Query 010290
Match_columns 513
No_of_seqs 239 out of 1922
Neff 11.1
Searched_HMMs 46136
Date Thu Mar 28 22:47:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0211 Protein phosphatase 2A 100.0 3.8E-41 8.2E-46 330.4 36.2 490 5-494 78-576 (759)
2 KOG0211 Protein phosphatase 2A 100.0 1.9E-32 4.1E-37 269.4 34.2 475 18-492 168-652 (759)
3 KOG2171 Karyopherin (importin) 100.0 4.4E-30 9.5E-35 254.4 47.1 495 9-511 4-606 (1075)
4 KOG2171 Karyopherin (importin) 100.0 5E-27 1.1E-31 232.9 44.3 470 14-484 84-615 (1075)
5 KOG2023 Nuclear transport rece 100.0 5.5E-27 1.2E-31 218.1 32.9 379 7-389 11-507 (885)
6 KOG1241 Karyopherin (importin) 100.0 8.5E-26 1.8E-30 213.7 33.9 489 14-510 61-722 (859)
7 KOG2023 Nuclear transport rece 99.9 7.5E-24 1.6E-28 197.5 29.2 443 43-495 9-535 (885)
8 KOG0213 Splicing factor 3b, su 99.9 2.6E-21 5.6E-26 182.6 36.9 454 11-471 365-960 (1172)
9 KOG0213 Splicing factor 3b, su 99.9 3.1E-20 6.8E-25 175.4 39.5 482 16-504 483-1066(1172)
10 COG5181 HSH155 U2 snRNP splice 99.9 2.5E-20 5.5E-25 172.7 30.5 479 11-503 170-870 (975)
11 COG5215 KAP95 Karyopherin (imp 99.9 2.5E-18 5.5E-23 158.3 39.2 495 15-510 100-722 (858)
12 KOG1241 Karyopherin (importin) 99.9 3.7E-18 8.1E-23 162.4 39.4 473 11-484 174-732 (859)
13 PF01602 Adaptin_N: Adaptin N 99.9 9.6E-19 2.1E-23 176.5 34.7 462 9-492 42-512 (526)
14 PLN03200 cellulose synthase-in 99.9 5.7E-18 1.2E-22 182.1 41.3 485 10-502 190-763 (2102)
15 PF01602 Adaptin_N: Adaptin N 99.9 3.1E-18 6.7E-23 172.8 37.3 464 15-502 10-482 (526)
16 PLN03200 cellulose synthase-in 99.9 4.7E-18 1E-22 182.7 39.9 468 11-489 276-794 (2102)
17 KOG1240 Protein kinase contain 99.9 1.1E-19 2.5E-24 180.3 22.8 452 1-486 259-746 (1431)
18 PRK09687 putative lyase; Provi 99.9 2E-19 4.4E-24 161.6 22.7 253 165-462 25-279 (280)
19 COG5181 HSH155 U2 snRNP splice 99.8 1.5E-17 3.2E-22 154.6 33.9 313 160-480 601-927 (975)
20 KOG1242 Protein containing ada 99.8 2.3E-17 5E-22 155.2 34.4 432 50-486 19-464 (569)
21 PRK09687 putative lyase; Provi 99.8 3.6E-19 7.8E-24 160.0 21.6 252 204-500 25-279 (280)
22 KOG1242 Protein containing ada 99.8 8.2E-18 1.8E-22 158.2 30.2 431 50-487 98-547 (569)
23 PRK13800 putative oxidoreducta 99.8 1.5E-18 3.2E-23 182.4 27.8 273 164-499 622-895 (897)
24 KOG0212 Uncharacterized conser 99.8 1.8E-17 3.9E-22 152.6 30.7 374 95-469 9-410 (675)
25 PRK13800 putative oxidoreducta 99.8 1.7E-18 3.8E-23 181.9 26.5 275 126-462 622-896 (897)
26 KOG1824 TATA-binding protein-i 99.8 3.6E-16 7.9E-21 152.1 39.2 460 24-487 148-705 (1233)
27 COG5215 KAP95 Karyopherin (imp 99.8 8.6E-16 1.9E-20 141.9 38.9 464 44-508 90-677 (858)
28 KOG1824 TATA-binding protein-i 99.8 9.5E-16 2E-20 149.2 39.6 485 13-503 9-638 (1233)
29 KOG0212 Uncharacterized conser 99.8 4.1E-16 8.9E-21 143.8 33.2 414 56-471 9-450 (675)
30 PTZ00429 beta-adaptin; Provisi 99.8 1.1E-14 2.3E-19 146.5 44.7 434 11-468 34-510 (746)
31 KOG0915 Uncharacterized conser 99.8 9.9E-16 2.1E-20 156.1 32.4 430 56-486 827-1327(1702)
32 PTZ00429 beta-adaptin; Provisi 99.8 1.7E-13 3.6E-18 138.0 44.0 428 11-465 70-546 (746)
33 KOG0915 Uncharacterized conser 99.7 1.6E-13 3.5E-18 140.4 37.5 483 14-503 823-1427(1702)
34 KOG1240 Protein kinase contain 99.7 2.4E-16 5.3E-21 157.0 16.8 300 60-368 436-745 (1431)
35 KOG0166 Karyopherin (importin) 99.7 2.6E-14 5.7E-19 134.1 27.0 344 160-503 106-486 (514)
36 KOG0166 Karyopherin (importin) 99.7 2.5E-14 5.5E-19 134.2 26.5 335 11-347 68-435 (514)
37 KOG1060 Vesicle coat complex A 99.7 1.7E-12 3.6E-17 124.8 35.7 383 12-426 38-458 (968)
38 KOG4224 Armadillo repeat prote 99.6 9.6E-14 2.1E-18 121.8 19.3 376 50-427 88-494 (550)
39 KOG1943 Beta-tubulin folding c 99.5 1.6E-10 3.5E-15 115.4 37.0 452 11-466 343-882 (1133)
40 PF10508 Proteasom_PSMB: Prote 99.5 5.5E-11 1.2E-15 117.1 33.8 448 11-487 5-487 (503)
41 KOG1061 Vesicle coat complex A 99.5 2.4E-11 5.3E-16 117.6 26.3 451 11-484 15-506 (734)
42 PF10508 Proteasom_PSMB: Prote 99.5 1.5E-10 3.2E-15 114.1 30.4 388 13-425 42-461 (503)
43 KOG4224 Armadillo repeat prote 99.5 8.9E-12 1.9E-16 109.6 18.4 373 14-387 90-493 (550)
44 KOG2259 Uncharacterized conser 99.4 4.8E-10 1E-14 106.3 26.8 392 56-469 88-515 (823)
45 COG5064 SRP1 Karyopherin (impo 99.4 1.6E-11 3.5E-16 107.1 15.6 336 166-501 74-441 (526)
46 KOG1062 Vesicle coat complex A 99.4 4.9E-09 1.1E-13 102.0 32.4 437 56-510 116-594 (866)
47 KOG1943 Beta-tubulin folding c 99.4 1.7E-08 3.8E-13 101.3 36.8 447 46-501 339-835 (1133)
48 KOG1060 Vesicle coat complex A 99.4 1.7E-08 3.7E-13 97.9 35.5 414 50-492 110-559 (968)
49 COG5240 SEC21 Vesicle coat com 99.4 1E-08 2.2E-13 96.0 32.8 256 198-464 260-554 (898)
50 COG1413 FOG: HEAT repeat [Ener 99.4 8.3E-10 1.8E-14 104.4 26.6 250 163-466 43-305 (335)
51 COG5064 SRP1 Karyopherin (impo 99.3 1.7E-10 3.6E-15 100.9 18.4 375 89-463 74-494 (526)
52 KOG1062 Vesicle coat complex A 99.3 2.2E-08 4.8E-13 97.5 34.6 423 13-463 111-579 (866)
53 KOG2259 Uncharacterized conser 99.3 3.1E-09 6.6E-14 101.0 27.5 250 242-504 199-512 (823)
54 COG5240 SEC21 Vesicle coat com 99.3 4.5E-09 9.9E-14 98.3 27.7 255 160-425 261-554 (898)
55 KOG1061 Vesicle coat complex A 99.3 1.7E-09 3.7E-14 105.1 25.2 437 6-464 83-527 (734)
56 COG1413 FOG: HEAT repeat [Ener 99.3 2.2E-09 4.8E-14 101.5 25.2 276 126-462 44-332 (335)
57 TIGR02270 conserved hypothetic 99.3 1.7E-09 3.7E-14 102.2 23.2 240 203-502 55-295 (410)
58 TIGR02270 conserved hypothetic 99.3 2.1E-09 4.5E-14 101.6 23.8 118 165-307 88-205 (410)
59 PF12348 CLASP_N: CLASP N term 99.2 9.4E-10 2E-14 97.8 18.5 188 280-470 7-211 (228)
60 COG5096 Vesicle coat complex, 99.2 4.3E-07 9.3E-12 90.5 35.8 433 18-468 28-522 (757)
61 KOG1020 Sister chromatid cohes 99.2 1.7E-06 3.7E-11 90.3 39.3 455 11-469 818-1409(1692)
62 PF12348 CLASP_N: CLASP N term 99.2 5.1E-09 1.1E-13 93.1 19.1 195 86-314 7-211 (228)
63 KOG1243 Protein kinase [Genera 99.1 1.4E-09 3E-14 104.8 15.7 254 172-427 263-516 (690)
64 KOG1059 Vesicle coat complex A 99.1 2.3E-07 5.1E-12 89.4 29.8 219 81-309 139-365 (877)
65 KOG1058 Vesicle coat complex C 99.1 3E-07 6.4E-12 89.1 30.1 398 12-426 23-463 (948)
66 KOG1059 Vesicle coat complex A 99.1 7E-07 1.5E-11 86.2 31.5 313 147-469 128-494 (877)
67 KOG1243 Protein kinase [Genera 99.1 4.4E-09 9.5E-14 101.4 15.8 252 215-468 267-518 (690)
68 KOG1991 Nuclear transport rece 99.1 2E-05 4.2E-10 79.5 40.4 186 260-446 391-599 (1010)
69 KOG1248 Uncharacterized conser 99.0 1.4E-05 3.1E-10 82.0 40.1 452 30-488 371-882 (1176)
70 KOG1991 Nuclear transport rece 99.0 1.1E-05 2.5E-10 81.1 38.4 330 139-469 103-536 (1010)
71 KOG1248 Uncharacterized conser 99.0 4.3E-05 9.4E-10 78.6 41.9 346 125-472 518-905 (1176)
72 KOG1078 Vesicle coat complex C 98.9 1.3E-06 2.9E-11 85.3 26.8 424 13-464 68-531 (865)
73 KOG1078 Vesicle coat complex C 98.9 6.1E-06 1.3E-10 80.8 30.3 407 57-492 74-520 (865)
74 PF12460 MMS19_C: RNAPII trans 98.9 6.8E-06 1.5E-10 79.7 31.3 288 99-388 56-395 (415)
75 KOG4413 26S proteasome regulat 98.9 2.5E-05 5.5E-10 68.8 30.7 388 106-513 63-515 (524)
76 KOG1820 Microtubule-associated 98.9 9.8E-07 2.1E-11 89.6 25.3 337 126-472 64-450 (815)
77 COG5096 Vesicle coat complex, 98.9 9.4E-06 2E-10 81.2 31.4 143 161-310 53-196 (757)
78 KOG1077 Vesicle coat complex A 98.9 3.7E-05 8.1E-10 74.5 33.5 294 11-312 113-436 (938)
79 KOG1992 Nuclear export recepto 98.9 6.8E-06 1.5E-10 80.9 29.1 454 52-511 10-589 (960)
80 KOG1058 Vesicle coat complex C 98.8 2.6E-05 5.7E-10 76.1 31.8 387 57-468 30-428 (948)
81 PF12460 MMS19_C: RNAPII trans 98.8 1.1E-05 2.3E-10 78.3 29.4 334 12-350 2-396 (415)
82 KOG1077 Vesicle coat complex A 98.8 0.00015 3.2E-09 70.5 35.5 295 49-352 112-437 (938)
83 KOG1020 Sister chromatid cohes 98.8 0.00011 2.3E-09 77.5 36.6 396 90-487 820-1276(1692)
84 KOG1820 Microtubule-associated 98.8 3.6E-07 7.7E-12 92.7 18.3 199 233-435 245-452 (815)
85 KOG2062 26S proteasome regulat 98.8 1.7E-05 3.7E-10 77.2 28.1 279 144-452 398-681 (929)
86 KOG4535 HEAT and armadillo rep 98.8 1.1E-05 2.4E-10 74.7 25.5 451 18-468 5-606 (728)
87 KOG0168 Putative ubiquitin fus 98.7 1E-05 2.2E-10 79.9 24.2 184 11-195 169-367 (1051)
88 PF12755 Vac14_Fab1_bd: Vacuol 98.7 2.6E-07 5.6E-12 68.1 10.3 87 141-228 2-93 (97)
89 KOG2137 Protein kinase [Signal 98.7 1.5E-06 3.2E-11 84.8 18.0 231 254-487 286-520 (700)
90 KOG1992 Nuclear export recepto 98.7 0.00027 6E-09 70.0 33.0 418 7-430 3-531 (960)
91 KOG2137 Protein kinase [Signal 98.7 2.2E-06 4.8E-11 83.6 18.7 233 175-410 285-521 (700)
92 PF12755 Vac14_Fab1_bd: Vacuol 98.7 3.8E-07 8.2E-12 67.2 10.5 89 296-385 2-94 (97)
93 KOG0567 HEAT repeat-containing 98.7 5.9E-06 1.3E-10 70.6 18.5 220 166-425 39-279 (289)
94 PF05804 KAP: Kinesin-associat 98.6 0.00011 2.4E-09 74.3 30.5 361 105-472 268-655 (708)
95 PF12717 Cnd1: non-SMC mitotic 98.6 5.7E-06 1.2E-10 69.8 18.0 111 215-328 1-111 (178)
96 PF13646 HEAT_2: HEAT repeats; 98.6 3.6E-07 7.7E-12 67.5 9.1 85 361-461 2-88 (88)
97 PF12717 Cnd1: non-SMC mitotic 98.6 5.6E-06 1.2E-10 69.9 17.2 102 333-437 2-103 (178)
98 PF05804 KAP: Kinesin-associat 98.6 0.00051 1.1E-08 69.7 33.6 345 144-495 268-640 (708)
99 PF13646 HEAT_2: HEAT repeats; 98.6 5.3E-07 1.2E-11 66.5 9.7 85 322-422 2-88 (88)
100 KOG2032 Uncharacterized conser 98.6 0.00027 5.9E-09 66.1 28.6 253 202-465 258-531 (533)
101 KOG2025 Chromosome condensatio 98.6 0.00034 7.5E-09 68.2 29.9 220 106-345 62-291 (892)
102 KOG0413 Uncharacterized conser 98.6 0.00024 5.3E-09 71.4 29.5 146 333-483 945-1091(1529)
103 KOG1293 Proteins containing ar 98.6 0.00097 2.1E-08 64.7 34.4 451 14-466 14-534 (678)
104 KOG0567 HEAT repeat-containing 98.6 3.4E-05 7.3E-10 66.1 20.5 221 205-469 39-284 (289)
105 KOG4535 HEAT and armadillo rep 98.5 7.9E-05 1.7E-09 69.2 23.5 405 98-502 8-602 (728)
106 KOG4413 26S proteasome regulat 98.5 0.00024 5.3E-09 62.8 25.2 338 29-387 63-439 (524)
107 KOG2032 Uncharacterized conser 98.5 0.0002 4.4E-09 66.9 25.5 282 138-426 230-531 (533)
108 KOG4653 Uncharacterized conser 98.4 4.1E-05 8.9E-10 76.0 20.6 213 164-387 728-964 (982)
109 KOG2274 Predicted importin 9 [ 98.4 0.0028 6.1E-08 63.9 34.4 463 13-482 94-666 (1005)
110 KOG0413 Uncharacterized conser 98.4 0.00012 2.7E-09 73.4 23.5 146 294-444 945-1091(1529)
111 PF04826 Arm_2: Armadillo-like 98.4 3.3E-05 7.2E-10 68.4 18.0 186 90-275 17-210 (254)
112 KOG0168 Putative ubiquitin fus 98.4 0.00031 6.8E-09 69.9 25.5 189 86-274 168-368 (1051)
113 COG5116 RPN2 26S proteasome re 98.4 4.4E-05 9.5E-10 72.3 18.7 280 145-450 393-676 (926)
114 KOG1967 DNA repair/transcripti 98.4 0.0037 8.1E-08 63.2 32.5 150 315-464 863-1023(1030)
115 KOG2025 Chromosome condensatio 98.4 0.0012 2.5E-08 64.7 28.2 205 199-423 82-291 (892)
116 KOG2956 CLIP-associating prote 98.4 2.5E-05 5.4E-10 72.3 16.1 187 11-202 288-487 (516)
117 PF04826 Arm_2: Armadillo-like 98.3 4.7E-05 1E-09 67.4 17.2 191 280-470 12-210 (254)
118 cd00020 ARM Armadillo/beta-cat 98.3 3.4E-06 7.3E-11 66.5 9.2 107 358-464 7-119 (120)
119 PF05004 IFRD: Interferon-rela 98.3 0.0002 4.4E-09 65.9 21.8 203 285-487 48-285 (309)
