ec------------cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC-CC-ceEecCCc
Confidence 999998766531 11 22234 68999999 9999998776 7788 889874 33 33333333
Q ss_pred ccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCC
Q 010287 383 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG 462 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 462 (513)
.. +..++|+|||++|++++.++.|++||+.++ .....+..|...+..++|+|+|++|++++.++
T Consensus 379 ~~---------------~~~~~~SpDG~~la~~~~~~~v~~~d~~tg-~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~ 442 (1045)
T 1k32_A 379 GN---------------VFAMGVDRNGKFAVVANDRFEIMTVDLETG-KPTVIERSREAMITDFTISDNSRFIAYGFPLK 442 (1045)
T ss_dssp CS---------------EEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECSSSCCCCEEECTTSCEEEEEEEEC
T ss_pred cc---------------eeeeEECCCCCEEEEECCCCeEEEEECCCC-ceEEeccCCCCCccceEECCCCCeEEEEecCc
Confidence 22 448999999999999999999999999987 34455667888899999999999999887654
Q ss_pred ----------eEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcC
Q 010287 463 ----------VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS 505 (513)
Q Consensus 463 ----------~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~ 505 (513)
.|++ ++..... ......|...+..++|+|||++|++++.
T Consensus 443 ~~~~~~~~~~~i~l---~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 443 HGETDGYVMQAIHV---YDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp SSTTCSCCEEEEEE---EETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred cccccCCCCCeEEE---EECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEec
Confidence 7777 2222111 1223346777899999999999997764
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=3.4e-25 Score=227.61 Aligned_cols=326 Identities=7% Similarity=0.042 Sum_probs=215.2
Q ss_pred cccEEEEEEcCCCCEEEeecC-CC-----cEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcc-----
Q 010287 35 VDIISAIEFDKSGDHLATGDR-GG-----RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEF----- 103 (513)
Q Consensus 35 ~~~V~~v~~sp~g~~latg~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~----- 103 (513)
...|++++|||||++||+++. |+ .|++||+.+++... . .....+.+..
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~----~-----------------~~~~~~~~~~~~~~~ 94 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL----L-----------------VDSKVVLPGTETLSD 94 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE----E-----------------ECGGGTC--------
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE----c-----------------cchhhcccccccccc
Confidence 567999999999999999998 88 89999987765310 0 0000000000
Q ss_pred --ccccc---ccccccceeEEEeecCCCceEEEeecCCeEEEEEccCc---eeeeeeccccCCCcccCCCCcccCccccc
Q 010287 104 --DYLKS---LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK---KVKKVFDWNVHPEKAAGNGPIFGSHVSAI 175 (513)
Q Consensus 104 --~~~~~---~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (513)
...+. +.....|.+++|+| |+++|++++. +.|++||+.++ ....
T Consensus 95 ~~~~~~~~~~~~~~~~v~~~~~Sp--Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~------------------------- 146 (741)
T 2ecf_A 95 EEKARRERQRIAAMTGIVDYQWSP--DAQRLLFPLG-GELYLYDLKQEGKAAVRQ------------------------- 146 (741)
T ss_dssp ------------CCEESCCCEECT--TSSEEEEEET-TEEEEEESSSCSTTSCCB-------------------------
T ss_pred hhhhhhhhhhhccccCcceeEECC--CCCEEEEEeC-CcEEEEECCCCCcceEEE-------------------------
Confidence 00000 00003488999954 8888888876 99999999876 3211
Q ss_pred CceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeE
Q 010287 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRI 255 (513)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i 255 (513)
+..|...+.+++|+|||++|+.+.++.|
T Consensus 147 ----------------------------------------------------l~~~~~~~~~~~~SPDG~~la~~~~~~i 174 (741)
T 2ecf_A 147 ----------------------------------------------------LTHGEGFATDAKLSPKGGFVSFIRGRNL 174 (741)
T ss_dssp ----------------------------------------------------CCCSSSCEEEEEECTTSSEEEEEETTEE
T ss_pred ----------------------------------------------------cccCCcccccccCCCCCCEEEEEeCCcE
Confidence 1244456889999999999999877899
Q ss_pred EEEEcCCCcceeeecccCccccccccC----------------CeEEEEEeCCCCeEEEEEeCCC---------------
Q 010287 256 NLWNLEISNQSFNIVDVKPANMEDLTE----------------VITSAEFHPTHCNMLAYSSSKG--------------- 304 (513)
Q Consensus 256 ~vwd~~~~~~~~~~~~~~~~~~~~~~~----------------~i~~~~~~~~~~~~l~~~~~dg--------------- 304 (513)
++||+.+++.. .+. ..+.. .+..+.|+||+ +.|++++.|+
T Consensus 175 ~~~d~~~g~~~-~~~-------~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~ 245 (741)
T 2ecf_A 175 WVIDLASGRQM-QLT-------ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADR 245 (741)
T ss_dssp EEEETTTTEEE-ECC-------CCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSC
T ss_pred EEEecCCCCEE-Eec-------cCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCc
Confidence 99999865432 211 11111 24789999999 7788877665
Q ss_pred ------------------cEEEEEcCC-cccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe------
Q 010287 305 ------------------SIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD------ 359 (513)
Q Consensus 305 ------------------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~------ 359 (513)
.|.+||+.+ ++.. ..... ..|...+..++| |||++|+.+.
T Consensus 246 ~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~----~~~~~----------~~~~~~~~~~~~-pDg~~l~~~~~~~~~~ 310 (741)
T 2ecf_A 246 TDVIEQRYPAAGDANVQVKLGVISPAEQAQTQ----WIDLG----------KEQDIYLARVNW-RDPQHLSFQRQSRDQK 310 (741)
T ss_dssp EEEEEEECCBTTSCCCEEEEEEECSSTTCCCE----EECCC----------SCSSEEEEEEEE-EETTEEEEEEEETTSS
T ss_pred ccceEeecCCCCCCCCeeEEEEEECCCCCceE----EecCC----------CCcceEEEEEEe-CCCCEEEEEEecccCC
Confidence 788888876 6531 11100 124467999999 9999998642
Q ss_pred CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCC
Q 010287 360 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS 439 (513)
Q Consensus 360 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 439 (513)
+..|++||+.+ ++....+..+.... +..+..++|+|||+++++++.||.++||.+..... ...+..+
T Consensus 311 ~~~i~~~d~~~-g~~~~~~~~~~~~~-----------~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~ 377 (741)
T 2ecf_A 311 KLDLVEVTLAS-NQQRVLAHETSPTW-----------VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG 377 (741)
T ss_dssp EEEEEEEETTT-CCEEEEEEEECSSC-----------CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS
T ss_pred eEEEEEEECCC-CceEEEEEcCCCCc-----------CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec
Confidence 26899999986 66555554433210 00123789999999989999999888887653333 5667777
Q ss_pred CCceeEE-EEcCCCCcee-eecCCC--eEEE--ecC-CCCCccccCCccccccCCeeEEEEeCCCCEEEEEc
Q 010287 440 KNPMRRQ-VQTPSRPSRP-LGSLSG--VVRR--VKG-ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 504 (513)
Q Consensus 440 ~~~v~~~-~~~~~~~~l~-~~~~d~--~i~~--~~~-~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 504 (513)
...+..+ .|+|+++.|+ +++.++ .+++ ... ... ...+.....+..++||||+++|+...
T Consensus 378 ~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~------~~~l~~~~~~~~~~~spdg~~l~~~~ 443 (741)
T 2ecf_A 378 NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQ------PQRLSKAPGMHSASFARNASVYVDSW 443 (741)
T ss_dssp SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCC------CEECCCSCSEEEEEECTTSSEEEEEE
T ss_pred ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCC------eeecccCCCceEEEECCCCCEEEEEe
Confidence 7778777 5999999775 445554 6666 111 110 11122256688999999999988553
No 130
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=1.5e-24 Score=192.18 Aligned_cols=215 Identities=9% Similarity=0.087 Sum_probs=139.9
Q ss_pred ccCCeEEEEeccC----CCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe--CCC
Q 010287 231 HDYHINSISNNSD----GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKG 304 (513)
Q Consensus 231 h~~~v~~~~~~~~----~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg 304 (513)
+...|++++++|+ ++.+++++ ..+.+|++.++ +++.+++ .|+
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g-~~~~v~~l~~g-------------------------------~lv~ss~~g~d~ 157 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSG-NIKAVLGLTKR-------------------------------RLVSSSGTLSDQ 157 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEE-EEEEEEEETTT-------------------------------EEEEEESSSTTC
T ss_pred cccceEEEEECCCccccccEEEeCC-CeEEEEecCCC-------------------------------cEEEecccCCCC
Confidence 3456889999998 88888764 23667765422 3333322 356
Q ss_pred cEEEEEcCC-cccccccceeeccccCCCCccccccccccEEEEEEee---cCCEEEEEeC-CeEEEEEccCCCCCeeeee
Q 010287 305 SIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILSRDY-MTLKLWDINMDSGPVATFQ 379 (513)
Q Consensus 305 ~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp---~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~ 379 (513)
.|++|++.. ++. ... +.+|...+..++|+| ++.+|+++++ ++|+|||+++ ++.++++.
T Consensus 158 ~V~~~~~s~dG~~----~~s------------~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T-Gk~l~tL~ 220 (356)
T 2w18_A 158 QVEVMTFAEDGGG----KEN------------QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT-GQLLKKMH 220 (356)
T ss_dssp EEEEEEECTTSCE----EEE------------EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT-CCEEEEEE
T ss_pred cEEEEEECCCCce----eee------------eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC-CcEEEEEc
Confidence 666666532 322 111 233446788899998 7799999875 9999999997 88999987
Q ss_pred cccccccccccccccCCccceeeEEEeCCCCEE------------EEEeCCCcEEEEecCCCCccceee-----cCCCCc
Q 010287 380 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV------------ATGSYSNLFRVFGCSEGSAESTTL-----EASKNP 442 (513)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l------------~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~ 442 (513)
+|..... .+..++|+|+|+++ ++|+.|++|++||..++... ..+ .+|...
T Consensus 221 g~~~~v~------------~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l-~v~~~~~p~Gh~~~ 287 (356)
T 2w18_A 221 IDDSYQA------------SVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSV-GVMLYCLPPGQAGR 287 (356)
T ss_dssp CCC---C------------CCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEE-EEEEECCCTTCCCC
T ss_pred CCCccee------------eeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEE-EEEEeeccCCCcce
Confidence 6543221 13477899999876 56788999999999987433 222 355544
Q ss_pred eeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCee-EEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 443 MRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLL-HLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 443 v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
+....+ ++.++|+++.|++|+| |+....+......+|...+. .++|||||++||+|+ |+.++||.
T Consensus 288 ~lsg~~--sg~~lASgS~DgTIkI---WDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 288 FLEGDV--KDHCAAAILTSGTIAI---WDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEE---EETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred eEcccc--CCCEEEEEcCCCcEEE---EECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence 433333 3778999999999999 65553333334445766554 689999999999998 77899996
No 131
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=2e-24 Score=221.42 Aligned_cols=336 Identities=10% Similarity=0.036 Sum_probs=207.7
Q ss_pred ccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (513)
Q Consensus 36 ~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 115 (513)
..+.+++|+|||+++++ +.||+|++||+.+++.. ..+.+|... ...|
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~-----------------------~~~~~~~~~---------~~~v 63 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTST-----------------------VLIEGKKIE---------SLRA 63 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE-----------------------EEECTTTTT---------TTTC
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE-----------------------EEecccccc---------cccc
Confidence 34678999999998877 68999999999877641 223334300 0148
Q ss_pred eeEEEeecCCCceEEEeecC---------CeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287 116 NKIRWCQSANSALYLLSTND---------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (513)
Q Consensus 116 ~~i~~~~~~~~~~l~s~s~d---------~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 186 (513)
.+++|+| |+++|++++.+ +.+.+||+.+++...+..
T Consensus 64 ~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~--------------------------------- 108 (723)
T 1xfd_A 64 IRYEISP--DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP--------------------------------- 108 (723)
T ss_dssp SEEEECT--TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC---------------------------------
T ss_pred ceEEECC--CCCEEEEEecCccceeecceeeEEEEECCCCceEeccC---------------------------------
Confidence 9999955 88899998764 778899998876422110
Q ss_pred ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcce
Q 010287 187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQS 266 (513)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~ 266 (513)
..+|...+..++|+|||+.|+.+.++.|++||+.+++..
T Consensus 109 -----------------------------------------~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~ 147 (723)
T 1xfd_A 109 -----------------------------------------PEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAI 147 (723)
T ss_dssp -----------------------------------------TTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCE
T ss_pred -----------------------------------------CccccccccccEECCCCCEEEEEECCeEEEEECCCCceE
Confidence 013334477889999999999997789999999875532
Q ss_pred eeecccCccc--cccc---------cCCeEEEEEeCCCCeEEEEEeCCC-------------------------------
Q 010287 267 FNIVDVKPAN--MEDL---------TEVITSAEFHPTHCNMLAYSSSKG------------------------------- 304 (513)
Q Consensus 267 ~~~~~~~~~~--~~~~---------~~~i~~~~~~~~~~~~l~~~~~dg------------------------------- 304 (513)
.+....... +.++ ...+.+++|+||+ +.|++++.|+
T Consensus 148 -~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 225 (723)
T 1xfd_A 148 -RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSEN 225 (723)
T ss_dssp -EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCC
T ss_pred -EEecCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCC
Confidence 221000000 0011 1134789999999 7888777543
Q ss_pred ---cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe----C-CeEEEEEccCCCCCee
Q 010287 305 ---SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----Y-MTLKLWDINMDSGPVA 376 (513)
Q Consensus 305 ---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~----~-~~v~iwd~~~~~~~~~ 376 (513)
.|++||+.+++. ...+..+.. ...+...+..++|+|||++|++.. . ..|++||+.+ ++...
T Consensus 226 ~~~~l~~~d~~~~~~----~~~l~~~~~------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-g~~~~ 294 (723)
T 1xfd_A 226 PSISLHVIGLNGPTH----DLEMMPPDD------PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVCTK 294 (723)
T ss_dssp CEEEEEEEESSSSCC----CEECCCCCC------GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCEEE
T ss_pred CeeEEEEEECCCCce----eEEeeCCcc------CCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-CcceE
Confidence 677888776653 122221110 122346789999999999887642 2 6799999986 65554
Q ss_pred eeeccc-ccccccccccccCCccceeeEEEeCCCCEEEE--EeCCC------cEEEEecCCCCcc--ceeecCCCCceeE
Q 010287 377 TFQVHE-HLRPKLCDLYENDSIFDKFECCLSGDGGRVAT--GSYSN------LFRVFGCSEGSAE--STTLEASKNPMRR 445 (513)
Q Consensus 377 ~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg------~i~vwd~~~~~~~--~~~~~~~~~~v~~ 445 (513)
.+..+. ...... ...++|+|||+.|+. +..++ .|++||+..+... ...+......+..
T Consensus 295 ~~~~~~~~~~~~~-----------~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~ 363 (723)
T 1xfd_A 295 KHEDESEAWLHRQ-----------NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTK 363 (723)
T ss_dssp EEEEECSSCCCCC-----------CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEE
T ss_pred EEEeccCCEEecc-----------CCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEe
Confidence 443321 111000 016789999997775 44666 5777773233230 2334333334444
Q ss_pred -EEEcCCCCceeeecCC---CeEEE--ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc
Q 010287 446 -QVQTPSRPSRPLGSLS---GVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 504 (513)
Q Consensus 446 -~~~~~~~~~l~~~~~d---~~i~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 504 (513)
+.|+|+++.|+..+.+ +.+++ .................+...+..++|+||+++|+...
T Consensus 364 ~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 364 ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp EEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred eeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 6899999999766544 66666 21111000001111111466789999999999988653
No 132
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=6e-24 Score=225.61 Aligned_cols=383 Identities=10% Similarity=0.026 Sum_probs=245.4
Q ss_pred ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (513)
Q Consensus 34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (513)
+...+.+.+||| ++||.++. +.|++|++.+++. ..+.+|. .
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~------------------------~~lt~~~------------~ 53 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGST------------------------RKIVSNL------------G 53 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCE------------------------EEEECSS------------S
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcE------------------------EEeeeCC------------C
Confidence 457889999996 58888775 6899999876553 3455677 7
Q ss_pred cceeEEEeecCCCceEEEeecC------CeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287 114 KINKIRWCQSANSALYLLSTND------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (513)
Q Consensus 114 ~i~~i~~~~~~~~~~l~s~s~d------~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 187 (513)
.+.+++|+| ||+.|+.++.+ ..|++|++.+++...+.. +.... .+.. .....++|+|||+.+.
T Consensus 54 ~v~~~~~SP--DG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~---~~~~~--~~~~----~~~~~~~~SpDg~ll~ 122 (1045)
T 1k32_A 54 VINNARFFP--DGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY---FSGKS--TGRR----MFTDVAGFDPDGNLII 122 (1045)
T ss_dssp EEEEEEECT--TSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCC---CCEEE--ETTE----ECSEEEEECTTCCEEE
T ss_pred cccCeEECC--CCCEEEEEEeeccCCCCCeEEEEECCCCCeEEccc---CCCcc--cccc----cccccccCCCCCEEEE
Confidence 899999955 88899988654 479999998887443321 11000 0000 0113678999998331
Q ss_pred cccCCCCCCCCcCCCCCCceeceeeccCCccc-------------------------------------------cccee
Q 010287 188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNL-------------------------------------------VAGCR 224 (513)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------------------------------------------~~~~~ 224 (513)
.. ....+ ......+..|++....... .....
T Consensus 123 ~~--~~~~~----~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~ 196 (1045)
T 1k32_A 123 ST--DAMQP----FSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAF 196 (1045)
T ss_dssp EE--CTTSS----STTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEE
T ss_pred EE--CCcCC----CcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCe
Confidence 10 00000 0011234444432221100 00011
Q ss_pred eEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC
Q 010287 225 RIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK 303 (513)
Q Consensus 225 ~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 303 (513)
..+.+|...+.++.|+++ .+++++ .++.+.+|.+........ .+..|. .+..++|+|++ +.++++ .+
T Consensus 197 -~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~-------~l~~~~-~~~~~~~SpDG-~~la~~-~~ 264 (1045)
T 1k32_A 197 -KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLR-------KHTSFT-DYYPRHLNTDG-RRILFS-KG 264 (1045)
T ss_dssp -EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCE-------ECCCCC-SSCEEEEEESS-SCEEEE-ET
T ss_pred -EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcce-------EecCCC-CcceeeEcCCC-CEEEEE-eC
Confidence 123678889999999988 555566 688899998764332221 223343 35677999999 777776 58
Q ss_pred CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe-ecCCEEEEEeCCeEEEEEccCCCCCeeeeeccc
Q 010287 304 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA-RNGRHILSRDYMTLKLWDINMDSGPVATFQVHE 382 (513)
Q Consensus 304 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s-p~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~ 382 (513)
+.|.+||+..... ..+...... .......|...+.+++|+ |||+.|+++.++.|.+|++.. +. ...+..+.
T Consensus 265 ~~i~~~d~~~~~l-----~~l~~~~~~-~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~-~~-~~~~~~~~ 336 (1045)
T 1k32_A 265 GSIYIFNPDTEKI-----EKIEIGDLE-SPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSG-TY-VLKVPEPL 336 (1045)
T ss_dssp TEEEEECTTTCCE-----EECCCCCCC-BCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTS-SB-EEECSCCS
T ss_pred CEEEEecCCceEe-----eeeccCccc-ccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCC-Cc-eEEccCCC
Confidence 9999999843322 222221100 111123355678999999 999999998889999999874 33 33343333
Q ss_pred ccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEE-EEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCC
Q 010287 383 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR-VFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 461 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~-vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 461 (513)
.. .+..++|+ ||+.|++++.++.+. +|++.++.. ..+..+...+..++|+|++++|++++.+
T Consensus 337 ~~--------------~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~--~~l~~~~~~~~~~~~SpDG~~la~~~~~ 399 (1045)
T 1k32_A 337 RI--------------RYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA--EKFEENLGNVFAMGVDRNGKFAVVANDR 399 (1045)
T ss_dssp CE--------------EEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE--EECCCCCCSEEEEEECTTSSEEEEEETT
T ss_pred cc--------------eEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc--eEecCCccceeeeEECCCCCEEEEECCC
Confidence 20 13478999 999999998888898 999886632 3344777889999999999999999999
Q ss_pred CeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcC-----------CcEEEEe
Q 010287 462 GVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS-----------NSLYMYY 512 (513)
Q Consensus 462 ~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~-----------~~~~i~~ 512 (513)
+.+++. +....+.......|...+.+++|||||++||+++. ..+++|.
T Consensus 400 ~~v~~~---d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 400 FEIMTV---DLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp SEEEEE---ETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred CeEEEE---ECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence 999982 22211111111247788999999999999997663 2688875
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=7.8e-24 Score=200.97 Aligned_cols=262 Identities=12% Similarity=0.127 Sum_probs=191.5
Q ss_pred ccccccccEEEEEEcC--------------CCCEEEeecCC------CcEEEEEeeCCCCCCCccCccccccccccCCCc
Q 010287 30 EEVQEVDIISAIEFDK--------------SGDHLATGDRG------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE 89 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp--------------~g~~latg~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (513)
...+|...+..+++++ .+..++.++.+ ++|++||+.+...
T Consensus 112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-------------------- 171 (415)
T 2hqs_A 112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-------------------- 171 (415)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC--------------------
T ss_pred EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC--------------------
Confidence 3556777777777765 15667666654 7999999864332
Q ss_pred ceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeecCC---eEEEEEccCceeeeeeccccCCCcccCCCC
Q 010287 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDK---TIKLWKVQEKKVKKVFDWNVHPEKAAGNGP 166 (513)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (513)
..+.+|. ..|.+++|+| +++.|++++.|+ .|++||+.+++....
T Consensus 172 ----~~l~~~~------------~~v~~~~~Sp--dg~~la~~s~~~~~~~i~~~d~~tg~~~~l--------------- 218 (415)
T 2hqs_A 172 ----FVVHRSP------------QPLMSPAWSP--DGSKLAYVTFESGRSALVIQTLANGAVRQV--------------- 218 (415)
T ss_dssp ----EEEEEES------------SCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCEEEE---------------
T ss_pred ----EEEeCCC------------CcceeeEEcC--CCCEEEEEEecCCCcEEEEEECCCCcEEEe---------------
Confidence 3345566 7899999955 888999998875 999999988764321
Q ss_pred cccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCE
Q 010287 167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 246 (513)
Q Consensus 167 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 246 (513)
..|...+.+++|+|+|+.
T Consensus 219 --------------------------------------------------------------~~~~~~~~~~~~spdg~~ 236 (415)
T 2hqs_A 219 --------------------------------------------------------------ASFPRHNGAPAFSPDGSK 236 (415)
T ss_dssp --------------------------------------------------------------ECCSSCEEEEEECTTSSE
T ss_pred --------------------------------------------------------------ecCCCcccCEEEcCCCCE
Confidence 244456889999999998
Q ss_pred EE-EE-cC--CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC-CC--cEEEEEcCCcccccc
Q 010287 247 FI-SA-DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIRLIDMRQSALCDT 319 (513)
Q Consensus 247 l~-s~-~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~ 319 (513)
|+ ++ .+ ..|++||+.+++.. .+..|...+.+++|+|++ +.|++++. ++ .|.+||+.++..
T Consensus 237 la~~~~~~g~~~i~~~d~~~~~~~---------~l~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~--- 303 (415)
T 2hqs_A 237 LAFALSKTGSLNLYVMDLASGQIR---------QVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAP--- 303 (415)
T ss_dssp EEEEECTTSSCEEEEEETTTCCEE---------ECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCC---
T ss_pred EEEEEecCCCceEEEEECCCCCEE---------eCcCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCCE---
Confidence 88 44 34 45999999865432 345677889999999999 77777665 45 677778877653
Q ss_pred cceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C---CeEEEEEccCCCCCeeeeecccccccccccccccC
Q 010287 320 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND 395 (513)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (513)
..+ ..+...+.+++|+|+|++|++++ + ..|++||+.+ ++. ..+..+. .
T Consensus 304 --~~l------------~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~-~~~-~~l~~~~-~----------- 355 (415)
T 2hqs_A 304 --QRI------------TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GGV-QVLSSTF-L----------- 355 (415)
T ss_dssp --EEC------------CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT-CCE-EECCCSS-S-----------
T ss_pred --EEE------------ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC-CCE-EEecCCC-C-----------
Confidence 111 11225688999999999998754 3 5899999985 443 3343332 1
Q ss_pred CccceeeEEEeCCCCEEEEEeCCC---cEEEEecCCCCccceeecCCCCceeEEEEcCCCC
Q 010287 396 SIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 453 (513)
Q Consensus 396 ~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 453 (513)
+..++|+|||++|++++.++ .|++||+..+ ....+..|...|..++|+|...
T Consensus 356 ----~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 356 ----DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ----CEEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CEEECCCSSSEEEEEEECCCCC
T ss_pred ----cCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cEEEeeCCCCCCcCCccccccc
Confidence 34899999999999888776 7999998743 4567888999999999999743
No 134
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=1.5e-22 Score=197.92 Aligned_cols=290 Identities=11% Similarity=0.081 Sum_probs=202.6
Q ss_pred EEEEEEcCCCCEEEeecCCCcEEEEEe--eCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287 38 ISAIEFDKSGDHLATGDRGGRVVLFER--TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (513)
Q Consensus 38 V~~v~~sp~g~~latg~~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 115 (513)
+.+++|+|+|++|++++.|++|++||+ .+.+. ...+.. . ..+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~-----------------------~~~i~~-g------------~~p 224 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK-----------------------VAEIKI-G------------IEA 224 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE-----------------------EEEEEC-C------------SEE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE-----------------------EEEEec-C------------CCc
Confidence 899999999999999999999999998 44332 122222 1 457
Q ss_pred eeEEEeecC----CCceEEEee-cCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 116 NKIRWCQSA----NSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 116 ~~i~~~~~~----~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
..++| ++ +++++++++ .+++|.+||..++++........... ++
T Consensus 225 ~~va~--sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~----------------------~~------- 273 (543)
T 1nir_A 225 RSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV----------------------DT------- 273 (543)
T ss_dssp EEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS----------------------SS-------
T ss_pred ceEEe--CCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCccc----------------------Cc-------
Confidence 89999 55 778888887 58999999998887665433211000 00
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeecccc-CCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCccee
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA--DDLRINLWNLEISNQSF 267 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~ 267 (513)
...|. ..+.++.+++++..++.+ .++.|.+||..+.+...
T Consensus 274 -------------------------------------~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~ 316 (543)
T 1nir_A 274 -------------------------------------QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT 316 (543)
T ss_dssp -------------------------------------CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE
T ss_pred -------------------------------------cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce
Confidence 00122 258899999987776665 69999999998655332
Q ss_pred eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287 268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 347 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 347 (513)
+. . ..+...+.++.|+|++..+++++..++.|.+||+.++++ ...+..... .|.+....+
T Consensus 317 -~~-----~-i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l----~~~i~~g~~--------ph~g~g~~~- 376 (543)
T 1nir_A 317 -VT-----S-IGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL----SALVDVGKT--------PHPGRGANF- 376 (543)
T ss_dssp -EE-----E-EECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE----EEEEECSSS--------BCCTTCEEE-
T ss_pred -eE-----E-eccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE----EEeeccCCC--------CCCCCCccc-
Confidence 10 1 124566788999999933445556689999999999876 333332211 122222223
Q ss_pred Eeec-CCEEEEEe--CCeEEEEEccCC------CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe--
Q 010287 348 FARN-GRHILSRD--YMTLKLWDINMD------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-- 416 (513)
Q Consensus 348 ~sp~-~~~l~~~~--~~~v~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-- 416 (513)
++|+ +.+++++. +++|.+||+.+. .+.++++..+... +..++++|++++|++++
T Consensus 377 ~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~---------------~~~v~~~pdg~~l~v~~~~ 441 (543)
T 1nir_A 377 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG---------------SLFIKTHPKSSHLYVDTTF 441 (543)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC---------------CCCEECCTTCCEEEECCTT
T ss_pred CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC---------------ceEEEcCCCCCcEEEecCC
Confidence 4776 66677764 499999999852 4667777776543 23789999999999987
Q ss_pred -----CCCcEEEEecCCCCccceee--------cCCCCceeEEEEcCCCCceeee-----cCCCeEEE
Q 010287 417 -----YSNLFRVFGCSEGSAESTTL--------EASKNPMRRQVQTPSRPSRPLG-----SLSGVVRR 466 (513)
Q Consensus 417 -----~dg~i~vwd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~-----~~d~~i~~ 466 (513)
.+++|.+||+.+++.....+ ..+...+..+.|+|+|+.++++ +.|+.|.+
T Consensus 442 ~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v 509 (543)
T 1nir_A 442 NPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVV 509 (543)
T ss_dssp CSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEE
T ss_pred CCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEE
Confidence 26799999999886543443 3557789999999999998865 34788988
No 135
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=1.1e-22 Score=207.86 Aligned_cols=248 Identities=6% Similarity=-0.000 Sum_probs=160.8
Q ss_pred CCeEEEEeccCCCEEEEEcCCeEEEEEcCC-----CcceeeecccCcc-------ccccccCCeEEEEEeCCCCeEEEEE
Q 010287 233 YHINSISNNSDGETFISADDLRINLWNLEI-----SNQSFNIVDVKPA-------NMEDLTEVITSAEFHPTHCNMLAYS 300 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~-----~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~l~~~ 300 (513)
..+.+++|+|||+.|+++.++.|++|++.+ ++.. .+...... ..+.+...+.++.|+||+ +.|+++
T Consensus 121 ~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~-~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~ 198 (706)
T 2z3z_A 121 EETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAI-AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFY 198 (706)
T ss_dssp TCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCE-ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SEEEEE
T ss_pred ccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcE-EeccCCCCCeEcccchhhhhcCCCceEEECCCC-CEEEEE
Confidence 346678999999999998889999999986 4432 21100000 000111225899999999 888887
Q ss_pred e---------------------------------CCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287 301 S---------------------------------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 347 (513)
Q Consensus 301 ~---------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 347 (513)
+ .+..|.+||+.+++.. ..... ..|...+.+++
T Consensus 199 ~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~----~~~~~----------~~~~~~~~~~~ 264 (706)
T 2z3z_A 199 RMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV----YLQTG----------EPKEKFLTNLS 264 (706)
T ss_dssp EEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE----ECCCC----------SCTTCEEEEEE
T ss_pred EECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE----eeccC----------CCCceeEeeEE
Confidence 7 3467999999876531 11110 12335789999
Q ss_pred EeecCCEEEEEe-CC-----eEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC--CCCEEEEEeCCC
Q 010287 348 FARNGRHILSRD-YM-----TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG--DGGRVATGSYSN 419 (513)
Q Consensus 348 ~sp~~~~l~~~~-~~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg 419 (513)
|+|||+.|+++. ++ .|++||+.+ ++....+....... .+..+..+.|+| ||+++++++.|+
T Consensus 265 ~spdg~~l~~~~~~~~~~~~~v~~~d~~~-g~~~~~~~~~~~~~----------~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 265 WSPDENILYVAEVNRAQNECKVNAYDAET-GRFVRTLFVETDKH----------YVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEEETTT-CCEEEEEEEEECSS----------CCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred EECCCCEEEEEEeCCCCCeeEEEEEECCC-CceeeEEEEccCCC----------eECccCCceeecCCCCEEEEEEccCC
Confidence 999999888754 33 899999986 53333332211100 000013689999 999999999999
Q ss_pred cEEEEecCCCCccceeecCCCCceeE-EEEcCCCCceeeecC-CC----eEEEecCCCCCccccCCccccccCCeeEEEE
Q 010287 420 LFRVFGCSEGSAESTTLEASKNPMRR-QVQTPSRPSRPLGSL-SG----VVRRVKGADNSALDANGNAFDFSMKLLHLAW 493 (513)
Q Consensus 420 ~i~vwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~-d~----~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 493 (513)
.++||.+.........+..+...+.. +.|+|+++.|+.++. ++ .|........ ....+.+...+.+++|
T Consensus 334 ~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~-----~~~~l~~~~~~~~~~~ 408 (706)
T 2z3z_A 334 WNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG-----KTKDLTPESGMHRTQL 408 (706)
T ss_dssp SCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC-----CCEESCCSSSEEEEEE
T ss_pred ccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC-----CceeccCCCceEEEEE
Confidence 99999876333444666677777776 799999998765544 43 3443221110 1122335677999999
Q ss_pred eCCCCEEEEEc-C----CcEEEEe
Q 010287 494 HPSENSIACAA-S----NSLYMYY 512 (513)
Q Consensus 494 sp~~~~la~~~-~----~~~~i~~ 512 (513)
|||+++|+.+. + ..+++|+
T Consensus 409 spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 409 SPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp CTTSSEEEEEEECSSCSCEEEEEE
T ss_pred CCCCCEEEEEecCCCCCcEEEEEE
Confidence 99999988653 2 2377875
No 136
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=3.2e-21 Score=179.62 Aligned_cols=283 Identities=8% Similarity=0.035 Sum_probs=196.1
Q ss_pred cccccEEEEEEcCCCCEEEeecC-------CCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccc
Q 010287 33 QEVDIISAIEFDKSGDHLATGDR-------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (513)
Q Consensus 33 ~h~~~V~~v~~sp~g~~latg~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (513)
.....+..++|+|+|++|++++. ++.|.+||..+++.. ..+.. .
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~-----------------------~~~~~-~----- 88 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT-----------------------QAIHN-D----- 88 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE-----------------------EEEEE-S-----
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE-----------------------EEEec-C-----
Confidence 34567899999999998888774 567999998765531 11111 1
Q ss_pred cccccccccceeEEEeecCCCceEEEe-ecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCC
Q 010287 106 LKSLEIEEKINKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (513)
Q Consensus 106 ~~~~~~~~~i~~i~~~~~~~~~~l~s~-s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 184 (513)
..+..++|+| ++++++++ ..++.|.+||..+++............ +
T Consensus 89 -------~~~~~~~~s~--dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~---------------------~--- 135 (353)
T 3vgz_A 89 -------LKPFGATINN--TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR---------------------T--- 135 (353)
T ss_dssp -------SCCCSEEEET--TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCC---------------------C---
T ss_pred -------CCcceEEECC--CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc---------------------c---
Confidence 4478889965 66655554 568999999999887655433211000 0
Q ss_pred ccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE---cCCeEEEEEcC
Q 010287 185 CGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLE 261 (513)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---~d~~i~vwd~~ 261 (513)
.......+.+++|+|+++.++++ .++.|.+||..
T Consensus 136 -------------------------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 136 -------------------------------------------EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp -------------------------------------------SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT
T ss_pred -------------------------------------------cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC
Confidence 00011226789999999987765 27899999998
Q ss_pred CCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccc
Q 010287 262 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 341 (513)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (513)
+++.... +..+...+.+++|+|++ +.+++++.++.|.+||+.+++.. ..+.... .++..
T Consensus 173 ~~~~~~~--------~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~----~~~~~~~--------~~~~~ 231 (353)
T 3vgz_A 173 NIKLKTA--------IQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKIL----SRKKLLD--------DGKEH 231 (353)
T ss_dssp TTEEEEE--------ECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEE----EEEECCC--------SSSCC
T ss_pred CCceEEE--------ecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEE----EEEEcCC--------CCCCc
Confidence 7654332 23244557889999999 78888889999999999887652 2222211 11234
Q ss_pred cEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe-CC
Q 010287 342 SISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YS 418 (513)
Q Consensus 342 ~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d 418 (513)
.+..++|+|+++++++++ + +.|.+||+.+ ++.+..+...... .++|+|+++++++++ .+
T Consensus 232 ~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~~-----------------~~~~s~dg~~l~v~~~~~ 293 (353)
T 3vgz_A 232 FFINISLDTARQRAFITDSKAAEVLVVDTRN-GNILAKVAAPESL-----------------AVLFNPARNEAYVTHRQA 293 (353)
T ss_dssp CEEEEEEETTTTEEEEEESSSSEEEEEETTT-CCEEEEEECSSCC-----------------CEEEETTTTEEEEEETTT
T ss_pred ccceEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCCc-----------------eEEECCCCCEEEEEECCC
Confidence 688899999999877754 4 8999999986 7777666543321 789999999766555 78
Q ss_pred CcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCC
Q 010287 419 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 461 (513)
Q Consensus 419 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 461 (513)
+.|.+||+.++ +....+... ..+..++|+|++++|+.+..+
T Consensus 294 ~~v~~~d~~~~-~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 294 GKVSVIDAKSY-KVVKTFDTP-THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TEEEEEETTTT-EEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred CeEEEEECCCC-eEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence 99999999887 333444443 356789999999977665433
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=6.4e-22 Score=179.40 Aligned_cols=233 Identities=12% Similarity=0.090 Sum_probs=162.2
Q ss_pred cccCCeEEEEeccCCCEEEEEcCCeEEEEEcCC-CcceeeecccCccccccc-cCCeEEEEEeCCCCeEEEEEe--CCCc
Q 010287 230 AHDYHINSISNNSDGETFISADDLRINLWNLEI-SNQSFNIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSS--SKGS 305 (513)
Q Consensus 230 ~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~--~dg~ 305 (513)
.|...|.+++|+|++++|+++.++.|++||+.+ ++.. . ....+ ...+.+++|+|++ +.|++++ .++.
T Consensus 39 ~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~-~-------~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~ 109 (297)
T 2ojh_A 39 QTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPE-K-------VDTGFATICNNDHGISPDG-ALYAISDKVEFGK 109 (297)
T ss_dssp EESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCE-E-------CCCTTCCCBCSCCEECTTS-SEEEEEECTTTSS
T ss_pred cCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCce-E-------eccccccccccceEECCCC-CEEEEEEeCCCCc
Confidence 456679999999999999999889999999987 5432 2 12233 4678899999999 8888888 3455
Q ss_pred EEEEEc--CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEE-EEe-CCeEEEEEccCCCCCeeeeecc
Q 010287 306 IRLIDM--RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL-SRD-YMTLKLWDINMDSGPVATFQVH 381 (513)
Q Consensus 306 i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~-~~~-~~~v~iwd~~~~~~~~~~~~~~ 381 (513)
..+|.+ .++. ...+... ..+..++|+|++++|+ ++. ++.+++|++.........+..+
T Consensus 110 ~~l~~~~~~~~~-----~~~~~~~-------------~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 171 (297)
T 2ojh_A 110 SAIYLLPSTGGT-----PRLMTKN-------------LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG 171 (297)
T ss_dssp CEEEEEETTCCC-----CEECCSS-------------SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS
T ss_pred ceEEEEECCCCc-----eEEeecC-------------CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC
Confidence 666655 3332 1112111 2488899999999887 444 5889999976534444444443
Q ss_pred cccccccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecC
Q 010287 382 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 460 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 460 (513)
... +..++|+|++++|+.++ .++.+++|++.........+..+...+..+.|+|++++|++++.
T Consensus 172 ~~~---------------~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 236 (297)
T 2ojh_A 172 EGR---------------NDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSY 236 (297)
T ss_dssp SSC---------------EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred CCc---------------cccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEc
Confidence 332 34899999999888666 58999999987433445667777788899999999999998877
Q ss_pred C-----------CeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcC
Q 010287 461 S-----------GVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS 505 (513)
Q Consensus 461 d-----------~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~ 505 (513)
+ +.+.+.+..... .........|...|..++|+|+++.|++++.
T Consensus 237 ~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 237 DADVFDHPRDLDVRVQLMDMDGGN-VETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp ETTCCSCCSSEEEEEEEEETTSCS-CEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred CCCCCcccccCceEEEEEecCCCC-ceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence 6 345552211110 0011112256778999999999999997764
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=3.7e-21 Score=178.43 Aligned_cols=237 Identities=14% Similarity=0.146 Sum_probs=143.0
Q ss_pred CeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-CCCcEEEEE
Q 010287 234 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLID 310 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~vwd 310 (513)
.+.+++|+|++++++++ .++.|.+||+..+. ..... ..+. ....+.+++|+|++ +.+++++ .++.|.+||
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-~~~~~----~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d 157 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL-PVGVV----DVVE-GLDGCHSANISPDN-RTLWVPALKQDRICLFT 157 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTE-EEEEE----EEEC-CCTTBCCCEECTTS-SEEEEEEGGGTEEEEEE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc-ccccc----cccc-CCCCceEEEECCCC-CEEEEecCCCCEEEEEE
Confidence 47789999999988765 48999999995221 11111 0122 23458899999999 6666665 899999999
Q ss_pred cCC-cccccccce--eeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeecccccc
Q 010287 311 MRQ-SALCDTHSK--LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLR 385 (513)
Q Consensus 311 ~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~ 385 (513)
+.+ +.... .. .+... ....+..++|+|+++++++++ . +.|.+|++......+..........
T Consensus 158 ~~~~~~~~~--~~~~~~~~~-----------~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~ 224 (343)
T 1ri6_A 158 VSDDGHLVA--QDPAEVTTV-----------EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP 224 (343)
T ss_dssp ECTTSCEEE--EEEEEEECS-----------TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSC
T ss_pred ecCCCceee--ecccccccC-----------CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccC
Confidence 986 44211 11 11111 113678899999999777654 3 9999999963122211111100000
Q ss_pred cccccccccCCccceeeEEEeCCCCEEEE-EeCCCcEEEEecCC--CC-ccceeecCCCCceeEEEEcCCCCceeeec-C
Q 010287 386 PKLCDLYENDSIFDKFECCLSGDGGRVAT-GSYSNLFRVFGCSE--GS-AESTTLEASKNPMRRQVQTPSRPSRPLGS-L 460 (513)
Q Consensus 386 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~vwd~~~--~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~ 460 (513)
.. + .....+..++|+|++++|++ +..++.|.+|++.. +. .....+..+.. +..++|+|++++|++++ .
T Consensus 225 ~~----~--~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~ 297 (343)
T 1ri6_A 225 EN----F--SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQK 297 (343)
T ss_dssp TT----C--CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTT
T ss_pred cc----c--cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCC
Confidence 00 0 00111336999999998874 45789999999983 22 22233444444 78999999999888776 6
Q ss_pred CCeEEEe--cCCCCCccccCCccccccCCeeEEEEeCCCCE
Q 010287 461 SGVVRRV--KGADNSALDANGNAFDFSMKLLHLAWHPSENS 499 (513)
Q Consensus 461 d~~i~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~ 499 (513)
++.+.+. +...-. ......+.......+++|.|+.+.
T Consensus 298 ~~~v~v~~~d~~~g~--~~~~~~~~~g~~p~~i~~~~~~~~ 336 (343)
T 1ri6_A 298 SHHISVYEIVGEQGL--LHEKGRYAVGQGPMWVVVNAHEGG 336 (343)
T ss_dssp TCEEEEEEEETTTTE--EEEEEEEECSSSCCEEEEEEEC--
T ss_pred CCeEEEEEEcCCCce--eeEccccccCCCCeeEEEEcccCC
Confidence 7899882 211000 001111222456778888887654
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=8.8e-22 Score=178.47 Aligned_cols=258 Identities=13% Similarity=0.115 Sum_probs=177.0
Q ss_pred eecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeecCCCceEEE
Q 010287 52 TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLL 131 (513)
Q Consensus 52 tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s 131 (513)
.++.++.|++||+.+++. ..+..|. ..|.+++|+| ++.+|++
T Consensus 17 ~~~~~~~i~~~d~~~~~~------------------------~~~~~~~------------~~v~~~~~sp--dg~~l~~ 58 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKM------------------------RVVWQTP------------ELFEAPNWSP--DGKYLLL 58 (297)
T ss_dssp -CCCCEEEEEEETTTTEE------------------------EEEEEES------------SCCEEEEECT--TSSEEEE
T ss_pred CCCcceeEEEEeCCCCce------------------------eeeccCC------------cceEeeEECC--CCCEEEE
Confidence 346788999999876553 1233455 7799999955 7778888
Q ss_pred eecCCeEEEEEccC-ceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceece
Q 010287 132 STNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLP 210 (513)
Q Consensus 132 ~s~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ 210 (513)
++ ++.|++||+.+ ++......
T Consensus 59 ~~-~~~i~~~d~~~~~~~~~~~~--------------------------------------------------------- 80 (297)
T 2ojh_A 59 NS-EGLLYRLSLAGDPSPEKVDT--------------------------------------------------------- 80 (297)
T ss_dssp EE-TTEEEEEESSSCCSCEECCC---------------------------------------------------------
T ss_pred Ec-CCeEEEEeCCCCCCceEecc---------------------------------------------------------
Confidence 76 88999999988 65432210
Q ss_pred eeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEc---CCeEEEEEcCCCcceeeecccCccccccccCCeEEE
Q 010287 211 VVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA 287 (513)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 287 (513)
..+...+.+++|+|++++|+++. ++...+|.+........ .+.. ...+..+
T Consensus 81 ------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~-~~~~~~~ 134 (297)
T 2ojh_A 81 ------------------GFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR-------LMTK-NLPSYWH 134 (297)
T ss_dssp ------------------TTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE-------ECCS-SSSEEEE
T ss_pred ------------------ccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceE-------Eeec-CCCccce
Confidence 01124477899999999999873 34555555432222221 2222 2348899
Q ss_pred EEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--CCeEEE
Q 010287 288 EFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKL 365 (513)
Q Consensus 288 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~~~v~i 365 (513)
+|+|++..++++++.++.+++|++...... ... +..+...+.+++|+|++++|+.+. ++.+++
T Consensus 135 ~~spdg~~l~~~~~~~~~~~l~~~~~~~~~---~~~------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i 199 (297)
T 2ojh_A 135 GWSPDGKSFTYCGIRDQVFDIYSMDIDSGV---ETR------------LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQI 199 (297)
T ss_dssp EECTTSSEEEEEEEETTEEEEEEEETTTCC---EEE------------CCCSSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred EECCCCCEEEEEECCCCceEEEEEECCCCc---ceE------------cccCCCccccceECCCCCEEEEEecCCCCccE
Confidence 999999444448888999999986432110 111 222346789999999999888654 488999
Q ss_pred EEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC-----------CcEEEEecCCCCcc-c
Q 010287 366 WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-----------NLFRVFGCSEGSAE-S 433 (513)
Q Consensus 366 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~vwd~~~~~~~-~ 433 (513)
|++...+..+..+..+... +..++|+|++++|++++.+ +.|++||+.++... +
T Consensus 200 ~~~~~~~~~~~~~~~~~~~---------------~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 264 (297)
T 2ojh_A 200 WRVRVDGSSVERITDSAYG---------------DWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETL 264 (297)
T ss_dssp EEEETTSSCEEECCCCSEE---------------EEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEE
T ss_pred EEECCCCCCcEEEecCCcc---------------cCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceee
Confidence 9987435556555544432 4479999999999988765 56999999877433 2
Q ss_pred eeecCCCCceeEEEEcCCCCceeeecCC
Q 010287 434 TTLEASKNPMRRQVQTPSRPSRPLGSLS 461 (513)
Q Consensus 434 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d 461 (513)
..+..|...+..+.|+|+++.|++++.+
T Consensus 265 ~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 265 FDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp EEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred eccCCCCcccccceECCCCCEEEEEEec
Confidence 3445778889999999999999887654
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=1.3e-20 Score=173.79 Aligned_cols=273 Identities=7% Similarity=0.084 Sum_probs=178.4
Q ss_pred EEEcCCCC-EEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEE
Q 010287 41 IEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (513)
Q Consensus 41 v~~sp~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~ 119 (513)
..|.+++. .+++++.++.|.+||..+++.. ..+..+. ..+ .++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-----------------------~~~~~~~------------~~~-~~~ 46 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEIL-----------------------NQITLGY------------DFV-DTA 46 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEE-----------------------EEEECCC------------CEE-EEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccccee-----------------------eeEEccC------------Ccc-eEE
Confidence 45666655 4778888999999998766531 1222222 445 899
Q ss_pred EeecCCCceEEEeec-CCeEEEEEccCcee-eeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCC
Q 010287 120 WCQSANSALYLLSTN-DKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (513)
Q Consensus 120 ~~~~~~~~~l~s~s~-d~~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 197 (513)
|+| +++++++++. ++.|.+||+.+++. ...
T Consensus 47 ~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~~---------------------------------------------- 78 (331)
T 3u4y_A 47 ITS--DCSNVVVTSDFCQTLVQIETQLEPPKVVA---------------------------------------------- 78 (331)
T ss_dssp ECS--SSCEEEEEESTTCEEEEEECSSSSCEEEE----------------------------------------------
T ss_pred EcC--CCCEEEEEeCCCCeEEEEECCCCceeEEe----------------------------------------------
Confidence 955 7776766655 89999999988764 211
Q ss_pred CcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEc-C-C--eEEEEEcCCCcceeeecccC
Q 010287 198 SFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD-D-L--RINLWNLEISNQSFNIVDVK 273 (513)
Q Consensus 198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-d-~--~i~vwd~~~~~~~~~~~~~~ 273 (513)
...+.....+++|+|++++++++. + + .|.+||+.+++....
T Consensus 79 ------------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~----- 123 (331)
T 3u4y_A 79 ------------------------------IQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST----- 123 (331)
T ss_dssp ------------------------------EEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE-----
T ss_pred ------------------------------cccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE-----
Confidence 112223344489999999999663 3 3 999999987654322
Q ss_pred ccccccccCCeEEEEEeCCCCeEEEEEeCCCc-EEEEEcCCccccccc-ceeeccccCCCCccccccccccEEEEEEeec
Q 010287 274 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTH-SKLFEEQEAPGTRSFFTEIIASISDIKFARN 351 (513)
Q Consensus 274 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 351 (513)
+. ....+.+++|+|++..++++...++. |.+|++......... ...+ ........++|+|+
T Consensus 124 ---~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-------------~~~~~~~~~~~spd 186 (331)
T 3u4y_A 124 ---IP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-------------SGGTRPFNITFTPD 186 (331)
T ss_dssp ---EE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-------------CSSSSEEEEEECTT
T ss_pred ---EE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc-------------cCCCCccceEECCC
Confidence 12 23456899999999446666667788 999998753321100 0111 11245789999999
Q ss_pred CCEEEEEe-C-CeEEEEEccCCCCC---eeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEe
Q 010287 352 GRHILSRD-Y-MTLKLWDINMDSGP---VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFG 425 (513)
Q Consensus 352 ~~~l~~~~-~-~~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd 425 (513)
|++++++. . +.|.+||+.. ++. +..+..... +..++|+|||++|++++ .++.|.+||
T Consensus 187 g~~l~v~~~~~~~v~v~d~~~-~~~~~~~~~~~~~~~----------------~~~~~~spdg~~l~v~~~~~~~i~~~d 249 (331)
T 3u4y_A 187 GNFAFVANLIGNSIGILETQN-PENITLLNAVGTNNL----------------PGTIVVSRDGSTVYVLTESTVDVFNFN 249 (331)
T ss_dssp SSEEEEEETTTTEEEEEECSS-TTSCEEEEEEECSSC----------------CCCEEECTTSSEEEEECSSEEEEEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCC-CcccceeeeccCCCC----------------CceEEECCCCCEEEEEEcCCCEEEEEE
Confidence 99776644 3 9999999986 666 555543322 23799999999776554 578899999
Q ss_pred cCCCCcc-ceeecCC----CCc---eeEEEEcCCCCceeee-cCCCeEEE
Q 010287 426 CSEGSAE-STTLEAS----KNP---MRRQVQTPSRPSRPLG-SLSGVVRR 466 (513)
Q Consensus 426 ~~~~~~~-~~~~~~~----~~~---v~~~~~~~~~~~l~~~-~~d~~i~~ 466 (513)
+.+++.. ...+..+ ..+ ...++|+|++++|+++ ..++.|.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v 299 (331)
T 3u4y_A 250 QLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKV 299 (331)
T ss_dssp TTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEE
Confidence 9887431 1222211 222 2458999999988654 55678888
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.89 E-value=4e-21 Score=197.36 Aligned_cols=310 Identities=8% Similarity=-0.010 Sum_probs=193.1
Q ss_pred ccceeEEEeecCCCceEEEeec-CC-----eEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287 113 EKINKIRWCQSANSALYLLSTN-DK-----TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~-d~-----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 186 (513)
..+.+++|+ +||++|++++. |+ .|++||+.+++........... |+|+.+
T Consensus 37 ~~~~~~~~S--pdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~----------------------~~~~~~ 92 (741)
T 2ecf_A 37 PTLMKPKVA--PDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL----------------------PGTETL 92 (741)
T ss_dssp CCCEEEEEC--TTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC----------------------------
T ss_pred CCCCCceEe--cCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc----------------------cccccc
Confidence 569999995 48889999988 88 9999999998766554432110 122211
Q ss_pred ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCc--
Q 010287 187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISN-- 264 (513)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~-- 264 (513)
+. ..... ..+.. ......+.+++|+|||++|+++.++.|++||+.++.
T Consensus 93 -------------~~-----------~~~~~----~~~~~--~~~~~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~ 142 (741)
T 2ecf_A 93 -------------SD-----------EEKAR----RERQR--IAAMTGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKA 142 (741)
T ss_dssp --------------------------------------------CCEESCCCEECTTSSEEEEEETTEEEEEESSSCSTT
T ss_pred -------------cc-----------hhhhh----hhhhh--hccccCcceeEECCCCCEEEEEeCCcEEEEECCCCCcc
Confidence 00 00000 00000 011133778999999999999867999999998662
Q ss_pred ceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCC----Ccccccccc
Q 010287 265 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG----TRSFFTEII 340 (513)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 340 (513)
... .+..|...+..++|+||| +.|++++ ++.|.+||+.++... .......... .........
T Consensus 143 ~~~--------~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~~~----~~~~~~~~~~~~g~~~~v~~~~~ 208 (741)
T 2ecf_A 143 AVR--------QLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGRQM----QLTADGSTTIGNGIAEFVADEEM 208 (741)
T ss_dssp SCC--------BCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTEEE----ECCCCCCSSEEESCCCHHHHHHS
T ss_pred eEE--------EcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCCEE----EeccCCccceeccccceeeeecc
Confidence 221 345677889999999999 8888776 569999999876542 1111110000 000000011
Q ss_pred ccEEEEEEeecCCEEEEEe-CC---------------------------------eEEEEEccCCCCCeeeeec--cccc
Q 010287 341 ASISDIKFARNGRHILSRD-YM---------------------------------TLKLWDINMDSGPVATFQV--HEHL 384 (513)
Q Consensus 341 ~~v~~i~~sp~~~~l~~~~-~~---------------------------------~v~iwd~~~~~~~~~~~~~--~~~~ 384 (513)
..+.++.|||||++|++++ ++ .|++||+...++....... +...
T Consensus 209 ~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 288 (741)
T 2ecf_A 209 DRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIY 288 (741)
T ss_dssp CCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEE
T ss_pred ccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceE
Confidence 2257899999999998864 33 7788887630232222111 2111
Q ss_pred ccccccccccCCccceeeEEEeCCCCEEEEEeC-----CCcEEEEecCCCCccceeecCCCC----ceeEEEEcCCCCce
Q 010287 385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-----SNLFRVFGCSEGSAESTTLEASKN----PMRRQVQTPSRPSR 455 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l 455 (513)
+..++| |||++|++++. +..|++||+.++... ..+..+.. .+..+.|+|+++++
T Consensus 289 ---------------~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~~~~spdg~~~ 351 (741)
T 2ecf_A 289 ---------------LARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR-VLAHETSPTWVPLHNSLRFLDDGSIL 351 (741)
T ss_dssp ---------------EEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE-EEEEEECSSCCCCCSCCEECTTSCEE
T ss_pred ---------------EEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE-EEEEcCCCCcCCcCCceEECCCCeEE
Confidence 458999 99999987653 568999999987433 34443332 45688999999999
Q ss_pred eeecCCCeEEE--ecCCCCCccccCCccccccCCeeEE-EEeCCCCEEE-EEcCC---cEEEEe
Q 010287 456 PLGSLSGVVRR--VKGADNSALDANGNAFDFSMKLLHL-AWHPSENSIA-CAASN---SLYMYY 512 (513)
Q Consensus 456 ~~~~~d~~i~~--~~~~~~~~~~~~~~~~~~~~~i~~~-~~sp~~~~la-~~~~~---~~~i~~ 512 (513)
++++.|+.++| .... + . ......+...|..+ +|+||++.|+ +++.+ .+.||.
T Consensus 352 ~~~~~~g~~~l~~~~~~---~-~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 352 WSSERTGFQHLYRIDSK---G-K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp EEECTTSSCEEEEECSS---S-C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred EEecCCCccEEEEEcCC---C-C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 99999997777 2211 0 0 11223456678887 5999999876 44444 567774
No 142
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=2.4e-21 Score=198.28 Aligned_cols=328 Identities=11% Similarity=0.032 Sum_probs=198.8
Q ss_pred EEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEE
Q 010287 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (513)
Q Consensus 40 ~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~ 119 (513)
+++|+|+|++++++ .|+.|++||+.+++.. ..+.+|.. . ...+.+++
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~-----------------------~~~~~~~~-----~----~~~~~~~~ 66 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY-----------------------TILSNRTM-----K----SVNASNYG 66 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEE-----------------------EEECHHHH-----H----TTTCSEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE-----------------------EEEccccc-----c----ccceeeEE
Confidence 78999999766665 5899999998876631 11222220 0 01388999
Q ss_pred EeecCCCceEEEeec---------CCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 120 WCQSANSALYLLSTN---------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 120 ~~~~~~~~~l~s~s~---------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
|+| ||++|++++. |+.|++||+.+++......+
T Consensus 67 ~Sp--Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l------------------------------------ 108 (719)
T 1z68_A 67 LSP--DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL------------------------------------ 108 (719)
T ss_dssp ECT--TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC------------------------------------
T ss_pred ECC--CCCeEEEEecCceeEEeecceEEEEEECCCCccccceec------------------------------------
Confidence 955 8889998876 78999999998864210000
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeec
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIV 270 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~ 270 (513)
...+..++|+|||+.|+.+.++.|++|++.+++.. .+.
T Consensus 109 -----------------------------------------~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~-~l~ 146 (719)
T 1z68_A 109 -----------------------------------------PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPF-QIT 146 (719)
T ss_dssp -----------------------------------------CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCE-ECC
T ss_pred -----------------------------------------CcccccceECCCCCEEEEEECCeEEEEeCCCCCcE-EEe
Confidence 02367799999999999998899999999866532 211
Q ss_pred -ccCc-cccccccC---------CeEEEEEeCCCCeEEEEEeCCC----------------------------------c
Q 010287 271 -DVKP-ANMEDLTE---------VITSAEFHPTHCNMLAYSSSKG----------------------------------S 305 (513)
Q Consensus 271 -~~~~-~~~~~~~~---------~i~~~~~~~~~~~~l~~~~~dg----------------------------------~ 305 (513)
+... ..+.++.. ...+++|+||| +.|++++.|. .
T Consensus 147 ~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~ 225 (719)
T 1z68_A 147 FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVR 225 (719)
T ss_dssp CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEE
T ss_pred cCCCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeE
Confidence 0000 00111111 12489999999 8888877652 6
Q ss_pred EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-----CeEEEEE----ccCCCCCee
Q 010287 306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-----MTLKLWD----INMDSGPVA 376 (513)
Q Consensus 306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-----~~v~iwd----~~~~~~~~~ 376 (513)
|++||+.++..... ..+..+ ..+.+|...+.+++|+||++++++..+ ..|.+|| +.+ ++...
T Consensus 226 l~~~d~~~~~~~~~--~~~~~~------~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~ 296 (719)
T 1z68_A 226 IFIIDTTYPAYVGP--QEVPVP------AMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-WDCPK 296 (719)
T ss_dssp EEEEESSCHHHHCC--EECCCC------HHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-EECCG
T ss_pred EEEEECCCCCccce--eEccCC------ccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-CceEE
Confidence 78888877653100 000000 013345678999999999887776432 3588888 654 44333
Q ss_pred ee----ecccccccccccccccCCccceeeEEEeCCCCEEEE--EeCCC--cEEEEecCCCCccceeecCCCCceeEEEE
Q 010287 377 TF----QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT--GSYSN--LFRVFGCSEGSAESTTLEASKNPMRRQVQ 448 (513)
Q Consensus 377 ~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~ 448 (513)
.+ ..+...... .....+.|+|||+.|+. ...+| .|++|++.++. ...+..+...+..+.+
T Consensus 297 ~~~~~~~~~~~~~~~----------~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~~ 364 (719)
T 1z68_A 297 TQEHIEESRTGWAGG----------FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--AIQITSGKWEAINIFR 364 (719)
T ss_dssp GGEEEEECSSSCSSS----------SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT--CEECSCSSSCEEEEEE
T ss_pred EEecccccCCceEcc----------ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc--eEecccCceEEEEEEE
Confidence 33 233322100 00015789999996554 44555 56777776553 3455555566777777
Q ss_pred cCCCCceeeecCC-----CeEEE--ec--CCCCCccccCCccccccCCeeEEEEeCCCCEEEEE
Q 010287 449 TPSRPSRPLGSLS-----GVVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 503 (513)
Q Consensus 449 ~~~~~~l~~~~~d-----~~i~~--~~--~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~ 503 (513)
. +++.++..+.+ +..++ .. +.......+.....++...+..++|+||+++|+..
T Consensus 365 ~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~ 427 (719)
T 1z68_A 365 V-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALV 427 (719)
T ss_dssp E-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEE
T ss_pred E-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEE
Confidence 7 77777665544 66666 21 11110001111111245678899999999988843
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=4.4e-20 Score=171.14 Aligned_cols=302 Identities=12% Similarity=0.112 Sum_probs=181.2
Q ss_pred cccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCC-CcEEEEEee--CCCCCCCccCccccccccccCCC
Q 010287 12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRG-GRVVLFERT--DTRDNGGQRRDLEMMDYSMSRHP 88 (513)
Q Consensus 12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~d-g~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~ 88 (513)
.....|++.. -+.........|...+.+++|+|+|++|++++.+ +.|.+|++. ++..
T Consensus 15 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~------------------- 74 (343)
T 1ri6_A 15 QQIHVWNLNH-EGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL------------------- 74 (343)
T ss_dssp TEEEEEEECT-TSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-------------------
T ss_pred CeEEEEEECC-CCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-------------------
Confidence 3445576642 1222223345677889999999999998888876 899999986 3221
Q ss_pred cceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeec-CCeEEEEEccCceeeeeeccccCCCcccCCCCc
Q 010287 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI 167 (513)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (513)
.....+..+ ..+..++|+| +++++++++. ++.|.+||+..+.......
T Consensus 75 --~~~~~~~~~-------------~~~~~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~-------------- 123 (343)
T 1ri6_A 75 --TFAAESALP-------------GSLTHISTDH--QGQFVFVGSYNAGNVSVTRLEDGLPVGVVD-------------- 123 (343)
T ss_dssp --EEEEEEECS-------------SCCSEEEECT--TSSEEEEEETTTTEEEEEEEETTEEEEEEE--------------
T ss_pred --eeccccccC-------------CCCcEEEEcC--CCCEEEEEecCCCeEEEEECCCCccccccc--------------
Confidence 011112111 4588999954 7777777654 8999999995332111100
Q ss_pred ccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEE
Q 010287 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF 247 (513)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 247 (513)
.......+.+++|+|+++++
T Consensus 124 ------------------------------------------------------------~~~~~~~~~~~~~s~dg~~l 143 (343)
T 1ri6_A 124 ------------------------------------------------------------VVEGLDGCHSANISPDNRTL 143 (343)
T ss_dssp ------------------------------------------------------------EECCCTTBCCCEECTTSSEE
T ss_pred ------------------------------------------------------------cccCCCCceEEEECCCCCEE
Confidence 00111237788999999987
Q ss_pred EEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC--ccccccccee
Q 010287 248 ISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ--SALCDTHSKL 323 (513)
Q Consensus 248 ~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~ 323 (513)
+++ .++.|.+||+.+.......... . ........+..++|+|++..+++++..++.|.+||+.. +... ....
T Consensus 144 ~~~~~~~~~v~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~--~~~~ 219 (343)
T 1ri6_A 144 WVPALKQDRICLFTVSDDGHLVAQDPA-E-VTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE--CVQT 219 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEE-E-EECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE--EEEE
T ss_pred EEecCCCCEEEEEEecCCCceeeeccc-c-cccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE--EEee
Confidence 776 5999999999863322211000 0 01112356889999999933445555899999999954 3221 0111
Q ss_pred eccccCCCCccccccccccEEEEEEeecCCEEEEEe--CCeEEEEEccCCCC---CeeeeecccccccccccccccCCcc
Q 010287 324 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSG---PVATFQVHEHLRPKLCDLYENDSIF 398 (513)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~~~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (513)
....... ......+..++|+|++++|+++. ++.|.+||+..... .+..+..+..
T Consensus 220 ~~~~~~~------~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~--------------- 278 (343)
T 1ri6_A 220 LDMMPEN------FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ--------------- 278 (343)
T ss_dssp EECSCTT------CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS---------------
T ss_pred ccccCcc------ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc---------------
Confidence 1100000 01123577899999999887544 39999999983222 2222222221
Q ss_pred ceeeEEEeCCCCEEEEEe-CCCcEEEEecC--CCCcc-ceeecCCCCceeEEEEcCC
Q 010287 399 DKFECCLSGDGGRVATGS-YSNLFRVFGCS--EGSAE-STTLEASKNPMRRQVQTPS 451 (513)
Q Consensus 399 ~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~--~~~~~-~~~~~~~~~~v~~~~~~~~ 451 (513)
+..++|+|++++|++++ .++.|.+|++. ++... ...+... .....+++.++
T Consensus 279 -~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~ 333 (343)
T 1ri6_A 279 -PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAH 333 (343)
T ss_dssp -CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEE
T ss_pred -cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcc
Confidence 23799999999888877 68999999554 44221 2233332 23335566554
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=1.1e-20 Score=192.90 Aligned_cols=292 Identities=11% Similarity=0.060 Sum_probs=188.6
Q ss_pred ccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (513)
Q Consensus 36 ~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 115 (513)
..|++++|||| .+++.+. ++.|++||+.+++. ..+..+. ..+
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~------------------------~~l~~~~------------~~~ 123 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKV------------------------TYLFDTN------------EET 123 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEE------------------------EEEECCT------------TCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCce------------------------EEccCCc------------ccc
Confidence 56999999999 6666553 58999999876543 1223333 568
Q ss_pred eeEEEeecCCCceEEEeecCCeEEEEEccC-----ceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQE-----KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
.+++|+| +++.|++ +.|+.|++|++.+ ++...........
T Consensus 124 ~~~~~Sp--dG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~-------------------------------- 168 (706)
T 2z3z_A 124 ASLDFSP--VGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTET-------------------------------- 168 (706)
T ss_dssp TTCEECT--TSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTT--------------------------------
T ss_pred cCCcCCC--CCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCC--------------------------------
Confidence 8999955 8888888 4789999999988 6544322111000
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEc-------------------
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD------------------- 251 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~------------------- 251 (513)
+ .+-.. ....+...+.+++|+|||++|+++.
T Consensus 169 ----------------~-~~g~~-------------~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~ 218 (706)
T 2z3z_A 169 ----------------L-VYGQA-------------VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEA 218 (706)
T ss_dssp ----------------E-EESSC-------------CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSC
T ss_pred ----------------e-Ecccc-------------hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCC
Confidence 0 00000 0011223466788888888888762
Q ss_pred ---------------CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC-----cEEEEEc
Q 010287 252 ---------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG-----SIRLIDM 311 (513)
Q Consensus 252 ---------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~i~vwd~ 311 (513)
+..|++||+.+++... +. ....|...+.+++|+|++ +.|++++.++ .|.+||+
T Consensus 219 ~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~-~~-----~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~ 291 (706)
T 2z3z_A 219 ESKPLYYPMAGTPSHHVTVGIYHLATGKTVY-LQ-----TGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDA 291 (706)
T ss_dssp EEEEECCCBTTSCCCEEEEEEEETTTTEEEE-CC-----CCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEET
T ss_pred ceEEeeCCCCCCCCCeeEEEEEECCCCceEe-ec-----cCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEEC
Confidence 3679999998655321 10 112466779999999999 8888877775 8999999
Q ss_pred CCcccccccceeeccccCCCCccccccccccEEEEEEee--cCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccccc
Q 010287 312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR--NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKL 388 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp--~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 388 (513)
.+++.. ..+...... .....+.++.|+| ||+++++++. +.+++|++...+..+..+..+...
T Consensus 292 ~~g~~~----~~~~~~~~~-------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~---- 356 (706)
T 2z3z_A 292 ETGRFV----RTLFVETDK-------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWE---- 356 (706)
T ss_dssp TTCCEE----EEEEEEECS-------SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSC----
T ss_pred CCCcee----eEEEEccCC-------CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeE----
Confidence 887321 111111000 0001246789999 9998888765 888899887435666666554432
Q ss_pred ccccccCCccceee-EEEeCCCCEEEEEe-CCC----cEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCC-
Q 010287 389 CDLYENDSIFDKFE-CCLSGDGGRVATGS-YSN----LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS- 461 (513)
Q Consensus 389 ~~~~~~~~~~~v~~-~~~s~~~~~l~~~~-~dg----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d- 461 (513)
+.. ++|+|+++.|+.++ .++ .|+.||+.++. ...+. +...+..+.|+|++++++....+
T Consensus 357 -----------v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~--~~~l~-~~~~~~~~~~spdg~~l~~~~~~~ 422 (706)
T 2z3z_A 357 -----------VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK--TKDLT-PESGMHRTQLSPDGSAIIDIFQSP 422 (706)
T ss_dssp -----------EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC--CEESC-CSSSEEEEEECTTSSEEEEEEECS
T ss_pred -----------EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC--ceecc-CCCceEEEEECCCCCEEEEEecCC
Confidence 224 79999999887555 444 67777777653 23333 56678899999999988766433
Q ss_pred ---CeEEE
Q 010287 462 ---GVVRR 466 (513)
Q Consensus 462 ---~~i~~ 466 (513)
+.+.+
T Consensus 423 ~~p~~i~l 430 (706)
T 2z3z_A 423 TVPRKVTV 430 (706)
T ss_dssp SCSCEEEE
T ss_pred CCCcEEEE
Confidence 45766
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=2.3e-20 Score=191.22 Aligned_cols=295 Identities=11% Similarity=0.030 Sum_probs=177.0
Q ss_pred cEEEEEEcCCCCEEEeecCC---------CcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccc
Q 010287 37 IISAIEFDKSGDHLATGDRG---------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (513)
Q Consensus 37 ~V~~v~~sp~g~~latg~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (513)
.|.+++|||||++||+++.+ +.|.+||+.+++.. ......+|.
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---------------------~l~~~~~~~------- 113 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ---------------------SLDPPEVSN------- 113 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE---------------------ECCCTTCCS-------
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE---------------------eccCCcccc-------
Confidence 49999999999999998764 78889998776531 111223344
Q ss_pred cccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (513)
Q Consensus 108 ~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 187 (513)
..+..++|+| ||+.|+.++. +.|++|++.+++...+........ ...|.
T Consensus 114 -----~~~~~~~~SP--dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~--~~~g~--------------------- 162 (723)
T 1xfd_A 114 -----AKLQYAGWGP--KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV--IYNGL--------------------- 162 (723)
T ss_dssp -----CCCSBCCBCS--STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT--EEEEE---------------------
T ss_pred -----ccccccEECC--CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc--eECcc---------------------
Confidence 5588999965 8888988876 789999999887554432211000 00000
Q ss_pred cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-c---------------
Q 010287 188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D--------------- 251 (513)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~--------------- 251 (513)
.-|.. ...-...+.+++|+|||+.|+++ .
T Consensus 163 --------------------~~~v~---------------~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~ 207 (723)
T 1xfd_A 163 --------------------SDWLY---------------EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG 207 (723)
T ss_dssp --------------------CCHHH---------------HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS
T ss_pred --------------------cceeE---------------EEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC
Confidence 00000 00000123556666666666554 2
Q ss_pred -------------------CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC----CCcEEE
Q 010287 252 -------------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS----KGSIRL 308 (513)
Q Consensus 252 -------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----dg~i~v 308 (513)
+..|++||+.+++....+.. +..+..+...+..++|+||+ +++++... +..|.+
T Consensus 208 ~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~--~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~ 284 (723)
T 1xfd_A 208 SIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMP--PDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTL 284 (723)
T ss_dssp SSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCC--CCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEE
T ss_pred cCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeC--CccCCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEE
Confidence 23799999986653222110 01122346678999999999 77766643 357999
Q ss_pred EEcCCcccccccceeeccccCCCCccccccccccE----EEEEEeecCCEEEEE--eC-C------eEEEEEccCCCCC-
Q 010287 309 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI----SDIKFARNGRHILSR--DY-M------TLKLWDINMDSGP- 374 (513)
Q Consensus 309 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~i~~sp~~~~l~~~--~~-~------~v~iwd~~~~~~~- 374 (513)
||+.+++. ...+... +...+ ..++|+|||+.|+.. .. + .|.+||+...+..
T Consensus 285 ~d~~~g~~----~~~~~~~-----------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 349 (723)
T 1xfd_A 285 CDATTGVC----TKKHEDE-----------SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND 349 (723)
T ss_dssp EETTTCCE----EEEEEEE-----------CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC
T ss_pred EeCCCCcc----eEEEEec-----------cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc
Confidence 99988764 2222111 11222 368999999977753 33 6 4666663222331
Q ss_pred -eeeeecccccccccccccccCCcccee-eEEEeCCCCEEEEEeCC---CcEEEEecCCCCc-cceeecC---CCCceeE
Q 010287 375 -VATFQVHEHLRPKLCDLYENDSIFDKF-ECCLSGDGGRVATGSYS---NLFRVFGCSEGSA-ESTTLEA---SKNPMRR 445 (513)
Q Consensus 375 -~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~-~~~~~~~---~~~~v~~ 445 (513)
...+...... +. .++|+|||+.|+..+.+ +.+++|++..... ....+.. +...+..
T Consensus 350 ~~~~l~~~~~~---------------~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 414 (723)
T 1xfd_A 350 NIQSITSGDWD---------------VTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFS 414 (723)
T ss_dssp CCCBSCCSSSC---------------EEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCE
T ss_pred ceeEeecCCeE---------------EEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEE
Confidence 3333321111 12 36899999999866554 7899999875432 2233433 5667889
Q ss_pred EEEcCCCCceeee
Q 010287 446 QVQTPSRPSRPLG 458 (513)
Q Consensus 446 ~~~~~~~~~l~~~ 458 (513)
+.|+|++++++..
T Consensus 415 ~~~spdg~~l~~~ 427 (723)
T 1xfd_A 415 ASFSHSMDFFLLK 427 (723)
T ss_dssp EEECTTSSEEEEE
T ss_pred EEECCCCCEEEEE
Confidence 9999999988764
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=1.9e-19 Score=167.13 Aligned_cols=269 Identities=9% Similarity=0.080 Sum_probs=166.1
Q ss_pred ccccccccEEEEEEcCCCCEEEeecC---CCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccc
Q 010287 30 EEVQEVDIISAIEFDKSGDHLATGDR---GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (513)
Q Consensus 30 ~~~~h~~~V~~v~~sp~g~~latg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (513)
....+...+..++|+|+|+ |++++. ++.|.+|++.++... ....+..+.
T Consensus 34 ~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~---------------------~~~~~~~~~------ 85 (347)
T 3hfq_A 34 GLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH---------------------KLNTVVAPG------ 85 (347)
T ss_dssp EEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE---------------------EEEEEEEES------
T ss_pred eeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE---------------------EeeeeecCC------
Confidence 3445667888999999999 554443 689999999665421 112223333
Q ss_pred ccccccccceeEEEeecCCCceEEEee-cCCeEEEEEcc-CceeeeeeccccCCCcccCCCCcccCcccccCceeccCCC
Q 010287 107 KSLEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (513)
Q Consensus 107 ~~~~~~~~i~~i~~~~~~~~~~l~s~s-~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 184 (513)
..+..++|+| ++++|++++ .++.|.+|++. ++............. .|.
T Consensus 86 ------~~p~~~a~sp--dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~--------------------~p~-- 135 (347)
T 3hfq_A 86 ------TPPAYVAVDE--ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGH--------------------GPR-- 135 (347)
T ss_dssp ------CCCSEEEEET--TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCC--------------------CSS--
T ss_pred ------CCCEEEEECC--CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCC--------------------CCC--
Confidence 6688999955 788888887 78999999995 333322221110000 000
Q ss_pred ccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCC
Q 010287 185 CGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 263 (513)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~ 263 (513)
...+...+.+++|+|+++++++. .++.|.+|++...
T Consensus 136 -------------------------------------------~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~ 172 (347)
T 3hfq_A 136 -------------------------------------------PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA 172 (347)
T ss_dssp -------------------------------------------TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred -------------------------------------------ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence 01122458889999999955555 5899999999833
Q ss_pred cceeeecccCccccc-cccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC--cccccccceeeccccCCCCcccccccc
Q 010287 264 NQSFNIVDVKPANME-DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFTEII 340 (513)
Q Consensus 264 ~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (513)
....... .+. .....+..++|+|++..++++...++.|.+|++.. +.. .....+...... ....
T Consensus 173 g~~~~~~-----~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~--~~~~~~~~~~~~------~~~~ 239 (347)
T 3hfq_A 173 GQLSEQS-----VLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF--TQLGIVKTIPAD------YTAH 239 (347)
T ss_dssp SCEEEEE-----EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE--EEEEEEESSCTT------CCSC
T ss_pred CcEEEee-----eEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce--EEeeeeeecCCC------CCCC
Confidence 3222111 111 12335788999999933555567789999999874 332 111111111000 0011
Q ss_pred ccEEEEEEeecCCEEEE-Ee-CCeEEEEEccCCCC--CeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe
Q 010287 341 ASISDIKFARNGRHILS-RD-YMTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 416 (513)
Q Consensus 341 ~~v~~i~~sp~~~~l~~-~~-~~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 416 (513)
..+..++|+|||++|++ .. ++.|.+|++...+. .+..+..+... +..++|+|||++|++++
T Consensus 240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~spdg~~l~v~~ 304 (347)
T 3hfq_A 240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDF---------------PRDFDLDPTEAFVVVVN 304 (347)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSC---------------CCEEEECTTSSEEEEEE
T ss_pred CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCC---------------cCeEEECCCCCEEEEEE
Confidence 35889999999998865 44 39999999974222 22233222211 23799999999988877
Q ss_pred C-CCcEEEEecC
Q 010287 417 Y-SNLFRVFGCS 427 (513)
Q Consensus 417 ~-dg~i~vwd~~ 427 (513)
. ++.|.+|++.
T Consensus 305 ~~~~~v~v~~~d 316 (347)
T 3hfq_A 305 QNTDNATLYARD 316 (347)
T ss_dssp TTTTEEEEEEEC
T ss_pred cCCCcEEEEEEe
Confidence 5 5899999553
No 147
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=1.5e-19 Score=166.76 Aligned_cols=239 Identities=9% Similarity=0.050 Sum_probs=150.8
Q ss_pred eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC---cEEEE
Q 010287 235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLI 309 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~vw 309 (513)
+ +++|+|++++++++ .++.|.+||+.+++.... .+..+..+..+++|+|++ ++++++..++ .|.+|
T Consensus 43 ~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~-------~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~ 113 (331)
T 3u4y_A 43 V-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVV-------AIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSY 113 (331)
T ss_dssp E-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEE-------EEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEE
T ss_pred c-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEE-------ecccCCCCccceEECCCC-CEEEEecCCCCcccEEEE
Confidence 5 89999999977665 489999999987664122 233444544459999999 7777555553 89999
Q ss_pred EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEE-eC-Ce-EEEEEccCCCCCeeeeeccccccc
Q 010287 310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DY-MT-LKLWDINMDSGPVATFQVHEHLRP 386 (513)
Q Consensus 310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~~-~~-v~iwd~~~~~~~~~~~~~~~~~~~ 386 (513)
|+.+++. ...+... ....+++|+|+|++++++ .+ +. |.+|++...+... ........
T Consensus 114 d~~~~~~----~~~~~~~-------------~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~-~~~~~~~~-- 173 (331)
T 3u4y_A 114 SFLKNKF----ISTIPIP-------------YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF-DTGQEFIS-- 173 (331)
T ss_dssp ETTTTEE----EEEEECC-------------TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE-EEEEEEEC--
T ss_pred ECCCCCe----EEEEECC-------------CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEe-ecCCcccc--
Confidence 9988765 2222221 346899999999866654 44 77 9999998533222 11100000
Q ss_pred ccccccccCCccceeeEEEeCCCCEEEEE-eCCCcEEEEecCCCCcc--ceeecCCCCceeEEEEcCCCCceeee-cCCC
Q 010287 387 KLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAE--STTLEASKNPMRRQVQTPSRPSRPLG-SLSG 462 (513)
Q Consensus 387 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~ 462 (513)
... ....++|+|+|++++++ ..++.|++||+.++... ...+... ..+..++++|++++++.+ ..++
T Consensus 174 ------~~~---~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~ 243 (331)
T 3u4y_A 174 ------GGT---RPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTV 243 (331)
T ss_dssp ------SSS---SEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEE
T ss_pred ------CCC---CccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCC
Confidence 000 12379999999976554 46899999999877431 3444433 556789999999977554 4567
Q ss_pred eEEEecCC--CCCccc-cCCccc---cccCCeeEEEEeCCCCEEEEEc--CCcEEEEe
Q 010287 463 VVRRVKGA--DNSALD-ANGNAF---DFSMKLLHLAWHPSENSIACAA--SNSLYMYY 512 (513)
Q Consensus 463 ~i~~~~~~--~~~~~~-~~~~~~---~~~~~i~~~~~sp~~~~la~~~--~~~~~i~~ 512 (513)
.|.+.+.. +..... ...... .....+..++|+||+++|++++ ++.+.+|.
T Consensus 244 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 244 DVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp EEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 77772211 110000 000000 0112235689999999887554 45788886
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.86 E-value=3.6e-20 Score=184.56 Aligned_cols=269 Identities=13% Similarity=0.042 Sum_probs=179.3
Q ss_pred ccccEEEEEEcCCCCEEEeecC-CCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccc
Q 010287 34 EVDIISAIEFDKSGDHLATGDR-GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (513)
Q Consensus 34 h~~~V~~v~~sp~g~~latg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (513)
+..+|.+++|+|||++||+++. ||+++||++.+++. ..+..|. .
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~------------------------~~lt~~~-----------~ 64 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET------------------------VKLNREP-----------I 64 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE------------------------EECCSSC-----------C
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc------------------------Eeeeccc-----------c
Confidence 4678999999999999999887 99999999865543 1222232 0
Q ss_pred ccceeEEEeecCCCceEEEeec---CCeEEEEEccC---ceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287 113 EKINKIRWCQSANSALYLLSTN---DKTIKLWKVQE---KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~---d~~i~vw~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 186 (513)
..+..++|+| + ..+++++. +...++|.+.. +.....
T Consensus 65 ~~~~~~~~sp--d-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l----------------------------------- 106 (582)
T 3o4h_A 65 NSVLDPHYGV--G-RVILVRDVSKGAEQHALFKVNTSRPGEEQRL----------------------------------- 106 (582)
T ss_dssp SEECEECTTC--S-EEEEEEECSTTSCCEEEEEEETTSTTCCEEC-----------------------------------
T ss_pred cccccccCCC--C-eEEEEeccCCCCcceEEEEEeccCCCccccc-----------------------------------
Confidence 4688999965 5 56666654 45567766543 111100
Q ss_pred ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCE--EEEEcCCeEEEEEcCCCc
Q 010287 187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET--FISADDLRINLWNLEISN 264 (513)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~s~~d~~i~vwd~~~~~ 264 (513)
... ..+...+|+|+++. ++++.++.+.+||+.+++
T Consensus 107 ------------------------------------------~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~ 143 (582)
T 3o4h_A 107 ------------------------------------------EAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGG 143 (582)
T ss_dssp ------------------------------------------TTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE
T ss_pred ------------------------------------------cCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCc
Confidence 000 11334577787754 444555556699998664
Q ss_pred ceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC----CcEEEEEcCCcccccccceeeccccCCCCcccccccc
Q 010287 265 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 340 (513)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (513)
.. . +..+.. .+++|+||| +.|++++.+ +.|++||+.+++. +. +.+|.
T Consensus 144 ~~-~--------l~~~~~--~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~~-----~~------------l~~~~ 194 (582)
T 3o4h_A 144 LR-E--------LARLPG--FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGGL-----RV------------FDSGE 194 (582)
T ss_dssp EE-E--------EEEESS--CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCCC-----EE------------ECCSS
T ss_pred EE-E--------eecCCC--ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCCc-----eE------------eecCC
Confidence 32 2 122222 789999999 888888777 7899999987764 22 23344
Q ss_pred ccEEEEEEeecCCEEEEEeC-C--eEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC
Q 010287 341 ASISDIKFARNGRHILSRDY-M--TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 417 (513)
Q Consensus 341 ~~v~~i~~sp~~~~l~~~~~-~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 417 (513)
+.+..++|||||+.|++++. + .|++||+.. ++.. .+..+........ ..+....+|+|||.++++++.
T Consensus 195 ~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~-~~~~-~~~~~~~~~~~~~-------~~~~~~~~~spdg~~~~~~~~ 265 (582)
T 3o4h_A 195 GSFSSASISPGMKVTAGLETAREARLVTVDPRD-GSVE-DLELPSKDFSSYR-------PTAITWLGYLPDGRLAVVARR 265 (582)
T ss_dssp CEEEEEEECTTSCEEEEEECSSCEEEEEECTTT-CCEE-ECCCSCSHHHHHC-------CSEEEEEEECTTSCEEEEEEE
T ss_pred CccccceECCCCCEEEEccCCCeeEEEEEcCCC-CcEE-EccCCCcChhhhh-------hccccceeEcCCCcEEEEEEc
Confidence 67899999999999997654 6 899999985 5544 5544443221000 000112339999988899999
Q ss_pred CCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCe
Q 010287 418 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 463 (513)
Q Consensus 418 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 463 (513)
|+.+++|++ + +... .....+..+.++ +++++++++.+..
T Consensus 266 ~g~~~l~~~--g-~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~ 304 (582)
T 3o4h_A 266 EGRSAVFID--G-ERVE---APQGNHGRVVLW-RGKLVTSHTSLST 304 (582)
T ss_dssp TTEEEEEET--T-EEEC---CCSSEEEEEEEE-TTEEEEEEEETTE
T ss_pred CCcEEEEEE--C-Ceec---cCCCceEEEEec-CCEEEEEEcCCCC
Confidence 999999999 4 2222 334678889999 9999888877644
No 149
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=4.9e-20 Score=170.35 Aligned_cols=233 Identities=13% Similarity=0.067 Sum_probs=158.1
Q ss_pred eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-----------
Q 010287 235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS----------- 301 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~----------- 301 (513)
+.+++|+|+++.++.+ .++.|.+||+.+++....+. .. ....+...+..++|+|++ +.++++.
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~-~~--~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~ 111 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID-LS--TPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFE 111 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE-CC--BTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEE
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE-cC--CcccccccccceEECCCC-CEEEEEeccccccccccc
Confidence 5678999999876554 58999999998766443221 00 000022356789999998 7777775
Q ss_pred -CCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeec
Q 010287 302 -SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQV 380 (513)
Q Consensus 302 -~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~ 380 (513)
.++.|.+||+.+++. ...+... ..+.+++|+|++++|+++ ++.|.+||+.+ ++....+..
T Consensus 112 ~~~~~i~v~d~~~~~~----~~~~~~~-------------~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~-~~~~~~~~~ 172 (337)
T 1pby_B 112 VQPTRVALYDAETLSR----RKAFEAP-------------RQITMLAWARDGSKLYGL-GRDLHVMDPEA-GTLVEDKPI 172 (337)
T ss_dssp ECCCEEEEEETTTTEE----EEEEECC-------------SSCCCEEECTTSSCEEEE-SSSEEEEETTT-TEEEEEECS
T ss_pred ccCceEEEEECCCCcE----EEEEeCC-------------CCcceeEECCCCCEEEEe-CCeEEEEECCC-CcEeeeeec
Confidence 579999999987654 2222221 346778999999988887 57899999986 665555543
Q ss_pred ccccccccccccccCCccceeeEEEeCCCCEEEEEeCC-C-----------------------cEEEEecCCCCccceee
Q 010287 381 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-N-----------------------LFRVFGCSEGSAESTTL 436 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g-----------------------~i~vwd~~~~~~~~~~~ 436 (513)
+.... .+.|+|+++.|+..+.+ + .|.+||+.+++.....+
T Consensus 173 ~~~~~----------------~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 236 (337)
T 1pby_B 173 QSWEA----------------ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV 236 (337)
T ss_dssp TTTTT----------------TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred cccCC----------------CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeec
Confidence 33111 23678888876554432 2 46899999875443444
Q ss_pred cCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 437 EASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 437 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
..+...+..++++|++++++++ ++.|.+.+..... . ...+.....+.+++|+||+++|++++ ++.+.+|.
T Consensus 237 ~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~---~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 237 RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA---S-IKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE---E-EEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc---C-cceecCCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 5566677789999999999888 7888883222111 1 11222346789999999999888666 67788886
No 150
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=5.6e-19 Score=164.40 Aligned_cols=233 Identities=11% Similarity=0.056 Sum_probs=152.5
Q ss_pred eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCc-ccc-ccccCCeEEEEEeCCCCeEEEEEe--CCCcEEE
Q 010287 235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKP-ANM-EDLTEVITSAEFHPTHCNMLAYSS--SKGSIRL 308 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~-~~~-~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~v 308 (513)
+..++|+|+++.++.+ .++.|.+||..+++....+. ... ... ......+.+++|+|++ +.+++++ .++.|.+
T Consensus 91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLV-LDDRKRTEEVRPLQPRELVADDAT-NTVYISGIGKESVIWV 168 (353)
T ss_dssp CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEE-SCCCCCCSSCCCCEEEEEEEETTT-TEEEEEEESSSCEEEE
T ss_pred cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEe-cCCCccccccCCCCCceEEECCCC-CEEEEEecCCCceEEE
Confidence 5668899999966655 48999999998776443221 000 000 0001127889999998 5555444 4889999
Q ss_pred EEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccc
Q 010287 309 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPK 387 (513)
Q Consensus 309 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~ 387 (513)
||+.+++. ...+... ...+.+++|+|+++++++++. +.|.+||+.+ ++....+........
T Consensus 169 ~d~~~~~~----~~~~~~~------------~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~- 230 (353)
T 3vgz_A 169 VDGGNIKL----KTAIQNT------------GKMSTGLALDSEGKRLYTTNADGELITIDTAD-NKILSRKKLLDDGKE- 230 (353)
T ss_dssp EETTTTEE----EEEECCC------------CTTCCCCEEETTTTEEEEECTTSEEEEEETTT-TEEEEEEECCCSSSC-
T ss_pred EcCCCCce----EEEecCC------------CCccceEEECCCCCEEEEEcCCCeEEEEECCC-CeEEEEEEcCCCCCC-
Confidence 99988765 2222211 134678899999999988775 9999999986 666655544221000
Q ss_pred cccccccCCccceeeEEEeCCCCEEEEEeC-CCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCcee-eecCCCeEE
Q 010287 388 LCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP-LGSLSGVVR 465 (513)
Q Consensus 388 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~ 465 (513)
..+..++|+|+++++++++. ++.|.+||+.+++. ...+.... + ..++++|++++++ +...++.|.
T Consensus 231 ----------~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~-~-~~~~~s~dg~~l~v~~~~~~~v~ 297 (353)
T 3vgz_A 231 ----------HFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI-LAKVAAPE-S-LAVLFNPARNEAYVTHRQAGKVS 297 (353)
T ss_dssp ----------CCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE-EEEEECSS-C-CCEEEETTTTEEEEEETTTTEEE
T ss_pred ----------cccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE-EEEEEcCC-C-ceEEECCCCCEEEEEECCCCeEE
Confidence 01237899999998776664 59999999988743 33443322 2 5789999999654 455789998
Q ss_pred EecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc
Q 010287 466 RVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 504 (513)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 504 (513)
+.+..... . ...+.....+..++|+||+++|+++.
T Consensus 298 ~~d~~~~~---~-~~~~~~~~~~~~~~~s~dg~~l~v~~ 332 (353)
T 3vgz_A 298 VIDAKSYK---V-VKTFDTPTHPNSLALSADGKTLYVSV 332 (353)
T ss_dssp EEETTTTE---E-EEEEECCSEEEEEEECTTSCEEEEEE
T ss_pred EEECCCCe---E-EEEEecCCCCCeEEEcCCCCEEEEEE
Confidence 83322111 1 11223355789999999999877655
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=1.1e-18 Score=165.92 Aligned_cols=229 Identities=10% Similarity=0.114 Sum_probs=144.7
Q ss_pred ccccccEEEEEEcCCCCEEE----eecCCCcEEEEEeeCCCCCC-CccCccccccccccCCCcceEeccccCCCCccccc
Q 010287 32 VQEVDIISAIEFDKSGDHLA----TGDRGGRVVLFERTDTRDNG-GQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (513)
Q Consensus 32 ~~h~~~V~~v~~sp~g~~la----tg~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (513)
..|...|++++|+|+|++|| +|+.|+.|+|||+.+..... ... ........+.+|.
T Consensus 89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~-------------~~~~~~~~~~~h~------ 149 (434)
T 2oit_A 89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQK-------------RPFAYHKLLKDAG------ 149 (434)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSC-------------CCSEEEECCCSGG------
T ss_pred ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCc-------------ceeeeeeccCCCC------
Confidence 44667899999999999999 89999999999986541000 000 0111234466777
Q ss_pred ccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (513)
Q Consensus 107 ~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 186 (513)
..|.+++|+|. ++.+|++++.||+|++||++++.....
T Consensus 150 ------~~V~~v~~~p~-~~~~las~s~Dg~v~iwD~~~~~~~~~----------------------------------- 187 (434)
T 2oit_A 150 ------GMVIDMKWNPT-VPSMVAVCLADGSIAVLQVTETVKVCA----------------------------------- 187 (434)
T ss_dssp ------GSEEEEEECSS-CTTEEEEEETTSCEEEEEESSSEEEEE-----------------------------------
T ss_pred ------CceEEEEECCC-CCCEEEEEECCCeEEEEEcCCCcceee-----------------------------------
Confidence 88999999773 256899999999999999987642211
Q ss_pred ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcc
Q 010287 187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 265 (513)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~ 265 (513)
..+|...|.+++|+|++++|++| .||.|++||.+ +..
T Consensus 188 -----------------------------------------~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~ 225 (434)
T 2oit_A 188 -----------------------------------------TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE 225 (434)
T ss_dssp -----------------------------------------EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE
T ss_pred -----------------------------------------ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc
Confidence 23566789999999999999999 79999999998 332
Q ss_pred eeeecccCccccccccCCeEEEEEeCCCCeEEEE-EeCCC------cEEEEEcCCcccccccceeeccccCCCCcccccc
Q 010287 266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKG------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 338 (513)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (513)
...+ .........|...|.+++|++++ .++++ +..+| .+++|+++...... ...+....... ..+.+
T Consensus 226 ~~~~-~~~~~~~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~--~~~~~~~~~~~--~~~~~ 299 (434)
T 2oit_A 226 KKVI-PCPPFYESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKH--PEIFVNFMEPC--YGSCT 299 (434)
T ss_dssp EEEE-CCCTTCCTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCC--CCEEEECCCSS--CCCCS
T ss_pred cccc-cCCcccCCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCC--CcceEecccCC--CCCCC
Confidence 2211 11000011244589999999987 55543 44453 38999998653210 01111111100 00011
Q ss_pred ccccEEEEEEeecCCEEEEEeC--CeEEEEEcc
Q 010287 339 IIASISDIKFARNGRHILSRDY--MTLKLWDIN 369 (513)
Q Consensus 339 ~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~ 369 (513)
.+.+-..+.+-++.+++++++. ..|.+....
T Consensus 300 ~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 300 ERQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp SSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred CcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 1222333444477777777553 667777654
No 152
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.85 E-value=1.7e-18 Score=177.09 Aligned_cols=335 Identities=9% Similarity=0.051 Sum_probs=190.2
Q ss_pred cEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccce
Q 010287 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (513)
Q Consensus 37 ~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~ 116 (513)
...+++|+|||++|+++ ||.|++|++.+++.. ..+.+|... .......
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~-----------------------~~~~~~~~~-------~~~~~~~ 65 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS-----------------------VFLENSTFD-------EFGHSIN 65 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEE-----------------------EEECTTTTT-------TCCSCCC
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceE-----------------------EEEechhhh-------hhccccc
Confidence 45689999999999997 899999998877631 223444410 0001234
Q ss_pred eEEEeecCCCceEEEeecC---------CeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287 117 KIRWCQSANSALYLLSTND---------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (513)
Q Consensus 117 ~i~~~~~~~~~~l~s~s~d---------~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 187 (513)
.+.|+ +|+++++.++.+ +.+.+||+.+++...+
T Consensus 66 ~~~~S--pdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l------------------------------------ 107 (740)
T 4a5s_A 66 DYSIS--PDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE------------------------------------ 107 (740)
T ss_dssp EEEEC--TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS------------------------------------
T ss_pred ceEEC--CCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEc------------------------------------
Confidence 57885 488899998876 5566999988864331
Q ss_pred cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCccee
Q 010287 188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSF 267 (513)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~ 267 (513)
..|...+...+|||||+.|+.+.++.|++|++.++...
T Consensus 108 -----------------------------------------~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~- 145 (740)
T 4a5s_A 108 -----------------------------------------ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSY- 145 (740)
T ss_dssp -----------------------------------------SCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCE-
T ss_pred -----------------------------------------ccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceE-
Confidence 23345588999999999999998899999999866532
Q ss_pred eecccCccccccccCC-----------------eEEEEEeCCCCeEEEEEeCCCc-EEEEEcCCcccc------------
Q 010287 268 NIVDVKPANMEDLTEV-----------------ITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALC------------ 317 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~-----------------i~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~------------ 317 (513)
++ +..++... ...+.|+||| +.|+.++.|.. +.+|++......
T Consensus 146 ~l------t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~y 218 (740)
T 4a5s_A 146 RI------TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPY 218 (740)
T ss_dssp EC------CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEEC
T ss_pred EE------cCCCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecC
Confidence 21 11222222 2358999999 77777764432 444443210000
Q ss_pred --------cccceeecccc---CC--CCccc-----cccccccEEEEEEeecCCEEEEEe----C-CeEEEEEccCCCC-
Q 010287 318 --------DTHSKLFEEQE---AP--GTRSF-----FTEIIASISDIKFARNGRHILSRD----Y-MTLKLWDINMDSG- 373 (513)
Q Consensus 318 --------~~~~~~~~~~~---~~--~~~~~-----~~~~~~~v~~i~~sp~~~~l~~~~----~-~~v~iwd~~~~~~- 373 (513)
...+..++... .. ..... +.+|...+..++|+|||+.++... . ..|.+||+.+ ++
T Consensus 219 p~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t-g~~ 297 (740)
T 4a5s_A 219 PKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE-SSG 297 (740)
T ss_dssp CBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET-TTT
T ss_pred CCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC-Ccc
Confidence 00011111111 00 00000 113567799999999999776532 2 4799999986 54
Q ss_pred ---C--eeee--ecccccccccccccccCCccceeeEEEeCCCCEEE-EEe-CC--CcEEEEecCCCCccceeecCCCCc
Q 010287 374 ---P--VATF--QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGS-YS--NLFRVFGCSEGSAESTTLEASKNP 442 (513)
Q Consensus 374 ---~--~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~-~d--g~i~vwd~~~~~~~~~~~~~~~~~ 442 (513)
+ +..+ ..+...+.. .......|+|||+.|+ ..+ .+ ..|++||+.++.. ..+......
T Consensus 298 ~~~~~~~~~l~~~~~~~~v~~----------~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~--~~lT~g~~~ 365 (740)
T 4a5s_A 298 RWNCLVARQHIEMSTTGWVGR----------FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC--TFITKGTWE 365 (740)
T ss_dssp EEEECGGGCEEEECSSSCSSS----------SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC--EESCCSSSC
T ss_pred ccceeEEEEeeeccCCceEcc----------CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce--EecccCCEE
Confidence 1 2222 223322110 0012578999999877 555 33 4688888876532 233333444
Q ss_pred eeEEEEcCCCCceee-ecC--C----CeEEEecCCCCCcc-ccCCccccccCCeeEEEEeCCCCEEEEEc
Q 010287 443 MRRQVQTPSRPSRPL-GSL--S----GVVRRVKGADNSAL-DANGNAFDFSMKLLHLAWHPSENSIACAA 504 (513)
Q Consensus 443 v~~~~~~~~~~~l~~-~~~--d----~~i~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 504 (513)
+..+.. ++++.++. ++. + ..+..+........ .+.............++|||++++++...
T Consensus 366 v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~ 434 (740)
T 4a5s_A 366 VIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRC 434 (740)
T ss_dssp EEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEE
T ss_pred EEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEe
Confidence 544432 44665543 333 1 23333111110000 01110011235688999999999887443
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=1.4e-18 Score=161.27 Aligned_cols=213 Identities=9% Similarity=0.054 Sum_probs=135.2
Q ss_pred ccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCcc----ccccccCCeEEEEEeCCCCeEEEEEeCCC
Q 010287 231 HDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA----NMEDLTEVITSAEFHPTHCNMLAYSSSKG 304 (513)
Q Consensus 231 h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 304 (513)
+...+..++|+|++++|+++ .++.|.+|++........+...... ....+...+.+++|+|++ +++++...++
T Consensus 84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~ 162 (347)
T 3hfq_A 84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSD 162 (347)
T ss_dssp ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTT
T ss_pred CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCC
Confidence 33457789999999988876 4899999999643322211100000 001123458899999999 6777777789
Q ss_pred cEEEEEcC-CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCee---ee
Q 010287 305 SIRLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVA---TF 378 (513)
Q Consensus 305 ~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~---~~ 378 (513)
.|.+||+. ++.... ...+.... ...+..++|+|||+++++++ . +.|.+|++......+. .+
T Consensus 163 ~v~~~~~~~~g~~~~--~~~~~~~~-----------g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~ 229 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSE--QSVLTMEA-----------GFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIV 229 (347)
T ss_dssp EEEEEEECTTSCEEE--EEEEECCT-----------TCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEECCCCcEEE--eeeEEcCC-----------CCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeee
Confidence 99999998 443211 11111111 12567899999999777754 3 8999999884212221 11
Q ss_pred ecccccccccccccccCCccceeeEEEeCCCCEEE-EEeCCCcEEEEecCCCC--ccceeecCCCCceeEEEEcCCCCce
Q 010287 379 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEGS--AESTTLEASKNPMRRQVQTPSRPSR 455 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l 455 (513)
....... .....+..++|+|||++|+ +...++.|.+|++.... .....+..+...+..++|+|++++|
T Consensus 230 ~~~~~~~---------~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l 300 (347)
T 3hfq_A 230 KTIPADY---------TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFV 300 (347)
T ss_dssp ESSCTTC---------CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEE
T ss_pred eecCCCC---------CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEE
Confidence 1111000 0001134799999999875 55678999999987332 2224455556667899999999988
Q ss_pred eeecC-CCeEEE
Q 010287 456 PLGSL-SGVVRR 466 (513)
Q Consensus 456 ~~~~~-d~~i~~ 466 (513)
++++. ++.+.+
T Consensus 301 ~v~~~~~~~v~v 312 (347)
T 3hfq_A 301 VVVNQNTDNATL 312 (347)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEEcCCCcEEE
Confidence 87765 488887
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=1.8e-19 Score=179.58 Aligned_cols=258 Identities=10% Similarity=0.041 Sum_probs=177.2
Q ss_pred ccceeEEEeecCCCceEEEeec-CCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccC
Q 010287 113 EKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 191 (513)
.+|++++|+| ||+.|++++. ||+++||++.+++...+.
T Consensus 22 ~~~~~~~~~~--DG~~la~~s~~~g~~~lw~~~~g~~~~lt--------------------------------------- 60 (582)
T 3o4h_A 22 VEKYSLQGVV--DGDKLLVVGFSEGSVNAYLYDGGETVKLN--------------------------------------- 60 (582)
T ss_dssp SCEEEEEEEE--TTTEEEEEEEETTEEEEEEEETTEEEECC---------------------------------------
T ss_pred cchheeecCC--CCCeEEEEEccCCceeEEEEcCCCcEeee---------------------------------------
Confidence 5699999977 8889998876 999999998766543321
Q ss_pred CCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEc----CCeEEEEEcCC--Ccc
Q 010287 192 CASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD----DLRINLWNLEI--SNQ 265 (513)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----d~~i~vwd~~~--~~~ 265 (513)
..+...+..++|+|| +.+++++ +....+|.+.. ...
T Consensus 61 -------------------------------------~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~ 102 (582)
T 3o4h_A 61 -------------------------------------REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGE 102 (582)
T ss_dssp -------------------------------------SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTC
T ss_pred -------------------------------------cccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCc
Confidence 122245788999999 6666653 45566665543 222
Q ss_pred eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEE
Q 010287 266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 345 (513)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 345 (513)
...+ .. ...+...+|+|++...+++.+.++.+.+||+.+++.. .... +.. .+
T Consensus 103 ~~~l--------~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~----~l~~-------------~~~--~~ 154 (582)
T 3o4h_A 103 EQRL--------EA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR----ELAR-------------LPG--FG 154 (582)
T ss_dssp CEEC--------TT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE----EEEE-------------ESS--CE
T ss_pred cccc--------cC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE----Eeec-------------CCC--ce
Confidence 2221 11 1123456788887555555555566669999877531 1111 112 78
Q ss_pred EEEeecCCEEEEEe-C----CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC-
Q 010287 346 IKFARNGRHILSRD-Y----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN- 419 (513)
Q Consensus 346 i~~sp~~~~l~~~~-~----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg- 419 (513)
++|||||++|++++ + ..|++||+.. ++. ..+..+... +..++|||||++|+++..++
T Consensus 155 ~~~spDG~~la~~~~~~~~~~~i~~~d~~~-g~~-~~l~~~~~~---------------~~~~~~SpDG~~l~~~~~~~~ 217 (582)
T 3o4h_A 155 FVSDIRGDLIAGLGFFGGGRVSLFTSNLSS-GGL-RVFDSGEGS---------------FSSASISPGMKVTAGLETARE 217 (582)
T ss_dssp EEEEEETTEEEEEEEEETTEEEEEEEETTT-CCC-EEECCSSCE---------------EEEEEECTTSCEEEEEECSSC
T ss_pred EEECCCCCEEEEEEEcCCCCeEEEEEcCCC-CCc-eEeecCCCc---------------cccceECCCCCEEEEccCCCe
Confidence 99999999999643 3 6799999885 443 455555443 34899999999999888888
Q ss_pred -cEEEEecCCCCccceeecCCCCceeEEE--------EcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeE
Q 010287 420 -LFRVFGCSEGSAESTTLEASKNPMRRQV--------QTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLH 490 (513)
Q Consensus 420 -~i~vwd~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~ 490 (513)
.|++||+.++... .+..+...+..+. |+|+|.++++++.|+.+++...++ ... .....|.+
T Consensus 218 ~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~g~----~~~----~~~~~v~~ 287 (582)
T 3o4h_A 218 ARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFIDGE----RVE----APQGNHGR 287 (582)
T ss_dssp EEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEETTE----EEC----CCSSEEEE
T ss_pred eEEEEEcCCCCcEE--EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEECC----eec----cCCCceEE
Confidence 8999999987443 6677777777777 999998889999999999922211 111 23467899
Q ss_pred EEEeCCCCEEEEEcC
Q 010287 491 LAWHPSENSIACAAS 505 (513)
Q Consensus 491 ~~~sp~~~~la~~~~ 505 (513)
++|+ +++++++++.
T Consensus 288 ~~~s-dg~~l~~~s~ 301 (582)
T 3o4h_A 288 VVLW-RGKLVTSHTS 301 (582)
T ss_dssp EEEE-TTEEEEEEEE
T ss_pred EEec-CCEEEEEEcC
Confidence 9999 9998887663
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=3e-19 Score=169.91 Aligned_cols=230 Identities=9% Similarity=0.008 Sum_probs=151.9
Q ss_pred ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (513)
Q Consensus 34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (513)
....++++++++++.++++|+.++ ++||+............ +.. .... +.....+.+..
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~-----------~~~-~~~~--------~~~~~~~~~~~ 93 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGD-----------DPN-KIVD--------KVQGLLVPMKF 93 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTC-----------CTT-CEEE--------CCCCEEECCSS
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhccccc-----------Ccc-cccc--------cCccccccCCC
Confidence 345789999999999999999887 99998643211000000 000 0000 00011122336
Q ss_pred cceeEEEeecCCCceEE----EeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 114 KINKIRWCQSANSALYL----LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 114 ~i~~i~~~~~~~~~~l~----s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
.|.+++|+| ++.+|+ +++.|++|++||+.++..... ..
T Consensus 94 ~v~~l~~sp--dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~---~~--------------------------------- 135 (434)
T 2oit_A 94 PIHHLALSC--DNLTLSACMMSSEYGSIIAFFDVRTFSNEAK---QQ--------------------------------- 135 (434)
T ss_dssp CEEEEEECT--TSCEEEEEEEETTTEEEEEEEEHHHHHCTTC---SS---------------------------------
T ss_pred cccEEEEcC--CCCEEEEEEeccCCCceEEEEEccccccCCc---CC---------------------------------
Confidence 799999955 778898 788899999999976520000 00
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccC-CCEEEEE-cCCeEEEEEcCCCccee
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSF 267 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~vwd~~~~~~~~ 267 (513)
...+ .....+.+|...|.+++|+|+ +.+|+++ .||+|++||++++....
T Consensus 136 --------------~~~~---------------~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~ 186 (434)
T 2oit_A 136 --------------KRPF---------------AYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVC 186 (434)
T ss_dssp --------------CCCS---------------EEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEE
T ss_pred --------------ccee---------------eeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCccee
Confidence 0000 000113578899999999997 7889988 79999999999764332
Q ss_pred eecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEE
Q 010287 268 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 347 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 347 (513)
...+|...|.+++|+|++ ++|++|+.||.|++||++ +.. ...+..+... ...|...+.+++
T Consensus 187 --------~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~----~~~~~~~~~~-----~~~~~~~v~~v~ 247 (434)
T 2oit_A 187 --------ATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQE----KKVIPCPPFY-----ESDHPVRVLDVL 247 (434)
T ss_dssp --------EEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCE----EEEECCCTTC-----CTTSCEEEEEEE
T ss_pred --------eccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-Ccc----cccccCCccc-----CCCCceeEEEEE
Confidence 234578899999999998 999999999999999987 332 2222222110 112345799999
Q ss_pred EeecCCEEEEEe--C------CeEEEEEccC
Q 010287 348 FARNGRHILSRD--Y------MTLKLWDINM 370 (513)
Q Consensus 348 ~sp~~~~l~~~~--~------~~v~iwd~~~ 370 (513)
|++++.++++.+ + ..+++|+++.
T Consensus 248 w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 248 WIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred EecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 999988887632 2 2499999985
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=2.3e-17 Score=153.95 Aligned_cols=206 Identities=13% Similarity=0.115 Sum_probs=128.5
Q ss_pred CeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeeccc------CccccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287 234 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDV------KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 305 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 305 (513)
....+++ ++++|+++ .++.|.+|++........+... .+.....+...+.+++|+|++..++++...++.
T Consensus 101 ~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 178 (361)
T 3scy_A 101 DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQ 178 (361)
T ss_dssp CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTE
T ss_pred CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCE
Confidence 3566777 78877776 5899999999754433221100 000111233456889999999334555556899
Q ss_pred EEEEEcCCccc------cccc--ceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--CCeEEEEEccCCCCC-
Q 010287 306 IRLIDMRQSAL------CDTH--SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGP- 374 (513)
Q Consensus 306 i~vwd~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~~~v~iwd~~~~~~~- 374 (513)
|.+|++..... .... ...... .+...+..++|+|+|+++++++ ++.|.+|++.. +..
T Consensus 179 v~v~~~~~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~ 246 (361)
T 3scy_A 179 IHKFNINPNANADNKEKFLTKGTPEAFKV-----------APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-GMLD 246 (361)
T ss_dssp EEEEEECTTCCTTTCCCCEEEEEEEEEEC-----------CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET-TEEE
T ss_pred EEEEEEcCCCCcccccceeecccccceec-----------CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-CceE
Confidence 99999875431 1000 001111 1124578899999999888765 39999999984 432
Q ss_pred -eeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC--CCcEEEEecC--CCCc-cceeecCCCCceeEEEE
Q 010287 375 -VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY--SNLFRVFGCS--EGSA-ESTTLEASKNPMRRQVQ 448 (513)
Q Consensus 375 -~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~--~~~~-~~~~~~~~~~~v~~~~~ 448 (513)
+..+...... ......++|+|||++|+++.. ++.|.+|++. ++.. ....+.. ...+..++|
T Consensus 247 ~~~~~~~~~~~------------~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~ 313 (361)
T 3scy_A 247 EIQTVAADTVN------------AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFII 313 (361)
T ss_dssp EEEEEESCSSC------------CCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEE
T ss_pred EeEEEecCCCC------------CCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEE
Confidence 1222111110 001237999999999876665 4899999986 3322 2233333 456779999
Q ss_pred cCCCCceeeec-CCCeEEE
Q 010287 449 TPSRPSRPLGS-LSGVVRR 466 (513)
Q Consensus 449 ~~~~~~l~~~~-~d~~i~~ 466 (513)
+|++++|++++ .++.|.+
T Consensus 314 spdg~~l~~~~~~~~~v~v 332 (361)
T 3scy_A 314 TPNGKYLLVACRDTNVIQI 332 (361)
T ss_dssp CTTSCEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEECCCCCEEE
Confidence 99999888776 6788887
No 157
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.84 E-value=2.8e-19 Score=165.22 Aligned_cols=272 Identities=10% Similarity=0.090 Sum_probs=179.1
Q ss_pred CEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEecccc-CCCCcccccccccccc-cceeEEEeecCC
Q 010287 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKSLEIEE-KINKIRWCQSAN 125 (513)
Q Consensus 48 ~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~-~i~~i~~~~~~~ 125 (513)
++|++++.++.|.+||..+++.. ..+. ++. . .+..++|+| +
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~-----------------------~~~~~~~~------------~~~~~~~~~s~--d 44 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVD-----------------------KVITIADA------------GPTPMVPMVAP--G 44 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEE-----------------------EEEECTTC------------TTCCCCEEECT--T
T ss_pred cEEEEcCCCCeEEEEECCCCcEE-----------------------EEEEcCCC------------CCCccceEEcC--C
Confidence 47899999999999998765431 1111 111 1 478899954 7
Q ss_pred CceEE-EeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCC--
Q 010287 126 SALYL-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG-- 202 (513)
Q Consensus 126 ~~~l~-s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-- 202 (513)
++.++ ++..++.|.+||+.+++............ ....+..++++|+|+.+ +...
T Consensus 45 g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~----------~~~~~~~~~~s~dg~~l------------~~~~~~ 102 (337)
T 1pby_B 45 GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE----------RVKSLFGAALSPDGKTL------------AIYESP 102 (337)
T ss_dssp SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE----------EEECTTCEEECTTSSEE------------EEEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc----------ccccccceEECCCCCEE------------EEEecc
Confidence 76654 45668999999999887655443321000 00123367899999876 3332
Q ss_pred ----------CCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeeccc
Q 010287 203 ----------GVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDV 272 (513)
Q Consensus 203 ----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~ 272 (513)
.++.|.+|++...+. ...+ .....+.+++|+|++++|+++ ++.|.+||+.+++....+
T Consensus 103 ~~~~~~~~~~~~~~i~v~d~~~~~~------~~~~--~~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~--- 170 (337)
T 1pby_B 103 VRLELTHFEVQPTRVALYDAETLSR------RKAF--EAPRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDK--- 170 (337)
T ss_dssp EEECSSCEEECCCEEEEEETTTTEE------EEEE--ECCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEE---
T ss_pred cccccccccccCceEEEEECCCCcE------EEEE--eCCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeee---
Confidence 468899999865332 1111 123457789999999988887 688999999876543221
Q ss_pred CccccccccCCeEEEEEeCCCCeEEEEEe-CCC-----------------------cEEEEEcCCcccccccceeecccc
Q 010287 273 KPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG-----------------------SIRLIDMRQSALCDTHSKLFEEQE 328 (513)
Q Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg-----------------------~i~vwd~~~~~~~~~~~~~~~~~~ 328 (513)
....+... +.|+|++ ..++..+ .++ .|.+||+.+++.. ...
T Consensus 171 ---~~~~~~~~---~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-----~~~--- 235 (337)
T 1pby_B 171 ---PIQSWEAE---TYAQPDV-LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-----MRE--- 235 (337)
T ss_dssp ---CSTTTTTT---TBCCCBC-CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-----EEE---
T ss_pred ---eccccCCC---ceeCCCc-cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-----Eee---
Confidence 11111122 2678887 4443333 233 4688998877642 111
Q ss_pred CCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC
Q 010287 329 APGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 408 (513)
Q Consensus 329 ~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 408 (513)
+..+...+.+++|+|++++++++ ++.|.+||+.+ ++.+..+..... +..++|+|+
T Consensus 236 -------~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~----------------~~~~~~s~d 290 (337)
T 1pby_B 236 -------VRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEK-NASIKRVPLPHS----------------YYSVNVSTD 290 (337)
T ss_dssp -------EEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTT-TEEEEEEECSSC----------------CCEEEECTT
T ss_pred -------cCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCC-CcCcceecCCCc----------------eeeEEECCC
Confidence 11222467889999999999988 68999999986 666665543322 238999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCC
Q 010287 409 GGRVATGSYSNLFRVFGCSEGS 430 (513)
Q Consensus 409 ~~~l~~~~~dg~i~vwd~~~~~ 430 (513)
+++|++++.++.|++||+.+++
T Consensus 291 g~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 291 GSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp SCEEEEESBSSEEEEEETTTCC
T ss_pred CCEEEEEcCCCcEEEEECcCCc
Confidence 9999998999999999999873
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=1.5e-17 Score=155.18 Aligned_cols=289 Identities=10% Similarity=0.088 Sum_probs=170.1
Q ss_pred ccccEEEEEEcCCCCEEEeecCC----CcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 34 EVDIISAIEFDKSGDHLATGDRG----GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 34 h~~~V~~v~~sp~g~~latg~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
+...+..++|+|+|++|++++.+ +.|.+|++..... ..........+.
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g-------------------~~~~~~~~~~~~--------- 99 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG-------------------TLHLLNTQKTMG--------- 99 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT-------------------EEEEEEEEECSS---------
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC-------------------cEEEeeEeccCC---------
Confidence 67788889999999999998875 7999999875311 001111222222
Q ss_pred cccccceeEEEeecCCCceEEEee-cCCeEEEEEccCceee-eeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s-~d~~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 187 (513)
.....+++ +++++++++ .++.|.+|++...... ........ .|.
T Consensus 100 ---~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~------------------------~g~--- 145 (361)
T 3scy_A 100 ---ADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEF------------------------KGS--- 145 (361)
T ss_dssp ---SCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEEC------------------------CCC---
T ss_pred ---CCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEc------------------------cCC---
Confidence 33556666 566777765 6899999999753211 11000000 000
Q ss_pred cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcc
Q 010287 188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQ 265 (513)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~ 265 (513)
. . .. ...+...+.+++|+|++++++++ .++.|.+|++.....
T Consensus 146 ---------------~--~---------------~~----~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~ 189 (361)
T 3scy_A 146 ---------------G--P---------------DK----ERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNAN 189 (361)
T ss_dssp ---------------C--S---------------CT----TTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCC
T ss_pred ---------------C--C---------------Cc----cccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCC
Confidence 0 0 00 01223447889999999977665 489999999875442
Q ss_pred ----e-eeecccCccccccccCCeEEEEEeCCCCeEEEEEe-CCCcEEEEEcCCcccccccceeeccccCCCCccccccc
Q 010287 266 ----S-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 339 (513)
Q Consensus 266 ----~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (513)
. +................+..++|+|++ +++++++ .++.|.+||+.++.... ...+.. ...+
T Consensus 190 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~--~~~~~~---------~~~~ 257 (361)
T 3scy_A 190 ADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDE--IQTVAA---------DTVN 257 (361)
T ss_dssp TTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEE--EEEEES---------CSSC
T ss_pred cccccceeecccccceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEE--eEEEec---------CCCC
Confidence 1 100000000112234567899999999 6665555 69999999998654311 111111 1112
Q ss_pred cccEEEEEEeecCCEEEEEe-C--CeEEEEEccCC-CC--CeeeeecccccccccccccccCCccceeeEEEeCCCCEEE
Q 010287 340 IASISDIKFARNGRHILSRD-Y--MTLKLWDINMD-SG--PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA 413 (513)
Q Consensus 340 ~~~v~~i~~sp~~~~l~~~~-~--~~v~iwd~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 413 (513)
......++|+|||++|+++. + +.|.+|++... ++ .+..+.. ... +..++|+|||++|+
T Consensus 258 ~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~---------------~~~~~~spdg~~l~ 321 (361)
T 3scy_A 258 AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIH---------------PRNFIITPNGKYLL 321 (361)
T ss_dssp CCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSC---------------CCEEEECTTSCEEE
T ss_pred CCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCC---------------CceEEECCCCCEEE
Confidence 23568999999999887643 3 78999999631 33 2222222 111 23799999999988
Q ss_pred EEe-CCCcEEEEecC--CCCccceee-cCCCCceeEEEEc
Q 010287 414 TGS-YSNLFRVFGCS--EGSAESTTL-EASKNPMRRQVQT 449 (513)
Q Consensus 414 ~~~-~dg~i~vwd~~--~~~~~~~~~-~~~~~~v~~~~~~ 449 (513)
+++ .++.|.+|++. ++. +.... ..+...+.++.|.
T Consensus 322 ~~~~~~~~v~v~~~d~~~g~-~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 322 VACRDTNVIQIFERDQATGL-LTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEETTTTEEEEEEECTTTCC-EEECSCCEECSSEEEEEEE
T ss_pred EEECCCCCEEEEEEECCCCc-EeecceeeeCCCCeEEEEc
Confidence 887 67899997554 442 21111 1233345566653
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=1.5e-18 Score=161.30 Aligned_cols=252 Identities=8% Similarity=0.042 Sum_probs=165.4
Q ss_pred EEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEE
Q 010287 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (513)
Q Consensus 40 ~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~ 119 (513)
.+++++++.++++++.+++|.+||..+++.. ..+..+. ...+..++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-----------------------~~~~~~~-----------~~~~~~~~ 49 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVY-----------------------KSCVMPD-----------KFGPGTAM 49 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEE-----------------------EEEECSS-----------CCSSCEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEE-----------------------EEEecCC-----------CCCCceeE
Confidence 4568888999999999999999998765531 1222111 02478899
Q ss_pred EeecCCCceEE-EeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCC
Q 010287 120 WCQSANSALYL-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (513)
Q Consensus 120 ~~~~~~~~~l~-s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 198 (513)
|+| +++.++ +...++.|.+||+.+++..........+
T Consensus 50 ~s~--dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~---------------------------------------- 87 (349)
T 1jmx_B 50 MAP--DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP---------------------------------------- 87 (349)
T ss_dssp ECT--TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST----------------------------------------
T ss_pred ECC--CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc----------------------------------------
Confidence 954 776555 4457899999999988755432211000
Q ss_pred cCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cC------------CeEEEEEcCCCcc
Q 010287 199 FPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD------------LRINLWNLEISNQ 265 (513)
Q Consensus 199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d------------~~i~vwd~~~~~~ 265 (513)
..+...+.+++|+|++++++++ .+ +.|.+||+.+++.
T Consensus 88 ------------------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 137 (349)
T 1jmx_B 88 ------------------------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE 137 (349)
T ss_dssp ------------------------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred ------------------------------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc
Confidence 0001236678999999999887 34 9999999986432
Q ss_pred eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccC--C-------------
Q 010287 266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA--P------------- 330 (513)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~------------- 330 (513)
...+ ....+...+.+++|+|++ + +++++ +.|.+||+.+++... .+..... +
T Consensus 138 ~~~~------~~~~~~~~~~~~~~s~dg-~-l~~~~--~~i~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 203 (349)
T 1jmx_B 138 AKPV------RTFPMPRQVYLMRAADDG-S-LYVAG--PDIYKMDVKTGKYTV----ALPLRNWNRKGYSAPDVLYFWPH 203 (349)
T ss_dssp BCCS------EEEECCSSCCCEEECTTS-C-EEEES--SSEEEECTTTCCEEE----EECSTTCCCTTBCCCBCCCCCCC
T ss_pred ccee------eeccCCCcccceeECCCC-c-EEEcc--CcEEEEeCCCCceec----cccccccCCccccCccceeeecC
Confidence 2111 111233458899999999 6 44443 349999998876422 1111100 0
Q ss_pred -CC-c---------------------------------------cccccccccEEEEEEee-cCCEEEEEeCCeEEEEEc
Q 010287 331 -GT-R---------------------------------------SFFTEIIASISDIKFAR-NGRHILSRDYMTLKLWDI 368 (513)
Q Consensus 331 -~~-~---------------------------------------~~~~~~~~~v~~i~~sp-~~~~l~~~~~~~v~iwd~ 368 (513)
.. . .-+..+...+..++|+| ++++++++ ++.|.+||+
T Consensus 204 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~ 282 (349)
T 1jmx_B 204 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDL 282 (349)
T ss_dssp CCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEET
T ss_pred CCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEEC
Confidence 00 0 00001123567888999 99999988 789999999
Q ss_pred cCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 369 NMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
.+ ++.+..+..... +..++|+|++++|++++.++.|++||+.++
T Consensus 283 ~~-~~~~~~~~~~~~----------------~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 283 KQ-RKLIKAANLDHT----------------YYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp TT-TEEEEEEECSSC----------------CCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred cc-CeEEEEEcCCCC----------------ccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 86 666665543322 237999999999988888999999999877
No 160
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=4.9e-18 Score=160.23 Aligned_cols=273 Identities=11% Similarity=0.139 Sum_probs=170.1
Q ss_pred EEEcCCCCEEEeecC-CCc--EEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccccee
Q 010287 41 IEFDKSGDHLATGDR-GGR--VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (513)
Q Consensus 41 v~~sp~g~~latg~~-dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~ 117 (513)
.+|||||++||.++. +|. |.+||+.+++. .....++. ..+..
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~-----------------------~~lt~~~~------------~~~~~ 85 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA-----------------------TQLTEGRG------------DNTFG 85 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEE-----------------------EECCCSSC------------BCSSS
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCce-----------------------EEeeeCCC------------CCccc
Confidence 789999999998887 674 77778766543 12223343 44557
Q ss_pred EEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCC
Q 010287 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (513)
Q Consensus 118 i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 197 (513)
+.|+| +++.|+.++.++.|++||+.+++...+.....
T Consensus 86 ~~~sp--dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~----------------------------------------- 122 (388)
T 3pe7_A 86 GFLSP--DDDALFYVKDGRNLMRVDLATLEENVVYQVPA----------------------------------------- 122 (388)
T ss_dssp CEECT--TSSEEEEEETTTEEEEEETTTCCEEEEEECCT-----------------------------------------
T ss_pred eEEcC--CCCEEEEEeCCCeEEEEECCCCcceeeeechh-----------------------------------------
Confidence 78954 88899999999999999999887554432211
Q ss_pred CcCCCCCCceeceeeccCCcccccceeeEeeccccCCeE--EEEeccCCCEEEEE-----------------------cC
Q 010287 198 SFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHIN--SISNNSDGETFISA-----------------------DD 252 (513)
Q Consensus 198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~l~s~-----------------------~d 252 (513)
..+. ...++++++.++.. .+
T Consensus 123 -----------------------------------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (388)
T 3pe7_A 123 -----------------------------------EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPC 167 (388)
T ss_dssp -----------------------------------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCC
T ss_pred -----------------------------------hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCc
Confidence 1111 11235666655531 24
Q ss_pred CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeC-CCCeEEEEEeCC------CcEEEEEcCCcccccccceeec
Q 010287 253 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSK------GSIRLIDMRQSALCDTHSKLFE 325 (513)
Q Consensus 253 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~ 325 (513)
..|.+||+.+++.. .+..+...+..+.|+| ++ +.|+.+..+ ..|.++|+..+.. +.+.
T Consensus 168 ~~l~~~d~~~g~~~---------~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~ 232 (388)
T 3pe7_A 168 CRLMRVDLKTGEST---------VILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNM-----RKVK 232 (388)
T ss_dssp EEEEEEETTTCCEE---------EEEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCC-----EESC
T ss_pred ceEEEEECCCCceE---------EeecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCce-----EEee
Confidence 68999999876432 2334566789999999 88 777776653 3777778765432 1111
Q ss_pred cccCCCCccccccccccEEEEEEeecCCEEEEEe--C-C---eEEEEEccCCCCCee--eeecccccccccccccccCCc
Q 010287 326 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-M---TLKLWDINMDSGPVA--TFQVHEHLRPKLCDLYENDSI 397 (513)
Q Consensus 326 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~-~---~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 397 (513)
.... ...+....|+|||+.|+..+ . . .|++||+.+ ++... .+..+.....
T Consensus 233 ~~~~----------~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~~~~~~~~~----------- 290 (388)
T 3pe7_A 233 THAE----------GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET-LENRQLTSMPACSHLMS----------- 290 (388)
T ss_dssp CCCT----------TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT-CCEEEEEEECCEEEEEE-----------
T ss_pred eCCC----------CcccccceECCCCCEEEEEecCCCCCcceEEEEecCC-CceEEEEcCCCceeeee-----------
Confidence 1100 02477889999999776532 2 2 399999986 44322 2221100000
Q ss_pred cceeeEEEeCCCCEEEEE---------eCCCcEEEEecCCCCccceeecCCCC-----------ceeEEEEcCCCCceee
Q 010287 398 FDKFECCLSGDGGRVATG---------SYSNLFRVFGCSEGSAESTTLEASKN-----------PMRRQVQTPSRPSRPL 457 (513)
Q Consensus 398 ~~v~~~~~s~~~~~l~~~---------~~dg~i~vwd~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~ 457 (513)
......|+|||+.|+.. ..+..|++||+.++.. ..+..+.. .+..++|+|+|+.|+.
T Consensus 291 -~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~ 367 (388)
T 3pe7_A 291 -NYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ--HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILF 367 (388)
T ss_dssp -CTTSSEEEEEECCC------------CCCCEEEEEETTTTEE--EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred -cCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce--EEeccccCcccccccccccCCCCccCCCCCCEEEE
Confidence 00134799999988753 4567899999987632 33444443 4678899999998876
Q ss_pred ec-CCCeEEE
Q 010287 458 GS-LSGVVRR 466 (513)
Q Consensus 458 ~~-~d~~i~~ 466 (513)
.+ .++...|
T Consensus 368 ~s~~~g~~~l 377 (388)
T 3pe7_A 368 TSDVHGKPAL 377 (388)
T ss_dssp EECTTSSCEE
T ss_pred EecCCCceeE
Confidence 65 3555444
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=2.9e-16 Score=146.48 Aligned_cols=268 Identities=8% Similarity=-0.026 Sum_probs=161.5
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEcc-CceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccC
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 191 (513)
..+..++|+| ++++|++++.+ .|.+|++. +++.......... + .+..++++|+|+.+.++..
T Consensus 40 ~~~~~~a~sp--dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-------g-------~~~~~~~spdg~~l~~~~~ 102 (365)
T 1jof_A 40 EPISWMTFDH--ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-------G-------HPRANDADTNTRAIFLLAA 102 (365)
T ss_dssp CCCSEEEECT--TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-------S-------SGGGGCTTSCCEEEEEEEC
T ss_pred CCCcEEEECC--CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-------C-------CCccEEECCCCCEEEEEEe
Confidence 3578899954 78888888887 99999997 7765443221110 0 1225788999984211111
Q ss_pred CCCCCCCcCCC----CCCceeceeecc-CCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcC-CC
Q 010287 192 CASNDSSFPPG----GVSSLRLPVVTS-QETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLE-IS 263 (513)
Q Consensus 192 ~~~~~~~~~~~----~~~~i~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~-~~ 263 (513)
.. ..+...+. .++.+.+|++.. .+.. .....+...+...+.+++|+|+|++++++ .++.|++|++. ++
T Consensus 103 ~~-~~~~~~~~~~~~~~g~v~v~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g 178 (365)
T 1jof_A 103 KQ-PPYAVYANPFYKFAGYGNVFSVSETGKLE---KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASG 178 (365)
T ss_dssp SS-TTCCEEEEEESSSCCEEEEEEECTTCCEE---EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred cC-CcceeccceeecCCceEEEEccCCCCcCc---ceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCC
Confidence 00 00000000 577899999864 2221 11111111345678999999999988876 47899999998 44
Q ss_pred cceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC-CCcEEEEEcC--Cccccc--ccceeeccccCCCCcccccc
Q 010287 264 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMR--QSALCD--THSKLFEEQEAPGTRSFFTE 338 (513)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~vwd~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~ 338 (513)
+.. .+.. .....|...+..++|+|++ +++++++. ++.|.+|++. +++... ..+..+... +.+
T Consensus 179 ~~~-~~~~---~~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~--------~~g 245 (365)
T 1jof_A 179 EVE-LVGS---VDAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG--------IPD 245 (365)
T ss_dssp CEE-EEEE---EECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT--------CCC
T ss_pred CEE-Eeee---EecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC--------cCC
Confidence 422 1100 0111235668999999999 66666664 7899999875 343210 001111110 112
Q ss_pred ccc------cEEEEE-EeecCCEEEEEeC--C-----eEEEEEccCCCCCeee---eecccccccccccccccCCcccee
Q 010287 339 IIA------SISDIK-FARNGRHILSRDY--M-----TLKLWDINMDSGPVAT---FQVHEHLRPKLCDLYENDSIFDKF 401 (513)
Q Consensus 339 ~~~------~v~~i~-~sp~~~~l~~~~~--~-----~v~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~ 401 (513)
|.. .+..++ |+|||++|++++. . .|.+|++...++.... ...+... ..
T Consensus 246 ~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~---------------~~ 310 (365)
T 1jof_A 246 RDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG---------------GH 310 (365)
T ss_dssp BCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC---------------TT
T ss_pred cccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCC---------------cc
Confidence 222 588999 9999999887542 3 8999999632443321 2112111 12
Q ss_pred eEEEeC---CCCEEEEEeC-CCcEEEEecCCC
Q 010287 402 ECCLSG---DGGRVATGSY-SNLFRVFGCSEG 429 (513)
Q Consensus 402 ~~~~s~---~~~~l~~~~~-dg~i~vwd~~~~ 429 (513)
.++|+| ||++|++++. ++.|.+|++...
T Consensus 311 ~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 311 SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred cceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 688999 8999998886 489999998754
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.78 E-value=4.4e-17 Score=151.29 Aligned_cols=248 Identities=8% Similarity=0.060 Sum_probs=141.2
Q ss_pred eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccc----cCCeEEEEEeCCCCeEEEEEeCC-----
Q 010287 235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDL----TEVITSAEFHPTHCNMLAYSSSK----- 303 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~l~~~~~d----- 303 (513)
+..++|+|+++.++.+ .++.|.+||+.+++....+ ..... ...+..++|+|++ +++++++.+
T Consensus 45 ~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~------~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~ 117 (349)
T 1jmx_B 45 PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA------NLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLN 117 (349)
T ss_dssp SCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE------ESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECS
T ss_pred CceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE------EcccccccccccccceEECCCC-CEEEEEcccccccc
Confidence 5678999999876554 5899999999876544322 11110 2336789999999 777777755
Q ss_pred -------CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCee
Q 010287 304 -------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVA 376 (513)
Q Consensus 304 -------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~ 376 (513)
+.|.+||+.+++... .+..+..+ ..+.+++|+|+|+ +++++ +.|.+||+.+ ++...
T Consensus 118 ~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~-------------~~~~~~~~s~dg~-l~~~~-~~i~~~d~~~-~~~~~ 180 (349)
T 1jmx_B 118 DHYVVKPPRLEVFSTADGLEAK-PVRTFPMP-------------RQVYLMRAADDGS-LYVAG-PDIYKMDVKT-GKYTV 180 (349)
T ss_dssp SCEEECCCEEEEEEGGGGGGBC-CSEEEECC-------------SSCCCEEECTTSC-EEEES-SSEEEECTTT-CCEEE
T ss_pred cccccCCCeEEEEECCCccccc-eeeeccCC-------------CcccceeECCCCc-EEEcc-CcEEEEeCCC-Cceec
Confidence 899999998765321 12222221 3578899999999 55543 4599999986 66666
Q ss_pred eeecccccccc-----cccccc----cCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCCCccceeecCCCCceeEE
Q 010287 377 TFQVHEHLRPK-----LCDLYE----NDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMRRQ 446 (513)
Q Consensus 377 ~~~~~~~~~~~-----~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 446 (513)
.+......... ...++. .........+++++++....... ....+..++..++......+..+...+..+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (349)
T 1jmx_B 181 ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTG 260 (349)
T ss_dssp EECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEE
T ss_pred cccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceee
Confidence 55433210000 000000 00000112456665542211000 001122244444422222233345567789
Q ss_pred EEcC-CCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 447 VQTP-SRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 447 ~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
+++| ++++++++ ++.|.+.+..... . ...+.....+.+++|+|++++|++++ ++.+.+|.
T Consensus 261 ~~sp~dg~~l~~~--~~~v~~~d~~~~~---~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d 322 (349)
T 1jmx_B 261 LRSPKDPNQIYGV--LNRLAKYDLKQRK---L-IKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFN 322 (349)
T ss_dssp EECSSCTTEEEEE--ESEEEEEETTTTE---E-EEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEE
T ss_pred EecCCCCCEEEEE--cCeEEEEECccCe---E-EEEEcCCCCccceEECCCCCEEEEecCCCeEEEEe
Confidence 9999 99999888 7888883221111 1 01122345678999999998887665 67788886
No 163
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.77 E-value=4.1e-17 Score=166.87 Aligned_cols=282 Identities=7% Similarity=-0.022 Sum_probs=173.1
Q ss_pred cEEEEEEcCCCCEEEeecC---------CCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccc
Q 010287 37 IISAIEFDKSGDHLATGDR---------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (513)
Q Consensus 37 ~V~~v~~sp~g~~latg~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (513)
.|.+++|||||++||+++. ++.|++||+.+++... ...+ .
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~---------------------~~~l---~------- 109 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR---------------------GNEL---P------- 109 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC---------------------SSCC---C-------
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc---------------------ceec---C-------
Confidence 3899999999999999876 6899999987765310 0001 1
Q ss_pred cccccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (513)
Q Consensus 108 ~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 187 (513)
..+..++|+| ||+.|+.+. |+.|++|++.+++...+..... .
T Consensus 110 -----~~~~~~~~SP--DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~-~----------------------------- 151 (719)
T 1z68_A 110 -----RPIQYLCWSP--VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGR-E----------------------------- 151 (719)
T ss_dssp -----SSBCCEEECS--STTCEEEEE-TTEEEEESSTTSCCEECCCCCB-T-----------------------------
T ss_pred -----cccccceECC--CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCC-c-----------------------------
Confidence 4488899965 888888875 7899999998876543211000 0
Q ss_pred cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeecccc---------CCeEEEEeccCCCEEEEE-cC-C---
Q 010287 188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHD---------YHINSISNNSDGETFISA-DD-L--- 253 (513)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~l~s~-~d-~--- 253 (513)
.. + ..++. ....+++|+|||+.|+++ .| +
T Consensus 152 -----------------~~--v------------------~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~ 194 (719)
T 1z68_A 152 -----------------NK--I------------------FNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIP 194 (719)
T ss_dssp -----------------TT--E------------------EESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSC
T ss_pred -----------------CC--e------------------EcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCc
Confidence 00 0 01221 112578888888888876 33 1
Q ss_pred ------------------------------eEEEEEcCCCcce--eeecccCccccccccCCeEEEEEeCCCCeEEEEEe
Q 010287 254 ------------------------------RINLWNLEISNQS--FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS 301 (513)
Q Consensus 254 ------------------------------~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 301 (513)
.|++||+.++... ..+. .+..+.+|...+..++|+||+ +++++..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~SpD~-~~~~~~~ 271 (719)
T 1z68_A 195 VIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP--VPAMIASSDYYFSWLTWVTDE-RVCLQWL 271 (719)
T ss_dssp EEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC--CCHHHHTSCEEEEEEEESSSS-EEEEEEE
T ss_pred eEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc--CCccCCCCcceEEEeEEeCCC-eEEEEEe
Confidence 7889999865431 1110 112345678889999999997 7777644
Q ss_pred CC----CcEEEEE----cCCcccccccceeeccccCCCCccccccccccEE-----EEEEeecCCEEEE--Ee-C--CeE
Q 010287 302 SK----GSIRLID----MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS-----DIKFARNGRHILS--RD-Y--MTL 363 (513)
Q Consensus 302 ~d----g~i~vwd----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~i~~sp~~~~l~~--~~-~--~~v 363 (513)
.. ..|.+|| +.+++.. ..+... ..+|...+. .+.|+|||+.|+. .. + ..|
T Consensus 272 ~~~~~~~~l~~~d~~~~~~~g~~~----~~~~~~--------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l 339 (719)
T 1z68_A 272 KRVQNVSVLSICDFREDWQTWDCP----KTQEHI--------EESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHI 339 (719)
T ss_dssp ESSTTEEEEEEEEECSSSSSEECC----GGGEEE--------EECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEE
T ss_pred ccccCeEEEEEEcccCCCCCCceE----EEEecc--------cccCCceEccccCCccEECCCCCeEEEEEEccCCceEE
Confidence 33 2488899 7666542 111100 012223444 6889999996654 32 2 367
Q ss_pred EEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC-----CcEEEEecCC--CCccceee
Q 010287 364 KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-----NLFRVFGCSE--GSAESTTL 436 (513)
Q Consensus 364 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~--~~~~~~~~ 436 (513)
.+||+.. ++ ...+..+... +..+.++ +++.|+..+.+ +..++|.+.. +......+
T Consensus 340 ~~~~~~~-~~-~~~lt~~~~~---------------v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l 401 (719)
T 1z68_A 340 HYIKDTV-EN-AIQITSGKWE---------------AINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCV 401 (719)
T ss_dssp EEESSCS-TT-CEECSCSSSC---------------EEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEES
T ss_pred EEEECCC-Cc-eEecccCceE---------------EEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceec
Confidence 7777664 33 3444332221 2356666 78777766554 7888998764 21111222
Q ss_pred c----CCCCceeEEEEcCCCCceee
Q 010287 437 E----ASKNPMRRQVQTPSRPSRPL 457 (513)
Q Consensus 437 ~----~~~~~v~~~~~~~~~~~l~~ 457 (513)
. ++...+..+.|+|++++++.
T Consensus 402 ~~~~~~~~~~~~~~~~s~dg~~l~~ 426 (719)
T 1z68_A 402 TCHLRKERCQYYTASFSDYAKYYAL 426 (719)
T ss_dssp STTTTTTTBCBEEEEECGGGSSEEE
T ss_pred cCccCCCCCceEEEEECCCCCEEEE
Confidence 2 25566778999999998774
No 164
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.75 E-value=4.5e-16 Score=157.59 Aligned_cols=203 Identities=9% Similarity=0.008 Sum_probs=126.3
Q ss_pred ccCCeEEEEeccCCCEEEEE-cC----------CeEEEEEcCCC-----cceeeecccCccccc-cccCCeEEEEEeCCC
Q 010287 231 HDYHINSISNNSDGETFISA-DD----------LRINLWNLEIS-----NQSFNIVDVKPANME-DLTEVITSAEFHPTH 293 (513)
Q Consensus 231 h~~~v~~~~~~~~~~~l~s~-~d----------~~i~vwd~~~~-----~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~ 293 (513)
|...+.+++|+|||+.|+++ .+ ..|++||+.+. .... .+. .+...+..++|+|||
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~~SpDG 199 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR--------ELSDDAHRFVTGPRLSPDG 199 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE--------ESSCSCSSEECCCEECTTS
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee--------EEEecCCCcccCceECCCC
Confidence 34457889999999999987 44 58999999862 2221 233 445677889999999
Q ss_pred CeEEEEEeCC--------CcEEEEEcC-CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-C--
Q 010287 294 CNMLAYSSSK--------GSIRLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M-- 361 (513)
Q Consensus 294 ~~~l~~~~~d--------g~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~-- 361 (513)
+.|+.++.+ ..|.+||+. ++... . ...+ ..++...+..+.|+|||+++++++. +
T Consensus 200 -~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~-~-~~~l-----------~~~~~~~~~~~~~spdg~l~~~~~~~~~~ 265 (662)
T 3azo_A 200 -RQAVWLAWDHPRMPWEGTELKTARVTEDGRFA-D-TRTL-----------LGGPEEAIAQAEWAPDGSLIVATDRTGWW 265 (662)
T ss_dssp -SEEEEEEECTTCCTTTCEEEEEEEECTTSCEE-E-EEEE-----------EEETTBCEEEEEECTTSCEEEEECTTSSC
T ss_pred -CEEEEEECCCCCCCCCCcEEEEEEECCCCccc-c-cEEe-----------CCCCCceEcceEECCCCeEEEEECCCCCe
Confidence 788777755 379999998 45210 0 1111 1122357899999999997766664 6
Q ss_pred eEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEE--ecCCCCccceeecCC
Q 010287 362 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF--GCSEGSAESTTLEAS 439 (513)
Q Consensus 362 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw--d~~~~~~~~~~~~~~ 439 (513)
.|.+||+.. ++.......+..... .....++..++|+|+++++++++. +.++|| |+.++ ....+..+
T Consensus 266 ~l~~~~~~~-~~~~~l~~~~~~~~~-------p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~--~~~~l~~~ 334 (662)
T 3azo_A 266 NLHRVDPAT-GAATQLCRREEEFAG-------PLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG--ELVDAAGP 334 (662)
T ss_dssp EEEEECTTT-CCEEESSCCSSBSSC-------CCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT--EEEECCSS
T ss_pred EEEEEECCC-CceeecccccccccC-------ccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC--cEEEecCC
Confidence 666666643 443332222211100 000011337899999999999998 999999 54433 34666677
Q ss_pred CCceeEE-EEcCCCCceeeecCCCeEEE
Q 010287 440 KNPMRRQ-VQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 440 ~~~v~~~-~~~~~~~~l~~~~~d~~i~~ 466 (513)
...+..+ .+..+.-.+++++.+....+
T Consensus 335 ~~~~~~~~s~~~~~~~~~~~~~~~~~~i 362 (662)
T 3azo_A 335 WTEWAATLTVSGTRAVGVAASPRTAYEV 362 (662)
T ss_dssp CCEEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred CCeEEEEEecCCCEEEEEEcCCCCCCEE
Confidence 7677666 44433334445555544444
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.74 E-value=6.4e-16 Score=158.03 Aligned_cols=204 Identities=11% Similarity=0.059 Sum_probs=122.9
Q ss_pred EEEEeccCCCEEEEE-cC---------CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287 236 NSISNNSDGETFISA-DD---------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 305 (513)
Q Consensus 236 ~~~~~~~~~~~l~s~-~d---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 305 (513)
..++|||||++|+.+ .+ +.+.+||+.+++.. .+..+...+..++|+||| +.|+.+ .++.
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~---------~l~~~~~~~~~~~~SPdG-~~la~~-~~~~ 133 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI---------TEERIPNNTQWVTWSPVG-HKLAYV-WNND 133 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC---------CSSCCCTTEEEEEECSST-TCEEEE-ETTE
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE---------EcccCCCcceeeEECCCC-CEEEEE-ECCe
Confidence 458899999999987 43 67789999976532 345567789999999999 777776 5789
Q ss_pred EEEEEcCCcccccccceeeccccCCCCcccccccc---------ccEEEEEEeecCCEEEEEe-C-CeEEEE--------
Q 010287 306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII---------ASISDIKFARNGRHILSRD-Y-MTLKLW-------- 366 (513)
Q Consensus 306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~i~~sp~~~~l~~~~-~-~~v~iw-------- 366 (513)
|.+||+.++.... .+..+... ..+.++. +....+.|||||+.|+... + +.+.+|
T Consensus 134 i~~~~~~~~~~~~---lt~~g~~~----~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~ 206 (740)
T 4a5s_A 134 IYVKIEPNLPSYR---ITWTGKED----IIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE 206 (740)
T ss_dssp EEEESSTTSCCEE---CCSCCBTT----TEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST
T ss_pred EEEEECCCCceEE---EcCCCCcc----ceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC
Confidence 9999998776321 01111110 0111221 2234589999999999754 2 444444
Q ss_pred ---------------------------EccC---CCC-CeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEE
Q 010287 367 ---------------------------DINM---DSG-PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 415 (513)
Q Consensus 367 ---------------------------d~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 415 (513)
|+.. ... ....+..... + ...-.-+..++|+|||+.++..
T Consensus 207 ~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~-------~--~~~~~~~~~~~wspdg~~~~~~ 277 (740)
T 4a5s_A 207 SLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS-------M--LIGDHYLCDVTWATQERISLQW 277 (740)
T ss_dssp TCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH-------H--HTSCEEEEEEEEEETTEEEEEE
T ss_pred CCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc-------C--CCCCeEEEEEEEeCCCeEEEEE
Confidence 4432 100 1111111000 0 0001114589999999976654
Q ss_pred eC----CCcEEEEecCCCC----cc-ceee--cCCCCcee-----EEEEcCCCCcee-eec-CCCeEEE
Q 010287 416 SY----SNLFRVFGCSEGS----AE-STTL--EASKNPMR-----RQVQTPSRPSRP-LGS-LSGVVRR 466 (513)
Q Consensus 416 ~~----dg~i~vwd~~~~~----~~-~~~~--~~~~~~v~-----~~~~~~~~~~l~-~~~-~d~~i~~ 466 (513)
.. +..|++||+.++. +. ...+ +.+...+. ...|+|||+.++ ..+ .+|.-.|
T Consensus 278 ~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l 346 (740)
T 4a5s_A 278 LRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHI 346 (740)
T ss_dssp EESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEE
T ss_pred eCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEE
Confidence 32 3479999999875 11 1222 45555544 688999999877 554 4554444
No 166
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.74 E-value=6.7e-15 Score=132.36 Aligned_cols=272 Identities=10% Similarity=0.163 Sum_probs=176.2
Q ss_pred cccccccccccceeccccccccccccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCc
Q 010287 10 AAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE 89 (513)
Q Consensus 10 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (513)
++.....|.+...||.+. ...+|-..+.+++++|+|.++++...++.|.+|+....... .+
T Consensus 6 ~~~~~~~~~~~~~~g~~g--~~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~-----~~------------ 66 (286)
T 1q7f_A 6 SQIKRQRMIYHCKFGEFG--VMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKF-----QF------------ 66 (286)
T ss_dssp --CCCEEECEEEEECCBS--SSTTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEE-----EE------------
T ss_pred cccccceeEEEEeccCCC--CCCCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEE-----Ee------------
Confidence 345556677766777543 34567788999999999999898888999999996522110 00
Q ss_pred ceEeccccCCCCcccccccccccccceeEEEeecCCCceEEEeec-CCeEEEEEccCceeeeeeccccCCCcccCCCCcc
Q 010287 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (513)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (513)
.......+|. ..+..+++.+ .++.++++... ++.|++|+. +++......
T Consensus 67 -~~~~~~~~~~------------~~p~~i~~~~-~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~~--------------- 116 (286)
T 1q7f_A 67 -GECGKRDSQL------------LYPNRVAVVR-NSGDIIVTERSPTHQIQIYNQ-YGQFVRKFG--------------- 116 (286)
T ss_dssp -CCBSSSTTCB------------SSEEEEEEET-TTTEEEEEECGGGCEEEEECT-TSCEEEEEC---------------
T ss_pred -cccCCCcccc------------cCceEEEEEc-CCCeEEEEcCCCCCEEEEECC-CCcEEEEec---------------
Confidence 0000001222 4578888842 34545555433 889999994 443322110
Q ss_pred cCcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEE
Q 010287 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 248 (513)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 248 (513)
..+...+.++++++++++++
T Consensus 117 ------------------------------------------------------------~~~~~~~~~i~~~~~g~l~v 136 (286)
T 1q7f_A 117 ------------------------------------------------------------ATILQHPRGVTVDNKGRIIV 136 (286)
T ss_dssp ------------------------------------------------------------TTTCSCEEEEEECTTSCEEE
T ss_pred ------------------------------------------------------------CccCCCceEEEEeCCCCEEE
Confidence 11223478899999998887
Q ss_pred EE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccc
Q 010287 249 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 327 (513)
Q Consensus 249 s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 327 (513)
+. .++.|.+||.. ++....+ ....+...+..++++|++ +++++...++.|++||... .. +..+...
T Consensus 137 ~~~~~~~i~~~~~~-g~~~~~~------~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g-~~----~~~~~~~ 203 (286)
T 1q7f_A 137 VECKVMRVIIFDQN-GNVLHKF------GCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEG-QY----LRQIGGE 203 (286)
T ss_dssp EETTTTEEEEECTT-SCEEEEE------ECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTC-CE----EEEESCT
T ss_pred EECCCCEEEEEcCC-CCEEEEe------CCCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCC-CE----EEEEccC
Confidence 77 68999999965 3322211 111344568999999998 8888888899999999743 32 2222211
Q ss_pred cCCCCccccccccccEEEEEEeecCCEEEEEeC-C-eEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEE
Q 010287 328 EAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M-TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 405 (513)
Q Consensus 328 ~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (513)
++...+..++++|+|+++++... + .|.+||.. ++.+..+..+.... ....+++
T Consensus 204 ----------g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~-------------~~~~i~~ 258 (286)
T 1q7f_A 204 ----------GITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHA-------------QCFDVAL 258 (286)
T ss_dssp ----------TTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCS-------------CEEEEEE
T ss_pred ----------CccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--CCEEEEEcccCCCC-------------cceeEEE
Confidence 11246789999999998888654 4 99999964 66666665443211 0237999
Q ss_pred eCCCCEEEEEeCCCcEEEEecCCC
Q 010287 406 SGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 406 s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
+|+|+++++ +.|+.|++|++...
T Consensus 259 ~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 259 MDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp ETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCCcEEEE-CCCCeEEEEEcccc
Confidence 999987777 57899999998643
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.74 E-value=3.1e-16 Score=147.89 Aligned_cols=230 Identities=8% Similarity=0.055 Sum_probs=136.8
Q ss_pred eEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEE--EEeCCCCeEEEEE-----------
Q 010287 235 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA--EFHPTHCNMLAYS----------- 300 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~l~~~----------- 300 (513)
+..++|+|+++.|+.+ .++.|++||+.+++... + ...+...+... .++|++ .+++..
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~-~-------~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~ 153 (388)
T 3pe7_A 83 TFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV-V-------YQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLT 153 (388)
T ss_dssp SSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE-E-------EECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCC
T ss_pred ccceEEcCCCCEEEEEeCCCeEEEEECCCCccee-e-------eechhhcccccceeECCCC-CeeccccccCccccccc
Confidence 3356799999999988 68899999999765432 1 12233334333 348888 666532
Q ss_pred -----------eCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEeC-------C
Q 010287 301 -----------SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-------M 361 (513)
Q Consensus 301 -----------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~-------~ 361 (513)
..+..|.+||+.+++. ..+ ..+...+..+.|+| ||+.|+.... .
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~l------------~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~ 216 (388)
T 3pe7_A 154 DWKKFHEFYFTKPCCRLMRVDLKTGES-----TVI------------LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDA 216 (388)
T ss_dssp SHHHHHHHGGGCCCEEEEEEETTTCCE-----EEE------------EEESSCEEEEEEETTEEEEEEEEECSCTTTSSC
T ss_pred ccchhhhhhccCCcceEEEEECCCCce-----EEe------------ecCCccccccEECCCCCCEEEEEEecCCCCCcc
Confidence 2346789999888753 111 12225688999999 9998887543 2
Q ss_pred eEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC-CC----cEEEEecCCCCccc-ee
Q 010287 362 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN----LFRVFGCSEGSAES-TT 435 (513)
Q Consensus 362 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg----~i~vwd~~~~~~~~-~~ 435 (513)
.|.++|+. +.....+..+.... .+..+.|+|||+.|+..+. ++ .|++||+.+++... ..
T Consensus 217 ~l~~~d~~--~~~~~~l~~~~~~~-------------~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 281 (388)
T 3pe7_A 217 RMWLINED--GTNMRKVKTHAEGE-------------SCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTS 281 (388)
T ss_dssp SEEEEETT--SCCCEESCCCCTTE-------------EEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEE
T ss_pred eEEEEeCC--CCceEEeeeCCCCc-------------ccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEc
Confidence 67777765 33333333222100 1336889999998765443 22 39999999875322 22
Q ss_pred ecCCCCc---eeEEEEcCCCCceeee---------cCCCeEEEec--CCCCCccccCCccccccC-----------CeeE
Q 010287 436 LEASKNP---MRRQVQTPSRPSRPLG---------SLSGVVRRVK--GADNSALDANGNAFDFSM-----------KLLH 490 (513)
Q Consensus 436 ~~~~~~~---v~~~~~~~~~~~l~~~---------~~d~~i~~~~--~~~~~~~~~~~~~~~~~~-----------~i~~ 490 (513)
+.++... .....|+|+|+.|+.. ..+..|.+.. +.... ....+.. .+.+
T Consensus 282 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------~l~~~~~~~~~~~~~~~~~~~~ 355 (388)
T 3pe7_A 282 MPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH------RVARHDTSWKVFEGDRQVTHPH 355 (388)
T ss_dssp ECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE------EEEECCCCCCCBTTBSSTTCCC
T ss_pred CCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE------EeccccCcccccccccccCCCC
Confidence 3221100 1224799999988854 3455676622 11111 1112233 5788
Q ss_pred EEEeCCCCEEEEEc--CCcEEEE
Q 010287 491 LAWHPSENSIACAA--SNSLYMY 511 (513)
Q Consensus 491 ~~~sp~~~~la~~~--~~~~~i~ 511 (513)
++|+|||+.|+.++ ++...||
T Consensus 356 ~~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 356 PSFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp CEECTTSSEEEEEECTTSSCEEE
T ss_pred ccCCCCCCEEEEEecCCCceeEE
Confidence 99999999998665 3444444
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.71 E-value=7.9e-16 Score=145.50 Aligned_cols=293 Identities=10% Similarity=0.065 Sum_probs=177.3
Q ss_pred ccccEEEEEEcCCCCEEEeecCC---CcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccc
Q 010287 34 EVDIISAIEFDKSGDHLATGDRG---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (513)
Q Consensus 34 h~~~V~~v~~sp~g~~latg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (513)
|...+.+++|||||++||..... ..|.+|++.+++. ..+..+..