120 COG5218 YCG1 Chromosome conden 98.3 0.0036 7.8E-08 60.1 30.4 166 11-189 93-263 (885)
121 KOG2274 Predicted importin 9 [ 98.3 0.0054 1.2E-07 62.0 35.5 71 124-194 89-159 (1005)
122 PF05918 API5: Apoptosis inhib 98.3 0.00027 5.9E-09 68.9 22.5 278 99-389 35-343 (556)
123 cd00020 ARM Armadillo/beta-cat 98.3 6.8E-06 1.5E-10 64.7 9.8 106 320-425 8-119 (120)
124 KOG2062 26S proteasome regulat 98.3 0.00018 3.9E-09 70.4 19.9 258 203-487 414-677 (929)
125 PF05918 API5: Apoptosis inhib 98.2 0.0011 2.5E-08 64.7 25.1 35 410-445 281-315 (556)
126 KOG4653 Uncharacterized conser 98.2 0.00025 5.4E-09 70.7 20.6 216 247-468 733-967 (982)
127 PF05004 IFRD: Interferon-rela 98.2 0.00057 1.2E-08 62.9 22.0 149 241-390 86-260 (309)
128 KOG2956 CLIP-associating prote 98.2 0.00026 5.7E-09 65.8 18.8 35 279-313 447-481 (516)
129 PF13001 Ecm29: Proteasome sta 98.2 0.00094 2E-08 66.3 24.2 187 280-469 237-447 (501)
130 KOG1525 Sister chromatid cohes 98.1 0.0011 2.4E-08 71.0 24.3 291 93-388 57-406 (1266)
131 PF13513 HEAT_EZ: HEAT-like re 98.1 5.7E-06 1.2E-10 54.5 4.1 53 411-463 1-55 (55)
132 COG5218 YCG1 Chromosome conden 98.1 0.0013 2.7E-08 63.0 20.6 170 160-343 88-261 (885)
133 KOG1949 Uncharacterized conser 98.1 0.016 3.4E-07 57.1 28.2 189 160-348 126-331 (1005)
134 KOG1525 Sister chromatid cohes 98.0 0.0062 1.3E-07 65.5 27.5 327 133-466 58-406 (1266)
135 PF13513 HEAT_EZ: HEAT-like re 98.0 2.1E-05 4.5E-10 51.7 6.1 53 333-385 1-55 (55)
136 KOG1949 Uncharacterized conser 98.0 0.0056 1.2E-07 60.1 24.3 146 281-426 175-331 (1005)
137 KOG1822 Uncharacterized conser 98.0 0.0097 2.1E-07 65.0 27.7 284 144-427 803-1128(2067)
138 COG5116 RPN2 26S proteasome re 98.0 0.00046 1E-08 65.6 15.8 294 11-331 372-674 (926)
139 KOG0414 Chromosome condensatio 98.0 0.013 2.8E-07 61.2 27.1 179 261-448 897-1083(1251)
140 PF13001 Ecm29: Proteasome sta 97.9 0.0051 1.1E-07 61.1 24.1 222 202-426 237-488 (501)
141 PF02985 HEAT: HEAT repeat; I 97.9 2E-05 4.4E-10 44.4 3.9 30 437-466 1-30 (31)
142 PF14500 MMS19_N: Dos2-interac 97.9 0.0081 1.8E-07 53.8 22.1 140 209-351 6-156 (262)
143 KOG0946 ER-Golgi vesicle-tethe 97.9 0.04 8.8E-07 55.1 34.4 222 126-347 123-398 (970)
144 PF12719 Cnd3: Nuclear condens 97.8 0.0052 1.1E-07 56.8 20.8 176 163-368 26-207 (298)
145 PF14500 MMS19_N: Dos2-interac 97.8 0.011 2.4E-07 52.9 21.9 227 168-399 4-249 (262)
146 PLN03076 ARF guanine nucleotid 97.8 0.054 1.2E-06 61.1 31.2 285 199-484 1134-1511(1780)
147 KOG1967 DNA repair/transcripti 97.7 0.0005 1.1E-08 69.1 13.0 151 235-385 861-1022(1030)
148 PF02985 HEAT: HEAT repeat; I 97.7 5.8E-05 1.3E-09 42.5 4.0 29 164-192 1-29 (31)
149 KOG1517 Guanine nucleotide bin 97.7 0.0015 3.2E-08 66.7 15.9 186 278-466 470-672 (1387)
150 KOG0414 Chromosome condensatio 97.7 0.11 2.4E-06 54.7 39.2 134 353-492 914-1052(1251)
151 KOG1293 Proteins containing ar 97.6 0.084 1.8E-06 51.9 32.9 363 124-489 94-518 (678)
152 PLN03076 ARF guanine nucleotid 97.6 0.029 6.4E-07 63.1 25.1 271 83-353 1134-1494(1780)
153 PF01347 Vitellogenin_N: Lipop 97.5 0.033 7.2E-07 57.7 23.4 187 176-384 377-586 (618)
154 smart00638 LPD_N Lipoprotein N 97.5 0.012 2.6E-07 60.3 19.4 163 164-342 394-572 (574)
155 PF08506 Cse1: Cse1; InterPro 97.5 0.018 3.8E-07 54.5 18.8 119 371-492 224-363 (370)
156 PF01347 Vitellogenin_N: Lipop 97.5 0.027 5.8E-07 58.4 21.9 151 214-382 447-617 (618)
157 COG5234 CIN1 Beta-tubulin fold 97.4 0.073 1.6E-06 52.6 22.4 434 14-464 251-757 (993)
158 PF08506 Cse1: Cse1; InterPro 97.4 0.018 4E-07 54.4 18.2 56 294-350 225-286 (370)
159 KOG1517 Guanine nucleotide bin 97.4 0.012 2.6E-07 60.6 17.3 212 258-470 487-737 (1387)
160 PF12530 DUF3730: Protein of u 97.4 0.039 8.4E-07 48.9 19.0 193 94-293 9-216 (234)
161 PF12719 Cnd3: Nuclear condens 97.3 0.012 2.6E-07 54.5 15.8 157 286-447 33-208 (298)
162 KOG1822 Uncharacterized conser 97.3 0.42 9E-06 53.1 39.0 230 39-268 867-1125(2067)
163 KOG2933 Uncharacterized conser 97.2 0.019 4E-07 51.0 14.6 174 281-459 89-271 (334)
164 smart00638 LPD_N Lipoprotein N 97.2 0.041 8.8E-07 56.4 19.8 158 315-492 393-566 (574)
165 COG5098 Chromosome condensatio 97.2 0.28 6.2E-06 48.7 25.8 107 360-466 301-416 (1128)
166 KOG4524 Uncharacterized conser 97.2 0.4 8.7E-06 49.6 26.0 114 396-510 802-935 (1014)
167 PF12231 Rif1_N: Rap1-interact 97.1 0.27 5.9E-06 47.0 25.9 267 18-311 2-305 (372)
168 KOG0392 SNF2 family DNA-depend 97.1 0.024 5.3E-07 59.6 16.4 170 297-469 750-929 (1549)
169 KOG0891 DNA-dependent protein 97.1 0.93 2E-05 52.8 30.4 210 14-232 486-720 (2341)
170 PF11864 DUF3384: Domain of un 97.1 0.36 7.8E-06 47.8 33.3 276 23-308 4-329 (464)
171 COG5656 SXM1 Importin, protein 97.1 0.4 8.7E-06 48.1 35.8 429 48-484 4-548 (970)
172 KOG1993 Nuclear transport rece 97.1 0.43 9.2E-06 48.3 33.3 170 315-487 484-667 (978)
173 KOG0392 SNF2 family DNA-depend 97.0 0.05 1.1E-06 57.4 17.5 174 293-468 142-328 (1549)
174 KOG2213 Apoptosis inhibitor 5/ 97.0 0.26 5.6E-06 45.5 19.9 245 140-390 39-317 (460)
175 KOG2933 Uncharacterized conser 97.0 0.018 3.9E-07 51.1 12.2 164 210-378 96-268 (334)
176 KOG2021 Nuclear mRNA export fa 97.0 0.48 1E-05 47.6 39.1 462 10-486 4-587 (980)
177 PF12530 DUF3730: Protein of u 97.0 0.23 5.1E-06 43.9 21.5 168 170-346 8-187 (234)
178 PF12074 DUF3554: Domain of un 96.9 0.21 4.6E-06 47.3 20.2 107 397-505 204-330 (339)
179 PF11864 DUF3384: Domain of un 96.9 0.49 1.1E-05 46.8 27.5 283 62-352 5-335 (464)
180 cd00256 VATPase_H VATPase_H, r 96.9 0.43 9.3E-06 45.9 24.9 193 107-309 55-258 (429)
181 PF14664 RICTOR_N: Rapamycin-i 96.9 0.37 8E-06 45.8 21.3 226 85-310 24-270 (371)
182 KOG1048 Neural adherens juncti 96.9 0.3 6.6E-06 49.3 20.9 330 10-347 234-640 (717)
183 PF10363 DUF2435: Protein of u 96.8 0.023 5E-07 41.5 9.7 82 401-487 7-89 (92)
184 KOG0946 ER-Golgi vesicle-tethe 96.7 0.78 1.7E-05 46.5 28.6 324 161-486 20-418 (970)
185 cd00256 VATPase_H VATPase_H, r 96.7 0.59 1.3E-05 45.0 21.7 285 133-426 109-425 (429)
186 KOG2011 Sister chromatid cohes 96.7 0.33 7.1E-06 51.3 20.3 131 289-422 296-431 (1048)
187 PF13251 DUF4042: Domain of un 96.6 0.045 9.7E-07 45.7 11.5 21 134-154 49-69 (182)
188 PF13251 DUF4042: Domain of un 96.6 0.041 8.8E-07 46.0 11.2 145 102-269 2-173 (182)
189 PF10363 DUF2435: Protein of u 96.6 0.026 5.6E-07 41.2 8.9 70 165-234 5-75 (92)
190 KOG1993 Nuclear transport rece 96.6 1.1 2.3E-05 45.7 33.0 298 48-347 488-811 (978)
191 KOG4500 Rho/Rac GTPase guanine 96.6 0.69 1.5E-05 43.4 27.1 133 357-489 314-459 (604)
192 cd08050 TAF6 TATA Binding Prot 96.5 0.048 1E-06 51.3 12.6 137 362-505 182-342 (343)
193 PF10274 ParcG: Parkin co-regu 96.5 0.09 1.9E-06 43.6 12.3 123 356-478 36-179 (183)
194 PF08569 Mo25: Mo25-like; Int 96.5 0.74 1.6E-05 42.9 24.1 125 363-487 169-313 (335)
195 PF12074 DUF3554: Domain of un 96.5 0.45 9.8E-06 45.0 18.8 202 279-485 21-254 (339)
196 KOG2160 Armadillo/beta-catenin 96.4 0.067 1.4E-06 48.9 12.2 100 20-119 94-200 (342)
197 PF11865 DUF3385: Domain of un 96.4 0.046 1E-06 45.0 10.4 142 318-467 9-159 (160)
198 KOG1851 Uncharacterized conser 96.4 2.2 4.7E-05 47.0 32.2 75 394-468 1523-1601(1710)
199 KOG2160 Armadillo/beta-catenin 96.3 0.48 1E-05 43.5 16.7 174 58-232 94-283 (342)
200 PF03378 CAS_CSE1: CAS/CSE pro 96.3 0.84 1.8E-05 44.4 19.6 189 242-432 72-278 (435)
201 PF12054 DUF3535: Domain of un 96.3 0.72 1.6E-05 45.0 19.2 76 100-175 101-180 (441)
202 KOG0889 Histone acetyltransfer 96.1 3.4 7.4E-05 49.5 25.5 303 85-406 983-1328(3550)
203 PF03378 CAS_CSE1: CAS/CSE pro 96.1 1.5 3.4E-05 42.6 21.0 191 161-356 69-280 (435)
204 KOG2011 Sister chromatid cohes 96.0 2.4 5.2E-05 45.2 22.4 135 325-462 293-432 (1048)
205 PF08713 DNA_alkylation: DNA a 96.0 0.53 1.2E-05 41.1 15.7 134 201-349 50-185 (213)
206 KOG1851 Uncharacterized conser 95.9 3.7 8E-05 45.3 33.2 157 315-472 1522-1685(1710)
207 PF11701 UNC45-central: Myosin 95.8 0.074 1.6E-06 43.7 8.8 130 97-227 16-155 (157)
208 KOG2005 26S proteasome regulat 95.8 1.8 3.8E-05 43.2 19.0 72 4-76 446-518 (878)
209 PF04118 Dopey_N: Dopey, N-ter 95.8 1.5 3.4E-05 40.2 21.0 177 282-464 56-253 (307)
210 PF10274 ParcG: Parkin co-regu 95.7 0.3 6.5E-06 40.6 11.6 113 279-391 37-168 (183)
211 cd08050 TAF6 TATA Binding Prot 95.7 0.25 5.5E-06 46.5 12.8 138 164-308 179-339 (343)
212 PF11865 DUF3385: Domain of un 95.6 0.072 1.6E-06 43.9 8.0 29 202-230 10-39 (160)
213 PF10521 DUF2454: Protein of u 95.6 1.1 2.3E-05 41.2 16.4 39 160-198 116-154 (282)
214 KOG2021 Nuclear mRNA export fa 95.6 3.1 6.8E-05 42.2 33.5 130 99-230 206-363 (980)
215 PF04118 Dopey_N: Dopey, N-ter 95.5 1.3 2.9E-05 40.7 16.4 128 99-231 68-201 (307)
216 PF14868 DUF4487: Domain of un 95.5 3.2 6.9E-05 41.6 22.2 85 381-466 464-553 (559)
217 KOG2022 Nuclear transport rece 95.4 3.8 8.3E-05 42.4 28.9 162 198-363 458-634 (982)
218 PF08713 DNA_alkylation: DNA a 95.4 0.52 1.1E-05 41.1 13.5 130 127-270 53-184 (213)
219 COG5656 SXM1 Importin, protein 95.4 3.5 7.5E-05 41.9 36.4 329 39-368 399-776 (970)
220 KOG2149 Uncharacterized conser 95.4 0.62 1.3E-05 43.5 13.8 126 360-485 60-192 (393)
221 KOG2759 Vacuolar H+-ATPase V1 95.3 2.5 5.5E-05 39.7 26.8 119 105-232 65-187 (442)
222 PF12054 DUF3535: Domain of un 95.3 0.72 1.6E-05 45.1 14.9 74 139-212 101-178 (441)
223 KOG2022 Nuclear transport rece 95.3 4.3 9.3E-05 42.1 33.4 174 63-241 440-629 (982)
224 KOG2081 Nuclear transport regu 95.2 3.5 7.6E-05 40.4 32.6 312 161-482 151-510 (559)
225 PF12231 Rif1_N: Rap1-interact 95.2 3.2 6.9E-05 39.8 27.4 232 99-351 59-306 (372)
226 PF10521 DUF2454: Protein of u 95.1 0.84 1.8E-05 41.8 14.1 40 448-487 236-277 (282)
227 PF03224 V-ATPase_H_N: V-ATPas 95.1 1.1 2.4E-05 41.8 15.3 30 474-503 238-269 (312)
228 KOG0803 Predicted E3 ubiquitin 95.0 2.7 5.7E-05 46.4 19.1 224 11-254 43-289 (1312)
229 KOG2973 Uncharacterized conser 95.0 1.9 4.1E-05 38.8 14.9 100 246-348 8-111 (353)
230 PF08167 RIX1: rRNA processing 94.9 1.1 2.4E-05 37.1 13.1 109 124-234 24-146 (165)
231 PF14664 RICTOR_N: Rapamycin-i 94.9 3.6 7.7E-05 39.3 20.8 176 294-471 82-275 (371)
232 KOG0891 DNA-dependent protein 94.8 12 0.00025 44.4 25.7 252 207-462 486-760 (2341)
233 PF08569 Mo25: Mo25-like; Int 94.8 3.6 7.9E-05 38.5 19.9 184 199-388 73-284 (335)
234 KOG2549 Transcription initiati 94.7 1.1 2.4E-05 43.6 13.7 120 361-487 210-351 (576)
235 PF08167 RIX1: rRNA processing 94.5 2.4 5.2E-05 35.2 14.3 77 158-234 20-100 (165)
236 KOG1848 Uncharacterized conser 94.5 7.3 0.00016 42.6 20.0 216 132-347 849-1131(1610)
237 PF05536 Neurochondrin: Neuroc 94.4 6.5 0.00014 39.7 32.5 175 99-275 70-266 (543)
238 PF08767 CRM1_C: CRM1 C termin 94.3 3.6 7.8E-05 38.4 16.3 135 334-469 42-198 (319)
239 cd03568 VHS_STAM VHS domain fa 94.3 2.1 4.5E-05 34.5 12.8 74 396-469 36-114 (144)
240 PF12830 Nipped-B_C: Sister ch 94.3 0.28 6.1E-06 41.7 8.3 67 357-425 7-73 (187)
241 KOG0803 Predicted E3 ubiquitin 94.1 9.5 0.00021 42.4 20.7 85 400-485 237-330 (1312)
242 KOG2973 Uncharacterized conser 94.1 2.1 4.6E-05 38.5 13.1 176 324-504 8-205 (353)
243 COG5095 TAF6 Transcription ini 94.0 1.1 2.4E-05 39.9 11.2 109 367-482 207-335 (450)