T Consensus 34 ~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~------------------------~~l~~~~~--------- 80 (396)
T 3c5m_A 34 HRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA------------------------VQLTEGKG--------- 80 (396)
T ss_dssp ECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE------------------------EECCCSSC---------
T ss_pred cceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE------------------------EEeecCCC---------
Confidence 33447888999999998876543 3677888765542 11111210
Q ss_pred ccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccccc
Q 010287 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (513)
Q Consensus 111 ~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (513)
.....+.|+ ++++.|+.++.++.|++|++.+++...+..... .++++|+.+
T Consensus 81 --~~~~~~~~s--pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~---------------------~~~~~g~~l---- 131 (396)
T 3c5m_A 81 --DNTFGGFIS--TDERAFFYVKNELNLMKVDLETLEEQVIYTVDE---------------------EWKGYGTWV---- 131 (396)
T ss_dssp --BCTTTCEEC--TTSSEEEEEETTTEEEEEETTTCCEEEEEECCT---------------------TEEEEEEEE----
T ss_pred --CccccceEC--CCCCEEEEEEcCCcEEEEECCCCCcEEEEeccc---------------------ccCCCCCEE----
Confidence 223447895 488899999999999999999887655433221 134444433
Q ss_pred CCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE------cCCeEEEEEcCCCc
Q 010287 191 GCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA------DDLRINLWNLEISN 264 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~------~d~~i~vwd~~~~~ 264 (513)
+.........+| ...+.|+|+++.++.. .+..|++||+.+++
T Consensus 132 --------~~~~~~~~~~~~------------------------~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (396)
T 3c5m_A 132 --------ANSDCTKLVGIE------------------------ILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE 179 (396)
T ss_dssp --------ECTTSSEEEEEE------------------------EEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC
T ss_pred --------EeccCCcccccc------------------------ccccccCCCCcceeeeeeccCCCcceEEEEECCCCc
Confidence 111111111110 0124578888877653 35689999998654
Q ss_pred ceeeecccCccccccccCCeEEEEEeC-CCCeEEEEEeCC------CcEEEEEcCCcccccccceeeccccCCCCccccc
Q 010287 265 QSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSK------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT 337 (513)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (513)
.. .+..+...+..+.|+| ++ ..|+..+.+ ..|.+||+..+.. ..+....
T Consensus 180 ~~---------~~~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~~--------- 235 (396)
T 3c5m_A 180 LE---------VIHQDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSNV-----RKIKEHA--------- 235 (396)
T ss_dssp EE---------EEEEESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCCC-----EESSCCC---------
T ss_pred EE---------eeccCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCce-----eEeeccC---------
Confidence 32 1234566789999999 66 666665543 3588888765432 1111100
Q ss_pred cccccEEEEEEeecCCEEEEEe-C-----CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC-CCC
Q 010287 338 EIIASISDIKFARNGRHILSRD-Y-----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGG 410 (513)
Q Consensus 338 ~~~~~v~~i~~sp~~~~l~~~~-~-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~ 410 (513)
....+..+.|+|+|+.|+..+ + +.|++||+.+ ++... +..... . .+.|+| ||+
T Consensus 236 -~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~-l~~~~~----------------~-~~~~s~~dg~ 295 (396)
T 3c5m_A 236 -EGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET-LENEE-VMVMPP----------------C-SHLMSNFDGS 295 (396)
T ss_dssp -TTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT-CCEEE-EEECCS----------------E-EEEEECSSSS
T ss_pred -CCccccceEECCCCCEEEEEecCCCCccceEEEEECCC-CCeEE-eeeCCC----------------C-CCCccCCCCc
Confidence 013578899999999877642 2 3399999875 44322 211111 1 268999 999
Q ss_pred EEEEEe----------------CCCcEEEEecCCCCccceeecCCCC-----------ceeEEEEcCCCCceeeecC-CC
Q 010287 411 RVATGS----------------YSNLFRVFGCSEGSAESTTLEASKN-----------PMRRQVQTPSRPSRPLGSL-SG 462 (513)
Q Consensus 411 ~l~~~~----------------~dg~i~vwd~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~-d~ 462 (513)
++++++ .+..|++||+.++.. ..+..+.. .+....|+|+++.|+..+. ++
T Consensus 296 ~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~ 373 (396)
T 3c5m_A 296 LMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA--QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEG 373 (396)
T ss_dssp EEEEEECCC----------CCCCCCEEEEEETTTTBC--CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTS
T ss_pred eEEEecCCcceeeccccccccCCCCcEEEEecccCce--EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCC
Confidence 888754 347899999987643 23333333 2556789999998877654 44
Q ss_pred eEEE
Q 010287 463 VVRR 466 (513)
Q Consensus 463 ~i~~ 466 (513)
...+
T Consensus 374 ~~~l 377 (396)
T 3c5m_A 374 VPAI 377 (396)
T ss_dssp SCEE
T ss_pred CceE
Confidence 4444
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.70 E-value=1.6e-14 Score=133.91 Aligned_cols=230 Identities=10% Similarity=0.005 Sum_probs=139.5
Q ss_pred eEEEEeccCCCEEEEE--c-CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287 235 INSISNNSDGETFISA--D-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 311 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~--~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~ 311 (513)
...++++|+|++|+++ . +++|.+||+.+.+....++ . .. ....+.+.|++...+++.+.||.+.+|++
T Consensus 110 p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i-------~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~ 180 (361)
T 2oiz_A 110 DGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVT-------A-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINL 180 (361)
T ss_dssp GGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEG-------G-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEE
T ss_pred cceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEe-------c-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEE
Confidence 5568999999999987 3 6899999999765432201 1 11 12335677877678888999999999998
Q ss_pred CC-cccccccc---eeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCe--eeeeccccc
Q 010287 312 RQ-SALCDTHS---KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPV--ATFQVHEHL 384 (513)
Q Consensus 312 ~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~--~~~~~~~~~ 384 (513)
.. ++.... . ..++.. ..+ ..+.++|++..++..+. +.|.++|+.. .... ..+......
T Consensus 181 ~~~g~~~~~-~~~~~~~~~~------------~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~-~~~~~~~~~~~~~~~ 245 (361)
T 2oiz_A 181 GEDGKVASQ-SRSKQMFSVK------------DDP-IFIAPALDKDKAHFVSYYGNVYSADFSG-DEVKVDGPWSLLNDE 245 (361)
T ss_dssp CTTSSEEEE-EECCCCSCTT------------TSC-BCSCCEECSSEEEEEBTTSEEEEEECSS-SSCEEEEEEESCCHH
T ss_pred CCCCcEeee-ccccceEcCC------------CCc-eEEEecccCCEEEEEeCCCeEEEEEecC-CCceecccccccCcc
Confidence 65 332100 0 111111 111 12334677776666554 8999999874 2211 111110000
Q ss_pred ccccccccccCCccceeeEEEeCCCCEEEEEeC-----------CCcEEEEecCCCCccceeecCCCCceeEEEEcCCCC
Q 010287 385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-----------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 453 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 453 (513)
.. ..... ......++|+|+++.++++.. ++.|.+||+.++ +....+..+. ...++++|+++
T Consensus 246 ~~-~~~~~----p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-~~v~~i~~~~--p~~ia~spdg~ 317 (361)
T 2oiz_A 246 DK-AKNWV----PGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-QRVARIPGRD--ALSMTIDQQRN 317 (361)
T ss_dssp HH-HTTCE----ECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT-EEEEEEECTT--CCEEEEETTTT
T ss_pred cc-ccccc----cCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC-cEEEEEecCC--eeEEEECCCCC
Confidence 00 00000 000113789999888776543 358999999987 4556676666 88999999999
Q ss_pred ceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCC
Q 010287 454 SRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN 498 (513)
Q Consensus 454 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~ 498 (513)
+|++++. +.|.+++..... .+.......+......++++|+|+
T Consensus 318 ~l~v~n~-~~v~v~D~~t~~-l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 318 LMLTLDG-GNVNVYDISQPE-PKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEECS-SCEEEEECSSSS-CEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEEEeCC-CeEEEEECCCCc-ceeeEEeccCCCCcEEEEecCCCC
Confidence 9988886 889883222110 011122234567889999999986
No 170
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.68 E-value=3.3e-13 Score=131.54 Aligned_cols=324 Identities=11% Similarity=0.035 Sum_probs=202.9
Q ss_pred cCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeec
Q 010287 44 DKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS 123 (513)
Q Consensus 44 sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~ 123 (513)
+|.+.++++...+++|.++|..+++.+ ..+.. ...+..+.|+
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~-----------------------~~i~~-------------g~~p~~v~~S-- 205 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIK-----------------------TVLDT-------------GYAVHISRLS-- 205 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEE-----------------------EEEEC-------------SSCEEEEEEC--
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEE-----------------------EEEeC-------------CCCccceEEC--
Confidence 344567777788999999998776531 11211 1346788994
Q ss_pred CCCceEEEeecCCeEEEEEcc--CceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCC
Q 010287 124 ANSALYLLSTNDKTIKLWKVQ--EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPP 201 (513)
Q Consensus 124 ~~~~~l~s~s~d~~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 201 (513)
++++++++++.|+.|.+||+. +++......
T Consensus 206 pDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~------------------------------------------------ 237 (567)
T 1qks_A 206 ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK------------------------------------------------ 237 (567)
T ss_dssp TTSCEEEEEETTSEEEEEETTSSSCCEEEEEE------------------------------------------------
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe------------------------------------------------
Confidence 588899999999999999995 443322110
Q ss_pred CCCCceeceeeccCCcccccceeeEeeccccCCeEEEEec----cCCCEEEEE--cCCeEEEEEcCCCcceeeecccCcc
Q 010287 202 GGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNN----SDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA 275 (513)
Q Consensus 202 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~ 275 (513)
.+ .....++|+ |+|++++++ .+++|.++|..+.+.... +.....
T Consensus 238 ---------------------------~G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~-i~~~~~ 287 (567)
T 1qks_A 238 ---------------------------IG--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI-QSTRGM 287 (567)
T ss_dssp ---------------------------CC--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE-EECCEE
T ss_pred ---------------------------cC--CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEE-Eecccc
Confidence 01 125689999 699999987 489999999887654432 211110
Q ss_pred ccc---cccC-CeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec
Q 010287 276 NME---DLTE-VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 351 (513)
Q Consensus 276 ~~~---~~~~-~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~ 351 (513)
... .|.. .+..+..+++++.+++.....|.|.++|........ +..+.. ......+.|+|+
T Consensus 288 ~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~--v~~i~~-------------~~~~~d~~~~pd 352 (567)
T 1qks_A 288 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK--TTEISA-------------ERFLHDGGLDGS 352 (567)
T ss_dssp CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE--EEEEEC-------------CSSEEEEEECTT
T ss_pred ccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce--eeeeec-------------cccccCceECCC
Confidence 011 1222 678899999886778888888999999987643210 111111 134678899999
Q ss_pred CCEEEEEe-C-CeEEEEEccCCCCCeeeeec-ccccccccccccccCCccceeeEE-EeCCCC-EEEEEe-CCCcEEEEe
Q 010287 352 GRHILSRD-Y-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECC-LSGDGG-RVATGS-YSNLFRVFG 425 (513)
Q Consensus 352 ~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~-~l~~~~-~dg~i~vwd 425 (513)
+++++++. . +.|.++|+.+ ++.+..+.. ...+.. -.... ++|++. .++++. .++.|.++|
T Consensus 353 gr~~~va~~~sn~V~ViD~~t-~kl~~~i~vgg~~Php-------------g~g~~~~~p~~g~v~~t~~~g~~~Vsvid 418 (567)
T 1qks_A 353 HRYFITAANARNKLVVIDTKE-GKLVAIEDTGGQTPHP-------------GRGANFVHPTFGPVWATSHMGDDSVALIG 418 (567)
T ss_dssp SCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSSBCC-------------TTCEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCC-CcEEEEEeccCcCCCC-------------ccceeeECCCCCcEEEeCCCCCCeEEEec
Confidence 99988765 3 9999999996 666655543 211100 00223 578754 444543 468999999
Q ss_pred cCCCC------ccceeecCCCCceeEEEEcCCCCceeeecC-------CCeEEEecCCCC-----Cc-cccCC-----cc
Q 010287 426 CSEGS------AESTTLEASKNPMRRQVQTPSRPSRPLGSL-------SGVVRRVKGADN-----SA-LDANG-----NA 481 (513)
Q Consensus 426 ~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~~i~~~~~~~~-----~~-~~~~~-----~~ 481 (513)
..+.+ +...+++.....-..+..+|++++|..... ...|.+++.... .. .+... ..
T Consensus 419 ~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~ 498 (567)
T 1qks_A 419 TDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGI 498 (567)
T ss_dssp CCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTC
T ss_pred CCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccccc
Confidence 98732 233555544333345778999998877552 346776333222 10 00100 00
Q ss_pred ccccCCeeEEEEeCCCCEEEEE--c----CCcEEEEe
Q 010287 482 FDFSMKLLHLAWHPSENSIACA--A----SNSLYMYY 512 (513)
Q Consensus 482 ~~~~~~i~~~~~sp~~~~la~~--~----~~~~~i~~ 512 (513)
-+-...+.++.|+|+|+.+.++ + ++.+.|+.
T Consensus 499 ~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 499 TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 0124679999999999987755 2 57777765
No 171
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.68 E-value=8.5e-15 Score=136.54 Aligned_cols=251 Identities=11% Similarity=0.018 Sum_probs=151.5
Q ss_pred ccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeec-cCCcccccceeeEeeccccCCeEEEEeccCCCE--EEEE
Q 010287 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVT-SQETNLVAGCRRIYAHAHDYHINSISNNSDGET--FISA 250 (513)
Q Consensus 174 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~s~ 250 (513)
+..++++|+|+.+ ++.+.+ .+.+|++. ..+... ... ...+ +.+.+++|+|++++ ++++
T Consensus 42 ~~~~a~spdg~~l------------~~~~~~-~v~~~~~~~~g~~~~----~~~-~~~~-g~~~~~~~spdg~~l~~~~~ 102 (365)
T 1jof_A 42 ISWMTFDHERKNI------------YGAAMK-KWSSFAVKSPTEIVH----EAS-HPIG-GHPRANDADTNTRAIFLLAA 102 (365)
T ss_dssp CSEEEECTTSSEE------------EEEEBT-EEEEEEEEETTEEEE----EEE-EECC-SSGGGGCTTSCCEEEEEEEC
T ss_pred CcEEEECCCCCEE------------EEEccc-eEEEEEECCCCCEEE----eeE-eecC-CCCccEEECCCCCEEEEEEe
Confidence 3467899999976 444444 89999986 332210 000 0111 23556889999995 4343
Q ss_pred --------------cCCeEEEEEcCCCcceeeecccCcccc-ccccCCeEEEEEeCCCCeEEEEEe-CCCcEEEEEcC-C
Q 010287 251 --------------DDLRINLWNLEISNQSFNIVDVKPANM-EDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMR-Q 313 (513)
Q Consensus 251 --------------~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~vwd~~-~ 313 (513)
.++.+.+|++.........+. .+ ..+...+.+++|+|++ ++++++. .++.|.+||+. +
T Consensus 103 ~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~ 177 (365)
T 1jof_A 103 KQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQ----NYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLAS 177 (365)
T ss_dssp SSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEE----EEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTT
T ss_pred cCCcceeccceeecCCceEEEEccCCCCcCcceEe----eEEeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCC
Confidence 478999999974332222110 00 1245678999999999 6666655 47899999997 5
Q ss_pred cccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCC-CCCe---eeeecccccccc
Q 010287 314 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMD-SGPV---ATFQVHEHLRPK 387 (513)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~-~~~~---~~~~~~~~~~~~ 387 (513)
++... ...+... .|...+..++|+|+|+++++++. +.|.+|++... ++.. ..+........
T Consensus 178 g~~~~--~~~~~~~----------~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~- 244 (365)
T 1jof_A 178 GEVEL--VGSVDAP----------DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIP- 244 (365)
T ss_dssp SCEEE--EEEEECS----------STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCC-
T ss_pred CCEEE--eeeEecC----------CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcC-
Confidence 55311 1111110 11245889999999999887653 89999987631 3321 11111000000
Q ss_pred cccccccC---CccceeeEE-EeCCCCEEEEEeCC-C-----cEEEEecC-CCCccce---eecCCCCceeEEEEcC---
Q 010287 388 LCDLYEND---SIFDKFECC-LSGDGGRVATGSYS-N-----LFRVFGCS-EGSAEST---TLEASKNPMRRQVQTP--- 450 (513)
Q Consensus 388 ~~~~~~~~---~~~~v~~~~-~s~~~~~l~~~~~d-g-----~i~vwd~~-~~~~~~~---~~~~~~~~v~~~~~~~--- 450 (513)
.+.. ....+..++ |+|||++|++++.+ + .|.+|++. ++ .... ....+......++++|
T Consensus 245 ----g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g-~~~~~~~~~~~~~~~~~~~a~sp~~~ 319 (365)
T 1jof_A 245 ----DRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG-SIEKQLFLSPTPTSGGHSNAVSPCPW 319 (365)
T ss_dssp ----CBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS-CEEEEEEEEECSSCCTTCCCEEECTT
T ss_pred ----CcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCC-CEEEeeeeeecCCCCcccceecCCCc
Confidence 0000 000134799 99999998876543 2 89999996 44 3322 1333444566889999
Q ss_pred CCCceeeecCC-CeEEE
Q 010287 451 SRPSRPLGSLS-GVVRR 466 (513)
Q Consensus 451 ~~~~l~~~~~d-~~i~~ 466 (513)
++++|++++.+ +.|++
T Consensus 320 dg~~l~v~~~~~~~v~v 336 (365)
T 1jof_A 320 SDEWMAITDDQEGWLEI 336 (365)
T ss_dssp CTTEEEEECSSSCEEEE
T ss_pred CCCEEEEEEcCCCeEEE
Confidence 89999988764 88888
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.67 E-value=2.2e-14 Score=132.01 Aligned_cols=276 Identities=12% Similarity=0.102 Sum_probs=175.8
Q ss_pred ccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (513)
Q Consensus 36 ~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 115 (513)
..|.+++|++++..++..+.++.++.|.-. . ...+..+. ..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------------------------~~~~~~~~------------~~~ 47 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE--P------------------------WLEISKKG------------LQL 47 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE--E------------------------EEEEESSC------------CCE
T ss_pred cccceeeecCCccceeEEeecccCcccccc--e------------------------eEEEeccC------------ccc
Confidence 457888999998877777778888888321 1 12233343 457
Q ss_pred eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCC
Q 010287 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (513)
Q Consensus 116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 195 (513)
.+++|. +++.+++++..++.|.+||..+++.....
T Consensus 48 ~~~~~~--~~g~l~~~~~~~~~i~~~d~~~~~~~~~~------------------------------------------- 82 (333)
T 2dg1_A 48 EGLNFD--RQGQLFLLDVFEGNIFKINPETKEIKRPF------------------------------------------- 82 (333)
T ss_dssp EEEEEC--TTSCEEEEETTTCEEEEECTTTCCEEEEE-------------------------------------------
T ss_pred cCcEEC--CCCCEEEEECCCCEEEEEeCCCCcEEEEe-------------------------------------------
Confidence 889994 57777777888999999999877643321
Q ss_pred CCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cC----CeEEEEEcCCCcceeeec
Q 010287 196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD----LRINLWNLEISNQSFNIV 270 (513)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d----~~i~vwd~~~~~~~~~~~ 270 (513)
..+...+.+++++++++++++. .+ +.|.+||.+++... .+.
T Consensus 83 ---------------------------------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~-~~~ 128 (333)
T 2dg1_A 83 ---------------------------------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ-DII 128 (333)
T ss_dssp ---------------------------------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE-EEE
T ss_pred ---------------------------------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE-EEE
Confidence 1122458899999999988877 45 68999998865432 111
Q ss_pred ccCccccccccCCeEEEEEeCCCCeEEEEEeC------CCcEEEEEcCCcccccccceeeccccCCCCccccccccccEE
Q 010287 271 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSS------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 344 (513)
Q Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 344 (513)
........+.+++++|++ +++++... .+.|..+|..+++. ..+.. ....+.
T Consensus 129 -----~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~------------~~~~~~ 185 (333)
T 2dg1_A 129 -----EDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTV-----TPIIQ------------NISVAN 185 (333)
T ss_dssp -----CSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCE-----EEEEE------------EESSEE
T ss_pred -----ccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEE-----EEeec------------CCCccc
Confidence 001234578999999998 77766553 24555666544332 11111 113478
Q ss_pred EEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEE
Q 010287 345 DIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 422 (513)
Q Consensus 345 ~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 422 (513)
.++|+|+++.|+.++ . +.|.+||+...+..+..+...... .+. . ......++++++|+++++...++.|.
T Consensus 186 ~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~-----~~~--~-~~~~~~i~~d~~G~l~v~~~~~~~v~ 257 (333)
T 2dg1_A 186 GIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY-----YFT--G-HEGPDSCCIDSDDNLYVAMYGQGRVL 257 (333)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE-----ECC--S-SSEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE-----ecC--C-CCCCCceEECCCCCEEEEEcCCCEEE
Confidence 899999998766543 3 899999996434433322100000 000 0 00123789999999888877889999
Q ss_pred EEecCCCCccceeecCCCC------ceeEEEEcCCCCceeeecCC
Q 010287 423 VFGCSEGSAESTTLEASKN------PMRRQVQTPSRPSRPLGSLS 461 (513)
Q Consensus 423 vwd~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~~d 461 (513)
+||.. + .....+..+.. .+..++++|+++.|..++.+
T Consensus 258 ~~d~~-g-~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 258 VFNKR-G-YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EECTT-S-CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EECCC-C-CEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 99985 3 33334433322 57889999998777655544
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=5e-14 Score=129.22 Aligned_cols=260 Identities=10% Similarity=0.089 Sum_probs=165.4
Q ss_pred ccEEEEEEcCCCCEEEeecCC------------------------CcEEEEEeeCCCCCCCccCccccccccccCCCcce
Q 010287 36 DIISAIEFDKSGDHLATGDRG------------------------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (513)
Q Consensus 36 ~~V~~v~~sp~g~~latg~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (513)
..|.+|+++|+|+++++...+ ++|.+||..+++.
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~---------------------- 81 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI---------------------- 81 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE----------------------
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE----------------------
Confidence 679999999999999988877 3677777654442
Q ss_pred Eecccc-CCCCcccccccccccccceeEEEeecCCCceEEEeecCCeEEEEEccCce-eeeeeccccCCCcccCCCCccc
Q 010287 92 YKTEFQ-SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFG 169 (513)
Q Consensus 92 ~~~~~~-~h~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 169 (513)
...+. ++- .....+++. +++.++++...++.|++|+..... ..........+
T Consensus 82 -~~~~~~~~~------------~~p~gia~d--~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~----------- 135 (329)
T 3fvz_A 82 -LQSSGKNLF------------YLPHGLSID--TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP----------- 135 (329)
T ss_dssp -EEEECTTTC------------SSEEEEEEC--TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC-----------
T ss_pred -EeccCCCcc------------CCceEEEEC--CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC-----------
Confidence 11111 222 457889994 577788887888999999976542 11111000000
Q ss_pred CcccccCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEecc-CCCEEE
Q 010287 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFI 248 (513)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~ 248 (513)
| . ..++......++++| ++.+++
T Consensus 136 -------------g------------------~-------------------------~~~~~~~P~~ia~~~~~g~lyv 159 (329)
T 3fvz_A 136 -------------G------------------S-------------------------DQNHFCQPTDVAVEPSTGAVFV 159 (329)
T ss_dssp -------------C------------------C-------------------------STTCCSSEEEEEECTTTCCEEE
T ss_pred -------------C------------------C-------------------------CccccCCCcEEEEeCCCCeEEE
Confidence 0 0 012234578999999 788888
Q ss_pred EE--cCCeEEEEEcCCCcceeeecccCc--cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceee
Q 010287 249 SA--DDLRINLWNLEISNQSFNIVDVKP--ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 324 (513)
Q Consensus 249 s~--~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 324 (513)
+. .++.|++|+.. +.....+-.... ....++...+..++++|++..++++...++.|++||..+++. +..+
T Consensus 160 ~d~~~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~----~~~~ 234 (329)
T 3fvz_A 160 SDGYCNSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF----VREI 234 (329)
T ss_dssp EECSSCCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE----EEEE
T ss_pred EeCCCCCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE----EEEE
Confidence 76 38999999954 433222100000 000123345899999998338888888999999999986765 3333
Q ss_pred ccccCCCCccccccccccEEEEEEeecCCEEEE-------EeC-CeEEEEEccCCCCCeeeeecccccccccccccccCC
Q 010287 325 EEQEAPGTRSFFTEIIASISDIKFARNGRHILS-------RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDS 396 (513)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~-------~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (513)
... .+...+..++++| +..+++ ... ..|++||..+ ++.+..+......
T Consensus 235 ~~~----------~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-g~~~~~~~~~~~~------------ 290 (329)
T 3fvz_A 235 KHA----------SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-GEIIDVFKPVRKH------------ 290 (329)
T ss_dssp CCT----------TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT-CCEEEEECCSSSC------------
T ss_pred ecc----------ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-CeEEEEEcCCCCc------------
Confidence 221 1224678889998 333332 222 5899999886 7777665321110
Q ss_pred ccceeeEEEeCCCCEEEEEeCCCcEEEEecCC
Q 010287 397 IFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 428 (513)
Q Consensus 397 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 428 (513)
......++++|+|.++++...++.|++|++..
T Consensus 291 ~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 291 FDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred cCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 11134899999998888888899999999874
No 174
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.65 E-value=2e-13 Score=122.70 Aligned_cols=242 Identities=10% Similarity=0.116 Sum_probs=161.0
Q ss_pred cccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe-CCCCeEEEEEeC-CCcE
Q 010287 230 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSS-KGSI 306 (513)
Q Consensus 230 ~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~-dg~i 306 (513)
++-..+.+++++++++++++. .++.|.+||.. ++....+. . .....++...+..+++. +++ +++++... ++.|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~-~-~~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~~i 102 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFG-E-CGKRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQI 102 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEEC-C-BSSSTTCBSSEEEEEEETTTT-EEEEEECGGGCEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEec-c-cCCCcccccCceEEEEEcCCC-eEEEEcCCCCCEE
Confidence 444668899999999988887 68999999987 33322211 0 00112345678999995 666 77666643 8999
Q ss_pred EEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccc
Q 010287 307 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR 385 (513)
Q Consensus 307 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~ 385 (513)
.+|| .++.. ...+... +...+.+++++|+|+++++... +.|.+||.. ++.+..+......
T Consensus 103 ~~~d-~~g~~----~~~~~~~-----------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~- 163 (286)
T 1q7f_A 103 QIYN-QYGQF----VRKFGAT-----------ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGCSKHL- 163 (286)
T ss_dssp EEEC-TTSCE----EEEECTT-----------TCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECTTTC-
T ss_pred EEEC-CCCcE----EEEecCc-----------cCCCceEEEEeCCCCEEEEECCCCEEEEEcCC--CCEEEEeCCCCcc-
Confidence 9999 45543 2222211 1245789999999997777654 899999965 5555544321110
Q ss_pred cccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecC--CCCceeEEEEcCCCCceeeecCCC-
Q 010287 386 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSG- 462 (513)
Q Consensus 386 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~- 462 (513)
.....++++|+|+++++...++.|++||... .....+.. +......++++++++++++...++
T Consensus 164 ------------~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g--~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~ 229 (286)
T 1q7f_A 164 ------------EFPNGVVVNDKQEIFISDNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNF 229 (286)
T ss_dssp ------------SSEEEEEECSSSEEEEEEGGGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSC
T ss_pred ------------CCcEEEEECCCCCEEEEECCCCEEEEEcCCC--CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCE
Confidence 0134899999999888888889999999753 23334433 235678999999999888887775
Q ss_pred eEEEecCCCCCccccCCcccc--ccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287 463 VVRRVKGADNSALDANGNAFD--FSMKLLHLAWHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 463 ~i~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 512 (513)
.|.+...... ....... ....+..++++|+++++++..++.+.+|.
T Consensus 230 ~i~~~~~~g~----~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~ 277 (286)
T 1q7f_A 230 NLTIFTQDGQ----LISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYR 277 (286)
T ss_dssp EEEEECTTSC----EEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEE
T ss_pred EEEEECCCCC----EEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEE
Confidence 8888321110 0001111 12347899999999988887788899985
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.65 E-value=2.2e-14 Score=145.21 Aligned_cols=184 Identities=10% Similarity=0.080 Sum_probs=120.7
Q ss_pred ccCCCE-EEEEc--CCeEEEEEcC--CCcceeeecccCcccccc-----ccCCeEEEEEeCCCCeEEEEEeCC-------
Q 010287 241 NSDGET-FISAD--DLRINLWNLE--ISNQSFNIVDVKPANMED-----LTEVITSAEFHPTHCNMLAYSSSK------- 303 (513)
Q Consensus 241 ~~~~~~-l~s~~--d~~i~vwd~~--~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~l~~~~~d------- 303 (513)
|||++. |+.+. +..|.++++. ...... .+.. |...+..++|+||+ +.|++++.+
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~--------~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~ 157 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPR--------PLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPS 157 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCE--------ECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTT
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCE--------eccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCC
Confidence 499998 77763 5667677665 202222 2222 56678899999999 788888776
Q ss_pred ---CcEEEEEcCC------cccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C--------CeEEE
Q 010287 304 ---GSIRLIDMRQ------SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y--------MTLKL 365 (513)
Q Consensus 304 ---g~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~--------~~v~i 365 (513)
..|.+||+.+ +.. ..+.. .+...+..++|||||++|+..+ + ..|++
T Consensus 158 ~~~~~i~~~~~~~~~~~~~~~~-----~~l~~-----------~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~ 221 (662)
T 3azo_A 158 DVRRFLAAVPLDGSAAADRSAV-----RELSD-----------DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKT 221 (662)
T ss_dssp CEEEEEEEEETTSTTTTCGGGS-----EESSC-----------SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEE
T ss_pred CceeEEEEEECCCCccccCCce-----eEEEe-----------cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEE
Confidence 5899999877 432 11110 1224677889999999998654 3 37999
Q ss_pred EEccCCCC--Ceeeee-cccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC--cEEEEecCCCCccceeecCCC
Q 010287 366 WDINMDSG--PVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN--LFRVFGCSEGSAESTTLEASK 440 (513)
Q Consensus 366 wd~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~ 440 (513)
||+...+. ....+. .+... +..+.|+|||+++++++.++ .|++||+.++. .......+.
T Consensus 222 ~d~~~~g~~~~~~~l~~~~~~~---------------~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~ 285 (662)
T 3azo_A 222 ARVTEDGRFADTRTLLGGPEEA---------------IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA-ATQLCRREE 285 (662)
T ss_dssp EEECTTSCEEEEEEEEEETTBC---------------EEEEEECTTSCEEEEECTTSSCEEEEECTTTCC-EEESSCCSS
T ss_pred EEECCCCcccccEEeCCCCCce---------------EcceEECCCCeEEEEECCCCCeEEEEEECCCCc-eeecccccc
Confidence 99983141 222332 22222 34789999999888888888 56666765552 222222222
Q ss_pred Cc--------eeEEEEcCCCCceeeecCCCeEEE
Q 010287 441 NP--------MRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 441 ~~--------v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.. +..++++++++++++++. +.++|
T Consensus 286 ~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l 318 (662)
T 3azo_A 286 EFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVL 318 (662)
T ss_dssp BSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEE
T ss_pred cccCccccccCceEeEeCCCEEEEEEEc-CccEE
Confidence 21 457889999999999988 88888
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.65 E-value=1.4e-13 Score=126.27 Aligned_cols=235 Identities=9% Similarity=0.042 Sum_probs=147.0
Q ss_pred CCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc--Ccccccc
Q 010287 203 GVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV--KPANMED 279 (513)
Q Consensus 203 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~ 279 (513)
.++.|.+||...... ...+..++-.....++++++++++++. .++.|++|+..........+.. .+..-..
T Consensus 67 ~~~~i~~~d~~~g~~------~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~ 140 (329)
T 3fvz_A 67 EEDTILVIDPNNAEI------LQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQN 140 (329)
T ss_dssp CSCCEEEECTTTCCE------EEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTT
T ss_pred cCCcEEEEECCCCeE------EeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCcc
Confidence 345566666543332 111122344568899999999988777 6899999998643212221100 0000023
Q ss_pred ccCCeEEEEEeC-CCCeEEEEEe-CCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec-CCEEE
Q 010287 280 LTEVITSAEFHP-THCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHIL 356 (513)
Q Consensus 280 ~~~~i~~~~~~~-~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~l~ 356 (513)
+...+..++++| ++ .++++.+ .++.|++|| .++.. +..+....... ....++......++++|+ +.+++
T Consensus 141 ~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~-~~g~~----~~~~~~~g~~~--~~~~~~~~~p~gia~d~~~g~l~v 212 (329)
T 3fvz_A 141 HFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFS-PSGKF----VTQWGEESSGS--SPRPGQFSVPHSLALVPHLDQLCV 212 (329)
T ss_dssp CCSSEEEEEECTTTC-CEEEEECSSCCEEEEEC-TTSCE----EEEECEECCSS--SCCTTEESCEEEEEEETTTTEEEE
T ss_pred ccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEc-CCCCE----EEEeccCCCCC--CCCCcccCCCcEEEEECCCCEEEE
Confidence 445789999999 66 8888876 699999999 44543 22232111000 000112245889999998 55555
Q ss_pred EEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC------CCCEEEEEeCCCcEEEEecCCC
Q 010287 357 SRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG------DGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 357 ~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
+... +.|++||..+ ++.+..+....... .+..++|+| +++..++...+..|++|++.++
T Consensus 213 ~d~~~~~I~~~~~~~-G~~~~~~~~~~~~~-------------~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g 278 (329)
T 3fvz_A 213 ADRENGRIQCFKTDT-KEFVREIKHASFGR-------------NVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG 278 (329)
T ss_dssp EETTTTEEEEEETTT-CCEEEEECCTTTTT-------------CEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTC
T ss_pred EECCCCEEEEEECCC-CcEEEEEeccccCC-------------CcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC
Confidence 5544 8999999985 77777664332111 133778888 4443333444568999999887
Q ss_pred Cccceee---cCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 430 SAESTTL---EASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 430 ~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
+ ....+ ..+......++++|+|.++++...++.|++
T Consensus 279 ~-~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~ 317 (329)
T 3fvz_A 279 E-IIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWK 317 (329)
T ss_dssp C-EEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEE
T ss_pred e-EEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEE
Confidence 3 43444 356677889999999988888888888887
No 177
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.64 E-value=1.9e-13 Score=126.80 Aligned_cols=278 Identities=10% Similarity=0.045 Sum_probs=163.9
Q ss_pred EEEEcCCCCEEEeec----------CCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 40 AIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 40 ~v~~sp~g~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
.++|+|||++++++. .++.|.+||..+.+.+ ..+...... .
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~-----------------------~~i~~~~~~------~ 104 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE-----------------------KEISLPPKR------V 104 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE-----------------------EEEEECTTB------C
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEE-----------------------EEEEcCccc------c
Confidence 899999999998876 3567999997654431 111100000 0
Q ss_pred cccccceeEEEeecCCCceEEEeec--CCeEEEEEccCceeeee-eccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKV-FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~--d~~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 186 (513)
........+++ ++++++|+++.. +++|.+||+.+++.... ....
T Consensus 105 ~~g~~p~~i~~--spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~------------------------------- 151 (361)
T 2oiz_A 105 QGLNYDGLFRQ--TTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA------------------------------- 151 (361)
T ss_dssp CBCCCGGGEEE--CTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-------------------------------
T ss_pred ccCCCcceEEE--CCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-------------------------------
Confidence 00034678899 458889998864 68999999998865432 1110
Q ss_pred ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC-CEEEEE-cCCeEEEEEcCCCc
Q 010287 187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISN 264 (513)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~vwd~~~~~ 264 (513)
....+.+.|++ ..+++. .||.+.+|++....
T Consensus 152 -----------------------------------------------~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g 184 (361)
T 2oiz_A 152 -----------------------------------------------GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDG 184 (361)
T ss_dssp -----------------------------------------------TEEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred -----------------------------------------------CcceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence 01123345544 344443 67777777776433
Q ss_pred ceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccccc-ccccE
Q 010287 265 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE-IIASI 343 (513)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v 343 (513)
........ ...+.....++ .+.++|++ ..++..+.++.+.++|+....... ...+...... ....+ .....
T Consensus 185 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~--~~~~~~~~~~---~~~~~~~p~g~ 256 (361)
T 2oiz_A 185 KVASQSRS-KQMFSVKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEVKV--DGPWSLLNDE---DKAKNWVPGGY 256 (361)
T ss_dssp SEEEEEEC-CCCSCTTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSCEE--EEEEESCCHH---HHHTTCEECCS
T ss_pred cEeeeccc-cceEcCCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCcee--cccccccCcc---ccccccccCCe
Confidence 22211000 00111112221 23335666 566667789999999987543210 1111100000 00000 00112
Q ss_pred EEEEEeecCCEEEEE-e-----------CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCE
Q 010287 344 SDIKFARNGRHILSR-D-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 411 (513)
Q Consensus 344 ~~i~~sp~~~~l~~~-~-----------~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 411 (513)
..++|+|++..++++ . ...|.+||+.+ .+.+.++..+. . ..++|+|||++
T Consensus 257 ~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~-p----------------~~ia~spdg~~ 318 (361)
T 2oiz_A 257 NLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD-A----------------LSMTIDQQRNL 318 (361)
T ss_dssp SCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT-C----------------CEEEEETTTTE
T ss_pred eEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEecCC-e----------------eEEEECCCCCE
Confidence 236899998877764 2 14899999997 78888877665 2 28999999999
Q ss_pred EEEEeCCCcEEEEecCCCC-ccceeecCCCCceeEEEEcCCCC
Q 010287 412 VATGSYSNLFRVFGCSEGS-AESTTLEASKNPMRRQVQTPSRP 453 (513)
Q Consensus 412 l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 453 (513)
|++++. +.|.+||..++. +....+.........++++|+|+
T Consensus 319 l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 319 MLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 998887 999999999872 22245555666677899999975
No 178
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.61 E-value=2.3e-13 Score=122.85 Aligned_cols=241 Identities=8% Similarity=0.009 Sum_probs=160.1
Q ss_pred cccccEEEEEEcCCCC-EEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccc
Q 010287 33 QEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (513)
Q Consensus 33 ~h~~~V~~v~~sp~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (513)
.+.....+++|+|+|+ +++++..++.|..|+..++ . ..+..+.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~------------------------~~~~~~~----------- 68 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L------------------------SPEMHPS----------- 68 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E------------------------EEEESSC-----------
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e------------------------EEEECCC-----------
Confidence 3456788999999998 7888888999999997654 2 1222333
Q ss_pred cccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccC
Q 010287 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (513)
Q Consensus 112 ~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 191 (513)
..+.++++. +++.++++...++.|.+||..+++.........
T Consensus 69 -~~~~~l~~~--~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~----------------------------------- 110 (296)
T 3e5z_A 69 -HHQNGHCLN--KQGHLIACSHGLRRLERQREPGGEWESIADSFE----------------------------------- 110 (296)
T ss_dssp -SSEEEEEEC--TTCCEEEEETTTTEEEEECSTTCCEEEEECEET-----------------------------------
T ss_pred -CCcceeeEC--CCCcEEEEecCCCeEEEEcCCCCcEEEEeeccC-----------------------------------
Confidence 558899994 477777666667899999997776543211000
Q ss_pred CCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEE----Ec--------------CC
Q 010287 192 CASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS----AD--------------DL 253 (513)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s----~~--------------d~ 253 (513)
......+..++++|+|+++++ |. .+
T Consensus 111 -------------------------------------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~ 153 (296)
T 3e5z_A 111 -------------------------------------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGR 153 (296)
T ss_dssp -------------------------------------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSC
T ss_pred -------------------------------------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCc
Confidence 000123567889999998886 21 23
Q ss_pred eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC-Cccc-ccccceeeccccCCC
Q 010287 254 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR-QSAL-CDTHSKLFEEQEAPG 331 (513)
Q Consensus 254 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~-~~~~~~~~~~~~~~~ 331 (513)
.|..++.. .... .+..+......++|+|++ +.+++.+.++.|.+||+. ++.. .. ...+..
T Consensus 154 ~l~~~~~~--g~~~--------~~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~--~~~~~~----- 215 (296)
T 3e5z_A 154 WVFRLAPD--GTLS--------APIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQ--GVHFTV----- 215 (296)
T ss_dssp EEEEECTT--SCEE--------EEECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEE--EEEECC-----
T ss_pred EEEEECCC--CCEE--------EeecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCC--CeEeeC-----
Confidence 55555544 2221 123345567899999999 666777788999999986 3332 11 112211
Q ss_pred CccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEE-eCCCC
Q 010287 332 TRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL-SGDGG 410 (513)
Q Consensus 332 ~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~ 410 (513)
+...+..++++++|+++++. ++.|.+||.. ++.+..+..+.. . ++++| +|+++
T Consensus 216 -------~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~--g~~~~~~~~~~~-~---------------~~~~f~~~d~~ 269 (296)
T 3e5z_A 216 -------EPGKTDGLRVDAGGLIWASA-GDGVHVLTPD--GDELGRVLTPQT-T---------------SNLCFGGPEGR 269 (296)
T ss_dssp -------SSSCCCSEEEBTTSCEEEEE-TTEEEEECTT--SCEEEEEECSSC-C---------------CEEEEESTTSC
T ss_pred -------CCCCCCeEEECCCCCEEEEc-CCeEEEECCC--CCEEEEEECCCC-c---------------eeEEEECCCCC
Confidence 11346679999999977777 7899999986 666666655543 1 27889 58999
Q ss_pred EEEEEeCCCcEEEEecCCC
Q 010287 411 RVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 411 ~l~~~~~dg~i~vwd~~~~ 429 (513)
.|++++.++ +.-+++++.
T Consensus 270 ~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 270 TLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp EEEEEETTE-EEEEECSCC
T ss_pred EEEEEcCCe-EEEEEcccc
Confidence 998888764 444555544
No 179
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.61 E-value=6.9e-12 Score=113.28 Aligned_cols=277 Identities=7% Similarity=-0.006 Sum_probs=180.0
Q ss_pred ccccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (513)
Q Consensus 34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (513)
+...+.+++++++|.+.++...++.|.+|+.. ++.. . ..+..+. .
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~---------------------~-~~~~~~~------------~ 57 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT---------------------E-YPLPTPD------------A 57 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE---------------------E-EECSSTT------------C
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE---------------------E-ecCCccc------------C
Confidence 34689999999999988877768899999965 3210 0 0111122 4
Q ss_pred cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (513)
Q Consensus 114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (513)
.+.++++ ++++.++++...++.|..|+.. ++.... ..
T Consensus 58 ~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~-~~--------------------------------------- 94 (299)
T 2z2n_A 58 KVMCLTI--SSDGEVWFTENAANKIGRITKK-GIIKEY-TL--------------------------------------- 94 (299)
T ss_dssp CEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEE-EC---------------------------------------
T ss_pred ceeeEEE--CCCCCEEEeCCCCCeEEEECCC-CcEEEE-eC---------------------------------------
Confidence 5888888 4577677766668889999875 322111 00
Q ss_pred CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc
Q 010287 194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 272 (513)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~ 272 (513)
......+.++++.++++++++. .++.|..||. ++... ..
T Consensus 95 -----------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~--- 134 (299)
T 2z2n_A 95 -----------------------------------PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EY--- 134 (299)
T ss_dssp -----------------------------------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EE---
T ss_pred -----------------------------------CCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-Ee---
Confidence 0111347789999999888877 5889999998 33322 11
Q ss_pred CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC
Q 010287 273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 352 (513)
Q Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~ 352 (513)
........+..+++.+++ +++++...++.|..||. +++.. .+... .....+.++++++++
T Consensus 135 ---~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~~----------~~~~~~~~i~~~~~g 194 (299)
T 2z2n_A 135 ---ELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDIT-----EFKIP----------TPASGPVGITKGNDD 194 (299)
T ss_dssp ---ECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEE-----EEECS----------STTCCEEEEEECTTS
T ss_pred ---cCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEE-----EeeCC----------CCCCcceeEEECCCC
Confidence 112234568999999998 77777777889999998 55431 11111 111457889999999
Q ss_pred CEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc
Q 010287 353 RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 431 (513)
Q Consensus 353 ~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 431 (513)
.+.++... +.|.+||. . +... .+..... ...+..++++++|+++++...++.|..||.. +..
T Consensus 195 ~l~v~~~~~~~i~~~~~-~-g~~~-~~~~~~~-------------~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~ 257 (299)
T 2z2n_A 195 ALWFVEIIGNKIGRITT-S-GEIT-EFKIPTP-------------NARPHAITAGAGIDLWFTEWGANKIGRLTSN-NII 257 (299)
T ss_dssp SEEEEETTTTEEEEECT-T-CCEE-EEECSST-------------TCCEEEEEECSTTCEEEEETTTTEEEEEETT-TEE
T ss_pred CEEEEccCCceEEEECC-C-CcEE-EEECCCC-------------CCCceeEEECCCCCEEEeccCCceEEEECCC-Cce
Confidence 87776654 89999998 4 4422 2221110 0113489999999977766677899999983 422
Q ss_pred cceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 432 ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 432 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
....+..+...+..+++ +++.+.++...++.+++
T Consensus 258 ~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 258 EEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKL 291 (299)
T ss_dssp EEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred EEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEE
Confidence 22223344566888888 88887777665666665
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.60 E-value=4.8e-13 Score=120.81 Aligned_cols=236 Identities=9% Similarity=0.019 Sum_probs=152.5
Q ss_pred cccCCeEEEEeccCCC-EEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEE
Q 010287 230 AHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 307 (513)
Q Consensus 230 ~h~~~v~~~~~~~~~~-~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 307 (513)
.+.....+++|+|+++ +++++ .++.|..|+..++ . . .+..+...+.+++++|++ +++++...++.|.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~-~-------~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--L-S-------PEMHPSHHQNGHCLNKQG-HLIACSHGLRRLE 93 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--E-E-------EEESSCSSEEEEEECTTC-CEEEEETTTTEEE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--e-E-------EEECCCCCcceeeECCCC-cEEEEecCCCeEE
Confidence 4445578999999998 66666 6899999999865 2 2 223355678999999998 7777777779999
Q ss_pred EEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEE----Ee-----------C-CeEEEEEccCC
Q 010287 308 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS----RD-----------Y-MTLKLWDINMD 371 (513)
Q Consensus 308 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~----~~-----------~-~~v~iwd~~~~ 371 (513)
+||..+++.. ....... ......+..++++|+|+++++ |. + +.-.||.+...
T Consensus 94 ~~d~~~g~~~----~~~~~~~--------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (296)
T 3e5z_A 94 RQREPGGEWE----SIADSFE--------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD 161 (296)
T ss_dssp EECSTTCCEE----EEECEET--------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred EEcCCCCcEE----EEeeccC--------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC
Confidence 9998777631 1111100 001134678999999998887 32 0 11244444432
Q ss_pred CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC-CCCcc---ceeecCCCCceeEEE
Q 010287 372 SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS-EGSAE---STTLEASKNPMRRQV 447 (513)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~---~~~~~~~~~~v~~~~ 447 (513)
+ .+..+..+... ...++|+|+++.|++.+.++.|++|++. ++ .. ...+..+...+..++
T Consensus 162 g-~~~~~~~~~~~---------------~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g-~~~~~~~~~~~~~~~p~~i~ 224 (296)
T 3e5z_A 162 G-TLSAPIRDRVK---------------PNGLAFLPSGNLLVSDTGDNATHRYCLNARG-ETEYQGVHFTVEPGKTDGLR 224 (296)
T ss_dssp S-CEEEEECCCSS---------------EEEEEECTTSCEEEEETTTTEEEEEEECSSS-CEEEEEEEECCSSSCCCSEE
T ss_pred C-CEEEeecCCCC---------------CccEEECCCCCEEEEeCCCCeEEEEEECCCC-cCcCCCeEeeCCCCCCCeEE
Confidence 2 23333222111 2379999999998777788999999987 33 22 122233445567899
Q ss_pred EcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEE-eCCCCEEEEEcCCcEEEEe
Q 010287 448 QTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW-HPSENSIACAASNSLYMYY 512 (513)
Q Consensus 448 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-sp~~~~la~~~~~~~~i~~ 512 (513)
+.++|+++++. ++.|.+... .+ +.......+.. +++++| +|+++.|.+++.++++.+.
T Consensus 225 ~d~~G~l~v~~--~~~v~~~~~---~g-~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~ 283 (296)
T 3e5z_A 225 VDAGGLIWASA--GDGVHVLTP---DG-DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIE 283 (296)
T ss_dssp EBTTSCEEEEE--TTEEEEECT---TS-CEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEE
T ss_pred ECCCCCEEEEc--CCeEEEECC---CC-CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEE
Confidence 99999977766 666666221 11 11111112234 899999 5899999998888877664
No 181
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.60 E-value=3.2e-14 Score=134.44 Aligned_cols=218 Identities=12% Similarity=0.072 Sum_probs=127.8
Q ss_pred EEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEE-------------------EEEeCCCCeEE
Q 010287 238 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITS-------------------AEFHPTHCNML 297 (513)
Q Consensus 238 ~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~~~l 297 (513)
+.|+|+++.|+.+ .++.|++||+.+++.. .+. ..+...... +.|+|++ +.+
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~-~~~-------~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~ 156 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQ-VIY-------TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWE 156 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEE-EEE-------ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHH
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcE-EEE-------ecccccCCCCCEEEeccCCccccccccccccCCCC-cce
Confidence 6789999999877 6778999999865432 211 111111111 3456666 444
Q ss_pred EEE-----eCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEeC-------CeEE
Q 010287 298 AYS-----SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-------MTLK 364 (513)
Q Consensus 298 ~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~-------~~v~ 364 (513)
+.. ..+..|.+||+.+++.. ... .+...+..+.|+| ++..|+..++ ..|.
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~~~----~~~-------------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~ 219 (396)
T 3c5m_A 157 KFAEFYHTNPTCRLIKVDIETGELE----VIH-------------QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMW 219 (396)
T ss_dssp HHHHHHHTCCCEEEEEEETTTCCEE----EEE-------------EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCE
T ss_pred eeeeeccCCCcceEEEEECCCCcEE----eec-------------cCCcccccceECCCCCCEEEEEecCCCCCCCceEE
Confidence 433 35668899998876531 111 1225688999999 8887766432 2578
Q ss_pred EEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC-----CcEEEEecCCCCccceeecCC
Q 010287 365 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-----NLFRVFGCSEGSAESTTLEAS 439 (513)
Q Consensus 365 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~ 439 (513)
+||+.. +. ...+..+... ..+..+.|+|||++|+..+.+ +.|++||+.++.... .....
T Consensus 220 ~~d~~~-~~-~~~l~~~~~~-------------~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~ 283 (396)
T 3c5m_A 220 LVNEDG-SN-VRKIKEHAEG-------------ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEE-VMVMP 283 (396)
T ss_dssp EEETTS-CC-CEESSCCCTT-------------EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEE-EEECC
T ss_pred EEECCC-Cc-eeEeeccCCC-------------ccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEE-eeeCC
Confidence 888763 33 2222222100 013478999999988766543 449999998774322 11111
Q ss_pred CCceeEEEEcC-CCCceeeec----------------CCCeEEEecCCCCCccccCCccccccC-----------CeeEE
Q 010287 440 KNPMRRQVQTP-SRPSRPLGS----------------LSGVVRRVKGADNSALDANGNAFDFSM-----------KLLHL 491 (513)
Q Consensus 440 ~~~v~~~~~~~-~~~~l~~~~----------------~d~~i~~~~~~~~~~~~~~~~~~~~~~-----------~i~~~ 491 (513)
... ..|+| +++++++++ .+..|.+....... ......+.. .+..+
T Consensus 284 --~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~ 356 (396)
T 3c5m_A 284 --PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS----AQKLCKHSTSWDVLDGDRQITHPHP 356 (396)
T ss_dssp --SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB----CCEEEECCCCCCCBTTBSSTTCCCC
T ss_pred --CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc----eEEccCCCCccccccccccCCCCCc
Confidence 122 88999 999888754 23566662211100 011112222 25678
Q ss_pred EEeCCCCEEEEEc
Q 010287 492 AWHPSENSIACAA 504 (513)
Q Consensus 492 ~~sp~~~~la~~~ 504 (513)
+|+||++.|+.++
T Consensus 357 ~~s~dg~~l~~~s 369 (396)
T 3c5m_A 357 SFTPNDDGVLFTS 369 (396)
T ss_dssp EECTTSSEEEEEE
T ss_pred eEccCCCeEEEEe
Confidence 9999999988665
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.59 E-value=3.3e-12 Score=117.43 Aligned_cols=237 Identities=11% Similarity=0.040 Sum_probs=147.5
Q ss_pred ccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC----
Q 010287 229 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---- 303 (513)
Q Consensus 229 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---- 303 (513)
..+...+.+++|++++++++++ .++.|.+||..+++.. .+ ...+...+.+++++|++ +++++...+
T Consensus 41 ~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~-~~-------~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~ 111 (333)
T 2dg1_A 41 SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK-RP-------FVSHKANPAAIKIHKDG-RLFVCYLGDFKST 111 (333)
T ss_dssp ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EE-------EECSSSSEEEEEECTTS-CEEEEECTTSSSC
T ss_pred eccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE-EE-------eeCCCCCcceEEECCCC-cEEEEeCCCCCCC
Confidence 3455567899999999988777 6899999999865432 11 11345679999999998 777777666
Q ss_pred CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-------CeEEEEEccCCCCCee
Q 010287 304 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-------MTLKLWDINMDSGPVA 376 (513)
Q Consensus 304 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-------~~v~iwd~~~~~~~~~ 376 (513)
+.|.+||..++... ..+... .....+.+++++|+|+++++... +.|..+|.. +..+.
T Consensus 112 ~~i~~~d~~~~~~~----~~~~~~----------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~--~~~~~ 175 (333)
T 2dg1_A 112 GGIFAATENGDNLQ----DIIEDL----------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD--FRTVT 175 (333)
T ss_dssp CEEEEECTTSCSCE----EEECSS----------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT--SCCEE
T ss_pred ceEEEEeCCCCEEE----EEEccC----------ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC--CCEEE
Confidence 68999998776531 111110 01246899999999998887542 345555543 22333
Q ss_pred eeecccccccccccccccCCccceeeEEEeCCCCEEE-EEeCCCcEEEEecCCCCccce--------eecCCCCceeEEE
Q 010287 377 TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEGSAEST--------TLEASKNPMRRQV 447 (513)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~--------~~~~~~~~v~~~~ 447 (513)
.+...... ...++|+|++++|+ +.+.++.|++|++.+...... .+.++ ..+..++
T Consensus 176 ~~~~~~~~---------------~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~ 239 (333)
T 2dg1_A 176 PIIQNISV---------------ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCC 239 (333)
T ss_dssp EEEEEESS---------------EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEE
T ss_pred EeecCCCc---------------ccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceE
Confidence 33211111 23789999998665 445678999999964222211 11122 3567899
Q ss_pred EcCCCCceeeecCCCeEEEecCCCCCccccCCc--cccccCCeeEEEEeCCCCEEEEEcCC
Q 010287 448 QTPSRPSRPLGSLSGVVRRVKGADNSALDANGN--AFDFSMKLLHLAWHPSENSIACAASN 506 (513)
Q Consensus 448 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~sp~~~~la~~~~~ 506 (513)
+.++++++++...++.|.++.........+... ..++...+.+++|+||++.|.+++.+
T Consensus 240 ~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 240 IDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 999999888777777777732211000000000 00111268999999998877755543
No 183
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.58 E-value=2.1e-13 Score=138.36 Aligned_cols=251 Identities=10% Similarity=-0.007 Sum_probs=152.5
Q ss_pred cccccEEEEEEcCCCCEEE-----eecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccc
Q 010287 33 QEVDIISAIEFDKSGDHLA-----TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (513)
Q Consensus 33 ~h~~~V~~v~~sp~g~~la-----tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (513)
+|...+..++|||||++|| .|+.+..|++||+.+++.. . ..+.+.
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~-----------------------~--~~~~~~----- 167 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS-----------------------K--VDVIEG----- 167 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC-----------------------S--SCCBSC-----
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc-----------------------C--CcccCc-----
Confidence 4556799999999999999 5666678999999877641 0 011100
Q ss_pred cccccccceeEEEeecCCCceEEEeecCCe-------------EEEEEccCceeeeeeccccCCCcccCCCCcccCcccc
Q 010287 108 SLEIEEKINKIRWCQSANSALYLLSTNDKT-------------IKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (513)
Q Consensus 108 ~~~~~~~i~~i~~~~~~~~~~l~s~s~d~~-------------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (513)
.....++|+ +|++.|+.++.|.. |++|++.++.........
T Consensus 168 -----~~~~~~~ws--pDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~------------------- 221 (695)
T 2bkl_A 168 -----GKYATPKWT--PDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE------------------- 221 (695)
T ss_dssp -----CTTCCCEEC--TTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC-------------------
T ss_pred -----ccccceEEe--cCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe-------------------
Confidence 112678995 48889999888765 888887765421100000
Q ss_pred cCceeccCCCccccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCC
Q 010287 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 253 (513)
Q Consensus 175 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~ 253 (513)
...|...+.++.|+|||++|+.+ .++
T Consensus 222 -----------------------------------------------------~~~~~~~~~~~~~SpDG~~l~~~~~~~ 248 (695)
T 2bkl_A 222 -----------------------------------------------------RTGDPTTFLQSDLSRDGKYLFVYILRG 248 (695)
T ss_dssp -----------------------------------------------------CCCCTTCEEEEEECTTSCCEEEEEEET
T ss_pred -----------------------------------------------------cCCCCEEEEEEEECCCCCEEEEEEeCC
Confidence 12334457889999999998876 444
Q ss_pred ----eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe---CCCcEEEEEcCCcccccccceeecc
Q 010287 254 ----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGSIRLIDMRQSALCDTHSKLFEE 326 (513)
Q Consensus 254 ----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~ 326 (513)
.|++|+..++. .. .+..+...+....+ +++ .+++.+. .++.|.+||+.++.... ...+-.
T Consensus 249 ~~~~~l~~~~~~~~~-~~--------~l~~~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~~--~~~l~~ 315 (695)
T 2bkl_A 249 WSENDVYWKRPGEKD-FR--------LLVKGVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARAS--WKEIVP 315 (695)
T ss_dssp TTEEEEEEECTTCSS-CE--------EEEECSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGGG--CEEEEC
T ss_pred CCceEEEEEcCCCCc-eE--------EeecCCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCccC--CeEEec
Confidence 56666554332 21 23344455566666 677 5444444 25789999987754210 111111
Q ss_pred ccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEE
Q 010287 327 QEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 405 (513)
Q Consensus 327 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (513)
+. ....+..++|+ ++.++++.. ++..++|.+...+.....+..+... .+..+.+
T Consensus 316 ~~----------~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~--------------~v~~~~~ 370 (695)
T 2bkl_A 316 ED----------SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVG--------------AASNLMG 370 (695)
T ss_dssp CC----------SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSS--------------EECCCBS
T ss_pred CC----------CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCe--------------EEEEeec
Confidence 10 02357788888 666667655 4777777665335544444433111 0236778
Q ss_pred eCCCCEEEEE----eCCCcEEEEecCCCC
Q 010287 406 SGDGGRVATG----SYSNLFRVFGCSEGS 430 (513)
Q Consensus 406 s~~~~~l~~~----~~dg~i~vwd~~~~~ 430 (513)
+|+++.++.. ...+.|++||+.++.
T Consensus 371 s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 371 LEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp CTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 8999877622 235789999998764
No 184
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.58 E-value=2.7e-11 Score=109.31 Aligned_cols=233 Identities=8% Similarity=-0.027 Sum_probs=153.9
Q ss_pred CCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287 233 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 311 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~ 311 (513)
..+.++++++++.++++. .++.|..|+.. +. . ..+ .+......+..+++.+++ .++++...++.|.+||.
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~-~~~-----~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~ 127 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKK-GI-I-KEY-----TLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD 127 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-E-EEE-----ECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc-E-EEE-----eCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC
Confidence 347889999999988887 58899999976 22 2 111 112234568999999998 78877777889999997
Q ss_pred CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccccccc
Q 010287 312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 390 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 390 (513)
++.. ..+... .....+..++++++|.++++... +.|..||. . ++... +......
T Consensus 128 -~g~~-----~~~~~~----------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~-g~~~~-~~~~~~~------ 182 (299)
T 2z2n_A 128 -DGKI-----REYELP----------NKGSYPSFITLGSDNALWFTENQNNAIGRITE-S-GDITE-FKIPTPA------ 182 (299)
T ss_dssp -TCCE-----EEEECS----------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-T-CCEEE-EECSSTT------
T ss_pred -CCCE-----EEecCC----------CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C-CcEEE-eeCCCCC------
Confidence 5442 111111 11245889999999988877654 89999997 3 44332 2111100
Q ss_pred ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCC
Q 010287 391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA 470 (513)
Q Consensus 391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~ 470 (513)
..+..++++++|+++++...++.|.+|+. ++......+..+...+..+++.++++++++...++.|......
T Consensus 183 -------~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 183 -------SGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp -------CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred -------CcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 11347899999997777767889999998 5533222233445678899999999977776566666663221
Q ss_pred -CCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287 471 -DNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 471 -~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 512 (513)
.... . ........+.++++ ++++++++...+++..|.
T Consensus 255 g~~~~--~--~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~ 292 (299)
T 2z2n_A 255 NIIEE--Y--PIQIKSAEPHGICF-DGETIWFAMECDKIGKLT 292 (299)
T ss_dssp TEEEE--E--ECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEE
T ss_pred CceEE--E--eCCCCCCccceEEe-cCCCEEEEecCCcEEEEE
Confidence 1110 0 01123467899999 999988877778887764
No 185
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.57 E-value=1.3e-12 Score=120.93 Aligned_cols=172 Identities=10% Similarity=0.028 Sum_probs=104.8
Q ss_pred eEEEEeccCCCEEEEE-c---------------------------CCeEEEEEcCCCcceeeecccCccccccccCCeEE
Q 010287 235 INSISNNSDGETFISA-D---------------------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITS 286 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~-~---------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 286 (513)
+..++|+|+++.|+.+ . ...|++||+.+++.... +.. . .+..
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~--------l~~-~-~~~~ 175 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEE--------FEK-P-RFSS 175 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEE--------EEE-E-TTCE
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEee--------ecC-C-Cccc
Confidence 5667777777766655 2 25789999986543122 122 2 6788
Q ss_pred EEEeCCCCeEEEEEeCCC-------cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe
Q 010287 287 AEFHPTHCNMLAYSSSKG-------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 359 (513)
Q Consensus 287 ~~~~~~~~~~l~~~~~dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~ 359 (513)
+.|+|++ +++++..++ ...+|.+.+++. ..+ ..+ ..+..+ +|+|+.|+.++
T Consensus 176 ~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~-----~~l------------~~~-~~~~~~--spdg~~l~~~~ 233 (347)
T 2gop_A 176 GIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKE-----EKM------------FEK-VSFYAV--DSDGERILLYG 233 (347)
T ss_dssp EEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEE-----EEE------------EEE-ESEEEE--EECSSCEEEEE
T ss_pred ccCCCCe--EEEEEecccccccccccccEEEeCCCce-----EEe------------ccC-cceeeE--CCCCCEEEEEE
Confidence 9999997 556565542 445555443321 111 111 234444 99999887654
Q ss_pred -C--------CeEEEEEccCCCCCeeeeecccccccccccccccCCccceee-EEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 360 -Y--------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE-CCLSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 360 -~--------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
+ ..|.+|| . ++.......+... +.. +.|+ |+ ++++++.++.++|| +.++
T Consensus 234 ~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~---------------~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g 292 (347)
T 2gop_A 234 KPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRG---------------VGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG 292 (347)
T ss_dssp CCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSE---------------EEEEEEET-TE-EEEEEEETTEEEEE-EESS
T ss_pred ccccCCccccceEEEEC--C-CceEeccccCCcc---------------cCCccEEc-Cc-EEEEEecCCcEEEE-EcCC
Confidence 2 3677777 2 4433333222222 334 7899 88 88899999999999 8744
Q ss_pred CccceeecCCCCceeEEEEcCCCCceeeecCCCe
Q 010287 430 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 463 (513)
Q Consensus 430 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 463 (513)
.. ..+..+...+..+.++| .++++++.++.
T Consensus 293 -~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~ 322 (347)
T 2gop_A 293 -EI-KPIAKGRHWIMGFDVDE--IVVYLKETATR 322 (347)
T ss_dssp -SE-EEEECSSSEEEEEEESS--SEEEEEECSSS
T ss_pred -ce-EEEecCCCeEEeeeeeC--cEEEEEcCCCC
Confidence 33 33334467888999999 56666655544
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.57 E-value=7.2e-13 Score=134.88 Aligned_cols=163 Identities=10% Similarity=0.060 Sum_probs=100.8
Q ss_pred ccCCeEEEEeccCCCEEEEE-c-----CCeEEEEEcCC------CcceeeecccCccccccccCCeEEEEEeCCCCeEEE
Q 010287 231 HDYHINSISNNSDGETFISA-D-----DLRINLWNLEI------SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA 298 (513)
Q Consensus 231 h~~~v~~~~~~~~~~~l~s~-~-----d~~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 298 (513)
|...+..+.|+|||++|+.+ . +..|++||+.+ +..... .+..+...+.. .|+|++ ..|+
T Consensus 231 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-------~l~~~~~~~~~-~~s~dg-~~l~ 301 (710)
T 2xdw_A 231 EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV-------KLIDNFEGEYD-YVTNEG-TVFT 301 (710)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE-------EEECSSSSCEE-EEEEET-TEEE
T ss_pred CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE-------EeeCCCCcEEE-EEeccC-CEEE
Confidence 34457789999999998875 3 56899999986 321121 23344444444 488888 5554
Q ss_pred EEeC-C---CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CC--eEEEEEccCC
Q 010287 299 YSSS-K---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YM--TLKLWDINMD 371 (513)
Q Consensus 299 ~~~~-d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~--~v~iwd~~~~ 371 (513)
..+. + +.|.+||+.++... ....+..+.. ...+..+.|++++.++++.. ++ .|.+|++..
T Consensus 302 ~~s~~~~~~~~l~~~d~~~~~~~--~~~~l~~~~~----------~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~- 368 (710)
T 2xdw_A 302 FKTNRHSPNYRLINIDFTDPEES--KWKVLVPEHE----------KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT- 368 (710)
T ss_dssp EEECTTCTTCEEEEEETTSCCGG--GCEEEECCCS----------SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT-
T ss_pred EEECCCCCCCEEEEEeCCCCCcc--cceeccCCCC----------CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC-
Confidence 4444 3 36999998775320 0112211110 02577889987777777765 44 566677654
Q ss_pred CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEE-e---CCCcEEEEecCCCC
Q 010287 372 SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-S---YSNLFRVFGCSEGS 430 (513)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~---~dg~i~vwd~~~~~ 430 (513)
++.+..+..+... +..+.++|+++.++.. + ..+.|++||+.++.
T Consensus 369 g~~~~~l~~~~~~---------------v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 369 GALLKIFPLEVGS---------------VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CCEEEEECCCSSE---------------EEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCEEEecCCCCce---------------EEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 6656666555332 3477889998766532 2 35789999998774
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.56 E-value=2e-12 Score=131.62 Aligned_cols=239 Identities=8% Similarity=-0.048 Sum_probs=154.2
Q ss_pred ccCCeEEEEeccCCCEEEEE-c-CC----eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC
Q 010287 231 HDYHINSISNNSDGETFISA-D-DL----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 304 (513)
Q Consensus 231 h~~~v~~~~~~~~~~~l~s~-~-d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 304 (513)
|...+..++|||||++|+.+ + +| .|++||+.+++.... .+. ...+..++|+||+ +.|+.++.++
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-------~~~--~~~~~~~~wspDg-~~l~~~~~~~ 192 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-------VLE--RVKFSCMAWTHDG-KGMFYNAYPQ 192 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-------EEE--EECSCCEEECTTS-SEEEEEECCC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-------ccc--CcccceEEEEeCC-CEEEEEEECC
Confidence 33457889999999999976 3 33 899999987654321 111 2225679999999 7888887776
Q ss_pred c----------------EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe------CCe
Q 010287 305 S----------------IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD------YMT 362 (513)
Q Consensus 305 ~----------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~------~~~ 362 (513)
. |++|++.++..... ..+... .+...+..+.|+|||++|+... ...
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--~v~~~~----------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDI--LCAEFP----------DEPKWMGGAELSDDGRYVLLSIREGCDPVNR 260 (710)
T ss_dssp CSSCCSSSCCCCCCCCEEEEEETTSCGGGCE--EEECCT----------TCTTCEEEEEECTTSCEEEEEEECSSSSCCE
T ss_pred ccccccccccccCCCCEEEEEECCCCcccce--EEeccC----------CCCeEEEEEEEcCCCCEEEEEEEccCCCccE
Confidence 5 99999987653211 122221 1224578899999999988643 358
Q ss_pred EEEEEccC------CCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC----CcEEEEecCCCCc-
Q 010287 363 LKLWDINM------DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEGSA- 431 (513)
Q Consensus 363 v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vwd~~~~~~- 431 (513)
|++||+.. .......+..+.... ...|+|+|+.|+..+.. +.|.+||+.++..
T Consensus 261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~ 324 (710)
T 2xdw_A 261 LWYCDLQQESNGITGILKWVKLIDNFEGE----------------YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES 324 (710)
T ss_dssp EEEEEGGGSSSSSCSSCCCEEEECSSSSC----------------EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG
T ss_pred EEEEECcccccccCCccceEEeeCCCCcE----------------EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc
Confidence 99999874 222344454443321 23588999988766543 3699999987642
Q ss_pred cceeecCCCC--ceeEEEEcCCCCceeeecCCCeEEE--ec--CCCCCccccCCccccccCCeeEEEEeCCCCEEEEE--
Q 010287 432 ESTTLEASKN--PMRRQVQTPSRPSRPLGSLSGVVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACA-- 503 (513)
Q Consensus 432 ~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~--~~--~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~-- 503 (513)
....+..+.. .+..+.+++++.++++...|+..+| .. .+... .....+...|..++++|+++.|+..
T Consensus 325 ~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~-----~~l~~~~~~v~~~~~s~d~~~l~~~~s 399 (710)
T 2xdw_A 325 KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL-----KIFPLEVGSVVGYSGQKKDTEIFYQFT 399 (710)
T ss_dssp GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE-----EEECCCSSEEEEEECCTTCSEEEEEEE
T ss_pred cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEE-----EecCCCCceEEEEecCCCCCEEEEEEe
Confidence 1234444433 6778888888888888888987766 22 11111 0111235678899999999877743
Q ss_pred c---CCcEEEEe
Q 010287 504 A---SNSLYMYY 512 (513)
Q Consensus 504 ~---~~~~~i~~ 512 (513)
+ ...+++|.
T Consensus 400 s~~~P~~i~~~d 411 (710)
T 2xdw_A 400 SFLSPGIIYHCD 411 (710)
T ss_dssp CSSCCCEEEEEE
T ss_pred CCCCCCEEEEEE
Confidence 2 24566664
No 188
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.56 E-value=1e-12 Score=121.71 Aligned_cols=215 Identities=11% Similarity=0.051 Sum_probs=133.9
Q ss_pred eEEEEeccCCCEEEEE-c-C--Ce--EEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC-----
Q 010287 235 INSISNNSDGETFISA-D-D--LR--INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----- 303 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~-~-d--~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----- 303 (513)
+..++|+|||+.|+.. . + +. |.+|++.+++. .. +..+.. +..+.|+|++ +.|+.++.+
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~-~~--------l~~~~~-~~~~~wspdg-~~l~~~~~~~~~~~ 129 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS-KK--------ILEAKN-IRSLEWNEDS-RKLLIVGFKRREDE 129 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE-EE--------EEEESE-EEEEEECTTS-SEEEEEEECCCC--
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce-EE--------EEcCCC-ccceeECCCC-CEEEEEEccCCCcC
Confidence 6788999999998876 3 2 44 77778775432 22 122233 8999999999 767666532
Q ss_pred ----------------------CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-
Q 010287 304 ----------------------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY- 360 (513)
Q Consensus 304 ----------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~- 360 (513)
..|.+||+.+++.. ..+.. . .+..+.|+||| +++++..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~----~~l~~-------------~-~~~~~~~spdg-~~~~~~~~ 190 (347)
T 2gop_A 130 DFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI----EEFEK-------------P-RFSSGIWHRDK-IVVNVPHR 190 (347)
T ss_dssp -------CCCC---------CEEEEEEEETTTTEEE----EEEEE-------------E-TTCEEEEETTE-EEEEEECC
T ss_pred CcEEEcccceeecCcccccCccceEEEEECCCCeEE----eeecC-------------C-CcccccCCCCe-EEEEEecc
Confidence 56888898776531 11111 1 36788999999 7776643
Q ss_pred C-------eEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC--------CcEEEEe
Q 010287 361 M-------TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS--------NLFRVFG 425 (513)
Q Consensus 361 ~-------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~vwd 425 (513)
. ...||.+.. ++. ..+..+ .. ...++|||++|+.++.+ ..|++||
T Consensus 191 ~~~~~~~~~~~l~~~d~-~~~-~~l~~~-~~-----------------~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 191 EIIPQYFKFWDIYIWED-GKE-EKMFEK-VS-----------------FYAVDSDGERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp CSSCCSSCCEEEEEEET-TEE-EEEEEE-ES-----------------EEEEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred cccccccccccEEEeCC-Cce-EEeccC-cc-----------------eeeECCCCCEEEEEEccccCCccccceEEEEC
Confidence 1 445665552 432 333322 11 22349999998877644 3688888
Q ss_pred cCCCCccceeecCCCCceeE-EEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc
Q 010287 426 CSEGSAESTTLEASKNPMRR-QVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 504 (513)
Q Consensus 426 ~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 504 (513)
++ ........+...+.. +.|+ ++ ++++++.++.++|. .. .+ .......+...|.+++|+| .++++++
T Consensus 251 --~~-~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~--~g--~~~~~~~~~~~v~~~~~s~--~~~~~~~ 318 (347)
T 2gop_A 251 --GK-EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW--DG--EIKPIAKGRHWIMGFDVDE--IVVYLKE 318 (347)
T ss_dssp --SS-CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE--SS--SEEEEECSSSEEEEEEESS--SEEEEEE
T ss_pred --CC-ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec--CC--ceEEEecCCCeEEeeeeeC--cEEEEEc
Confidence 33 333444556677876 8999 88 88888999988883 11 11 1112233467899999999 5555544
Q ss_pred -CCcE-EEE
Q 010287 505 -SNSL-YMY 511 (513)
Q Consensus 505 -~~~~-~i~ 511 (513)
.+.. .||
T Consensus 319 ~~~~~~~l~ 327 (347)
T 2gop_A 319 TATRLRELF 327 (347)
T ss_dssp CSSSCCEEE
T ss_pred CCCChHHhe
Confidence 4432 444
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.54 E-value=5.9e-12 Score=111.92 Aligned_cols=238 Identities=8% Similarity=0.024 Sum_probs=153.9
Q ss_pred cEEEEEEcCCCCEEE-eecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287 37 IISAIEFDKSGDHLA-TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (513)
Q Consensus 37 ~V~~v~~sp~g~~la-tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 115 (513)
...+++++++|++++ +...++.|.+|+..+.... .....+. ..+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-----------------------~~~~~~~------------~~p 69 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-----------------------VLPFNGL------------YQP 69 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E-----------------------ECCCCSC------------CSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc-----------------------eEeeCCc------------CCc
Confidence 778999999999777 5577889999986543320 0001111 347
Q ss_pred eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCC
Q 010287 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (513)
Q Consensus 116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 195 (513)
.++++. +++.++++.. ++.|.+||......... .
T Consensus 70 ~~i~~~--~~g~l~v~~~-~~~i~~~d~~~~~~~~~-~------------------------------------------ 103 (270)
T 1rwi_B 70 QGLAVD--GAGTVYVTDF-NNRVVTLAAGSNNQTVL-P------------------------------------------ 103 (270)
T ss_dssp CCEEEC--TTCCEEEEET-TTEEEEECTTCSCCEEC-C------------------------------------------
T ss_pred ceeEEC--CCCCEEEEcC-CCEEEEEeCCCceEeee-e------------------------------------------
Confidence 888994 4666555544 88999999765432211 0
Q ss_pred CCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCc
Q 010287 196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 274 (513)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~ 274 (513)
......+.+++++++++++++. .++.|.+|+..+......
T Consensus 104 ---------------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~------ 144 (270)
T 1rwi_B 104 ---------------------------------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL------ 144 (270)
T ss_dssp ---------------------------------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC------
T ss_pred ---------------------------------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee------
Confidence 0111347789999999877776 688999997654322211
Q ss_pred cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCE
Q 010287 275 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 354 (513)
Q Consensus 275 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~ 354 (513)
.......+.++++++++ +++++...++.|.+||........ .. ..+...+.+++++++|.+
T Consensus 145 --~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~-----~~-----------~~~~~~p~~i~~d~~g~l 205 (270)
T 1rwi_B 145 --PFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVV-----LP-----------FTDITAPWGIAVDEAGTV 205 (270)
T ss_dssp --CCCSCCSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCCEEE-----CC-----------CSSCCSEEEEEECTTCCE
T ss_pred --ccccCCCceeEEEeCCC-CEEEEECCCCEEEEEecCCCceEe-----ec-----------ccCCCCceEEEECCCCCE
Confidence 11223457889999998 777777778999999987644211 00 001145789999999977
Q ss_pred EEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 355 ILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 355 l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
+++... +.|.+|+... .. ........ ......++++++|+++++...++.|+++++...
T Consensus 206 ~v~~~~~~~v~~~~~~~-~~-~~~~~~~~--------------~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 206 YVTEHNTNQVVKLLAGS-TT-STVLPFTG--------------LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEETTTSCEEEECTTC-SC-CEECCCCS--------------CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred EEEECCCCcEEEEcCCC-Cc-ceeeccCC--------------CCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 666554 8999999863 22 22211110 011348999999998888889999999998754
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.53 E-value=1.4e-12 Score=132.43 Aligned_cols=238 Identities=8% Similarity=-0.027 Sum_probs=147.2
Q ss_pred cccCCeEEEEeccCCCEEEEE------cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC
Q 010287 230 AHDYHINSISNNSDGETFISA------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK 303 (513)
Q Consensus 230 ~h~~~v~~~~~~~~~~~l~s~------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 303 (513)
+|...+.+++|||||++|+.+ ++..|++||+.+++.... ..+... ....++|+||+ +.|+.++.|
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~------~~~~~~--~~~~~~wspDg-~~l~~~~~d 188 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV------DVIEGG--KYATPKWTPDS-KGFYYEWLP 188 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS------CCBSCC--TTCCCEECTTS-SEEEEEECC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC------cccCcc--cccceEEecCC-CEEEEEEec
Confidence 444558899999999999854 246899999997764301 011111 12578999999 888888887
Q ss_pred Cc-------------EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CC----eEEE
Q 010287 304 GS-------------IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YM----TLKL 365 (513)
Q Consensus 304 g~-------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~----~v~i 365 (513)
.. |++|++.++..... ..+... .+...+..+.|||||++|+... ++ .|++
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--lv~~~~----------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~ 256 (695)
T 2bkl_A 189 TDPSIKVDERPGYTTIRYHTLGTEPSKDT--VVHERT----------GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYW 256 (695)
T ss_dssp CCTTSCGGGGGGGCEEEEEETTSCGGGCE--EEECCC----------CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEE
T ss_pred CCCCCccccCCCCCEEEEEECCCCchhce--EEEecC----------CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEE
Confidence 76 99999987653221 122211 1224688999999999988754 24 5666
Q ss_pred EEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe---CCCcEEEEecCCCCc--cceeecCC-
Q 010287 366 WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS---YSNLFRVFGCSEGSA--ESTTLEAS- 439 (513)
Q Consensus 366 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~vwd~~~~~~--~~~~~~~~- 439 (513)
|+.. ......+..+... +....+ ++|++++... .++.|.+||+.++.. ....+..+
T Consensus 257 ~~~~--~~~~~~l~~~~~~---------------~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 318 (695)
T 2bkl_A 257 KRPG--EKDFRLLVKGVGA---------------KYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS 318 (695)
T ss_dssp ECTT--CSSCEEEEECSSC---------------CEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS
T ss_pred EcCC--CCceEEeecCCCc---------------eEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC
Confidence 6543 2234444443322 114445 5666444443 257899999987642 12233333
Q ss_pred CCceeEEEEcCCCCceeeecCCCeEEE--ec--CCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-----CCcEEE
Q 010287 440 KNPMRRQVQTPSRPSRPLGSLSGVVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-----SNSLYM 510 (513)
Q Consensus 440 ~~~v~~~~~~~~~~~l~~~~~d~~i~~--~~--~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-----~~~~~i 510 (513)
...+..+.++ ++.++++...|+..++ .. +.... .+ .......|..++++|+++.|+... ...+++
T Consensus 319 ~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~--~l---~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~ 392 (695)
T 2bkl_A 319 SASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVR--TV---QLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYK 392 (695)
T ss_dssp SCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEE--EC---CCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEE
T ss_pred CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeE--Ee---cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence 4567778887 6778888889998888 22 11111 01 111256678889999998877332 245666
Q ss_pred Ee
Q 010287 511 YY 512 (513)
Q Consensus 511 ~~ 512 (513)
|+
T Consensus 393 ~d 394 (695)
T 2bkl_A 393 TS 394 (695)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 191
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.52 E-value=4e-11 Score=116.88 Aligned_cols=295 Identities=10% Similarity=0.051 Sum_probs=183.1
Q ss_pred ccccEEEEEEcCCCCEEEeecCCCcEEEEEee--CCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccc
Q 010287 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERT--DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (513)
Q Consensus 34 h~~~V~~v~~sp~g~~latg~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (513)
....+..+.|||||+++++++.++.|.+||+. +.+. ...+...
T Consensus 195 ~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-----------------------v~~i~~G------------ 239 (567)
T 1qks_A 195 TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-----------------------VAEIKIG------------ 239 (567)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE-----------------------EEEEECC------------
T ss_pred CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE-----------------------eEEEecC------------
Confidence 34467799999999999999999999999974 3321 1112111
Q ss_pred cccceeEEEee--cCCCceEEEee-cCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287 112 EEKINKIRWCQ--SANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (513)
Q Consensus 112 ~~~i~~i~~~~--~~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 188 (513)
.....++|++ .+++++++++. .+++|.++|..+.+........... .++
T Consensus 240 -~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~----------------------~~~----- 291 (567)
T 1qks_A 240 -SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT----------------------YDE----- 291 (567)
T ss_dssp -SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC----------------------TTT-----
T ss_pred -CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccc----------------------ccc-----
Confidence 3356888951 03787888774 4699999998887665543221100 000
Q ss_pred ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeecccc-CCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcc
Q 010287 189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA--DDLRINLWNLEISNQ 265 (513)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~ 265 (513)
...|. ..+..+..++++..++.. .+|.|.++|....+.
T Consensus 292 ---------------------------------------~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~ 332 (567)
T 1qks_A 292 ---------------------------------------QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN 332 (567)
T ss_dssp ---------------------------------------CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE
T ss_pred ---------------------------------------ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc
Confidence 00111 146678888887776665 589999999875442
Q ss_pred eeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecc-ccCCCCccccccccc-cE
Q 010287 266 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE-QEAPGTRSFFTEIIA-SI 343 (513)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~v 343 (513)
.. +. .+ .......++.|+|++..+++++..++.|.++|+.++++. ..+.. ...+ |.+ .+
T Consensus 333 ~~-v~-----~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~----~~i~vgg~~P--------hpg~g~ 393 (567)
T 1qks_A 333 LK-TT-----EI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV----AIEDTGGQTP--------HPGRGA 393 (567)
T ss_dssp EE-EE-----EE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE----EEEECSSSSB--------CCTTCE
T ss_pred ce-ee-----ee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEE----EEEeccCcCC--------CCccce
Confidence 21 11 11 123456789999999444555557899999999988752 22222 1111 111 22
Q ss_pred EEEEEeecC-CEEEEEe--CCeEEEEEccCC------CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEE
Q 010287 344 SDIKFARNG-RHILSRD--YMTLKLWDINMD------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 414 (513)
Q Consensus 344 ~~i~~sp~~-~~l~~~~--~~~v~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 414 (513)
. + ++|++ ...+++. ++.|.++|.... .+.++++...... -..+..+|++++|.+
T Consensus 394 ~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g---------------~~~i~~~p~~~~l~v 456 (567)
T 1qks_A 394 N-F-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG---------------SLFIKTHPNSQYLYV 456 (567)
T ss_dssp E-E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC---------------CCCEECCTTCSEEEE
T ss_pred e-e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCC---------------CEEEEeCCCCCeEEE
Confidence 2 2 57874 4555553 389999998752 2344555443211 014788999999988
Q ss_pred EeC-------CCcEEEEecCCC-----Cccceeec--------CCCCceeEEEEcCCCCceeeec-----CCCeEEE
Q 010287 415 GSY-------SNLFRVFGCSEG-----SAESTTLE--------ASKNPMRRQVQTPSRPSRPLGS-----LSGVVRR 466 (513)
Q Consensus 415 ~~~-------dg~i~vwd~~~~-----~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~-----~d~~i~~ 466 (513)
... .++|.++|+.+. ......+. .....+..+.|+++|+.+.... .++.|.+
T Consensus 457 ~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v 533 (567)
T 1qks_A 457 DATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVV 533 (567)
T ss_dssp ECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEE
T ss_pred ecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEE
Confidence 663 459999999866 22212221 1245678999999999876653 2577777
No 192
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.51 E-value=1.4e-11 Score=109.13 Aligned_cols=184 Identities=11% Similarity=0.091 Sum_probs=127.6
Q ss_pred CeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccc-cCCeEEEEEeCCCCeEEEEEeC-CCcEEEEEc
Q 010287 234 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSS-KGSIRLIDM 311 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~-dg~i~vwd~ 311 (513)
.+.++.++|+|++++ +.++.|..||. +++...++ ..+ ...+.++.+.+++ +++++.+. ++.|..+|.
T Consensus 38 ~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~--------~~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~ 106 (276)
T 3no2_A 38 ECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNI--------AAPAGCEMQTARILPDG-NALVAWCGHPSTILEVNM 106 (276)
T ss_dssp CCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEE--------ECCTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT
T ss_pred CCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEE--------cCCCCccccccEECCCC-CEEEEecCCCCEEEEEeC
Confidence 367788999999888 55678999998 56655543 222 3467889999999 88888777 788888885
Q ss_pred CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccccccc
Q 010287 312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 390 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 390 (513)
+++.. ..+..... ...+......+++.++|.++++... +.|..||.. ++.+..+......
T Consensus 107 -~Gk~l----~~~~~~~~------~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~--G~~~w~~~~~~~~------ 167 (276)
T 3no2_A 107 -KGEVL----SKTEFETG------IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN--GQLLNSVKLSGTP------ 167 (276)
T ss_dssp -TSCEE----EEEEECCS------CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECSSCC------
T ss_pred -CCCEE----EEEeccCC------CCcccccccCceECCCCCEEEEecCCCEEEEECCC--CCEEEEEECCCCc------
Confidence 55542 22221110 0111123455678899999998775 999999986 7777777654321
Q ss_pred ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCC------CCceeEEEEcCCCCceeee
Q 010287 391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS------KNPMRRQVQTPSRPSRPLG 458 (513)
Q Consensus 391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~ 458 (513)
..+...++|+++++++.++.|..+|..+++. +-.+... ...+..+...++|..+++.
T Consensus 168 ----------~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~-~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 168 ----------FSSAFLDNGDCLVACGDAHCFVQLNLESNRI-VRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp ----------CEEEECTTSCEEEECBTTSEEEEECTTTCCE-EEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred ----------cceeEcCCCCEEEEeCCCCeEEEEeCcCCcE-EEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 2677889999999999888999999998843 3333221 2236677888888887776
No 193
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.50 E-value=1.8e-10 Score=103.96 Aligned_cols=270 Identities=9% Similarity=0.011 Sum_probs=174.6
Q ss_pred cccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccc
Q 010287 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (513)
Q Consensus 35 ~~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (513)
...+.+++++++|.+.++...++.|.+|+.. ++.. . ..+..+. ..
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~---------------------~-~~~~~~~------------~~ 63 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK---------------------E-FEVPTPD------------AK 63 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE---------------------E-EECSSTT------------CC
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE---------------------E-EECCCCC------------Cc
Confidence 4678999999999988887778899999865 3210 0 0111111 45
Q ss_pred ceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCC
Q 010287 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (513)
Q Consensus 115 i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (513)
+.++++ .+++.++++...++.|..+|.. ++.... ..
T Consensus 64 ~~~i~~--~~~g~l~v~~~~~~~v~~~d~~-g~~~~~-~~---------------------------------------- 99 (300)
T 2qc5_A 64 VMCLIV--SSLGDIWFTENGANKIGKLSKK-GGFTEY-PL---------------------------------------- 99 (300)
T ss_dssp EEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEE-EC----------------------------------------
T ss_pred ceeEEE--CCCCCEEEEecCCCeEEEECCC-CCeEEe-cC----------------------------------------
Confidence 788888 4567666666667889999877 443211 00
Q ss_pred CCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccC
Q 010287 195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 273 (513)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~ 273 (513)
......+.++++.++++++++. .++.|..+|.. ++.. ..
T Consensus 100 ----------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~---- 139 (300)
T 2qc5_A 100 ----------------------------------PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EY---- 139 (300)
T ss_dssp ----------------------------------SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EE----
T ss_pred ----------------------------------CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-Ec----
Confidence 0111347789999999888877 58899999987 3322 11
Q ss_pred ccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCC
Q 010287 274 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 353 (513)
Q Consensus 274 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~ 353 (513)
.+......+..+++.+++ +++++...++.|..+|. ++... .+... .....+..++++++|.
T Consensus 140 --~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~~----------~~~~~~~~i~~d~~g~ 200 (300)
T 2qc5_A 140 --DLPNKGSYPAFITLGSDN-ALWFTENQNNSIGRITN-TGKLE-----EYPLP----------TNAAAPVGITSGNDGA 200 (300)
T ss_dssp --ECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEECS----------STTCCEEEEEECTTSS
T ss_pred --cCCCCCCCceeEEECCCC-CEEEEecCCCeEEEECC-CCcEE-----EeeCC----------CCCCCcceEEECCCCC
Confidence 122234568999999998 77776666889999997 44421 12111 1124588999999998
Q ss_pred EEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc
Q 010287 354 HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 432 (513)
Q Consensus 354 ~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 432 (513)
+.++... +.|.+||.. +.... +...... ..+..++++++|++.++...++.|..|+.. +...
T Consensus 201 l~v~~~~~~~i~~~~~~--g~~~~-~~~~~~~-------------~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~ 263 (300)
T 2qc5_A 201 LWFVEIMGNKIGRITTT--GEISE-YDIPTPN-------------ARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQ 263 (300)
T ss_dssp EEEEETTTTEEEEECTT--CCEEE-EECSSTT-------------CCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE
T ss_pred EEEEccCCCEEEEEcCC--CcEEE-EECCCCC-------------CCceEEEECCCCCEEEeccCCCeEEEECCC-CcEE
Confidence 7776655 789999973 43322 2111100 113489999999977776667899999984 4222
Q ss_pred ceeecCCCCceeEEEEcCCCCceeeec
Q 010287 433 STTLEASKNPMRRQVQTPSRPSRPLGS 459 (513)
Q Consensus 433 ~~~~~~~~~~v~~~~~~~~~~~l~~~~ 459 (513)
...+......+..+++.+++.+.++..
T Consensus 264 ~~~~~~~~~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 264 EYQLQTENAEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp EEECCSTTCCCCCEEECTTSCEEEECS
T ss_pred EEECCccCCccceeEeCCCCCEEEEcc
Confidence 222333345677899999988666654
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.48 E-value=3.8e-11 Score=106.66 Aligned_cols=233 Identities=6% Similarity=-0.059 Sum_probs=148.1
Q ss_pred CeEEEEeccCCCEEE-EE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287 234 HINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 311 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~-s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~ 311 (513)
...++++++++++++ +. .++.|.+|+..+..... . ...+...+.++++++++ +++++.. ++.|.+||.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~--~------~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~ 94 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV--L------PFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAA 94 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE--C------CCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce--E------eeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeC
Confidence 578899999999777 53 58999999876433211 0 11223457889999998 6666655 889999997
Q ss_pred CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccccccc
Q 010287 312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 390 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 390 (513)
..... ..+... ....+..++++|+|.++++... +.|.+|+... ...........
T Consensus 95 ~~~~~-----~~~~~~-----------~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~-------- 149 (270)
T 1rwi_B 95 GSNNQ-----TVLPFD-----------GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS-KTQTVLPFTGL-------- 149 (270)
T ss_dssp TCSCC-----EECCCC-----------SCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC-CSCEECCCCSC--------
T ss_pred CCceE-----eeeecC-----------CcCCCcceEECCCCCEEEEECCCCEEEEEECCC-ceeEeeccccC--------
Confidence 65432 111110 1135789999999987777554 8899997543 22211111110
Q ss_pred ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCC
Q 010287 391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA 470 (513)
Q Consensus 391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~ 470 (513)
.....++++++|+++++...++.|.+|+....... ............+++.+++.++++...++.|.++...
T Consensus 150 -------~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 150 -------NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp -------CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred -------CCceeEEEeCCCCEEEEECCCCEEEEEecCCCceE-eecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence 01237999999997777777889999998765322 2222333567789999999877777777777773222
Q ss_pred CCCccccCCccccccCCeeEEEEeCCCCEEEEEc-CCcEEEEe
Q 010287 471 DNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 512 (513)
Q Consensus 471 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 512 (513)
... .......+...+..++++|+|+++++.. ++.+.+|.
T Consensus 222 ~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 222 STT---STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 261 (270)
T ss_dssp CSC---CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred CCc---ceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence 111 0001112235789999999999777665 67777764
No 195
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.46 E-value=4.8e-11 Score=109.11 Aligned_cols=231 Identities=9% Similarity=-0.021 Sum_probs=145.5
Q ss_pred eEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC
Q 010287 235 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 313 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 313 (513)
...+++. +++.+++. .++.|.+||..+++...++ . .......+++++++ +++++...++.|.+||+.+
T Consensus 46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i--------~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t 114 (328)
T 3dsm_A 46 AQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI--------T-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKT 114 (328)
T ss_dssp EEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE--------E-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTT
T ss_pred ceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc--------C-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCC
Confidence 4566664 34455555 5899999999987654332 2 24568899999998 7777666899999999988
Q ss_pred cccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--CCeEEEEEccCCCCCeeeeecccccccccccc
Q 010287 314 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 391 (513)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
++.. ..+...... +.......+++ .+++++++.. ++.|.++|..+ ++.+..+.....+
T Consensus 115 ~~~~----~~i~~g~~~-------~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t-~~~~~~i~~g~~p------- 174 (328)
T 3dsm_A 115 YEIT----GYIECPDMD-------MESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTET-DKVVDELTIGIQP------- 174 (328)
T ss_dssp TEEE----EEEECTTCC-------TTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTT-TEEEEEEECSSCB-------
T ss_pred CeEE----EEEEcCCcc-------ccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCC-CeEEEEEEcCCCc-------
Confidence 7652 222221100 00013445666 4455555542 48999999986 6666665433221
Q ss_pred cccCCccceeeEEEeCCCCEEEEEeCC----------CcEEEEecCCCCccceeecCC-CCceeEEEEcCCCCceeeecC
Q 010287 392 YENDSIFDKFECCLSGDGGRVATGSYS----------NLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSRPLGSL 460 (513)
Q Consensus 392 ~~~~~~~~v~~~~~s~~~~~l~~~~~d----------g~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~ 460 (513)
..+.++|+|++++++..+ +.|.++|..+++ ....+... ......++++|+++.|..+..
T Consensus 175 ---------~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~-v~~~~~~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 175 ---------TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT-VEKQFKFKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp ---------CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE-EEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred ---------cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe-EEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence 268899999987776654 789999998773 33334322 235779999999998877654
Q ss_pred CCeEEEecC--CCCCccccCCccccc-cCCeeEEEEeCC-CCEEEEE-----cCCcEEEEe
Q 010287 461 SGVVRRVKG--ADNSALDANGNAFDF-SMKLLHLAWHPS-ENSIACA-----ASNSLYMYY 512 (513)
Q Consensus 461 d~~i~~~~~--~~~~~~~~~~~~~~~-~~~i~~~~~sp~-~~~la~~-----~~~~~~i~~ 512 (513)
.|.+++. .+... ...... ......++++|+ +.++++. ..+.+.+|+
T Consensus 245 --~v~~~d~~t~~~~~----~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 245 --DIWRMPVEADRVPV----RPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp --SEEEEETTCSSCCS----SCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred --EEEEEECCCCceee----eeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 5555222 21110 011111 467899999995 5555554 267787775
No 196
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.46 E-value=5.6e-11 Score=108.15 Aligned_cols=159 Identities=8% Similarity=0.117 Sum_probs=101.6
Q ss_pred CeEEEEeccCCCEEEEE-cC---------------CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe----CCC
Q 010287 234 HINSISNNSDGETFISA-DD---------------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH----PTH 293 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~-~d---------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~ 293 (513)
.+.+++++++++++++. .+ +.|..|+.. ++ ... +..+......++++ |++
T Consensus 118 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~--------~~~~~~~~~~i~~~~~~d~dg 187 (314)
T 1pjx_A 118 GCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MIQ--------VDTAFQFPNGIAVRHMNDGRP 187 (314)
T ss_dssp CCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EEE--------EEEEESSEEEEEEEECTTSCE
T ss_pred CCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC-EEE--------eccCCCCcceEEEecccCCCC
Confidence 36789999999888776 44 567777654 22 211 12233456889999 998
Q ss_pred CeEEEEEeCCCcEEEEEcC-CcccccccceeeccccCCCCcccccccc-ccEEEEEEeecCCEEEEEeC-CeEEEEEccC
Q 010287 294 CNMLAYSSSKGSIRLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEII-ASISDIKFARNGRHILSRDY-MTLKLWDINM 370 (513)
Q Consensus 294 ~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~ 370 (513)
..++++...++.|.+||+. ++.... ...+.. +.++. ..+..++++++|.++++... +.|.+||..+
T Consensus 188 ~~l~v~~~~~~~i~~~~~~~~g~~~~--~~~~~~---------~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~ 256 (314)
T 1pjx_A 188 YQLIVAETPTKKLWSYDIKGPAKIEN--KKVWGH---------IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG 256 (314)
T ss_dssp EEEEEEETTTTEEEEEEEEETTEEEE--EEEEEE---------CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred CEEEEEECCCCeEEEEECCCCCcccc--ceEEEE---------CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC
Confidence 3344555568999999976 332210 011111 11111 34778999999998887654 8999999874
Q ss_pred CCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEE-EEeCCCcEEEEecCCC
Q 010287 371 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEG 429 (513)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~ 429 (513)
++.+..+..+... +.+++|+|+++.|+ +...++.|..|++...
T Consensus 257 -g~~~~~~~~~~~~---------------~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 257 -GQPKMRIRCPFEK---------------PSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp -BSCSEEEECSSSC---------------EEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred -CcEeEEEeCCCCC---------------ceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 5555555433221 34899999999555 4456688999998754
No 197
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.45 E-value=8.1e-10 Score=99.61 Aligned_cols=233 Identities=4% Similarity=-0.044 Sum_probs=150.1
Q ss_pred CeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287 234 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 312 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 312 (513)
.+.++++.++++++++. .++.|..+|.. ++.. .. .+......+.++++.+++ .++++...++.|..+|..
T Consensus 63 ~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~------~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~ 133 (300)
T 2qc5_A 63 KVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EY------PLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD 133 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EE------ECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT
T ss_pred cceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-Ee------cCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC
Confidence 47789999999888877 57899999987 4322 11 122234568999999998 777777768899999976
Q ss_pred CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccc
Q 010287 313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL 391 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
+... .+... .....+.++++++++++.++... +.|..||.. ++... +......
T Consensus 134 -g~~~-----~~~~~----------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~--g~~~~-~~~~~~~------- 187 (300)
T 2qc5_A 134 -GTIY-----EYDLP----------NKGSYPAFITLGSDNALWFTENQNNSIGRITNT--GKLEE-YPLPTNA------- 187 (300)
T ss_dssp -SCEE-----EEECS----------STTCCEEEEEECTTSSEEEEETTTTEEEEECTT--CCEEE-EECSSTT-------
T ss_pred -CCEE-----EccCC----------CCCCCceeEEECCCCCEEEEecCCCeEEEECCC--CcEEE-eeCCCCC-------
Confidence 4431 11111 01145789999999996666654 889999873 44332 2211110
Q ss_pred cccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCC
Q 010287 392 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD 471 (513)
Q Consensus 392 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~ 471 (513)
.....++++++|++.++....+.|.+|+. ++......+......+..+++.+++++.++...++.|..+....
T Consensus 188 ------~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g 260 (300)
T 2qc5_A 188 ------AAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDN 260 (300)
T ss_dssp ------CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTS
T ss_pred ------CCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCCC
Confidence 11347899999987777667788999998 44232233334455678999999998777766666666632211
Q ss_pred CCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287 472 NSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 472 ~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 512 (513)
.. ...........+.++++.++|+++++... ++..|+
T Consensus 261 ~~---~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~i~~~~ 297 (300)
T 2qc5_A 261 TI---QEYQLQTENAEPHGITFGKDGSVWFALKC-KIGKLN 297 (300)
T ss_dssp CE---EEEECCSTTCCCCCEEECTTSCEEEECSS-EEEEEE
T ss_pred cE---EEEECCccCCccceeEeCCCCCEEEEccC-ceEEeC
Confidence 10 00001112456899999999997776653 777664
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.43 E-value=2.7e-11 Score=123.84 Aligned_cols=234 Identities=11% Similarity=0.074 Sum_probs=143.5
Q ss_pred CCeEEEEeccCCCEEEEE-c-C----CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC--
Q 010287 233 YHINSISNNSDGETFISA-D-D----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG-- 304 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~-~-d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-- 304 (513)
..+..++|+|||++|+.+ + + ..|++||+.+++.... ..+...+..++|+|| ..+ +.++.++
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~---------~~~~~~~~~~~wspD-~~l-~~~~~~~~~ 231 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD---------ELKWVKFSGLAWLGN-DAL-LYSRFAEPK 231 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE---------EEEEEESCCCEESTT-SEE-EEEECCCC-
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc---------cCCCceeccEEEECC-CEE-EEEEecCcc
Confidence 347789999999999876 3 2 3699999997764321 111222357899999 454 4445544
Q ss_pred ------------cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-----CeEEEE
Q 010287 305 ------------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-----MTLKLW 366 (513)
Q Consensus 305 ------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-----~~v~iw 366 (513)
.|.+|++.++..... ..+.... +...+..+.|||||++|+... + ..|++|
T Consensus 232 ~~~~~~~~~~~~~v~~~~lgt~~~~~~--lv~~~~~----------~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~ 299 (741)
T 1yr2_A 232 EGQAFQALNYNQTVWLHRLGTPQSADQ--PVFATPE----------LPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVA 299 (741)
T ss_dssp -------CCCCCEEEEEETTSCGGGCE--EEECCTT----------CTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEE
T ss_pred cccccccCCCCCEEEEEECCCCchhCE--EEeccCC----------CCeEEEEEEECCCCCEEEEEEEccCCCcceEEEE
Confidence 388899876553211 1222211 113578999999999888643 2 489999
Q ss_pred EccCCC--CCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC----CCcEEEEecCCCC-ccceeecCC
Q 010287 367 DINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY----SNLFRVFGCSEGS-AESTTLEAS 439 (513)
Q Consensus 367 d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~~-~~~~~~~~~ 439 (513)
|+.. + +....+..+.... ... ++|+|+.|+..+. ++.|.+||+.++. .....+..+
T Consensus 300 d~~~-~~~~~~~~l~~~~~~~---------------~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 362 (741)
T 1yr2_A 300 RVTN-GKIGPVTALIPDLKAQ---------------WDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES 362 (741)
T ss_dssp EEET-TEECCCEEEECSSSSC---------------EEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC
T ss_pred ECCC-CCCcccEEecCCCCce---------------EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC
Confidence 9985 3 2144444333221 123 4589998887765 3459999988642 333444455
Q ss_pred CCceeEEEEcCCCCceeeecCCCeEEE--ec--CCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-----CCcEEE
Q 010287 440 KNPMRRQVQTPSRPSRPLGSLSGVVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-----SNSLYM 510 (513)
Q Consensus 440 ~~~v~~~~~~~~~~~l~~~~~d~~i~~--~~--~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-----~~~~~i 510 (513)
...+..+.+. ++.++++...|+..+| .. +.... .+ .......|..++++|+++.|+... ...+++
T Consensus 363 ~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~--~l---~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~ 436 (741)
T 1yr2_A 363 KDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG--AV---SLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLA 436 (741)
T ss_dssp SSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE--EC---BCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEE
T ss_pred CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee--ec---cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence 5556667776 5667788888988877 22 11111 01 111256788999999998776332 245666
Q ss_pred Ee
Q 010287 511 YY 512 (513)
Q Consensus 511 ~~ 512 (513)
|+
T Consensus 437 ~d 438 (741)
T 1yr2_A 437 LD 438 (741)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 199
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.43 E-value=3.6e-11 Score=109.95 Aligned_cols=249 Identities=8% Similarity=0.024 Sum_probs=152.7
Q ss_pred ccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (513)
Q Consensus 36 ~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 115 (513)
+....+.++. +++.++...++.|.+||..+++.+ ..+.. . ...
T Consensus 44 ~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~-----------------------~~i~~-~------------~~p 86 (328)
T 3dsm_A 44 DVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEV-----------------------GRITG-F------------TSP 86 (328)
T ss_dssp SCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEE-----------------------EEEEC-C------------SSE
T ss_pred ccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEE-----------------------EEcCC-C------------CCC
Confidence 4567777753 455566667789999998776531 12211 1 447
Q ss_pred eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCC
Q 010287 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (513)
Q Consensus 116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 195 (513)
..+++++ ++..+++...++.|.+||..+++..........
T Consensus 87 ~~i~~~~--~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~-------------------------------------- 126 (328)
T 3dsm_A 87 RYIHFLS--DEKAYVTQIWDYRIFIINPKTYEITGYIECPDM-------------------------------------- 126 (328)
T ss_dssp EEEEEEE--TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC--------------------------------------
T ss_pred cEEEEeC--CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc--------------------------------------
Confidence 7888865 554444444899999999998876543221110
Q ss_pred CCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-c-CCeEEEEEcCCCcceeeecccC
Q 010287 196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQSFNIVDVK 273 (513)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~-d~~i~vwd~~~~~~~~~~~~~~ 273 (513)
.+.......+++ .+++.+++. . ++.|.++|+++++....+
T Consensus 127 ---------------------------------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i---- 168 (328)
T 3dsm_A 127 ---------------------------------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDEL---- 168 (328)
T ss_dssp ---------------------------------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEE----
T ss_pred ---------------------------------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEE----
Confidence 000012334555 344445554 3 899999999876543322
Q ss_pred ccccccccCCeEEEEEeCCCCeEEEEEeCC----------CcEEEEEcCCcccccccceeeccccCCCCccccccccccE
Q 010287 274 PANMEDLTEVITSAEFHPTHCNMLAYSSSK----------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 343 (513)
Q Consensus 274 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 343 (513)
.. ......+.++|++ ++++++..+ +.|.++|..+++.. ..+.... ....
T Consensus 169 ----~~-g~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~----~~~~~~~-----------g~~p 227 (328)
T 3dsm_A 169 ----TI-GIQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE----KQFKFKL-----------GDWP 227 (328)
T ss_dssp ----EC-SSCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE----EEEECCT-----------TCCC
T ss_pred ----Ec-CCCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCeEE----EEEecCC-----------CCCc
Confidence 11 2335678899998 777666554 78999999887642 2222211 0247
Q ss_pred EEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC-CCCEEEEE----eCC
Q 010287 344 SDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATG----SYS 418 (513)
Q Consensus 344 ~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~----~~d 418 (513)
..++++|+++.|++++. .|.+||..+ ++........... . ....++++| ++.++++. ..+
T Consensus 228 ~~la~~~d~~~lyv~~~-~v~~~d~~t-~~~~~~~~~~~~~----------~---~p~gi~vdp~~g~lyva~~~~y~~~ 292 (328)
T 3dsm_A 228 SEVQLNGTRDTLYWINN-DIWRMPVEA-DRVPVRPFLEFRD----------T---KYYGLTVNPNNGEVYVADAIDYQQQ 292 (328)
T ss_dssp EEEEECTTSCEEEEESS-SEEEEETTC-SSCCSSCSBCCCS----------S---CEEEEEECTTTCCEEEEECTTSSSE
T ss_pred eeEEEecCCCEEEEEcc-EEEEEECCC-CceeeeeeecCCC----------C---ceEEEEEcCCCCeEEEEcccccccC
Confidence 88999999999888765 899999875 4432111111000 0 023799999 55555565 578
Q ss_pred CcEEEEecCCCCccceeec
Q 010287 419 NLFRVFGCSEGSAESTTLE 437 (513)
Q Consensus 419 g~i~vwd~~~~~~~~~~~~ 437 (513)
+.|.+||.. + +....++
T Consensus 293 ~~V~v~d~~-g-~~~~~i~ 309 (328)
T 3dsm_A 293 GIVYRYSPQ-G-KLIDEFY 309 (328)
T ss_dssp EEEEEECTT-C-CEEEEEE
T ss_pred CEEEEECCC-C-CEEEEEE
Confidence 899999998 5 4444443
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.43 E-value=1.4e-11 Score=125.92 Aligned_cols=159 Identities=9% Similarity=0.019 Sum_probs=93.5
Q ss_pred CeEEEEeccCCCEEEEE-cC-----CeEEEEEcCCCcce-eeecccCccccccccCCeEEEEEeCCCCeEEEEEeC----
Q 010287 234 HINSISNNSDGETFISA-DD-----LRINLWNLEISNQS-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---- 302 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~-~d-----~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---- 302 (513)
.+..+.|+|||++|+.. .+ ..|++||+.++... .. .+..+...+.... +|++ ..|+..+.
T Consensus 269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~-------~l~~~~~~~~~~~-~~dg-~~l~~~s~~~~~ 339 (741)
T 1yr2_A 269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT-------ALIPDLKAQWDFV-DGVG-DQLWFVSGDGAP 339 (741)
T ss_dssp CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE-------EEECSSSSCEEEE-EEET-TEEEEEECTTCT
T ss_pred EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE-------EecCCCCceEEEE-eccC-CEEEEEECCCCC
Confidence 47789999999988875 43 38999999865211 21 2233333444443 4777 56665555
Q ss_pred CCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecc
Q 010287 303 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH 381 (513)
Q Consensus 303 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~ 381 (513)
++.|.+||+.++. .. ...+- ..+...+..+.++ ++.++++.. ++..+||.+...+.....+..+
T Consensus 340 ~~~l~~~d~~~~~--~~-~~~l~-----------~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~ 404 (741)
T 1yr2_A 340 LKKIVRVDLSGST--PR-FDTVV-----------PESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLP 404 (741)
T ss_dssp TCEEEEEECSSSS--CE-EEEEE-----------CCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCS
T ss_pred CCEEEEEeCCCCc--cc-cEEEe-----------cCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCC
Confidence 3459999987642 00 11111 1112346677777 555666654 4776666655335545544432
Q ss_pred cccccccccccccCCccceeeEEEeCCCCEEEEE----eCCCcEEEEecCCCC
Q 010287 382 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG----SYSNLFRVFGCSEGS 430 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~dg~i~vwd~~~~~ 430 (513)
... .+..+.++|+++.|+.. ...++|++||+.++.
T Consensus 405 ~~~--------------~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 405 GIG--------------SASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp SSC--------------EEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCe--------------EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 111 13478889998866522 245789999998763
No 201
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.40 E-value=1.4e-10 Score=102.79 Aligned_cols=225 Identities=10% Similarity=0.069 Sum_probs=148.3
Q ss_pred CCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccceeEEEeecCC
Q 010287 46 SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSAN 125 (513)
Q Consensus 46 ~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~i~~~~~~~ 125 (513)
.+++|++++.++.|.+||.++++.. -.+..+.. ..++++.+.| +
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~-----------------------w~~~~~~~-----------~~~~~~~~~p--d 47 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIV-----------------------WEYPLEKG-----------WECNSVAATK--A 47 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEE-----------------------EEEECCTT-----------CCCCEEEECT--T
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEE-----------------------EEeCCCcc-----------CCCcCeEECC--C
Confidence 3578999999999999998777641 22222220 2478888854 7
Q ss_pred CceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCC
Q 010287 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (513)
Q Consensus 126 ~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 205 (513)
+++++ +.++.|..||. +++.......
T Consensus 48 G~ilv--s~~~~V~~~d~-~G~~~W~~~~--------------------------------------------------- 73 (276)
T 3no2_A 48 GEILF--SYSKGAKMITR-DGRELWNIAA--------------------------------------------------- 73 (276)
T ss_dssp SCEEE--ECBSEEEEECT-TSCEEEEEEC---------------------------------------------------
T ss_pred CCEEE--eCCCCEEEECC-CCCEEEEEcC---------------------------------------------------
Confidence 77777 45788999998 6664443221
Q ss_pred ceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-c-CCeEEEEEcCCCcceeeecccCccccccccCC
Q 010287 206 SLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQSFNIVDVKPANMEDLTEV 283 (513)
Q Consensus 206 ~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (513)
.....+.++.+.++|+++++. . ++.|..+|.. ++...++ .... ....+...
T Consensus 74 ------------------------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~-~~~~-~~~~~~~~ 126 (276)
T 3no2_A 74 ------------------------PAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKT-EFET-GIERPHAQ 126 (276)
T ss_dssp ------------------------CTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEE-EECC-SCSSGGGS
T ss_pred ------------------------CCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEE-eccC-CCCccccc
Confidence 111236678899999999986 5 6777777763 4433332 1110 11122233
Q ss_pred eEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-Ce
Q 010287 284 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MT 362 (513)
Q Consensus 284 i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~ 362 (513)
...+...+++ +++++...++.|..||.. ++.. ..+... ....++...++|.+++++.+ +.
T Consensus 127 ~~~v~~~~~G-~~lv~~~~~~~v~~~d~~-G~~~----w~~~~~-------------~~~~~~~~~~~g~~~v~~~~~~~ 187 (276)
T 3no2_A 127 FRQINKNKKG-NYLVPLFATSEVREIAPN-GQLL----NSVKLS-------------GTPFSSAFLDNGDCLVACGDAHC 187 (276)
T ss_dssp CSCCEECTTS-CEEEEETTTTEEEEECTT-SCEE----EEEECS-------------SCCCEEEECTTSCEEEECBTTSE
T ss_pred ccCceECCCC-CEEEEecCCCEEEEECCC-CCEE----EEEECC-------------CCccceeEcCCCCEEEEeCCCCe
Confidence 4566788998 899999999999999987 7763 333322 23456777889999998776 78
Q ss_pred EEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe
Q 010287 363 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 416 (513)
Q Consensus 363 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 416 (513)
|..+|..+ ++.+..+....... ..+..+..+...++|+++++..
T Consensus 188 v~~~d~~t-G~~~w~~~~~~~~~---------~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 188 FVQLNLES-NRIVRRVNANDIEG---------VQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEECTTT-CCEEEEEEGGGSBS---------CCCSEEEEEEECTTSCEEEEEE
T ss_pred EEEEeCcC-CcEEEEecCCCCCC---------ccccccccceEcCCCCEEEEec
Confidence 99999886 88887776433110 0122245788889999888764
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.37 E-value=4.9e-10 Score=101.88 Aligned_cols=195 Identities=11% Similarity=0.028 Sum_probs=122.3
Q ss_pred CCeEEEEeccC-CCEEEEEcCCeEEEEEcCCCcceeee-cccCccccccccCCeEEEEEeCCCCeEEEEEeCC-------
Q 010287 233 YHINSISNNSD-GETFISADDLRINLWNLEISNQSFNI-VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK------- 303 (513)
Q Consensus 233 ~~v~~~~~~~~-~~~l~s~~d~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------- 303 (513)
..+.+++++++ ++++++...+.|.+||.. ++. ..+ ... ........+.++++++++ +++++...+
T Consensus 71 ~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~-~~~~~~~---~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~ 144 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTF-EEIAKKD---SEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADY 144 (314)
T ss_dssp CCEEEEEECSSSSEEEEEETTTEEEEEETT-SCE-EECCSBC---TTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCC
T ss_pred CCCceEEEecCCCcEEEEECCCCEEEEeCC-CCE-EEEEecc---CCCccccCCcCEEECCCC-CEEEEecCcccccccc
Confidence 45788999999 776666655589999987 442 221 100 001123457899999998 777766554
Q ss_pred --------CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe----ecCCEEEEEe-C-CeEEEEEcc
Q 010287 304 --------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA----RNGRHILSRD-Y-MTLKLWDIN 369 (513)
Q Consensus 304 --------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s----p~~~~l~~~~-~-~~v~iwd~~ 369 (513)
+.|..||.. ++. ..... +......++++ |+++.++.++ . +.|.+||+.
T Consensus 145 ~~~~~~~~~~l~~~~~~-g~~----~~~~~-------------~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~ 206 (314)
T 1pjx_A 145 TRSMQEKFGSIYCFTTD-GQM----IQVDT-------------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK 206 (314)
T ss_dssp CBTTSSSCEEEEEECTT-SCE----EEEEE-------------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred cccccCCCCeEEEECCC-CCE----EEecc-------------CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECC
Confidence 466666654 332 11111 11346789999 9997666543 3 899999986
Q ss_pred CCCCC-----eeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCcee
Q 010287 370 MDSGP-----VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR 444 (513)
Q Consensus 370 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~ 444 (513)
..+.. ...+..+. ......++++++|+++++...++.|.+||..++. ....+..+...+.
T Consensus 207 ~~g~~~~~~~~~~~~~~~--------------~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~-~~~~~~~~~~~~~ 271 (314)
T 1pjx_A 207 GPAKIENKKVWGHIPGTH--------------EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ-PKMRIRCPFEKPS 271 (314)
T ss_dssp ETTEEEEEEEEEECCCCS--------------SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS-CSEEEECSSSCEE
T ss_pred CCCccccceEEEECCCCC--------------CCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc-EeEEEeCCCCCce
Confidence 21321 11111110 0012378999999988888788899999988653 3345555657788
Q ss_pred EEEEcCCCCce-eeecCCCeEEE
Q 010287 445 RQVQTPSRPSR-PLGSLSGVVRR 466 (513)
Q Consensus 445 ~~~~~~~~~~l-~~~~~d~~i~~ 466 (513)
.++++++++.| ++...++.|..
T Consensus 272 ~i~~~~dg~~l~v~~~~~~~l~~ 294 (314)
T 1pjx_A 272 NLHFKPQTKTIFVTEHENNAVWK 294 (314)
T ss_dssp EEEECTTSSEEEEEETTTTEEEE
T ss_pred eEEECCCCCEEEEEeCCCCeEEE
Confidence 99999999955 44445555555
No 203
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.34 E-value=1.1e-09 Score=98.61 Aligned_cols=234 Identities=8% Similarity=0.067 Sum_probs=147.0
Q ss_pred ccEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccc
Q 010287 36 DIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (513)
Q Consensus 36 ~~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (513)
.--.+..|+|+ +.++++...++.|..|+..+++.. .+ ... ..
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~------------------------~~-~~~------------~~ 55 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ------------------------RV-TMD------------AP 55 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE------------------------EE-ECS------------SC
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE------------------------EE-eCC------------Cc
Confidence 34568889996 556677777889999997654420 01 111 55
Q ss_pred ceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCC
Q 010287 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (513)
Q Consensus 115 i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (513)
+.++++. +++.++ ++. ++.|.+||.++++.........
T Consensus 56 ~~~i~~~--~dG~l~-v~~-~~~l~~~d~~~g~~~~~~~~~~-------------------------------------- 93 (297)
T 3g4e_A 56 VSSVALR--QSGGYV-ATI-GTKFCALNWKEQSAVVLATVDN-------------------------------------- 93 (297)
T ss_dssp EEEEEEB--TTSSEE-EEE-TTEEEEEETTTTEEEEEEECCT--------------------------------------
T ss_pred eEEEEEC--CCCCEE-EEE-CCeEEEEECCCCcEEEEEecCC--------------------------------------
Confidence 8899994 477644 444 5679999998876544322110
Q ss_pred CCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cC---------CeEEEEEcCCCc
Q 010287 195 NDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD---------LRINLWNLEISN 264 (513)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d---------~~i~vwd~~~~~ 264 (513)
......+..++++|+|+++++. .. ..-.+|.+....
T Consensus 94 ----------------------------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g 139 (297)
T 3g4e_A 94 ----------------------------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH 139 (297)
T ss_dssp ----------------------------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS
T ss_pred ----------------------------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC
Confidence 0001236789999999977765 22 234555554333
Q ss_pred ceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc--CCcccccccceeeccccCCCCcccccccccc
Q 010287 265 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM--RQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 342 (513)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (513)
.... +..+......++|+|++..++++.+.++.|.+||+ .++..... +.+.. +..+.+.
T Consensus 140 ~~~~--------~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~--~~~~~---------~~~~~~~ 200 (297)
T 3g4e_A 140 HVKK--------YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNR--RSVYK---------LEKEEQI 200 (297)
T ss_dssp CEEE--------EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEE--EEEEE---------CCGGGCE
T ss_pred CEEE--------EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCc--EEEEE---------CCCCCCC
Confidence 2221 12233456899999998445566677899999987 44442111 11110 1112245
Q ss_pred EEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEe-CCCCEEEEEeC
Q 010287 343 ISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS-GDGGRVATGSY 417 (513)
Q Consensus 343 v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~ 417 (513)
...++++++|.+.++... +.|.+||..+ ++.+..+..+... +++++|. |+++.|+.++.
T Consensus 201 p~g~~~d~~G~lwva~~~~~~v~~~d~~t-G~~~~~i~~p~~~---------------~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 201 PDGMCIDAEGKLWVACYNGGRVIRLDPVT-GKRLQTVKLPVDK---------------TTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEEEBTTSCEEEEEETTTEEEEECTTT-CCEEEEEECSSSB---------------EEEEEEESGGGCEEEEEEB
T ss_pred CCeeEECCCCCEEEEEcCCCEEEEEcCCC-ceEEEEEECCCCC---------------ceEEEEeCCCCCEEEEEcC
Confidence 788999999988777665 8899999885 7777777655332 4589998 88887765553
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.34 E-value=4.6e-10 Score=102.48 Aligned_cols=220 Identities=11% Similarity=0.081 Sum_probs=127.1
Q ss_pred eEEEEeccCCCEEEEE-c--CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287 235 INSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 311 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~-~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~ 311 (513)
...++|+|||++++.+ . ++.|.++|+.+.+...++ .+.+ +....|.+...+++.+.||.+.+.++
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI------~v~g------~~~~~P~g~~~~~~~~~DG~~~~v~~ 206 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML------DVPD------CYHIFPTAPDTFFMHCRDGSLAKVAF 206 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE------ECCS------EEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEE------ECCC------cceeecCCCceeEEECCCCCEEEEEC
Confidence 4468899999998877 2 689999999977644332 1111 12233544467778888999999998
Q ss_pred CC-cccccccceeeccccCCCCccccccccccE-EEEEEe-ecCCEEEEEeCCeEEEEEccCCCC--Ceeeeec--c---
Q 010287 312 RQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASI-SDIKFA-RNGRHILSRDYMTLKLWDINMDSG--PVATFQV--H--- 381 (513)
Q Consensus 312 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~i~~s-p~~~~l~~~~~~~v~iwd~~~~~~--~~~~~~~--~--- 381 (513)
.+ ++........+.... .++ ....|. ++|++++...+|.|++.|+.. .. ....+.. .
T Consensus 207 ~~~g~v~~~~~~~~~~~~------------~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~-~~~~v~~~~~~~~~~~~ 273 (386)
T 3sjl_D 207 GTEGTPEITHTEVFHPED------------EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSS-GDAKFLPAVEALTEAER 273 (386)
T ss_dssp CSSSCCEEEECCCCSCTT------------SCBCSCCEEETTTTEEEEEBTTSEEEEEECTT-SSCEECCCEESSCHHHH
T ss_pred CCCCeEEEeecceecccc------------ccccccceeEcCCCcEEEEeCCCEEEEEECCC-Ccceeecceeccccccc
Confidence 76 443211101111100 111 123564 688777766669999999874 22 2222210 0
Q ss_pred -cccccccccccccCCccceeeEEEeCCCCEEEEEeC----------CCcEEEEecCCCCccceeecCCCCceeEEEEcC
Q 010287 382 -EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY----------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 450 (513)
Q Consensus 382 -~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 450 (513)
..... .. ...++++++++.++.... .+.|.+.|+.+++.+ ..+..- .++..+.+++
T Consensus 274 ~~g~~p--------~g---~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~-~~i~vg-~~~~~lavs~ 340 (386)
T 3sjl_D 274 ADGWRP--------GG---WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL-AKFEMG-HEIDSINVSQ 340 (386)
T ss_dssp HTTEEE--------CS---SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE-EEEEEE-EEECEEEECS
T ss_pred cccccC--------CC---cceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE-EEEECC-CCcceEEECC
Confidence 00000 00 115788999998887643 257999999988443 333322 2677999999
Q ss_pred CCC-ceee-ecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCC
Q 010287 451 SRP-SRPL-GSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPS 496 (513)
Q Consensus 451 ~~~-~l~~-~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 496 (513)
+++ .|++ ...++.|.+++..... ....+......++|.+++|
T Consensus 341 D~~~~ly~tn~~~~~VsViD~~t~k----~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 341 DEKPLLYALSTGDKTLYIHDAESGE----ELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp SSSCEEEEEETTTTEEEEEETTTCC----EEEEECCCCSSCCEEEECC
T ss_pred CCCeEEEEEcCCCCeEEEEECCCCc----EEEEecCCCCCceeEECCc
Confidence 997 5544 4568888883332211 0011122344566666666
No 205
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.30 E-value=5e-10 Score=113.37 Aligned_cols=159 Identities=8% Similarity=0.026 Sum_probs=95.2
Q ss_pred cCCeEEEEeccCCCEEEEE-c----CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC---
Q 010287 232 DYHINSISNNSDGETFISA-D----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--- 303 (513)
Q Consensus 232 ~~~v~~~~~~~~~~~l~s~-~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--- 303 (513)
...+..+.|+||+++|+.. . ...|+++|+.++..... .+..+....... +++++..+++....+
T Consensus 233 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~-------~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~ 304 (693)
T 3iuj_A 233 HHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL-------TVQGDLDADVSL-VDNKGSTLYLLTNRDAPN 304 (693)
T ss_dssp CCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE-------EEECSSSSCEEE-EEEETTEEEEEECTTCTT
T ss_pred CeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE-------EEeCCCCceEEE-EeccCCEEEEEECCCCCC
Confidence 3446788999999988653 2 35899999986542222 233344444444 566664666665544
Q ss_pred CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--C--CeEEEEEccCCCCCeeeee
Q 010287 304 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y--MTLKLWDINMDSGPVATFQ 379 (513)
Q Consensus 304 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~--~~v~iwd~~~~~~~~~~~~ 379 (513)
+.|..+|+.++... ..+.+.. |...+. .|++++..|+... + ..|++|++. +.....+.
T Consensus 305 ~~l~~~d~~~~~~~--~~~~l~~------------~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~--g~~~~~l~ 366 (693)
T 3iuj_A 305 RRLVTVDAANPGPA--HWRDLIP------------ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE--GKRVREVA 366 (693)
T ss_dssp CEEEEEETTSCCGG--GCEEEEC------------CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT--SCEEEEEC
T ss_pred CEEEEEeCCCCCcc--ccEEEec------------CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC--CCeeEEee
Confidence 57888998775421 1122222 122333 8999998888643 3 378888876 44444443
Q ss_pred cccccccccccccccCCccceeeEEEeCCCCEEEEEeCC----CcEEEEecCCCC
Q 010287 380 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEGS 430 (513)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vwd~~~~~ 430 (513)
..... .+..+.++++++.|+....+ +.++.||+.++.
T Consensus 367 ~p~~~--------------~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 367 LPGLG--------------SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp CSSSS--------------EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred cCCCc--------------eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 22211 02255677888766654444 789999988763
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.28 E-value=3.5e-09 Score=99.52 Aligned_cols=268 Identities=11% Similarity=0.081 Sum_probs=155.5
Q ss_pred ccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (513)
Q Consensus 36 ~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 115 (513)
.....|+|+|+|+++++...++.|++||..++... ...... ...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~-----------------------~~~~~~-------------~~~ 174 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT-----------------------TVHPGF-------------KGG 174 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE-----------------------EEEETC-------------CBC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE-----------------------EeeccC-------------CCC
Confidence 46789999999998888888899999997655421 111111 223
Q ss_pred eeEEEeecCCCceEEEeecCC--eEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287 116 NKIRWCQSANSALYLLSTNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (513)
Q Consensus 116 ~~i~~~~~~~~~~l~s~s~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (513)
. ++|. +++..|+++..++ .|.+++...+.........
T Consensus 175 ~-ia~~--~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~-------------------------------------- 213 (409)
T 3hrp_A 175 K-PAVT--KDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQL-------------------------------------- 213 (409)
T ss_dssp B-CEEC--TTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEEC--------------------------------------
T ss_pred c-eeEe--cCCCcEEEEecCCCceEEEEEcCCCceeEEeeec--------------------------------------
Confidence 3 8884 4777888887765 7888887654321111000
Q ss_pred CCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeeccc
Q 010287 194 SNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 272 (513)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~ 272 (513)
.......+.+++++|++..|+.+ .++.|+.||..+..... +...
T Consensus 214 ----------------------------------~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~-~~~~ 258 (409)
T 3hrp_A 214 ----------------------------------GSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTL-IKQL 258 (409)
T ss_dssp ----------------------------------CTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEE-EEEC
T ss_pred ----------------------------------cchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEE-Eecc
Confidence 00012346778899954455556 68899999998554221 1000
Q ss_pred CccccccccCCe-E-EEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecccc-CCCCc--cccccccccEEEEE
Q 010287 273 KPANMEDLTEVI-T-SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE-APGTR--SFFTEIIASISDIK 347 (513)
Q Consensus 273 ~~~~~~~~~~~i-~-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~v~~i~ 347 (513)
...++...- . .++|+|++..++++-..++.|+.|+.... . ..+-+.. ..... ......-.....++
T Consensus 259 ---~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~-----~~~~g~~~~~g~~dg~~~~~~~~~P~gia 329 (409)
T 3hrp_A 259 ---ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-C-----EWFCGSATQKTVQDGLREEALFAQPNGMT 329 (409)
T ss_dssp ---CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-E-----EEEEECTTCCSCBCEEGGGCBCSSEEEEE
T ss_pred ---cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-E-----EEEEeCCCCCCcCCCcccccEeCCCeEEE
Confidence 011112211 3 99999964377887778899999986532 1 1111111 00000 00001123578999
Q ss_pred EeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEe
Q 010287 348 FARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 425 (513)
Q Consensus 348 ~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 425 (513)
++|+|.++++-. . +.|+.|++.. +. +..+.++...............+.....+++++++.++++-..++.|+.++
T Consensus 330 ~d~dG~lyvad~~~~~~I~~~~~~~-G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~ 407 (409)
T 3hrp_A 330 VDEDGNFYIVDGFKGYCLRKLDILD-GY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA 407 (409)
T ss_dssp ECTTCCEEEEETTTTCEEEEEETTT-TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred EeCCCCEEEEeCCCCCEEEEEECCC-CE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence 999999777765 5 8999999763 43 444444311100000000001112234899999988888888888888876
Q ss_pred c
Q 010287 426 C 426 (513)
Q Consensus 426 ~ 426 (513)
+
T Consensus 408 ~ 408 (409)
T 3hrp_A 408 V 408 (409)
T ss_dssp E
T ss_pred e
Confidence 5
No 207
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.28 E-value=2.1e-09 Score=96.65 Aligned_cols=188 Identities=9% Similarity=0.094 Sum_probs=116.1
Q ss_pred CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC---------
Q 010287 233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--------- 303 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------- 303 (513)
..+.+++++++++++++ .++.|.+||.+++... .+... ........+..++++|++ +++++....
T Consensus 54 ~~~~~i~~~~dG~l~v~-~~~~l~~~d~~~g~~~-~~~~~---~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~ 127 (297)
T 3g4e_A 54 APVSSVALRQSGGYVAT-IGTKFCALNWKEQSAV-VLATV---DNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLER 127 (297)
T ss_dssp SCEEEEEEBTTSSEEEE-ETTEEEEEETTTTEEE-EEEEC---CTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCT
T ss_pred CceEEEEECCCCCEEEE-ECCeEEEEECCCCcEE-EEEec---CCCCCCCCCCCEEECCCC-CEEEecCCcccccccccC
Confidence 34788999999995554 4678999998865422 11110 000113457899999998 666544322
Q ss_pred CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEcc-CCCCCe--eee
Q 010287 304 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDIN-MDSGPV--ATF 378 (513)
Q Consensus 304 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~-~~~~~~--~~~ 378 (513)
....+|.+...... ..... .......++|+|+++.|+.++ . +.|.+|++. ..+... +.+
T Consensus 128 ~~~~l~~~d~~g~~---~~~~~-------------~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~ 191 (297)
T 3g4e_A 128 HQGALYSLFPDHHV---KKYFD-------------QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV 191 (297)
T ss_dssp TCEEEEEECTTSCE---EEEEE-------------EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE
T ss_pred CCcEEEEEECCCCE---EEEee-------------ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE
Confidence 23455554322111 11111 113467899999999776654 3 899999984 223321 111
Q ss_pred ---ecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEc-CCCCc
Q 010287 379 ---QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQT-PSRPS 454 (513)
Q Consensus 379 ---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~ 454 (513)
...... ...++++++|++.++...++.|..||..++ +....+..+...+.+++|. |+++.
T Consensus 192 ~~~~~~~~~---------------p~g~~~d~~G~lwva~~~~~~v~~~d~~tG-~~~~~i~~p~~~~t~~~f~g~d~~~ 255 (297)
T 3g4e_A 192 YKLEKEEQI---------------PDGMCIDAEGKLWVACYNGGRVIRLDPVTG-KRLQTVKLPVDKTTSCCFGGKNYSE 255 (297)
T ss_dssp EECCGGGCE---------------EEEEEEBTTSCEEEEEETTTEEEEECTTTC-CEEEEEECSSSBEEEEEEESGGGCE
T ss_pred EECCCCCCC---------------CCeeEECCCCCEEEEEcCCCEEEEEcCCCc-eEEEEEECCCCCceEEEEeCCCCCE
Confidence 111111 237899999998888778889999999877 4446666666678899998 78776
Q ss_pred eeee
Q 010287 455 RPLG 458 (513)
Q Consensus 455 l~~~ 458 (513)
|...
T Consensus 256 L~vt 259 (297)
T 3g4e_A 256 MYVT 259 (297)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
No 208
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.27 E-value=2.3e-08 Score=92.61 Aligned_cols=257 Identities=7% Similarity=0.006 Sum_probs=146.4
Q ss_pred eEEEeecCCCceEEEee----------cCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287 117 KIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (513)
Q Consensus 117 ~i~~~~~~~~~~l~s~s----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 186 (513)
.++++| |++.++++. .++.|.+||..+.+............ .. ....+..+.++|||+.+
T Consensus 70 ~i~~sp--Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~-~~-------~g~~p~~~~~spDG~~l 139 (373)
T 2mad_H 70 NPVAAH--SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR-FD-------VGPYSWMNANTPNNADL 139 (373)
T ss_pred CeEECC--CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc-cc-------cCCCccceEECCCCCEE
Confidence 788855 888888875 36789999998876554433220000 00 00123367899999987
Q ss_pred ccccCCCCCCCCcCCC--CCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCE-EEEE-cCCeEEEEEcCC
Q 010287 187 ERNFGCASNDSSFPPG--GVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET-FISA-DDLRINLWNLEI 262 (513)
Q Consensus 187 ~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~-~d~~i~vwd~~~ 262 (513)
+..+ ..+.|.++| ...+.... .. ... .++.+.|+++. +++. .||.+.++|. +
T Consensus 140 ------------~v~n~~~~~~v~viD-~t~~~~~~-----~i--~~~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~ 195 (373)
T 2mad_H 140 ------------LFFQFAAGPAVGLVV-QGGSSDDQ-----LL--SSP---TCYHIHPGAPSTFYLLCAQGGLAKTDH-A 195 (373)
T ss_pred ------------EEEecCCCCeEEEEE-CCCCEEeE-----Ec--CCC---ceEEEEeCCCceEEEEcCCCCEEEEEC-C
Confidence 3333 246788888 65443211 00 001 12445565543 3333 6999999999 6
Q ss_pred CcceeeecccCccccccccCC-eEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccc
Q 010287 263 SNQSFNIVDVKPANMEDLTEV-ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 341 (513)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (513)
++..... ...+ .+ ....+ .....+.+++..+++. +..+.+.+.|+....... ...++........ ..-...
T Consensus 196 g~~~~~~-~~~~-~~-~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~vid~~~~~~~v--~~~~~~~~~~~~~--~~~~p~ 267 (373)
T 2mad_H 196 GGAAGAG-LVGA-ML-TAAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAAGATN--KAPIDALSGGRKA--DTWRPG 267 (373)
T ss_pred CcEEEEE-eccc-cc-cCCcceeecceeEecCCEEEEE-cCCceEEEEeccCCcceE--eeeeeecCCcccc--cceecC
Confidence 6543211 0000 01 11112 2335566766344444 478899999987543210 1122111000000 000012
Q ss_pred cEEEEEEeecCCEEEEEe-----------CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC
Q 010287 342 SISDIKFARNGRHILSRD-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 410 (513)
Q Consensus 342 ~v~~i~~sp~~~~l~~~~-----------~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 410 (513)
....+.++|++..++++. .+.|.++|..+ .+.+..+...... ..+.|+|||+
T Consensus 268 g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~g~~p----------------~~i~~s~Dg~ 330 (373)
T 2mad_H 268 GWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISLGHDV----------------DAISVAQDGG 330 (373)
T ss_pred ceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEEECCCCc----------------CeEEECCCCC
Confidence 345578999988777642 15799999986 7777777544322 2899999999
Q ss_pred -EEEEEe-CCCcEEEEecCCCCcc
Q 010287 411 -RVATGS-YSNLFRVFGCSEGSAE 432 (513)
Q Consensus 411 -~l~~~~-~dg~i~vwd~~~~~~~ 432 (513)
.++++. .++.|.+||+.+++..
T Consensus 331 ~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 331 PDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred eEEEEEcCCCCeEEEEECCCCCEE
Confidence 777777 5899999999988433
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.26 E-value=1.9e-10 Score=105.53 Aligned_cols=189 Identities=12% Similarity=0.119 Sum_probs=123.9
Q ss_pred ccEEEEEEcCCCCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (513)
Q Consensus 36 ~~V~~v~~sp~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 115 (513)
..++.+++++...++++|+.+ .+++|+++..... +..-..++++.....+.. |
T Consensus 38 ~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~-------------------------~~~~~~~~~~~~~~~lp~-V 90 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDH-------------------------ITSDSTPLTFKWEKEIPD-V 90 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHH-------------------------HHSSSCCCCCSEEEECTT-E
T ss_pred ccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhh-------------------------hccccccccceEEeeCCC-e
Confidence 479999999999999999988 4677997543310 000000011122223336 9
Q ss_pred eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCC
Q 010287 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (513)
Q Consensus 116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 195 (513)
+.++| ++..|+++ .++.|++||+.+......
T Consensus 91 ~~l~f----d~~~L~v~-~~~~l~v~dv~sl~~~~~-------------------------------------------- 121 (388)
T 1xip_A 91 IFVCF----HGDQVLVS-TRNALYSLDLEELSEFRT-------------------------------------------- 121 (388)
T ss_dssp EEEEE----ETTEEEEE-ESSEEEEEESSSTTCEEE--------------------------------------------
T ss_pred eEEEE----CCCEEEEE-cCCcEEEEEchhhhccCc--------------------------------------------
Confidence 99999 55688887 889999999986532111
Q ss_pred CCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCc
Q 010287 196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 274 (513)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~ 274 (513)
...|...+.++.+.+.. ++++ .||.|.+||+.++...
T Consensus 122 --------------------------------~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~-------- 159 (388)
T 1xip_A 122 --------------------------------VTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTK-------- 159 (388)
T ss_dssp --------------------------------EEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEE--------
T ss_pred --------------------------------cceeecceeeEEecCCC--EEEEECCCCEEEEEccCCccc--------
Confidence 11223345566665542 6666 8999999999855432
Q ss_pred cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccc---cccccEEEEEEeec
Q 010287 275 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT---EIIASISDIKFARN 351 (513)
Q Consensus 275 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~i~~sp~ 351 (513)
.+...|+|++|+|+| ++.|..||.+++|+...+.... .+.+..+. .+. +|...|.+|.|.++
T Consensus 160 ----~~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~--k~~I~~Pp------~~~~~~~~~~~V~sI~wl~~ 224 (388)
T 1xip_A 160 ----QLAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEK--QFEFSLPS------ELEELPVEEYSPLSVTILSP 224 (388)
T ss_dssp ----EEEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEEE--EEEECCCH------HHHTSCTTTSEEEEEEESSS
T ss_pred ----cccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCccccc--cceecCCc------ccccccCCCeeEEEEEEecC
Confidence 135679999999997 5778999999999887655210 01121110 011 25578999999999
Q ss_pred CCEEEE
Q 010287 352 GRHILS 357 (513)
Q Consensus 352 ~~~l~~ 357 (513)
+.++++
T Consensus 225 ~~flv~ 230 (388)
T 1xip_A 225 QDFLAV 230 (388)
T ss_dssp SEEEEE
T ss_pred CeEEEE
Confidence 999987
No 210
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.26 E-value=8.4e-09 Score=94.05 Aligned_cols=229 Identities=11% Similarity=0.042 Sum_probs=139.0
Q ss_pred cEEEEEEcCC-CCEEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccccc
Q 010287 37 IISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (513)
Q Consensus 37 ~V~~v~~sp~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 115 (513)
......|+|+ +.+++++..++.|..|+..+++. ..+. .. ..+
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~------------------------~~~~-~~------------~~v 92 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK------------------------TVHA-LP------------FMG 92 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE------------------------EEEE-CS------------SCE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE------------------------EEEE-CC------------Ccc
Confidence 3567889997 45666777788999999765432 0111 11 458
Q ss_pred eeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCC
Q 010287 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (513)
Q Consensus 116 ~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 195 (513)
.++.|.| ++.++++ +.+ .|.+||..+++.........
T Consensus 93 ~~i~~~~--dg~l~v~-~~~-gl~~~d~~~g~~~~~~~~~~--------------------------------------- 129 (326)
T 2ghs_A 93 SALAKIS--DSKQLIA-SDD-GLFLRDTATGVLTLHAELES--------------------------------------- 129 (326)
T ss_dssp EEEEEEE--TTEEEEE-ETT-EEEEEETTTCCEEEEECSST---------------------------------------
T ss_pred eEEEEeC--CCeEEEE-ECC-CEEEEECCCCcEEEEeeCCC---------------------------------------
Confidence 8999966 6655554 444 48999988776543211100
Q ss_pred CCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-cC------CeEEEEEcCCCcceee
Q 010287 196 DSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD------LRINLWNLEISNQSFN 268 (513)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d------~~i~vwd~~~~~~~~~ 268 (513)
......+.+++++++|+++++. .+ +.|..++ + .....
T Consensus 130 ---------------------------------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~-g~~~~ 173 (326)
T 2ghs_A 130 ---------------------------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--K-GKVTK 173 (326)
T ss_dssp ---------------------------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--T-TEEEE
T ss_pred ---------------------------------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--C-CcEEE
Confidence 0001237789999999977765 22 3455555 2 22211
Q ss_pred ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC--Cc-ccccccceeeccccCCCCccccccccccEEE
Q 010287 269 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR--QS-ALCDTHSKLFEEQEAPGTRSFFTEIIASISD 345 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 345 (513)
+..+......++|+|++..++++.+.++.|.+||+. ++ ..... ..+.. +.........
T Consensus 174 --------~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~--~~~~~---------~~~~~~~p~g 234 (326)
T 2ghs_A 174 --------LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKA--EVFID---------STGIKGGMDG 234 (326)
T ss_dssp --------EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCC--EEEEE---------CTTSSSEEEE
T ss_pred --------eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCc--eEEEE---------CCCCCCCCCe
Confidence 112234567899999983344555567899999986 44 32111 11110 0011134678
Q ss_pred EEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEe-CCCCEEEEEeC
Q 010287 346 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS-GDGGRVATGSY 417 (513)
Q Consensus 346 i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~ 417 (513)
++++++|.+.++... +.|.+||.. ++.+..+..+... +++++|+ ++++.|+.++.
T Consensus 235 i~~d~~G~lwva~~~~~~v~~~d~~--g~~~~~i~~~~~~---------------~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 235 SVCDAEGHIWNARWGEGAVDRYDTD--GNHIARYEVPGKQ---------------TTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEECTTSCEEEEEETTTEEEEECTT--CCEEEEEECSCSB---------------EEEEEEESTTSCEEEEEEB
T ss_pred eEECCCCCEEEEEeCCCEEEEECCC--CCEEEEEECCCCC---------------cEEEEEecCCCCEEEEEec
Confidence 999999987777654 889999974 6666666544322 4589998 88887765543
No 211
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.25 E-value=1.4e-09 Score=100.14 Aligned_cols=271 Identities=6% Similarity=-0.019 Sum_probs=158.3
Q ss_pred ccEEEEEEcCCCCEEEeec--CCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287 36 DIISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (513)
Q Consensus 36 ~~V~~v~~sp~g~~latg~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (513)
..+..++++|+|+++++.. .++.++||.+.+++. ..+ |... ....+|- .
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-----~~~----------p~~~--~~~~~~~------------~ 67 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-----IPF----------PPQS--GNAIITF------------D 67 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-----EES----------CCCC--SSCCCCC------------S
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-----ecC----------CCcc--cCcccce------------e
Confidence 5889999999999988864 234467777653321 000 0000 0111222 5
Q ss_pred cceeEEEeecCCCceEEEeec-----CCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcccc
Q 010287 114 KINKIRWCQSANSALYLLSTN-----DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (513)
Q Consensus 114 ~i~~i~~~~~~~~~~l~s~s~-----d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 188 (513)
.+..+++ ++++.++++-.. ++.|.+||+.+++......+....
T Consensus 68 ~p~gv~~--d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~------------------------------ 115 (343)
T 2qe8_A 68 TVLGIKS--DGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI------------------------------ 115 (343)
T ss_dssp CEEEEEE--CSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT------------------------------
T ss_pred EeeEEEE--cCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh------------------------------
Confidence 6899999 446665555433 578999999988755443221100
Q ss_pred ccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE-----cCCeEEEEEcCCC
Q 010287 189 NFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-----DDLRINLWNLEIS 263 (513)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-----~d~~i~vwd~~~~ 263 (513)
..+...+..+++++++..++.+ .++.|.+||+.++
T Consensus 116 ----------------------------------------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g 155 (343)
T 2qe8_A 116 ----------------------------------------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG 155 (343)
T ss_dssp ----------------------------------------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC
T ss_pred ----------------------------------------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC
Confidence 0111235778898765454433 3689999999865
Q ss_pred cceeeecccCccccccccCCeE-EEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccccccccc
Q 010287 264 NQSFNIVDVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 342 (513)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (513)
+. ..+ +.+|..... ...+.+++ ..+.+.+.++.++.|. ..
T Consensus 156 ~~-~r~-------~~~~~~~~~~~~~~~~~g-~~~~~~~~~g~~~~~~------------------------------~~ 196 (343)
T 2qe8_A 156 LA-ARV-------LQGYPGIAPEDIDLVIDG-VPVQIGQPDGTVIRPH------------------------------LG 196 (343)
T ss_dssp CE-EEE-------CTTCTTTSCCSCCCEETT-EECBEECTTSCEECCC------------------------------CC
T ss_pred CE-EEE-------ecCCCcccccccceeECC-EEEEeccCCCceecee------------------------------cc
Confidence 43 222 122211000 13344566 6677777777776553 12
Q ss_pred EEEEEEeecCCEEEEEeC--CeEEEEEccC--CCCC-----ee--eeecccccccccccccccCCccceeeEEEeCCCCE
Q 010287 343 ISDIKFARNGRHILSRDY--MTLKLWDINM--DSGP-----VA--TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 411 (513)
Q Consensus 343 v~~i~~sp~~~~l~~~~~--~~v~iwd~~~--~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 411 (513)
+..|+|+|+++.|+.++. ..+..++... .+.. .. ...++... ...++++++|.+
T Consensus 197 ~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~---------------pdgia~d~~G~l 261 (343)
T 2qe8_A 197 VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPI---------------CDGISIDKDHNI 261 (343)
T ss_dssp EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCS---------------CSCEEECTTCCE
T ss_pred cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCC---------------CceEEECCCCCE
Confidence 577999999998888764 4555555421 0110 00 00011110 126899999999
Q ss_pred EEEEeCCCcEEEEecCCCCccceeecC-CCCceeEEEEcCCCCceeeecCCC
Q 010287 412 VATGSYSNLFRVFGCSEGSAESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSG 462 (513)
Q Consensus 412 l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~ 462 (513)
+++...++.|.+||..++. ....... .......+++.+++.++++.+..+
T Consensus 262 ~va~~~~~~V~~~d~~~G~-~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 262 YVGDLAHSAIGVITSADRA-YKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp EEEEGGGTEEEEEETTTTE-EEEEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred EEEccCCCeEEEEECCCCC-EEEEEECCceecCCeeEECCCCcEEEEeCccc
Confidence 9998889999999985452 2222221 244577899999988777765443
No 212
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.25 E-value=2.2e-09 Score=96.96 Aligned_cols=234 Identities=12% Similarity=0.037 Sum_probs=144.0
Q ss_pred cccccccEEEEEEcCCCC-EEEeecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 31 EVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 31 ~~~h~~~V~~v~~sp~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
............|+|+|+ +++++..++.|..|+.. ++. ..+..+.
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~------------------------~~~~~~~--------- 85 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV------------------------DVLLDAT--------- 85 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE------------------------EEEEESC---------
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE------------------------EEEeCCC---------
Confidence 334556778899999998 66777788999999862 221 1122222
Q ss_pred cccccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (513)
..+..+++ ++++.++++...++.|.+|+.. ++.........
T Consensus 86 ---~~~~gl~~--d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~--------------------------------- 126 (305)
T 3dr2_A 86 ---AFTNGNAV--DAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYA--------------------------------- 126 (305)
T ss_dssp ---SCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEECEET---------------------------------
T ss_pred ---CccceeeE--CCCCCEEEEECCCCEEEEECCC-CCEEEEEeccC---------------------------------
Confidence 45788999 4577666555556789999876 44322211000
Q ss_pred cCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEE----Ec--------------
Q 010287 190 FGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS----AD-------------- 251 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s----~~-------------- 251 (513)
......+..++++++|+++++ |.
T Consensus 127 ---------------------------------------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~ 167 (305)
T 3dr2_A 127 ---------------------------------------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELA 167 (305)
T ss_dssp ---------------------------------------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSS
T ss_pred ---------------------------------------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccC
Confidence 000123567888899888875 31
Q ss_pred CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC------CcEEEEEcCCcccccccceeec
Q 010287 252 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK------GSIRLIDMRQSALCDTHSKLFE 325 (513)
Q Consensus 252 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~ 325 (513)
.+.|..+|..+++... +. .......++|+|++ +.|+.+... +.|.+||+..+.... ...+.
T Consensus 168 ~~~v~~~d~~~g~~~~---------~~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~--~~~~~ 234 (305)
T 3dr2_A 168 HHSVYRLPPDGSPLQR---------MA-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHD--RRHFA 234 (305)
T ss_dssp CEEEEEECSSSCCCEE---------EE-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEE--EEEEE
T ss_pred CCeEEEEcCCCCcEEE---------Ee-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccC--CeEEE
Confidence 2456777765443221 11 23456789999999 666655554 789999986543110 11111
Q ss_pred cccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEE
Q 010287 326 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 405 (513)
Q Consensus 326 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (513)
.. ..+....++++++|.+.++. .+.|.+|+.. ++.+..+..+.. +..++|
T Consensus 235 ~~-----------~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~--g~~~~~~~~~~~----------------~~~~~f 284 (305)
T 3dr2_A 235 SV-----------PDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD--GQLLGHIPTPGT----------------ASNCTF 284 (305)
T ss_dssp CC-----------SSSCCCSEEECTTSCEEECC-SSEEEEECTT--SCEEEEEECSSC----------------CCEEEE
T ss_pred EC-----------CCCCCCeEEECCCCCEEEec-CCcEEEECCC--CCEEEEEECCCc----------------eeEEEE
Confidence 10 01334568899999955554 4459999975 666666654432 237899
Q ss_pred eCCCCEEEEEeCCC
Q 010287 406 SGDGGRVATGSYSN 419 (513)
Q Consensus 406 s~~~~~l~~~~~dg 419 (513)
+|+++.|..++.++
T Consensus 285 ~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 285 DQAQQRLFITGGPC 298 (305)
T ss_dssp CTTSCEEEEEETTE
T ss_pred eCCCCEEEEEcCCe
Confidence 99999888887764
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.24 E-value=1.1e-08 Score=96.06 Aligned_cols=206 Identities=9% Similarity=0.019 Sum_probs=122.1
Q ss_pred EEeccCCCEEEEE-cCC--eEEEEEcCCCcceeeecccCcccc-ccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC
Q 010287 238 ISNNSDGETFISA-DDL--RINLWNLEISNQSFNIVDVKPANM-EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 313 (513)
Q Consensus 238 ~~~~~~~~~l~s~-~d~--~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 313 (513)
++|+++++.|+++ .++ .|.+++.........+- .+ ......+.+++++|++..+++ +..++.|..||..+
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g-----~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~ 249 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIG-----QLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKT 249 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEE-----ECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTT
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEee-----eccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCC
Confidence 8899999988887 434 78888887544321110 01 113456788999995425444 77789999999876
Q ss_pred cccccccceeeccccCCCCcccccccccc--EEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeecccccccccc
Q 010287 314 SALCDTHSKLFEEQEAPGTRSFFTEIIAS--ISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLC 389 (513)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
+.. ..+..... .+.... ...++|+|++..|+.++ . +.|+.|+.. +. +..+.++........
T Consensus 250 ~~~-----~~~~~~~~-------~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~--g~-~~~~~g~~~~~g~~d 314 (409)
T 3hrp_A 250 QEV-----TLIKQLEL-------SGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD--GE-CEWFCGSATQKTVQD 314 (409)
T ss_dssp CCE-----EEEEECCC-------CSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT--CC-EEEEEECTTCCSCBC
T ss_pred CCE-----EEEecccc-------cCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC--CC-EEEEEeCCCCCCcCC
Confidence 542 11211000 000011 23899999655555444 4 899999876 33 333333320000000
Q ss_pred cccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCCCccceeecCC---------------CCceeEEEEcCCCC
Q 010287 390 DLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEAS---------------KNPMRRQVQTPSRP 453 (513)
Q Consensus 390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~ 453 (513)
.......+.....++++|+|+++++-+ .++.|+.|++.++. . .++.++ ......+++.+++.
T Consensus 315 g~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~-v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~ 392 (409)
T 3hrp_A 315 GLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY-V-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG 392 (409)
T ss_dssp EEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE-E-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE
T ss_pred CcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-E-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC
Confidence 000000111234899999999888877 88999999977662 2 333332 24567899999988
Q ss_pred ceeeecCCCeEEE
Q 010287 454 SRPLGSLSGVVRR 466 (513)
Q Consensus 454 ~l~~~~~d~~i~~ 466 (513)
++++...++.|+.
T Consensus 393 lyVad~~n~~Ir~ 405 (409)
T 3hrp_A 393 YWIAEAWGKAIRK 405 (409)
T ss_dssp EEEEESTTCEEEE
T ss_pred EEEEECCCCeEEE
Confidence 8887777777765
No 214
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.24 E-value=4e-09 Score=95.31 Aligned_cols=231 Identities=10% Similarity=0.030 Sum_probs=141.2
Q ss_pred cCCeEEEEeccCCCE-EEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 010287 232 DYHINSISNNSDGET-FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 309 (513)
Q Consensus 232 ~~~v~~~~~~~~~~~-l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vw 309 (513)
........|+++++. +++. .++.|..|+.. ++. . .+..+...+..+++++++ +++++...++.|.+|
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~--~-------~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV--D-------VLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRS 112 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE--E-------EEEESCSCEEEEEECTTS-CEEEEETTTTEEEEE
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE--E-------EEeCCCCccceeeECCCC-CEEEEECCCCEEEEE
Confidence 344678999999984 4555 68999999884 332 1 122345668999999998 777665566889999
Q ss_pred EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEE----Ee--------------CCeEEEEEccCC
Q 010287 310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS----RD--------------YMTLKLWDINMD 371 (513)
Q Consensus 310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~----~~--------------~~~v~iwd~~~~ 371 (513)
|.. +.. ..+..... ......+..++++|+|.+.++ |. .+.|..||...
T Consensus 113 ~~~-g~~-----~~~~~~~~-------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~- 178 (305)
T 3dr2_A 113 DAD-GQA-----HLLVGRYA-------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG- 178 (305)
T ss_dssp CTT-SCE-----EEEECEET-------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS-
T ss_pred CCC-CCE-----EEEEeccC-------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC-
Confidence 975 432 11111000 001134678999999998886 32 14566666543
Q ss_pred CCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC------CcEEEEecCCCCccc--eee-cCCCCc
Q 010287 372 SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS------NLFRVFGCSEGSAES--TTL-EASKNP 442 (513)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~~--~~~-~~~~~~ 442 (513)
++... +. .... ...++|+||++.|+.+... +.|++|++..+. .. ..+ ......
T Consensus 179 g~~~~-~~-~~~~---------------p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~ 240 (305)
T 3dr2_A 179 SPLQR-MA-DLDH---------------PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGL 240 (305)
T ss_dssp CCCEE-EE-EESS---------------EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSC
T ss_pred CcEEE-Ee-cCCC---------------CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCC
Confidence 33322 22 1111 1378999999988777654 789999987542 11 111 112233
Q ss_pred eeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287 443 MRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 443 v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 512 (513)
...+++.++|++.++. .++ |.++..... .. ..+.....+..++|+|+++.|.+++.++++.+.
T Consensus 241 pdgi~~d~~G~lwv~~-~~g-v~~~~~~g~----~~-~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 241 PDGFCVDRGGWLWSSS-GTG-VCVFDSDGQ----LL-GHIPTPGTASNCTFDQAQQRLFITGGPCLWMLP 303 (305)
T ss_dssp CCSEEECTTSCEEECC-SSE-EEEECTTSC----EE-EEEECSSCCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred CCeEEECCCCCEEEec-CCc-EEEECCCCC----EE-EEEECCCceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence 4578899999955544 555 444211100 00 111123358999999999999988888887664
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.22 E-value=3.2e-10 Score=103.99 Aligned_cols=179 Identities=9% Similarity=0.118 Sum_probs=121.0
Q ss_pred CeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceee--ecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287 234 HINSISNNSDGETFISADDLRINLWNLEISNQSFN--IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 311 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~ 311 (513)
.+..+++++...++++|+...+++|++........ -.+..+.....+.. |+.++| ++ ++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~-~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HG-DQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ET-TEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CC-CEEEEE-cCCcEEEEEc
Confidence 58889999999999998655777898764331100 00011111223556 999999 76 788887 8899999999
Q ss_pred CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEE-eCCeEEEEEccCCCCCeeeeeccccccccccc
Q 010287 312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCD 390 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 390 (513)
++..... .. ..|...+.++.+.+.. ++++ ++|.|.+||+.. +.... +..