244 PF01603 B56: Protein phosphat 93.9 6.6 0.00014 38.2 22.1 222 240-465 132-370 (409)
245 COG5098 Chromosome condensatio 93.9 7.9 0.00017 39.1 31.7 108 165-272 301-417 (1128)
246 KOG2149 Uncharacterized conser 93.9 0.84 1.8E-05 42.6 10.9 110 11-121 60-176 (393)
247 KOG1848 Uncharacterized conser 93.9 12 0.00026 41.1 22.7 108 358-465 997-1132(1610)
248 PF12830 Nipped-B_C: Sister ch 93.8 3.3 7.2E-05 35.2 13.8 73 316-390 5-77 (187)
249 KOG2549 Transcription initiati 93.6 2.5 5.5E-05 41.2 13.8 139 164-309 208-370 (576)
250 KOG2122 Beta-catenin-binding p 93.6 12 0.00027 41.5 19.6 72 395-466 528-602 (2195)
251 PF01603 B56: Protein phosphat 93.5 7.8 0.00017 37.7 22.9 231 250-484 99-345 (409)
252 KOG0889 Histone acetyltransfer 93.5 24 0.00051 43.1 29.9 283 201-486 983-1330(3550)
253 KOG2213 Apoptosis inhibitor 5/ 93.4 6.7 0.00015 36.7 19.8 37 56-96 70-106 (460)
254 PF07571 DUF1546: Protein of u 93.4 0.43 9.3E-06 35.0 6.7 70 408-481 17-90 (92)
255 cd03568 VHS_STAM VHS domain fa 93.4 3 6.6E-05 33.5 12.1 74 162-235 36-114 (144)
256 PF00514 Arm: Armadillo/beta-c 93.4 0.19 4.2E-06 30.2 4.2 29 436-464 12-40 (41)
257 KOG4524 Uncharacterized conser 93.3 12 0.00027 39.4 21.6 93 317-409 801-901 (1014)
258 PF08389 Xpo1: Exportin 1-like 93.3 0.87 1.9E-05 36.9 9.4 62 202-265 82-148 (148)
259 PF05536 Neurochondrin: Neuroc 93.3 10 0.00022 38.4 33.3 175 178-353 72-266 (543)
260 PF11698 V-ATPase_H_C: V-ATPas 93.2 0.68 1.5E-05 35.4 7.6 68 163-230 43-114 (119)
261 PF14868 DUF4487: Domain of un 93.1 11 0.00023 38.1 25.0 103 66-171 247-352 (559)
262 KOG2081 Nuclear transport regu 93.1 9.8 0.00021 37.5 33.2 281 203-488 154-481 (559)
263 cd06561 AlkD_like A new struct 93.0 5.3 0.00011 34.3 17.6 90 251-349 82-171 (197)
264 PF12765 Cohesin_HEAT: HEAT re 93.0 0.16 3.6E-06 30.7 3.3 26 435-460 17-42 (42)
265 KOG2229 Protein required for a 93.0 9.5 0.00021 37.0 22.4 323 162-498 19-376 (616)
266 PF00790 VHS: VHS domain; Int 92.9 4.2 9E-05 32.7 12.6 77 160-236 39-123 (140)
267 cd03561 VHS VHS domain family; 92.8 3 6.4E-05 33.2 11.3 75 396-470 36-117 (133)
268 PF08389 Xpo1: Exportin 1-like 92.6 3.6 7.7E-05 33.2 12.1 140 256-421 3-148 (148)
269 KOG2038 CAATT-binding transcri 92.6 14 0.0003 37.9 23.7 123 239-365 302-426 (988)
270 cd03569 VHS_Hrs_Vps27p VHS dom 92.3 5 0.00011 32.2 12.9 75 396-470 40-119 (142)
271 PF07571 DUF1546: Protein of u 92.3 0.73 1.6E-05 33.7 6.7 69 252-324 17-89 (92)
272 PF12765 Cohesin_HEAT: HEAT re 92.1 0.18 4E-06 30.5 2.7 25 279-303 17-41 (42)
273 PF08161 NUC173: NUC173 domain 92.1 6 0.00013 33.9 12.8 77 91-167 5-83 (198)
274 PF00514 Arm: Armadillo/beta-c 92.0 0.49 1.1E-05 28.4 4.6 29 358-386 12-40 (41)
275 PF11698 V-ATPase_H_C: V-ATPas 91.9 1.4 3.1E-05 33.7 8.0 69 397-465 43-115 (119)
276 KOG2005 26S proteasome regulat 91.9 15 0.00033 37.0 18.9 250 160-427 449-705 (878)
277 cd03567 VHS_GGA VHS domain fam 91.9 4.1 8.9E-05 32.5 10.9 73 397-469 38-120 (139)
278 PF08064 UME: UME (NUC010) dom 91.9 3.5 7.7E-05 31.2 10.1 75 164-240 12-92 (107)
279 PF03224 V-ATPase_H_N: V-ATPas 91.6 12 0.00025 35.0 17.6 69 164-232 106-180 (312)
280 PF00790 VHS: VHS domain; Int 91.5 6.2 0.00013 31.7 13.2 74 396-469 41-122 (140)
281 PF11701 UNC45-central: Myosin 91.5 1.6 3.4E-05 35.9 8.5 131 331-462 17-156 (157)
282 KOG4500 Rho/Rac GTPase guanine 91.4 13 0.00029 35.4 30.8 187 279-465 314-519 (604)
283 PF08623 TIP120: TATA-binding 91.3 2 4.2E-05 35.5 8.7 92 409-501 39-145 (169)
284 cd03567 VHS_GGA VHS domain fam 91.2 6.5 0.00014 31.4 12.5 74 162-235 37-120 (139)
285 PF08064 UME: UME (NUC010) dom 91.1 5.3 0.00012 30.2 10.7 61 409-471 27-89 (107)
286 PF08161 NUC173: NUC173 domain 90.7 9.9 0.00021 32.6 13.1 108 335-444 16-125 (198)
287 cd06561 AlkD_like A new struct 90.2 11 0.00024 32.3 15.1 64 205-271 108-171 (197)
288 PF05997 Nop52: Nucleolar prot 90.0 12 0.00027 32.6 15.3 69 13-81 4-77 (217)
289 smart00288 VHS Domain present 90.0 5.9 0.00013 31.4 10.3 74 396-469 36-115 (133)
290 smart00288 VHS Domain present 89.9 8.5 0.00018 30.5 12.0 74 161-234 35-114 (133)
291 cd00197 VHS_ENTH_ANTH VHS, ENT 89.7 6.2 0.00013 30.3 10.1 69 396-464 36-114 (115)
292 cd03569 VHS_Hrs_Vps27p VHS dom 89.3 10 0.00022 30.5 12.6 75 161-235 39-118 (142)
293 cd07064 AlkD_like_1 A new stru 88.7 15 0.00033 31.8 17.4 133 202-349 46-180 (208)
294 KOG2153 Protein involved in th 88.6 29 0.00063 35.0 28.1 284 162-448 209-557 (704)
295 COG5101 CRM1 Importin beta-rel 88.6 29 0.00063 34.9 32.6 158 117-274 473-652 (1053)
296 PF14225 MOR2-PAG1_C: Cell mor 88.5 18 0.0004 32.5 14.5 137 360-502 113-256 (262)
297 KOG3678 SARM protein (with ste 88.4 25 0.00054 33.9 15.7 145 11-155 182-337 (832)
298 PF11935 DUF3453: Domain of un 88.3 18 0.00039 32.2 16.5 146 289-448 2-165 (239)
299 COG5537 IRR1 Cohesin [Cell div 88.2 29 0.00063 34.7 15.0 141 165-309 277-422 (740)
300 smart00802 UME Domain in UVSB 88.1 8.5 0.00019 29.1 9.3 73 164-238 12-90 (107)
301 KOG1048 Neural adherens juncti 87.5 38 0.00082 35.0 20.5 366 93-465 240-684 (717)
302 PF11935 DUF3453: Domain of un 87.2 21 0.00046 31.7 15.3 88 397-486 43-164 (239)
303 PF14222 MOR2-PAG1_N: Cell mor 87.2 37 0.0008 34.5 26.7 163 62-231 62-249 (552)
304 cd03565 VHS_Tom1 VHS domain fa 86.7 15 0.00032 29.5 12.4 75 396-470 37-120 (141)
305 PF08623 TIP120: TATA-binding 86.5 3.3 7.1E-05 34.2 6.8 61 174-235 38-98 (169)
306 cd03561 VHS VHS domain family; 85.2 17 0.00037 28.8 11.7 75 161-235 35-116 (133)
307 KOG1837 Uncharacterized conser 84.4 18 0.0004 40.3 12.8 133 103-235 1471-1615(1621)
308 PF09324 DUF1981: Domain of un 84.2 13 0.00029 26.7 8.5 68 160-227 14-84 (86)
309 smart00567 EZ_HEAT E-Z type HE 83.3 1.4 3E-05 24.2 2.4 29 255-291 1-29 (30)
310 COG5369 Uncharacterized conser 83.0 23 0.00049 34.9 11.5 147 319-465 431-594 (743)
311 PF12397 U3snoRNP10: U3 small 83.0 20 0.00043 27.8 11.0 35 356-390 4-39 (121)
312 KOG4199 Uncharacterized conser 82.6 41 0.00088 31.2 26.4 106 282-387 285-403 (461)
313 smart00185 ARM Armadillo/beta- 82.5 2.4 5.2E-05 25.1 3.5 28 437-464 13-40 (41)
314 PF12726 SEN1_N: SEN1 N termin 82.2 74 0.0016 33.9 32.6 138 58-196 93-247 (727)
315 KOG1926 Predicted regulator of 82.1 81 0.0018 34.3 28.1 64 13-76 77-141 (1129)
316 KOG3678 SARM protein (with ste 82.0 51 0.0011 31.9 19.2 149 279-427 179-337 (832)
317 COG5369 Uncharacterized conser 81.8 7.8 0.00017 37.9 8.1 109 357-465 430-545 (743)
318 KOG1222 Kinesin associated pro 81.6 54 0.0012 31.9 24.6 111 145-255 283-400 (791)
319 PF12397 U3snoRNP10: U3 small 81.6 23 0.00049 27.5 11.8 72 199-272 3-76 (121)
320 KOG1566 Conserved protein Mo25 81.6 43 0.00092 30.7 16.1 125 363-487 171-316 (342)
321 COG5095 TAF6 Transcription ini 80.7 44 0.00095 30.3 11.8 131 210-347 206-358 (450)
322 PF08767 CRM1_C: CRM1 C termin 80.5 51 0.0011 30.9 22.5 60 293-352 133-198 (319)
323 cd03572 ENTH_epsin_related ENT 80.3 25 0.00055 27.3 10.7 37 159-195 34-70 (122)
324 COG5101 CRM1 Importin beta-rel 79.5 75 0.0016 32.2 34.9 154 332-485 496-668 (1053)
325 PF14225 MOR2-PAG1_C: Cell mor 79.4 48 0.001 29.9 21.2 137 281-426 112-254 (262)
326 cd00197 VHS_ENTH_ANTH VHS, ENT 79.4 26 0.00056 26.8 11.3 38 160-197 34-71 (115)
327 PF04388 Hamartin: Hamartin pr 79.0 49 0.0011 34.6 13.5 151 9-172 4-161 (668)
328 KOG2199 Signal transducing ada 79.0 23 0.0005 33.3 9.7 87 123-209 43-135 (462)
329 smart00185 ARM Armadillo/beta- 78.7 3.9 8.5E-05 24.1 3.6 28 164-191 13-40 (41)
330 cd03565 VHS_Tom1 VHS domain fa 78.1 34 0.00073 27.5 12.1 74 162-235 37-119 (141)
331 PF04078 Rcd1: Cell differenti 78.1 51 0.0011 29.5 14.8 87 105-191 69-167 (262)
332 cd07064 AlkD_like_1 A new stru 78.0 46 0.00099 28.9 17.7 157 57-232 22-180 (208)
333 PF03130 HEAT_PBS: PBS lyase H 77.8 3 6.6E-05 22.2 2.5 14 374-387 1-14 (27)
334 KOG2122 Beta-catenin-binding p 77.5 1.4E+02 0.0029 34.1 18.4 137 252-388 449-602 (2195)
335 KOG3036 Protein involved in ce 77.1 51 0.0011 29.0 11.3 87 105-191 98-196 (293)
336 PF12783 Sec7_N: Guanine nucle 77.0 40 0.00088 27.9 10.3 71 435-505 72-148 (168)
337 COG1698 Uncharacterized protei 76.8 24 0.00053 25.2 7.6 53 436-488 17-72 (93)
338 PF14668 RICTOR_V: Rapamycin-i 76.5 7.9 0.00017 26.8 4.8 52 415-466 5-59 (73)
339 PF07539 DRIM: Down-regulated 75.6 24 0.00052 28.3 8.1 50 160-214 14-63 (141)
340 COG5234 CIN1 Beta-tubulin fold 74.7 1.1E+02 0.0024 31.6 23.8 147 45-192 243-416 (993)
341 KOG1932 TATA binding protein a 74.0 1.4E+02 0.0031 32.6 16.6 89 333-424 882-978 (1180)
342 KOG1087 Cytosolic sorting prot 73.4 58 0.0013 32.1 11.5 99 365-469 12-116 (470)
343 KOG2199 Signal transducing ada 72.3 86 0.0019 29.7 11.5 97 329-431 22-123 (462)
344 PF14222 MOR2-PAG1_N: Cell mor 72.1 1.2E+02 0.0026 31.0 32.6 35 434-468 469-503 (552)
345 smart00802 UME Domain in UVSB 72.0 41 0.00088 25.5 10.7 59 410-470 28-88 (107)
346 COG4912 Predicted DNA alkylati 71.8 17 0.00036 31.3 6.6 74 82-158 114-187 (222)
347 KOG3036 Protein involved in ce 71.3 73 0.0016 28.1 14.1 69 201-269 123-196 (293)
348 COG5537 IRR1 Cohesin [Cell div 70.5 1.3E+02 0.0027 30.5 21.5 135 283-421 278-417 (740)
349 cd03572 ENTH_epsin_related ENT 68.6 54 0.0012 25.5 10.3 50 436-485 38-92 (122)
350 PF09324 DUF1981: Domain of un 67.8 15 0.00032 26.5 4.8 34 85-118 16-50 (86)
351 COG4912 Predicted DNA alkylati 67.2 51 0.0011 28.5 8.5 69 199-270 115-183 (222)
352 PF07539 DRIM: Down-regulated 66.9 39 0.00084 27.1 7.5 33 83-115 14-46 (141)
353 PF14668 RICTOR_V: Rapamycin-i 66.9 24 0.00053 24.4 5.5 53 375-427 4-59 (73)
354 PF12612 TFCD_C: Tubulin foldi 66.8 64 0.0014 27.5 9.4 30 318-347 6-35 (193)
355 KOG1789 Endocytosis protein RM 65.9 2.1E+02 0.0046 31.4 20.4 367 65-451 1750-2184(2235)
356 KOG2759 Vacuolar H+-ATPase V1 65.1 1.3E+02 0.0029 28.8 26.6 67 89-155 117-187 (442)
357 KOG3961 Uncharacterized conser 64.4 89 0.0019 26.9 9.2 108 396-503 113-242 (262)
358 COG5110 RPN1 26S proteasome re 62.9 1.7E+02 0.0037 29.3 19.8 217 160-387 447-705 (881)
359 COG2733 Predicted membrane pro 62.8 1.4E+02 0.0031 28.4 23.2 29 400-428 304-332 (415)
360 KOG0929 Guanine nucleotide exc 62.6 2.9E+02 0.0063 31.8 17.3 103 288-390 1182-1301(1514)
361 PF04869 Uso1_p115_head: Uso1 62.4 1.3E+02 0.0029 28.0 11.1 194 293-492 51-260 (312)
362 KOG2038 CAATT-binding transcri 62.3 2.1E+02 0.0045 30.1 22.3 125 160-288 301-427 (988)
363 PF12612 TFCD_C: Tubulin foldi 62.2 91 0.002 26.6 9.5 107 84-192 5-116 (193)
364 PF11841 DUF3361: Domain of un 61.1 92 0.002 25.6 11.5 110 360-470 13-136 (160)
365 KOG3961 Uncharacterized conser 60.9 40 0.00087 28.9 6.6 86 202-289 114-201 (262)
366 KOG1087 Cytosolic sorting prot 60.1 1.5E+02 0.0033 29.4 11.4 98 327-430 13-116 (470)
367 COG5110 RPN1 26S proteasome re 57.2 2.2E+02 0.0047 28.6 23.1 97 6-107 446-549 (881)
368 PRK04330 hypothetical protein; 55.2 76 0.0017 22.8 7.5 54 435-488 12-68 (88)
369 PF12333 Ipi1_N: Rix1 complex 54.5 58 0.0013 24.3 6.2 53 434-486 9-64 (102)
370 PF06371 Drf_GBD: Diaphanous G 54.3 1.2E+02 0.0027 25.4 9.2 55 331-385 128-185 (187)
371 KOG1988 Uncharacterized conser 53.7 3.1E+02 0.0067 29.3 18.0 30 437-466 252-282 (970)