T Consensus 114 ~sl~~~~----~~------------~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~-~~~~~----~~~------- 163 (388)
T 1xip_A 114 EELSEFR----TV------------TSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRT-KSTKQ----LAQ------- 163 (388)
T ss_dssp SSTTCEE----EE------------EECSSCEEEEEECSSE--EEEEETTSEEEEEETTT-CCEEE----EEE-------
T ss_pred hhhhccC----cc------------ceeecceeeEEecCCC--EEEEECCCCEEEEEccC-Ccccc----ccC-------
Confidence 8754211 11 1222457777666542 5555 459999999985 44332 111
Q ss_pred ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc-ceee------c---CCCCceeEEEEcCCCCceee
Q 010287 391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-STTL------E---ASKNPMRRQVQTPSRPSRPL 457 (513)
Q Consensus 391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~------~---~~~~~v~~~~~~~~~~~l~~ 457 (513)
.|.+++|||+| ++.|..||.+++|+...+... ..++ . +|...|.++.|.+++.++++
T Consensus 164 --------~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 164 --------NVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp --------SEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred --------CceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 15699999999 678899999999988866321 2334 2 36788999999999998876
No 216
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.22 E-value=1.1e-09 Score=100.10 Aligned_cols=264 Identities=11% Similarity=0.092 Sum_probs=145.0
Q ss_pred EEEEcCCCCEEEeec----------CCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEecccc-CCCCccccccc
Q 010287 40 AIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKS 108 (513)
Q Consensus 40 ~v~~sp~g~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~ 108 (513)
.+++||||+++++++ .++.|.+||..+.+.+ ..+. +... .
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~-----------------------~~I~v~~g~------r 132 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT-----------------------ADIELPDAP------R 132 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE-----------------------EEEEETTCC------C
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEE-----------------------EEEECCCcc------c
Confidence 399999999887765 3568999998776532 1110 0000 0
Q ss_pred ccccccceeEEEeecCCCceEEEeec--CCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287 109 LEIEEKINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (513)
Q Consensus 109 ~~~~~~i~~i~~~~~~~~~~l~s~s~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 186 (513)
......-..+.| ++|+++++++.. ++.|.++|+.+++............ .. +.....-.+.++||+.+
T Consensus 133 ~~~g~~P~~~a~--spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~-~~-------P~g~~~~~~~~~DG~~~ 202 (386)
T 3sjl_D 133 FLVGTYPWMTSL--TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH-IF-------PTAPDTFFMHCRDGSLA 202 (386)
T ss_dssp CCBSCCGGGEEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE-EE-------EEETTEEEEEETTSCEE
T ss_pred cccCCCCceEEE--cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcce-ee-------cCCCceeEEECCCCCEE
Confidence 000023567888 558888888753 6899999999998776654321100 00 00000012344555433
Q ss_pred ccccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCCe-EEEEec-cCCCEEEEEcCCeEEEEEcCCCc
Q 010287 187 ERNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHI-NSISNN-SDGETFISADDLRINLWNLEISN 264 (513)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~~-~~~~~l~s~~d~~i~vwd~~~~~ 264 (513)
+.++........ ... .........+ ....|. ++|++++.+.+|+|.+.|+....
T Consensus 203 ----------------------~v~~~~~g~v~~-~~~-~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~ 258 (386)
T 3sjl_D 203 ----------------------KVAFGTEGTPEI-THT-EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGD 258 (386)
T ss_dssp ----------------------EEECCSSSCCEE-EEC-CCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSS
T ss_pred ----------------------EEECCCCCeEEE-eec-ceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCc
Confidence 333322111000 000 0000011111 123553 67877777778999999997544
Q ss_pred ce-eeeccc-Cc--cccccccCCeEEEEEeCCCCeEEEEEeC---------CCcEEEEEcCCcccccccceeeccccCCC
Q 010287 265 QS-FNIVDV-KP--ANMEDLTEVITSAEFHPTHCNMLAYSSS---------KGSIRLIDMRQSALCDTHSKLFEEQEAPG 331 (513)
Q Consensus 265 ~~-~~~~~~-~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 331 (513)
.. ...+.+ .. ............+.++|++..++++... ...|.++|+.+++. ++.+...
T Consensus 259 ~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv----~~~i~vg---- 330 (386)
T 3sjl_D 259 AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER----LAKFEMG---- 330 (386)
T ss_dssp CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE----EEEEEEE----
T ss_pred ceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE----EEEEECC----
Confidence 21 111100 00 0000112233457779988444444321 25799999999876 3333332
Q ss_pred CccccccccccEEEEEEeecCC-EEEEEe--CCeEEEEEccCCCCCeeeeeccccc
Q 010287 332 TRSFFTEIIASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATFQVHEHL 384 (513)
Q Consensus 332 ~~~~~~~~~~~v~~i~~sp~~~-~l~~~~--~~~v~iwd~~~~~~~~~~~~~~~~~ 384 (513)
..+.+|.++||++ +|++.. ++.|.++|..+ ++.+.++......
T Consensus 331 ---------~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t-~k~~~~i~~~~~p 376 (386)
T 3sjl_D 331 ---------HEIDSINVSQDEKPLLYALSTGDKTLYIHDAES-GEELRSVNQLGHG 376 (386)
T ss_dssp ---------EEECEEEECSSSSCEEEEEETTTTEEEEEETTT-CCEEEEECCCCSS
T ss_pred ---------CCcceEEECCCCCeEEEEEcCCCCeEEEEECCC-CcEEEEecCCCCC
Confidence 3578999999997 666654 39999999997 8888888665543
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.20 E-value=1.3e-08 Score=92.88 Aligned_cols=186 Identities=12% Similarity=0.075 Sum_probs=112.4
Q ss_pred CeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC------CCcEE
Q 010287 234 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS------KGSIR 307 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~i~ 307 (513)
.+.+++++++++++++..+ .|.+||..++... .+.... .......+.++.++|++ +++++... .+.|.
T Consensus 91 ~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~-~~~~~~---~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~ 164 (326)
T 2ghs_A 91 MGSALAKISDSKQLIASDD-GLFLRDTATGVLT-LHAELE---SDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIY 164 (326)
T ss_dssp CEEEEEEEETTEEEEEETT-EEEEEETTTCCEE-EEECSS---TTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEE
T ss_pred cceEEEEeCCCeEEEEECC-CEEEEECCCCcEE-EEeeCC---CCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEE
Confidence 4788999999988776644 4999998765432 111100 00112458899999998 66654432 23444
Q ss_pred EEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEcc-CCC-CCe--eeeecc
Q 010287 308 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDIN-MDS-GPV--ATFQVH 381 (513)
Q Consensus 308 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~-~~~-~~~--~~~~~~ 381 (513)
.++ +++. ..+.. .......++|+|+++.++.++ . +.|.+||+. ..+ ... ..+...
T Consensus 165 ~~~--~g~~-----~~~~~------------~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~ 225 (326)
T 2ghs_A 165 HVA--KGKV-----TKLFA------------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS 225 (326)
T ss_dssp EEE--TTEE-----EEEEE------------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC
T ss_pred EEe--CCcE-----EEeeC------------CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEEC
Confidence 444 3332 11111 113467899999998776654 3 899999985 113 211 111100
Q ss_pred cccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEc-CCCCceeee
Q 010287 382 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQT-PSRPSRPLG 458 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~ 458 (513)
.... .....++++++|++.++...++.|.+|+.. + .....+..+...+.+++|. ++++.|..+
T Consensus 226 ~~~~------------~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g-~~~~~i~~~~~~~~~~af~g~d~~~L~vt 289 (326)
T 2ghs_A 226 TGIK------------GGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G-NHIARYEVPGKQTTCPAFIGPDASRLLVT 289 (326)
T ss_dssp TTSS------------SEEEEEEECTTSCEEEEEETTTEEEEECTT-C-CEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred CCCC------------CCCCeeEECCCCCEEEEEeCCCEEEEECCC-C-CEEEEEECCCCCcEEEEEecCCCCEEEEE
Confidence 0000 002378899999887777677889999984 4 3445566666678899998 887766443
No 218
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.18 E-value=4.3e-08 Score=90.75 Aligned_cols=293 Identities=7% Similarity=-0.098 Sum_probs=161.9
Q ss_pred cCCCceEEEeec--CC---eEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCC
Q 010287 123 SANSALYLLSTN--DK---TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (513)
Q Consensus 123 ~~~~~~l~s~s~--d~---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 197 (513)
.+++..++++.. .. +|.++|..+++........ ..+ .++++|||+.+.+...... -
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g----------------~~p-~i~~spDg~~lyv~n~~~~--~ 89 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG----------------FLP-NPVAAHSGSEFALASTSFS--R 89 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC----------------CCC-CeEECCCCCEEEEEecccc--c
Confidence 345566666542 22 8899999988765433221 123 7899999998733211000 0
Q ss_pred CcCCCCCCceeceeeccCCccccccee--eEeeccccCCeEEEEeccCCCEEEEE--c-CCeEEEEEcCCCcceeeeccc
Q 010287 198 SFPPGGVSSLRLPVVTSQETNLVAGCR--RIYAHAHDYHINSISNNSDGETFISA--D-DLRINLWNLEISNQSFNIVDV 272 (513)
Q Consensus 198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~--~-d~~i~vwd~~~~~~~~~~~~~ 272 (513)
...+..++.+.++|....+........ ..+. +......++|+|||++|+.+ . ++.|.++| .+++....++
T Consensus 90 ~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~--~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i-- 164 (373)
T 2mad_H 90 IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD--VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLL-- 164 (373)
T ss_pred cccCCCCCeEEEEECCCCcEEEEEECCCccccc--cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEc--
Confidence 000123567888888654432211100 0000 01234578999999999987 3 57899999 8665432201
Q ss_pred CccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecC
Q 010287 273 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 352 (513)
Q Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~ 352 (513)
.. . .++.+.|+++..+++.+.||.+.++|. +++.... ..... .+.+.........+.+++
T Consensus 165 ---~~---~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~----~~~~~------~~~~~~p~~~~~~~~~~~ 224 (373)
T 2mad_H 165 ---SS---P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA----GLVGA------MLTAAQNLLTQPAQANKS 224 (373)
T ss_pred ---CC---C---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE----Eeccc------cccCCcceeecceeEecC
Confidence 11 1 135566777677888889999999999 7664311 00000 000000112334567765
Q ss_pred CE-EEEEeCCeEEEEEccCCC-CCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC----------CCc
Q 010287 353 RH-ILSRDYMTLKLWDINMDS-GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY----------SNL 420 (513)
Q Consensus 353 ~~-l~~~~~~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~ 420 (513)
.. ++....+.+.+.|+.... ..+..+......... .. ........+.++||++.|+++.. ++.
T Consensus 225 ~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~-~~----~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 225 GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKA-DT----WRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred CEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccc-cc----eecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence 44 444444889999986411 112222111100000 00 00001124789999998877643 357
Q ss_pred EEEEecCCCCccceeecCCCCceeEEEEcCCCC-ceeeec-CCCeEEE
Q 010287 421 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGS-LSGVVRR 466 (513)
Q Consensus 421 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~d~~i~~ 466 (513)
|.++|+.++ +....+.... ....+.++|+++ .++++. .++.|.+
T Consensus 300 V~VID~~t~-~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~~~~V~V 345 (373)
T 2mad_H 300 VTSVTGLVG-QTSSQISLGH-DVDAISVAQDGGPDLYALSAGTEVLHI 345 (373)
T ss_pred EEEEECCCC-EEEEEEECCC-CcCeEEECCCCCeEEEEEcCCCCeEEE
Confidence 999999987 3434454322 467999999999 677766 4888888
No 219
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.17 E-value=7.6e-09 Score=96.33 Aligned_cols=260 Identities=7% Similarity=0.017 Sum_probs=147.0
Q ss_pred eEEEeecCCCceEEEee----------cCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287 117 KIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (513)
Q Consensus 117 ~i~~~~~~~~~~l~s~s----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 186 (513)
.+.++ +|++.++++. .++.|.++|..+++......+....... ....+..+.++|||+.+
T Consensus 122 gia~S--pDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~--------~g~~P~~~~~spDGk~l 191 (426)
T 3c75_H 122 HPVAA--EDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL--------VGTYQWMNALTPDNKNL 191 (426)
T ss_dssp EEEEC--TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC--------BSCCGGGSEECTTSSEE
T ss_pred ceEEC--CCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc--------cCCCcceEEEcCCCCEE
Confidence 78884 5888888775 4778999999998776554432000000 00123367899999987
Q ss_pred ccccCCCCCCCCcCCC--CCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCC-CEEEEE-cCCeEEEEEcCC
Q 010287 187 ERNFGCASNDSSFPPG--GVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEI 262 (513)
Q Consensus 187 ~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~vwd~~~ 262 (513)
+..+ ..+.+.+.|+...+...... .+. +....|++ ..+++. .||++.+.+..+
T Consensus 192 ------------yV~n~~~~~~VsVID~~t~kvv~~I~------v~g-----~~~~~p~g~~~~v~~~~dG~~~~V~~~~ 248 (426)
T 3c75_H 192 ------------LFYQFSPAPAVGVVDLEGKTFDRMLD------VPD-----CYHIFPASPTVFYMNCRDGSLARVDFAD 248 (426)
T ss_dssp ------------EEEECSSSCEEEEEETTTTEEEEEEE------CCS-----EEEEEEEETTEEEEEETTSSEEEEECCT
T ss_pred ------------EEEecCCCCeEEEEECCCCeEEEEEE------cCC-----ceeeccCCCcEEEEEcCCCCEEEEECCC
Confidence 3332 25678888876654321110 000 12223332 333333 577777777743
Q ss_pred CcceeeecccCccccccccCCe-EEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccc
Q 010287 263 SNQSFNIVDVKPANMEDLTEVI-TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 341 (513)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (513)
++..... . ..+.....++ ..+.+.+++ ..++..+..+.+.+.|+....... ...+......... ......
T Consensus 249 ~~v~~~~-~---~~~~v~~~p~~~~~~~~~dg-~~~~~~s~~g~V~ViD~~~~~~~v--~~~~~~~~~~~i~--~g~~p~ 319 (426)
T 3c75_H 249 GETKVTN-T---EVFHTEDELLINHPAFSLRS-GRLVWPTYTGKIFQADLTAEGATF--RAPIEALTEAERA--DDWRPG 319 (426)
T ss_dssp TCCEEEE-C---CCCSCTTSCBCSCCEECTTT-CEEEEEBTTSEEEEEEECSSCEEE--CCCEESSCTTTGG--GTEEEC
T ss_pred CcEEEEe-e---eeeccCCCceeeEeeecCCC-CEEEEEeCCCcEEEEeccCCceEE--eeeeeeccccccc--cccccC
Confidence 3322110 0 0011111111 235678888 555555778999999986544211 1111100000000 000001
Q ss_pred cEEEEEEeecCCEEEEEe-----------CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCC
Q 010287 342 SISDIKFARNGRHILSRD-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 410 (513)
Q Consensus 342 ~v~~i~~sp~~~~l~~~~-----------~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 410 (513)
....++++|++..+++.. .+.|.++|..+ .+.+.++...... ..+.|+||++
T Consensus 320 g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~vg~~P----------------~gia~spDg~ 382 (426)
T 3c75_H 320 GWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET-GERINKIELGHEI----------------DSINVSQDAE 382 (426)
T ss_dssp SSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECCSSS
T ss_pred CceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC-CeEEEEEECCCCc----------------CeEEEccCCC
Confidence 222368999988777642 14799999997 8888887654432 2899999999
Q ss_pred -EEEEEe-CCCcEEEEecCCCCccceee
Q 010287 411 -RVATGS-YSNLFRVFGCSEGSAESTTL 436 (513)
Q Consensus 411 -~l~~~~-~dg~i~vwd~~~~~~~~~~~ 436 (513)
.+++.. .++.|.++|+.+++ ....+
T Consensus 383 ~~lyv~n~~s~~VsVID~~t~k-vv~tI 409 (426)
T 3c75_H 383 PLLYALSAGTQTLHIYDAATGE-ELRSV 409 (426)
T ss_dssp CEEEEEETTTTEEEEEETTTCC-EEEEE
T ss_pred EEEEEEcCCCCeEEEEECCCCC-EEEEe
Confidence 888877 58999999999884 33443
No 220
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.14 E-value=2.5e-09 Score=108.23 Aligned_cols=237 Identities=11% Similarity=0.097 Sum_probs=142.1
Q ss_pred cccCCeEEEEeccCCCEEEEE-c-----CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC
Q 010287 230 AHDYHINSISNNSDGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK 303 (513)
Q Consensus 230 ~h~~~v~~~~~~~~~~~l~s~-~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 303 (513)
+|...+..++|||||++|+.+ + ...|++||+.+++.... .+.. .....++|+ |+ +.|+.++.+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-------~~~~--~k~~~~~Ws-Dg-~~l~y~~~~ 194 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-------PLKD--VKFSGISWL-GN-EGFFYSSYD 194 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-------EEEE--EESCCCEEE-TT-TEEEEEESS
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-------ccCC--ceeccEEEe-CC-CEEEEEEec
Confidence 344568889999999999854 2 25799999998764321 1111 112467899 98 777777776
Q ss_pred C-------------cEEEEEcCCcccccccceeeccccCCCCcccccc-ccccEEEEEEeecCCEEEEE-e---C-CeEE
Q 010287 304 G-------------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKFARNGRHILSR-D---Y-MTLK 364 (513)
Q Consensus 304 g-------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~sp~~~~l~~~-~---~-~~v~ 364 (513)
. .|++|++.+...... ..+... . |...+.++.|+|||++|+.. . . ..|+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~--~v~~~~----------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~ 262 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTAQEDDR--LVFGAI----------PAQHHRYVGATVTEDDRFLLISAANSTSGNRLY 262 (693)
T ss_dssp CCC-------CCCCEEEEEETTSCGGGCE--EEESCS----------GGGCCSEEEEEECTTSCEEEEEEESSSSCCEEE
T ss_pred CcccccccccCCCcEEEEEECCCCcccce--EEEecC----------CCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEE
Confidence 4 388999877553221 122211 1 22357789999999988752 2 2 5899
Q ss_pred EEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe-CC---CcEEEEecCCCCcc-ceeecCC
Q 010287 365 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YS---NLFRVFGCSEGSAE-STTLEAS 439 (513)
Q Consensus 365 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d---g~i~vwd~~~~~~~-~~~~~~~ 439 (513)
++|+.........+..+.... ... ++++|..|+..+ .+ +.|..+++.++... ...+..+
T Consensus 263 ~~d~~~~~~~~~~l~~~~~~~---------------~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 326 (693)
T 3iuj_A 263 VKDLSQENAPLLTVQGDLDAD---------------VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE 326 (693)
T ss_dssp EEETTSTTCCCEEEECSSSSC---------------EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC
T ss_pred EEECCCCCCceEEEeCCCCce---------------EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC
Confidence 999976333445554443321 122 667776665443 33 67899999876431 2345555
Q ss_pred CCceeEEEEcCCCCceeeecC-CCe--EEEe--cCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEc-C----CcEE
Q 010287 440 KNPMRRQVQTPSRPSRPLGSL-SGV--VRRV--KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-S----NSLY 509 (513)
Q Consensus 440 ~~~v~~~~~~~~~~~l~~~~~-d~~--i~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~----~~~~ 509 (513)
...+. .++++++.|+.... ++. |++. .+.... .+ .+.....+..++++|+++.|+... + ..++
T Consensus 327 ~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~--~l---~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~ 399 (693)
T 3iuj_A 327 RQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVR--EV---ALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLY 399 (693)
T ss_dssp CSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEE--EE---CCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEE
T ss_pred CCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeE--Ee---ecCCCceEEeeecCCCCCEEEEEecCCCCCCEEE
Confidence 55554 88999998876654 443 4442 111111 01 112245677888899988777443 2 4555
Q ss_pred EEe
Q 010287 510 MYY 512 (513)
Q Consensus 510 i~~ 512 (513)
.|+
T Consensus 400 ~~d 402 (693)
T 3iuj_A 400 RFE 402 (693)
T ss_dssp EEC
T ss_pred EEE
Confidence 553
No 221
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.06 E-value=1.2e-07 Score=87.12 Aligned_cols=168 Identities=15% Similarity=0.173 Sum_probs=92.3
Q ss_pred EEEeccCCCEEEEEc--------------------CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEE--eCCCC
Q 010287 237 SISNNSDGETFISAD--------------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF--HPTHC 294 (513)
Q Consensus 237 ~~~~~~~~~~l~s~~--------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~ 294 (513)
.+.|+|+++.+++++ +.+|.+||+.+.+ ....+ .+.........+.| +|++.
T Consensus 192 d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k-~~~tI-----~vg~~g~~P~~i~f~~~Pdg~ 265 (462)
T 2ece_A 192 DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK-RIHSL-----TLGEENRMALELRPLHDPTKL 265 (462)
T ss_dssp CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE-EEEEE-----ESCTTEEEEEEEEECSSTTCC
T ss_pred eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc-EeeEE-----ecCCCCCccceeEeeECCCCC
Confidence 466788888888773 7899999998653 33322 12111233456656 99994
Q ss_pred eEEEEEe-----CCCcEEEEEcCCcccccccceeeccccCC--CCc----cccccccccEEEEEEeecCCEEEEEeC--C
Q 010287 295 NMLAYSS-----SKGSIRLIDMRQSALCDTHSKLFEEQEAP--GTR----SFFTEIIASISDIKFARNGRHILSRDY--M 361 (513)
Q Consensus 295 ~~l~~~~-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~v~~i~~sp~~~~l~~~~~--~ 361 (513)
..++++- .+++|.+|....+... ....++..... ... .-+.+.......|.+||||++|.++.. +
T Consensus 266 ~aYV~~e~~~~~Lss~V~v~~~d~g~~~--~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d 343 (462)
T 2ece_A 266 MGFINMVVSLKDLSSSIWLWFYEDGKWN--AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIG 343 (462)
T ss_dssp EEEEEEEEETTTCCEEEEEEEEETTEEE--EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTT
T ss_pred EEEEEEeeeccCCCceEEEEEecCCcee--EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCC
Confidence 4455555 6778988776543321 11222111100 000 000111235788999999999998774 9
Q ss_pred eEEEEEccCCCC--Ceeeeeccccccccccc---ccccCCccceeeEEEeCCCCEEEEEe
Q 010287 362 TLKLWDINMDSG--PVATFQVHEHLRPKLCD---LYENDSIFDKFECCLSGDGGRVATGS 416 (513)
Q Consensus 362 ~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~ 416 (513)
.|.+||+...+. .+..+...... ..... ..-.... ..+.++|||++|+++.
T Consensus 344 ~VavfdV~d~~~~~lv~~I~tGG~~-~~~~~~~G~~~~ggP---r~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 344 EVRQYDISNPFKPVLTGKVKLGGIF-HRADHPAGHKLTGAP---QMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEEEECSSTTSCEEEEEEECBTTT-TCBCCTTSCCCCSCC---CCEEECTTSSEEEEEC
T ss_pred EEEEEEecCCCCcEEEEEEEeCCee-ccccccccccCCCCC---CEEEEcCCCCEEEEEc
Confidence 999999863232 22222221000 00000 0000001 2789999999999887
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.04 E-value=7.8e-08 Score=88.34 Aligned_cols=254 Identities=7% Similarity=-0.042 Sum_probs=146.0
Q ss_pred CCeEEEEeccCCCEEEEE---cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC-----CC
Q 010287 233 YHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-----KG 304 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----dg 304 (513)
..+..++++++++.+++. .++.++||.+.++ .....-... .....+...+..+++++++ +++++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g-~~~~~p~~~-~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD-GLIPFPPQS-GNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT-EEEESCCCC-SSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC-CeecCCCcc-cCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCC
Confidence 568899999999999986 2453556665433 222110000 1122455789999999998 76665443 57
Q ss_pred cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEE-EEEe---C-CeEEEEEccCCCCCeeeee
Q 010287 305 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI-LSRD---Y-MTLKLWDINMDSGPVATFQ 379 (513)
Q Consensus 305 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l-~~~~---~-~~v~iwd~~~~~~~~~~~~ 379 (513)
.|.+||+.+++. .+.+..+... ..+...+..++++|++..+ ++.. . +.|.+||+.. ++..+.+.
T Consensus 94 ~i~~~d~~tg~~----~~~~~~~~~~------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~-g~~~r~~~ 162 (343)
T 2qe8_A 94 KLVAWDTLNNQL----SRVIYLPPPI------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT-GLAARVLQ 162 (343)
T ss_dssp EEEEEETTTTEE----EEEEECCTTT------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT-CCEEEECT
T ss_pred eEEEEECCCCeE----EEEEECChhh------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC-CCEEEEec
Confidence 899999988774 2333322110 1122456889999865444 4533 3 8999999985 55555443
Q ss_pred cccccccc-----cc--ccc---ccCC----ccceeeEEEeCCCCEEEEEeCCC-cEEEEecCC---CC----ccce--e
Q 010287 380 VHEHLRPK-----LC--DLY---ENDS----IFDKFECCLSGDGGRVATGSYSN-LFRVFGCSE---GS----AEST--T 435 (513)
Q Consensus 380 ~~~~~~~~-----~~--~~~---~~~~----~~~v~~~~~s~~~~~l~~~~~dg-~i~vwd~~~---~~----~~~~--~ 435 (513)
.|...... .. .++ .... ......++|+||++.|+.+..++ .++.++... +. .... .
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 242 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE 242 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE
T ss_pred CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE
Confidence 32211100 00 000 0000 01245799999999888877665 454444321 10 0000 1
Q ss_pred ecCCCCceeEEEEcCCCCceeeecCCCeEEEecC--CCCCccccCCccccccCCeeEEEEeCCCCEEEEEc
Q 010287 436 LEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG--ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 504 (513)
Q Consensus 436 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 504 (513)
..++......++++++|.++++...++.|.+... .+.. ... .......+..++|.++++++++.+
T Consensus 243 ~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~---~~~-~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 243 RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK---LLV-TDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE---EEE-ECGGGSCEEEEEECTTSCEEEEEC
T ss_pred ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE---EEE-ECCceecCCeeEECCCCcEEEEeC
Confidence 1123334557899999999888888888887332 1111 010 011245689999999998877765
No 223
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.03 E-value=1.8e-08 Score=93.77 Aligned_cols=258 Identities=10% Similarity=0.083 Sum_probs=140.6
Q ss_pred EEEEcCCCCEEEeec----------CCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccc
Q 010287 40 AIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (513)
Q Consensus 40 ~v~~sp~g~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (513)
.+++||||++|+++. .++.|.++|..+.+.+.. ..+.+-. . .
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~---------------------I~v~g~~-r------~ 173 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIAD---------------------IELPDAP-R------F 173 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEE---------------------EEETTCC-C------C
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEE---------------------EECCCcc-c------c
Confidence 799999999888776 367899999876653200 0011000 0 0
Q ss_pred cccccceeEEEeecCCCceEEEeec--CCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccc
Q 010287 110 EIEEKINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (513)
Q Consensus 110 ~~~~~i~~i~~~~~~~~~~l~s~s~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 187 (513)
........+.| ++|+++++++.. ++.|.+.|+.+++........... ... +.....-+.++++|+.+
T Consensus 174 ~~g~~P~~~~~--spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~-~~~-------p~g~~~~v~~~~dG~~~- 242 (426)
T 3c75_H 174 LVGTYQWMNAL--TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCY-HIF-------PASPTVFYMNCRDGSLA- 242 (426)
T ss_dssp CBSCCGGGSEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE-EEE-------EEETTEEEEEETTSSEE-
T ss_pred ccCCCcceEEE--cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCce-eec-------cCCCcEEEEEcCCCCEE-
Confidence 00022456778 558889988864 688999999998876654432100 000 00000012334444432
Q ss_pred cccCCCCCCCCcCCCCCCceeceeeccCCcccccceeeEeeccccCC-eEEEEeccCCCEEEEE-cCCeEEEEEcCCCcc
Q 010287 188 RNFGCASNDSSFPPGGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYH-INSISNNSDGETFISA-DDLRINLWNLEISNQ 265 (513)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~ 265 (513)
+.+........... .. +.....+ ...+.+.+++..++.. ..+.+.+.|......
T Consensus 243 ---------------------~V~~~~~~v~~~~~--~~-~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~ 298 (426)
T 3c75_H 243 ---------------------RVDFADGETKVTNT--EV-FHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA 298 (426)
T ss_dssp ---------------------EEECCTTCCEEEEC--CC-CSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE
T ss_pred ---------------------EEECCCCcEEEEee--ee-eccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce
Confidence 22221111000000 00 0000011 1235678887776665 678999999864432
Q ss_pred ee-eecccCc-cc--cccccCCeEEEEEeCCCCeEEEEEeC---------CCcEEEEEcCCcccccccceeeccccCCCC
Q 010287 266 SF-NIVDVKP-AN--MEDLTEVITSAEFHPTHCNMLAYSSS---------KGSIRLIDMRQSALCDTHSKLFEEQEAPGT 332 (513)
Q Consensus 266 ~~-~~~~~~~-~~--~~~~~~~i~~~~~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 332 (513)
.. ..+.+.. .. ..........+.++|++.+++++... ++.|.++|+.+.+. +..+...
T Consensus 299 ~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv----v~~I~vg----- 369 (426)
T 3c75_H 299 TFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER----INKIELG----- 369 (426)
T ss_dssp EECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE----EEEEEEE-----
T ss_pred EEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeE----EEEEECC-----
Confidence 11 1000000 00 00011122236899998455555432 35799999998876 3333332
Q ss_pred ccccccccccEEEEEEeecCC-EEEEEe--CCeEEEEEccCCCCCeeee
Q 010287 333 RSFFTEIIASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATF 378 (513)
Q Consensus 333 ~~~~~~~~~~v~~i~~sp~~~-~l~~~~--~~~v~iwd~~~~~~~~~~~ 378 (513)
.....+.|+||++ ++++.. ++.|.++|+.+ .+.+.++
T Consensus 370 --------~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t-~kvv~tI 409 (426)
T 3c75_H 370 --------HEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT-GEELRSV 409 (426)
T ss_dssp --------EEECEEEECCSSSCEEEEEETTTTEEEEEETTT-CCEEEEE
T ss_pred --------CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC-CCEEEEe
Confidence 2478899999999 888866 39999999997 7877776
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.00 E-value=1e-07 Score=95.68 Aligned_cols=191 Identities=8% Similarity=0.015 Sum_probs=114.4
Q ss_pred EEEEeccCCCEEEEE-cCC-------------------eEEEEEcCCCcceeeecccCccccccc-------cCCeEEEE
Q 010287 236 NSISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANMEDL-------TEVITSAE 288 (513)
Q Consensus 236 ~~~~~~~~~~~l~s~-~d~-------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~ 288 (513)
..+++++++..++.+ .++ .|..+|.++++...... ...| .....-+.
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~------~~~~d~wd~~~~~~p~l~~ 319 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQ------ETPGDNWDYTSTQPMILAD 319 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE------SSTTCCSCCCCCSCCEEEE
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEe------cCCCcccccccCCCcEEEe
Confidence 357888888888876 443 59999999888765531 1112 11222333
Q ss_pred EeCCCC--eEEEEEeCCCcEEEEEcCCcccccccceeeccccCC-------CCc--------------cc---ccccccc
Q 010287 289 FHPTHC--NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP-------GTR--------------SF---FTEIIAS 342 (513)
Q Consensus 289 ~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-------~~~--------------~~---~~~~~~~ 342 (513)
...+|. ..++.++.+|.+.++|.++++..... .....+ ... .. ..+...
T Consensus 320 ~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~- 394 (677)
T 1kb0_A 320 IKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK----NFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN- 394 (677)
T ss_dssp EEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE----ESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC-
T ss_pred cccCCcEeeEEEEECCCCEEEEEECCCCCEeccc----cccccCcccccCCCCceeeccccCcCCCccEECcCcccccC-
Confidence 334552 47888999999999999999874321 100000 000 00 001111
Q ss_pred EEEEEEeecCCEEEEEe-------------------------------------------C-CeEEEEEccCCCCCeeee
Q 010287 343 ISDIKFARNGRHILSRD-------------------------------------------Y-MTLKLWDINMDSGPVATF 378 (513)
Q Consensus 343 v~~i~~sp~~~~l~~~~-------------------------------------------~-~~v~iwd~~~~~~~~~~~ 378 (513)
-..++++|++.++++.. . +.|..||+.+ ++.+-.+
T Consensus 395 w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~ 473 (677)
T 1kb0_A 395 WHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSV 473 (677)
T ss_dssp SSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEE
T ss_pred CCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeec
Confidence 13578899887777632 1 6788899886 6666555
Q ss_pred ecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeec-CCCCceeEEEEcCCCCce
Q 010287 379 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE-ASKNPMRRQVQTPSRPSR 455 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l 455 (513)
..... +....+..++..++.++.||.+++||..+++.+ ..+. ++......+.+..+|+.+
T Consensus 474 ~~~~~----------------~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l-w~~~~~~~~~~~p~~y~~~G~~~ 534 (677)
T 1kb0_A 474 EHVSP----------------WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL-WEAPTGTGVVAAPSTYMVDGRQY 534 (677)
T ss_dssp EESSS----------------CCCCEEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEETTEEE
T ss_pred CCCCC----------------CcCcceEeCCCEEEEECCCCcEEEEECCCCcee-eeeeCCCCcccCCEEEEeCCEEE
Confidence 43221 114456678888999999999999999998443 4443 332233345666777644
No 225
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.99 E-value=2.6e-07 Score=85.03 Aligned_cols=233 Identities=11% Similarity=0.076 Sum_probs=139.0
Q ss_pred cCCCEEEEE--cCCeEEEEEcCCCcceeeecc-cCccccc-c-ccCCeEEEEEeCCCCeEEEEEeCC------CcEEEEE
Q 010287 242 SDGETFISA--DDLRINLWNLEISNQSFNIVD-VKPANME-D-LTEVITSAEFHPTHCNMLAYSSSK------GSIRLID 310 (513)
Q Consensus 242 ~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~-~~~~~~~-~-~~~~i~~~~~~~~~~~~l~~~~~d------g~i~vwd 310 (513)
.+.++|+.. .+++|.++|..+.....++.. +.|..+. . .......+...|++ +++++..+ |.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence 778888875 599999999975432222211 1111111 1 12245678888998 55555555 7899999
Q ss_pred cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--------------------CCeEEEEEccC
Q 010287 311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--------------------YMTLKLWDINM 370 (513)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--------------------~~~v~iwd~~~ 370 (513)
..+.+. +..+.....+. ..-..+-|+|+++.+++.. ..+|.+||+..
T Consensus 171 ~~T~~v----~~~~~~~~~~~---------~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~ 237 (462)
T 2ece_A 171 HYSFEP----LGKWEIDRGDQ---------YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK 237 (462)
T ss_dssp TTTCCE----EEECCSBCTTC---------CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred CCCCeE----EEEEccCCCCc---------cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence 998876 34444221110 1234578899999999874 38999999986
Q ss_pred CCCCeeeeecccccccccccccccCCccceeeEEE--eCCCCEEEEEe------CCCcEEEEecCCCCccc-eee--cC-
Q 010287 371 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL--SGDGGRVATGS------YSNLFRVFGCSEGSAES-TTL--EA- 438 (513)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~------~dg~i~vwd~~~~~~~~-~~~--~~- 438 (513)
++.+.++........ -..+.| +|++++++++. .+++|.+|....+.... +.+ ..
T Consensus 238 -~k~~~tI~vg~~g~~-------------P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~ 303 (462)
T 2ece_A 238 -RKRIHSLTLGEENRM-------------ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAE 303 (462)
T ss_dssp -TEEEEEEESCTTEEE-------------EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCE
T ss_pred -CcEeeEEecCCCCCc-------------cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCc
Confidence 666766655311000 013444 99999888766 46688777655431110 111 10
Q ss_pred ---------------CCCceeEEEEcCCCCceeeecC-CCeEEEecCCCCCccccCCcccccc---------------CC
Q 010287 439 ---------------SKNPMRRQVQTPSRPSRPLGSL-SGVVRRVKGADNSALDANGNAFDFS---------------MK 487 (513)
Q Consensus 439 ---------------~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~~~~~~~~~~~~~---------------~~ 487 (513)
.......+.+++|+++|.++.. .+.|.++.-.......+.. ..... ..
T Consensus 304 ~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~-~I~tGG~~~~~~~~~G~~~~gg 382 (462)
T 2ece_A 304 PLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTG-KVKLGGIFHRADHPAGHKLTGA 382 (462)
T ss_dssp ECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEE-EEECBTTTTCBCCTTSCCCCSC
T ss_pred cccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE-EEEeCCeeccccccccccCCCC
Confidence 0134568999999999876644 6777773322111111111 11111 13
Q ss_pred eeEEEEeCCCCEEEEEc
Q 010287 488 LLHLAWHPSENSIACAA 504 (513)
Q Consensus 488 i~~~~~sp~~~~la~~~ 504 (513)
...++++|||++|.++.
T Consensus 383 Pr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 383 PQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSSEEEEEC
T ss_pred CCEEEEcCCCCEEEEEc
Confidence 68899999999999876
No 226
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.91 E-value=2.4e-07 Score=84.78 Aligned_cols=257 Identities=9% Similarity=0.006 Sum_probs=142.0
Q ss_pred eEEEeecCCCceEEEee----------cCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCcc
Q 010287 117 KIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (513)
Q Consensus 117 ~i~~~~~~~~~~l~s~s----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 186 (513)
.+.++ +++++++++. .++.|.+||+.+++.............. ....+..++++|||+++
T Consensus 69 ~i~~s--pDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~--------~g~~P~~ia~SpDGk~l 138 (368)
T 1mda_H 69 LAVAG--HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS--------VGPRVHIIGNCASSACL 138 (368)
T ss_dssp EEEEC--TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC--------BSCCTTSEEECTTSSCE
T ss_pred ceEEC--CCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc--------cCCCcceEEEcCCCCEE
Confidence 68884 5888888875 4789999999999877665443110000 00123378999999987
Q ss_pred ccccCCCCCCCCcCCC--CCCceec--eeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEc
Q 010287 187 ERNFGCASNDSSFPPG--GVSSLRL--PVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNL 260 (513)
Q Consensus 187 ~~~~~~~~~~~~~~~~--~~~~i~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~ 260 (513)
+... ....+.+ +|... . .....+ + +..+.|+++..+.+ .|+.+.+.++
T Consensus 139 ------------yVan~~~~~~v~V~~iD~~t--v-------~~i~v~--~---~~~~~p~g~~~~~~~~~dg~~~~vd~ 192 (368)
T 1mda_H 139 ------------LFFLFGSSAAAGLSVPGASD--D-------QLTKSA--S---CFHIHPGAAATHYLGSCPASLAASDL 192 (368)
T ss_dssp ------------EEEECSSSCEEEEEETTTEE--E-------EEEECS--S---CCCCEEEETTEEECCCCTTSCEEEEC
T ss_pred ------------EEEccCCCCeEEEEEEchhh--c-------eEEECC--C---ceEEccCCCeEEEEEcCCCCEEEEEC
Confidence 3332 2345666 76644 0 000001 0 11233444433333 5888888888
Q ss_pred CC----CcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCcccc
Q 010287 261 EI----SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF 336 (513)
Q Consensus 261 ~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (513)
++ ......... ..+.-...+. . .+++ ..++..+. +.+.+.|+.+..... ...+...... ...
T Consensus 193 ~~~~~~~~~v~~~~t---~~i~vg~~P~---~-~~~~-~~~~~vs~-~~V~viD~~~~~~~v--~~~~~~~~~~---~~~ 258 (368)
T 1mda_H 193 AAAPAAAGIVGAQCT---GAQNCSSQAA---Q-ANYP-GMLVWAVA-SSILQGDIPAAGATM--KAAIDGNESG---RKA 258 (368)
T ss_dssp CSSCCCCEECCCCSC---TTSCBCSCCE---E-ETTT-TEEEECBS-SCCEEEECCSSCCEE--ECCCCSSCTH---HHH
T ss_pred ccccccCCeEEEEee---eeeeCCCCcc---c-cccC-CEEEEEcC-CEEEEEECCCCcceE--EEEEEecccc---ccc
Confidence 75 222210000 0111122333 3 6666 44555556 999999986532100 1111110000 000
Q ss_pred cc-ccccEEEEEEeecCCEEEEE-e---------CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEE
Q 010287 337 TE-IIASISDIKFARNGRHILSR-D---------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 405 (513)
Q Consensus 337 ~~-~~~~v~~i~~sp~~~~l~~~-~---------~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (513)
.+ .......+.++|+++.++.+ . .+.+.++|+.+ .+.+..+...... ..+.|
T Consensus 259 ~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg~~p----------------~gi~~ 321 (368)
T 1mda_H 259 DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHDS----------------DAIIA 321 (368)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEEE----------------CEEEE
T ss_pred cccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECCCCc----------------ceEEE
Confidence 00 00112226899999877753 2 22566999997 7777777655432 37999
Q ss_pred eCCCCE-EEEEe-CCCcEEEEecCCCCccceeecCCCC
Q 010287 406 SGDGGR-VATGS-YSNLFRVFGCSEGSAESTTLEASKN 441 (513)
Q Consensus 406 s~~~~~-l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~ 441 (513)
+|||+. +++.. .++.|.++|+.++ +...+++....
T Consensus 322 s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~vg~~ 358 (368)
T 1mda_H 322 AQDGASDNYANSAGTEVLDIYDAASD-QDQSSVELDKG 358 (368)
T ss_dssp CCSSSCEEEEEETTTTEEEEEESSSC-EEEEECCCCSC
T ss_pred CCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEECCCC
Confidence 999984 55666 5899999999988 44455554443
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.89 E-value=7.6e-07 Score=89.50 Aligned_cols=199 Identities=12% Similarity=0.045 Sum_probs=112.9
Q ss_pred EEEeccCCCEEEEE-cCC-------------------eEEEEEcCCCcceeeecccCccccc--cccCCeEEEEEeCCCC
Q 010287 237 SISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANME--DLTEVITSAEFHPTHC 294 (513)
Q Consensus 237 ~~~~~~~~~~l~s~-~d~-------------------~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~ 294 (513)
.++++++...++.+ .++ .|..+|.++++........ +...- .....+.......++.
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~-~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTT-PGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESS-TTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecC-CcccccccCCCCcEEEeeccCCc
Confidence 57888888888887 554 4999999998876643110 00000 0112222223333441
Q ss_pred --eEEEEEeCCCcEEEEEcCCcccccccce---eeccc------------------cCCCCcccc---ccccccEEEEEE
Q 010287 295 --NMLAYSSSKGSIRLIDMRQSALCDTHSK---LFEEQ------------------EAPGTRSFF---TEIIASISDIKF 348 (513)
Q Consensus 295 --~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~~------------------~~~~~~~~~---~~~~~~v~~i~~ 348 (513)
..++.++.+|.++++|.++++....... .+... ......... .+.. ....+++
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~-~w~~~a~ 396 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAH-DWQPMSY 396 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSS-CSSCCEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCccccc-CCCcceE
Confidence 2788899999999999999987421100 00000 000000000 0000 1233788
Q ss_pred eecCCEEEEEe----------------------------------------------CCeEEEEEccCCCCCeeeeeccc
Q 010287 349 ARNGRHILSRD----------------------------------------------YMTLKLWDINMDSGPVATFQVHE 382 (513)
Q Consensus 349 sp~~~~l~~~~----------------------------------------------~~~v~iwd~~~~~~~~~~~~~~~ 382 (513)
+|+..++++.. +|.|..||+.+ ++.+-.+..+.
T Consensus 397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~ 475 (689)
T 1yiq_A 397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYVT 475 (689)
T ss_dssp ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEESS
T ss_pred CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCCC
Confidence 88877777531 15688888876 66665554433
Q ss_pred ccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCC-CCceeEEEEcCCCCce
Q 010287 383 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSR 455 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l 455 (513)
.. ..-.+...+.+++.++.||.|+.||.++++. +-.++.. ......+.+..+|+..
T Consensus 476 ~~----------------~~g~~~tagglvf~gt~dg~l~a~D~~tG~~-lw~~~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 476 IF----------------NGGTLSTAGNLVFEGSADGRVIAYAADTGEK-LWEQPAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp SC----------------CCCEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEETTEEE
T ss_pred Cc----------------cCccceECCCEEEEECCCCcEEEEECCCCcc-ceeeeCCCCcccCceEEEECCEEE
Confidence 21 1235666788999999999999999999844 3344332 2222345666776643
No 228
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.86 E-value=1.5e-09 Score=100.73 Aligned_cols=144 Identities=8% Similarity=0.024 Sum_probs=69.7
Q ss_pred cCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccc
Q 010287 242 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 320 (513)
Q Consensus 242 ~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 320 (513)
.++..++++ .|+.|+.||.++++...... ....... ...++ +. .+ ..+++++.|+.+..||.++|+...+
T Consensus 47 ~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~-~~~~~~~-~~sp~----~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~- 117 (369)
T 2hz6_A 47 VEEPAFLPDPNDGSLYTLGSKNNEGLTKLP-FTIPELV-QASPC----RS-SD-GILYMGKKQDIWYVIDLLTGEKQQT- 117 (369)
T ss_dssp ---CCEEECTTTCCEEEC-----CCSEECS-CCHHHHH-TTCSC----C-------CCCCEEEEEEEEECCC--------
T ss_pred cCCCEEEEeCCCCEEEEEECCCCceeeeee-ccCcccc-ccCce----Ee-cC-CEEEEEeCCCEEEEEECCCCcEEEE-
Confidence 456667776 79999999998776543320 0000000 01111 11 23 4677888899999999999886432
Q ss_pred ceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccc
Q 010287 321 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 399 (513)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (513)
+... . ...++|++..+++++. +.|+.||.++ ++.+..+......
T Consensus 118 ---~~~~-------------~---~~~~~p~~~~v~~~~~dg~v~a~d~~t-G~~~W~~~~~~~~--------------- 162 (369)
T 2hz6_A 118 ---LSSA-------------F---ADSLSPSTSLLYLGRTEYTITMYDTKT-RELRWNATYFDYA--------------- 162 (369)
T ss_dssp ----------------------------------EEEEEEEEEEECCCSSS-SSCCCEEEEEEEC---------------
T ss_pred ---ecCC-------------C---cccccccCCEEEEEecCCEEEEEECCC-CCEEEeEeccccc---------------
Confidence 2111 0 1345567777777664 9999999987 6665554432211
Q ss_pred eeeEEEeCCC---CEEEEEeCCCcEEEEecCCCCc
Q 010287 400 KFECCLSGDG---GRVATGSYSNLFRVFGCSEGSA 431 (513)
Q Consensus 400 v~~~~~s~~~---~~l~~~~~dg~i~vwd~~~~~~ 431 (513)
...++++. ..+++++.||.|+.||..+++.
T Consensus 163 --~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 163 --ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp --CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred --CccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 22333332 4577788899999999998843
No 229
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.83 E-value=0.00011 Score=75.78 Aligned_cols=255 Identities=10% Similarity=0.058 Sum_probs=143.4
Q ss_pred CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCc-cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287 233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 311 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~ 311 (513)
..|.++...++|.+.+...+ -|.+|+..+... ..+...+ ....-....|.++...+++ . |-.|+.++-|..|+.
T Consensus 263 ~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~--~~~~~~~~~~~~l~~~~i~~i~~D~~g-~-lWigt~~~Gl~~~~~ 337 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSF--ASYSSNPVENGSLSQRSVRSIFMDSQG-G-MWLGTYFGGLNYYHP 337 (795)
T ss_dssp SBEEEEEECTTSCEEEEESS-CEEEEETTTTEE--EEECCCTTSTTSCSSSCEEEEEECTTS-C-EEEEESSSCEEEECG
T ss_pred CeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeE--EEEecCCCCCCCCCCCcEEEEEEeCCc-C-EEEEECCCCeEEeCC
Confidence 34888988888887776655 588898775432 1111100 0011124679999999987 4 445677788888987
Q ss_pred CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccc
Q 010287 312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 391 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
.+... ..+....... .-....|.++...++|.+.+...++-|..|+..+ + ....+........ ..+
T Consensus 338 ~~~~~-----~~~~~~~~~~-----~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~-~-~~~~~~~~~~~~~--~~l 403 (795)
T 4a2l_A 338 IRNRF-----KNIRNIPYKN-----SLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPIT-Q-RFTSYTLQEDESA--RGI 403 (795)
T ss_dssp GGGSS-----EEECCCTTSS-----SCSCSSEEEEEECTTSCEEEEESSSCEEEECTTT-C-CEEEECCC--------CC
T ss_pred Ccccc-----eEEcCCCCCC-----CCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCC-C-cEEEEecCCCCcc--cCC
Confidence 65432 1121110000 0012469999988888866654456789998764 2 2333321110000 000
Q ss_pred cccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceee---cCCCCceeEEEEcCCCCceeeecCCCeEEEe-
Q 010287 392 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL---EASKNPMRRQVQTPSRPSRPLGSLSGVVRRV- 467 (513)
Q Consensus 392 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~- 467 (513)
.-..|.++...++++.|..|+.++-|..||..++....... ......|.++...+++.+.+... +|..++-
T Consensus 404 ----~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~ 478 (795)
T 4a2l_A 404 ----GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNP 478 (795)
T ss_dssp ----SCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEET
T ss_pred ----CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeC
Confidence 00125578888888856667777779999988763221111 02345688888888887655544 6655551
Q ss_pred cCCCCCccccCCc-cccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287 468 KGADNSALDANGN-AFDFSMKLLHLAWHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 468 ~~~~~~~~~~~~~-~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 512 (513)
+............ ..-....|.++...+++++.+... ++++.|.
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~ 523 (795)
T 4a2l_A 479 EQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFK 523 (795)
T ss_dssp TTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEE
T ss_pred CCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEe
Confidence 1111110000000 001236799999999998777555 7888774
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.82 E-value=4.4e-06 Score=77.79 Aligned_cols=182 Identities=10% Similarity=0.077 Sum_probs=95.7
Q ss_pred EEEEE-cCCeEEEEEcCCCcceeeecccCc-cccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccccee
Q 010287 246 TFISA-DDLRINLWNLEISNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 323 (513)
Q Consensus 246 ~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 323 (513)
.++.+ .++.|..+|.++++...+.....+ ....... ..... + ..++.++.++.+..+|..+++...+
T Consensus 145 ~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~----~~~~~-~--~~v~~g~~~g~l~~~d~~tG~~~w~---- 213 (376)
T 3q7m_A 145 LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGES----APTTA-F--GAAVVGGDNGRVSAVLMEQGQMIWQ---- 213 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCC----CCEEE-T--TEEEECCTTTEEEEEETTTCCEEEE----
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCC----CcEEE-C--CEEEEEcCCCEEEEEECCCCcEEEE----
Confidence 45555 788999999988876654311000 0000011 11222 3 3567788899999999998876432
Q ss_pred eccccCCCCccccccccccEEEEEEee--cCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccce
Q 010287 324 FEEQEAPGTRSFFTEIIASISDIKFAR--NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 400 (513)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~v~~i~~sp--~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 400 (513)
........... + ..+..+.-.| .+..++.++ ++.+..+|..+ ++.+........
T Consensus 214 ~~~~~~~~~~~-~----~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t-G~~~w~~~~~~~----------------- 270 (376)
T 3q7m_A 214 QRISQATGSTE-I----DRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS-GQIMWKRELGSV----------------- 270 (376)
T ss_dssp EECCC----------------CCCCCCEEETTEEEEECTTSCEEEEETTT-CCEEEEECCCCE-----------------
T ss_pred EecccCCCCcc-c----ccccccCCCcEEECCEEEEEecCcEEEEEECCC-CcEEeeccCCCC-----------------
Confidence 11110000000 0 0000000111 245555555 58999999986 665544432110
Q ss_pred eeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeec-CCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 401 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE-ASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 401 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
..+.. ++..|+.++.++.|..+|..+++.+ -... ........... .+..|..++.+|.+..
T Consensus 271 ~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~-w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~ 332 (376)
T 3q7m_A 271 NDFIV--DGNRIYLVDQNDRVMALTIDGGVTL-WTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHW 332 (376)
T ss_dssp EEEEE--ETTEEEEEETTCCEEEEETTTCCEE-EEECTTTTSCCCCCEE--ETTEEEEECTTSEEEE
T ss_pred CCceE--ECCEEEEEcCCCeEEEEECCCCcEE-EeecccCCCcccCCEE--ECCEEEEEeCCCeEEE
Confidence 12232 4667888888999999999988433 2222 11122222222 2456777788887777
No 231
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.78 E-value=2e-05 Score=69.25 Aligned_cols=175 Identities=11% Similarity=0.054 Sum_probs=101.3
Q ss_pred CeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC--CCcEEEE
Q 010287 234 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLI 309 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~vw 309 (513)
....+++++++..|+.+ ..+.|.++++..... ..+. .........++++|++..++++... .+.|..+
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~-------~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~ 151 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLF-------DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS 151 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-------CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEE-------ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEE
Confidence 36789999976666655 478999999874322 1111 1112457899999965355555433 4688888
Q ss_pred EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecccccccc
Q 010287 310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPK 387 (513)
Q Consensus 310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~ 387 (513)
++..... ..+... .......++++|++..|+.++. +.|.++|... ......+.....
T Consensus 152 ~~dg~~~-----~~~~~~-----------~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~~~~---- 210 (267)
T 1npe_A 152 HMDGTNR-----RILAQD-----------NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEGLQY---- 210 (267)
T ss_dssp ETTSCCC-----EEEECT-----------TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEECCCS----
T ss_pred ecCCCCc-----EEEEEC-----------CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC-CceEEEecCCCC----
Confidence 8653221 111100 0135788999998887776653 8999999863 221111111010
Q ss_pred cccccccCCccceeeEEEeCCCCEEE-EEeCCCcEEEEecCCCCccceeecCCC-CceeEEEEcCCC
Q 010287 388 LCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEGSAESTTLEASK-NPMRRQVQTPSR 452 (513)
Q Consensus 388 ~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~ 452 (513)
-..++.. +..|+ +...++.|..+|..+++ ....+.... .....+++.|++
T Consensus 211 ------------P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~-~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 211 ------------PFAVTSY--GKNLYYTDWKTNSVIAMDLAISK-EMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp ------------EEEEEEE--TTEEEEEETTTTEEEEEETTTTE-EEEEECCSSCCCCCCEEEECSC
T ss_pred ------------ceEEEEe--CCEEEEEECCCCeEEEEeCCCCC-ceEEEccccccccceeeecCcc
Confidence 1245554 44555 44466899999998773 334444322 234567777663
No 232
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.72 E-value=0.00042 Score=71.35 Aligned_cols=250 Identities=12% Similarity=0.067 Sum_probs=142.0
Q ss_pred CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287 233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 312 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 312 (513)
..|.++...++|.+.+...++-|..++..+.. +..+...+..-.-....|.++...+++ .+ -.|+.++-+..||..
T Consensus 310 ~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~l~~~~V~~i~~d~~g-~l-WiGt~~~Gl~~~~~~ 385 (795)
T 4a2l_A 310 RSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNR--FKNIRNIPYKNSLSDNVVSCIVEDKDK-NL-WIGTNDGGLNLYNPI 385 (795)
T ss_dssp SCEEEEEECTTSCEEEEESSSCEEEECGGGGS--SEEECCCTTSSSCSCSSEEEEEECTTS-CE-EEEESSSCEEEECTT
T ss_pred CcEEEEEEeCCcCEEEEECCCCeEEeCCCccc--ceEEcCCCCCCCCCCCeeEEEEECCCC-CE-EEEECCCCeEEEcCC
Confidence 45889999999987776666778889876433 111111000001124569999998887 54 447777788999987
Q ss_pred Ccccccccceeecccc-CCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccccccc
Q 010287 313 QSALCDTHSKLFEEQE-APGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 390 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 390 (513)
++.. ..+.... .+. ..-....|.++...+++..|..|+. +.|..||..+ ++ ...+...... +
T Consensus 386 ~~~~-----~~~~~~~~~~~----~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~-~~-~~~~~~~~~~---l-- 449 (795)
T 4a2l_A 386 TQRF-----TSYTLQEDESA----RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS-GQ-VENFNQRNSQ---L-- 449 (795)
T ss_dssp TCCE-----EEECCC----------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT-CC-EEEECTTTSC---C--
T ss_pred CCcE-----EEEecCCCCcc----cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC-Cc-EEEeecCCCC---c--
Confidence 6542 1121100 000 0001246899999888884555554 7799999874 33 3333211100 0
Q ss_pred ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceee-----cCCCCceeEEEEcCCCCceeeecCCCeEE
Q 010287 391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL-----EASKNPMRRQVQTPSRPSRPLGSLSGVVR 465 (513)
Q Consensus 391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 465 (513)
.. ..|.++...++|++.+. +.+ -|.+|+..++....... ......|.++...+++.+.+... +|..+
T Consensus 450 --~~---~~v~~i~~d~~g~lwig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~ 521 (795)
T 4a2l_A 450 --VN---ENVYAILPDGEGNLWLG-TLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSV 521 (795)
T ss_dssp --SC---SCEEEEEECSSSCEEEE-ESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEE
T ss_pred --CC---CeeEEEEECCCCCEEEE-ecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEE
Confidence 00 12457888888876554 444 48889987653221111 11235688888888888766554 67666
Q ss_pred E-ecCCCCCccccC-CccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287 466 R-VKGADNSALDAN-GNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 466 ~-~~~~~~~~~~~~-~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 512 (513)
+ ...... ..... .........|.++...++|++.+... ++++.|+
T Consensus 522 ~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~d 568 (795)
T 4a2l_A 522 FKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EGFYCFN 568 (795)
T ss_dssp EEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SCEEEEE
T ss_pred EeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CCceeEC
Confidence 5 111111 00000 01111356799999999998666544 4888775
No 233
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.71 E-value=1.3e-06 Score=79.76 Aligned_cols=181 Identities=11% Similarity=0.125 Sum_probs=109.5
Q ss_pred eEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCc
Q 010287 235 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 314 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 314 (513)
+.++...+++..++...++.|..+|.. ++..... ......+.++...+++ .+++ ++ +.+..+| .++
T Consensus 139 ~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~--------~~~~~~~~~~~~d~~g-~l~v-~t--~~l~~~d-~~g 204 (330)
T 3hxj_A 139 YATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRF--------KTNDAITSAASIGKDG-TIYF-GS--DKVYAIN-PDG 204 (330)
T ss_dssp CSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEE--------ECSSCCCSCCEECTTC-CEEE-ES--SSEEEEC-TTS
T ss_pred eeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEE--------ecCCCceeeeEEcCCC-EEEE-Ee--CEEEEEC-CCC
Confidence 445566777776655578999999988 5543322 1123445667777776 5444 44 8889999 665
Q ss_pred ccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeeccccccccccccccc
Q 010287 315 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEN 394 (513)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (513)
.... .+... ...+.++...++|.+.+...++.|..+|.. +..+..+.......
T Consensus 205 ~~~~----~~~~~------------~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~--g~~~~~~~~~~~~~--------- 257 (330)
T 3hxj_A 205 TEKW----NFYAG------------YWTVTRPAISEDGTIYVTSLDGHLYAINPD--GTEKWRFKTGKRIE--------- 257 (330)
T ss_dssp CEEE----EECCS------------SCCCSCCEECTTSCEEEEETTTEEEEECTT--SCEEEEEECSSCCC---------
T ss_pred cEEE----EEccC------------CcceeceEECCCCeEEEEcCCCeEEEECCC--CCEeEEeeCCCCcc---------
Confidence 5421 11111 134667778888776665556788888743 55554444322211
Q ss_pred CCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 395 DSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 395 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
..+.+.+++ .|..++.+|.|..+|. ++ ............+.++...+++. |..++.+|.+.+
T Consensus 258 ------~~~~~~~~g-~l~v~t~~ggl~~~d~-~g-~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~ 319 (330)
T 3hxj_A 258 ------SSPVIGNTD-TIYFGSYDGHLYAINP-DG-TEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYA 319 (330)
T ss_dssp ------SCCEECTTS-CEEEECTTCEEEEECT-TS-CEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEE
T ss_pred ------ccceEcCCC-eEEEecCCCCEEEECC-CC-cEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEE
Confidence 134555555 4667788888999996 44 33334444455566777777766 455778888888
No 234
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.69 E-value=7e-07 Score=85.26 Aligned_cols=101 Identities=11% Similarity=0.076 Sum_probs=67.5
Q ss_pred cEEEEEEeecCCEEEEEeC--CeEEEEEccCCCC------------CeeeeecccccccccccccccCCccceeeEEEeC
Q 010287 342 SISDIKFARNGRHILSRDY--MTLKLWDINMDSG------------PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 407 (513)
Q Consensus 342 ~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 407 (513)
...++.++|||+++++++. .+|.++|+.+ .+ .......... -..++|+|
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~-~~~~~~~~l~~~~~v~~~v~vG~g----------------P~h~aF~~ 340 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR-FDAVFYENADPRSAVVAEPELGLG----------------PLHTAFDG 340 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGG-HHHHHHSCCCGGGGEEECCBCCSC----------------EEEEEECT
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcc-cccccccccCcccceEEEcCCCCC----------------cceEEECC
Confidence 4677999999999998764 9999999985 21 1111111111 13789999
Q ss_pred CCCEEEEEeCCCcEEEEecCCC---------CccceeecCCCCce-----eEEEEcCCCCceeeec
Q 010287 408 DGGRVATGSYSNLFRVFGCSEG---------SAESTTLEASKNPM-----RRQVQTPSRPSRPLGS 459 (513)
Q Consensus 408 ~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~ 459 (513)
+|...++.-.|+.|.+||+... .+.+.++..|..|- ..+..+|||++|++..
T Consensus 341 dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 341 RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 9943345568999999999862 13445566665543 2335589999998763
No 235
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.66 E-value=6.6e-07 Score=81.89 Aligned_cols=255 Identities=9% Similarity=0.033 Sum_probs=134.7
Q ss_pred EEEEcCCCCEEEeec----------CCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCC-CCccccccc
Q 010287 40 AIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH-EPEFDYLKS 108 (513)
Q Consensus 40 ~v~~sp~g~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~~~~~ 108 (513)
.+.|+|||+++.++. .++.|.+||..+.+.+ .++... .+.+ +
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv-----------------------~~I~v~~~~~~--~-- 121 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI-----------------------ADIELPDAPRF--S-- 121 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE-----------------------EEEEETTSCSC--C--
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE-----------------------EEEECCCcccc--c--
Confidence 699999999888875 3678999998876642 111100 0000 0
Q ss_pred ccccccceeEEEeecCCCceEEEeec--CCeEEE--EEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCC
Q 010287 109 LEIEEKINKIRWCQSANSALYLLSTN--DKTIKL--WKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (513)
Q Consensus 109 ~~~~~~i~~i~~~~~~~~~~l~s~s~--d~~i~v--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 184 (513)
.......+.+ ++|+++++++.. +..+.+ +|+.+ . ...... . .....|+|+
T Consensus 122 --~g~~P~~ia~--SpDGk~lyVan~~~~~~v~V~~iD~~t--v-~~i~v~--~-----------------~~~~~p~g~ 175 (368)
T 1mda_H 122 --VGPRVHIIGN--CASSACLLFFLFGSSAAAGLSVPGASD--D-QLTKSA--S-----------------CFHIHPGAA 175 (368)
T ss_dssp --BSCCTTSEEE--CTTSSCEEEEECSSSCEEEEEETTTEE--E-EEEECS--S-----------------CCCCEEEET
T ss_pred --cCCCcceEEE--cCCCCEEEEEccCCCCeEEEEEEchhh--c-eEEECC--C-----------------ceEEccCCC
Confidence 0012567888 458888988864 467888 88877 1 111111 0 011223333
Q ss_pred ccccccCCCCCCCCcCCCCCCceeceeecc-----CCcccccceeeEeeccccCCeEEEEeccCCCEEEE-EcCCeEEEE
Q 010287 185 CGERNFGCASNDSSFPPGGVSSLRLPVVTS-----QETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-ADDLRINLW 258 (513)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~d~~i~vw 258 (513)
.. .+..+.++.+.+.++.. ........ . .......+. . .+++..++. .. +.+.+.
T Consensus 176 ~~-----------~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t--~-~i~vg~~P~---~-~~~~~~~~~vs~-~~V~vi 236 (368)
T 1mda_H 176 AT-----------HYLGSCPASLAASDLAAAPAAAGIVGAQCT--G-AQNCSSQAA---Q-ANYPGMLVWAVA-SSILQG 236 (368)
T ss_dssp TE-----------EECCCCTTSCEEEECCSSCCCCEECCCCSC--T-TSCBCSCCE---E-ETTTTEEEECBS-SCCEEE
T ss_pred eE-----------EEEEcCCCCEEEEECccccccCCeEEEEee--e-eeeCCCCcc---c-cccCCEEEEEcC-CEEEEE
Confidence 21 02223344444444433 11100000 0 000111222 3 455554444 46 899999
Q ss_pred EcCCCcc-eeeecccCcccccc---ccCCeEEEEEeCCCCeEEEEEe-C-------CCcEEEEEcCCcccccccceeecc
Q 010287 259 NLEISNQ-SFNIVDVKPANMED---LTEVITSAEFHPTHCNMLAYSS-S-------KGSIRLIDMRQSALCDTHSKLFEE 326 (513)
Q Consensus 259 d~~~~~~-~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~-~-------dg~i~vwd~~~~~~~~~~~~~~~~ 326 (513)
|...... ....+.+....... .......+.++|++..++++.. . ++.+.++|+.+++.. ..+..
T Consensus 237 D~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv----~~i~v 312 (368)
T 1mda_H 237 DIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS----GPISN 312 (368)
T ss_dssp ECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE----ECCEE
T ss_pred ECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEE----EEEEC
Confidence 9864321 11111110000000 1111122689999844444443 2 235669999988763 33332
Q ss_pred ccCCCCccccccccccEEEEEEeecCC-EEEEEe--CCeEEEEEccCCCCCeeeeeccccc
Q 010287 327 QEAPGTRSFFTEIIASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATFQVHEHL 384 (513)
Q Consensus 327 ~~~~~~~~~~~~~~~~v~~i~~sp~~~-~l~~~~--~~~v~iwd~~~~~~~~~~~~~~~~~ 384 (513)
. .....+.|+|||+ .+++.. ++.|.++|+.+ .+.+.++.....+
T Consensus 313 g-------------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t-~kvv~~I~vg~~P 359 (368)
T 1mda_H 313 G-------------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS-DQDQSSVELDKGP 359 (368)
T ss_dssp E-------------EEECEEEECCSSSCEEEEEETTTTEEEEEESSS-CEEEEECCCCSCC
T ss_pred C-------------CCcceEEECCCCCEEEEEccCCCCeEEEEECCC-CcEEEEEECCCCC
Confidence 2 2478899999997 455555 49999999997 8888877655543
No 236
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.61 E-value=7.2e-06 Score=82.41 Aligned_cols=337 Identities=10% Similarity=0.067 Sum_probs=173.0
Q ss_pred CceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCC
Q 010287 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (513)
Q Consensus 126 ~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 205 (513)
+..+++++.++.|.-+|..+|+.+.............. .++......+++ .+.. ++.+..++
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~----~~~~~~~~~~~~--~~g~------------v~v~~~dg 131 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGE----ACCDAVNRGVAV--WKGK------------VYVGVLDG 131 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGG----CTTCSCCCCCEE--ETTE------------EEEECTTS
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCcccccc----ccccCCCCccEE--ECCE------------EEEEccCC
Confidence 34777788899999999999998877654322110000 000000001111 1222 24555677
Q ss_pred ceeceeeccCCcccccceeeEeeccccCCeEEEEecc---CCCEEEEEc------CCeEEEEEcCCCcceeeeccc--Cc
Q 010287 206 SLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGETFISAD------DLRINLWNLEISNQSFNIVDV--KP 274 (513)
Q Consensus 206 ~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~------d~~i~vwd~~~~~~~~~~~~~--~~ 274 (513)
.+..+|..+++..-..... .+......+..+| ++..++... ++.|+.||.++++...+.... .+
T Consensus 132 ~l~AlDa~TG~~~W~~~~~-----~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p 206 (689)
T 1yiq_A 132 RLEAIDAKTGQRAWSVDTR-----ADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDP 206 (689)
T ss_dssp EEEEEETTTCCEEEEEECC-----SCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT
T ss_pred EEEEEECCCCCEeeeecCc-----CCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCc
Confidence 7887777665543211110 0100001111111 444444322 689999999998876654211 00
Q ss_pred cc------c---------------ccccCCeEEEEEeCCCCeEEEEEeCCCc-------------------EEEEEcCCc
Q 010287 275 AN------M---------------EDLTEVITSAEFHPTHCNMLAYSSSKGS-------------------IRLIDMRQS 314 (513)
Q Consensus 275 ~~------~---------------~~~~~~i~~~~~~~~~~~~l~~~~~dg~-------------------i~vwd~~~~ 314 (513)
.. + .++......++++|+. .+++.+..++. |..+|.+++
T Consensus 207 ~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG 285 (689)
T 1yiq_A 207 KLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG 285 (689)
T ss_dssp TSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTC
T ss_pred ccccccccccccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCC
Confidence 00 0 0111112367888987 77888877763 999999999
Q ss_pred ccccccceeeccccCCCCccccccccccEEEEEEeecCC---EEEEEeC-CeEEEEEccCCCCCeeeeecccc-cccccc
Q 010287 315 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR---HILSRDY-MTLKLWDINMDSGPVATFQVHEH-LRPKLC 389 (513)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~---~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~ 389 (513)
+...+ ++...... .. + .....+.-.....+|+ .++.++. |.++++|.++ ++++........ ....+.
T Consensus 286 ~~~W~----~~~~~~d~-wd-~-~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~~ 357 (689)
T 1yiq_A 286 EYVWH----YQTTPGDA-WD-Y-TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRAT-GELLSAKGIVPQSWTKGMD 357 (689)
T ss_dssp CEEEE----EESSTTCC-SC-C-CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEEE
T ss_pred ceeEe----eecCCccc-cc-c-cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCC-CCEeccccccccccccccC
Confidence 87543 21110000 00 0 0112222233334665 6777765 9999999987 777643322110 000000
Q ss_pred -----------cc--cccCC----------ccceeeEEEeCCCCEEEEEeC-----------------------------
Q 010287 390 -----------DL--YENDS----------IFDKFECCLSGDGGRVATGSY----------------------------- 417 (513)
Q Consensus 390 -----------~~--~~~~~----------~~~v~~~~~s~~~~~l~~~~~----------------------------- 417 (513)
.. +.... -..-..++++|+..++++...
T Consensus 358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (689)
T 1yiq_A 358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG 437 (689)
T ss_dssp TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence 00 00000 000114789998888776532
Q ss_pred ----------------CCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEe---cCCCCCccccC
Q 010287 418 ----------------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV---KGADNSALDAN 478 (513)
Q Consensus 418 ----------------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~---~~~~~~~~~~~ 478 (513)
+|.|+.||+.+++ +.-..+.+. +...-.+...+.++..|+.|+.++.+ .+..++.....
T Consensus 438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG~-~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQQ-AAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp CCCSSHHHHHHHHTTCEEEEEEEETTTTE-EEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ccCcccccCCCCCCCcceeEEEEECCCCC-eEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 3779999999884 333333332 23334556678888899999999992 23333422211
Q ss_pred CccccccCCeeEEEEeCCCCEEE
Q 010287 479 GNAFDFSMKLLHLAWHPSENSIA 501 (513)
Q Consensus 479 ~~~~~~~~~i~~~~~sp~~~~la 501 (513)
......-+.|..+|+..+
T Consensus 516 -----~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 516 -----SGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp -----SCCCSCCEEEEETTEEEE
T ss_pred -----CCcccCceEEEECCEEEE
Confidence 122234577888887544
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.59 E-value=2.3e-06 Score=77.95 Aligned_cols=210 Identities=10% Similarity=0.060 Sum_probs=117.6
Q ss_pred CCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccce
Q 010287 244 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 322 (513)
Q Consensus 244 ~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 322 (513)
+..+..+ .++.|..+|.. ++..... ......+.++...+++ . +..++.++.+..+|.. ++...
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~--------~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~~~~---- 170 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRF--------KTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GTEKW---- 170 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEE--------ECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SCEEE----
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEE--------cCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CCEeE----
Confidence 3345555 68899999987 5544322 1123334556667676 4 5567788999999987 55421
Q ss_pred eeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceee
Q 010287 323 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 402 (513)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (513)
.+.... ..+.++...+++.+.++. +.|..+| .. ++....+...... +.+
T Consensus 171 ~~~~~~------------~~~~~~~~d~~g~l~v~t--~~l~~~d-~~-g~~~~~~~~~~~~---------------~~~ 219 (330)
T 3hxj_A 171 RFKTND------------AITSAASIGKDGTIYFGS--DKVYAIN-PD-GTEKWNFYAGYWT---------------VTR 219 (330)
T ss_dssp EEECSS------------CCCSCCEECTTCCEEEES--SSEEEEC-TT-SCEEEEECCSSCC---------------CSC
T ss_pred EEecCC------------CceeeeEEcCCCEEEEEe--CEEEEEC-CC-CcEEEEEccCCcc---------------eec
Confidence 222111 235556666777765555 7899999 43 5555444332211 236
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecC--CCCCccccCCc
Q 010287 403 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG--ADNSALDANGN 480 (513)
Q Consensus 403 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~--~~~~~~~~~~~ 480 (513)
+...++|. |..++.++.|..++.. + ............+..+.+.+++ .|..++.++.+..+.. ...+.
T Consensus 220 ~~~~~~g~-l~v~t~~~gl~~~~~~-g-~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~~g~~~~~------ 289 (330)
T 3hxj_A 220 PAISEDGT-IYVTSLDGHLYAINPD-G-TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINPDGTEKWN------ 289 (330)
T ss_dssp CEECTTSC-EEEEETTTEEEEECTT-S-CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECTTSCEEEE------
T ss_pred eEECCCCe-EEEEcCCCeEEEECCC-C-CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECCCCcEEEE------
Confidence 77787775 4556667788888753 3 2333333333333445555555 4555666765555221 11111
Q ss_pred cccccCCeeEEEEeCCCCEEEEEcCCcEEE
Q 010287 481 AFDFSMKLLHLAWHPSENSIACAASNSLYM 510 (513)
Q Consensus 481 ~~~~~~~i~~~~~sp~~~~la~~~~~~~~i 510 (513)
.......+.++...+++++.+.+.++.+.+
T Consensus 290 ~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~ 319 (330)
T 3hxj_A 290 FETGSWIIATPVIDENGTIYFGTRNGKFYA 319 (330)
T ss_dssp EECSSCCCSCCEECTTCCEEEECTTSCEEE
T ss_pred EEcCCccccceEEcCCCEEEEEcCCCeEEE
Confidence 011245577777888888666554554544
No 238
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.56 E-value=1.3e-05 Score=80.36 Aligned_cols=337 Identities=9% Similarity=-0.022 Sum_probs=172.6
Q ss_pred ceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCCCCCCcCCCCCCc
Q 010287 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (513)
Q Consensus 127 ~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 206 (513)
..+++++.++.|.-+|..+|+.+............. ..++......+++ ++.. ++.+..++.
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~----~~~~~~~~~~~a~--~~~~------------v~v~~~dg~ 139 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGF----KGCCDVVNRGVAL--WKGK------------VYVGAWDGR 139 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGG----GSSSCSCCCCCEE--ETTE------------EEEECTTSE
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccc----cccccCCCCCceE--ECCE------------EEEEcCCCE
Confidence 467777788999999999999887766543211000 0000000001111 2222 244556677
Q ss_pred eeceeeccCCcccccceeeEeeccccCCeEE-EEeccCCCEEEEE-c------CCeEEEEEcCCCcceeeecccCccc--
Q 010287 207 LRLPVVTSQETNLVAGCRRIYAHAHDYHINS-ISNNSDGETFISA-D------DLRINLWNLEISNQSFNIVDVKPAN-- 276 (513)
Q Consensus 207 i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~l~s~-~------d~~i~vwd~~~~~~~~~~~~~~~~~-- 276 (513)
+..+|..+++.......... ......+.+ ... .+..++.+ . ++.|+.+|.++++...+.....+..
T Consensus 140 l~alD~~tG~~~W~~~~~~~--~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~ 215 (677)
T 1kb0_A 140 LIALDAATGKEVWHQNTFEG--QKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSK 215 (677)
T ss_dssp EEEEETTTCCEEEEEETTTT--CCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTS
T ss_pred EEEEECCCCCEEeeecCCcC--cCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccc
Confidence 77777766544221110000 000001110 011 13344444 3 6899999999988766542211100
Q ss_pred -------------cc---------cccCCeEEEEEeCCCCeEEEEEeCCC-------------------cEEEEEcCCcc
Q 010287 277 -------------ME---------DLTEVITSAEFHPTHCNMLAYSSSKG-------------------SIRLIDMRQSA 315 (513)
Q Consensus 277 -------------~~---------~~~~~i~~~~~~~~~~~~l~~~~~dg-------------------~i~vwd~~~~~ 315 (513)
.. +.......++++|++ .+++.+..++ .|..+|.++++
T Consensus 216 ~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~ 294 (677)
T 1kb0_A 216 PFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGK 294 (677)
T ss_dssp CCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC
T ss_pred cccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCC
Confidence 00 111122367889987 6777776654 49999999988
Q ss_pred cccccceeeccccCCCCccccccccccEEEEEEeecC---CEEEEEeC-CeEEEEEccCCCCCeeeeeccccc-ccccc-
Q 010287 316 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG---RHILSRDY-MTLKLWDINMDSGPVATFQVHEHL-RPKLC- 389 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~---~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~- 389 (513)
....... ..+.... +.. .....-+....+| ..++.++. |.++++|..+ ++++..+...... ...+.
T Consensus 295 ~~W~~~~--~~~d~wd----~~~-~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~~~~~~d~ 366 (677)
T 1kb0_A 295 YKWHYQE--TPGDNWD----YTS-TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTN-GKFISAKNFVPVNWASGYDK 366 (677)
T ss_dssp EEEEEES--STTCCSC----CCC-CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEECT
T ss_pred EEEEEec--CCCcccc----ccc-CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCC-CCEeccccccccCcccccCC
Confidence 7543111 0010000 000 0122223444577 56777775 9999999997 7777655422110 00000
Q ss_pred --c--c-----cccCC--c-------cceeeEEEeCCCCEEEEEeC----------------------------------
Q 010287 390 --D--L-----YENDS--I-------FDKFECCLSGDGGRVATGSY---------------------------------- 417 (513)
Q Consensus 390 --~--~-----~~~~~--~-------~~v~~~~~s~~~~~l~~~~~---------------------------------- 417 (513)
. . +.... + ..-..++++|++.++++...
T Consensus 367 ~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 446 (677)
T 1kb0_A 367 HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFF 446 (677)
T ss_dssp TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEE
T ss_pred CCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccc
Confidence 0 0 00000 0 00115789999888877543
Q ss_pred ---------CCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEec---CCCCCccccCCcccccc
Q 010287 418 ---------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK---GADNSALDANGNAFDFS 485 (513)
Q Consensus 418 ---------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~---~~~~~~~~~~~~~~~~~ 485 (513)
.|.|..||+.+++ +.-..+ +..++....+...+..++.++.|+.++.++ +..++.... ...