372 PF06371 Drf_GBD: Diaphanous G 52.2 1.4E+02 0.0031 25.0 9.7 57 369-425 127-186 (187)
373 KOG1222 Kinesin associated pro 51.6 2.5E+02 0.0054 27.7 23.2 54 160-213 342-397 (791)
374 COG5330 Uncharacterized protei 51.2 1E+02 0.0022 29.1 8.2 65 398-462 8-73 (364)
375 KOG2229 Protein required for a 50.8 2.7E+02 0.0057 27.7 28.0 336 123-470 18-386 (616)
376 cd07920 Pumilio Pumilio-family 50.2 2.2E+02 0.0047 26.6 26.2 31 145-175 21-55 (322)
377 PF04078 Rcd1: Cell differenti 49.7 2E+02 0.0042 25.9 13.3 55 332-386 109-167 (262)
378 KOG1932 TATA binding protein a 48.8 1.9E+02 0.0042 31.7 10.6 108 368-485 653-776 (1180)
379 cd07920 Pumilio Pumilio-family 48.8 2.3E+02 0.0049 26.4 23.0 8 363-370 270-277 (322)
380 KOG3687 Tuberin - Rap/ran-GTPa 48.0 4.1E+02 0.0088 29.1 21.6 61 408-469 441-506 (1697)
381 COG5657 CSE1 CAS/CSE protein i 47.9 3.9E+02 0.0084 28.8 26.2 63 446-509 370-436 (947)
382 KOG2842 Interferon-related pro 47.1 2.6E+02 0.0057 26.6 14.2 201 16-216 67-303 (427)
383 PF14663 RasGEF_N_2: Rapamycin 44.0 1.1E+02 0.0024 23.5 6.4 34 394-427 5-38 (115)
384 PF11841 DUF3361: Domain of un 43.5 1.9E+02 0.004 23.8 10.9 97 217-313 32-135 (160)
385 COG2733 Predicted membrane pro 40.1 3.4E+02 0.0074 26.0 26.0 129 61-193 77-215 (415)
386 PHA02861 uncharacterized prote 37.7 2.1E+02 0.0045 22.7 9.1 115 57-177 13-134 (149)
387 PF04821 TIMELESS: Timeless pr 37.5 2.8E+02 0.006 25.2 8.9 61 6-74 10-70 (266)
388 PF09759 Atx10homo_assoc: Spin 37.5 74 0.0016 23.8 4.3 66 414-482 3-73 (102)
389 KOG2374 Uncharacterized conser 37.3 4.2E+02 0.0091 26.2 10.8 109 359-471 8-131 (661)
390 PF12333 Ipi1_N: Rix1 complex 37.2 1.8E+02 0.0038 21.8 6.5 53 161-213 9-64 (102)
391 KOG4199 Uncharacterized conser 36.8 3.6E+02 0.0079 25.3 22.6 250 249-502 115-402 (461)
392 PF08620 RPAP1_C: RPAP1-like, 35.8 69 0.0015 22.2 3.6 33 8-40 38-70 (73)
393 PF04388 Hamartin: Hamartin pr 35.5 5.6E+02 0.012 27.1 14.6 148 166-327 7-160 (668)
394 smart00582 RPR domain present 35.0 2.1E+02 0.0045 22.0 9.7 70 396-465 31-107 (121)
395 PHA02922 hypothetical protein; 34.3 2.3E+02 0.0051 22.3 7.6 114 58-176 21-140 (153)
396 KOG4646 Uncharacterized conser 34.2 2.4E+02 0.0053 22.5 8.8 95 175-269 29-127 (173)
397 PF06685 DUF1186: Protein of u 32.2 3.8E+02 0.0081 24.1 16.5 27 401-427 115-143 (249)
398 KOG1823 DRIM (Down-regulated i 31.8 8.4E+02 0.018 28.0 26.6 374 121-501 188-634 (1364)
399 PF11919 DUF3437: Domain of un 31.1 1.6E+02 0.0036 21.4 5.1 60 412-472 4-65 (90)
400 PF01417 ENTH: ENTH domain; I 30.4 2.6E+02 0.0057 21.7 8.6 37 396-432 38-77 (125)
401 PF13764 E3_UbLigase_R4: E3 ub 29.3 7.5E+02 0.016 26.8 11.5 47 319-367 229-275 (802)
402 KOG4151 Myosin assembly protei 29.2 4.3E+02 0.0092 27.9 9.3 66 318-385 583-654 (748)
403 KOG3687 Tuberin - Rap/ran-GTPa 29.1 8.1E+02 0.018 27.0 18.5 66 13-78 30-99 (1697)
404 PF14663 RasGEF_N_2: Rapamycin 28.5 1.9E+02 0.004 22.2 5.4 32 357-388 7-38 (115)
405 KOG0267 Microtubule severing p 28.4 2.6E+02 0.0057 29.0 7.5 74 396-470 675-748 (825)
406 PF11919 DUF3437: Domain of un 28.0 1.4E+02 0.003 21.8 4.3 52 142-194 6-60 (90)
407 PF08158 NUC130_3NT: NUC130/3N 28.0 1.3E+02 0.0029 19.2 3.7 32 238-269 16-47 (52)
408 KOG0905 Phosphoinositide 3-kin 27.9 2.3E+02 0.005 31.5 7.4 88 58-159 901-992 (1639)
409 PF12726 SEN1_N: SEN1 N termin 27.8 7.8E+02 0.017 26.4 33.5 113 47-159 119-248 (727)
410 PHA02503 putative transcriptio 27.4 1.6E+02 0.0034 18.2 3.7 33 453-485 15-47 (57)
411 PF14228 MOR2-PAG1_mid: Cell m 26.4 9.9E+02 0.021 27.1 33.7 69 242-310 504-573 (1120)
412 COG5231 VMA13 Vacuolar H+-ATPa 25.8 5.5E+02 0.012 24.0 18.6 30 87-116 150-179 (432)
413 PF06685 DUF1186: Protein of u 25.5 5E+02 0.011 23.3 18.3 46 283-328 114-163 (249)
414 PF13764 E3_UbLigase_R4: E3 ub 25.4 8.9E+02 0.019 26.2 13.4 71 164-236 226-305 (802)
415 KOG2153 Protein involved in th 25.3 7.8E+02 0.017 25.5 30.6 65 280-345 460-524 (704)
416 PF11707 Npa1: Ribosome 60S bi 25.1 5.8E+02 0.013 24.0 18.7 50 217-266 129-183 (330)
417 KOG2753 Uncharacterized conser 25.1 5.8E+02 0.013 24.0 15.9 166 163-347 47-215 (378)
418 PF14228 MOR2-PAG1_mid: Cell m 24.6 1.1E+03 0.023 26.9 30.7 69 320-388 504-573 (1120)
419 COG5330 Uncharacterized protei 24.6 4.6E+02 0.01 24.9 8.0 61 129-189 11-73 (364)
420 KOG4646 Uncharacterized conser 23.4 3.9E+02 0.0085 21.4 9.2 66 162-230 57-127 (173)
421 PF08324 PUL: PUL domain; Int 23.2 5.6E+02 0.012 23.1 11.1 94 137-230 122-230 (268)
422 KOG1566 Conserved protein Mo25 22.7 6.3E+02 0.014 23.5 16.7 106 284-389 170-288 (342)
423 PF09450 DUF2019: Domain of un 22.0 1.6E+02 0.0034 22.2 3.7 24 361-384 50-73 (106)
424 KOG0929 Guanine nucleotide exc 21.9 1.3E+03 0.029 27.0 17.3 224 48-276 1037-1304(1514)
425 COG5209 RCD1 Uncharacterized p 21.5 4.1E+02 0.009 23.3 6.5 74 104-177 118-203 (315)
426 PF02194 PXA: PXA domain; Int 21.3 4.9E+02 0.011 21.7 12.4 27 474-500 158-184 (185)
427 PF04761 Phage_Treg: Lactococc 20.1 2.4E+02 0.0051 17.6 3.9 32 454-485 16-47 (57)
No 1
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-41 Score=330.38 Aligned_cols=490 Identities=55% Similarity=0.855 Sum_probs=457.9
Q ss_pred CCCCCcHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhhccCCchHHHHHHHHHhhcccccccCchhh
Q 010290 5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYA 84 (513)
Q Consensus 5 ~~~~~~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~ 84 (513)
++.+++|..+++.++++|-..|..+.+-+.+++..+|.+.++.+++|++.+..++..+++..++..+|.+....|+..+.
T Consensus 78 ~~~~~~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~ 157 (759)
T KOG0211|consen 78 EDSLYPIAVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYA 157 (759)
T ss_pred ccccccHHHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhccchhHHHHHHHHHhcccchhccchhHH
Confidence 34699999999999999999999999999999999999999999999999944999999999999999999999999999
Q ss_pred hhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH-HHHH
Q 010290 85 NVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA-LKTE 163 (513)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~-~~~~ 163 (513)
..+++.++.+..+.+..||+.+++.+..++...+++....++.|++..+..++....|..++.+++..+...+++ .+.+
T Consensus 158 ~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~e 237 (759)
T KOG0211|consen 158 HMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRE 237 (759)
T ss_pred HHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHH
Confidence 999999999999999999999999999999999998888899999999998888888999999999999998855 8999
Q ss_pred HHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChh-hhhhhH
Q 010290 164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ-DCVAHI 242 (513)
Q Consensus 164 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l 242 (513)
+.+.+.++++|.++.||.++++.++.+++.++.+...+.++|.+..+..|+.+.||.+|...+..+...+... +....+
T Consensus 238 lr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~ 317 (759)
T KOG0211|consen 238 LRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSL 317 (759)
T ss_pred HHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998877 777889
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhC----hHHHHH
Q 010290 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN----PELAIQ 318 (513)
Q Consensus 243 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~----~~~~~~ 318 (513)
.+.+.+..+|.+|.+|..++..+..+...+|.+....+..+.+...++|+.+++|.+++.-...+..... .+...+
T Consensus 318 ~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~ 397 (759)
T KOG0211|consen 318 TESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDS 397 (759)
T ss_pred hHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchh
Confidence 9999999999999999999999999999999977778899999999999999999999999999988776 344556
Q ss_pred hhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHH---HHHHhhhhhhhhhhh
Q 010290 319 HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIIS---KLDQVNQVIGIDLLS 395 (513)
Q Consensus 319 ~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~---~l~~i~~~~~~~~~~ 395 (513)
.++|.+..+..|.+..+|.+.+..+..+.+.+|.+.....+.|.+...++|..+.||.+... .+.......|.+.+.
T Consensus 398 ~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s 477 (759)
T KOG0211|consen 398 SILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVS 477 (759)
T ss_pred hhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhh
Confidence 77899999999999999999999999999999988888899999999999999999999994 444555667888889
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHhhh
Q 010290 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 475 (513)
Q Consensus 396 ~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ 475 (513)
+..+|.+.++..|.+|++|.+.++.+..++...|.+++.+.+.+.+..++.|.+..+|++++..+..++..+|.+|....
T Consensus 478 ~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~ 557 (759)
T KOG0211|consen 478 NSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLE 557 (759)
T ss_pred hhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhcCcchHHHHH
Q 010290 476 IVPQVALIKSSRNLVLNSV 494 (513)
Q Consensus 476 i~~~L~~~~~~~~~~~r~~ 494 (513)
++|.+..+..+++|.+|++
T Consensus 558 ~i~k~L~~~~q~~y~~R~t 576 (759)
T KOG0211|consen 558 EIPKLLAMDLQDNYLVRMT 576 (759)
T ss_pred hhHHHHHHhcCcccchhhH
Confidence 9999999999989999955
No 2
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-32 Score=269.37 Aligned_cols=475 Identities=19% Similarity=0.256 Sum_probs=420.7
Q ss_pred hcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhc
Q 010290 18 LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCT 96 (513)
Q Consensus 18 l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ 96 (513)
...+...+|..++..+..++..+..+.-+.++.|.+.. ..++.-.-|..++..++........+.....+.+...++.+
T Consensus 168 ~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~ 247 (759)
T KOG0211|consen 168 ATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQ 247 (759)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhcc
Confidence 34566778999999999998888766667889999988 44544556666777777666555445567789999999999
Q ss_pred cchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH--HHHHHHHHHHHHcCC
Q 010290 97 VEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA--LKTELRTIYRQLCQD 174 (513)
Q Consensus 97 ~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~--~~~~l~~~l~~l~~d 174 (513)
|.++.||..+..-++.+++.+..+.....++|....+..|+...+|..|...+..+.+.+... ..+.+.+.+.+..+|
T Consensus 248 d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d 327 (759)
T KOG0211|consen 248 DDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVED 327 (759)
T ss_pred ccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcC
Confidence 999999999999999999999998888889999999999999999999999998888776554 678889999999999
Q ss_pred CchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCC----hhhhhhhHHHHHHHhc
Q 010290 175 DMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE----PQDCVAHILPVIVNFS 250 (513)
Q Consensus 175 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~~ 250 (513)
++|.+|.........+...+|++.....+.+.+..+++|+.+++|.+...-...++.... .+...+.++|.+..+.