T Consensus 447 ~~~~~~~~~~g~l~A~D~~tG~-~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~-----~~~ 519 (677)
T 1kb0_A 447 NAEPPKSKPFGRLLAWDPVAQK-AAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT-----GTG 519 (677)
T ss_dssp CSSCCCSCCEEEEEEEETTTTE-EEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC-----SSC
T ss_pred ccccCCCCCccEEEEEeCCCCc-EEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC-----CCC
Confidence 2789999999884 333332 223444555667788888889999999832 222232111 122
Q ss_pred CCeeEEEEeCCCCEEE
Q 010287 486 MKLLHLAWHPSENSIA 501 (513)
Q Consensus 486 ~~i~~~~~sp~~~~la 501 (513)
....-+.|.++|+.++
T Consensus 520 ~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 520 VVAAPSTYMVDGRQYV 535 (677)
T ss_dssp CCSCCEEEEETTEEEE
T ss_pred cccCCEEEEeCCEEEE
Confidence 2334566778887544
No 239
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.55 E-value=1.5e-05 Score=68.85 Aligned_cols=190 Identities=7% Similarity=0.017 Sum_probs=114.9
Q ss_pred CeEEEEEeCCCCeEEEEEeC--CCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-
Q 010287 283 VITSAEFHPTHCNMLAYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD- 359 (513)
Q Consensus 283 ~i~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~- 359 (513)
....+.|+|++ .++++.+. ++.|+++|+.+++.. ..+..... .....+++ ++..|+..+
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~----~~i~l~~~-----------~fgeGi~~--~g~~lyv~t~ 83 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVE----NIHKMDDS-----------YFGEGLTL--LNEKLYQVVW 83 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEE----EEEECCTT-----------CCEEEEEE--ETTEEEEEET
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEE----EEEecCCC-----------cceEEEEE--eCCEEEEEEe
Confidence 35799999987 77776654 689999999998863 22222111 11233444 455666655
Q ss_pred -CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecC
Q 010287 360 -YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 438 (513)
Q Consensus 360 -~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 438 (513)
++.+.++|..+ .+.+.++... ... ...+++||+.++++..++.|.++|..+.+.. ..+..
T Consensus 84 ~~~~v~viD~~t-~~v~~~i~~g-~~~----------------g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~-~~I~V 144 (266)
T 2iwa_A 84 LKNIGFIYDRRT-LSNIKNFTHQ-MKD----------------GWGLATDGKILYGSDGTSILYEIDPHTFKLI-KKHNV 144 (266)
T ss_dssp TCSEEEEEETTT-TEEEEEEECC-SSS----------------CCEEEECSSSEEEECSSSEEEEECTTTCCEE-EEEEC
T ss_pred cCCEEEEEECCC-CcEEEEEECC-CCC----------------eEEEEECCCEEEEECCCCeEEEEECCCCcEE-EEEEE
Confidence 39999999986 7777777543 111 3346678887777777899999999887433 33332
Q ss_pred --CCCc---eeEEEEcCCCCceeeecCCCeEEEecCC--CCCccccCCccc---------cccCCeeEEEEeCCCCEEEE
Q 010287 439 --SKNP---MRRQVQTPSRPSRPLGSLSGVVRRVKGA--DNSALDANGNAF---------DFSMKLLHLAWHPSENSIAC 502 (513)
Q Consensus 439 --~~~~---v~~~~~~~~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~---------~~~~~i~~~~~sp~~~~la~ 502 (513)
...+ .+.+.+. ++...+....++.|.+++.. +... .+..... .-....+.++|+|+++.|.+
T Consensus 145 g~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~-~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfV 222 (266)
T 2iwa_A 145 KYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLG-WILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFV 222 (266)
T ss_dssp EETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEE-EEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEE
T ss_pred CCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEE-EEECCCcccccccccccccCceEEEEEcCCCCEEEE
Confidence 1222 4566676 67666666556666662221 1110 0111000 01135689999999988776
Q ss_pred Ec--CCcEEEE
Q 010287 503 AA--SNSLYMY 511 (513)
Q Consensus 503 ~~--~~~~~i~ 511 (513)
+. .+.+++.
T Consensus 223 Tgk~~~~v~~i 233 (266)
T 2iwa_A 223 TGKLWPKLFEI 233 (266)
T ss_dssp EETTCSEEEEE
T ss_pred ECCCCCeEEEE
Confidence 55 4555543
No 240
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.54 E-value=3.9e-05 Score=69.52 Aligned_cols=157 Identities=10% Similarity=0.019 Sum_probs=90.4
Q ss_pred eEEEEecc-CCCEEEEE-c-----------------CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCe
Q 010287 235 INSISNNS-DGETFISA-D-----------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN 295 (513)
Q Consensus 235 v~~~~~~~-~~~~l~s~-~-----------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 295 (513)
...+++.+ +|+.+++- . ++.|..+|..++.... +.........++++|++..
T Consensus 128 p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~---------~~~~~~~p~gia~~~dg~~ 198 (322)
T 2fp8_A 128 LYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL---------LLKELHVPGGAEVSADSSF 198 (322)
T ss_dssp EEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE---------EEEEESCCCEEEECTTSSE
T ss_pred cceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE---------eccCCccCcceEECCCCCE
Confidence 56788888 88766654 2 2668888876443211 1111233567999999833
Q ss_pred EEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-----------CeEE
Q 010287 296 MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-----------MTLK 364 (513)
Q Consensus 296 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-----------~~v~ 364 (513)
++++-...+.|.+|++...... ....+.. ..+ ...++++++|.+.++... +.|.
T Consensus 199 lyv~d~~~~~I~~~~~~~~~~~--~~~~~~~------------~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~ 263 (322)
T 2fp8_A 199 VLVAEFLSHQIVKYWLEGPKKG--TAEVLVK------------IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGI 263 (322)
T ss_dssp EEEEEGGGTEEEEEESSSTTTT--CEEEEEE------------CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEE
T ss_pred EEEEeCCCCeEEEEECCCCcCC--ccceEEe------------CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEE
Confidence 5555566789999998753211 0111111 013 677899999987776422 4577
Q ss_pred EEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 365 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 365 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
.+|.. ++.+..+....... +..++.+++ .+++++++...++.|..+++...
T Consensus 264 ~~d~~--G~~~~~~~~~~g~~-----------~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 264 KFDEF--GNILEVIPLPPPFA-----------GEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EECTT--SCEEEEEECCTTTT-----------TSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred EECCC--CCEEEEEECCCCCc-----------cccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 77754 66666665433210 011235555 36666666667888999988643
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.54 E-value=7.3e-05 Score=64.51 Aligned_cols=194 Identities=12% Similarity=-0.008 Sum_probs=122.2
Q ss_pred CCeEEEEeccCCCEEEEE-c--CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 010287 233 YHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 309 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~-~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vw 309 (513)
.....+.|++++..+++. . ++.|.++|+.+++....+ .+..+ .....+++.. ..++++.-.++.+.++
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i------~l~~~-~fgeGi~~~g--~~lyv~t~~~~~v~vi 91 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIH------KMDDS-YFGEGLTLLN--EKLYQVVWLKNIGFIY 91 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEE------ECCTT-CCEEEEEEET--TEEEEEETTCSEEEEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEE------ecCCC-cceEEEEEeC--CEEEEEEecCCEEEEE
Confidence 346799999987555554 2 689999999987755432 12221 1223455553 2667777779999999
Q ss_pred EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccccc
Q 010287 310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKL 388 (513)
Q Consensus 310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 388 (513)
|..+.+.. ..+... .+ ....+++||+.+++++. +.|.++|..+ .+.+..+........
T Consensus 92 D~~t~~v~----~~i~~g-~~-------------~g~glt~Dg~~l~vs~gs~~l~viD~~t-~~v~~~I~Vg~~~~p-- 150 (266)
T 2iwa_A 92 DRRTLSNI----KNFTHQ-MK-------------DGWGLATDGKILYGSDGTSILYEIDPHT-FKLIKKHNVKYNGHR-- 150 (266)
T ss_dssp ETTTTEEE----EEEECC-SS-------------SCCEEEECSSSEEEECSSSEEEEECTTT-CCEEEEEECEETTEE--
T ss_pred ECCCCcEE----EEEECC-CC-------------CeEEEEECCCEEEEECCCCeEEEEECCC-CcEEEEEEECCCCcc--
Confidence 99887763 333221 00 11336678887777655 9999999986 677766654332110
Q ss_pred ccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCC-------------CCceeEEEEcCCCC-c
Q 010287 389 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-------------KNPMRRQVQTPSRP-S 454 (513)
Q Consensus 389 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~-~ 454 (513)
+...+.+.|. ++...+....++.|.+.|+.+++. ...+... ......++++|+++ +
T Consensus 151 --------~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V-~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l 220 (266)
T 2iwa_A 151 --------VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTL-LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRI 220 (266)
T ss_dssp --------CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCE-EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred --------cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcE-EEEEECCCcccccccccccccCceEEEEEcCCCCEE
Confidence 0012367787 775555555688999999998843 3333321 12457899999986 4
Q ss_pred eeeecCCCeEEE
Q 010287 455 RPLGSLSGVVRR 466 (513)
Q Consensus 455 l~~~~~d~~i~~ 466 (513)
++++.....+..
T Consensus 221 fVTgk~~~~v~~ 232 (266)
T 2iwa_A 221 FVTGKLWPKLFE 232 (266)
T ss_dssp EEEETTCSEEEE
T ss_pred EEECCCCCeEEE
Confidence 566666666655
No 242
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.54 E-value=3.3e-05 Score=71.74 Aligned_cols=179 Identities=14% Similarity=0.137 Sum_probs=95.6
Q ss_pred CEEEEE-cCCeEEEEEcCCCcceeeecccCccc---cccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCccccccc
Q 010287 245 ETFISA-DDLRINLWNLEISNQSFNIVDVKPAN---MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 320 (513)
Q Consensus 245 ~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 320 (513)
..++.+ .++.+..+|..+++...+.....+.. +............. + ..++.++.++.+..+|.++++...+
T Consensus 189 ~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-~--~~v~~~~~~g~l~~~d~~tG~~~w~- 264 (376)
T 3q7m_A 189 GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV-N--GVVFALAYNGNLTALDLRSGQIMWK- 264 (376)
T ss_dssp TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE-T--TEEEEECTTSCEEEEETTTCCEEEE-
T ss_pred CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE-C--CEEEEEecCcEEEEEECCCCcEEee-
Confidence 355555 68899999998877655431100000 00000000011111 2 4567778899999999998876322
Q ss_pred ceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccc
Q 010287 321 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 399 (513)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (513)
... .....+.. ++..++.++ ++.|..+|..+ ++.+..........
T Consensus 265 ---~~~--------------~~~~~~~~--~~~~l~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~-------------- 310 (376)
T 3q7m_A 265 ---REL--------------GSVNDFIV--DGNRIYLVDQNDRVMALTIDG-GVTLWTQSDLLHRL-------------- 310 (376)
T ss_dssp ---ECC--------------CCEEEEEE--ETTEEEEEETTCCEEEEETTT-CCEEEEECTTTTSC--------------
T ss_pred ---ccC--------------CCCCCceE--ECCEEEEEcCCCeEEEEECCC-CcEEEeecccCCCc--------------
Confidence 111 12333333 355566555 48999999986 66554443111100
Q ss_pred eeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeE-EEEcCCCCceeeecCCCeEEE
Q 010287 400 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRR-QVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 400 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~i~~ 466 (513)
...... .+..|+.++.+|.|+++|..+++. ..........+.. ... .+..|..++.+|.+..
T Consensus 311 ~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~-~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~ 373 (376)
T 3q7m_A 311 LTSPVL--YNGNLVVGDSEGYLHWINVEDGRF-VAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYS 373 (376)
T ss_dssp CCCCEE--ETTEEEEECTTSEEEEEETTTCCE-EEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEE
T ss_pred ccCCEE--ECCEEEEEeCCCeEEEEECCCCcE-EEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEE
Confidence 002222 246788889999999999998843 3333332222221 122 2445666667776654
No 243
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.51 E-value=0.00026 Score=60.74 Aligned_cols=176 Identities=11% Similarity=0.132 Sum_probs=96.0
Q ss_pred eEEEEeccCCCEEEEE-cCCeEEEEEcCCCcce--eeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287 235 INSISNNSDGETFISA-DDLRINLWNLEISNQS--FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 311 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~ 311 (513)
.-.+++.+++.++++. .++.+.++++...... ....... ............++|+|.+ +.|.++.+.....+|.+
T Consensus 72 ~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~-~~~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~~ 149 (255)
T 3qqz_A 72 LETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIP-LQESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYKV 149 (255)
T ss_dssp EEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECC-CSSCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEEE
T ss_pred hHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccc-cccccccCCcceEEEeCCC-CEEEEEECcCCceEEEE
Confidence 5678888888777776 5888999988755431 1111110 0011234557899999998 55555666555566655
Q ss_pred CCcccccccceeeccccCCCCccccccccccEEEEEEeecCC-EEEEEeC-CeEEEEEccCCCCCeeeeecccccccccc
Q 010287 312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLC 389 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
. +......+...+...-. -......+.+++++|... +++..+. ..|.++|.. ++++..+......-.-..
T Consensus 150 ~-g~~~~~~l~i~~~~~~~-----~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--g~~~~~~~L~~g~~~l~~ 221 (255)
T 3qqz_A 150 N-GLLSSNELHISKDKALQ-----RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV--GEVIGEMSLTKGSRGLSH 221 (255)
T ss_dssp E-STTCSSCCEEEECHHHH-----HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT--CCEEEEEECSTTGGGCSS
T ss_pred c-ccccCCceeeecchhhc-----cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC--CCEEEEEEcCCccCCccc
Confidence 4 21111111211110000 001123578899999554 4444544 889999976 666666554432100000
Q ss_pred cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecC
Q 010287 390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 427 (513)
Q Consensus 390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 427 (513)
.+..--.++|.++|+..++ ++.+.++.|...
T Consensus 222 ------~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~~ 252 (255)
T 3qqz_A 222 ------NIKQAEGVAMDASGNIYIV-SEPNRFYRFTPQ 252 (255)
T ss_dssp ------CCCSEEEEEECTTCCEEEE-ETTTEEEEEEC-
T ss_pred ------ccCCCCeeEECCCCCEEEE-cCCceEEEEEec
Confidence 0001127999999985444 777777776543
No 244
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.49 E-value=4.5e-05 Score=76.40 Aligned_cols=173 Identities=13% Similarity=0.129 Sum_probs=98.8
Q ss_pred EEEeccCCCEEEEE-cCC-------------------eEEEEEcCCCcceeeecccCcccccccc-------CCeEEEEE
Q 010287 237 SISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANMEDLT-------EVITSAEF 289 (513)
Q Consensus 237 ~~~~~~~~~~l~s~-~d~-------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~ 289 (513)
.++++++...++.+ .++ .|..+|.++++...+.. ...|. .++....+
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~------~~~~~~wd~~~~~~~~~~d~ 307 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ------VTPGDSWDFTATQQITLAEL 307 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE------SSTTCCSCCCCCSCEEEEEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee------cCCCccccccCCCCcEEEEe
Confidence 56788877787776 454 49999999888766531 11121 23333333
Q ss_pred eCCCC--eEEEEEeCCCcEEEEEcCCcccccccc-------eeeccccCC---------C--Ccccccccc--ccEEEEE
Q 010287 290 HPTHC--NMLAYSSSKGSIRLIDMRQSALCDTHS-------KLFEEQEAP---------G--TRSFFTEII--ASISDIK 347 (513)
Q Consensus 290 ~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~-------~~~~~~~~~---------~--~~~~~~~~~--~~v~~i~ 347 (513)
..++. ..++.++.+|.+.++|..+++.....- ..++..... . ......+.. ..-..++
T Consensus 308 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a 387 (668)
T 1kv9_A 308 NIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMS 387 (668)
T ss_dssp EETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCE
T ss_pred ccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcce
Confidence 34551 268889999999999999998642100 000000000 0 000000000 0012367
Q ss_pred EeecCCEEEEE------------------------------------eC-CeEEEEEccCCCCCeeeeeccccccccccc
Q 010287 348 FARNGRHILSR------------------------------------DY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 390 (513)
Q Consensus 348 ~sp~~~~l~~~------------------------------------~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 390 (513)
++|+...++.. .. |.|..||+.+ ++.+-........
T Consensus 388 ~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~~~~------ 460 (668)
T 1kv9_A 388 FNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYPTHW------ 460 (668)
T ss_dssp EETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEESSSC------
T ss_pred ECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCCCCC------
Confidence 77766655531 12 6788888886 6665544433221
Q ss_pred ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc
Q 010287 391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 432 (513)
Q Consensus 391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 432 (513)
....+...+.++++++.|+.|+.||.++++.+
T Consensus 461 ----------~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 461 ----------NGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp ----------CCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ----------cCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 12345557788999999999999999988433
No 245
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.48 E-value=0.0016 Score=66.96 Aligned_cols=256 Identities=10% Similarity=-0.000 Sum_probs=138.3
Q ss_pred cCCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecc-------cCccccccccCCeEEEEEeCCCCeEEEEEeCCC
Q 010287 232 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD-------VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 304 (513)
Q Consensus 232 ~~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 304 (513)
...|.++...+++.+.+....+-|.++|..+.... .... .......-....|.++...+++ . |-.|+.++
T Consensus 257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g-~-lWigt~~~ 333 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFL-LPEQIRFEFIREGDNNYSLSNASARYIFQDSFN-N-IWIGTWGG 333 (781)
T ss_dssp CCCEEEEEECTTSEEEEEESSSCEEEEETTCC----------CEEECBCSSTTSBSSSCEEEEEECSSC-C-EEEEEBSS
T ss_pred CceEEEEEECCCCCEEEEeCCCCeEEECCCCCeee-eeeccccccccCCCCCCCCCCCeEEEEEEeCCC-C-EEEEecCC
Confidence 35688999888887666555456888888754321 1100 0000001134578999999887 4 44466677
Q ss_pred cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeeccccc
Q 010287 305 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHL 384 (513)
Q Consensus 305 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~ 384 (513)
-|..++..+... ..+......... ..-....|.++...++|.+.+...++-|..||... + ....+......
T Consensus 334 Gl~~~~~~~~~~-----~~~~~~~~~~~~--~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~-~-~~~~~~~~~~~ 404 (781)
T 3v9f_A 334 GINFISNAPPTF-----HTWSYSPTQMNE--SSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGK-R-VAIYNKENREL 404 (781)
T ss_dssp CEEEECSSCCSC-----EEEC----CCCS--SCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTE-E-EEECC-----C
T ss_pred eEEEeCCCCCcc-----eeeccCcccccc--CCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCC-C-eEEEccCCCCC
Confidence 788888765432 222110000000 00012468999888888766554456688888753 2 12221100000
Q ss_pred ccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceee-cCCCCceeEEEEcCCCCceeeecCCCe
Q 010287 385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL-EASKNPMRRQVQTPSRPSRPLGSLSGV 463 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~ 463 (513)
.-..|.++...+++.+.+ |+.++-|..++..++....... ......|.++...+++.+.+... .|.
T Consensus 405 -----------~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl 471 (781)
T 3v9f_A 405 -----------LSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGV 471 (781)
T ss_dssp -----------CCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEE
T ss_pred -----------CCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-Cce
Confidence 001245777777777554 6666678889887653221111 12346788888888877655443 665
Q ss_pred EEE-ecCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287 464 VRR-VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 464 i~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 512 (513)
.++ .....................|.++...+++++.+....++++.|+
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~ 521 (781)
T 3v9f_A 472 FVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYT 521 (781)
T ss_dssp EEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEEC
T ss_pred EEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEe
Confidence 555 1111111000000000114679999999999877766567887764
No 246
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.46 E-value=2.4e-05 Score=66.61 Aligned_cols=183 Identities=13% Similarity=0.065 Sum_probs=111.4
Q ss_pred CCeEEEEeccCCCEEEEE-cCC--eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 010287 233 YHINSISNNSDGETFISA-DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 309 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~-~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vw 309 (513)
.....+.|+ ++.++.+. .+| .|+++|+++++...++ .+.. ...-..++.. +..+++..-.++.+.+|
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~------~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~ 112 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQI------ELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVW 112 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEE------ECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEE------ecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEE
Confidence 335789998 56555554 454 9999999988765443 1211 1111234444 33666666679999999
Q ss_pred EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeeccccccccc
Q 010287 310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKL 388 (513)
Q Consensus 310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 388 (513)
|..+.+. +..+.... ....++++++.|+.++. +.|.++|..+ .+.+..+........
T Consensus 113 D~~t~~~----~~ti~~~~---------------eG~glt~dg~~L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g~~-- 170 (262)
T 3nol_A 113 NIRNLRQ----VRSFNYDG---------------EGWGLTHNDQYLIMSDGTPVLRFLDPES-LTPVRTITVTAHGEE-- 170 (262)
T ss_dssp ETTTCCE----EEEEECSS---------------CCCCEEECSSCEEECCSSSEEEEECTTT-CSEEEEEECEETTEE--
T ss_pred ECccCcE----EEEEECCC---------------CceEEecCCCEEEEECCCCeEEEEcCCC-CeEEEEEEeccCCcc--
Confidence 9998776 33333211 11334467887777654 8899999986 777777655321110
Q ss_pred ccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCC------------CCceeEEEEcCCCCcee
Q 010287 389 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS------------KNPMRRQVQTPSRPSRP 456 (513)
Q Consensus 389 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~ 456 (513)
+..+..+.|. +|+..+..-.++.|.+.|..+++. ...+... ..-.+.++++|+++.|.
T Consensus 171 --------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V-~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lf 240 (262)
T 3nol_A 171 --------LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKV-TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLF 240 (262)
T ss_dssp --------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBE-EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEE
T ss_pred --------ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcE-EEEEECCcCccccccccCcCCceEEEEEcCCCCEEE
Confidence 0112246676 776555555788999999998843 3333221 12347899999866554
Q ss_pred e
Q 010287 457 L 457 (513)
Q Consensus 457 ~ 457 (513)
.
T Consensus 241 V 241 (262)
T 3nol_A 241 V 241 (262)
T ss_dssp E
T ss_pred E
Confidence 3
No 247
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.46 E-value=0.00072 Score=60.59 Aligned_cols=192 Identities=12% Similarity=0.064 Sum_probs=104.2
Q ss_pred eEEEEeccCCCEEEEE-cC--CeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287 235 INSISNNSDGETFISA-DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 311 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~-~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~ 311 (513)
+.++++.++++++++. .. ..|..++..+++. ..+.. +. .......++..+++ ..+++-..++.|.++|.
T Consensus 74 p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~-~~~~~-----~~-~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~ 145 (306)
T 2p4o_A 74 VSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV-ETLLT-----LP-DAIFLNGITPLSDT-QYLTADSYRGAIWLIDV 145 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE-EEEEE-----CT-TCSCEEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred ceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE-EEEEe-----CC-CccccCcccccCCC-cEEEEECCCCeEEEEeC
Confidence 6789999999876665 32 2466677665442 22211 11 12223455555554 55555556889999997
Q ss_pred CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCC--eeeeecccccccc
Q 010287 312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGP--VATFQVHEHLRPK 387 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~--~~~~~~~~~~~~~ 387 (513)
.++... +......-.. ....+.......+ +|++..|+.++. +.|..|++...+.. ...+.....
T Consensus 146 ~~~~~~---v~~~~~~~~~---~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~---- 213 (306)
T 2p4o_A 146 VQPSGS---IWLEHPMLAR---SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTN---- 213 (306)
T ss_dssp TTTEEE---EEEECGGGSC---SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCC----
T ss_pred CCCcEe---EEEECCcccc---ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCC----
Confidence 653210 0000000000 0000001234455 889988777653 89999998742221 111110000
Q ss_pred cccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc-ceeecCCCCceeEEEEc---CCCCceeeec
Q 010287 388 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-STTLEASKNPMRRQVQT---PSRPSRPLGS 459 (513)
Q Consensus 388 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~---~~~~~l~~~~ 459 (513)
...++++++|+++++....+.|.+++.. +... ...+........+++|. |+++.|...+
T Consensus 214 ------------P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 214 ------------IDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp ------------CSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred ------------CCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence 1278999999987777778899999976 4221 11233333456788898 7876655443
No 248
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.45 E-value=6.4e-08 Score=89.72 Aligned_cols=175 Identities=7% Similarity=-0.006 Sum_probs=85.5
Q ss_pred CCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccc
Q 010287 243 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 321 (513)
Q Consensus 243 ~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 321 (513)
++..++++ .|+.|+.||..+++...+.. . ..+.+..+..++ .++++++.||.|..||..+++...+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~--------~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~-- 74 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK--------E--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTK-- 74 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEE--------C--CCSCCCC------CCEEECTTTCCEEEC-----CCSEE--
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEec--------C--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeee--
Confidence 45667776 79999999999888766531 1 233333344565 6777778999999999988876322
Q ss_pred eeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecccccccccccccccCCccce
Q 010287 322 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 400 (513)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 400 (513)
+...... .. ...++ +. ++..+++++ ++.|+.||..+ ++.+..+..+.
T Consensus 75 --~~~~~~~-----~~-~~sp~----~~-~~~~v~~g~~dg~v~a~D~~t-G~~~w~~~~~~------------------ 122 (369)
T 2hz6_A 75 --LPFTIPE-----LV-QASPC----RS-SDGILYMGKKQDIWYVIDLLT-GEKQQTLSSAF------------------ 122 (369)
T ss_dssp --CSCCHHH-----HH-TTCSC----C------CCCCEEEEEEEEECCC-------------------------------
T ss_pred --eeccCcc-----cc-ccCce----Ee-cCCEEEEEeCCCEEEEEECCC-CcEEEEecCCC------------------
Confidence 1110000 00 00111 11 233445544 58999999987 77766554432
Q ss_pred eeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCC---CceeeecCCCeEEE
Q 010287 401 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR---PSRPLGSLSGVVRR 466 (513)
Q Consensus 401 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~~ 466 (513)
...++|++..+++++.|+.|+.||..+++.+ -.+..+ .....++..+. ..+++++.||.+..
T Consensus 123 -~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~-W~~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a 187 (369)
T 2hz6_A 123 -ADSLSPSTSLLYLGRTEYTITMYDTKTRELR-WNATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVT 187 (369)
T ss_dssp -----------EEEEEEEEEEECCCSSSSSCC-CEEEEE--EECCBCCCCCTTCCCCEEEEETSCEEEE
T ss_pred -cccccccCCEEEEEecCCEEEEEECCCCCEE-EeEecc--cccCccccCCccccceEEEECCCCEEEE
Confidence 1235568888999999999999999988433 222211 11222333332 45667778888887
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.44 E-value=4.2e-05 Score=65.13 Aligned_cols=187 Identities=11% Similarity=0.060 Sum_probs=112.5
Q ss_pred eEEEEEeCCCCeEEEEEeCCC--cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--
Q 010287 284 ITSAEFHPTHCNMLAYSSSKG--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-- 359 (513)
Q Consensus 284 i~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-- 359 (513)
...+.|+ ++ .++.+.+.+| .|+++|+.+++... ..... .........+++..|...+
T Consensus 45 tqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~----~~~l~-------------~~~FgeGit~~g~~ly~ltw~ 105 (262)
T 3nol_A 45 TEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQ----QIELG-------------KRYFGEGISDWKDKIVGLTWK 105 (262)
T ss_dssp EEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEE----EEECC-------------TTCCEEEEEEETTEEEEEESS
T ss_pred cceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEE----EEecC-------------CccceeEEEEeCCEEEEEEee
Confidence 4688898 66 7888888876 99999999998733 22221 1222333344566666655
Q ss_pred CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecC-
Q 010287 360 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA- 438 (513)
Q Consensus 360 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~- 438 (513)
++.+.+||..+ .+.+.++..... ...+++|++.|+.+..++.|.++|..+.+.. ..++.
T Consensus 106 ~~~v~v~D~~t-~~~~~ti~~~~e------------------G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~-~~I~V~ 165 (262)
T 3nol_A 106 NGLGFVWNIRN-LRQVRSFNYDGE------------------GWGLTHNDQYLIMSDGTPVLRFLDPESLTPV-RTITVT 165 (262)
T ss_dssp SSEEEEEETTT-CCEEEEEECSSC------------------CCCEEECSSCEEECCSSSEEEEECTTTCSEE-EEEECE
T ss_pred CCEEEEEECcc-CcEEEEEECCCC------------------ceEEecCCCEEEEECCCCeEEEEcCCCCeEE-EEEEec
Confidence 49999999997 888888775432 2234457777776666788999999987433 33332
Q ss_pred -CCCc---eeEEEEcCCCCceeeecCCCeEEEecCC--CC-CccccCCc------cccccCCeeEEEEeCCCCEEEEEcC
Q 010287 439 -SKNP---MRRQVQTPSRPSRPLGSLSGVVRRVKGA--DN-SALDANGN------AFDFSMKLLHLAWHPSENSIACAAS 505 (513)
Q Consensus 439 -~~~~---v~~~~~~~~~~~l~~~~~d~~i~~~~~~--~~-~~~~~~~~------~~~~~~~i~~~~~sp~~~~la~~~~ 505 (513)
...+ ++.+.+. +|+..+..-.+..|.+++.. +. ....+..- ...-....+.+||+|+++.|.+++.
T Consensus 166 ~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 166 AHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred cCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 2223 2345555 66666665555555552111 11 10011100 0111345689999999998887775
Q ss_pred CcEEE
Q 010287 506 NSLYM 510 (513)
Q Consensus 506 ~~~~i 510 (513)
.-=.+
T Consensus 245 ~Wp~~ 249 (262)
T 3nol_A 245 LWPKV 249 (262)
T ss_dssp TCSEE
T ss_pred CCCce
Confidence 43333
No 250
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.39 E-value=7.4e-05 Score=63.64 Aligned_cols=184 Identities=11% Similarity=-0.002 Sum_probs=113.0
Q ss_pred cCCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287 232 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 310 (513)
Q Consensus 232 ~~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd 310 (513)
......+.|+. +.++.+. .+|.|+++|+++++...++ +. . ...-..+++. +..+++..-.++.+.+||
T Consensus 54 ~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~-----~-~~FgeGit~~--g~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 54 NAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME--RL-----G-NIFAEGLASD--GERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp TCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE--EC-----T-TCCEEEEEEC--SSCEEEEESSSCEEEEEE
T ss_pred ccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE--CC-----C-CcceeEEEEe--CCEEEEEEccCCEEEEEE
Confidence 34457888874 4444444 6888999999988765442 11 1 1111234444 336777777799999999
Q ss_pred cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecccccccccc
Q 010287 311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLC 389 (513)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
..+.+.. ..+.... . ...+++|++.|+.++. +.|.++|..+ .+.+..+........
T Consensus 123 ~~Tl~~~----~ti~~~~-------------e--GwGLt~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~~--- 179 (268)
T 3nok_A 123 GMPPQRE----RTTRYSG-------------E--GWGLCYWNGKLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQP--- 179 (268)
T ss_dssp TTTTEEE----EEEECSS-------------C--CCCEEEETTEEEEECSSSEEEEECTTT-CCEEEEEECEETTEE---
T ss_pred CCcCcEE----EEEeCCC-------------c--eeEEecCCCEEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCcc---
Confidence 9988763 3333211 1 1233467888887664 9999999987 777777665432211
Q ss_pred cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecC-------------CCCceeEEEEcCCCCc-e
Q 010287 390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-------------SKNPMRRQVQTPSRPS-R 455 (513)
Q Consensus 390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~-l 455 (513)
+..+..+.|. +|+..+..-.++.|.+.|..+++ ....+.. ...-.+.+++.|+++. +
T Consensus 180 -------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~-V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlf 250 (268)
T 3nok_A 180 -------VELINELECA-NGVIYANIWHSSDVLEIDPATGT-VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIF 250 (268)
T ss_dssp -------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCB-EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEE
T ss_pred -------cccccccEEe-CCEEEEEECCCCeEEEEeCCCCc-EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEE
Confidence 1112356777 77655555568899999999884 3333321 1134578999997554 4
Q ss_pred eee
Q 010287 456 PLG 458 (513)
Q Consensus 456 ~~~ 458 (513)
++|
T Consensus 251 VTG 253 (268)
T 3nok_A 251 MTG 253 (268)
T ss_dssp EEE
T ss_pred EeC
Confidence 444
No 251
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.34 E-value=0.00085 Score=58.70 Aligned_cols=118 Identities=12% Similarity=0.124 Sum_probs=72.2
Q ss_pred eEEEEeccCCCEEEEE--c--CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287 235 INSISNNSDGETFISA--D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 310 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~--~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd 310 (513)
...++++|++..|..+ . .+.|..+++.... ...+. .........++++|++..++++-...+.|.++|
T Consensus 124 P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~-------~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~ 195 (267)
T 1npe_A 124 PRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILA-------QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN 195 (267)
T ss_dssp EEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEE-------CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEE-------ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence 5788999976655554 2 4688888876322 11111 112245789999998746667767788999999
Q ss_pred cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeec
Q 010287 311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQV 380 (513)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~ 380 (513)
+..... ...+... .....++. ++..|+.++ . +.|.++|..+ ++.+..+..
T Consensus 196 ~~g~~~----~~~~~~~-------------~~P~gi~~--d~~~lyva~~~~~~v~~~d~~~-g~~~~~i~~ 247 (267)
T 1npe_A 196 PAQPGR----RKVLEGL-------------QYPFAVTS--YGKNLYYTDWKTNSVIAMDLAI-SKEMDTFHP 247 (267)
T ss_dssp TTEEEE----EEEEECC-------------CSEEEEEE--ETTEEEEEETTTTEEEEEETTT-TEEEEEECC
T ss_pred cCCCce----EEEecCC-------------CCceEEEE--eCCEEEEEECCCCeEEEEeCCC-CCceEEEcc
Confidence 865432 1111111 22345654 355555554 3 8999999885 666666643
No 252
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.32 E-value=0.0019 Score=59.94 Aligned_cols=156 Identities=10% Similarity=0.056 Sum_probs=91.2
Q ss_pred eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC-CcEEEEEc
Q 010287 235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDM 311 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~vwd~ 311 (513)
...+++.+.+..|+.+ ..+.|.+.++..... ..+ +.........++++|.+..++.+-... +.|..+++
T Consensus 161 p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-~~l-------~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~ 232 (386)
T 3v65_B 161 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 232 (386)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-EEE-------ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-EEe-------ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence 3457788765555554 477888888763322 111 122235578999999764555555455 77888887
Q ss_pred CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecccccccccc
Q 010287 312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLC 389 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
..... ..+-. ........|+++|++..|+.++. +.|..+|+. +.....+.......
T Consensus 233 dG~~~-----~~~~~-----------~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~---- 290 (386)
T 3v65_B 233 DGSGR-----RIIAD-----------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQGLPH---- 290 (386)
T ss_dssp TSCSC-----EEEEC-----------SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT--SCSCEEEECSSCSS----
T ss_pred CCCCc-----EEEEE-----------CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC--CCeeEEEEECCCCC----
Confidence 54321 11110 01135788999998777776653 889999876 33322222111000
Q ss_pred cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc
Q 010287 390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 431 (513)
Q Consensus 390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 431 (513)
-..+++. .+.++++....+.|..++..++..
T Consensus 291 ----------P~giav~-~~~ly~td~~~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 291 ----------PFAITVF-EDSLYWTDWHTKSINSANKFTGKN 321 (386)
T ss_dssp ----------EEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred ----------ceEEEEE-CCEEEEeeCCCCeEEEEECCCCcc
Confidence 1267773 445555666778898888666633
No 253
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.32 E-value=0.00045 Score=61.94 Aligned_cols=234 Identities=7% Similarity=-0.005 Sum_probs=124.4
Q ss_pred CCeEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCC--cEEEE
Q 010287 233 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--SIRLI 309 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~vw 309 (513)
.....++|+++++++++. .++.|..||.... ....+ .....+..+++.+++ +++++..... .|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~--~~~~~--------~~~~~p~gia~~~dG-~l~vad~~~~~~~v~~~ 100 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHA--------TVEGKVSGLAFTSNG-DLVATGWNADSIPVVSL 100 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEE--------ECSSEEEEEEECTTS-CEEEEEECTTSCEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc--eEEEE--------eCCCCceeEEEcCCC-cEEEEeccCCcceEEEE
Confidence 346789999999877776 6899999998742 22211 113458899999998 6665554332 46667
Q ss_pred EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCC-Ceeeeecccccccc
Q 010287 310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSG-PVATFQVHEHLRPK 387 (513)
Q Consensus 310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~-~~~~~~~~~~~~~~ 387 (513)
|..+++.. ....... ......++..+++..+++-. .+.|+++|... +. .+............
T Consensus 101 d~~~g~~~----~~~~~~~-----------~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~-~~~~v~~~~~~~~~~~~ 164 (306)
T 2p4o_A 101 VKSDGTVE----TLLTLPD-----------AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ-PSGSIWLEHPMLARSNS 164 (306)
T ss_dssp ECTTSCEE----EEEECTT-----------CSCEEEEEESSSSEEEEEETTTTEEEEEETTT-TEEEEEEECGGGSCSST
T ss_pred cCCCCeEE----EEEeCCC-----------ccccCcccccCCCcEEEEECCCCeEEEEeCCC-CcEeEEEECCccccccc
Confidence 76666531 1111110 01233444445544444433 38888888653 21 11111100000000
Q ss_pred cccccccCCccceeeEEEeCCCCEEEEE-eCCCcEEEEecCCCCcc--ceeecCCCCceeEEEEcCCCCceeeecCCCeE
Q 010287 388 LCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAE--STTLEASKNPMRRQVQTPSRPSRPLGSLSGVV 464 (513)
Q Consensus 388 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 464 (513)
. ..+.....+ +|++++|+.+ ...+.|..|++...... ...+. .......+++.++|+++++....+.|
T Consensus 165 ~------~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V 235 (306)
T 2p4o_A 165 E------SVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSV 235 (306)
T ss_dssp T------CCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCE
T ss_pred c------CCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeE
Confidence 0 000111234 8888766654 46789999998742111 11111 11234578999999877776656666
Q ss_pred EEecCCCCCccccCCccccccCCeeEEEEe---CCCCEEEEEc
Q 010287 465 RRVKGADNSALDANGNAFDFSMKLLHLAWH---PSENSIACAA 504 (513)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s---p~~~~la~~~ 504 (513)
.++...... ............+++++|. ||++.|.+++
T Consensus 236 ~~~~~~G~~--~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 236 VRIAPDRST--TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp EEECTTCCE--EEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred EEECCCCCE--EEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence 663211100 0000000112568999999 8988777554
No 254
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.28 E-value=0.00029 Score=59.46 Aligned_cols=193 Identities=10% Similarity=0.066 Sum_probs=114.2
Q ss_pred eeEeeccccCCeEEEEeccCCCEEEEE-c--CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEE
Q 010287 224 RRIYAHAHDYHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS 300 (513)
Q Consensus 224 ~~~~~~~h~~~v~~~~~~~~~~~l~s~-~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 300 (513)
.+.+..........+.|+. +.++.+. . +..|+.+|+.+++...++ .+..+. .-..++... .+++...
T Consensus 12 ~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~------~l~~~~-fgeGi~~~~--~~ly~lt 81 (243)
T 3mbr_X 12 VKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA------EVPPPY-FGAGIVAWR--DRLIQLT 81 (243)
T ss_dssp EEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE------ECCTTC-CEEEEEEET--TEEEEEE
T ss_pred EEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE------eCCCCc-ceeEEEEeC--CEEEEEE
Confidence 3344333344567899986 4444544 3 469999999988755432 122111 112344443 3677777
Q ss_pred eCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeee
Q 010287 301 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQ 379 (513)
Q Consensus 301 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~ 379 (513)
-.++.+.+||..+.+. +..+.... ....+.+++..|+.++. +.|.++|..+ .+.+.++.
T Consensus 82 w~~~~v~v~D~~tl~~----~~ti~~~~---------------~Gwglt~dg~~L~vSdgs~~l~~iDp~t-~~~~~~I~ 141 (243)
T 3mbr_X 82 WRNHEGFVYDLATLTP----RARFRYPG---------------EGWALTSDDSHLYMSDGTAVIRKLDPDT-LQQVGSIK 141 (243)
T ss_dssp SSSSEEEEEETTTTEE----EEEEECSS---------------CCCEEEECSSCEEEECSSSEEEEECTTT-CCEEEEEE
T ss_pred eeCCEEEEEECCcCcE----EEEEeCCC---------------CceEEeeCCCEEEEECCCCeEEEEeCCC-CeEEEEEE
Confidence 7899999999998776 33333211 11233467777776554 8999999987 77777766
Q ss_pred cccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecC-------------CCCceeEE
Q 010287 380 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-------------SKNPMRRQ 446 (513)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------------~~~~v~~~ 446 (513)
....... +..+..+.+. +|+..+..-.+..|.+.|+.+++. ...+.. ...-.+.+
T Consensus 142 V~~~g~~----------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V-~~~idl~~l~~~~~~~~~~~~~vlNGI 209 (243)
T 3mbr_X 142 VTAGGRP----------LDNLNELEWV-NGELLANVWLTSRIARIDPASGKV-VAWIDLQALVPDADALTDSTNDVLNGI 209 (243)
T ss_dssp CEETTEE----------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBE-EEEEECGGGSTTTTSCCCTTSSCEEEE
T ss_pred EccCCcc----------cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCE-EEEEECCcCccccccccCCcCCceEEE
Confidence 5432110 1112355665 666555555678999999998843 333221 11245789
Q ss_pred EEcCCCCce-eee
Q 010287 447 VQTPSRPSR-PLG 458 (513)
Q Consensus 447 ~~~~~~~~l-~~~ 458 (513)
++.|+++.| ++|
T Consensus 210 A~d~~~~~lfVTG 222 (243)
T 3mbr_X 210 AFDAEHDRLFVTG 222 (243)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEcCCCCEEEEEC
Confidence 999976544 444
No 255
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.26 E-value=0.0025 Score=58.14 Aligned_cols=156 Identities=10% Similarity=0.063 Sum_probs=92.6
Q ss_pred eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC-CcEEEEEc
Q 010287 235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDM 311 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~vwd~ 311 (513)
...+++.+.+..|+.+ ..+.|.+.++...... .+ +.........++++|.+..++.+-... +.|..+++
T Consensus 118 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l-------~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-VL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EE-------ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE-EE-------EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 4578888765555554 4788999998743321 11 122234578999999764666665555 78888887
Q ss_pred CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecccccccccc
Q 010287 312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLC 389 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
..... ..+-. ........++++|++..|..++. +.|..+|+. +.....+.......
T Consensus 190 dG~~~-----~~~~~-----------~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d--G~~~~~~~~~~~~~---- 247 (349)
T 3v64_C 190 DGSGR-----RIIAD-----------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQGLPH---- 247 (349)
T ss_dssp TSCSC-----EESCC-----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSSCSS----
T ss_pred CCCCc-----EEEEE-----------CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC--CCceEEEEeCCCCC----
Confidence 54321 11110 01135788999998877777653 889999987 33322221111000
Q ss_pred cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc
Q 010287 390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 431 (513)
Q Consensus 390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 431 (513)
-..+++. .+..+++-...+.|..++..+++.
T Consensus 248 ----------P~giav~-~~~ly~td~~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 248 ----------PFAITVF-EDSLYWTDWHTKSINSANKFTGKN 278 (349)
T ss_dssp ----------EEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred ----------ceEEEEE-CCEEEEecCCCCeEEEEEccCCCc
Confidence 1266773 445555666778888888666643
No 256
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.24 E-value=0.00054 Score=57.83 Aligned_cols=185 Identities=10% Similarity=0.103 Sum_probs=107.8
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCC--cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe
Q 010287 282 EVITSAEFHPTHCNMLAYSSSKG--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 359 (513)
Q Consensus 282 ~~i~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~ 359 (513)
.....+.|++ + .++.+.+.+| .|+.+|+.+++.. ....... ........+++..|...+
T Consensus 21 ~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~----~~~~l~~-------------~~fgeGi~~~~~~ly~lt 81 (243)
T 3mbr_X 21 AFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRIL----QRAEVPP-------------PYFGAGIVAWRDRLIQLT 81 (243)
T ss_dssp CCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEE----EEEECCT-------------TCCEEEEEEETTEEEEEE
T ss_pred cccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEE----EEEeCCC-------------CcceeEEEEeCCEEEEEE
Confidence 4466899987 4 7888877764 8999999998873 2222221 122233334456666555
Q ss_pred --CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeec
Q 010287 360 --YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE 437 (513)
Q Consensus 360 --~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 437 (513)
++.+.+||..+ .+.+.++..... ...+.+|++.|+.+..++.|.++|..+.+.. ..++
T Consensus 82 w~~~~v~v~D~~t-l~~~~ti~~~~~------------------Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~-~~I~ 141 (243)
T 3mbr_X 82 WRNHEGFVYDLAT-LTPRARFRYPGE------------------GWALTSDDSHLYMSDGTAVIRKLDPDTLQQV-GSIK 141 (243)
T ss_dssp SSSSEEEEEETTT-TEEEEEEECSSC------------------CCEEEECSSCEEEECSSSEEEEECTTTCCEE-EEEE
T ss_pred eeCCEEEEEECCc-CcEEEEEeCCCC------------------ceEEeeCCCEEEEECCCCeEEEEeCCCCeEE-EEEE
Confidence 49999999987 788887765432 1233456776766667889999999987433 3333
Q ss_pred C--CCCc---eeEEEEcCCCCceeeecCCCeEEEecC--CCC-CccccC---Ccc----ccccCCeeEEEEeCCCCEEEE
Q 010287 438 A--SKNP---MRRQVQTPSRPSRPLGSLSGVVRRVKG--ADN-SALDAN---GNA----FDFSMKLLHLAWHPSENSIAC 502 (513)
Q Consensus 438 ~--~~~~---v~~~~~~~~~~~l~~~~~d~~i~~~~~--~~~-~~~~~~---~~~----~~~~~~i~~~~~sp~~~~la~ 502 (513)
. +..+ ++.+.+. +|+..+..-.+..|.+++. .+. ....+. ... ..-....+.+||+|+++.|.+
T Consensus 142 V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfV 220 (243)
T 3mbr_X 142 VTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFV 220 (243)
T ss_dssp CEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEE
T ss_pred EccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEE
Confidence 2 2222 2334443 5665555543444443111 111 000000 000 112346799999999888887
Q ss_pred EcCC
Q 010287 503 AASN 506 (513)
Q Consensus 503 ~~~~ 506 (513)
.+..
T Consensus 221 TGK~ 224 (243)
T 3mbr_X 221 TGKR 224 (243)
T ss_dssp EETT
T ss_pred ECCC
Confidence 7644
No 257
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.22 E-value=0.0075 Score=61.90 Aligned_cols=244 Identities=10% Similarity=-0.043 Sum_probs=136.5
Q ss_pred CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCcc---ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 010287 233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPA---NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 309 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vw 309 (513)
..|.++...++|.+.+...++-|..++...... ..+...+. ...-....|.++...+++ .+ -.|+.++-+..|
T Consensus 313 ~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~l-Wigt~~~Gl~~~ 388 (781)
T 3v9f_A 313 ASARYIFQDSFNNIWIGTWGGGINFISNAPPTF--HTWSYSPTQMNESSLSNKVVSSVCDDGQG-KL-WIGTDGGGINVF 388 (781)
T ss_dssp SCEEEEEECSSCCEEEEEBSSCEEEECSSCCSC--EEEC----CCCSSCCSSSCEEEEEECTTS-CE-EEEEBSSCEEEE
T ss_pred CeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcc--eeeccCccccccCCCCCcceEEEEEcCCC-CE-EEEeCCCcEEEE
Confidence 458899999888877666677788888764331 11110000 001123568999988887 44 456666778889
Q ss_pred EcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccc
Q 010287 310 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLC 389 (513)
Q Consensus 310 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
|..++.. ..+.... ......|.++...+++.+.+....+.|..+|..+ + ....+... ..
T Consensus 389 ~~~~~~~-----~~~~~~~--------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~-~-~~~~~~~~-~~----- 447 (781)
T 3v9f_A 389 ENGKRVA-----IYNKENR--------ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRL-K-KFQIIELE-KN----- 447 (781)
T ss_dssp ETTEEEE-----ECC-------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSS-C-EEEECCST-TT-----
T ss_pred ECCCCeE-----EEccCCC--------CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCC-C-cEEEeccC-CC-----
Confidence 9765432 1111100 0112568999888888776644346788888764 2 22222211 00
Q ss_pred cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceee-c---CCCCceeEEEEcCCCCceeeecCCCeEE
Q 010287 390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL-E---ASKNPMRRQVQTPSRPSRPLGSLSGVVR 465 (513)
Q Consensus 390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 465 (513)
....|.++...+++.+.+ |+. +-|..||..++....... . .....+.++...+++.+.+....+|..+
T Consensus 448 ------~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~ 519 (781)
T 3v9f_A 448 ------ELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGI 519 (781)
T ss_dssp ------CCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEE
T ss_pred ------CCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEE
Confidence 001145777777776544 455 458889987653321111 1 1135688888888888666554467666
Q ss_pred Ee-cCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcE-EEEe
Q 010287 466 RV-KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSL-YMYY 512 (513)
Q Consensus 466 ~~-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~-~i~~ 512 (513)
+- ....... +....--....|.++...++|++.+... +++ ..|+
T Consensus 520 ~~~~~~~~~~--~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d 565 (781)
T 3v9f_A 520 YTPDMQLVRK--FNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPS 565 (781)
T ss_dssp ECTTCCEEEE--ECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESC
T ss_pred EeCCCCeEEE--ccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEEC
Confidence 61 1111110 0000001245789999999998766554 777 6653
No 258
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.22 E-value=0.00033 Score=68.63 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=35.7
Q ss_pred CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc
Q 010287 361 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 432 (513)
Q Consensus 361 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 432 (513)
+.|..||+.+ ++.+-.+...... ....+...+..++.++.||.|+.||.++++.+
T Consensus 444 g~l~a~D~~t-G~~~W~~~~~~~~----------------~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 444 GQIRAFDLTT-GKAKWTKWEKFAA----------------WGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp EEEEEECTTT-CCEEEEEEESSCC----------------CSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CeEEEEECCC-CCEEEEecCCCCc----------------cceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence 6788888876 6665554432211 12223335667778999999999999998443
No 259
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.21 E-value=0.0005 Score=62.15 Aligned_cols=193 Identities=10% Similarity=0.020 Sum_probs=109.0
Q ss_pred eEEEEeccCCCEEEEE-cCCeEEEEEcCCCcceeeecccCcc------------ccccccCCeEEEEEeC-CCCeEEEEE
Q 010287 235 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA------------NMEDLTEVITSAEFHP-THCNMLAYS 300 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~------------~~~~~~~~i~~~~~~~-~~~~~l~~~ 300 (513)
..+++|+++++++.++ .++.|..|+..+.... .+...... ........+..+++.+ ++ ++++ +
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v-~ 97 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYI-V 97 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEE-E
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEE-E
Confidence 5678899999867777 7899999988743321 11000000 0001123578999998 65 5544 4
Q ss_pred eCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEEeC------------------C
Q 010287 301 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY------------------M 361 (513)
Q Consensus 301 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~~~------------------~ 361 (513)
...+.|..+|..++.. ..+..... .........+++.+ +|.+.++-.. +
T Consensus 98 d~~~~i~~~d~~~g~~-----~~~~~~~~-------~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g 165 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-----TQLATSVD-------GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTG 165 (322)
T ss_dssp ETTTEEEEECTTCEEC-----EEEESEET-------TEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred ECCCCEEEEeCCCCEE-----EEecccCC-------CCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCc
Confidence 4455588888765432 11111000 00013467899999 9987776321 5
Q ss_pred eEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEE-eCCCcEEEEecCCCCc-cceeecCC
Q 010287 362 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSA-ESTTLEAS 439 (513)
Q Consensus 362 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~-~~~~~~~~ 439 (513)
.|..||... ++ +..+...... -..++++|++++|+.+ +..+.|.+|++..... ....+...
T Consensus 166 ~v~~~d~~~-~~-~~~~~~~~~~---------------p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~ 228 (322)
T 2fp8_A 166 RLIKYDPST-KE-TTLLLKELHV---------------PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI 228 (322)
T ss_dssp EEEEEETTT-TE-EEEEEEEESC---------------CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC
T ss_pred eEEEEeCCC-CE-EEEeccCCcc---------------CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC
Confidence 677777653 32 2222111000 1278999999866655 5668999999875311 11111111
Q ss_pred CCceeEEEEcCCCCceeeecC
Q 010287 440 KNPMRRQVQTPSRPSRPLGSL 460 (513)
Q Consensus 440 ~~~v~~~~~~~~~~~l~~~~~ 460 (513)
.. ...+++.++|++.++...
T Consensus 229 ~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 229 PN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp SS-EEEEEECTTSCEEEEEEE
T ss_pred CC-CCCeEECCCCCEEEEecC
Confidence 12 567899999987666543
No 260
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.20 E-value=0.00014 Score=69.60 Aligned_cols=188 Identities=12% Similarity=0.090 Sum_probs=116.4
Q ss_pred CCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE-e-ecCCEEEEEe---------
Q 010287 291 PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF-A-RNGRHILSRD--------- 359 (513)
Q Consensus 291 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-s-p~~~~l~~~~--------- 359 (513)
+||..+++....+..|.+.|+.+.+. ...++.+.. .....+++ + |+++++++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~----~~ii~ip~g-----------~~phg~~~~~~p~~~~v~~~~~~~~p~~~d 163 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKC----DAILEIPNA-----------KGIHGLRPQKWPRSNYVFCNGEDETPLVND 163 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEE----EEEEECSSC-----------CSEEEEEECCSSBCSEEEEEECSCEESSCS
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceE----eeEEeCCCC-----------CCCcceeeeecCCCcEEEEecccccccCCC
Confidence 47734555555577899999998765 222222211 34678887 5 8999998873
Q ss_pred ---------C-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCC----------
Q 010287 360 ---------Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---------- 419 (513)
Q Consensus 360 ---------~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---------- 419 (513)
+ +.+.+.|..+ .+....+.....+. .++++|+|+++++.+.+.
T Consensus 164 g~~l~~~~~~~~~vtvID~~t-~~v~~qI~Vgg~pd----------------~~~~spdGk~~~vt~~~se~~~~i~~~~ 226 (595)
T 1fwx_A 164 GTNMEDVANYVNVFTAVDADK-WEVAWQVLVSGNLD----------------NCDADYEGKWAFSTSYNSEKGMTLPEMT 226 (595)
T ss_dssp SSSTTCGGGEEEEEEEEETTT-TEEEEEEEESSCCC----------------CEEECSSSSEEEEEESCTTCCSSHHHHT
T ss_pred CcccccccccCceEEEEECCC-CeEEEEEEeCCCcc----------------ceEECCCCCEEEEEecCcccCcchhhcc
Confidence 2 6889999986 66666665433221 578999999988877543
Q ss_pred ----------------------------cEEEEecCC--CCccceeecCCCCceeEEEEcCCCCceeee-cCCCeEEEec
Q 010287 420 ----------------------------LFRVFGCSE--GSAESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRRVK 468 (513)
Q Consensus 420 ----------------------------~i~vwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~~ 468 (513)
.|.+.|..+ +......+... .....+.++|||++++.+ ..+..|.+++
T Consensus 227 ~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid 305 (595)
T 1fwx_A 227 AAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLD 305 (595)
T ss_dssp CCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEE
T ss_pred ccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEE
Confidence 366667665 32212223222 234578999999987655 4577777732
Q ss_pred CCCC--------CccccCCccccccCCeeEEEEeCCCCEEEEEc--CCcEEEEe
Q 010287 469 GADN--------SALDANGNAFDFSMKLLHLAWHPSENSIACAA--SNSLYMYY 512 (513)
Q Consensus 469 ~~~~--------~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~--~~~~~i~~ 512 (513)
.... ...........-......++|+|+| .+.+.. ++.+.+|+
T Consensus 306 ~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwd 358 (595)
T 1fwx_A 306 VTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWN 358 (595)
T ss_dssp GGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEE
T ss_pred CcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEE
Confidence 2211 0000111122345778999999999 544444 77888875
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.19 E-value=0.00013 Score=62.08 Aligned_cols=182 Identities=12% Similarity=0.070 Sum_probs=109.2
Q ss_pred eEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--CC
Q 010287 284 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YM 361 (513)
Q Consensus 284 i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~~ 361 (513)
...+.|+. + .++.+.+.+|.|+++|+.+++...+. +.. ........+++..|...+ ++
T Consensus 57 tqGL~~~~-~-~Ly~stG~~g~v~~iD~~Tgkv~~~~---l~~---------------~~FgeGit~~g~~Ly~ltw~~~ 116 (268)
T 3nok_A 57 TQGLVFHQ-G-HFFESTGHQGTLRQLSLESAQPVWME---RLG---------------NIFAEGLASDGERLYQLTWTEG 116 (268)
T ss_dssp EEEEEEET-T-EEEEEETTTTEEEECCSSCSSCSEEE---ECT---------------TCCEEEEEECSSCEEEEESSSC
T ss_pred cceEEEEC-C-EEEEEcCCCCEEEEEECCCCcEEeEE---CCC---------------CcceeEEEEeCCEEEEEEccCC
Confidence 46888874 4 88899999999999999999874331 221 122222334455555544 49
Q ss_pred eEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecC--C
Q 010287 362 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA--S 439 (513)
Q Consensus 362 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~ 439 (513)
.+.+||..+ .+.+.++...... +.++ +|++.|+.+..++.|+++|..+.+. ...++. .
T Consensus 117 ~v~V~D~~T-l~~~~ti~~~~eG----------------wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v-~~~I~V~~~ 176 (268)
T 3nok_A 117 LLFTWSGMP-PQRERTTRYSGEG----------------WGLC--YWNGKLVRSDGGTMLTFHEPDGFAL-VGAVQVKLR 176 (268)
T ss_dssp EEEEEETTT-TEEEEEEECSSCC----------------CCEE--EETTEEEEECSSSEEEEECTTTCCE-EEEEECEET
T ss_pred EEEEEECCc-CcEEEEEeCCCce----------------eEEe--cCCCEEEEECCCCEEEEEcCCCCeE-EEEEEeCCC
Confidence 999999997 8888877653321 1344 5678887777789999999998743 333332 2
Q ss_pred CCc---eeEEEEcCCCCceeeecCCCeEEEecCC--CC-CccccCCc-------cccccCCeeEEEEeCCCCEEEEEcCC
Q 010287 440 KNP---MRRQVQTPSRPSRPLGSLSGVVRRVKGA--DN-SALDANGN-------AFDFSMKLLHLAWHPSENSIACAASN 506 (513)
Q Consensus 440 ~~~---v~~~~~~~~~~~l~~~~~d~~i~~~~~~--~~-~~~~~~~~-------~~~~~~~i~~~~~sp~~~~la~~~~~ 506 (513)
..+ ++.+.+. +|+..+..-.+..|.+++.. +. ....+..- ...-..-.+.+||+|+++.|.+.+..
T Consensus 177 g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 177 GQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp TEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred CcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 222 3445555 66666655445555542111 11 10001000 01113467899999998877766644
No 262
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.14 E-value=0.00017 Score=72.35 Aligned_cols=59 Identities=10% Similarity=-0.014 Sum_probs=38.6
Q ss_pred eEEEeCCCCEEEEEeCC-----------CcEEEEecCCCCccc-eeecCCCCceeEEEEcCCCCceeeecC
Q 010287 402 ECCLSGDGGRVATGSYS-----------NLFRVFGCSEGSAES-TTLEASKNPMRRQVQTPSRPSRPLGSL 460 (513)
Q Consensus 402 ~~~~s~~~~~l~~~~~d-----------g~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~ 460 (513)
.+...|++++++.|+.+ ..+.+||+.+..-.. ..+...........+.++++.++.|+.
T Consensus 460 ~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 460 TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 45677899999999854 468999998653221 112222222234556789999999885
No 263
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.11 E-value=0.0036 Score=63.72 Aligned_cols=72 Identities=14% Similarity=0.134 Sum_probs=41.5
Q ss_pred eEEEEeccCCCEEEEE-c---CCeEEEEEcCCCccee--eecccCccccccccCCeEEEEEeCCCCeEEEEEeCC--C--
Q 010287 235 INSISNNSDGETFISA-D---DLRINLWNLEISNQSF--NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--G-- 304 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~-~---d~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--g-- 304 (513)
...+.|+||+++|+.. . ...|.++|+.++.... .. ..........++.|+..+ .+++....+ +
T Consensus 273 ~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~------l~~~~~~~~~s~~~~~g~-~l~~~t~~~~a~~~ 345 (751)
T 2xe4_A 273 SAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEI------VRPREKGVRYDVQMHGTS-HLVILTNEGGAVNH 345 (751)
T ss_dssp EEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEE------SSCCCTTCCEEEEEETTT-EEEEEECTTTCTTC
T ss_pred EEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEE------eecCCCCceEEEeeeeCC-EEEEEeCCCCCCCc
Confidence 4578899999988864 2 5578888987653211 11 112233445666665544 555555544 3
Q ss_pred cEEEEEcCC
Q 010287 305 SIRLIDMRQ 313 (513)
Q Consensus 305 ~i~vwd~~~ 313 (513)
.|..+|+.+
T Consensus 346 ~L~~~d~~~ 354 (751)
T 2xe4_A 346 KLLIAPRGQ 354 (751)
T ss_dssp EEEEEETTS
T ss_pred EEEEEcCCC
Confidence 455556543
No 264
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.11 E-value=0.0018 Score=63.46 Aligned_cols=65 Identities=8% Similarity=0.040 Sum_probs=38.2
Q ss_pred CeEEEEEcCCCcceeeecccCcc--ccccccCCeEEEEEe-CCCC--eEEEEEeCCCcEEEEEcCCccccc
Q 010287 253 LRINLWNLEISNQSFNIVDVKPA--NMEDLTEVITSAEFH-PTHC--NMLAYSSSKGSIRLIDMRQSALCD 318 (513)
Q Consensus 253 ~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~-~~~~--~~l~~~~~dg~i~vwd~~~~~~~~ 318 (513)
+.|.-+|.++++........... .+.....++. +... .++. ..++.++.+|.+.++|.++++...
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 360 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQN 360 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEec
Confidence 57999999988876653100000 0001112222 2222 3552 367889999999999999988643
No 265
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.08 E-value=0.004 Score=53.36 Aligned_cols=214 Identities=11% Similarity=0.098 Sum_probs=119.1
Q ss_pred ccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEE
Q 010287 276 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 355 (513)
Q Consensus 276 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l 355 (513)
.+.+-...+..++|+|++..++++...++.|...|.. ++. .+.+.... ......|++.+++.++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v----~~~i~l~g-----------~~D~EGIa~~~~g~~~ 84 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL----IRTIPLDF-----------VKDLETIEYIGDNQFV 84 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE----EEEEECSS-----------CSSEEEEEECSTTEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE----EEEEecCC-----------CCChHHeEEeCCCEEE
Confidence 3445556799999999875677778889999999986 554 22221110 0347788898888877
Q ss_pred EEEeC-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCC--CCcc
Q 010287 356 LSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE--GSAE 432 (513)
Q Consensus 356 ~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~--~~~~ 432 (513)
++... +.+.++++...+. +.......-. +.....+. +...++|+|+++.|+++.......+|.+.. ....
T Consensus 85 vs~E~~~~l~~~~v~~~~~-i~~~~~~~~~---~~~~~~N~---g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~ 157 (255)
T 3qqz_A 85 ISDERDYAIYVISLTPNSE-VKILKKIKIP---LQESPTNC---GFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNE 157 (255)
T ss_dssp EEETTTTEEEEEEECTTCC-EEEEEEEECC---CSSCCCSS---CCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSC
T ss_pred EEECCCCcEEEEEcCCCCe-eeeeeeeccc---cccccccC---CcceEEEeCCCCEEEEEECcCCceEEEEcccccCCc
Confidence 76544 8999999875332 2211111100 00001111 234899999998777777655555555541 1011
Q ss_pred ceeec-------CCCCceeEEEEcCCCCce-eeecCCCeEEE--ecCCCCCccccCCccccc---cCCeeEEEEeCCCCE
Q 010287 433 STTLE-------ASKNPMRRQVQTPSRPSR-PLGSLSGVVRR--VKGADNSALDANGNAFDF---SMKLLHLAWHPSENS 499 (513)
Q Consensus 433 ~~~~~-------~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~--~~~~~~~~~~~~~~~~~~---~~~i~~~~~sp~~~~ 499 (513)
...+. .+......+++.|....+ +....++.+-. .++.......+.....+. -.....|+|.|+|++
T Consensus 158 l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l 237 (255)
T 3qqz_A 158 LHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI 237 (255)
T ss_dssp CEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE
T ss_pred eeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCE
Confidence 11111 123345688888765543 33334444433 122111111111111111 135789999999997
Q ss_pred EEEEcCCcEEEEe
Q 010287 500 IACAASNSLYMYY 512 (513)
Q Consensus 500 la~~~~~~~~i~~ 512 (513)
.+++=.|-++.|.
T Consensus 238 yIvsE~n~~y~f~ 250 (255)
T 3qqz_A 238 YIVSEPNRFYRFT 250 (255)
T ss_dssp EEEETTTEEEEEE
T ss_pred EEEcCCceEEEEE
Confidence 7776577666664
No 266
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.08 E-value=0.002 Score=63.15 Aligned_cols=28 Identities=4% Similarity=0.048 Sum_probs=22.4
Q ss_pred CceEEEeecCCeEEEEEccCceeeeeec
Q 010287 126 SALYLLSTNDKTIKLWKVQEKKVKKVFD 153 (513)
Q Consensus 126 ~~~l~s~s~d~~i~vw~~~~~~~~~~~~ 153 (513)
+..++.++.|+.|..+|..+++......
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~ 142 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVE 142 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEec
Confidence 3478888889999999999998766543
No 267
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.08 E-value=0.0012 Score=66.07 Aligned_cols=209 Identities=9% Similarity=0.038 Sum_probs=100.4
Q ss_pred eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-CC-----CcE
Q 010287 235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SK-----GSI 306 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d-----g~i 306 (513)
..++++..++++++.| .+..+.+||..+.. ..... .+..... -.+++..+++ ++++.|+ .+ ..+
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~--W~~~~----~~~~~R~-~~s~~~~~dg-~iyv~GG~~~~~~~~~~~ 316 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS--WIPGP----DMQVARG-YQSSATMSDG-RVFTIGGSWSGGVFEKNG 316 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTE--EEECC----CCSSCCS-SCEEEECTTS-CEEEECCCCCSSSCCCCE
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCc--eeECC----CCCcccc-ccceEEecCC-eEEEEeCcccCCcccccc
Confidence 3456778889998887 36789999988543 21110 1111111 2345566777 8888888 44 568
Q ss_pred EEEEcCCcccccccce-eeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccc
Q 010287 307 RLIDMRQSALCDTHSK-LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLR 385 (513)
Q Consensus 307 ~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~ 385 (513)
.+||..+......... ....... ... ....+.+.+..+.. .++..+..+....+..||... ..............
T Consensus 317 e~yd~~t~~W~~~~~~~~~p~~~~-~~~-~~~~~~~~iyv~Gg-~~g~~~~~~~~~~v~~yd~~~-~~w~~~~~~~~~~~ 392 (656)
T 1k3i_A 317 EVYSPSSKTWTSLPNAKVNPMLTA-DKQ-GLYRSDNHAWLFGW-KKGSVFQAGPSTAMNWYYTSG-SGDVKSAGKRQSNR 392 (656)
T ss_dssp EEEETTTTEEEEETTSCSGGGCCC-CTT-GGGTTTCSCCEEEC-GGGCEEECCSSSEEEEEECST-TCEEEEEEECEETT
T ss_pred eEeCCCCCcceeCCCccccccccc-ccc-ceeecCCceEEEEC-CCCcEEEecCccceeeeecCC-cceeecCCcccccc
Confidence 9999877542110000 0000000 000 00001112221111 133433333336788899875 33222221111000
Q ss_pred cccccccccCCccceeeEEEeC-CCCEEEEEeCCC-----------cEEEEecCCCCcccee-ecCCCC-ceeEEEEcCC
Q 010287 386 PKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSN-----------LFRVFGCSEGSAESTT-LEASKN-PMRRQVQTPS 451 (513)
Q Consensus 386 ~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg-----------~i~vwd~~~~~~~~~~-~~~~~~-~v~~~~~~~~ 451 (513)
.... ... .-.++.|.. ++++++.|+.++ .|.+||..+..-.... -..... .....+..|+
T Consensus 393 ~~~~-----~~~-~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~ 466 (656)
T 1k3i_A 393 GVAP-----DAM-CGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPD 466 (656)
T ss_dssp EECC-----CCB-TCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTT
T ss_pred ccCC-----CCC-CCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCC
Confidence 0000 000 011444543 777888887543 6778888765322111 011111 1234567789
Q ss_pred CCceeeecCC
Q 010287 452 RPSRPLGSLS 461 (513)
Q Consensus 452 ~~~l~~~~~d 461 (513)
++.++.|+.+
T Consensus 467 g~i~v~GG~~ 476 (656)
T 1k3i_A 467 GSTFITGGQR 476 (656)
T ss_dssp SCEEEECCBS
T ss_pred CCEEEECCcc
Confidence 9999999865
No 268
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.05 E-value=0.0002 Score=72.97 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=71.1
Q ss_pred CeEEEEec-cCCCEEEEE-c-CC----eEEEEEcCCC-cceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC--
Q 010287 234 HINSISNN-SDGETFISA-D-DL----RINLWNLEIS-NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-- 303 (513)
Q Consensus 234 ~v~~~~~~-~~~~~l~s~-~-d~----~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-- 303 (513)
.+...+|| |||++|+.+ + +| +|+++|+.++ +.... .+.. ....+.|+||+ +.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-------~~~~---~~~~~~WspDg-~~l~y~~~d~~ 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-------KVSG---TNGEIVWGPDH-TSLFYVTKDET 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-------CEEE---ECSCCEECSST-TEEEEEEECTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-------cccC---ceeeEEEecCC-CEEEEEEECCC
Confidence 57789999 999998865 2 32 4999999876 42211 1111 13468899999 556555554
Q ss_pred ---CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe---C-CeEEEEEccC
Q 010287 304 ---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD---Y-MTLKLWDINM 370 (513)
Q Consensus 304 ---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~---~-~~v~iwd~~~ 370 (513)
..|.++++.++.... ...+.... ......+.|||||++|+... . ..|.++|+..
T Consensus 244 ~~~~~v~~~~lgt~~~~~--~lv~~~~~-----------~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 244 LRENKVWRHVMGKLQSED--VCLYEEHN-----------PLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp CCEEEEEEEETTSCGGGC--EEEEECCC-----------TTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred CCCCEEEEEECCCCchhc--EEEEecCC-----------CceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 257777776654211 12222111 12456789999999888633 2 6788888875
No 269
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.96 E-value=0.0071 Score=59.30 Aligned_cols=75 Identities=11% Similarity=0.125 Sum_probs=46.9
Q ss_pred EEEeccCCCEEEEE-cC----------------CeEEEEEcCCCcceeeecccCccccccc--------cCCeEEEEEe-
Q 010287 237 SISNNSDGETFISA-DD----------------LRINLWNLEISNQSFNIVDVKPANMEDL--------TEVITSAEFH- 290 (513)
Q Consensus 237 ~~~~~~~~~~l~s~-~d----------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~--------~~~i~~~~~~- 290 (513)
.+++.+....++.+ .+ +.|.-+|.++++..... ....| ..++. +...
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~------q~~~~d~wd~d~~~~p~l-~d~~~ 317 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGY------QKTPHDEWDYAGVNVMML-SEQKD 317 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEE------ESSTTCSSCCCCCCCCEE-EEEEC
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEe------ecCCCccccccCCCccEE-Eeccc
Confidence 34556666677666 33 37999999988776543 11222 12222 2222
Q ss_pred CCCC--eEEEEEeCCCcEEEEEcCCccccc
Q 010287 291 PTHC--NMLAYSSSKGSIRLIDMRQSALCD 318 (513)
Q Consensus 291 ~~~~--~~l~~~~~dg~i~vwd~~~~~~~~ 318 (513)
.++. ..++.++.+|.+.++|.++++...
T Consensus 318 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 318 KDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp TTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred cCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 3442 367778899999999999988653
No 270
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.90 E-value=0.0098 Score=56.25 Aligned_cols=216 Identities=14% Similarity=0.036 Sum_probs=110.4
Q ss_pred CeEEEEe-------ccCCCEEEEE-c-CC------eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEE
Q 010287 234 HINSISN-------NSDGETFISA-D-DL------RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA 298 (513)
Q Consensus 234 ~v~~~~~-------~~~~~~l~s~-~-d~------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 298 (513)
....++| +++++.|+.+ . ++ .|.+++...........+. ..+.. ......++++|++..+++
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~--~~v~~-~~~p~giavdp~~g~LYv 263 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDI--QLIAA-YKQCNGATIHPINGELYF 263 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCE--EEEEE-ESCCCCEEECTTTCCEEE
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccc--eeecc-CCCceEEEEcCCCCeEEE
Confidence 4778999 9999866666 3 31 2666654431111100000 01111 123467888996547777
Q ss_pred EEeCCCcEEEEEcC-------Cccccccc-------c-eeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-C
Q 010287 299 YSSSKGSIRLIDMR-------QSALCDTH-------S-KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-M 361 (513)
Q Consensus 299 ~~~~dg~i~vwd~~-------~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~ 361 (513)
+-..++.|..+|+. ++..-... . ..+... .......|+|+|+|.+|+.++ . .
T Consensus 264 td~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~-----------~~~~p~~ia~~p~G~~lYvaD~~~h 332 (496)
T 3kya_A 264 NSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIA-----------DPSWEFQIFIHPTGKYAYFGVINNH 332 (496)
T ss_dssp EETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECS-----------SSSCCEEEEECTTSSEEEEEETTTT
T ss_pred EECCCCEEEEEecccccccccCceeecccccccccccceeEecC-----------CCCCceEEEEcCCCCEEEEEeCCCC
Confidence 77788899999987 44320000 0 011111 113457899999999766665 3 8
Q ss_pred eEEEEEccCCCCCe---eeeecccccccccccccccCCcccee-eEEEe-------CCCCEEEEEeCCCcEEEEecCCCC
Q 010287 362 TLKLWDINMDSGPV---ATFQVHEHLRPKLCDLYENDSIFDKF-ECCLS-------GDGGRVATGSYSNLFRVFGCSEGS 430 (513)
Q Consensus 362 ~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s-------~~~~~l~~~~~dg~i~vwd~~~~~ 430 (513)
.|+.++.......+ ..+.+................+..-. .+... +++.++++-...+.|+.++. ++
T Consensus 333 ~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G- 410 (496)
T 3kya_A 333 YFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG- 410 (496)
T ss_dssp EEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC-
T ss_pred EEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CC-
Confidence 88887765311111 22322211000000000000111111 23443 45666666677888999984 34
Q ss_pred ccceeecCC------------------------CCceeEEEEcCC-CCceeeecCCCeEEE
Q 010287 431 AESTTLEAS------------------------KNPMRRQVQTPS-RPSRPLGSLSGVVRR 466 (513)
Q Consensus 431 ~~~~~~~~~------------------------~~~v~~~~~~~~-~~~l~~~~~d~~i~~ 466 (513)
.. .++-+. ......+++.++ +.++++-..+..||.
T Consensus 411 ~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrk 470 (496)
T 3kya_A 411 IV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRT 470 (496)
T ss_dssp BE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEE
Confidence 22 233221 123456788886 666666666667766
No 271
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.86 E-value=0.011 Score=55.61 Aligned_cols=207 Identities=12% Similarity=0.017 Sum_probs=106.3
Q ss_pred CeEEEEeccCCCEEEEEcCC-----eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeC-CCCeEEEEEeCCCcEE
Q 010287 234 HINSISNNSDGETFISADDL-----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIR 307 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~i~ 307 (513)
...+++++++++++++...+ .+...+......... .+. .......++++| ++ .++++-..++.|+
T Consensus 183 ~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~-------~~~-~~~~P~giavd~~~G-~lyv~d~~~~~V~ 253 (433)
T 4hw6_A 183 QCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERL-------SLC-NARGAKTCAVHPQNG-KIYYTRYHHAMIS 253 (433)
T ss_dssp CEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEE-------EEE-ECSSBCCCEECTTTC-CEEECBTTCSEEE
T ss_pred CccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccc-------ccc-ccCCCCEEEEeCCCC-eEEEEECCCCEEE
Confidence 36789999999954443321 233333221111000 111 223456788999 55 7666666788899
Q ss_pred EEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCe---eeeeccc
Q 010287 308 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPV---ATFQVHE 382 (513)
Q Consensus 308 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~---~~~~~~~ 382 (513)
.+|..++..... .+.... ...-..++|+|++..|+.++. +.|..++.......+ ..+.+..
T Consensus 254 ~~d~~~g~~~~~---~~~~~~-----------~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~ 319 (433)
T 4hw6_A 254 SYDPATGTLTEE---EVMMDT-----------KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQH 319 (433)
T ss_dssp EECTTTCCEEEE---EEECSC-----------CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECT
T ss_pred EEECCCCeEEEE---EeccCC-----------CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecC
Confidence 999876553111 111100 012346999999997766553 889998876311211 2222210
Q ss_pred ccccccccccccCCccceeeEEE---------eCCCCEEEEEeCCCcEEEEecCCCCccceeecCC--------------
Q 010287 383 HLRPKLCDLYENDSIFDKFECCL---------SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-------------- 439 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~---------s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-------------- 439 (513)
..............+..-..+++ .+++.+.++-...+.|+.++.. + .. .++.+.
T Consensus 320 g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~-G-~v-~t~~G~g~~~~~G~~dG~~~ 396 (433)
T 4hw6_A 320 SSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE-G-RV-TTYAGRGNSREWGYVDGELR 396 (433)
T ss_dssp TCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT-S-EE-EEEECCCTTCSSCCBCEETT
T ss_pred CCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC-C-CE-EEEEeCCCCCccccCCCccc
Confidence 00000000000011111236888 6777777777778889999853 3 22 222111
Q ss_pred ----CCceeEEEEc-CCCCceeeecCCCeEEE
Q 010287 440 ----KNPMRRQVQT-PSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 440 ----~~~v~~~~~~-~~~~~l~~~~~d~~i~~ 466 (513)
......+++. +++.++++-..++.|+.
T Consensus 397 ~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~ 428 (433)
T 4hw6_A 397 SQALFNHPTSIAYDMKRKCFYIGDCDNHRVRK 428 (433)
T ss_dssp TTCBCSSEEEEEEETTTTEEEEEEGGGTEEEE
T ss_pred cccEeCCCcEEEEECCCCEEEEEeCCCCEEEE
Confidence 1224577888 55555555555555554
No 272
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.84 E-value=0.019 Score=53.14 Aligned_cols=191 Identities=9% Similarity=-0.049 Sum_probs=111.5
Q ss_pred CeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287 234 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 311 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~ 311 (513)
.+..++|++.+..|+.+ ..+.|..+++..... ..++ .........+++.+.+..++++-...+.|.+.++
T Consensus 117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~-------~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~ 188 (386)
T 3v65_B 117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVV-------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL 188 (386)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEE-------CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBT
T ss_pred ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEE-------eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeC
Confidence 37789999866666655 588999999875432 1111 1112345678888765466677677788888887
Q ss_pred CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC---CeEEEEEccCCCCCeeeeeccccccccc
Q 010287 312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY---MTLKLWDINMDSGPVATFQVHEHLRPKL 388 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~---~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 388 (513)
..... ...+.. .......++++|.+..|+..+. +.|..+++. +.....+......