T Consensus 328 ~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv 407 (759)
T KOG0211|consen 328 GSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLV 407 (759)
T ss_pred hhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHH
Confidence 999999999999999999999877788889999999999999999999999999998877 4444566889999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHH---hhhChHHHHHhhhhhhhhh
Q 010290 251 QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKIC---RILNPELAIQHILPCVKEL 327 (513)
Q Consensus 251 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~---~~~~~~~~~~~l~~~l~~~ 327 (513)
.|.+..||.+.+..+..+...+|.+.....++|.+...++|..+.||......+...- ...|.+...+..+|.+..+
T Consensus 408 ~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el 487 (759)
T KOG0211|consen 408 LDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVEL 487 (759)
T ss_pred hcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhh
Confidence 9999999999998888888888888778899999999999999999999996554433 3446667889999999999
Q ss_pred cCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhc
Q 010290 328 SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 407 (513)
Q Consensus 328 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~ 407 (513)
..|.+|++|.++.+.+..++...|..++.+.+.+.+...+.|.+..+|.+|+..+..++..+|.+|....++|.+.....
T Consensus 488 ~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~ 567 (759)
T KOG0211|consen 488 AEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDL 567 (759)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999988
Q ss_pred CCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhhcCc
Q 010290 408 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKSSR 487 (513)
Q Consensus 408 ~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~~~ 487 (513)
+++|.+|.+.+.++..++..+|.+.+.++++|.+..+..|++++||..+++.+..+...+......+.+.|.+..+.+|+
T Consensus 568 q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~ 647 (759)
T KOG0211|consen 568 QDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQ 647 (759)
T ss_pred CcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCc
Confidence 88999999999999999999999999999999999999999999999999999999999988877789999999988887
Q ss_pred chHHH
Q 010290 488 NLVLN 492 (513)
Q Consensus 488 ~~~~r 492 (513)
+.=.|
T Consensus 648 ~~dvr 652 (759)
T KOG0211|consen 648 ELDVR 652 (759)
T ss_pred ccchh
Confidence 54333
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-30 Score=254.41 Aligned_cols=495 Identities=17% Similarity=0.219 Sum_probs=384.6
Q ss_pred CcHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh--ccCCchHHHHHHHHHhhcccccccC---chh
Q 010290 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE--NNDDDDEVLLAMAEELGVFIPYVGG---LEY 83 (513)
Q Consensus 9 ~~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~--~~~~~~~vr~~~~~~l~~~~~~~~~---~~~ 83 (513)
.++..|+..|.++|..+|..|-+.+..+...- .++|.+.. -...+|++|..++..+.++....-. .+.
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~-------~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTE-------PLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhccc-------chHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 45778999999999999999999998775421 26777777 3567899999999988876653111 122
Q ss_pred hhhhh-HHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH---
Q 010290 84 ANVLL-PPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA--- 159 (513)
Q Consensus 84 ~~~l~-~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~--- 159 (513)
...|. .+|..+...+.+.||+.-++++..+++..-++ -++.+++++.+..+++++..|..|..++..+...++..
T Consensus 77 ~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~ 155 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQP 155 (1075)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccch
Confidence 23333 34556677889999999999999999987776 78889999999999999999999999999998888776
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhh--hhh--hHHHHHH----HHHHhhhccchhHHHHHHHHHHHhhc
Q 010290 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE--AAH--LKSEIMS----IFEELTQDDQDSVRLLAVEGCGALGK 231 (513)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~~~--~~~~l~~----~l~~l~~d~~~~vr~~a~~~l~~l~~ 231 (513)
+...+.+.|.+.+.|++..||..++++++.++.... +.. ....++| .+.+.+.+.+...-..+++++..++.
T Consensus 156 ~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e 235 (1075)
T KOG2171|consen 156 HLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLE 235 (1075)
T ss_pred hHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHh
Confidence 677999999999999988899999999999998874 211 1223444 44455667777778888899988888
Q ss_pred cCCh--hhhhhhHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhCC-----CccccchHHHHHHhcCCCc---------
Q 010290 232 LLEP--QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP-----EPTRSDVVPAYVRLLRDNE--------- 293 (513)
Q Consensus 232 ~~~~--~~~~~~l~~~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~-----~~~~~~ll~~l~~~l~d~~--------- 293 (513)
..++ .+....++.+......+. +..+|..+++.+..+++..+. ..+...+++.++..+.|..
T Consensus 236 ~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d 315 (1075)
T KOG2171|consen 236 SEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNED 315 (1075)
T ss_pred hchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccc
Confidence 7665 234455666666666554 678999999988888765221 1244677788877764211
Q ss_pred -------HHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHH--HHhHHHHHH
Q 010290 294 -------AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT--IEQLLPIFL 364 (513)
Q Consensus 294 -------~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~ 364 (513)
..-...|.+++..+.-.+|++.+...+++.+..++++++|.-|.+++.+++.+++.+++... .+.++|+++
T Consensus 316 ~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl 395 (1075)
T KOG2171|consen 316 DLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVL 395 (1075)
T ss_pred ccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 12466788899999999999888888999999999999999999999999999987765432 378899999
Q ss_pred HhcCCCChHHHHHHHHHHHHhhhhhhh----------------------------------------------hhhhhhH
Q 010290 365 SLLKDEFPDVRLNIISKLDQVNQVIGI----------------------------------------------DLLSQSL 398 (513)
Q Consensus 365 ~~l~d~~~~vr~~a~~~l~~i~~~~~~----------------------------------------------~~~~~~l 398 (513)
+.++|+++.||.+|+.++|.+...+.+ +.+.+.+
T Consensus 396 ~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~l 475 (1075)
T KOG2171|consen 396 NGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGL 475 (1075)
T ss_pred hhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 999999999999999999999766532 1122344
Q ss_pred HH-HHHHhhcCCChhHHHHHHHHHHHHHHHhChhh--HHHHHHHHHHHHhcC----chhHHHHHHHHHHHHHHHHhChhh
Q 010290 399 LP-AIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKD----KVYSIRDAAANNVKRLAEEFGPDW 471 (513)
Q Consensus 399 ~~-~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d----~~~~VR~~a~~~l~~l~~~~~~~~ 471 (513)
+. .+..+.++++..+|..++-+|+.++...+..+ +.+.++|.+.+.+.. ....+|..+.++++-+..++|++.
T Consensus 476 m~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~ 555 (1075)
T KOG2171|consen 476 MEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEK 555 (1075)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhh
Confidence 44 44556677889999999999999999887765 557799999998753 346899999999999999999876
Q ss_pred Hh---hhhHHHHHhhhcC------c--chHHHHHHHHHHHhcccceeehhc
Q 010290 472 AM---QHIVPQVALIKSS------R--NLVLNSVLSLLKNAGIDAVFYMET 511 (513)
Q Consensus 472 ~~---~~i~~~L~~~~~~------~--~~~~r~~~~~~~~i~~~~~~~~~~ 511 (513)
+. +.++..+.....+ + +|....|+..++..|.+|.|||++
T Consensus 556 F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~ 606 (1075)
T KOG2171|consen 556 FLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPV 606 (1075)
T ss_pred hhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHH
Confidence 64 5666666665211 1 788889999999999999999975
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5e-27 Score=232.88 Aligned_cols=470 Identities=17% Similarity=0.204 Sum_probs=369.5
Q ss_pred HHHHhcC-ccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccC--chhhhhhhH
Q 010290 14 LIDELKN-DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG--LEYANVLLP 89 (513)
Q Consensus 14 l~~~l~~-~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~--~~~~~~l~~ 89 (513)
+++.+.+ ..+.+|+.-.+.++.+++...++ .|++|++++.+ .+++++..|..+...|..+...+|. ..+...+.+
T Consensus 84 lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~ 162 (1075)
T KOG2171|consen 84 LLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLR 162 (1075)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHH
Confidence 4555555 46789999999999999999888 89999999999 8899999999999999999988876 357789999
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHhhcC--hHHHH--hhHHHHHH----HhhcCCCcchhhhHHhhhHhhcCCCCHH--
Q 010290 90 PLETLCTVEETCVRDKAVESLCRIGSQMR--EQDVV--EHFIPLVK----RLAAGEWFTARVSSCGLFHVAYPSAPEA-- 159 (513)
Q Consensus 90 ~l~~l~~~~~~~vR~~a~~~l~~l~~~~~--~~~~~--~~~~~~l~----~l~~d~~~~~R~~~~~~l~~~~~~~~~~-- 159 (513)
+|.+.++|++..||..|+++++.++..++ +.... ..++|-+. ...++++...-..+..++..+....++-
T Consensus 163 lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~ 242 (1075)
T KOG2171|consen 163 LFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLR 242 (1075)
T ss_pred HHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHH
Confidence 99999999988899999999999999885 32222 23556443 3344555555566777777777777665
Q ss_pred -HHHHHHHHHHHHcCCC--chHHHHHHHHhHHHHHHHhhh-----hhhHHHHHHHHHHhhhcc----------------c
Q 010290 160 -LKTELRTIYRQLCQDD--MPMVRRSAATNLGKFAATVEA-----AHLKSEIMSIFEELTQDD----------------Q 215 (513)
Q Consensus 160 -~~~~l~~~l~~l~~d~--~~~vr~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~l~~d~----------------~ 215 (513)
+..++++.......++ +..+|..|.+.+..+++..+. ..+...+++.+..+..|. .
T Consensus 243 ~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~ 322 (1075)
T KOG2171|consen 243 PHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDE 322 (1075)
T ss_pred HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccc
Confidence 5667777777777765 689999999999988876322 123445666666554211 1
Q ss_pred hhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCc
Q 010290 216 DSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNE 293 (513)
Q Consensus 216 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~d~~ 293 (513)
..--..|.+++..++..+|++...+.+++.+...+.+++|.-|.+++.+|+.+++.+++.. ..++++|.+.+.++|++
T Consensus 323 ~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dph 402 (1075)
T KOG2171|consen 323 ETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPH 402 (1075)
T ss_pred cCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCC
Confidence 2356778999999999999999999999999999999999999999999999998877643 24789999999999999
Q ss_pred HHHHHHHHHhHHHHHhhhChH---HHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHHhchhhCHHHHHH---hHHH-HHHH
Q 010290 294 AEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDS-SQHVRSALATVIMGMAPILGKDATIE---QLLP-IFLS 365 (513)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~~~~~---~l~~-~l~~ 365 (513)
+.||.+|+.++|++...+.++ .+.+.+.|.+...+.+. +.+|...++.++-.+...+.++.+.+ .++. .+.-
T Consensus 403 prVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~ 482 (1075)
T KOG2171|consen 403 PRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLL 482 (1075)
T ss_pred HHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988776 45567777777776554 67999999999988888777765543 3333 3344
Q ss_pred hcCCCChHHHHHHHHHHHHhhhhhhhhh--hhhhHHHHHHHhhcCC----ChhHHHHHHHHHHHHHHHhChhhHHH---H
Q 010290 366 LLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDR----HWRVRLAIIEYIPLLASQLGVGFFDD---K 436 (513)
Q Consensus 366 ~l~d~~~~vr~~a~~~l~~i~~~~~~~~--~~~~l~~~l~~l~~~~----~~~vR~~~~~~l~~l~~~~~~~~~~~---~ 436 (513)
++..+.+.||..++.+++.++...+... +.+.++|.+...++.. ...+|...+++++.++...|++.|.+ .
T Consensus 483 L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~e 562 (1075)
T KOG2171|consen 483 LLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEE 562 (1075)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHH
Confidence 5667789999999999999998776543 4578999999888654 36688899999999999999887764 4
Q ss_pred HHHHHHHH---hcCchhHHHHHHHHHHHHHHHHhChhhHh--hhhHHHHHhhh
Q 010290 437 LGALCMQW---LKDKVYSIRDAAANNVKRLAEEFGPDWAM--QHIVPQVALIK 484 (513)
Q Consensus 437 ~~~~l~~~---l~d~~~~VR~~a~~~l~~l~~~~~~~~~~--~~i~~~L~~~~ 484 (513)
++..+..+ ..|.+.-.|.....+++.+++.+|++|.. +.++|.|....
T Consensus 563 liqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta 615 (1075)
T KOG2171|consen 563 LIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTA 615 (1075)
T ss_pred HHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhh
Confidence 56666665 44566778899999999999999999863 66777776544
No 5
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.5e-27 Score=218.13 Aligned_cols=379 Identities=19% Similarity=0.190 Sum_probs=284.8
Q ss_pred CCCcHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChH------------------------------------hhhhhhh
Q 010290 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEE------------------------------------RTRKELI 50 (513)
Q Consensus 7 ~~~~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~------------------------------------~~~~~l~ 50 (513)
.+..+..+++.=.|+|+.+|..+...+.+.-. -|+ ....+..
T Consensus 11 ~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~--~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~ 88 (885)
T KOG2023|consen 11 GLQQLAQLLKNSQSPNSETRNNVQEKLEQFNL--FPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVL 88 (885)
T ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhc--ccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHH
Confidence 34556666666677888888888777765421 111 0111222
Q ss_pred hhhhh-----ccCCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcCh----H-
Q 010290 51 PFLSE-----NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE----Q- 120 (513)
Q Consensus 51 ~~l~~-----~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~----~- 120 (513)
.++++ +.|.++-+|......+..++. .++-..|+.++|.|.+++..++....+.|..+|.++++.-.+ +
T Consensus 89 ~yiKs~~l~~lgd~~~lIr~tvGivITTI~s-~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~ 167 (885)
T KOG2023|consen 89 DYIKSECLHGLGDASPLIRATVGIVITTIAS-TGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDV 167 (885)
T ss_pred HHHHHHHHhhccCchHHHHhhhhheeeeeec-ccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhc
Confidence 22222 345666677777666666555 244567899999999999999989999999999999875322 1
Q ss_pred --HHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH---HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhh
Q 010290 121 --DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE 195 (513)
Q Consensus 121 --~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 195 (513)
.-.+.++|.+.++.+++++.+|..|..++..+.-.-+.. ..+.+++.+..+.+|++++||+.+|.++..+...-.
T Consensus 168 ~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~ 247 (885)
T KOG2023|consen 168 LTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP 247 (885)
T ss_pred ccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH
Confidence 112458899999999999999999999999887766666 567889999999999999999999999998887544
Q ss_pred hh--hhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccC-Chh---hhhhhHHHHHHHh----------cC--------
Q 010290 196 AA--HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL-EPQ---DCVAHILPVIVNF----------SQ-------- 251 (513)
Q Consensus 196 ~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~-~~~---~~~~~l~~~l~~~----------~~-------- 251 (513)
+. .....++.++....+|.+++|...|.+.+..+++.- .++ .+.+.++|.+.+. ++
T Consensus 248 dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~v 327 (885)
T KOG2023|consen 248 DKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESV 327 (885)
T ss_pred HhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccC
Confidence 31 124457777778889999999999999998888753 222 2344566665431 11
Q ss_pred ----------------------------C----------CCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCc
Q 010290 252 ----------------------------D----------KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE 293 (513)
Q Consensus 252 ----------------------------d----------~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~ 293 (513)
| .+|..|+..+.+|..+++.+|++. .+.++|.+...+...+
T Consensus 328 pDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~el-L~~l~PlLk~~L~~~~ 406 (885)
T KOG2023|consen 328 PDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDEL-LPILLPLLKEHLSSEE 406 (885)
T ss_pred CchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHH-HHHHHHHHHHHcCcch
Confidence 0 139999999999999999998876 5788999999999999
Q ss_pred HHHHHHHHHhHHHHHhhhChH--HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHH---HHhcC
Q 010290 294 AEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF---LSLLK 368 (513)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l---~~~l~ 368 (513)
+-||++++-++|.+.+.+..- ...+.++|.+..++.|+.+-||.-.|++++.+++..-.+...+++.|.+ ++.+-
T Consensus 407 W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~ll 486 (885)
T KOG2023|consen 407 WKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLL 486 (885)
T ss_pred hhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHh
Confidence 999999999999999976432 4567899999999999999999999999999987665444334455554 44556
Q ss_pred CCChHHHHHHHHHHHHhhhhh
Q 010290 369 DEFPDVRLNIISKLDQVNQVI 389 (513)
Q Consensus 369 d~~~~vr~~a~~~l~~i~~~~ 389 (513)
|.+..|+++|+++++.+-+..
T Consensus 487 D~NK~VQEAAcsAfAtleE~A 507 (885)
T KOG2023|consen 487 DSNKKVQEAACSAFATLEEEA 507 (885)
T ss_pred cccHHHHHHHHHHHHHHHHhc
Confidence 899999999999999886653
No 6
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.5e-26 Score=213.66 Aligned_cols=489 Identities=18% Similarity=0.174 Sum_probs=353.4
Q ss_pred HHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhhHHHH
Q 010290 14 LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLE 92 (513)
Q Consensus 14 l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~ 92 (513)
|.+.|.+.|+..+....+.+.++ +.+.++++...+.. +....|.....|+++++.++..--....|+.+++.+.
T Consensus 61 LKN~L~akd~~~k~~~~qRWl~l-----~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv 135 (859)
T KOG1241|consen 61 LKNSLTAKDPERKQQYQQRWLQL-----PAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLV 135 (859)
T ss_pred HhhhhccCCHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHH
Confidence 34455566665555555544433 34567777777777 7788999999999999998886555677888888888
Q ss_pred HhhccchhH-HHHHHHHHHHHHHhhcChHHHHhh---HH-HHHHHhh-cCCCcchhhhHHhhhHhhcC----CCCHH-HH
Q 010290 93 TLCTVEETC-VRDKAVESLCRIGSQMREQDVVEH---FI-PLVKRLA-AGEWFTARVSSCGLFHVAYP----SAPEA-LK 161 (513)
Q Consensus 93 ~l~~~~~~~-vR~~a~~~l~~l~~~~~~~~~~~~---~~-~~l~~l~-~d~~~~~R~~~~~~l~~~~~----~~~~~-~~ 161 (513)
....++.+. +++.++++++.++..++++..... ++ ..+..+. ..++..+|.+|..++..-.+ ++..+ .+
T Consensus 136 ~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~er 215 (859)
T KOG1241|consen 136 SNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMER 215 (859)
T ss_pred HhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhh
Confidence 877777665 999999999999999999765543 33 3333333 35678999999998874432 34344 66
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh--------------------------------------h------
Q 010290 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--------------------------------------A------ 197 (513)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--------------------------------------~------ 197 (513)
+.+++..++..+.++.+||.++..+|..+....-. +
T Consensus 216 n~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~ 295 (859)
T KOG1241|consen 216 NYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAI 295 (859)
T ss_pred ceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888888888888887776642211 0
Q ss_pred -------------------hhHHHHHHHHHHhhh-------ccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcC
Q 010290 198 -------------------HLKSEIMSIFEELTQ-------DDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ 251 (513)
Q Consensus 198 -------------------~~~~~l~~~l~~l~~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~ 251 (513)
...+.++|.+.+++. |++|..-++|-.||.-++...+++ ..++++|++.+.++
T Consensus 296 e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~-Iv~~Vl~Fiee~i~ 374 (859)
T KOG1241|consen 296 EYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD-IVPHVLPFIEENIQ 374 (859)
T ss_pred HHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc-chhhhHHHHHHhcC
Confidence 011257787777663 345788888888888888777764 56789999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCc---cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhCh----HHHHHhhhhhh
Q 010290 252 DKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP----ELAIQHILPCV 324 (513)
Q Consensus 252 d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~----~~~~~~l~~~l 324 (513)
+++|+-|.+++-++|.+...-.... ...+.+|.+..++.|+.-.||..+.++++++++.+.. +...+.+++.+
T Consensus 375 ~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l 454 (859)
T KOG1241|consen 375 NPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSAL 454 (859)
T ss_pred CcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHH
Confidence 9999999999999999986543322 2356889999999999999999999999999987642 33444555555
Q ss_pred hhhcCCCcHHHHHHHHHHHHHhchhhCHHH--------HHHhHHHHHHHhcC-----C-CChHHHHHHHHHHHHhhhhhh
Q 010290 325 KELSSDSSQHVRSALATVIMGMAPILGKDA--------TIEQLLPIFLSLLK-----D-EFPDVRLNIISKLDQVNQVIG 390 (513)
Q Consensus 325 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--------~~~~l~~~l~~~l~-----d-~~~~vr~~a~~~l~~i~~~~~ 390 (513)
...++| .+++-..+++.+..++++..+.. ..+.+.+++-.+++ | .+.+.|.++.++|+.+++...
T Consensus 455 ~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st 533 (859)
T KOG1241|consen 455 LEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNST 533 (859)
T ss_pred HHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCc
Confidence 555553 57888888888888775543211 11233333333432 2 346788888888888876521
Q ss_pred h--------------------------------------------------------hhhhhhHHHHHHHhhcC-CChhH
Q 010290 391 I--------------------------------------------------------DLLSQSLLPAIVELAED-RHWRV 413 (513)
Q Consensus 391 ~--------------------------------------------------------~~~~~~l~~~l~~l~~~-~~~~v 413 (513)
. ....+.++..+.+++++ .+..+
T Consensus 534 ~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v 613 (859)
T KOG1241|consen 534 DDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVV 613 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccc
Confidence 1 11235666777777776 45567
Q ss_pred HHHHHHHHHHHHHHhChhh--HHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHHhChhhH--hhhhHHHHHhhhcCcc
Q 010290 414 RLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVALIKSSRN 488 (513)
Q Consensus 414 R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l-~d~~~~VR~~a~~~l~~l~~~~~~~~~--~~~i~~~L~~~~~~~~ 488 (513)
...+..+++.++..+|+.| +.+.+.|++...+ +-.+..|..+|+...|++++.++.++. ++.++..|.+.+++++
T Consensus 614 ~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~ 693 (859)
T KOG1241|consen 614 HEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPN 693 (859)
T ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCcc
Confidence 8889999999999999876 5678999999988 677899999999999999999999876 4889999999888864
Q ss_pred hHHH----HHHHHHHH----hcccceeehh
Q 010290 489 LVLN----SVLSLLKN----AGIDAVFYME 510 (513)
Q Consensus 489 ~~~r----~~~~~~~~----i~~~~~~~~~ 510 (513)
.|| .+++++++ ||.+|.+|++
T Consensus 694 -~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~ 722 (859)
T KOG1241|consen 694 -LHRNVKPAILSVFGDIALAIGADFEPYLE 722 (859)
T ss_pred -ccccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 344 67777776 4678888875
No 7
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=7.5e-24 Score=197.46 Aligned_cols=443 Identities=16% Similarity=0.119 Sum_probs=330.1
Q ss_pred HhhhhhhhhhhhhccCCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhh-c--Ch
Q 010290 43 ERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQ-M--RE 119 (513)
Q Consensus 43 ~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~-~--~~ 119 (513)
+....++...+++..++++++|+.+-..+.++-.+- ++-..+.-+|..+ ..++..+|..|--.|..=.+. . .+
T Consensus 9 e~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~p---dfnnYL~~IL~~~-~~~d~~~Rs~aGLlLKNnvr~~~~~~~ 84 (885)
T KOG2023|consen 9 EQGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFP---DFNNYLIYILIRA-KSEDVPTRSLAGLLLKNNVRGHYNSIP 84 (885)
T ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccc---chhceeeEEEecc-cccchhHHHHhhhhHhccccccccCCC
Confidence 345667788888888999999999999998765521 2222222222222 344555677776666553221 1 12
Q ss_pred HHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh---
Q 010290 120 QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--- 196 (513)
Q Consensus 120 ~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--- 196 (513)
.....++-.-+..-..|.++-+|.....++..++...+-..+++++|.+.+++..++....+.+..+|.++++....
T Consensus 85 ~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~ld 164 (885)
T KOG2023|consen 85 SEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLD 164 (885)
T ss_pred hHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHh
Confidence 34444555555556678888999999999999999988889999999999999999999999999999999875432
Q ss_pred ----hhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChh--hhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 010290 197 ----AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (513)
Q Consensus 197 ----~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 270 (513)
....+.++|-+.++.+++++.+|..|+.|+..+...-+.. ...+.++..+..+.+|+++.||+.++.++..+.+
T Consensus 165 s~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Lle 244 (885)
T KOG2023|consen 165 SDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLE 244 (885)
T ss_pred hhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 2345678999999999999999999999999887654443 2244577778888899999999999999999988
Q ss_pred HhCCCc--cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH----HHHHhhhhhhhhhc----------C-----
Q 010290 271 AVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQHILPCVKELS----------S----- 329 (513)
Q Consensus 271 ~~~~~~--~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~~----------~----- 329 (513)
...+.. ....++.+.++..+|.+.+|...|++.+..+++.--.. .+...++|.+..-+ +
T Consensus 245 vr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD 324 (885)
T KOG2023|consen 245 VRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEED 324 (885)
T ss_pred hcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCcccc
Confidence 765543 24578888888999999999999999998888753222 34455566554211 1
Q ss_pred -------------------------------C----------CcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcC
Q 010290 330 -------------------------------D----------SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK 368 (513)
Q Consensus 330 -------------------------------d----------~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 368 (513)
| .+|..|...+.++..++..+|.+. .+.++|.+.+.|.
T Consensus 325 ~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~el-L~~l~PlLk~~L~ 403 (885)
T KOG2023|consen 325 ESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDEL-LPILLPLLKEHLS 403 (885)
T ss_pred ccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHH-HHHHHHHHHHHcC
Confidence 0 139999999999999999888774 5788999999999
Q ss_pred CCChHHHHHHHHHHHHhhhhhhh--hhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChh---hHHHHHHHHHHH
Q 010290 369 DEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQ 443 (513)
Q Consensus 369 d~~~~vr~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~~~~~l~~ 443 (513)
.+.+.||++++-++|.|++..-. -...+.++|.+..++.|+..-||...|+.+++.+...-.+ .+...++..+++
T Consensus 404 ~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~ 483 (885)
T KOG2023|consen 404 SEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLR 483 (885)
T ss_pred cchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHH
Confidence 99999999999999999886422 2234679999999999999999999999999988764332 233335555666
Q ss_pred HhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhhcC-----cchHHHHHH
Q 010290 444 WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKSS-----RNLVLNSVL 495 (513)
Q Consensus 444 ~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~~-----~~~~~r~~~ 495 (513)
.+-|.+..|+++|+.+++.+-+.-|++ ++|.|...++. ..|++|..+
T Consensus 484 ~llD~NK~VQEAAcsAfAtleE~A~~e-----LVp~l~~IL~~l~~af~kYQ~KNLl 535 (885)
T KOG2023|consen 484 RLLDSNKKVQEAACSAFATLEEEAGEE-----LVPYLEYILDQLVFAFGKYQKKNLL 535 (885)
T ss_pred HHhcccHHHHHHHHHHHHHHHHhccch-----hHHHHHHHHHHHHHHHHHHhhccee
Confidence 777999999999999999998877764 44444443333 257777443
No 8
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.92 E-value=2.6e-21 Score=182.64 Aligned_cols=454 Identities=19% Similarity=0.261 Sum_probs=325.5
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh--ccCCch-HHHHHHHHHhhcccccccCchhhhhh
Q 010290 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE--NNDDDD-EVLLAMAEELGVFIPYVGGLEYANVL 87 (513)
Q Consensus 11 i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~--~~~~~~-~vr~~~~~~l~~~~~~~~~~~~~~~l 87 (513)
|..++-+.++..+..|+.+++.|..-+..+|+.-..+.++|.+++ +.|... -+-+..-+.|..+-... ..+.+.|
T Consensus 365 i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlv--rpYVhkI 442 (1172)
T KOG0213|consen 365 IMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLV--RPYVHKI 442 (1172)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccc--hhceeee
Confidence 677788889999999999999999999999999999999999998 333221 13333344444333211 1112222
Q ss_pred hHHHHHh-----------------------------------hccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHH
Q 010290 88 LPPLETL-----------------------------------CTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKR 132 (513)
Q Consensus 88 ~~~l~~l-----------------------------------~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ 132 (513)
+-.+..+ ..+.++.||.....+++.+++.+.- +.++|++..
T Consensus 443 LvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasalgi----p~llpfLka 518 (1172)
T KOG0213|consen 443 LVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASALGI----PALLPFLKA 518 (1172)
T ss_pred EEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhCc----HHHHHHHHH
Confidence 2111122 2344666777777777777776653 457899999
Q ss_pred hhcCC-CcchhhhHHhhhHhhcCCCCHH---HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh---hhhHH----
Q 010290 133 LAAGE-WFTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKS---- 201 (513)
Q Consensus 133 l~~d~-~~~~R~~~~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~---- 201 (513)
.+.+. +|..|..++.+...++...|-. +...++..+.+++.|.+..||.-.+.++..+++..+| +.+-+
T Consensus 519 vc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkp 598 (1172)
T KOG0213|consen 519 VCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKP 598 (1172)
T ss_pred HhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 88876 9999999999998887666555 7788899999999999999999999999999987654 11111
Q ss_pred -------------------------------------HHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhh--hhhhH
Q 010290 202 -------------------------------------EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD--CVAHI 242 (513)
Q Consensus 202 -------------------------------------~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l 242 (513)
.++-++.+-.+.++++.++..++.+...+..-|-+. ...++
T Consensus 599 Lwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~di 678 (1172)
T KOG0213|consen 599 LWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDI 678 (1172)
T ss_pred HHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhh
Confidence 111122222345666777777777776665543211 01112
Q ss_pred HH---------------------------------------HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccc----c
Q 010290 243 LP---------------------------------------VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR----S 279 (513)
Q Consensus 243 ~~---------------------------------------~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~----~ 279 (513)
+| -+..-+.|+.+..|...+.+..++...+|...+. +
T Consensus 679 lp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE 758 (1172)
T KOG0213|consen 679 LPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEE 758 (1172)
T ss_pred hHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHH
Confidence 22 2233345777888999999999988888765443 3
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhCh--HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchh---hCHHH
Q 010290 280 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI---LGKDA 354 (513)
Q Consensus 280 ~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~---~~~~~ 354 (513)
.++..++..+++++.+.. ..+..++.++..++. ..+.+.++..+...++++++.+|..++..++.++.. ++.+.
T Consensus 759 ~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~ 837 (1172)
T KOG0213|consen 759 RLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEK 837 (1172)
T ss_pred HHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHH
Confidence 566677777766554433 456677888877776 466778888888999999999999999999888754 45666
Q ss_pred HHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhh---hhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChh
Q 010290 355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431 (513)
Q Consensus 355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~---~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~ 431 (513)
...++--++...|..+.++|--..+.++..|+...|-.++ ...++|.+..++++....+...++..++.++....+.
T Consensus 838 ~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~ 917 (1172)
T KOG0213|consen 838 LMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEY 917 (1172)
T ss_pred HHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCccc
Confidence 6778888899999999999999999999999998876553 3588999999999999999999999999998764332
Q ss_pred hHHHHHHHHH---HHHhcCchhHHHHHHHHHHHHHHHHhChhh
Q 010290 432 FFDDKLGALC---MQWLKDKVYSIRDAAANNVKRLAEEFGPDW 471 (513)
Q Consensus 432 ~~~~~~~~~l---~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~ 471 (513)
.-....+.++ +.+|..-+.++|.+|.+++|.|++.+|++.