T Consensus 189 dg~~~----~~l~~~------------~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~~~---- 246 (386)
T 3v65_B 189 DGAHR----KVLLWQ------------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIADTHLF---- 246 (386)
T ss_dssp TSCSC----EEEECS------------SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEECSSCS----
T ss_pred CCCce----EEeecC------------CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--CCCcEEEEECCCC----
Confidence 54321 111111 1135788999997776666543 667777766 4433333211100
Q ss_pred ccccccCCccceeeEEEeCCCCEEEEE-eCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 389 CDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 389 ~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.-..++|+|++..|+.+ +..+.|..+++... .....+.........+++ ..+.++.+....+.|..
T Consensus 247 ----------~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~ 313 (386)
T 3v65_B 247 ----------WPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINS 313 (386)
T ss_dssp ----------CEEEEEEEGGGTEEEEEETTTTEEEEECTTSC-SCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEE
T ss_pred ----------CeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC-eeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEE
Confidence 01379999877766654 45678999998743 222333333333456666 34455555555566555
No 273
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.82 E-value=0.012 Score=55.36 Aligned_cols=71 Identities=11% Similarity=0.196 Sum_probs=47.5
Q ss_pred eEEEEecc-CCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287 235 INSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 312 (513)
Q Consensus 235 v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 312 (513)
...++++| ++.++++- ..+.|..++....... .+. ... .......++|+|++..++++-...+.|..++..
T Consensus 228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~-~~~-----~~~-~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQETT-PLF-----TIQ-DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE-EEE-----ECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-----EcC-CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 56788999 56655555 6889999998754321 111 111 124568999999993366666678899998865
No 274
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.81 E-value=0.018 Score=54.07 Aligned_cols=111 Identities=17% Similarity=0.172 Sum_probs=67.7
Q ss_pred CeEEEEeccCCCEEEEE-c-CC----eEEEEEcCCCcce-eeecccCccccccccCCeEEEEEeC-CCCeEEEEEeCCCc
Q 010287 234 HINSISNNSDGETFISA-D-DL----RINLWNLEISNQS-FNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGS 305 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~-~-d~----~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~ 305 (513)
....++|+++++.|+.+ . ++ .+...+.. +... .. .+. .......++++| ++ .++++-..++.
T Consensus 180 ~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~-------~l~-~~~~p~giavdp~~g-~lyv~d~~~~~ 249 (430)
T 3tc9_A 180 KVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVIT-------ELT-KGQNCNGAETHPING-ELYFNSWNAGQ 249 (430)
T ss_dssp CEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEE-------EEE-ECSSCCCEEECTTTC-CEEEEETTTTE
T ss_pred CcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cceeeee-------eec-cCCCceEEEEeCCCC-EEEEEECCCCE
Confidence 36789999999966665 2 22 23334433 2211 01 111 123457888999 55 77777777889
Q ss_pred EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEcc
Q 010287 306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDIN 369 (513)
Q Consensus 306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~ 369 (513)
|..++...+... ....... ......++|+|++++|+.++ . +.|..++..
T Consensus 250 V~~~~~~~~~~~----~~~~~~~-----------~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 250 VFRYDFTTQETT----PLFTIQD-----------SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEEETTTTEEE----EEEECSS-----------SSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEECCCCcEE----EEEEcCC-----------CCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 999998755421 1111100 12467899999999666654 3 899998876
No 275
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.80 E-value=0.0046 Score=55.92 Aligned_cols=196 Identities=11% Similarity=0.054 Sum_probs=107.6
Q ss_pred eEEEEeccCCCEEEEE-------------cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeC--CCC-eEEE
Q 010287 235 INSISNNSDGETFISA-------------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THC-NMLA 298 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~-------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~-~~l~ 298 (513)
.-.+...++|..++++ .+|.|.++|+.+.......+.+....+.........+.+.+ ++. ++++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 3456677877777765 58999999987432222211111000122334667777766 342 2444
Q ss_pred EEeC--CCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC----------------
Q 010287 299 YSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY---------------- 360 (513)
Q Consensus 299 ~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~---------------- 360 (513)
+-.. +..|.+|++.........+..+++... ...+.+.+.++|.+.++..-
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~-----------~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~ 200 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLL-----------PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGL 200 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTC-----------SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTC
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCC-----------CCCceEEEeCCCCEEecCCcEeCCcccccchhhccC
Confidence 4333 567888887654332233334443221 46889999999998887531
Q ss_pred CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCCCccc--eeec
Q 010287 361 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAES--TTLE 437 (513)
Q Consensus 361 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~--~~~~ 437 (513)
..=.+|.+.. ++ +..+...-.. -..++|+||++.|+.+. ..+.|+.|++....... ..+.
T Consensus 201 ~~g~vyr~d~-~~-~~~~~~~l~~---------------pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~ 263 (355)
T 3sre_A 201 AWSFVTYYSP-ND-VRVVAEGFDF---------------ANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS 263 (355)
T ss_dssp CCEEEEEECT-TC-CEEEEEEESS---------------EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred CccEEEEEEC-Ce-EEEeecCCcc---------------cCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe
Confidence 1223444332 22 2211111000 13799999998877654 57899999986432221 2232
Q ss_pred CCCCceeEEEEcC-CCCceeeec
Q 010287 438 ASKNPMRRQVQTP-SRPSRPLGS 459 (513)
Q Consensus 438 ~~~~~v~~~~~~~-~~~~l~~~~ 459 (513)
.....-.+++.+ +|.+.+++.
T Consensus 264 -~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 264 -FDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp -CSSEEEEEEECTTTCCEEEEEE
T ss_pred -CCCCCceEEEeCCCCcEEEEec
Confidence 233455788888 488776554
No 276
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.80 E-value=0.018 Score=51.64 Aligned_cols=158 Identities=10% Similarity=-0.023 Sum_probs=93.0
Q ss_pred eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC-CcEEEEEc
Q 010287 235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDM 311 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~vwd~ 311 (513)
...+++.+.+..|+.+ ..+.|.+.++.... ...+. .........++++|.+..++.+.... +.|...++
T Consensus 79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~-------~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~ 150 (316)
T 1ijq_A 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF-------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 150 (316)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEE-------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred cCEEEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEE-------ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcC
Confidence 4678888755555554 58899999987432 22211 11234678999999763555554333 67888876
Q ss_pred CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecccccccccc
Q 010287 312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLC 389 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
.... ...+-.. .......++++|++..|+.++. +.|..+|+. +...+.+.......
T Consensus 151 dG~~-----~~~~~~~-----------~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d--g~~~~~~~~~~~~~---- 208 (316)
T 1ijq_A 151 NGVD-----IYSLVTE-----------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRL---- 208 (316)
T ss_dssp TSCC-----EEEEECS-----------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTTTT----
T ss_pred CCCC-----eEEEEEC-----------CCCCceEEEEeccCCEEEEEECCCCeEEEEecC--CCceEEEeecCCcc----
Confidence 4322 1111100 1135788999998887777664 899999987 33333332110000
Q ss_pred cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc
Q 010287 390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 431 (513)
Q Consensus 390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 431 (513)
..-..+++. .+.++++-...+.|..++..+++.
T Consensus 209 --------~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 209 --------AHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 241 (316)
T ss_dssp --------SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred --------CCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc
Confidence 001256775 355555666778899999876643
No 277
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.76 E-value=0.028 Score=52.81 Aligned_cols=182 Identities=11% Similarity=0.020 Sum_probs=93.1
Q ss_pred eEEEEecc-CCCEEEEE-cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287 235 INSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 312 (513)
Q Consensus 235 v~~~~~~~-~~~~l~s~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 312 (513)
...++++| ++.++++- .++.|+.++..++.....+.. .+.......++|+|++..++++-...+.|..++..
T Consensus 230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~------~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM------MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE------CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec------cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 45688899 56555554 578899999875543122211 11122234799999993366666667899998865
Q ss_pred C--cccccccceeeccc-cCCCCc--cccccccccEEEEEE---------eecCCEEEEEeC-CeEEEEEccCCCCCeee
Q 010287 313 Q--SALCDTHSKLFEEQ-EAPGTR--SFFTEIIASISDIKF---------ARNGRHILSRDY-MTLKLWDINMDSGPVAT 377 (513)
Q Consensus 313 ~--~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~v~~i~~---------sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~ 377 (513)
. +... ....+-+. ...... ......-.....+++ .+++.+.++-.. +.|+.++.. + .+.+
T Consensus 304 ~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~--G-~v~t 378 (433)
T 4hw6_A 304 RETGKLA--VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE--G-RVTT 378 (433)
T ss_dssp TTTCCBC--CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT--S-EEEE
T ss_pred CCCcccC--cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC--C-CEEE
Confidence 2 2211 01111111 000000 000011134677888 566666655444 888888743 4 3344
Q ss_pred eecccc--ccccccc-ccccCCccceeeEEEe-CCCCEEEEEeCCCcEEEEecC
Q 010287 378 FQVHEH--LRPKLCD-LYENDSIFDKFECCLS-GDGGRVATGSYSNLFRVFGCS 427 (513)
Q Consensus 378 ~~~~~~--~~~~~~~-~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~vwd~~ 427 (513)
+.+... ....... ......+..-..++++ +++.++++-..++.|+.++++
T Consensus 379 ~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 379 YAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 433211 0000000 0000111122478999 666666666667788887764
No 278
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.76 E-value=0.0031 Score=63.13 Aligned_cols=62 Identities=6% Similarity=0.068 Sum_probs=41.5
Q ss_pred CCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeeeeecc
Q 010287 303 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVH 381 (513)
Q Consensus 303 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~ 381 (513)
+|.|..||+.+++...+. ... .......+...+.+++.++. +.|+.||.++ ++.+..+...
T Consensus 437 ~g~l~A~D~~tG~~~W~~----~~~-------------~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t-G~~l~~~~~~ 498 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKV----PYP-------------THWNGGTLSTAGNLVFQGTAAGQMHAYSADK-GEALWQFEAQ 498 (668)
T ss_dssp EEEEEEEETTTTEEEEEE----EES-------------SSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred cceEEEEeCCCCcEEEEc----cCC-------------CCCcCceeEeCCCEEEEECCcccchhhhhhc-ChhheEecCC
Confidence 477889999888764331 111 12222334556778888774 9999999997 8888777665
Q ss_pred c
Q 010287 382 E 382 (513)
Q Consensus 382 ~ 382 (513)
.
T Consensus 499 ~ 499 (668)
T 1kv9_A 499 S 499 (668)
T ss_dssp S
T ss_pred C
Confidence 4
No 279
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.74 E-value=0.023 Score=51.17 Aligned_cols=232 Identities=10% Similarity=0.064 Sum_probs=121.2
Q ss_pred CeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC
Q 010287 234 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 313 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 313 (513)
.+.++.+.+ +..++.+..+.|.. ...+....+... ....+...+..+.+.+++ ..++.+ .+|.|. ....
T Consensus 81 ~~~~i~~~~-~~~~~~g~~g~i~~--S~DgG~tW~~~~----~~~~~~~~~~~i~~~~~~-~~~~~~-~~g~v~--~S~D 149 (327)
T 2xbg_A 81 RFNSVSFQG-NEGWIVGEPPIMLH--TTDGGQSWSQIP----LDPKLPGSPRLIKALGNG-SAEMIT-NVGAIY--RTKD 149 (327)
T ss_dssp EEEEEEEET-TEEEEEEETTEEEE--ESSTTSSCEECC----CCTTCSSCEEEEEEEETT-EEEEEE-TTCCEE--EESS
T ss_pred cEEEEEecC-CeEEEEECCCeEEE--ECCCCCCceECc----cccCCCCCeEEEEEECCC-CEEEEe-CCccEE--EEcC
Confidence 367788876 55555566675443 333333333211 001123446778877766 666554 456442 2222
Q ss_pred cccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEE-EEccCCCCCeeeeeccccccccccccc
Q 010287 314 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKL-WDINMDSGPVATFQVHEHLRPKLCDLY 392 (513)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (513)
+-.. +.... ..+...+..+.+.|++.+++.+..+.+.. .|-. +.....+.....
T Consensus 150 gG~t------W~~~~--------~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g--G~tW~~~~~~~~--------- 204 (327)
T 2xbg_A 150 SGKN------WQALV--------QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG--QTAWEPHNRTTS--------- 204 (327)
T ss_dssp TTSS------EEEEE--------CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT--CSSCEEEECCSS---------
T ss_pred CCCC------CEEee--------cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC--CCceeECCCCCC---------
Confidence 1111 11110 01124688899999999888877654433 3321 233332221110
Q ss_pred ccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeec----CCCCceeEEEEcCCCCceeeecCCCeEEE-e
Q 010287 393 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE----ASKNPMRRQVQTPSRPSRPLGSLSGVVRR-V 467 (513)
Q Consensus 393 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~-~ 467 (513)
..+..+.+.++++.++ .+.+|.+++.+...+ ..-..+. .....+..+.+.+++..++.+. ++.+.. .
T Consensus 205 -----~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G-~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~~S~ 276 (327)
T 2xbg_A 205 -----RRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNS-ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALLCSQ 276 (327)
T ss_dssp -----SCEEEEEECTTSCEEE-EETTTEEEEEETTEE-EEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEEEES
T ss_pred -----CccceeEECCCCCEEE-EeCCceEEEecCCCC-CeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEEEeC
Confidence 0134788899887664 455787777642212 1111111 1223577888888888777765 666655 4
Q ss_pred cCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEE
Q 010287 468 KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 511 (513)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~ 511 (513)
++...+.. ..........+.++.|.+++..++++.++.++-+
T Consensus 277 DgG~tW~~--~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~ 318 (327)
T 2xbg_A 277 DGGQTWQQ--DVDVKKVPSNFYKILFFSPDQGFILGQKGILLRY 318 (327)
T ss_dssp STTSSCEE--CGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEE
T ss_pred CCCcccEE--cCccCCCCCCeEEEEEECCCceEEEcCCceEEEE
Confidence 44444421 1101112456789999877777777777666544
No 280
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.72 E-value=0.073 Score=56.53 Aligned_cols=101 Identities=11% Similarity=0.052 Sum_probs=52.4
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCccccCCcccc-ccC
Q 010287 408 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD-FSM 486 (513)
Q Consensus 408 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~-~~~ 486 (513)
+| +|++|- ...|++|++...+.+....... ..+..+.....+.+++.|..-..+.+.. .+.....+..-..+ ...
T Consensus 895 ~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~-y~~~~~~L~~~a~D~~~~ 970 (1158)
T 3ei3_A 895 NG-KLLASI-NSTVRLYEWTTEKELRTECNHY-NNIMALYLKTKGDFILVGDLMRSVLLLA-YKPMEGNFEEIARDFNPN 970 (1158)
T ss_dssp TT-EEEEEE-TTEEEEEEECTTSCEEEEEEEC-CCSCEEEEEEETTEEEEEESSBCEEEEE-EETTTTEEEEEEECCSCB
T ss_pred CC-EEEEEc-CCEEEEEECCCCceEEEEeecc-ccEEEEEEeccCCEEEEEEhhheEEEEE-EEcCCCeEEEEEeecccc
Confidence 44 444443 4789999998653222111111 1122333334567888887776666611 11110011111111 245
Q ss_pred CeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287 487 KLLHLAWHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 487 ~i~~~~~sp~~~~la~~~~~~~~i~~ 512 (513)
.++++.+--++.++++-..++++++.
T Consensus 971 ~vta~~~ld~~t~l~aD~~gNl~vl~ 996 (1158)
T 3ei3_A 971 WMSAVEILDDDNFLGAENAFNLFVCQ 996 (1158)
T ss_dssp CEEEEEEEETTEEEEEETTSEEEEEE
T ss_pred cEEEEEEEccCcEEEEcCCCcEEEEe
Confidence 68888887777666666677777653
No 281
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.68 E-value=0.022 Score=55.84 Aligned_cols=85 Identities=9% Similarity=0.070 Sum_probs=46.3
Q ss_pred EEEEeCCCCeEEEEEeCC----------------CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEe
Q 010287 286 SAEFHPTHCNMLAYSSSK----------------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 349 (513)
Q Consensus 286 ~~~~~~~~~~~l~~~~~d----------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s 349 (513)
.+++.+.. .+++.+..+ +.|..+|.++++.... ++...... --+.....++. +...
T Consensus 245 ~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~----~q~~~~d~--wd~d~~~~p~l-~d~~ 316 (599)
T 1w6s_A 245 WYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFG----YQKTPHDE--WDYAGVNVMML-SEQK 316 (599)
T ss_dssp CCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEE----EESSTTCS--SCCCCCCCCEE-EEEE
T ss_pred ceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeE----eecCCCcc--ccccCCCccEE-Eecc
Confidence 45666766 566666654 3788999999887443 11110000 00001112222 2222
Q ss_pred -ecC---CEEEEEeC-CeEEEEEccCCCCCeeeee
Q 010287 350 -RNG---RHILSRDY-MTLKLWDINMDSGPVATFQ 379 (513)
Q Consensus 350 -p~~---~~l~~~~~-~~v~iwd~~~~~~~~~~~~ 379 (513)
.+| ..++.++. |.++++|.++ ++++....
T Consensus 317 ~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~lw~~~ 350 (599)
T 1w6s_A 317 DKDGKARKLLTHPDRNGIVYTLDRTD-GALVSANK 350 (599)
T ss_dssp CTTSCEEEEEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred ccCCcEEEEEEEECCCcEEEEEECCC-CCEeeccc
Confidence 467 45555665 9999999987 77765543
No 282
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.54 E-value=0.097 Score=53.10 Aligned_cols=159 Identities=11% Similarity=0.004 Sum_probs=93.0
Q ss_pred CeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC-CcEEEEE
Q 010287 234 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLID 310 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~vwd 310 (513)
....|++.+.++.|+.+ ..+.|.+.++.... ...++ .........|+++|....++.+-... +.|.+.+
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~-------~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~ 543 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF-------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 543 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEE-------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEE-------eCCCCCcceEEEecCCCCEEEecCCCCCeEEEEe
Confidence 35678888877666666 48899999987433 22211 12234578999999763555544333 6788888
Q ss_pred cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecc-cccccc
Q 010287 311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVH-EHLRPK 387 (513)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~-~~~~~~ 387 (513)
+..... +.+-. ........|++++.+..|+.++. ..|..+++. +.....+... ....
T Consensus 544 ~dG~~~-----~~lv~-----------~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d--G~~~~~v~~~~~~l~-- 603 (791)
T 3m0c_C 544 LNGVDI-----YSLVT-----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLA-- 603 (791)
T ss_dssp TTSCCE-----EEEEC-----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTTTTS--
T ss_pred cCCCce-----EEEEe-----------CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC--CCceEEEecCCCccC--
Confidence 754321 11111 11146788999987777777653 788888886 4443333211 1110
Q ss_pred cccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc
Q 010287 388 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 432 (513)
Q Consensus 388 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 432 (513)
.-+.+++..+ .++++-...+.|...+..+++..
T Consensus 604 -----------~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 604 -----------HPFSLAVFED-KVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp -----------SEEEEEEETT-EEEEEETTTTEEEEEETTTCCCC
T ss_pred -----------CCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcce
Confidence 0125555432 33445456678888887766443
No 283
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.52 E-value=0.058 Score=50.07 Aligned_cols=159 Identities=11% Similarity=0.003 Sum_probs=93.8
Q ss_pred CeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC-CCcEEEEE
Q 010287 234 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLID 310 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~vwd 310 (513)
....+++.+.+..|+.+ ..+.|.+.+++... ...+ +.........++++|.+..++.+-.. .+.|...+
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~-~~~l-------~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~ 231 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTL-------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 231 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCS-EEEE-------EECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCc-eEEE-------EeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEe
Confidence 36788888855555555 57899999987433 2221 12223457899999976355544423 47788888
Q ss_pred cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecc-cccccc
Q 010287 311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVH-EHLRPK 387 (513)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~-~~~~~~ 387 (513)
+..... ..+-. ........|++++++..|+.++. +.|..+|+. +.....+... ....
T Consensus 232 ~dG~~~-----~~~~~-----------~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~l~-- 291 (400)
T 3p5b_L 232 LNGVDI-----YSLVT-----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLA-- 291 (400)
T ss_dssp TTSCSC-----EEEEC-----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCCCEEEEECSSTTS--
T ss_pred CCCCcc-----EEEEE-----------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC--CCccEEEEeCCCCCC--
Confidence 754321 11110 01135788999998888877663 889999986 3333333211 1100
Q ss_pred cccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCcc
Q 010287 388 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 432 (513)
Q Consensus 388 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 432 (513)
.-..+++. .+.++++-...+.|..++..+++..
T Consensus 292 -----------~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 292 -----------HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp -----------SEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred -----------CCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCce
Confidence 01256663 3345556667788999997777443
No 284
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.49 E-value=0.057 Score=49.10 Aligned_cols=191 Identities=9% Similarity=-0.052 Sum_probs=111.8
Q ss_pred CeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEc
Q 010287 234 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 311 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~ 311 (513)
.+..++|++..+.|+.+ ..+.|..+++...... .+. .........+++.+.+.+++++-...+.|.+.++
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-~~~-------~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~ 145 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-EVV-------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL 145 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEE-------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCCce-EEE-------eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcC
Confidence 36789999876666655 5889999998754322 111 1112345788999865467777777889999997
Q ss_pred CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--C-CeEEEEEccCCCCCeeeeeccccccccc
Q 010287 312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-MTLKLWDINMDSGPVATFQVHEHLRPKL 388 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 388 (513)
..... ..+.. ........++++|.+..|+..+ . +.|..+++. +.....+......
T Consensus 146 dG~~~-----~~l~~-----------~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~~~---- 203 (349)
T 3v64_C 146 DGAHR-----KVLLW-----------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIADTHLF---- 203 (349)
T ss_dssp TSCSC-----EEEEC-----------TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEESCCSSCS----
T ss_pred CCCce-----EEEEe-----------CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--CCCcEEEEECCCC----
Confidence 64321 11110 0113568899999766666544 2 667777776 4333332111100
Q ss_pred ccccccCCccceeeEEEeCCCCEEEEE-eCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 389 CDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 389 ~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.-..++++|++..|+.+ ...+.|..+++... .....+.........+++ ..+..+.+-...+.|..
T Consensus 204 ----------~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~-~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~ 270 (349)
T 3v64_C 204 ----------WPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINS 270 (349)
T ss_dssp ----------CEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEE
T ss_pred ----------CcceEEEeCCCCEEEEEECCCCEEEEEeCCCC-ceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEE
Confidence 01379999877766654 45678999998743 222233333333456666 34444455445555544
No 285
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.47 E-value=0.051 Score=48.06 Aligned_cols=212 Identities=9% Similarity=0.043 Sum_probs=115.0
Q ss_pred eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccc--c-ccCCeEEEEE---eCCCCeEEEEEe-----
Q 010287 235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANME--D-LTEVITSAEF---HPTHCNMLAYSS----- 301 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~-~~~~i~~~~~---~~~~~~~l~~~~----- 301 (513)
.-+++|++....|..+ ..++|..|+...+.. ..+ .+. .+. + ....+..+.| .|++ .++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~-~~~-~~~--~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~af 89 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH-FNV-VID--GASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKSF 89 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCE-EEE-CCT--TTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTTT
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE-EEE-ecC--CccccCCCcceeeEEEEeccCCCC-cEEEEEcccccc
Confidence 4578898855555555 599999999874332 222 110 100 1 1124579999 6886 7777544
Q ss_pred --------CCCcEEEEEcC---CcccccccceeeccccCCCCcccccc-ccccEEEEEEeecCCEEEEEeC--CeEEEEE
Q 010287 302 --------SKGSIRLIDMR---QSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKFARNGRHILSRDY--MTLKLWD 367 (513)
Q Consensus 302 --------~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd 367 (513)
.+..+..||+. +++.... ..+...... .....+ -......++..++|...++++. +.|...+
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~--~dL~~~~~~--~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~ 165 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWS--VNFEKVQDE--FEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVS 165 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEE--EESHHHHHH--HHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEEC
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEE--ecCcccccc--ccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEe
Confidence 26789999998 6654221 011100000 000000 0124789999999998888663 5544444
Q ss_pred ccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeec--CC---CCc
Q 010287 368 INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE--AS---KNP 442 (513)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~---~~~ 442 (513)
.. ++.+..+........ .....+.++++|+|+.|++....|.|..+|+.........+. +. ...
T Consensus 166 pd--G~~~~~~~~~~~~~~---------~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~ 234 (334)
T 2p9w_A 166 AD--GKTVSTFAWESGNGG---------QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSG 234 (334)
T ss_dssp TT--SCCEEEEEECCCCSS---------SCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTT
T ss_pred CC--CCEEeeeeecCCCcc---------cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccC
Confidence 43 554443322111100 011234899999999888877799999999884322001121 21 112
Q ss_pred eeE-EEEcCCCCc-eeeecCCCeEEE
Q 010287 443 MRR-QVQTPSRPS-RPLGSLSGVVRR 466 (513)
Q Consensus 443 v~~-~~~~~~~~~-l~~~~~d~~i~~ 466 (513)
... +....+|+. |++.+..+.+.+
T Consensus 235 ~dgilp~~~~G~vllV~~~~~~~~~l 260 (334)
T 2p9w_A 235 TEKIVTVPVGNESVLVGARAPYAISF 260 (334)
T ss_dssp EEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred cccccccccCCEEEEEEcCCCCEEEE
Confidence 223 344457777 445555666555
No 286
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.45 E-value=0.065 Score=48.79 Aligned_cols=113 Identities=14% Similarity=0.120 Sum_probs=62.4
Q ss_pred CeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCC---CCeEEEEEeCC-----Cc
Q 010287 234 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSK-----GS 305 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~d-----g~ 305 (513)
....++|.|+|+++++-.++.|.+++ . +. ...+.++. ...........++++|+ +..++++-... ..
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~-~-g~-~~~~~~~~--v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR-E-GR-LSTYAELS--VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE-T-TE-EEEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE-C-CC-ccEeecce--EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 46799999999977766679999998 2 32 11111111 11122456889999998 42555554433 67
Q ss_pred EEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEE
Q 010287 306 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 358 (513)
Q Consensus 306 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~ 358 (513)
|..|+...+... .....+....... -..| ....++|.|||.+.++-
T Consensus 107 v~r~~~~~~~~~-~~~~l~~~~p~~~----~~~h--~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 107 VVRLRHLGERGV-LDRVVLDGIPARP----HGLH--SGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEEECSSCEE-EEEEEEEEECCCT----TCCC--CCCCEEECTTSCEEEEC
T ss_pred EEEEEeCCCCcC-ceEEEEEeCCCCC----CCCc--CCceEEECCCCCEEEEE
Confidence 777877643211 1011111110000 0112 23579999999777763
No 287
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.34 E-value=0.042 Score=48.56 Aligned_cols=173 Identities=9% Similarity=0.070 Sum_probs=99.7
Q ss_pred ccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE---eecCCEEE
Q 010287 280 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF---ARNGRHIL 356 (513)
Q Consensus 280 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~---sp~~~~l~ 356 (513)
......++.|++..+.++++.-..+.|..||...+.... + .+.....+. .....+..+.| .|++++++
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~--~-~~~~~s~~g------~~~~~~sGl~~~~~D~~grL~v 81 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN--V-VIDGASSNG------DGEQQMSGLSLLTHDNSKRLFA 81 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE--E-CCTTTCCSS------CCSEEEEEEEESSSSSCCEEEE
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE--E-ecCCccccC------CCcceeeEEEEeccCCCCcEEE
Confidence 344456889998663555655579999999986543211 1 122100000 00023578999 68888888
Q ss_pred EEe--------------CCeEEEEEcc---CCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCC-
Q 010287 357 SRD--------------YMTLKLWDIN---MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS- 418 (513)
Q Consensus 357 ~~~--------------~~~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d- 418 (513)
+.. +..|..||+. + ++.+........... ..... .........++..++|+..++++..
T Consensus 82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~t-g~~~~~~dL~~~~~~-~~~~~-g~~~~~~nDvavD~~GnaYVt~s~~~ 158 (334)
T 2p9w_A 82 VMKNAKSFNFADQSSHGASSFHSFNLPLSEN-SKPVWSVNFEKVQDE-FEKKA-GKRPFGVVQSAQDRDGNSYVAFALGM 158 (334)
T ss_dssp EEEETTTTCTTSCCSSSCCEEEEEESSCCTT-CCCSEEEESHHHHHH-HHHHH-SSCCEEEEEEEECTTSCEEEEEEESS
T ss_pred EEcccccccccccccCCCCEEEEEcCCcCCC-CCEEEEecCcccccc-ccccc-cccccCCceeEECCCCCEEEeCCCCC
Confidence 544 3678999988 5 555544332110000 00000 0001113489999999999988888
Q ss_pred CcEEEEecCCCCccceee--cC----CCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 419 NLFRVFGCSEGSAESTTL--EA----SKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 419 g~i~vwd~~~~~~~~~~~--~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
+.|...+.... ....+ .. ...-.+.+++.|+++.|+.....|.+..
T Consensus 159 ~~I~rV~pdG~--~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~ 210 (334)
T 2p9w_A 159 PAIARVSADGK--TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTA 210 (334)
T ss_dssp CEEEEECTTSC--CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEE
T ss_pred CeEEEEeCCCC--EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEE
Confidence 88777666532 22221 11 1122458999999998877766887765
No 288
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.23 E-value=0.11 Score=46.55 Aligned_cols=192 Identities=10% Similarity=-0.020 Sum_probs=108.6
Q ss_pred CeEEEEeccCCCEEEEE--cCCeEEEEEcCCC---cceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEE
Q 010287 234 HINSISNNSDGETFISA--DDLRINLWNLEIS---NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 308 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v 308 (513)
.+.+++|++.++.|+.+ ..+.|..+++... .....+ +.........+++.+.+.+++++-...+.|.+
T Consensus 31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~-------~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~ 103 (316)
T 1ijq_A 31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-------ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV 103 (316)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-------ECSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE-------EeCCCCCcCEEEEeecCCeEEEEECCCCEEEE
Confidence 36789999876666655 5789999998751 111111 11122345789998755366677677889999
Q ss_pred EEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--C-CeEEEEEccCCCCCeeeeecccccc
Q 010287 309 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-MTLKLWDINMDSGPVATFQVHEHLR 385 (513)
Q Consensus 309 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~-~~v~iwd~~~~~~~~~~~~~~~~~~ 385 (513)
+|+..... ..+-.. .......++++|.+..|+..+ . +.|..+++. +.....+......
T Consensus 104 ~~~~g~~~-----~~~~~~-----------~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d--G~~~~~~~~~~~~- 164 (316)
T 1ijq_A 104 ADTKGVKR-----KTLFRE-----------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVTENIQ- 164 (316)
T ss_dssp EETTSSSE-----EEEEEC-----------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEEEECSSCS-
T ss_pred EeCCCCce-----EEEEEC-----------CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC--CCCeEEEEECCCC-
Confidence 99764321 111110 113568899999766655543 2 678777775 4444333211100
Q ss_pred cccccccccCCccceeeEEEeCCCCEEEEEe-CCCcEEEEecCCCCccceeecC--CCCceeEEEEcCCCCceeeecCCC
Q 010287 386 PKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSG 462 (513)
Q Consensus 386 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~ 462 (513)
.-..++++|++..|+.+. ..+.|..+|+... ........ .......+++. .+.++.+....+
T Consensus 165 -------------~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~ 229 (316)
T 1ijq_A 165 -------------WPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 229 (316)
T ss_dssp -------------CEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred -------------CceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence 013799999877766554 5678999998743 22222221 12223456664 344455555555
Q ss_pred eEEE
Q 010287 463 VVRR 466 (513)
Q Consensus 463 ~i~~ 466 (513)
.|..
T Consensus 230 ~V~~ 233 (316)
T 1ijq_A 230 AIFS 233 (316)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 5554
No 289
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.22 E-value=0.0034 Score=63.10 Aligned_cols=157 Identities=11% Similarity=0.001 Sum_probs=84.7
Q ss_pred eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCC-CcEEEEEc
Q 010287 235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDM 311 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~vwd~ 311 (513)
...|++.+.+..|+.+ ..+.|.++++.... ...++ .........++++|.+..++++-... +.|.++++
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~-~~~l~-------~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~ 526 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF-------REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 526 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC-EEEEC-------CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCc-eEEEE-------eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeC
Confidence 3457777554444444 47889999887432 22211 11123456788998763444443222 67777765
Q ss_pred CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecccccccccc
Q 010287 312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLC 389 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
..... +.+.. ........|+|+|++..|+.++. +.|..+++. +.....+........
T Consensus 527 dG~~~-----~~l~~-----------~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~~--- 585 (699)
T 1n7d_A 527 NGVDI-----YSLVT-----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLA--- 585 (699)
T ss_dssp SSCCC-----CEESC-----------SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS--SSCCEEECCCSSSCS---
T ss_pred CCCCe-----eEEEe-----------CCCCCccEEEEeccCCEEEEEecCCCeEEEEccC--CCceEEEEecCCcCC---
Confidence 43211 11100 00134567999998776666553 889999986 332222221100000
Q ss_pred cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287 390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 430 (513)
Q Consensus 390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 430 (513)
. -..+++..+ .++++....+.|..++..+++
T Consensus 586 ------~---P~glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 586 ------H---PFSLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp ------S---CCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred ------C---ceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 0 115566544 445566677899999987663
No 290
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.21 E-value=0.12 Score=46.98 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=61.4
Q ss_pred CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCC---CCeEEEEEeC---C---
Q 010287 233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSS---K--- 303 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~---d--- 303 (513)
.....++|.|+++++++-.++.|++++.. +. ..+.++. ...........++++|+ +..++++-+. +
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~-G~--~~~~~~~--v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISPS-GK--KLVASFD--VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECSS-CE--EEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeCC-Cc--eEeeccc--eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 34789999999987776667999999743 33 1111111 11122356889999997 4255555442 3
Q ss_pred -CcEEEEEcCCccc-ccccceeeccccCCCCccccccccccEEEEEEeecCCEEEE
Q 010287 304 -GSIRLIDMRQSAL-CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 357 (513)
Q Consensus 304 -g~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~ 357 (513)
..|..|+...... .......+..... -..| ....+.|.|||.+.++
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~------~~~h--~~~~l~~~pDG~Lyvt 151 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPG------AYIH--NGGRIRFGPDGMLYIT 151 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEEC------CSSC--CCCCEEECTTSCEEEE
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCC------CCCc--CCceEEECCCCcEEEE
Confidence 5677777654310 0000111111000 0112 2356899999987776
No 291
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.20 E-value=0.066 Score=52.43 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=38.9
Q ss_pred CCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-CCeEEEEEccCCCCCeeeeecc
Q 010287 303 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH 381 (513)
Q Consensus 303 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~~~v~iwd~~~~~~~~~~~~~~ 381 (513)
+|.|.-||+.+++...+. ... .++..-.....+.+++.++ ++.++.||.++ ++.+-.++..
T Consensus 465 ~G~l~A~D~~tG~~~W~~----~~~-------------~~~~~g~~~tagglvf~g~~dg~l~A~D~~t-G~~lW~~~~~ 526 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEH----KEH-------------LPLWAGVLATAGNLVFTGTGDGYFKAFDAKS-GKELWKFQTG 526 (582)
T ss_dssp SEEEEEECTTTCCEEEEE----EES-------------SCCCSCCEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred cceEEEEECCCCCEEEEe----cCC-------------CCCcccceEeCCCEEEEECCCCcEEEEECCC-CCEEEEecCC
Confidence 577888888888764331 110 0111111222456666676 49999999997 8888877665
Q ss_pred cc
Q 010287 382 EH 383 (513)
Q Consensus 382 ~~ 383 (513)
..
T Consensus 527 ~g 528 (582)
T 1flg_A 527 SG 528 (582)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 292
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.17 E-value=0.26 Score=50.00 Aligned_cols=183 Identities=7% Similarity=-0.089 Sum_probs=105.5
Q ss_pred EEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeec
Q 010287 246 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 325 (513)
Q Consensus 246 ~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 325 (513)
+|+.+....|+..++...... . +......+..++|++.+..++++-...+.|+.+++............+.
T Consensus 397 ~Ll~an~~~Ir~i~l~~~~~~-~--------l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~ 467 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTLDRSEYT-S--------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 467 (791)
T ss_dssp EEEEECBSSEEEECTTSCCCE-E--------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred ccccccccceeEeeccCCcce-e--------eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe
Confidence 555555567887777643321 1 1223456789999986546666666678898888764321000011111
Q ss_pred cccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeE
Q 010287 326 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 403 (513)
Q Consensus 326 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (513)
........|++.+.+..|+..+. +.|.+.++. +.....+...... ....|
T Consensus 468 ------------~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld--G~~~~~l~~~~l~--------------~P~gI 519 (791)
T 3m0c_C 468 ------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFRENGS--------------KPRAI 519 (791)
T ss_dssp ------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT--SSSEEEEEECTTC--------------CEEEE
T ss_pred ------------cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC--CCeEEEEEeCCCC--------------CcceE
Confidence 01134677999988877776653 899999987 4444444221110 01379
Q ss_pred EEeCCCCEEEEEe-C-CCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeee-cCCCeEEE
Q 010287 404 CLSGDGGRVATGS-Y-SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRR 466 (513)
Q Consensus 404 ~~s~~~~~l~~~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~ 466 (513)
++.|.+.+|+... . .+.|...++... .....+.........+++.+....|..+ .....|..
T Consensus 520 aVDp~~g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~ 584 (791)
T 3m0c_C 520 VVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 584 (791)
T ss_dssp EEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEecCCCCEEEecCCCCCeEEEEecCCC-ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEE
Confidence 9999876666554 2 267888888643 3323333344567789999776665544 44556655
No 293
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.14 E-value=0.13 Score=46.11 Aligned_cols=236 Identities=11% Similarity=0.035 Sum_probs=122.6
Q ss_pred CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287 233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 312 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 312 (513)
..+.++.|.+++..++++..+.| |....+....+.... ........+.++.+.+ + ..++. +.++.|.. ..
T Consensus 36 ~~~~~v~~~~~~~~~~~G~~g~i--~~s~DgG~tW~~~~~---~~~~~~~~~~~i~~~~-~-~~~~~-g~~g~i~~--S~ 105 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLVGVNATL--METRDGGQTWEPRTL---VLDHSDYRFNSVSFQG-N-EGWIV-GEPPIMLH--TT 105 (327)
T ss_dssp SCEEEEEESSSSCEEEEETTTEE--EEESSTTSSCEECCC---CCSCCCCEEEEEEEET-T-EEEEE-EETTEEEE--ES
T ss_pred CcEEEEEECCCCcEEEEcCCCeE--EEeCCCCCCCeECCC---CCCCCCccEEEEEecC-C-eEEEE-ECCCeEEE--EC
Confidence 45889999888888887777765 322333333322110 1112244688999987 3 55554 55664433 22
Q ss_pred CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeeccccccccccccc
Q 010287 313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLY 392 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (513)
.+-...+.+.. . ..+.+.+..+.+.+++..++++..+.| |.....++..........
T Consensus 106 DgG~tW~~~~~---~---------~~~~~~~~~i~~~~~~~~~~~~~~g~v--~~S~DgG~tW~~~~~~~~--------- 162 (327)
T 2xbg_A 106 DGGQSWSQIPL---D---------PKLPGSPRLIKALGNGSAEMITNVGAI--YRTKDSGKNWQALVQEAI--------- 162 (327)
T ss_dssp STTSSCEECCC---C---------TTCSSCEEEEEEEETTEEEEEETTCCE--EEESSTTSSEEEEECSCC---------
T ss_pred CCCCCceECcc---c---------cCCCCCeEEEEEECCCCEEEEeCCccE--EEEcCCCCCCEEeecCCC---------
Confidence 22111111110 0 001134677887777777777665543 222222444333321110
Q ss_pred ccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEe--cCC
Q 010287 393 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV--KGA 470 (513)
Q Consensus 393 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~--~~~ 470 (513)
..+..+.+.|++.+++.+...+.++-+|-. +..-...-......+..+.+.+++..++.+ .+|.+.+. ++.
T Consensus 163 -----~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G 235 (327)
T 2xbg_A 163 -----GVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNS 235 (327)
T ss_dssp -----CCEEEEEECTTSCEEEEETTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEE
T ss_pred -----cceEEEEEcCCCcEEEEECCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEEe-CCceEEEecCCCC
Confidence 013478899999888776544333333321 111111112344567788889988766554 46777662 112
Q ss_pred CCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEE
Q 010287 471 DNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 509 (513)
Q Consensus 471 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~ 509 (513)
..+.. .....+.....+.++++.|++.+++++..+.++
T Consensus 236 ~tW~~-~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~ 273 (327)
T 2xbg_A 236 ENWGE-LLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALL 273 (327)
T ss_dssp EEECC-CBCTTSSCCSCEEEEEESSSSCEEEEESTTCEE
T ss_pred CeeEe-ccCCcccCCcceEEEEecCCCEEEEEeCCCeEE
Confidence 22210 110001123458999999999988888776664
No 294
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.09 E-value=0.14 Score=45.65 Aligned_cols=156 Identities=12% Similarity=0.002 Sum_probs=91.6
Q ss_pred eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-CCCcEEEEEc
Q 010287 235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDM 311 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~vwd~ 311 (513)
...+++.+.+..|+.+ ..+.|.++++...... .+ +.........+++.|.+..++.+-. ..+.|...++
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l-------~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~ 152 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK-VL-------FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGM 152 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EE-------ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEET
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE-EE-------EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEc
Confidence 5578888755555554 5789999998743221 11 1123355789999987634444432 3577888876
Q ss_pred CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecccccccccc
Q 010287 312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLC 389 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
..... ..+-.. .......++++|++..|+.++. +.|..+|+. +...+.+......
T Consensus 153 dG~~~-----~~~~~~-----------~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~----- 209 (318)
T 3sov_A 153 DGSSR-----FIIINS-----------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQAVVKGSLP----- 209 (318)
T ss_dssp TSCSC-----EEEECS-----------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSCCS-----
T ss_pred CCCCe-----EEEEEC-----------CCCCccEEEEeccCCEEEEEECCCCEEEEEcCC--CCceEEEecCCCC-----
Confidence 53221 111100 0135688999998877777653 889999986 3333333210100
Q ss_pred cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc
Q 010287 390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 431 (513)
Q Consensus 390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 431 (513)
. -..+++.. +.++.+-...+.|..++..+++.
T Consensus 210 ------~---P~glav~~-~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 210 ------H---PFALTLFE-DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp ------C---EEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred ------C---ceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence 0 12566653 34455666778899999877744
No 295
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.06 E-value=0.15 Score=45.45 Aligned_cols=149 Identities=7% Similarity=0.111 Sum_probs=84.5
Q ss_pred CCeEEEEEcCCCcceeeec-ccCccccccccCCeEEEEE--eCCCC-eEEEEEeCCCcEEEEEcC---Ccccccccceee
Q 010287 252 DLRINLWNLEISNQSFNIV-DVKPANMEDLTEVITSAEF--HPTHC-NMLAYSSSKGSIRLIDMR---QSALCDTHSKLF 324 (513)
Q Consensus 252 d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~--~~~~~-~~l~~~~~dg~i~vwd~~---~~~~~~~~~~~~ 324 (513)
+++|.+|++......+..+ .+. ..+......+..+++ +|... .+++....+|.+..|++. .+....+.++.|
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~-~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPD-HPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTT-SCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccc-cCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 6899999774222222221 000 000011145666777 67442 367778889999999984 333333445666
Q ss_pred ccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCC----CCeeeeecccccccccccccccCCccc
Q 010287 325 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDS----GPVATFQVHEHLRPKLCDLYENDSIFD 399 (513)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (513)
... +.+..+...+....|+.+.+ ..|..|+.+... +.+..+.. . ....+
T Consensus 177 ~lg-------------sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-g------------~l~aD 230 (355)
T 3amr_A 177 KMN-------------SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-R------------HLTRD 230 (355)
T ss_dssp ECS-------------SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-S------------SBCSC
T ss_pred cCC-------------CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC-C------------ccccC
Confidence 543 45788999998888888876 446555644211 12222211 1 11112
Q ss_pred eeeEEE--eCCCC-EEEEEe-CCCcEEEEecC
Q 010287 400 KFECCL--SGDGG-RVATGS-YSNLFRVFGCS 427 (513)
Q Consensus 400 v~~~~~--s~~~~-~l~~~~-~dg~i~vwd~~ 427 (513)
+..+++ .++++ ||++++ .++++.+||..
T Consensus 231 vEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 231 IEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred cceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 346666 55666 677666 56799999997
No 296
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.02 E-value=0.17 Score=45.21 Aligned_cols=191 Identities=6% Similarity=-0.107 Sum_probs=109.8
Q ss_pred eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287 235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 312 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 312 (513)
+.+++|++..+.|.-+ ..+.|..+++........+ +.........+++.+.+.+++.+-...+.|.++++.
T Consensus 37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~-------~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d 109 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV-------VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD 109 (318)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE-------EEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE-------EcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECC
Confidence 6789999866666555 5889999998755321111 111123467899997554777776778899999976
Q ss_pred CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe--C-CeEEEEEccCCCCCeeeeecccccccccc
Q 010287 313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-MTLKLWDINMDSGPVATFQVHEHLRPKLC 389 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~--~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
.... ..+.. ........++++|.+..|+..+ . +.|...++. +.....+....-.
T Consensus 110 G~~~-----~~l~~-----------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~l~----- 166 (318)
T 3sov_A 110 GSLR-----KVLFW-----------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--GSSRFIIINSEIY----- 166 (318)
T ss_dssp SCSC-----EEEEC-----------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--SCSCEEEECSSCS-----
T ss_pred CCcE-----EEEEe-----------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--CCCeEEEEECCCC-----
Confidence 4321 11110 0113568899999766666544 2 677777776 4433333211100
Q ss_pred cccccCCccceeeEEEeCCCCEEEEE-eCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 390 DLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 390 ~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
.-..++++|++..|+.+ +..+.|..+++... ...............+++.. +.++.+-...+.|..
T Consensus 167 ---------~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~ 233 (318)
T 3sov_A 167 ---------WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILA 233 (318)
T ss_dssp ---------CEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred ---------CccEEEEeccCCEEEEEECCCCEEEEEcCCCC-ceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEE
Confidence 01379999977766654 46788999998743 22222332233334555542 334444444455544
No 297
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.99 E-value=0.14 Score=46.85 Aligned_cols=164 Identities=13% Similarity=0.122 Sum_probs=98.6
Q ss_pred eccCCCEEEEEcCCeEEEEEcCCCcceeeecccCcccccc--ccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccc
Q 010287 240 NNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC 317 (513)
Q Consensus 240 ~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 317 (513)
...++..++.+.++.||.-++.... .++.+ .... ....|..+..+|+| .+|+.. .+..|.|-.+..+...
T Consensus 28 ~~~n~t~i~~a~~n~iR~~~i~~~~-~Yk~L-----~~~~~i~f~~i~qlvlSpsG-~lLAl~-g~~~V~Vv~LP~~~~~ 99 (452)
T 3pbp_A 28 SSQNGTRIVFIQDNIIRWYNVLTDS-LYHSL-----NFSRHLVLDDTFHVISSTSG-DLLCLF-NDNEIFVMEVPWGYSN 99 (452)
T ss_dssp EETTTTEEEEEETTEEEEEETTTCS-SCEEE-----ECTTTCCCCTTCEEEECTTS-SEEEEE-CSSEEEEEECCTTCSC
T ss_pred EEcCCCEEEEEECCEEEEEECCCCC-cceEE-----ecCcccccCceeEEEECCCC-CEEEEe-cCCeEEEEEecCcccc
Confidence 4557888888888999988887443 33332 2221 12257789999999 777776 4568888888743211
Q ss_pred cc--------cceeeccccCCCCccccccccccEEEEEEee---cCCEEEEE-eCCeEEEEEccCC-CCCeeeeeccccc
Q 010287 318 DT--------HSKLFEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILSR-DYMTLKLWDINMD-SGPVATFQVHEHL 384 (513)
Q Consensus 318 ~~--------~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp---~~~~l~~~-~~~~v~iwd~~~~-~~~~~~~~~~~~~ 384 (513)
.. ..+.+..... ......+|..+.|+| .+..|++- +|+.|++||+... .++. .+....
T Consensus 100 ~~~~~~~~~~q~~ty~l~~~------~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~-- 170 (452)
T 3pbp_A 100 VEDVSIQDAFQIFHYSIDEE------EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPN-- 170 (452)
T ss_dssp CCCHHHHHTTEEEEEEGGGC------C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCC--
T ss_pred CcccccccccceeEEEcCCc------ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccc--
Confidence 11 0112222110 011246899999999 45567764 4699999999852 2233 332111
Q ss_pred ccccccccccCCccceeeEEEeCCCCEEEEEe--CCCcEEEE
Q 010287 385 RPKLCDLYENDSIFDKFECCLSGDGGRVATGS--YSNLFRVF 424 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~vw 424 (513)
..+.....+.++.+++|.+++-.|...+ .+|.|+-.
T Consensus 171 ----~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 171 ----NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ----SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ----cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 1111123335577999999887777654 78888654
No 298
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.95 E-value=0.24 Score=45.89 Aligned_cols=184 Identities=7% Similarity=-0.087 Sum_probs=106.8
Q ss_pred CEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceee
Q 010287 245 ETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 324 (513)
Q Consensus 245 ~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 324 (513)
.+|+.+....|+..++...... . +......+..++|++.+..++.+-...+.|..+++............+
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~-~--------~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~ 154 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYT-S--------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI 154 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCE-E--------EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE
T ss_pred ceeEEeccceeEEEccCCccee-E--------eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE
Confidence 4566666788999998754322 1 122345688999998763566665667889988876422100001111
Q ss_pred ccccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceee
Q 010287 325 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 402 (513)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (513)
. ........+++.+.+..|+..+ . +.|.+.++. +.....+...... ....
T Consensus 155 ~------------~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~--g~~~~~l~~~~~~--------------~P~~ 206 (400)
T 3p5b_L 155 S------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFRENGS--------------KPRA 206 (400)
T ss_dssp C------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT--TCSEEEEEECSSC--------------CEEE
T ss_pred e------------CCCCCcccEEEEecCCceEEEECCCCeEEEEeCC--CCceEEEEeCCCC--------------Ccce
Confidence 1 1113578899998666565554 3 889988887 4433333211110 0137
Q ss_pred EEEeCCCCEEEEEe-C-CCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeee-cCCCeEEE
Q 010287 403 CCLSGDGGRVATGS-Y-SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRR 466 (513)
Q Consensus 403 ~~~s~~~~~l~~~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~ 466 (513)
+++.|.+.+|+... . .+.|...++... ...............++++++++.|..+ ...+.|..
T Consensus 207 iavdp~~g~ly~td~~~~~~I~~~~~dG~-~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~ 272 (400)
T 3p5b_L 207 IVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 272 (400)
T ss_dssp EEEETTTTEEEEEECSSSCCEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEecccCeEEEEeCCCCCEEEEEeCCCC-ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEE
Confidence 89999777666544 2 367888888743 2222333334566789999877766554 44566665
No 299
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.78 E-value=0.48 Score=46.75 Aligned_cols=202 Identities=14% Similarity=0.043 Sum_probs=100.4
Q ss_pred cccEEEEEEcCCCCEEEeec-CCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCcccccccccccc
Q 010287 35 VDIISAIEFDKSGDHLATGD-RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (513)
Q Consensus 35 ~~~V~~v~~sp~g~~latg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (513)
-.....++|++.+..|..+. ..+.|..+++.+.... ...+..-- .
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~----------------------~~v~~~~~------------~ 84 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV----------------------QNVVVSGL------------L 84 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C----------------------EEEECSSC------------S
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce----------------------EEEEeCCC------------C
Confidence 35578899999766666554 4567888886543210 00011100 3
Q ss_pred cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCC
Q 010287 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (513)
Q Consensus 114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 193 (513)
....|++.+. .+.++.+-...+.|.+.++.......+.... ...+..+++.|.+..+.
T Consensus 85 ~P~GlAvD~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~---------------l~~P~~Iavdp~~g~ly------ 142 (619)
T 3s94_A 85 SPDGLACDWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQE---------------LDQPRAIALDPSSGFMY------ 142 (619)
T ss_dssp CEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSS---------------CSCCCCEEEETTTTEEE------
T ss_pred CcCeEEEEec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCC---------------CCCCceEEEecCCCeEE------
Confidence 3667777431 2334444466789999998765433332111 12334667777644331
Q ss_pred CCCCCcCC-CCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeec
Q 010287 194 SNDSSFPP-GGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIV 270 (513)
Q Consensus 194 ~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~ 270 (513)
++. +..+.|...++.... +.......-.....++++++++.|..+ ..+.|...++.... ...+.
T Consensus 143 -----~tD~g~~~~I~r~~~dG~~-------~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~-~~~~~ 209 (619)
T 3s94_A 143 -----WTDWGEVPKIERAGMDGSS-------RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVV 209 (619)
T ss_dssp -----EEECSSSCEEEEEETTSCS-------CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE-EC---
T ss_pred -----EeccCCCCEEEEEECCCCc-------eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc-cEEEE
Confidence 111 112233333322111 111111223456889999987777777 47788888887432 22111
Q ss_pred ccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCc
Q 010287 271 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 314 (513)
Q Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 314 (513)
.+.......+++..+ .++.+-...+.|...|..++
T Consensus 210 -------~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 210 -------KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp -------------CCCEEESSS--EEEEECTTTCSEEEEESSSC
T ss_pred -------eCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCC
Confidence 111112235555443 45555455667777776554
No 300
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.66 E-value=0.17 Score=47.81 Aligned_cols=155 Identities=12% Similarity=0.021 Sum_probs=89.5
Q ss_pred CeEEEEEeCC-CCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE-------eecCCE
Q 010287 283 VITSAEFHPT-HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF-------ARNGRH 354 (513)
Q Consensus 283 ~i~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-------sp~~~~ 354 (513)
....|+|+|. +.+++++....+.|++.|+..+.+. ....... ........++| ++++..
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~----~l~~~~~---------~~~~~p~~ia~~~~~~~~d~~G~~ 206 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS----SPLNINT---------IPTNRIRSIAFNKKIEGYADEAEY 206 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE----EEECCTT---------SSCSBEEEEEECCCBTTTBCTTCE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE----EEEccCc---------cccCCCcEEEEeecccccCCCCCE
Confidence 4789999993 4356666555678999998876541 1111110 01135889999 999997
Q ss_pred EEEEeC-C-------eEEEEEccCCCCCe-----eeeecccccccccccccccCCccceeeEEEeCCCCE-EEEEeCCCc
Q 010287 355 ILSRDY-M-------TLKLWDINMDSGPV-----ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGSYSNL 420 (513)
Q Consensus 355 l~~~~~-~-------~v~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~ 420 (513)
|+++++ + .|.+++....+... ..+..... ...++++|++.. +++-..++.
T Consensus 207 lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~----------------p~giavdp~~g~LYvtd~~~g~ 270 (496)
T 3kya_A 207 MIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQ----------------CNGATIHPINGELYFNSYEKGQ 270 (496)
T ss_dssp EEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESC----------------CCCEEECTTTCCEEEEETTTTE
T ss_pred EEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCC----------------ceEEEEcCCCCeEEEEECCCCE
Confidence 777654 3 25566533212221 11211010 127889995555 445557788
Q ss_pred EEEEecC-------CCCc------c----c-eeec-CCCCceeEEEEcCCCCce-eeecCCCeEEE
Q 010287 421 FRVFGCS-------EGSA------E----S-TTLE-ASKNPMRRQVQTPSRPSR-PLGSLSGVVRR 466 (513)
Q Consensus 421 i~vwd~~-------~~~~------~----~-~~~~-~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~ 466 (513)
|+.+|+. ++.. . . ..+. +.......++++|+++.| ++-.....|+.
T Consensus 271 V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~k 336 (496)
T 3kya_A 271 VFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMR 336 (496)
T ss_dssp EEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEE
Confidence 9999997 4432 0 0 1111 223445789999999954 44445566655
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.50 E-value=0.019 Score=57.64 Aligned_cols=182 Identities=7% Similarity=-0.069 Sum_probs=95.0
Q ss_pred EEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeecc
Q 010287 247 FISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 326 (513)
Q Consensus 247 l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 326 (513)
|+.+..+.|+..++...... . +......+..++|++.+..++++-...+.|+.+++............+..
T Consensus 380 ll~~~~~~I~~id~~~~~~~-~--------~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~ 450 (699)
T 1n7d_A 380 LFFTNRHEVRKMTLDRSEYT-S--------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 450 (699)
T ss_dssp BCCCCTTC-CEECTTSCCEE-C--------CSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS
T ss_pred EEecCccceEEEeCCCCcce-e--------eeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC
Confidence 33444567777777643321 1 11123346788999876355555555788999988651100000111100
Q ss_pred ccCCCCccccccccccEEEEEEeecCCEEEEEe-C-CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEE
Q 010287 327 QEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 404 (513)
Q Consensus 327 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (513)
.......|++.+.+..|+.++ . +.|.++++. +.....+....... ...++
T Consensus 451 ------------~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d--g~~~~~l~~~~~~~--------------P~gia 502 (699)
T 1n7d_A 451 ------------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFREQGSK--------------PRAIV 502 (699)
T ss_dssp ------------CC--CCCEECCCSSSBCEECCTTTSCEEEEBSS--SCCEEEECCCSSCC--------------CCCEE
T ss_pred ------------CCCCcceEEEEeeCCcEEEEeccCCeEEEEecC--CCceEEEEeCCCCC--------------cceEE
Confidence 002345678886555554443 3 889998876 33333332111000 12788
Q ss_pred EeCCCCEEEEEe-C-CCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCcee-eecCCCeEEE
Q 010287 405 LSGDGGRVATGS-Y-SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP-LGSLSGVVRR 466 (513)
Q Consensus 405 ~s~~~~~l~~~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~ 466 (513)
++|.+.+|+... . .+.|.++++... .....+.........++++|+++.|. +-+..+.|..
T Consensus 503 vDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~ 566 (699)
T 1n7d_A 503 VDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 566 (699)
T ss_dssp CCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEE
T ss_pred EccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEE
Confidence 999766555443 2 267887777633 22122222234456899998766554 4445666766
No 302
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.42 E-value=0.84 Score=45.08 Aligned_cols=153 Identities=12% Similarity=0.005 Sum_probs=90.1
Q ss_pred eEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEE-eCCCcEEEEEc
Q 010287 235 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS-SSKGSIRLIDM 311 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~vwd~ 311 (513)
...+++.+.+..|+.+ ..+.|.+.++..... ..+. ...-.....++++|..+.++.+- +..+.|...++
T Consensus 82 P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~-------~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~ 153 (628)
T 4a0p_A 82 PEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLV-------WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAM 153 (628)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEE-------CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred cceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEE-------eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeC
Confidence 5578888766666655 478899999874332 1111 12234578999999653554443 22567777776
Q ss_pred CCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC--CeEEEEEccCCCCCeeeeecccccccccc
Q 010287 312 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLC 389 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
..... ...... ......+++++++..|+.++. +.|..+|+.. ...+.+......
T Consensus 154 dG~~~----~~l~~~-------------~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG--~~~~v~~~~l~~----- 209 (628)
T 4a0p_A 154 DGSER----TTLVPN-------------VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG--LNREVIADDLPH----- 209 (628)
T ss_dssp TSCSC----EEEECS-------------CSSEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEECCSC-----
T ss_pred CCCce----EEEECC-------------CCCcceEEEccccCEEEEEECCCCEEEEEcCCC--CceEEeeccCCC-----
Confidence 54321 111111 145788999998888877664 8899999873 222332211110
Q ss_pred cccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 010287 390 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 430 (513)
Q Consensus 390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 430 (513)
-..+++.. +.++++-...+.|...|..+++
T Consensus 210 ----------P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 210 ----------PFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp ----------EEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred ----------ceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 12566654 3444455567888888876653
No 303
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.39 E-value=0.53 Score=43.10 Aligned_cols=116 Identities=8% Similarity=0.027 Sum_probs=75.8
Q ss_pred cEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCee-----------eeecccccccccccccccCCccceeeEEEeCCC-
Q 010287 342 SISDIKFARNGRHILSRDYMTLKLWDINMDSGPVA-----------TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG- 409 (513)
Q Consensus 342 ~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~- 409 (513)
.+..+..+|+|.+|+..+...|.|-.+..+..... .+..... ....-.+|..+.|+|-+
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~---------~~~~~s~I~qVlWHPl~~ 137 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE---------EVGPKSSIKKVLFHPKSY 137 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC---------C--CCCCEEEEEECTTBG
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCc---------ccCCCCceeEEEeccccC
Confidence 46779999999999998888999999873111111 1111100 00011236689999954
Q ss_pred --CEEEEEeCCCcEEEEecCCCCccceeec---------CCCCceeEEEEcCCCCceee--ecCCCeEEE
Q 010287 410 --GRVATGSYSNLFRVFGCSEGSAESTTLE---------ASKNPMRRQVQTPSRPSRPL--GSLSGVVRR 466 (513)
Q Consensus 410 --~~l~~~~~dg~i~vwd~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~--~~~d~~i~~ 466 (513)
..|++-..|+.|++||+.........++ .....+.+++|..++-.|.. ...+|.|.-
T Consensus 138 ~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 138 RDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp GGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred CCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 5899999999999999986322222333 12256778999987765555 557788864
No 304
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.39 E-value=0.86 Score=44.93 Aligned_cols=158 Identities=8% Similarity=-0.044 Sum_probs=95.0
Q ss_pred CCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEE
Q 010287 233 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 310 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd 310 (513)
..+..++|++.+..|+.+ ..+.|..++++.......+ +.........+++.+.+.+++.+-...+.|.+.+
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v-------~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~ 112 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV-------VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSN 112 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEE-------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEE-------EeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEE
Confidence 347789999977777766 4788999998744211111 1222246889999996647777777789999999
Q ss_pred cCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC---CeEEEEEccCCCCCeeeeecccccccc
Q 010287 311 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY---MTLKLWDINMDSGPVATFQVHEHLRPK 387 (513)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~---~~v~iwd~~~~~~~~~~~~~~~~~~~~ 387 (513)
+..... +.+-... ......|+++|.+..|+..+. +.|...++. +.....+......
T Consensus 113 ~dG~~~-----~~l~~~~-----------l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d--G~~~~~l~~~~~~--- 171 (619)
T 3s94_A 113 LDGSLR-----KVLFWQE-----------LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--GSSRFIIINSEIY--- 171 (619)
T ss_dssp TTSCSC-----EEEECSS-----------CSCCCCEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEECSSCS---
T ss_pred CCCCCE-----EEEEeCC-----------CCCCceEEEecCCCeEEEeccCCCCEEEEEECC--CCceEEEEeCCCC---
Confidence 865331 1111111 134678999997665555442 566666655 4444333211110
Q ss_pred cccccccCCccceeeEEEeCCCCEEEEE-eCCCcEEEEecCCC
Q 010287 388 LCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEG 429 (513)
Q Consensus 388 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~ 429 (513)
.-..++++++++.|+.+ ...+.|..+++...
T Consensus 172 -----------~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 172 -----------WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT 203 (619)
T ss_dssp -----------SEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred -----------CCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence 01379999977666655 45678888888743
No 305
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.31 E-value=0.61 Score=42.30 Aligned_cols=56 Identities=9% Similarity=-0.032 Sum_probs=33.7
Q ss_pred eEEEeCCCCEEEEEeCCCcEEEEecCCCCcc-----ceeecCCCCceeEEEEcCCCCceeee
Q 010287 402 ECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-----STTLEASKNPMRRQVQTPSRPSRPLG 458 (513)
Q Consensus 402 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~ 458 (513)
.++| .+|.++++.-..+.|...++...... ...+-.....+..+++.|+|.++++.
T Consensus 272 G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 272 NLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp EEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred ceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 5666 46666666666777887777644211 11111223456788999998766654
No 306
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.28 E-value=1 Score=44.53 Aligned_cols=198 Identities=12% Similarity=0.012 Sum_probs=105.9
Q ss_pred ccEEEEEEcCCCCEEEe-ecCCCcEEEEEeeCCCCCCCccCccccccccccCCCcceEeccccCCCCccccccccccccc
Q 010287 36 DIISAIEFDKSGDHLAT-GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (513)
Q Consensus 36 ~~V~~v~~sp~g~~lat-g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (513)
..+..|+|++.+..|.. -..++.|..+++.+.... ..+...- ..
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~-----------------------~v~~~g~------------~~ 81 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE-----------------------HVVEFGL------------DY 81 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-----------------------EEECSSC------------SC
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE-----------------------EEEeCCC------------CC
Confidence 46789999997655554 446778888886543210 0011000 23
Q ss_pred ceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccccCCCcccCCCCcccCcccccCceeccCCCccccccCCCC
Q 010287 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (513)
Q Consensus 115 i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 194 (513)
...|++.+ ..+.++.+-...+.|.+.++.......+.... ...+..+++.|....+.
T Consensus 82 P~GlAvD~-~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~---------------l~~P~~iavdp~~G~lY------- 138 (628)
T 4a0p_A 82 PEGMAVDW-LGKNLYWADTGTNRIEVSKLDGQHRQVLVWKD---------------LDSPRALALDPAEGFMY------- 138 (628)
T ss_dssp CCEEEEET-TTTEEEEEETTTTEEEEEETTSTTCEEEECSS---------------CCCEEEEEEETTTTEEE-------
T ss_pred cceEEEEe-CCCEEEEEECCCCEEEEEecCCCcEEEEEeCC---------------CCCcccEEEccCCCeEE-------
Confidence 55666632 12334455466788888888765332222111 12234666776444331
Q ss_pred CCCCcCC-CCCCceeceeeccCCcccccceeeEeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceeeecc
Q 010287 195 NDSSFPP-GGVSSLRLPVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVD 271 (513)
Q Consensus 195 ~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~~~~ 271 (513)
++. +..+.|...++..... .... ..-.....++++++++.|..+ ..+.|...++..... +++
T Consensus 139 ----~tD~g~~~~I~r~~~dG~~~-------~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~- 203 (628)
T 4a0p_A 139 ----WTEWGGKPKIDRAAMDGSER-------TTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVI- 203 (628)
T ss_dssp ----EEECSSSCEEEEEETTSCSC-------EEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEE-
T ss_pred ----EeCCCCCCEEEEEeCCCCce-------EEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEe-
Confidence 111 1133444444332221 1111 223457899999988888877 478899999875433 221
Q ss_pred cCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCc
Q 010287 272 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 314 (513)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 314 (513)
.........+++.. + .++.+-...+.|...|..++
T Consensus 204 ------~~~l~~P~glav~~-~-~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 204 ------ADDLPHPFGLTQYQ-D-YIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp ------EECCSCEEEEEEET-T-EEEEEETTTTEEEEEETTTC
T ss_pred ------eccCCCceEEEEEC-C-EEEEecCCCCEEEEEECCCC
Confidence 11223455777765 3 56666556777777775544
No 307
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.01 E-value=0.74 Score=40.52 Aligned_cols=165 Identities=7% Similarity=0.085 Sum_probs=88.6
Q ss_pred CeEEEEeccCCCEEEE-E---c----CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe--CCCCeEEEEEeCC
Q 010287 234 HINSISNNSDGETFIS-A---D----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSSK 303 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s-~---~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~d 303 (513)
.|..-..+++.++++. | . .|.+.+|..+.... + .+++|......+... +....+|..+...
T Consensus 153 QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s--Q-------~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~ 223 (365)
T 2xzh_A 153 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--Q-------PIEGHAASFAQFKMEGNAEESTLFCFAVRG 223 (365)
T ss_dssp EEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE--E-------EECCSEEEEEEECCTTCSSCEEEEEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc--c-------eeeeeeeeeEEEecCCCCCCceEEEEEEec
Confidence 3666667778887664 2 1 46788998874332 2 456666544443332 2221344444332
Q ss_pred ---CcEEEEEcCCcc-ccccc-ceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeee
Q 010287 304 ---GSIRLIDMRQSA-LCDTH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVAT 377 (513)
Q Consensus 304 ---g~i~vwd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~ 377 (513)
+.+++-++.... ..... .+..+..-.+ ..-.+-..++..|+....+..-+. |.+++||+.+ +.++..
T Consensus 224 ~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fpp------ea~~DFPVamqvs~kygviyviTK~G~ihlyDleT-gt~i~~ 296 (365)
T 2xzh_A 224 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIYM 296 (365)
T ss_dssp TTEEEEEEEECSSCCTTCCCCCCEEEEECCCT------TCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEEEE
T ss_pred CCCcEEEEEEcCCCCCCCCCcccccceeeCCc------cccCCceEEEEecccCCEEEEEeCCcEEEEEEccc-CcEEEE
Confidence 588888874431 10000 1111111111 112245677889987777777665 9999999997 777765
Q ss_pred eecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 378 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
-+..... |+..+-+....-++.-...|.|.--.+...
T Consensus 297 nrIS~d~---------------iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 297 NRISGET---------------IFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EECCSSC---------------EEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred eccCCCc---------------eEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 5544433 223333333334444456666655555543
No 308
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.84 E-value=1 Score=40.80 Aligned_cols=58 Identities=7% Similarity=-0.047 Sum_probs=36.6
Q ss_pred eeEEEe-------CCCCEEEEEeCCCcEEEEecCCCCccc--ee-ecCCCCceeEEEEcCCCCceeee
Q 010287 401 FECCLS-------GDGGRVATGSYSNLFRVFGCSEGSAES--TT-LEASKNPMRRQVQTPSRPSRPLG 458 (513)
Q Consensus 401 ~~~~~s-------~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~-~~~~~~~v~~~~~~~~~~~l~~~ 458 (513)
..+.|. .+|.++++.-..+.|...++....... .. +......+..+++.|+|.++++.
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 367773 467777766677888888887532221 12 22224457789999998766655
No 309
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.73 E-value=0.16 Score=41.79 Aligned_cols=146 Identities=5% Similarity=-0.116 Sum_probs=80.1
Q ss_pred cEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcE
Q 010287 342 SISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 421 (513)
Q Consensus 342 ~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 421 (513)
.+..++|+|+|.+.++ .+|.++-.+..+ ... .........+. ..-++ ...++.|.|+|.+.++ .||.|
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t-~~~-~~W~~s~t~IG---~~Gw~----~F~a~~fD~~G~LYav--~dG~i 109 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPT-HDN-DNWMGRAKKIG---NGGWN----QFQFLFFDPNGYLYAV--SKDKL 109 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCC-STT-CCHHHHCEEEE---CSCGG----GCSEEEECTTSCEEEE--ETTEE
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCC-CCc-ccccccccEec---ccccc----cceEEEECCCCCEEEe--CCCEE
Confidence 5679999999997777 668766555432 111 11111110000 00000 0127889999987777 56988
Q ss_pred EEEecCCCCccc-----eee-cCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCcc--c-c-CCccc--cccCCee
Q 010287 422 RVFGCSEGSAES-----TTL-EASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSAL--D-A-NGNAF--DFSMKLL 489 (513)
Q Consensus 422 ~vwd~~~~~~~~-----~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~--~-~-~~~~~--~~~~~i~ 489 (513)
+-++..+..... ..+ ..--..+..+.+.|+|.+.+.. |+.+.- ...+... . + ....+ +....-+
T Consensus 110 yr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr--~~~P~~~~~~wl~~~~~~g~~g~~~yr 185 (236)
T 1tl2_A 110 YKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK--ALPPVSNQDNWLARATKIGQGGWDTFK 185 (236)
T ss_dssp EEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE--ECCCSSTTCCHHHHCEEEESSSGGGEE
T ss_pred EEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe--cCCCCCCCcccccccceeccCCcceEE
Confidence 877764322211 111 1122467889999999998888 676543 1222100 0 0 00010 1223456
Q ss_pred EEEEeCCCCEEEEE
Q 010287 490 HLAWHPSENSIACA 503 (513)
Q Consensus 490 ~~~~sp~~~~la~~ 503 (513)
.+.|.|++.+.++.
T Consensus 186 ~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 186 FLFFSSVGTLFGVQ 199 (236)
T ss_dssp EEEECTTSCEEEEE
T ss_pred EEEECCCCcEEEEe
Confidence 68899999998877
No 310
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.69 E-value=1 Score=39.67 Aligned_cols=201 Identities=12% Similarity=0.049 Sum_probs=101.9
Q ss_pred eEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC-------CCcEE
Q 010287 235 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-------KGSIR 307 (513)
Q Consensus 235 v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-------dg~i~ 307 (513)
|.-=.|-.+ +.|+--.+..|+.|+++......++++-.+ .+. ...|..-..+++. ++++..+- .|.+.
T Consensus 109 VvfWkWis~-~~L~lVT~taVyHWs~~~~s~P~kvFdR~~-~L~--~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~mQ 183 (365)
T 2xzh_A 109 VTFWKWISL-NTVALVTDNAVYHWSMEGESQPVKMFDRHS-SLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQ 183 (365)
T ss_dssp EEEEEECSS-SEEEEEESSEEEEEESSTTCCCEEEEECCG-GGT--TCEEEEEEECTTS-CEEEEEEEEEETTEEEEEEE
T ss_pred cEEEEecCC-CeEEEEcCCcEEEEcccCCCCCceeeecch-hcc--cceEEEEEECCCC-CEEEEEeEeccCCccceeEE
Confidence 333444433 345544678899999986545554443221 232 4667788888888 65554432 36778
Q ss_pred EEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee--cC-CEEEEEe---C-CeEEEEEccCC--CCCeeee
Q 010287 308 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR--NG-RHILSRD---Y-MTLKLWDINMD--SGPVATF 378 (513)
Q Consensus 308 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp--~~-~~l~~~~---~-~~v~iwd~~~~--~~~~~~~ 378 (513)
+|..+.+.. ..++ +|.+....+.+.. .. .+++-+. . +.++|-++..+ +.+....
T Consensus 184 LYS~er~~s-----Q~ie------------Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~k 246 (365)
T 2xzh_A 184 LYSVDRKVS-----QPIE------------GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK 246 (365)
T ss_dssp EEETTTTEE-----EEEC------------CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCC
T ss_pred EEeeccccc-----ceee------------eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCccc
Confidence 888765431 2222 2323222222211 11 1222221 1 68889888542 1111100
Q ss_pred ecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeee
Q 010287 379 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 458 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 458 (513)
+.-+ .. ...-..++. +| ++..++.-..++.-+.-|.|++||++++..+ ..-....+++...+......-++..
T Consensus 247 k~vd--i~-fppea~~DF--PV-amqvs~kygviyviTK~G~ihlyDleTgt~i-~~nrIS~d~iF~ta~~~~~~Gi~~V 319 (365)
T 2xzh_A 247 KAVD--VF-FPPEAQNDF--PV-AMQISEKHDVVFLITKYGYIHLYDLETGTCI-YMNRISGETIFVTAPHEATAGIIGV 319 (365)
T ss_dssp EEEE--EC-CCTTCTTCC--EE-EEEEETTTTEEEEEETTSEEEEEETTTCCEE-EEEECCSSCEEEEEEEGGGTEEEEE
T ss_pred ccce--ee-CCccccCCc--eE-EEEecccCCEEEEEeCCcEEEEEEcccCcEE-EEeccCCCceEEecccCCCCcEEEE
Confidence 0000 00 000001111 12 6888888888888899999999999999443 4444455555444443333333333
Q ss_pred cCCCeE
Q 010287 459 SLSGVV 464 (513)
Q Consensus 459 ~~d~~i 464 (513)
...|.|
T Consensus 320 nr~GqV 325 (365)
T 2xzh_A 320 NRKGQV 325 (365)
T ss_dssp ETTCEE
T ss_pred cCCCEE
Confidence 344443
No 311
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.48 E-value=1.4 Score=39.88 Aligned_cols=118 Identities=10% Similarity=0.083 Sum_probs=60.0
Q ss_pred CCeEEEEeccCCC-EEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCC---CCeEEEEEeC------
Q 010287 233 YHINSISNNSDGE-TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSS------ 302 (513)
Q Consensus 233 ~~v~~~~~~~~~~-~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~------ 302 (513)
.....++|.|+++ ++++-..|.|++++.. +.....+.++ +............++++|+ +..++++-+.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~-~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGV-PDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSC-CCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCC-cccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 3468999999999 7766667999999854 2211111111 0011122345789999995 3255555433
Q ss_pred -CCcEEEEEcCCccc-ccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEE
Q 010287 303 -KGSIRLIDMRQSAL-CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 358 (513)
Q Consensus 303 -dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~ 358 (513)
...|..|++..... .......+...... .-..|. -..+.|.|||.+.++-
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~----~~~~h~--~~~l~~~pdG~Lyv~~ 147 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKL----STGNHF--GGRLVFDGKGYLFIAL 147 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCC----BSSSCC--CCCEEECSSSEEEEEE
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCC----CCCccc--CccEEECCCCcEEEEE
Confidence 23565566543211 00001111111000 001122 3569999999766663
No 312
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.47 E-value=1.4 Score=39.76 Aligned_cols=73 Identities=10% Similarity=0.111 Sum_probs=46.7
Q ss_pred cCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC-cccccccceeeccccCCCCccccccccccEEEEEEee-cCCEEEEE
Q 010287 281 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSR 358 (513)
Q Consensus 281 ~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~l~~~ 358 (513)
-...+.++|+||+..++++-+..+.|..|++.. +.... .+.+.. .+..-.+++.+ +|.+.+++
T Consensus 220 l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~--~~~~~~-------------~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 220 FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTP--LRVLSF-------------DTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE--EEEEEC-------------SSEEEEEEECTTTCCEEEEE
T ss_pred CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEec--CEEEeC-------------CCCCceEEEeCCCCcEEEEe
Confidence 345789999999955555666788999999863 22211 122211 14577889999 59888866
Q ss_pred e-C-CeEEEEEc
Q 010287 359 D-Y-MTLKLWDI 368 (513)
Q Consensus 359 ~-~-~~v~iwd~ 368 (513)
. + +.|..|+.
T Consensus 285 ~~~g~~v~~~~P 296 (355)
T 3sre_A 285 HPNGMRIFFYDA 296 (355)
T ss_dssp ESCHHHHHSCCT
T ss_pred cCCceEEEEECC
Confidence 4 3 45544543
No 313
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.34 E-value=1.6 Score=39.56 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=21.9
Q ss_pred ccEEEEEEcCCCCEEEeecCCCcEEEEEe
Q 010287 36 DIISAIEFDKSGDHLATGDRGGRVVLFER 64 (513)
Q Consensus 36 ~~V~~v~~sp~g~~latg~~dg~i~iw~~ 64 (513)
.....|+|.|+|++|.++...|.|++++.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~ 46 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQA 46 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEET
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeC
Confidence 45589999999983444556789998874
No 314
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.23 E-value=0.6 Score=38.44 Aligned_cols=158 Identities=7% Similarity=-0.116 Sum_probs=81.8
Q ss_pred CeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCe
Q 010287 283 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMT 362 (513)
Q Consensus 283 ~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~ 362 (513)
.+..++|+|++ .+.+. .+|.+.-.+..+... ..+-..... .--.+- ....++.|.|+|.+.++ ++|.
T Consensus 42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~-----~~W~~s~t~---IG~~Gw-~~F~a~~fD~~G~LYav-~dG~ 108 (236)
T 1tl2_A 42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDN-----DNWMGRAKK---IGNGGW-NQFQFLFFDPNGYLYAV-SKDK 108 (236)
T ss_dssp TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTT-----CCHHHHCEE---EECSCG-GGCSEEEECTTSCEEEE-ETTE
T ss_pred cceeEEECCCc-cEEEE--eCCeEEEECCCCCCc-----ccccccccE---eccccc-ccceEEEECCCCCEEEe-CCCE
Confidence 56799999988 66665 777766655543221 001000000 000000 11477899999998888 7788
Q ss_pred EEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc-----cceeec
Q 010287 363 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA-----ESTTLE 437 (513)
Q Consensus 363 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~ 437 (513)
|+-++-.+.+.. ........+ ......++..+.|.|+|.+.+.. |+.++-....+... ....+.