T Consensus 918 v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqd 960 (1172)
T KOG0213|consen 918 VSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQD 960 (1172)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHH
Confidence 2223344444 446677889999999999999999999964
No 9
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.91 E-value=3.1e-20 Score=175.39 Aligned_cols=482 Identities=15% Similarity=0.166 Sum_probs=344.6
Q ss_pred HHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCC-chHHHHHHHHHhhcccccccCc--hhhhhhhHHH
Q 010290 16 DELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD-DDEVLLAMAEELGVFIPYVGGL--EYANVLLPPL 91 (513)
Q Consensus 16 ~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~-~~~vr~~~~~~l~~~~~~~~~~--~~~~~l~~~l 91 (513)
..+.+.|+.+|....++++.+++++|- ++|+|++.. |.+. ..+-|....++..+++-..|.. .+...++.++
T Consensus 483 pDidn~deYVRnttarafavvasalgi----p~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii 558 (1172)
T KOG0213|consen 483 PDIDNKDEYVRNTTARAFAVVASALGI----PALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKII 558 (1172)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHhCc----HHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHH
Confidence 345678999999999999999998875 478999998 7775 7778888887777777766653 4566788888
Q ss_pred HHhhccchhHHHHHHHHHHHHHHhhcCh---HHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH----HHHHH
Q 010290 92 ETLCTVEETCVRDKAVESLCRIGSQMRE---QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA----LKTEL 164 (513)
Q Consensus 92 ~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~----~~~~l 164 (513)
...+.|++..||..++.+++.+++...+ +.+.+.+-|+-.....+.. ..-.+...+++.++.....+ +..++
T Consensus 559 ~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrg-k~laafLkAigyliplmd~eya~yyTrev 637 (1172)
T KOG0213|consen 559 EHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRG-KELAAFLKAIGYLIPLMDAEYASYYTREV 637 (1172)
T ss_pred HHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccC-hHHHHHHHHHhhccccccHHHHHHhHHHH
Confidence 9999999999999999999999988766 4444455565555433321 11223344556666666665 33455
Q ss_pred HHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhh--hhHHH---------------------------------------H
Q 010290 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA--HLKSE---------------------------------------I 203 (513)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~---------------------------------------l 203 (513)
+-.+..-.+.|+.+.++.+.+.+...+...|-+ ..... +
T Consensus 638 mlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~ 717 (1172)
T KOG0213|consen 638 MLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPI 717 (1172)
T ss_pred HHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHH
Confidence 555666667788888888888777777654421 11111 1
Q ss_pred HHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhh----hhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--Ccc
Q 010290 204 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCV----AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPT 277 (513)
Q Consensus 204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~----~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~ 277 (513)
+.-+..-+.|+.+..|...+++...+...+|..++. ..++..+...+++.+.... ..+..++.+.+.+|. ..+
T Consensus 718 v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpy 796 (1172)
T KOG0213|consen 718 VSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPY 796 (1172)
T ss_pred HHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccc
Confidence 222222345788889999999999888887754332 3345555555544332222 345678888888887 566
Q ss_pred ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhh---hChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHH
Q 010290 278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI---LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA 354 (513)
Q Consensus 278 ~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 354 (513)
.+++...++..|++..+.||..|+..++.+... ++.+.....+--.+...+....+.|--.++.++..+....|...
T Consensus 797 lpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 797 LPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccc
Confidence 788899999999999999999999988877654 45555555665566677778888888888888877776665432
Q ss_pred H---HHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhh----hhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 010290 355 T---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV----IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (513)
Q Consensus 355 ~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~----~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~ 427 (513)
. ...++|.+...|++....|..+++..++.|+.. ++...+ -.|.-.|.++++.-+..+|.++...++.+++.
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREW-MRIcfeLlelLkahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREW-MRICFELLELLKAHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 2 356888888888888888999998888888753 333333 23455566677777888888898888888888
Q ss_pred hChhhHH-------------------------------HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh--Hhh
Q 010290 428 LGVGFFD-------------------------------DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQ 474 (513)
Q Consensus 428 ~~~~~~~-------------------------------~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~ 474 (513)
+|+.... =.++|.++.--.-|+.+|++..++++..+++..|+.- ..-
T Consensus 956 IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiy 1035 (1172)
T KOG0213|consen 956 IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIY 1035 (1172)
T ss_pred cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHH
Confidence 7775211 1278888888888999999999999999999888632 235
Q ss_pred hhHHHHHhhhcCcchHHHHH-HHHHHHhccc
Q 010290 475 HIVPQVALIKSSRNLVLNSV-LSLLKNAGID 504 (513)
Q Consensus 475 ~i~~~L~~~~~~~~~~~r~~-~~~~~~i~~~ 504 (513)
.+.|.|.+.+.|.+.+||++ .++++-++..
T Consensus 1036 av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1036 AVTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred HhhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence 78999999999999999955 4666665543
No 10
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.89 E-value=2.5e-20 Score=172.69 Aligned_cols=479 Identities=16% Similarity=0.180 Sum_probs=295.0
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh--ccCCch-HHHHHHHHHhhcccccccCchhhhhh
Q 010290 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE--NNDDDD-EVLLAMAEELGVFIPYVGGLEYANVL 87 (513)
Q Consensus 11 i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~--~~~~~~-~vr~~~~~~l~~~~~~~~~~~~~~~l 87 (513)
+..++-+.++..+..|..+++.|..-+..+|++-..+.++|.+.+ +.|... -+-+..-+.|..+-... ..+.+.+
T Consensus 170 v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~--~pyvhkI 247 (975)
T COG5181 170 VYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLK--VPYVHKI 247 (975)
T ss_pred HHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhccccc--ccceeeE
Confidence 455677788999999999999999999999999999999999988 433221 23334444444333211 1111111
Q ss_pred -----------------------hHHH------------HHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHH
Q 010290 88 -----------------------LPPL------------ETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKR 132 (513)
Q Consensus 88 -----------------------~~~l------------~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ 132 (513)
.++. .--..+.++.||.....+.+.+++.+.- +.++|++..
T Consensus 248 LvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv----~~llpfl~a 323 (975)
T COG5181 248 LVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGV----EELLPFLEA 323 (975)
T ss_pred EEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCc----HHHHHHHHH
Confidence 1111 1112455777888888888888877763 457899998
Q ss_pred hhcCC-CcchhhhHHhhhHhhcCCCCHH---HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh---hhhHH----
Q 010290 133 LAAGE-WFTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKS---- 201 (513)
Q Consensus 133 l~~d~-~~~~R~~~~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~---- 201 (513)
++.+. +|..|..++++...++...|-. +...++..+.+++.|.+..||..++.++..+++..+| +.+..
T Consensus 324 ~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~p 403 (975)
T COG5181 324 LCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCP 403 (975)
T ss_pred HhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHH
Confidence 88775 8999999999999888777665 7788899999999999999999999999998887655 11100
Q ss_pred -------------------------------------HHHHHHHHhh---------------------------------
Q 010290 202 -------------------------------------EIMSIFEELT--------------------------------- 211 (513)
Q Consensus 202 -------------------------------------~l~~~l~~l~--------------------------------- 211 (513)
....++...+
T Consensus 404 Lw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v 483 (975)
T COG5181 404 LWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQV 483 (975)
T ss_pred HHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhh
Confidence 0111111111
Q ss_pred -----------------------------------------------hccchhHHHHHHHHHHHhhccCChh--------
Q 010290 212 -----------------------------------------------QDDQDSVRLLAVEGCGALGKLLEPQ-------- 236 (513)
Q Consensus 212 -----------------------------------------------~d~~~~vr~~a~~~l~~l~~~~~~~-------- 236 (513)
+|+.+..|..++.+...+...+|..
T Consensus 484 ~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErlee 563 (975)
T COG5181 484 SPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEE 563 (975)
T ss_pred cHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHH
Confidence 1222222222222222222211110
Q ss_pred ------------------------------------hhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH---hCCCcc
Q 010290 237 ------------------------------------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA---VGPEPT 277 (513)
Q Consensus 237 ------------------------------------~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~---~~~~~~ 277 (513)
.+.+.++..+...+.++.+.+|.-++...+.++.. +|+...
T Consensus 564 rl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~ 643 (975)
T COG5181 564 RLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKE 643 (975)
T ss_pred HHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHH
Confidence 00011222233334444444444444433333322 222222
Q ss_pred ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH---HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHH
Q 010290 278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA 354 (513)
Q Consensus 278 ~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 354 (513)
..++--++...+....++|--..+.++..+....+-. .-...++|.+...+.+....|....+..++.++...+...
T Consensus 644 l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi 723 (975)
T COG5181 644 LAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYI 723 (975)
T ss_pred HHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccC
Confidence 2233333344444444444444444443333322211 0123455666666666777777777777777775443322
Q ss_pred HHHhHHHH---HHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChh
Q 010290 355 TIEQLLPI---FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431 (513)
Q Consensus 355 ~~~~l~~~---l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~ 431 (513)
-....+.+ +.+.|+..+.++|.+|..++|.|.+.+|+ +.++..+.+.++......|....-+++-+++.+|+-
T Consensus 724 ~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP----qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf 799 (975)
T COG5181 724 GVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP----QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF 799 (975)
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH----HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch
Confidence 22233333 34556777788888888888888888887 445666666666667777777777777777777763
Q ss_pred hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhH--hhhhHHHHHhhhcCcchHHHHH-HHHHHHhcc
Q 010290 432 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVALIKSSRNLVLNSV-LSLLKNAGI 503 (513)
Q Consensus 432 ~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~--~~~i~~~L~~~~~~~~~~~r~~-~~~~~~i~~ 503 (513)
.++|.++.--..|+.+|++..++++..+++..|..-. .-.+.|.|.+.+.|.+.+||++ .+.++-++.
T Consensus 800 ----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~L 870 (975)
T COG5181 800 ----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVL 870 (975)
T ss_pred ----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhc
Confidence 3789999888999999999999999999999886422 3678999999999999999955 466665554
No 11
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.88 E-value=2.5e-18 Score=158.32 Aligned_cols=495 Identities=14% Similarity=0.115 Sum_probs=324.4
Q ss_pred HHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchH-HHHHHHHHhhcccccccCchh---hhhh-h
Q 010290 15 IDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDE-VLLAMAEELGVFIPYVGGLEY---ANVL-L 88 (513)
Q Consensus 15 ~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~-vr~~~~~~l~~~~~~~~~~~~---~~~l-~ 88 (513)
+..|++..+..-.+|...+.+|+..--|...+++++..+.. ..++.|. +++.+...+|..+.....+.. .+.+ +
T Consensus 100 l~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~ 179 (858)
T COG5215 100 LRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILF 179 (858)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHH
Confidence 34566777777777777777777666666666666666665 5554443 566666666666654333211 1112 2
Q ss_pred HHHHH-hhccchhHHHHHHHHHHHHHH----hhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhh----cCCCCHH
Q 010290 89 PPLET-LCTVEETCVRDKAVESLCRIG----SQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVA----YPSAPEA 159 (513)
Q Consensus 89 ~~l~~-l~~~~~~~vR~~a~~~l~~l~----~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~----~~~~~~~ 159 (513)
.+..- +-+.++..||-.|+.+|..-+ ..+..+.-..+++..+....+.++..+..++..++..+ +++....
T Consensus 180 aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~y 259 (858)
T COG5215 180 AIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSY 259 (858)
T ss_pred HHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 234556677777777766522 22333444556777776666777777777777666544 2444433
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh-----h--------------hhHHHHHHHHHHhhh-------c
Q 010290 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-----A--------------HLKSEIMSIFEELTQ-------D 213 (513)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-----~--------------~~~~~l~~~l~~l~~-------d 213 (513)
..+-+.......+++++.+|...+.+.-..++..--+ . .....++|.+.+++. +
T Consensus 260 mE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~ 339 (858)
T COG5215 260 MENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYG 339 (858)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 4455556666677888888888877776666542110 0 112457888887764 3
Q ss_pred cchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcC
Q 010290 214 DQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRSDVVPAYVRLLR 290 (513)
Q Consensus 214 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~ll~~l~~~l~ 290 (513)
++|.+-.+|..||.-+++..++.- ...++.++.+.+..++|.-|.+++.++|.+.+.-... .+.++.+|.+...+.
T Consensus 340 DdWn~smaA~sCLqlfaq~~gd~i-~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~ 418 (858)
T COG5215 340 DDWNPSMAASSCLQLFAQLKGDKI-MRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMS 418 (858)
T ss_pred cccchhhhHHHHHHHHHHHhhhHh-HHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcc
Confidence 467899999999998888877654 4448888999999999999999999999988643322 224678899999999
Q ss_pred CCcHHHHHHHHHhHHHHHhhhCh----H-----------------------------------------------HHHHh
Q 010290 291 DNEAEVRIAAAGKVTKICRILNP----E-----------------------------------------------LAIQH 319 (513)
Q Consensus 291 d~~~~vr~~a~~~l~~~~~~~~~----~-----------------------------------------------~~~~~ 319 (513)
|+.-.|+..++++++.+..++.. . .+...
T Consensus 419 D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~a 498 (858)
T COG5215 419 DSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLA 498 (858)
T ss_pred cceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHH
Confidence 99989999999999998775421 0 00011
Q ss_pred hhhhhhhh--cCCCcHHHHHHHHHHHHHhchhhCHHHHH------HhHH-------HHHHHhcCCC----ChHHHHHHHH
Q 010290 320 ILPCVKEL--SSDSSQHVRSALATVIMGMAPILGKDATI------EQLL-------PIFLSLLKDE----FPDVRLNIIS 380 (513)
Q Consensus 320 l~~~l~~~--~~d~~~~vr~~~~~~l~~l~~~~~~~~~~------~~l~-------~~l~~~l~d~----~~~vr~~a~~ 380 (513)
++..+... ..+.+...|.+...+++.+...++..... +.+. .+..+.+.-+ ..+++.+.+.
T Consensus 499 i~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~ 578 (858)
T COG5215 499 ILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIG 578 (858)
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 11111111 12455677777888887777655443211 1111 1111112111 2467777777
Q ss_pred HHHHhhhhhhh--hhhhhhHHHHHHHhhcCCC-hhHHHHHHHHHHHHHHHhChhh--HHHHHHHHHHHHhcCchhHHHHH
Q 010290 381 KLDQVNQVIGI--DLLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDA 455 (513)
Q Consensus 381 ~l~~i~~~~~~--~~~~~~l~~~l~~l~~~~~-~~vR~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~VR~~ 455 (513)
.|..++...+. +...+.++..+.+++++.+ ..+-.-...+++.+...+++.+ +.+.++|++.+.++..+..|-..
T Consensus 579 vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~ 658 (858)
T COG5215 579 VLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNS 658 (858)
T ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHH
Confidence 78887777665 5566789999999888764 3455566778888888777754 56789999999999999999999
Q ss_pred HHHHHHHHHHHhChhhH--hhhhHHHHHhhhcCcch---HHHHHHHHHHH----hcccceeehh
Q 010290 456 AANNVKRLAEEFGPDWA--MQHIVPQVALIKSSRNL---VLNSVLSLLKN----AGIDAVFYME 510 (513)
Q Consensus 456 a~~~l~~l~~~~~~~~~--~~~i~~~L~~~~~~~~~---~~r~~~~~~~~----i~~~~~~~~~ 510 (513)
|+..+|++++.+|.++. .+.+...|.+.++++.. +.-.+++++++ ||.+|.+|+.
T Consensus 659 avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~ 722 (858)
T COG5215 659 AVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLD 722 (858)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999876 38888999998888632 22266766665 5678888864
No 12
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.7e-18 Score=162.42 Aligned_cols=473 Identities=15% Similarity=0.198 Sum_probs=343.2
Q ss_pred HHHHHHHhcCc--cHHHHHHHhhcHHHHHH----HhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccC---
Q 010290 11 IAVLIDELKND--DIQLRLNSIRRLSTIAR----ALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG--- 80 (513)
Q Consensus 11 i~~l~~~l~~~--d~~~r~~a~~~l~~i~~----~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~--- 80 (513)
+..++.++.++ +..+|..|.++|..-.. .+..+.-++.++..+.+ .+.++.+++.++..+|.++...--.