T Consensus 109 iyr~~pP~~~~~--~Wl~~a~~v-------g~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g 177 (236)
T 1tl2_A 109 LYKASPPQSDTD--NWIARATEV-------GSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIG 177 (236)
T ss_dssp EEEESCCCSTTC--CHHHHSEEE-------ECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEE
T ss_pred EEEeCCCcCCCC--ceeccccEe-------ccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceec
Confidence 877765321111 110000000 00011124589999999877666 77754433332211 011112
Q ss_pred -CCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 438 -ASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 438 -~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
......+.+.+.+++.+.+.. ++.+..
T Consensus 178 ~~g~~~yr~l~f~~~G~l~~v~--~g~~Y~ 205 (236)
T 1tl2_A 178 QGGWDTFKFLFFSSVGTLFGVQ--GGKFYE 205 (236)
T ss_dssp SSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred cCCcceEEEEEECCCCcEEEEe--CCeEEe
Confidence 222334456788888877766 776655
No 315
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.18 E-value=1.9 Score=39.66 Aligned_cols=166 Identities=7% Similarity=0.087 Sum_probs=93.6
Q ss_pred CCeEEEEeccCCCEEEE-E---c----CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeC--CCCeEEEEEeC
Q 010287 233 YHINSISNNSDGETFIS-A---D----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSS 302 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s-~---~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~~~ 302 (513)
..|..-..+++.++++. | . .|.+.+|..+..... .+++|......+.... ....+|..+..
T Consensus 151 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ---------~ieGhaa~F~~~~~~g~~~~~~lf~fa~r 221 (494)
T 1bpo_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ---------PIEGHAASFAQFKMEGNAEESTLFCFAVR 221 (494)
T ss_dssp CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE---------EECCSEEEEEEEECTTCSSEEEEEEEEEC
T ss_pred ceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc---------hheeeeeeeEEEecCCCCCCceEEEEEEe
Confidence 34666667788887764 2 1 467889988744322 4577766555544432 11134444444
Q ss_pred C---CcEEEEEcCCccccc-cc-ceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCee
Q 010287 303 K---GSIRLIDMRQSALCD-TH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVA 376 (513)
Q Consensus 303 d---g~i~vwd~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~ 376 (513)
. +.+++-++....... .. .+..+..-.+ ..-..-..++..|+....+..-+. |.+++||+.+ +.++.
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp------e~~~DFPvamqvs~kygviyviTK~G~i~lyDleT-gt~i~ 294 (494)
T 1bpo_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIY 294 (494)
T ss_dssp STTCCEEEEEECSCCCTTCCCCCCEEEECCCCT------TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEEE
T ss_pred cCCCcEEEEEEcCCCccCCCCccceeeeeeCCc------ccccCceeEEEecccCCEEEEEecCceEEEEeccc-ceeee
Confidence 3 788888885431000 00 1111111111 111245677899998777777665 9999999997 77776
Q ss_pred eeecccccccccccccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 010287 377 TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 429 (513)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 429 (513)
.-+..... |+..+-.....-++.-...|.|.--.+...
T Consensus 295 ~nrIs~~~---------------iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 295 MNRISGET---------------IFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEECCSSC---------------EEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred eecccCCc---------------eEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 55544433 234444444445555557777766665543
No 316
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.04 E-value=1.4 Score=41.40 Aligned_cols=117 Identities=11% Similarity=0.101 Sum_probs=62.5
Q ss_pred CCeEEEEeccCCCEEEEEcC-CeEEEEEcCCCcceeeecccCcccc--ccccCCeEEEEEeCC---CCeEEEEEeC----
Q 010287 233 YHINSISNNSDGETFISADD-LRINLWNLEISNQSFNIVDVKPANM--EDLTEVITSAEFHPT---HCNMLAYSSS---- 302 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~---~~~~l~~~~~---- 302 (513)
...+.++|.|+|+++++-.. +.|++++..++... .+..+. ..+ .........|+|+|+ +..++++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~-~~~~~~-~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK-TVFQVP-EIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECT-TCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe-EEecCC-ccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34679999999998887754 57888876543321 111111 011 113456789999995 4255555442
Q ss_pred --------CCcEEEEEcCCccc-ccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe
Q 010287 303 --------KGSIRLIDMRQSAL-CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 359 (513)
Q Consensus 303 --------dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~ 359 (513)
...|.-|++..... .......+..... -..| ....|.|.|||.+.++..
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~------~~~H--~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS------SKDH--QSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC------CSSC--CEEEEEECTTSCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC------CCCC--CCCeEeECCCCeEEEEEC
Confidence 23455555432210 0110111211110 0112 468899999998877743
No 317
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.85 E-value=2.1 Score=38.42 Aligned_cols=119 Identities=11% Similarity=0.117 Sum_probs=60.6
Q ss_pred EeeccccCCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCccee-eec-------c-cCc-cccccccCCeEEEEEeCCC
Q 010287 226 IYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSF-NIV-------D-VKP-ANMEDLTEVITSAEFHPTH 293 (513)
Q Consensus 226 ~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~-~~~-------~-~~~-~~~~~~~~~i~~~~~~~~~ 293 (513)
.+..+|.. ...++|+|+++++++- .++.-.|-.+..+...- ... . ..| ..+..+......++|.. +
T Consensus 196 i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~-g 273 (347)
T 3das_A 196 VYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE-G 273 (347)
T ss_dssp EEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET-T
T ss_pred EEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc-C
Confidence 44567765 5689999988776663 24322333333222110 000 0 001 01111123567777774 4
Q ss_pred CeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe
Q 010287 294 CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 359 (513)
Q Consensus 294 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~ 359 (513)
.+++..-..+.|....+.......+... ++.+....+..|...|||.++++.+
T Consensus 274 -~~~~~~l~~~~l~~v~~~~~~~~~~~e~------------~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 274 -SVWMAGLRGERLWRIPLKGTAAAADPQA------------FLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp -EEEEEESTTCSEEEEEEETTEESSCCEE------------ESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred -ceeeccccCCEEEEEEecCCceecceEE------------eecCCCCCccEEEECCCCcEEEEEc
Confidence 6666666666666556544321111111 1222236799999999998777644
No 318
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=94.55 E-value=2.4 Score=37.83 Aligned_cols=129 Identities=10% Similarity=0.117 Sum_probs=72.5
Q ss_pred eEEEEe--ccC-CC-EEEEE-cCCeEEEEEcCCC---cceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcE
Q 010287 235 INSISN--NSD-GE-TFISA-DDLRINLWNLEIS---NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 306 (513)
Q Consensus 235 v~~~~~--~~~-~~-~l~s~-~d~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 306 (513)
+..+|+ ++. ++ ++++. .+|.+..|++... ....+++ +++. ....+..+...+.. ..|+.+-++.-|
T Consensus 130 pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lV----R~f~-lgsq~EgcvvDd~~-g~Lyv~eEd~GI 203 (355)
T 3amr_A 130 VYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKV----RAFK-MNSQTEGMAADDEY-GRLYIAEEDEAI 203 (355)
T ss_dssp CCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEE----EEEE-CSSCEEEEEEETTT-TEEEEEETTTEE
T ss_pred eeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEE----EEec-CCCCcceEEEcCCC-CeEEEecccceE
Confidence 455666 664 44 34444 6899999988432 1111111 1222 23568888899877 688888888777
Q ss_pred EEEEcCCccc-ccccceeeccccCCCCccccccccccEEEEEEe--ecCC-EEEEEe-C-CeEEEEEccCCCCCeeeee
Q 010287 307 RLIDMRQSAL-CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA--RNGR-HILSRD-Y-MTLKLWDINMDSGPVATFQ 379 (513)
Q Consensus 307 ~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s--p~~~-~l~~~~-~-~~v~iwd~~~~~~~~~~~~ 379 (513)
..++.+-... ..+.+..+.. ......+..|++- ++++ +|++++ . ..+.+||.....+.+..+.
T Consensus 204 w~~da~p~~~~~~~~v~~~~~----------g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 204 WKFSAEPDGGSNGTVIDRADG----------RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEECSTTSCSCCEEEEEBSS----------SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEEeCCcCCCCCceEEEEecC----------CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 7777542110 0011111111 0111357778774 5666 666655 3 8999999963355555554
No 319
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.44 E-value=2.4 Score=37.28 Aligned_cols=124 Identities=7% Similarity=0.001 Sum_probs=67.5
Q ss_pred EEEeecCCEEEEEe---CCeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEEeC-CCcE
Q 010287 346 IKFARNGRHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLF 421 (513)
Q Consensus 346 i~~sp~~~~l~~~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i 421 (513)
..|++++++|+-.+ ++.-.||-+...+...+.+..+.. ..++++++.|+-.+. ...|
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~-------------------~~~~~~g~~iy~t~~g~~~I 169 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL-------------------FTCNTSDRYFYYNNPKNGQL 169 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC-------------------CCSEEETTEEEEECTTTCCE
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc-------------------eEeeEECCEEEEEeCCCceE
Confidence 36788999888765 344455555443554444443321 235678888775554 5678
Q ss_pred EEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCC--eEEE--ecCCCCCccccCCccccccCCeeEEEEeCCC
Q 010287 422 RVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG--VVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSE 497 (513)
Q Consensus 422 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~ 497 (513)
++-++..+... ..+++ +.. ..+.|++++|+-...++ .|.. ..+.... ... +..+ ..|+|++
T Consensus 170 y~~~l~g~~~~-~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~---~Lt-----~~~~--~~~~~~g 234 (302)
T 3s25_A 170 YRYDTASQSEA-LFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPV---VLT-----EANI--EHYNVYG 234 (302)
T ss_dssp EEEETTTTEEE-EEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCE---ECS-----CSCE--EEEEEET
T ss_pred EEEECCCCCEE-EEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeE---EEe-----CCCc--ceEEECC
Confidence 88887755322 22322 222 23558899887655432 4444 2222211 111 2223 3478888
Q ss_pred CEEEEE
Q 010287 498 NSIACA 503 (513)
Q Consensus 498 ~~la~~ 503 (513)
++|.-+
T Consensus 235 ~~Iy~~ 240 (302)
T 3s25_A 235 SLIFYQ 240 (302)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 888754
No 320
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.10 E-value=3.5 Score=37.94 Aligned_cols=194 Identities=12% Similarity=0.064 Sum_probs=101.9
Q ss_pred CEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC-------CCcEEEEEcCCcccc
Q 010287 245 ETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-------KGSIRLIDMRQSALC 317 (513)
Q Consensus 245 ~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-------dg~i~vwd~~~~~~~ 317 (513)
+.|+--.+..|+.|+++......++++-.+ .+. ...|..-..+++. ++++..+- .|.+.+|..+.+..
T Consensus 117 ~~l~lVT~taVyHWsi~~~s~P~kvFdR~~-~L~--~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~mQLYS~er~~s- 191 (494)
T 1bpo_A 117 NTVALVTDNAVYHWSMEGESQPVKMFDRHS-SLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKVS- 191 (494)
T ss_dssp TEEEEECSSEEEEEESSSSCCCEEEEECCG-GGT--TCEEEEEEECTTS-SEEEEEEEEEETTEEEEEEEEEESTTCCE-
T ss_pred CeEEEEcCCeeEEecccCCCCchhheecch-hcc--cceEEEEEECCCC-CeEEEEeecccCCcccceEEEeecccccc-
Confidence 355555678899999976444544443221 222 4667788888888 66554332 46778888765431
Q ss_pred cccceeeccccCCCCccccccccccEEEEEEeec---CCEEEEEe----CCeEEEEEccCCCCCeeeeeccccccccccc
Q 010287 318 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILSRD----YMTLKLWDINMDSGPVATFQVHEHLRPKLCD 390 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~---~~~l~~~~----~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 390 (513)
..+ .+|.+....+.+..+ ..+++-+. .+.++|.++..+...-..+........ ...
T Consensus 192 ----Q~i------------eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~-fpp 254 (494)
T 1bpo_A 192 ----QPI------------EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF-FPP 254 (494)
T ss_dssp ----EEE------------CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECC-CCT
T ss_pred ----chh------------eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeee-CCc
Confidence 222 333333333332211 11222232 278999998642111011100000000 000
Q ss_pred ccccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeE
Q 010287 391 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVV 464 (513)
Q Consensus 391 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 464 (513)
...++. +| ++..++.-..+..-+.-|.|++||++++..+ ..-....+++...+......-++.....|.|
T Consensus 255 e~~~DF--Pv-amqvs~kygviyviTK~G~i~lyDleTgt~i-~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 255 EAQNDF--PV-AMQISEKHDVVFLITKYGYIHLYDLETGTCI-YMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp TSTTCC--EE-EEEEETTTTEEEEEETTSEEEEEETTTCCEE-EEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred ccccCc--ee-EEEecccCCEEEEEecCceEEEEecccceee-eeecccCCceEEecccCCCCcEEEEccCceE
Confidence 001111 12 6888988888888999999999999999544 3444555555554444444444444444444
No 321
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.02 E-value=3.2 Score=37.19 Aligned_cols=116 Identities=11% Similarity=0.097 Sum_probs=64.0
Q ss_pred CCeEEEEeccCCCEEEEEc-CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCC---CCeEEEEEe--CCCcE
Q 010287 233 YHINSISNNSDGETFISAD-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSS--SKGSI 306 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~--~dg~i 306 (513)
...+.++|.|+|.++++-. .|.|++++...+... .+..+ +............|+++|+ +..++++-+ .++.|
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~~~-~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELGEV-PGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEEC-TTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eeccc-CceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 4478999999999888885 999999986543321 11101 1112233566899999995 214444332 34555
Q ss_pred EEEEcCCcc----cccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEE
Q 010287 307 RLIDMRQSA----LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 358 (513)
Q Consensus 307 ~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~ 358 (513)
.-|.+..+. ........+..... -..| .-..|.|.|||.+.++.
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~------~~~H--~g~~l~fgpDG~Lyvt~ 157 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPK------GVIH--NGGRIAFGPDKMLYAGT 157 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECC------CSSC--CCCCEEECTTSCEEEEC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCC------CCCc--cCccccCCCCCCEEEEE
Confidence 556554421 11111111211100 0112 24569999999887773
No 322
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.68 E-value=3.7 Score=38.58 Aligned_cols=67 Identities=9% Similarity=0.048 Sum_probs=37.0
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeec---CCEEEE
Q 010287 282 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILS 357 (513)
Q Consensus 282 ~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~---~~~l~~ 357 (513)
.....++|.|++ +++++-...+.|.+++..++... .+..+...-. .......+..|+|+|+ +..|..
T Consensus 27 ~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~--~~~~~~~~~~------~~~g~~Gllgia~~Pdf~~~g~lYv 96 (454)
T 1cru_A 27 NKPHALLWGPDN-QIWLTERATGKILRVNPESGSVK--TVFQVPEIVN------DADGQNGLLGFAFHPDFKNNPYIYI 96 (454)
T ss_dssp SSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEE--EEEECTTCCC------CTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred CCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEe--EEecCCcccc------ccCCCCceeEEEECCCcCcCCEEEE
Confidence 356799999998 76665444457888876544321 1111111000 0001246789999995 444443
No 323
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=93.63 E-value=3.4 Score=36.13 Aligned_cols=23 Identities=9% Similarity=0.091 Sum_probs=16.3
Q ss_pred CCCeEEEEEeCC-----CcEEEEEcCCcc
Q 010287 292 THCNMLAYSSSK-----GSIRLIDMRQSA 315 (513)
Q Consensus 292 ~~~~~l~~~~~d-----g~i~vwd~~~~~ 315 (513)
++ ++++.|+.+ ..+.+||+.+..
T Consensus 159 ~~-~iyv~GG~~~~~~~~~~~~~d~~~~~ 186 (301)
T 2vpj_A 159 SG-VIYCLGGYDGLNILNSVEKYDPHTGH 186 (301)
T ss_dssp TT-EEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred CC-EEEEECCCCCCcccceEEEEeCCCCc
Confidence 45 778887765 457888887654
No 324
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.95 E-value=4.5 Score=35.53 Aligned_cols=135 Identities=7% Similarity=0.008 Sum_probs=69.4
Q ss_pred EeccCCCEEEEEc---CC--eEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeC-CCcEEEEEcC
Q 010287 239 SNNSDGETFISAD---DL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMR 312 (513)
Q Consensus 239 ~~~~~~~~l~s~~---d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~vwd~~ 312 (513)
.|+++++.|+-.+ ++ .|..-++.... ... +..+.. ..++|++ ..|+..+. ...|.+-++.
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~--------lt~~~~----~~~~~~g-~~iy~t~~g~~~Iy~~~l~ 175 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKK--------IKNHYL----FTCNTSD-RYFYYNNPKNGQLYRYDTA 175 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEE--------EESSCC----CCSEEET-TEEEEECTTTCCEEEEETT
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEE--------EeCCCc----eEeeEEC-CEEEEEeCCCceEEEEECC
Confidence 5677777777553 33 45445554222 211 122221 3457777 45554444 5677777765
Q ss_pred CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC---CeEEEEEccCCCCCeeeeecccccccccc
Q 010287 313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY---MTLKLWDINMDSGPVATFQVHEHLRPKLC 389 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
.+.. .+.+++ ... ..++|++.+|+-.+. ..|..-++. +.....+....
T Consensus 176 g~~~----~~l~~~---------------~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ld--G~~~~~Lt~~~------- 226 (302)
T 3s25_A 176 SQSE----ALFYDC---------------NCY-KPVVLDDTNVYYMDVNRDNAIVHVNIN--NPNPVVLTEAN------- 226 (302)
T ss_dssp TTEE----EEEECS---------------CEE-EEEEEETTEEEEEEGGGTTEEEEECSS--SCCCEECSCSC-------
T ss_pred CCCE----EEEeCC---------------Ccc-ceeeecCCEEEEEEcCCCcEEEEEECC--CCCeEEEeCCC-------
Confidence 5432 111221 122 235699998886542 345444544 44444442111
Q ss_pred cccccCCccceeeEEEeCCCCEEEEEeC--CCcEEEEecCC
Q 010287 390 DLYENDSIFDKFECCLSGDGGRVATGSY--SNLFRVFGCSE 428 (513)
Q Consensus 390 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~ 428 (513)
...|+|++++|+-++. .+.|..-++..
T Consensus 227 ------------~~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 227 ------------IEHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp ------------EEEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred ------------cceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 2358888988876532 35566656653
No 325
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=92.02 E-value=16 Score=39.58 Aligned_cols=130 Identities=7% Similarity=0.133 Sum_probs=69.6
Q ss_pred CeEEEEeccCCCEEEE-E-c------CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEe--CCCCeEEEEEeC-
Q 010287 234 HINSISNNSDGETFIS-A-D------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSS- 302 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s-~-~------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~- 302 (513)
.|..-..+++.++++. | . .|.+.+|..+..... .+++|......+... +....+|..+..
T Consensus 152 QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ---------~iegha~~F~~~~~~~~~~~~~l~~f~~~~ 222 (1630)
T 1xi4_A 152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ---------PIEGHAASFAQFKMEGNAEESTLFCFAVRG 222 (1630)
T ss_pred eeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch---------hhhHhHhhhheeccCCCCCCceEEEEEEec
Confidence 3556666777777663 2 1 478889988744322 456666555444442 222133333322
Q ss_pred --CCcEEEEEcCCccccc-cc-ceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC-CeEEEEEccCCCCCeee
Q 010287 303 --KGSIRLIDMRQSALCD-TH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVAT 377 (513)
Q Consensus 303 --dg~i~vwd~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~-~~v~iwd~~~~~~~~~~ 377 (513)
.+.+++-++....... .. .+..+..-.+ .....-..++..|+....+..-+. |.+.+||+.+ +..+..
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~------~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t-~~~i~~ 295 (1630)
T 1xi4_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIYM 295 (1630)
T ss_pred CCCceEEEEecCCCccCCCCCccccccccCCc------ccccCcceEEEeccccCEEEEEecCceEEEEeccc-chhhhh
Confidence 2688888875430000 00 0011110000 011234566888887666666665 9999999997 666654
Q ss_pred ee
Q 010287 378 FQ 379 (513)
Q Consensus 378 ~~ 379 (513)
-+
T Consensus 296 ~r 297 (1630)
T 1xi4_A 296 NR 297 (1630)
T ss_pred cc
Confidence 43
No 326
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=91.19 E-value=19 Score=38.96 Aligned_cols=178 Identities=12% Similarity=0.073 Sum_probs=88.9
Q ss_pred EEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEe-------CCCcEEEEEcCCccccc
Q 010287 246 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-------SKGSIRLIDMRQSALCD 318 (513)
Q Consensus 246 ~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-------~dg~i~vwd~~~~~~~~ 318 (513)
.|+--.+..|+.|++.......++++-. ..+. ...|..-..+++. ++++..+ ..|.+.+|....+..
T Consensus 118 ~l~lVT~~aVyHW~~~~~s~P~k~fdR~-~~L~--~~QIinY~~d~~~-kW~~l~gi~~~~~~v~G~mQLyS~er~~s-- 191 (1630)
T 1xi4_A 118 TVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKVS-- 191 (1630)
T ss_pred eeEEEcCCeEEEeccCCCCccHHHHhcc-hhcc--cCeeEEeeeCCCC-CeEEEEeeccCCCcccceeeeeecccccc--
Confidence 4444466789999997544343333211 1222 4567777788887 6655433 357888888765432
Q ss_pred ccceeeccccCCCCccccccccccEEEEEEe--ec-CCEEEEEe----CCeEEEEEccCCCCCeeeeecccccccccccc
Q 010287 319 THSKLFEEQEAPGTRSFFTEIIASISDIKFA--RN-GRHILSRD----YMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 391 (513)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s--p~-~~~l~~~~----~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
.. +.||.+....+... +. ...++.+. .+.++|-++..+...-..+......+. ...-
T Consensus 192 ---Q~------------iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~-~~~~ 255 (1630)
T 1xi4_A 192 ---QP------------IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF-FPPE 255 (1630)
T ss_pred ---hh------------hhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcccccccc-CCcc
Confidence 12 23333333333222 11 12222221 268888888542000011100000000 0000
Q ss_pred cccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEc
Q 010287 392 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQT 449 (513)
Q Consensus 392 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 449 (513)
..++. +| ++..++.-..+..-+.-|.|++||+.++..+ ..-.....+|...+..
T Consensus 256 ~~~Df--pv-~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i-~~~ris~~~iF~~~~~ 309 (1630)
T 1xi4_A 256 AQNDF--PV-AMQISEKHDVVFLITKYGYIHLYDLETGTCI-YMNRISGETIFVTAPH 309 (1630)
T ss_pred cccCc--ce-EEEeccccCEEEEEecCceEEEEecccchhh-hhccccCCceEEeccC
Confidence 01111 12 6778888888888889999999999998544 2223334444433333
No 327
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=90.19 E-value=6.2 Score=37.63 Aligned_cols=113 Identities=10% Similarity=0.040 Sum_probs=68.6
Q ss_pred cEEEEEEeecCCEEEEEeC--CeEEEEEccC-----CCCC---eeeeecccccccccccccccCCccceeeEEEeCCCCE
Q 010287 342 SISDIKFARNGRHILSRDY--MTLKLWDINM-----DSGP---VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 411 (513)
Q Consensus 342 ~v~~i~~sp~~~~l~~~~~--~~v~iwd~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 411 (513)
....+..+|||+++++++. .++.++|++. ..+. ...+.+.... . ..-...+|.++|.-
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~--G----------lGPlHt~Fd~~G~a 391 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL--G----------LGPLHTTFDGRGNA 391 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC--C----------SCEEEEEECSSSEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC--C----------CcccEEEECCCCce
Confidence 4567889999999999774 9999999874 1111 0111110000 0 01236899999955
Q ss_pred EEEEeCCCcEEEEecCCC---------CccceeecCCCCceeEEE-----EcCCCCceeee---cCCCeEEE
Q 010287 412 VATGSYSNLFRVFGCSEG---------SAESTTLEASKNPMRRQV-----QTPSRPSRPLG---SLSGVVRR 466 (513)
Q Consensus 412 l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~~v~~~~-----~~~~~~~l~~~---~~d~~i~~ 466 (513)
..+---|..|.-|++... ..++..+..|-.+-.-.+ ..++|+||++. |.|+.+.+
T Consensus 392 YTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~v 463 (638)
T 3sbq_A 392 YTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPV 463 (638)
T ss_dssp EEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCC
T ss_pred EeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCC
Confidence 556668999999998753 123344555554432222 26899999886 34555444
No 328
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=89.20 E-value=26 Score=37.43 Aligned_cols=77 Identities=8% Similarity=0.041 Sum_probs=45.6
Q ss_pred CCeEEEEeccC------CCEEEEE-c-CCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeC-CCCeEEEEEeCC
Q 010287 233 YHINSISNNSD------GETFISA-D-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSK 303 (513)
Q Consensus 233 ~~v~~~~~~~~------~~~l~s~-~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~d 303 (513)
..|.|+++.+. +++++.| . |++++++++.+.+.... . .+.. ...+.++.+.. .+..++..|-.|
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~-~-----~L~~-~~~p~si~l~~~~~~~~L~igl~d 626 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHK-E-----MLGG-EIIPRSILMTTFESSHYLLCALGD 626 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEE-E-----ECCS-SCCEEEEEEEEETTEEEEEEEETT
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEE-E-----ECCC-CCCCcEEEEEEeCCCcEEEEEeCC
Confidence 45888888753 4688888 4 99999999985433211 1 1111 12334443331 223678888899
Q ss_pred CcEEEEEc--CCccc
Q 010287 304 GSIRLIDM--RQSAL 316 (513)
Q Consensus 304 g~i~vwd~--~~~~~ 316 (513)
|.+..+.+ .++.+
T Consensus 627 G~l~~~~~d~~tg~l 641 (1158)
T 3ei3_A 627 GALFYFGLNIETGLL 641 (1158)
T ss_dssp SEEEEEEECTTTCCE
T ss_pred CeEEEEEEcCCCCcc
Confidence 98866554 34444
No 329
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=88.95 E-value=13 Score=33.69 Aligned_cols=160 Identities=11% Similarity=0.060 Sum_probs=80.2
Q ss_pred eEEEEEcCCCc-ceeeecccCccccccccCCeEEEEEe---CC---CCeEEE-EEeCCCcEEEEEcCCcccccccceeec
Q 010287 254 RINLWNLEISN-QSFNIVDVKPANMEDLTEVITSAEFH---PT---HCNMLA-YSSSKGSIRLIDMRQSALCDTHSKLFE 325 (513)
Q Consensus 254 ~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~---~~---~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~ 325 (513)
.|.+||+.+.. +.++.+.+.+.... ..+.+..+.+. |. +..++. +=+..+-|.|+|+.+++.- +...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~-~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~sw----Rv~~ 198 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVE-KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSW----NVTH 198 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCC-CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEE----EEEC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcc-cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEE----EEcc
Confidence 46677777651 33333333221222 24568888888 22 113433 3334788999999987642 2221
Q ss_pred cccCCC--Ccccccc----ccccEEEEEEeec----CCEEEEEeCCeEEEEEccC----CCCCeeeeecccccccccccc
Q 010287 326 EQEAPG--TRSFFTE----IIASISDIKFARN----GRHILSRDYMTLKLWDINM----DSGPVATFQVHEHLRPKLCDL 391 (513)
Q Consensus 326 ~~~~~~--~~~~~~~----~~~~v~~i~~sp~----~~~l~~~~~~~v~iwd~~~----~~~~~~~~~~~~~~~~~~~~~ 391 (513)
..-.+. ......+ -...+..|+++|+ ++.|.-..-..-++|.+.+ .......+ ..+
T Consensus 199 ~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v----------~~~ 268 (381)
T 3q6k_A 199 PTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNP----------ELL 268 (381)
T ss_dssp GGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCC----------EEE
T ss_pred CCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhce----------EEe
Confidence 111111 0000111 1247899999998 7777765543334555432 01110111 000
Q ss_pred cccCCccceeeEEEe-CCCCEEEEEeCCCcEEEEecCC
Q 010287 392 YENDSIFDKFECCLS-GDGGRVATGSYSNLFRVFGCSE 428 (513)
Q Consensus 392 ~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~vwd~~~ 428 (513)
.......+-..+++. .+|.++++--..+.|..|+..+
T Consensus 269 G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 269 GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 000000111245665 5676677777888999999875
No 330
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=88.89 E-value=11 Score=32.75 Aligned_cols=22 Identities=5% Similarity=0.209 Sum_probs=16.2
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCC
Q 010287 408 DGGRVATGSYS-----NLFRVFGCSEG 429 (513)
Q Consensus 408 ~~~~l~~~~~d-----g~i~vwd~~~~ 429 (513)
++++++.|+.+ ..+.+||+.+.
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 66777777754 46889999866
No 331
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=87.56 E-value=14 Score=32.21 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=15.7
Q ss_pred CCCEEEEEeCCC-----cEEEEecCCC
Q 010287 408 DGGRVATGSYSN-----LFRVFGCSEG 429 (513)
Q Consensus 408 ~~~~l~~~~~dg-----~i~vwd~~~~ 429 (513)
++++++.|+.++ .+.+||+.+.
T Consensus 251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 251 NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 667777777553 4788888765
No 332
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=86.99 E-value=15 Score=32.04 Aligned_cols=22 Identities=0% Similarity=-0.020 Sum_probs=15.9
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCC
Q 010287 408 DGGRVATGSYS-----NLFRVFGCSEG 429 (513)
Q Consensus 408 ~~~~l~~~~~d-----g~i~vwd~~~~ 429 (513)
++++++.|+.+ ..+.+||+.+.
T Consensus 247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 247 GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 66777788754 46788888765
No 333
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=85.92 E-value=11 Score=35.90 Aligned_cols=79 Identities=16% Similarity=0.157 Sum_probs=54.8
Q ss_pred CCeEEEEeccCCCEEEEE--cCCeEEEEEcCCCcceee--ecccCc---cccccccCCeEEEEEeCCCCeEEEEEeCCCc
Q 010287 233 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFN--IVDVKP---ANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 305 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~--~d~~i~vwd~~~~~~~~~--~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 305 (513)
.....+.++|||++++.+ -+.++.++|++.-...+. +++.+. ...+ -.......+|.++| +...+...|..
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecce
Confidence 345678899999999987 499999999984322110 000000 0111 24557889999998 88888889999
Q ss_pred EEEEEcCC
Q 010287 306 IRLIDMRQ 313 (513)
Q Consensus 306 i~vwd~~~ 313 (513)
|..|++..
T Consensus 401 vvkWni~~ 408 (638)
T 3sbq_A 401 VVKWNMEE 408 (638)
T ss_dssp EEEEEHHH
T ss_pred EEEEeccH
Confidence 99999865
No 334
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=85.92 E-value=32 Score=34.80 Aligned_cols=251 Identities=7% Similarity=-0.025 Sum_probs=123.4
Q ss_pred CCeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcC
Q 010287 233 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 312 (513)
Q Consensus 233 ~~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 312 (513)
..|.++....++.+-+....| +.++... . ..+.+......-......|.++.-..++ .+.+ |+.+| +..++..
T Consensus 279 ~~i~~i~~D~~g~lWiGT~~G-l~~~~~~-~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g-~lWi-Gt~~G-l~~~~~~ 351 (758)
T 3ott_A 279 NIIWNIFADQEHNIWLGTDYG-ISLSRYN-S--ALQFIPISQITGTGDGNQFYSLFRDSKG-FYWF-GGANG-LIRFTDP 351 (758)
T ss_dssp SCEEEEEECTTCCEEEEESSS-EEEECCC-C---CEEEEHHHHSCSCCCCBEEEEEECTTC-CEEE-EETTE-EEEESCT
T ss_pred CeEEEEEEcCCCCEEEEeCCc-ccccccC-C--ceeEEecccCCCCCCCceEEEEEEcCCC-CEEE-eeCCc-ceeeccc
Confidence 347888888888766655556 5444322 1 1111100000001123468888888887 5444 34555 5556655
Q ss_pred CcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeeccccccccccccc
Q 010287 313 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLY 392 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (513)
++... ....+........ + ....|.++.-.++|.+.+.. ++-|..||..+ + ....+...... .. .
T Consensus 352 ~~~~~--~~~~~~~~~~~~~---l--~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~-~-~~~~~~~~~~~-~~----~ 416 (758)
T 3ott_A 352 AGERH--DAIWYRMGDKTYP---L--SHNRIRHIYEDKEQQLWIAT-DGSINRYDYAT-R-QFIHYNIVDNT-GT----Y 416 (758)
T ss_dssp TSSCC--CCEEECTTCSSSC---C--SCSCEEEEEECTTSCEEEEE-TTEEEEEETTT-T-EEEEEEEECCC-------C
T ss_pred ccccc--eeEEeccCCcCCC---C--CCCceEEEEECCCCCEEEEe-CCcHhhcCcCC-C-cEEEeecCCCc-CC----C
Confidence 43211 0111211000000 0 11458888887788766544 56788899774 3 23333211110 00 0
Q ss_pred ccCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCC-----Cccc--eeec----CCCCceeEEEEcCCCCcee-eecC
Q 010287 393 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG-----SAES--TTLE----ASKNPMRRQVQTPSRPSRP-LGSL 460 (513)
Q Consensus 393 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-----~~~~--~~~~----~~~~~v~~~~~~~~~~~l~-~~~~ 460 (513)
.. ..|.++...++++ |..|+..+-|.++|..+. .... ..+. .....|.++...+++.+.+ .+..
T Consensus 417 ~~---~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~ 492 (758)
T 3ott_A 417 NT---NWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNN 492 (758)
T ss_dssp BS---SSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTC
T ss_pred CC---ceEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCC
Confidence 00 1134666666665 445666556888886531 0010 0111 1223588888888888665 3556
Q ss_pred CCeEEEe-cCCCCCccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287 461 SGVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 461 d~~i~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 512 (513)
+|..++- ....... ...........+.++....+|.+.+. +.+++..|+
T Consensus 493 ~Gl~~~d~~~~~~~~--~~~~~~~~~~~~~~i~~d~~g~lWig-t~~Gl~~~~ 542 (758)
T 3ott_A 493 KGIDKINPRTREVTK--LFADELTGEKSPNYLLCDEDGLLWVG-FHGGVMRIN 542 (758)
T ss_dssp SSEEEEETTTTEEEE--ECTTTSCGGGCEEEEEECTTSCEEEE-ETTEEEEEC
T ss_pred CCcEEEeCCCCceEE--ecCCCcCCCcccceEEECCCCCEEEE-ecCceEEEe
Confidence 7766661 1111110 00001111346788888888877654 457888774
No 335
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=85.38 E-value=18 Score=31.49 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=16.5
Q ss_pred CCCeEEEEEeCC------CcEEEEEcCCcc
Q 010287 292 THCNMLAYSSSK------GSIRLIDMRQSA 315 (513)
Q Consensus 292 ~~~~~l~~~~~d------g~i~vwd~~~~~ 315 (513)
++ .+++.|+.+ ..+.+||+.+..
T Consensus 101 ~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 101 EG-KIYTSGGSEVGNSALYLFECYDTRTES 129 (306)
T ss_dssp TT-EEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred CC-EEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence 44 788888765 468888987754
No 336
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=84.99 E-value=35 Score=34.48 Aligned_cols=242 Identities=11% Similarity=0.065 Sum_probs=120.3
Q ss_pred CeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC
Q 010287 234 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 313 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 313 (513)
.|.++....++.+.+...+ -|..++..+... ..+.. +.........|.++...+++ ..|-.|+. +-+..+|..+
T Consensus 147 ~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~--~~~~~-~~~~~~~~~~i~~i~~d~~~-~~lWigt~-~Gl~~~~~~~ 220 (758)
T 3ott_A 147 TIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKF--EGIPL-PVHSSQSNLFVNSLLEDTTR-QCVWIGTE-GYLFQYFPST 220 (758)
T ss_dssp CEEEEEECTTCCEEEEETT-EEEEEETTTTEE--EEECC-CCCTTCSSCCEEEEEEETTT-TEEEEEEE-EEEEEEETTT
T ss_pred eEEEEEEcCCCCEEEEeCC-CHhhCccCCCce--EEecC-CCccccccceeEEEEEECCC-CEEEEEEC-CCCeEEcCCC
Confidence 3777877777877665444 477788764332 11100 00000112348888888765 43333443 4577788766
Q ss_pred cccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccc
Q 010287 314 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE 393 (513)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (513)
+... .+.. + ....|.++...++|.+.+.. ++-+.+++... . .+..+........ .+.
T Consensus 221 ~~~~-----~~~~---------l--~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~-~-~~~~~~~~~~~~~---~l~- 277 (758)
T 3ott_A 221 GQIK-----QTEA---------F--HNNSIKSLALDGNGDLLAGT-DNGLYVYHNDT-T-PLQHIIHDSRNIQ---SLT- 277 (758)
T ss_dssp TEEE-----EEEE---------E--EEEEEEEEEECTTCCEEEEE-TTEEEEECCTT-S-CCEEECCCTTCTT---SCS-
T ss_pred CeEE-----eccC---------C--CCCeEEEEEEcCCCCEEEEe-CCceeEEecCC-C-cEEEEEcCCCCcC---cCC-
Confidence 5421 1110 0 01358888887777766654 55577888763 2 2333321111000 000
Q ss_pred cCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceee-----cCCCCceeEEEEcCCCCceeeecCCCeEEEec
Q 010287 394 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL-----EASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK 468 (513)
Q Consensus 394 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~ 468 (513)
.. .|.++....+|.+.+ |+..| +.++..... ...... ......|.++....+|.+.+.. .+|..++..
T Consensus 278 ~~---~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt-~~Gl~~~~~ 350 (758)
T 3ott_A 278 NN---IIWNIFADQEHNIWL-GTDYG-ISLSRYNSA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWFGG-ANGLIRFTD 350 (758)
T ss_dssp CS---CEEEEEECTTCCEEE-EESSS-EEEECCCC--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEE-TTEEEEESC
T ss_pred cC---eEEEEEEcCCCCEEE-EeCCc-ccccccCCc-eeEEecccCCCCCCCceEEEEEEcCCCCEEEee-CCcceeecc
Confidence 01 245777777776544 55556 555433211 111111 1123467788887777755443 467666611
Q ss_pred CC-CCCccc-cC--Cc-cccccCCeeEEEEeCCCCEEEEEcCCcEEEEe
Q 010287 469 GA-DNSALD-AN--GN-AFDFSMKLLHLAWHPSENSIACAASNSLYMYY 512 (513)
Q Consensus 469 ~~-~~~~~~-~~--~~-~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 512 (513)
.. ...... .. .. ..-....|.++.-..++++.+. +.+++..|+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWig-t~~GL~~~~ 398 (758)
T 3ott_A 351 PAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIA-TDGSINRYD 398 (758)
T ss_dssp TTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEE-ETTEEEEEE
T ss_pred cccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEE-eCCcHhhcC
Confidence 11 000000 00 00 0001346888888888876553 467888775
No 337
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=84.43 E-value=22 Score=31.68 Aligned_cols=25 Identities=8% Similarity=-0.096 Sum_probs=18.3
Q ss_pred CEEEEE-cCCeEEEEEcCCCcceeee
Q 010287 245 ETFISA-DDLRINLWNLEISNQSFNI 269 (513)
Q Consensus 245 ~~l~s~-~d~~i~vwd~~~~~~~~~~ 269 (513)
..+++| .++.+.-.|+++++...+.
T Consensus 112 g~Vy~Gs~~g~l~ald~~tG~~~W~~ 137 (339)
T 2be1_A 112 EKVYTGSMRTIMYTINMLNGEIISAF 137 (339)
T ss_dssp EEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred CEEEEEecCCEEEEEECCCCcEEEEE
Confidence 345555 7899999999888876653
No 338
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=84.17 E-value=28 Score=32.68 Aligned_cols=119 Identities=13% Similarity=0.084 Sum_probs=61.7
Q ss_pred CCeEEEEeccCCC--EEEEEcCCeEEEEEcCCCcceeeecccCccccc----cccCCeEEEEEeCC----CCeEEEEEeC
Q 010287 233 YHINSISNNSDGE--TFISADDLRINLWNLEISNQSFNIVDVKPANME----DLTEVITSAEFHPT----HCNMLAYSSS 302 (513)
Q Consensus 233 ~~v~~~~~~~~~~--~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~----~~~~l~~~~~ 302 (513)
...+.|+|.|++. +|++-..|.|++++.........+.++...... ........|+++|+ + .++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~-~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG-KLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC-EEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC-EEEEEEeC
Confidence 3467999999985 666667899999975422111111111111111 12456789999996 4 44444332
Q ss_pred C------------CcEEEEEcCCcc--cc--cccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeC
Q 010287 303 K------------GSIRLIDMRQSA--LC--DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 360 (513)
Q Consensus 303 d------------g~i~vwd~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~ 360 (513)
+ ..|.-|.+..+. .. ......++.... ...| .-..|.|.|||.+.++..+
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~------~~~H--~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAEL------HRKH--LGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEES------SSSS--CEEEEEECTTSCEEEEECC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCC------CCcc--cCCcEeECCCCcEEEEeCC
Confidence 1 134445554321 10 011112221110 1123 3578999999987777444
No 339
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=82.26 E-value=24 Score=30.56 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=16.2
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCC
Q 010287 408 DGGRVATGSYS-----NLFRVFGCSEG 429 (513)
Q Consensus 408 ~~~~l~~~~~d-----g~i~vwd~~~~ 429 (513)
++++++.|+.+ ..+.+||+.+.
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCC
Confidence 66777777754 36889998865
No 340
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=82.09 E-value=25 Score=30.70 Aligned_cols=22 Identities=14% Similarity=0.359 Sum_probs=15.9
Q ss_pred CCCEEEEEeCCC-----cEEEEecCCC
Q 010287 408 DGGRVATGSYSN-----LFRVFGCSEG 429 (513)
Q Consensus 408 ~~~~l~~~~~dg-----~i~vwd~~~~ 429 (513)
++++++.|+.++ .+.+||+.+.
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred CCEEEEEeccCCCCccceEEEEECCCC
Confidence 667777777544 4788898865
No 341
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=81.55 E-value=26 Score=30.49 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=16.3
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCC
Q 010287 408 DGGRVATGSYS-----NLFRVFGCSEG 429 (513)
Q Consensus 408 ~~~~l~~~~~d-----g~i~vwd~~~~ 429 (513)
++++++.|+.+ ..+.+||+.+.
T Consensus 215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 215 HNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 66777777754 56889998865
No 342
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=79.56 E-value=18 Score=35.83 Aligned_cols=38 Identities=13% Similarity=0.308 Sum_probs=30.8
Q ss_pred ccceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeecc
Q 010287 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (513)
Q Consensus 113 ~~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~ 154 (513)
..|.++.+ +..++++-+.|+++|+|++.++++.....+
T Consensus 222 ~~Is~~~~----~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF----HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE----TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc----CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34666655 356999999999999999999998877766
No 343
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=76.99 E-value=40 Score=30.01 Aligned_cols=28 Identities=7% Similarity=0.042 Sum_probs=16.5
Q ss_pred EeCCCCEEEEEeCCC------cEEEEecCCCCcc
Q 010287 405 LSGDGGRVATGSYSN------LFRVFGCSEGSAE 432 (513)
Q Consensus 405 ~s~~~~~l~~~~~dg------~i~vwd~~~~~~~ 432 (513)
...++++++.|+.++ .|.++++++++..
T Consensus 313 ~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 313 LPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp EEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence 334777888887543 3555677766443
No 344
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=74.61 E-value=27 Score=31.07 Aligned_cols=107 Identities=11% Similarity=0.176 Sum_probs=58.2
Q ss_pred eEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEE--e-ecCCEEEEE--eCCeEEEEEcc
Q 010287 295 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF--A-RNGRHILSR--DYMTLKLWDIN 369 (513)
Q Consensus 295 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--s-p~~~~l~~~--~~~~v~iwd~~ 369 (513)
.+++.++.||.|.-+|..+|+..++ ++... . .++....- . .++..++.. .+|.|..++..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~----~~~~~-~----------~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~ 75 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWS----IEPEN-F----------QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAH 75 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEE----ECGGG-S----------CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEE----ecCCc-c----------CCcEEecCCccccCCcEEEEEECCCCEEEEEECC
Confidence 5788899999999999999887543 22110 0 00110000 0 123333332 35888888876
Q ss_pred CCCCCeeeeecccccccccccccccCCccceeeEEEe-----------CCCCEEEEEeCCCcEEEEecCCCCc
Q 010287 370 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS-----------GDGGRVATGSYSNLFRVFGCSEGSA 431 (513)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----------~~~~~l~~~~~dg~i~vwd~~~~~~ 431 (513)
. +.....+...... . ...+... ..+..+++|+.+|.+...|+.+|+.
T Consensus 76 ~-G~~~~~~~~~~lv-~-------------~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~ 133 (339)
T 2be1_A 76 Q-GLQKLPLSIRQLV-S-------------TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI 133 (339)
T ss_dssp T-EEEEEEEEHHHHH-T-------------TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred C-CcEEeeeccccce-e-------------ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE
Confidence 4 4322222211100 0 0011211 1455788999999999999999843
No 345
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=73.18 E-value=46 Score=28.88 Aligned_cols=23 Identities=9% Similarity=-0.022 Sum_probs=16.1
Q ss_pred CCCeEEEEEeCC-----CcEEEEEcCCcc
Q 010287 292 THCNMLAYSSSK-----GSIRLIDMRQSA 315 (513)
Q Consensus 292 ~~~~~l~~~~~d-----g~i~vwd~~~~~ 315 (513)
++ .+++.|+.+ ..+.+||+.+..
T Consensus 168 ~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 195 (308)
T 1zgk_A 168 NR-LLYAVGGFDGTNRLNSAECYYPERNE 195 (308)
T ss_dssp TT-EEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred CC-EEEEEeCCCCCCcCceEEEEeCCCCe
Confidence 44 788887765 458888887654
No 346
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=61.31 E-value=88 Score=27.70 Aligned_cols=12 Identities=8% Similarity=-0.061 Sum_probs=8.8
Q ss_pred CcEEEEEcCCcc
Q 010287 304 GSIRLIDMRQSA 315 (513)
Q Consensus 304 g~i~vwd~~~~~ 315 (513)
..+.+||+.+..
T Consensus 168 ~~v~~yd~~~~~ 179 (357)
T 2uvk_A 168 KFLLSFDPSTQQ 179 (357)
T ss_dssp CEEEEEETTTTE
T ss_pred ccEEEEeCCCCc
Confidence 468888987654
No 347
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=59.01 E-value=71 Score=33.29 Aligned_cols=39 Identities=8% Similarity=0.192 Sum_probs=30.5
Q ss_pred cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeecc
Q 010287 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (513)
Q Consensus 114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~ 154 (513)
.+.+++. ..+..++++-+.|+++|+|++.++++.....+
T Consensus 237 ~~~~~~~--~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIF--LSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEE--ETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEee--cCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 4555555 34667889999999999999999998776554
No 348
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=58.62 E-value=1.2e+02 Score=28.38 Aligned_cols=28 Identities=7% Similarity=0.007 Sum_probs=21.7
Q ss_pred cEEEEEEeecCC--EEEEEeCCeEEEEEcc
Q 010287 342 SISDIKFARNGR--HILSRDYMTLKLWDIN 369 (513)
Q Consensus 342 ~v~~i~~sp~~~--~l~~~~~~~v~iwd~~ 369 (513)
..+.|+|.|+|. ++++-..|.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 467899999985 6666556999999753
No 349
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=57.18 E-value=1.6e+02 Score=29.34 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=17.4
Q ss_pred CCCeEEEEEeCCC--cEEEEEcCCcc
Q 010287 292 THCNMLAYSSSKG--SIRLIDMRQSA 315 (513)
Q Consensus 292 ~~~~~l~~~~~dg--~i~vwd~~~~~ 315 (513)
++ .+++.|+.++ .+.+||+.+..
T Consensus 500 ~~-~iyv~GG~~~~~~v~~yd~~t~~ 524 (695)
T 2zwa_A 500 DG-NVLILGGVTEGPAMLLYNVTEEI 524 (695)
T ss_dssp TS-CEEEECCBCSSCSEEEEETTTTE
T ss_pred CC-EEEEECCCCCCCCEEEEECCCCc
Confidence 55 7888888755 68899987754
No 350
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=55.36 E-value=65 Score=33.58 Aligned_cols=32 Identities=9% Similarity=0.000 Sum_probs=27.5
Q ss_pred eeeEEEeCCCCEEEEEeCCCcEEEEecCCCCc
Q 010287 400 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 431 (513)
Q Consensus 400 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 431 (513)
+.+++..++..++++-+.|+++|+|++.+++.
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~ 269 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC 269 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTTTEE
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCCCCe
Confidence 45677888889999999999999999998843
No 351
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=51.60 E-value=1.2e+02 Score=26.26 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=14.8
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCC
Q 010287 408 DGGRVATGSYS-----NLFRVFGCSEG 429 (513)
Q Consensus 408 ~~~~l~~~~~d-----g~i~vwd~~~~ 429 (513)
++++++.|+.+ ..+.+||+.+.
T Consensus 206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 206 KGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred CCEEEEEcCcCCCCccceEEEEECCCC
Confidence 66777777643 34678888765
No 352
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=50.73 E-value=2e+02 Score=28.67 Aligned_cols=192 Identities=9% Similarity=-0.009 Sum_probs=95.0
Q ss_pred EEEE-eccCCCEEEEE-c-----CCeEEEEEcCCCcceeeecccCccccc-cccC------CeEEEEEeCCCCeEEEEEe
Q 010287 236 NSIS-NNSDGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANME-DLTE------VITSAEFHPTHCNMLAYSS 301 (513)
Q Consensus 236 ~~~~-~~~~~~~l~s~-~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~------~i~~~~~~~~~~~~l~~~~ 301 (513)
..+. ++|++++++.+ + -..++++|+.+++..-. .+. .-.. ....++|..++ .++++..
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-------~~~~~~k~~~~~~~~~~~~~W~d~~-~~~~~~~ 203 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-------GFEPITNSGKLLEGKFTYPTWINKD-TIIFNLV 203 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-------CSCCBCTTCCBCCEETCCEEEEETT-EEEECCC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-------CcccccccccccccccceeeEECCC-EEEEEeC
Confidence 3444 88999988865 2 34699999997664322 111 0000 11344777444 5555321
Q ss_pred ----------CCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCE-----EEEEe-C---Ce
Q 010287 302 ----------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH-----ILSRD-Y---MT 362 (513)
Q Consensus 302 ----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-----l~~~~-~---~~ 362 (513)
....|+.|.+-+... .....++.... ....+...++++++ +++.. + ..
T Consensus 204 ~~~~~~~~~~~~~~v~~~~~Gt~~~--~~~~v~~~~~~-----------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 270 (711)
T 4hvt_A 204 LHKNEITSSLYPNSLYIWKRGESIE--KAKKLFEVPKE-----------YIYVSAGKLLSDTISSSLIFISANKDFYNYD 270 (711)
T ss_dssp CSTTCBCTTSSBCEEEEEETTSCGG--GCEEEEECCTT-----------SCEEEEEESSCTTTCSSEEEEEEESSSSCEE
T ss_pred CCCCCcCcCCCCCEEEEEECCCChH--HCeEEeccCCC-----------ceEEEEEEecCCCceEEEEEEEEecccCcee
Confidence 124577776655432 22334444321 11233445566652 34332 3 45
Q ss_pred EEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCCCCEEEEE----------eCCCcEEEEecCCCC--
Q 010287 363 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG----------SYSNLFRVFGCSEGS-- 430 (513)
Q Consensus 363 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----------~~dg~i~vwd~~~~~-- 430 (513)
+.+.+...+...+..+...... .+..+.++.+++.. ...+.|...++.+..
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 333 (711)
T 4hvt_A 271 NYILDTKYKNLKLQKINMPSDA-----------------TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKT 333 (711)
T ss_dssp EEEEECSSSSCEEEECCSCTTC-----------------EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSC
T ss_pred EEEEcCCCCCCcceEeecCCcc-----------------eEeeeECCEEEEEECcccccccccCCCCeEEEEECCccccc
Confidence 5555654212222333222211 22334455554422 246778888887641
Q ss_pred ----cccee-ec-CCCCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 431 ----AESTT-LE-ASKNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 431 ----~~~~~-~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
..... +. .....+..+.+..+ .++++...++.-++
T Consensus 334 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l 374 (711)
T 4hvt_A 334 ESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKV 374 (711)
T ss_dssp GGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEE
T ss_pred ccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEE
Confidence 11122 32 23345667777765 56667777777665
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=50.33 E-value=1.5e+02 Score=26.89 Aligned_cols=74 Identities=8% Similarity=0.065 Sum_probs=42.0
Q ss_pred CCeEEEEeccC----CCEEEEE--cCCeEEEEE---cCCCcceeeecccCcccccccc---CCeEEEEEe-CCCCeEEEE
Q 010287 233 YHINSISNNSD----GETFISA--DDLRINLWN---LEISNQSFNIVDVKPANMEDLT---EVITSAEFH-PTHCNMLAY 299 (513)
Q Consensus 233 ~~v~~~~~~~~----~~~l~s~--~d~~i~vwd---~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~-~~~~~~l~~ 299 (513)
..+..|+.+|+ ++.|.-. ....++--. ++.......+ ...+.. ..-..+++. .+| .++++
T Consensus 220 ~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v------~~~G~kg~~s~~~~~~~D~~~G-~ly~~ 292 (381)
T 3q6k_A 220 AGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNP------ELLGNRGKYNDAIALAYDPKTK-VIFFA 292 (381)
T ss_dssp CCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCC------EEEEECCTTCCEEEEEECTTTC-EEEEE
T ss_pred cCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhce------EEeeecCCCCCcceEEEeCCCC-eEEEE
Confidence 45889999997 6777765 333333332 1111110000 111112 223455675 566 88888
Q ss_pred EeCCCcEEEEEcCC
Q 010287 300 SSSKGSIRLIDMRQ 313 (513)
Q Consensus 300 ~~~dg~i~vwd~~~ 313 (513)
--....|..|+..+
T Consensus 293 ~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 293 EANTKQVSCWNTQK 306 (381)
T ss_dssp ESSSSEEEEEETTS
T ss_pred eccCCeEEEEeCCC
Confidence 88899999999865
No 354
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=49.38 E-value=1.3e+02 Score=26.00 Aligned_cols=54 Identities=7% Similarity=-0.047 Sum_probs=27.9
Q ss_pred CCCCEEEEEeC-C-----CcEEEEecCCCCccc-eeecCCCCceeEEEEcCCCCceeeecCCC
Q 010287 407 GDGGRVATGSY-S-----NLFRVFGCSEGSAES-TTLEASKNPMRRQVQTPSRPSRPLGSLSG 462 (513)
Q Consensus 407 ~~~~~l~~~~~-d-----g~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 462 (513)
-++++++.|+. + ..+.+||+.+..-.. ..+.... ....+...+++.++.|+.++
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~ 207 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTAR--SLFGATVHDGRIIVAAGVTD 207 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCC--BSCEEEEETTEEEEEEEECS
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCch--hceEEEEECCEEEEEeccCC
Confidence 46667777775 2 468899988653221 1111111 11122223667777777654
No 355
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=44.87 E-value=49 Score=35.36 Aligned_cols=31 Identities=10% Similarity=0.023 Sum_probs=26.7
Q ss_pred eeEEEeCCCCEEEEEeCCCcEEEEecCCCCc
Q 010287 401 FECCLSGDGGRVATGSYSNLFRVFGCSEGSA 431 (513)
Q Consensus 401 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 431 (513)
.+++..++..++++-+.|+++|+|++.+++.
T Consensus 241 vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~ 271 (1139)
T 4fhn_B 241 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC 271 (1139)
T ss_dssp SCCEEETTTTEEEEEBTTCEEEEEETTTTEE
T ss_pred EEeeccCCccEEEEEeCCCEEEEEECCCCCe
Confidence 3667778889999999999999999998844
No 356
>2loj_A Putative cytoplasmic protein; pathogenic bacterial protein, PSI-biology, northeast structu genomics consortium (NESG); NMR {Salmonella enterica subsp}
Probab=44.40 E-value=43 Score=20.88 Aligned_cols=38 Identities=11% Similarity=0.033 Sum_probs=28.1
Q ss_pred cccccccceeccccccccccccccEEEEEEcCCCCEEEe
Q 010287 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLAT 52 (513)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat 52 (513)
...++..+.|+... ...+.|.+.++.+.....|++|++
T Consensus 25 ~~~i~S~~Ll~g~~-~v~I~H~G~~Y~LR~Tr~GKLILT 62 (63)
T 2loj_A 25 ERRVNSQALLGPDG-KVIIDHNGQEYLLRKTQAGKLLLT 62 (63)
T ss_dssp CCEEEGGGSSTTTC-EEEEEETTEEEEEEEETTTEEEEE
T ss_pred cceEcHHHHhCCCC-EEEEEeCCeEEEeEEccCCceeec
Confidence 34566666666433 356789999999999999998876
No 357
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=42.00 E-value=88 Score=31.09 Aligned_cols=25 Identities=0% Similarity=-0.116 Sum_probs=21.8
Q ss_pred eCCCCEEEEEeCCCcEEEEecCCCC
Q 010287 406 SGDGGRVATGSYSNLFRVFGCSEGS 430 (513)
Q Consensus 406 s~~~~~l~~~~~dg~i~vwd~~~~~ 430 (513)
..+..++++-+.|.++|+|+++++.
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~ 252 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFT 252 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTE
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCc
Confidence 3457799999999999999999984
No 358
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=36.77 E-value=86 Score=30.42 Aligned_cols=60 Identities=7% Similarity=0.157 Sum_probs=35.8
Q ss_pred CeEEEEEeCCCCeEEEEEeCC------------CcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEee
Q 010287 283 VITSAEFHPTHCNMLAYSSSK------------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 350 (513)
Q Consensus 283 ~i~~~~~~~~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp 350 (513)
..-.|+|+|.| .+++.-..+ ..+.+.+..++++ .+.+..+. ...++.++|+|
T Consensus 477 ~PDNL~fd~~G-~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~----~rf~~~P~-----------gaE~TG~~fsp 540 (592)
T 3zwu_A 477 SPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI----RRFMVGPI-----------GCEVTGISFSP 540 (592)
T ss_dssp CEEEEEECTTC-CEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCE----EEEEECCT-----------TCEEEEEEECT
T ss_pred CCcceEECCCC-CEEEEecCCCcccccccccccceEEEEeCCCCeE----EEEEeCCC-----------CccCcCeeECC
Confidence 35678999998 655543322 1244445444443 22222222 25799999999
Q ss_pred cCCEEEEE
Q 010287 351 NGRHILSR 358 (513)
Q Consensus 351 ~~~~l~~~ 358 (513)
|++.|+..
T Consensus 541 Dg~tlfvn 548 (592)
T 3zwu_A 541 DQKTLFVG 548 (592)
T ss_dssp TSSEEEEE
T ss_pred CCCEEEEE
Confidence 99887764
No 359
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=35.68 E-value=1.4e+02 Score=28.70 Aligned_cols=61 Identities=15% Similarity=0.017 Sum_probs=36.7
Q ss_pred ccEEEEEEeecCCEEEEEeC-------------CeEEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeC
Q 010287 341 ASISDIKFARNGRHILSRDY-------------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 407 (513)
Q Consensus 341 ~~v~~i~~sp~~~~l~~~~~-------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 407 (513)
.....|.|+++|.+.+..+. ..|..++... ++....+...... .++.++|+|
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t-Gel~~fl~~P~~a--------------EpnGiafSP 540 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVGPIGC--------------EVTGISFSP 540 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTT-CCEEEEEECCTTC--------------EEEEEEECT
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCC-CeEEEEEeCCCCc--------------cccCCEECC
Confidence 46788999999988774321 1445555443 4433333222211 135899999
Q ss_pred CCCEEEEEe
Q 010287 408 DGGRVATGS 416 (513)
Q Consensus 408 ~~~~l~~~~ 416 (513)
|++.|+++-
T Consensus 541 D~ktLfV~v 549 (592)
T 4a9v_A 541 DQKTLFVGI 549 (592)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEE
Confidence 999888664
No 360
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=34.49 E-value=35 Score=36.46 Aligned_cols=40 Identities=8% Similarity=0.199 Sum_probs=30.4
Q ss_pred cceeEEEeecCCCceEEEeecCCeEEEEEccCceeeeeeccc
Q 010287 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155 (513)
Q Consensus 114 ~i~~i~~~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~ 155 (513)
.+.+++.. .+..++++-+.|+++|+|++.++++.....+.
T Consensus 239 ~~vs~~~~--~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFL--STYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEE--TTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eeEEeecc--CCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 34455553 35578889999999999999999987765543
No 361
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=33.72 E-value=2.4e+02 Score=24.51 Aligned_cols=99 Identities=18% Similarity=0.115 Sum_probs=46.4
Q ss_pred CCCEEEEEeCCCcEEEEecCCCC------ccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCCc--cccCC
Q 010287 408 DGGRVATGSYSNLFRVFGCSEGS------AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSA--LDANG 479 (513)
Q Consensus 408 ~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--~~~~~ 479 (513)
++.+++..+.+|.++--.+.... .....++.. ..+-.+........++..+.+|.+......+... ..-.+
T Consensus 108 ~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~G 186 (307)
T 1zi0_A 108 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 186 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred CCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCC
Confidence 56688899999999988765321 111223333 3333333333344455555555543311111110 00000
Q ss_pred ---ccccccCCeeEEEEeCCCCEEEEEcCCc
Q 010287 480 ---NAFDFSMKLLHLAWHPSENSIACAASNS 507 (513)
Q Consensus 480 ---~~~~~~~~i~~~~~sp~~~~la~~~~~~ 507 (513)
-.+.-...|.++..-+++..|++.+.++
T Consensus 187 v~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G 217 (307)
T 1zi0_A 187 VRGIRLGEGDKVVSLIVPRGDGAILTATQNG 217 (307)
T ss_dssp EECCCCCTTCCEEEEECCCSSCEEEEEETTS
T ss_pred eEeEEeCCCCEEEEEEEecCCCEEEEEEcCC
Confidence 1112245566665555555566555444
No 362
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=33.63 E-value=2.2e+02 Score=24.21 Aligned_cols=218 Identities=8% Similarity=-0.004 Sum_probs=103.0
Q ss_pred CeEEEEeccCCCEEEEEcCCeEEEEEcCCCcceeeecccCccccccccCCeEEEEEeCCCCeEEEEEeCCCcEEEEEcCC
Q 010287 234 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 313 (513)
Q Consensus 234 ~v~~~~~~~~~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 313 (513)
.|..++.......++ . ||.|+.|-.....++-. |. .....|..++.... ..++. . ||.+..|-...
T Consensus 25 ~i~~ia~G~~h~~~l-~-~G~v~~wG~n~~Gqlg~-----p~---~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~ 90 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL-K-GGKVLGWGANLNGQLTM-----PA---ATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNE 90 (282)
T ss_dssp SCCEEEECSSEEEEE-E-TTEEEEEECCSSSTTSC-----CG---GGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCT
T ss_pred CCcEEEeCCCeEEEE-E-CCEEEEEeCCCCCCCCC-----Cc---cCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCC
Confidence 355666554332333 3 89999997665443321 10 11335777776654 34444 4 89999997544
Q ss_pred cccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEeCCeEEEEEccCCCCCeeeeecccccccccccccc
Q 010287 314 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE 393 (513)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (513)
......+.. ....|..|+...+...+++ +|.|+.|-....++.-......
T Consensus 91 ~Gqlg~P~~----------------~~~~v~~ia~G~~hs~al~--~G~v~~wG~n~~gqlg~~~~~~------------ 140 (282)
T 3qhy_B 91 DGQTTVPAE----------------ARSGVDAIAAGAWASYALK--DGKVIAWGDDSDGQTTVPAEAQ------------ 140 (282)
T ss_dssp TSTTCCCGG----------------GSSSEEEEEEETTEEEEEE--TTEEEEEECCTTSTTSCCGGGG------------
T ss_pred CCCCCCCcc----------------cCCCeEEEECcCCEEEEEe--CCeEEEecCCCCCcCCCCccCC------------
Confidence 222111000 0135777776644444444 8999999876433321100000
Q ss_pred cCCccceeeEEEeCCCCEEEEEeCCCcEEEEecCCCCccceeecCCCCceeEEEEcCCCCceeeecCCCeEEEecCCCCC
Q 010287 394 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNS 473 (513)
Q Consensus 394 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~ 473 (513)
..|..++-. ..+.+.-. ||.|+.|-.....++-.. ......+..++....... +. .||.+.. |...
T Consensus 141 ----~~i~~i~~G--~~~~~~l~-~G~v~~wG~n~~gqlg~p-~~~~~~v~~i~~G~~hs~-al--~~G~v~~---wG~n 206 (282)
T 3qhy_B 141 ----SGVTALDGG--VYTALAVK-NGGVIAWGDNYFGQTTVP-AEAQSGVDDVAGGIFHSL-AL--KDGKVIA---WGDN 206 (282)
T ss_dssp ----SSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSCC-GGGGSSEEEEEECSSEEE-EE--ETTEEEE---EECC
T ss_pred ----CCeEEEEcc--cCEEEEEE-CCEEEEecCCCCCCCCCc-eecCCCeEEEEecCCEEE-EE--ECCeEEE---EECC
Confidence 012233333 22333334 788999976543333111 111234555554433222 22 3676666 1111
Q ss_pred ccccCCccccccCCeeEEEEeCCCCEEEEEcCCcEEEE
Q 010287 474 ALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 511 (513)
Q Consensus 474 ~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~ 511 (513)
..-..+........|..++-..... +|.. ++.++.|
T Consensus 207 ~~gqlg~p~~~~~~v~~i~~G~~h~-~al~-~g~v~~w 242 (282)
T 3qhy_B 207 RYKQTTVPTEALSGVSAIASGEWYS-LALK-NGKVIAW 242 (282)
T ss_dssp TTSTTCCCGGGGSSCCEEEECSSCE-EEEE-TTEEEEE
T ss_pred CCCCCCCCcccCCCceEEEcCCCEE-EEEE-CCEEEEe
Confidence 0011111112234577777555443 4444 7777766
No 363
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=32.44 E-value=2.8e+02 Score=24.90 Aligned_cols=167 Identities=11% Similarity=0.045 Sum_probs=75.3
Q ss_pred ccEEEEEEee--cCCEEEEEeCC--eEEEEEccCCCCCeeeeeccccccccc-ccccccCCccceeeEEEeCC--CCEEE
Q 010287 341 ASISDIKFAR--NGRHILSRDYM--TLKLWDINMDSGPVATFQVHEHLRPKL-CDLYENDSIFDKFECCLSGD--GGRVA 413 (513)
Q Consensus 341 ~~v~~i~~sp--~~~~l~~~~~~--~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~--~~~l~ 413 (513)
..|.+|++.| .+.+.+.+..+ .-.||-....++....+.......... ...+ .....|.++++.|. ...|.
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~--~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETG--RVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----C--CCCCEEEEEEECCTTSTTCEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCccccccc--ccccceeEEEeCCCCCCCEEE
Confidence 4689999998 55555554444 112333332244333332110000000 0000 01112457888872 45566
Q ss_pred EEeCCCcEEEEecCCCCccceeec-------------------CCCCceeEEEEcCC-CCceeeecCCCeEEE-ecCCCC
Q 010287 414 TGSYSNLFRVFGCSEGSAESTTLE-------------------ASKNPMRRQVQTPS-RPSRPLGSLSGVVRR-VKGADN 472 (513)
Q Consensus 414 ~~~~dg~i~vwd~~~~~~~~~~~~-------------------~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~-~~~~~~ 472 (513)
.++..+.|...+ .+...-..+. .....+..+.+.|. ...+..+..++.+.. ..+.+.
T Consensus 133 ~g~~~ggl~~S~--DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~t 210 (394)
T 3b7f_A 133 AGTSPQGLFRST--DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTD 210 (394)
T ss_dssp EEEETTEEEEES--STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSS
T ss_pred EEecCCcEEEEc--CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCC
Confidence 666556554442 2222111111 11235778888874 344444444444444 333333
Q ss_pred CccccCCc---c-----ccccCCeeEEEEeCC-CCEEEEEcCCcEEEE
Q 010287 473 SALDANGN---A-----FDFSMKLLHLAWHPS-ENSIACAASNSLYMY 511 (513)
Q Consensus 473 ~~~~~~~~---~-----~~~~~~i~~~~~sp~-~~~la~~~~~~~~i~ 511 (513)
+....... . .+....+..++++|+ ...|.++..++++..
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s 258 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRM 258 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEE
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEe
Confidence 32111100 0 011245899999997 356666666766543
No 364
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=31.82 E-value=2.5e+02 Score=24.16 Aligned_cols=23 Identities=0% Similarity=0.106 Sum_probs=15.6
Q ss_pred CCCeEEEEEeC------CCcEEEEEcCCcc
Q 010287 292 THCNMLAYSSS------KGSIRLIDMRQSA 315 (513)
Q Consensus 292 ~~~~~l~~~~~------dg~i~vwd~~~~~ 315 (513)
++ .+++.|+. -..+.+||+.+..
T Consensus 158 ~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 158 NG-MIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp TT-EEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred CC-EEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 44 77777764 2358889987754
No 365
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=31.37 E-value=2.9e+02 Score=24.81 Aligned_cols=121 Identities=10% Similarity=0.005 Sum_probs=56.7
Q ss_pred CCCCeEEEEEeCCCcEEEEEcCCcccccc---cceeeccccCCCCccccccccccEEEEEEeecCCEEEEE-eCCeEEEE
Q 010287 291 PTHCNMLAYSSSKGSIRLIDMRQSALCDT---HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLW 366 (513)
Q Consensus 291 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~-~~~~v~iw 366 (513)
|+. .++++.+.+|.|+--.+..-....+ -...+...+ ...+..+........|+.. +.|.++-+
T Consensus 5 ~~e-~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-----------~D~l~~~~~~~t~d~ll~fT~~G~~~~~ 72 (370)
T 3l6v_A 5 APE-DVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-----------EDFIDQLWLVNTHDTLLTFTSSGKVFWL 72 (370)
T ss_dssp CCC-CEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-----------CCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred cCC-CEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-----------CCEEEEEEEecCCCEEEEEeCCCeEEEE
Confidence 565 6889999999999766543211100 011111111 1345555555555545544 44766655
Q ss_pred EccCCCCCeeeeecccccccccccccccCCccceeeE-EEe--CCCCEEEEEeCCCcEEEEecCC
Q 010287 367 DINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC-CLS--GDGGRVATGSYSNLFRVFGCSE 428 (513)
Q Consensus 367 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s--~~~~~l~~~~~dg~i~vwd~~~ 428 (513)
.... -+.............+..+...+.+. ++ .+. .++.+|+.++..|.++.-.+..
T Consensus 73 ~~~e--ip~~~r~a~G~~i~~ll~L~~~e~Iv---~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e 132 (370)
T 3l6v_A 73 PVHQ--LPEAGSNARGRPIINWIPLESGERVQ---AVLPVREYADNRYVFMATRNGTVKKTPLSE 132 (370)
T ss_dssp EGGG--SCBCCTTSCCEEGGGSCCCCTTCCEE---EEEEESCCCTTCEEEEEETTSEEEEEEGGG
T ss_pred EHHH--CcCCCcccCCcCHhhccCCCCCCEEE---EEEEeccCCCCcEEEEEeCCCeEEEeEHHH
Confidence 5431 00000000000000111112222222 22 222 2456899999999999887653
No 366
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=30.41 E-value=2.8e+02 Score=24.31 Aligned_cols=156 Identities=8% Similarity=0.057 Sum_probs=70.2
Q ss_pred CCCCeEEEEEeCCCcEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEE-EeCCeEEEEEcc
Q 010287 291 PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDYMTLKLWDIN 369 (513)
Q Consensus 291 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~-~~~~~v~iwd~~ 369 (513)
|+. ..+++.+.+|.|+--.+..-..... ..+. +.+. ..+..+........|+. .+.|.++-+...
T Consensus 3 ~~e-~~~v~lT~~G~IKr~~~~~~~~~~~--~~~~----------lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~ 68 (323)
T 1wp5_A 3 ASE-DVIVTVTKDGYVKRTSLRSYAASNG--QDFA----------MKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVH 68 (323)
T ss_dssp SCC-EEEEEEETTCEEEEEEHHHHHHTTT--CCCC----------CCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGG
T ss_pred cCC-cEEEEEeCCCEEEEeEHHHhhhcCc--cccc----------cCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHH
Confidence 455 6788899999999776543211000 0001 1111 23444444444444444 444776665543
Q ss_pred CCCCCeeeeecccccccccccccccCCccceeeE-EEeC--CCCEEEEEeCCCcEEEEecCCCC-------ccceeecCC
Q 010287 370 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC-CLSG--DGGRVATGSYSNLFRVFGCSEGS-------AESTTLEAS 439 (513)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~--~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~ 439 (513)
. -+.........+......+...+.+. .+ ...+ ++.+++..+.+|.++--.+.... .....++..
T Consensus 69 e--lp~~~r~a~G~~i~~~i~L~~~e~Iv---~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~ 143 (323)
T 1wp5_A 69 E--LPDIRWKDLGQHIANIIPIDRDEEII---KAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND 143 (323)
T ss_dssp G--SCBCCTTSCCEEGGGTSCCCTTCCEE---EEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT
T ss_pred H--CcCCCCCCCCcChhhccCCCCCCEEE---EEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC
Confidence 1 11100001010011111122222222 32 2322 35688899999999988775321 111223322
Q ss_pred CCceeEEEEcCCCCceeeecCCCeEEE
Q 010287 440 KNPMRRQVQTPSRPSRPLGSLSGVVRR 466 (513)
Q Consensus 440 ~~~v~~~~~~~~~~~l~~~~~d~~i~~ 466 (513)
..+-.+........++..+.+|.+..
T Consensus 144 -d~lv~~~~~~~~~~i~l~T~~G~~ir 169 (323)
T 1wp5_A 144 -DQVVDVHLTDGMNELFLVTHNGYALW 169 (323)
T ss_dssp -CCEEEEEEECSCSEEEEEETTSEEEE
T ss_pred -CEEEEEEEeCCCCEEEEEeCCCcEEE
Confidence 33333333333445555555665443
No 367
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=29.64 E-value=4.3e+02 Score=26.22 Aligned_cols=112 Identities=9% Similarity=0.052 Sum_probs=55.7
Q ss_pred CCCeEEEEEeCCC------cEEEEEcCCcccccccceeeccccCCCCccccccccccEEEEEEeecCCEEEEEe-C--Ce
Q 010287 292 THCNMLAYSSSKG------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y--MT 362 (513)
Q Consensus 292 ~~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~~~~-~--~~ 362 (513)
++ .+++.|+.++ .+.+||+.+..... +..+ +.+ . . -.+++.-.++.+++.|+ + +.
T Consensus 451 ~~-~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~--~~~~-----p~~---R----~-~h~~~~~~~~~iyv~GG~~~~~~ 514 (695)
T 2zwa_A 451 NN-QLLLIGGRKAPHQGLSDNWIFDMKTREWSM--IKSL-----SHT---R----F-RHSACSLPDGNVLILGGVTEGPA 514 (695)
T ss_dssp TT-EEEEECCBSSTTCBCCCCEEEETTTTEEEE--CCCC-----SBC---C----B-SCEEEECTTSCEEEECCBCSSCS
T ss_pred CC-EEEEEcCCCCCCCccccEEEEeCCCCcEEE--CCCC-----CCC---c----c-cceEEEEcCCEEEEECCCCCCCC
Confidence 55 7888887643 47788877643211 1110 100 0 1 11222223677777754 2 37
Q ss_pred EEEEEccCCCCCeeeeecccccccccccccccCCccceeeEEEeCC-CCEEEEEeC--C-----CcEEEEecCCCC
Q 010287 363 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSY--S-----NLFRVFGCSEGS 430 (513)
Q Consensus 363 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~--d-----g~i~vwd~~~~~ 430 (513)
+.+||..+ . ....+........ .. .....+.+..+ +++++.|+. + +.+.+||+.+..
T Consensus 515 v~~yd~~t-~-~W~~~~~~g~~p~--~r-------~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 515 MLLYNVTE-E-IFKDVTPKDEFFQ--NS-------LVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp EEEEETTT-T-EEEECCCSSGGGG--SC-------CBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred EEEEECCC-C-ceEEccCCCCCCC--cc-------cceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 88999875 2 2222221000000 00 00113555655 667777765 2 458899998774
No 368
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=29.10 E-value=1.5e+02 Score=28.68 Aligned_cols=56 Identities=9% Similarity=-0.024 Sum_probs=35.9
Q ss_pred eEEEeCCCCEEEEEeCC------------CcEEEEecCCCCccceeecC-CCCceeEEEEcCCCCceeee
Q 010287 402 ECCLSGDGGRVATGSYS------------NLFRVFGCSEGSAESTTLEA-SKNPMRRQVQTPSRPSRPLG 458 (513)
Q Consensus 402 ~~~~s~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 458 (513)
.|+|+|.|++++.-..+ +.+.+.+..++ ++...+.. ....+..++|+||++.|.+.
T Consensus 480 NL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g-~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG-EIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTC-CEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred ceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCC-eEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 58999999976654322 23555566655 33333333 34678899999998876543
No 369
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=25.17 E-value=3.7e+02 Score=24.02 Aligned_cols=99 Identities=13% Similarity=0.066 Sum_probs=47.8
Q ss_pred CEEEEEeCCCcEEEEecCCCCccceee--cCCCCceeEEEEcC--CCCceeeecCCC----eEEE-ecCCCCCccccCCc
Q 010287 410 GRVATGSYSNLFRVFGCSEGSAESTTL--EASKNPMRRQVQTP--SRPSRPLGSLSG----VVRR-VKGADNSALDANGN 480 (513)
Q Consensus 410 ~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~--~~~~l~~~~~d~----~i~~-~~~~~~~~~~~~~~ 480 (513)
..|..|+..| +.+++...+...-... ......+.++++.| .+.+.+.+ ..+ .|.. .++...+.......
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s~D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRSDDGGGNWTEATRPP 100 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEESSTTSCCEECSBCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEe-cCCCCCccEEEeCCCCCCceECCccc
Confidence 3677777777 5555543211111111 13345688999998 45555444 343 3433 33333332111000
Q ss_pred ccc---------ccCCeeEEEEeC---CCCEEEEEcCCcEEE
Q 010287 481 AFD---------FSMKLLHLAWHP---SENSIACAASNSLYM 510 (513)
Q Consensus 481 ~~~---------~~~~i~~~~~sp---~~~~la~~~~~~~~i 510 (513)
.+. ....|.++++.| .+.+.|.+..++++.
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~ 142 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFR 142 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEE
Confidence 000 123588899987 345555444555554
No 370
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=24.52 E-value=3.4e+02 Score=26.22 Aligned_cols=60 Identities=8% Similarity=-0.051 Sum_probs=38.1
Q ss_pred cceeeEEEeCCCCEEEEEeC------------CCcEEEEecCCCCccceeecCC-CCceeEEEEcCCCCceeee
Q 010287 398 FDKFECCLSGDGGRVATGSY------------SNLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSRPLG 458 (513)
Q Consensus 398 ~~v~~~~~s~~~~~l~~~~~------------dg~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~ 458 (513)
..--.+.|.++|.+.+.... .+.+..++..++ ++...+... ...++.++|+||++.|.++
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tG-el~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG-EIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTC-CEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCC-eEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 33447999999987773221 125666676655 333334333 4567899999998877554
Done!