T Consensus 174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~ 253 (859)
T KOG1241|consen 174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFME 253 (859)
T ss_pred HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777765 45799999999865542 34445557778888888 7788999999999999877653210
Q ss_pred chhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhh-cC--------------h------HHHHhhHHHHHHHhh-c---
Q 010290 81 LEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQ-MR--------------E------QDVVEHFIPLVKRLA-A--- 135 (513)
Q Consensus 81 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~-~~--------------~------~~~~~~~~~~l~~l~-~--- 135 (513)
....+.++++-..-..++++.|.-.+++-.+.++.. ++ + .+-...+.|.+.++. +
T Consensus 254 ~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde 333 (859)
T KOG1241|consen 254 PYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDE 333 (859)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCC
Confidence 112233444444444678899999999998877753 21 1 011235777776543 2
Q ss_pred ---CCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhh---hhHHHHHHHHHH
Q 010290 136 ---GEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA---HLKSEIMSIFEE 209 (513)
Q Consensus 136 ---d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~ 209 (513)
+++|..-.+|..++..+.+.++++..+.+++++.+-++.++|+-|.+++-++|.+...-.+. ......+|.+..
T Consensus 334 ~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~ 413 (859)
T KOG1241|consen 334 DDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIIN 413 (859)
T ss_pred CcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHH
Confidence 35599999999999999999999999999999999999999999999999999887643332 245567888889
Q ss_pred hhhccchhHHHHHHHHHHHhhccCCh----hhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC----C----cc
Q 010290 210 LTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----E----PT 277 (513)
Q Consensus 210 l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----~----~~ 277 (513)
+..|+.-.||..+..+++++++.++. +...+.+++.+...++| .|+|-..+++++..+++...+ . ..
T Consensus 414 lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~ 492 (859)
T KOG1241|consen 414 LMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPA 492 (859)
T ss_pred HhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence 99999999999999999999998764 33444566667777765 577888999999999875532 1 11
Q ss_pred ccchHHHHHHhcC-----C-CcHHHHHHHHHhHHHHHhhhChHH--HHHhhhhhhh----hhcC-------C--CcHHHH
Q 010290 278 RSDVVPAYVRLLR-----D-NEAEVRIAAAGKVTKICRILNPEL--AIQHILPCVK----ELSS-------D--SSQHVR 336 (513)
Q Consensus 278 ~~~ll~~l~~~l~-----d-~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~----~~~~-------d--~~~~vr 336 (513)
.+.+.+++-.+++ | ++...|.+|..+|+.+++....+. ....+.+.+. +.++ | +--.+.
T Consensus 493 t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQ 572 (859)
T KOG1241|consen 493 TPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQ 572 (859)
T ss_pred chhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHH
Confidence 1233333333432 2 557899999999999999765441 1112222221 1111 1 112456
Q ss_pred HHHHHHHHHhchhhCHHH--HHHhHHHHHHHhcCC-CChHHHHHHHHHHHHhhhhhhhhh--hhhhHHHHHHHhh-cCCC
Q 010290 337 SALATVIMGMAPILGKDA--TIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELA-EDRH 410 (513)
Q Consensus 337 ~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~i~~~~~~~~--~~~~l~~~l~~l~-~~~~ 410 (513)
...+.+|+.+...++.+. ..+.++..+++.++. +...|...|+.+++.+++.+|... +.+.+.|.+..-+ +-.+
T Consensus 573 s~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e 652 (859)
T KOG1241|consen 573 SLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQE 652 (859)
T ss_pred HHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchH
Confidence 677888888888777643 347899999999988 456688889999999999988764 5577788887766 4557
Q ss_pred hhHHHHHHHHHHHHHHHhChhh--HHHHHHHHHHHHhcCch--hHHHHHHHHHHHHHHHHhChhhHh--hhhHHHHHhhh
Q 010290 411 WRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKV--YSIRDAAANNVKRLAEEFGPDWAM--QHIVPQVALIK 484 (513)
Q Consensus 411 ~~vR~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~--~~VR~~a~~~l~~l~~~~~~~~~~--~~i~~~L~~~~ 484 (513)
+.|=.+++..++.++..++.++ |.+.++..+++.|+.+. .+|+-..+.++|+|+.++|.+|.. +.++|.|....
T Consensus 653 ~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as 732 (859)
T KOG1241|consen 653 YQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQAS 732 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 8888899999999999988875 55778888899888775 579999999999999999998763 77777777654
No 13
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.86 E-value=9.6e-19 Score=176.48 Aligned_cols=462 Identities=18% Similarity=0.151 Sum_probs=312.5
Q ss_pred CcHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhh
Q 010290 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVL 87 (513)
Q Consensus 9 ~~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l 87 (513)
..+..+++.+.++|...|.-+.-.+..+... .++ ...-.+..+.+ +.++++.+|..|.+.++.+. ..+..+.+
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~-~~~-~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~~~~l 115 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHE-DPE-LLILIINSLQKDLNSPNPYIRGLALRTLSNIR----TPEMAEPL 115 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTT-SHH-HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-----SHHHHHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc-chh-HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc----ccchhhHH
Confidence 3456677777788888777776666655321 122 22234455555 77888888888888888765 35667778
Q ss_pred hHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCH---HHHHHH
Q 010290 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE---ALKTEL 164 (513)
Q Consensus 88 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~---~~~~~l 164 (513)
.+.+..++.|+++.||..|+.++..+.+..+. .+...+.+.+.++..|+++.++.+|+.++..+ +.-++ .....+
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~-~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~ 193 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPD-LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKL 193 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC-CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCHH-HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHH
Confidence 88888888888888888888888888877433 33332677787777888888888888888877 22222 256777
Q ss_pred HHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHH
Q 010290 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244 (513)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 244 (513)
...+.+++.++++.++..+.+.+..++..-........+++.+..++++.++.|...++.++..+... ......+.+
T Consensus 194 ~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~---~~~~~~~~~ 270 (526)
T PF01602_consen 194 IRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS---PELLQKAIN 270 (526)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---HHHHHHHHH
T ss_pred HHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc---hHHHHhhHH
Confidence 78888877888888888888888887764433221145667777777777778877777777755543 235667788
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhh
Q 010290 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCV 324 (513)
Q Consensus 245 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l 324 (513)
.+..++.++++.+|..++..+..++....... ......+..+..+++..||..++..+..++..-. ...+++.+
T Consensus 271 ~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v--~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n----~~~Il~eL 344 (526)
T PF01602_consen 271 PLIKLLSSSDPNVRYIALDSLSQLAQSNPPAV--FNQSLILFFLLYDDDPSIRKKALDLLYKLANESN----VKEILDEL 344 (526)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHH--GTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH----HHHHHHHH
T ss_pred HHHHHhhcccchhehhHHHHHHHhhcccchhh--hhhhhhhheecCCCChhHHHHHHHHHhhcccccc----hhhHHHHH
Confidence 88888888888888888888888876531111 1222333444457778888888887777765322 24455555
Q ss_pred hhhcCC-CcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Q 010290 325 KELSSD-SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 403 (513)
Q Consensus 325 ~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~ 403 (513)
...+.+ .+..+|..++..++.++..+... .+.+++.+.+++......+...++..+..+....... ...++..+.
T Consensus 345 ~~~l~~~~d~~~~~~~i~~I~~la~~~~~~--~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~--~~~~l~~L~ 420 (526)
T PF01602_consen 345 LKYLSELSDPDFRRELIKAIGDLAEKFPPD--AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL--REKILKKLI 420 (526)
T ss_dssp HHHHHHC--HHHHHHHHHHHHHHHHHHGSS--HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT--HHHHHHHHH
T ss_pred HHHHHhccchhhhhhHHHHHHHHHhccCch--HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhh--hHHHHHHHH
Confidence 555533 36678888888888888777443 3456777788887777777777777777776654332 244566666
Q ss_pred HhhcC-CChhHHHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHH
Q 010290 404 ELAED-RHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVA 481 (513)
Q Consensus 404 ~l~~~-~~~~vR~~~~~~l~~l~~~~~~-~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~ 481 (513)
+.+.+ .+..++..+++.+|..+...+. + ....++..+.....+..+.||...+.++.++....+.....+.+...+.
T Consensus 421 ~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~ 499 (526)
T PF01602_consen 421 ELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLL 499 (526)
T ss_dssp HHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHH
Confidence 66554 5667888888888888887765 3 4556777777877777888888888888888888775545567777777
Q ss_pred hhhc--CcchHHH
Q 010290 482 LIKS--SRNLVLN 492 (513)
Q Consensus 482 ~~~~--~~~~~~r 492 (513)
.+.+ +.++-.|
T Consensus 500 ~~~~~~s~~~evr 512 (526)
T PF01602_consen 500 SLATEDSSDPEVR 512 (526)
T ss_dssp CHHHHS-SSHHHH
T ss_pred HHhccCCCCHHHH
Confidence 7777 5555443
No 14
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.86 E-value=5.7e-18 Score=182.12 Aligned_cols=485 Identities=13% Similarity=0.108 Sum_probs=333.3
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhC-h-Hh-hhhhhhhhhhh-ccC-CchHHHHHHHHHhhcccccccCchh-
Q 010290 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALG-E-ER-TRKELIPFLSE-NND-DDDEVLLAMAEELGVFIPYVGGLEY- 83 (513)
Q Consensus 10 ~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~-~-~~-~~~~l~~~l~~-~~~-~~~~vr~~~~~~l~~~~~~~~~~~~- 83 (513)
.++.+++.|+++++..+..|+..+..++...+ + +. .....+|.+.+ +.+ +++.+|..++.+|+.++... .+.
T Consensus 190 aVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s--~e~r 267 (2102)
T PLN03200 190 GVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQS--KEAK 267 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCC--HHHH
Confidence 47788899999999999999988877764322 1 11 23456788888 554 45689999999999998732 221
Q ss_pred ----hhhhhHHHHHhhccch---------hHHHHHHHHHHHHHHhhcCh-----------H-HHH---h--hHHHHHHHh
Q 010290 84 ----ANVLLPPLETLCTVEE---------TCVRDKAVESLCRIGSQMRE-----------Q-DVV---E--HFIPLVKRL 133 (513)
Q Consensus 84 ----~~~l~~~l~~l~~~~~---------~~vR~~a~~~l~~l~~~~~~-----------~-~~~---~--~~~~~l~~l 133 (513)
....+|.|..++..++ ...++.|+.++++++....+ . +.. . -.++++...
T Consensus 268 ~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l 347 (2102)
T PLN03200 268 QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMV 347 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence 1233555555554333 34588899999998874321 0 000 0 011122222
Q ss_pred hcCCCcchhh----hHHhhhHhhcCCCCHH-----------------------HHHHHHHHHHHHcCCCchHHHHHHHHh
Q 010290 134 AAGEWFTARV----SSCGLFHVAYPSAPEA-----------------------LKTELRTIYRQLCQDDMPMVRRSAATN 186 (513)
Q Consensus 134 ~~d~~~~~R~----~~~~~l~~~~~~~~~~-----------------------~~~~l~~~l~~l~~d~~~~vr~~a~~~ 186 (513)
.++++...+. .++..+..++++-.+. ...+..+.+..++...+..++..++.+
T Consensus 348 ~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~a 427 (2102)
T PLN03200 348 FDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRA 427 (2102)
T ss_pred cCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHH
Confidence 2222211111 1112233333222111 112334556667777778999999999
Q ss_pred HHHHHHHhhh---hhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhh---hhhhHHHHHHHhcCCCCHHHHHH
Q 010290 187 LGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD---CVAHILPVIVNFSQDKSWRVRYM 260 (513)
Q Consensus 187 l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~~~d~~~~vr~~ 260 (513)
|..++..-.. .......+|.|.+++.+++..++..|+..++.++..-.... .....+|.+.+++.+++..+|..
T Consensus 428 L~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqee 507 (2102)
T PLN03200 428 LSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKED 507 (2102)
T ss_pred HHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHH
Confidence 9988854211 12233468889999999999999999999999886433211 12348999999999999999999
Q ss_pred HHHHHHHHHHHhCCC----ccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHH
Q 010290 261 VANQLYELCEAVGPE----PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVR 336 (513)
Q Consensus 261 ~~~~l~~l~~~~~~~----~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr 336 (513)
+++++++++.. ..+ ......+|.+..++++.++.++..|+++|..+...-..+ .++.+..++..++..++
T Consensus 508 AawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-----~I~~Lv~LLlsdd~~~~ 581 (2102)
T PLN03200 508 SATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-----TISQLTALLLGDLPESK 581 (2102)
T ss_pred HHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-----HHHHHHHHhcCCChhHH
Confidence 99999999852 111 112357889999999999999999999999998754332 33556677778888888
Q ss_pred HHHHHHHHHhchhhCHHHH------HHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHhhc
Q 010290 337 SALATVIMGMAPILGKDAT------IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAE 407 (513)
Q Consensus 337 ~~~~~~l~~l~~~~~~~~~------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~ 407 (513)
..++..++.+......+.. ....+|.+.++++.++..++..|++++..++..-.. .......+|.+..++.
T Consensus 582 ~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLs 661 (2102)
T PLN03200 582 VHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLT 661 (2102)
T ss_pred HHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHh
Confidence 8899999888664444321 134789999999999999999999999999763221 2234577888889999
Q ss_pred CCChhHHHHHHHHHHHHHHHhChhh----HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh--hHhhhhHHHHH
Q 010290 408 DRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVA 481 (513)
Q Consensus 408 ~~~~~vR~~~~~~l~~l~~~~~~~~----~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~i~~~L~ 481 (513)
+.+..+|..++++++.+......+. .....+|.+..++++++..++..++.++..++..-... ......+|.|.
T Consensus 662 s~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv 741 (2102)
T PLN03200 662 NNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLT 741 (2102)
T ss_pred cCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHH
Confidence 9999999999999999986533322 22347899999999999999999999999999864322 22467789999
Q ss_pred hhhcCcchHHH-HHHHHHHHhc
Q 010290 482 LIKSSRNLVLN-SVLSLLKNAG 502 (513)
Q Consensus 482 ~~~~~~~~~~r-~~~~~~~~i~ 502 (513)
+++.+.+...| .++.++..++
T Consensus 742 ~lLr~G~~~~k~~Aa~AL~~L~ 763 (2102)
T PLN03200 742 RVLREGTLEGKRNAARALAQLL 763 (2102)
T ss_pred HHHHhCChHHHHHHHHHHHHHH
Confidence 99988765444 6666665555
No 15
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.86 E-value=3.1e-18 Score=172.78 Aligned_cols=464 Identities=17% Similarity=0.165 Sum_probs=343.3
Q ss_pred HHHhcCc--cHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhhHHH
Q 010290 15 IDELKND--DIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPL 91 (513)
Q Consensus 15 ~~~l~~~--d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l 91 (513)
.+.+.+. +...|..+++.+..+ ...|.+ ...+.+.+.+ +.+.+.+.|+.+--.+..+...- ++....+.+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~l~kli~~-~~~G~~--~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~~~~~l~~n~l 84 (526)
T PF01602_consen 10 AKILNSFKIDISKKKEALKKLIYL-MMLGYD--ISFLFMEVIKLISSKDLELKRLGYLYLSLYLHED--PELLILIINSL 84 (526)
T ss_dssp HHHHHCSSTHHHHHHHHHHHHHHH-HHTT-----GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS--HHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHH-HHcCCC--CchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc--hhHHHHHHHHH
Confidence 3334444 788888888887665 333433 2355555566 67889999999998888877632 23344566667
Q ss_pred HHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHH
Q 010290 92 ETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQL 171 (513)
Q Consensus 92 ~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l 171 (513)
.+-+.++++.+|..|+++++.++ ...+.+.+.|.+.++..|+++.+|..|+.++..+++..++.....+.+.+.++
T Consensus 85 ~kdl~~~n~~~~~lAL~~l~~i~----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~l 160 (526)
T PF01602_consen 85 QKDLNSPNPYIRGLALRTLSNIR----TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQL 160 (526)
T ss_dssp HHHHCSSSHHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHH
T ss_pred HHhhcCCCHHHHHHHHhhhhhhc----ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhh
Confidence 67678899999999999999987 34556778999999999999999999999999998775554332289999999
Q ss_pred cCCCchHHHHHHHHhHHHHHHHhhhh--hhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHh
Q 010290 172 CQDDMPMVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNF 249 (513)
Q Consensus 172 ~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 249 (513)
+.|+++.|+.+|+..+..+ +.-++. ...+.+++.+.+++.+.++..+...++.+..++...........+++.+...
T Consensus 161 L~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~ 239 (526)
T PF01602_consen 161 LSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNL 239 (526)
T ss_dssp TTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHH
T ss_pred ccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHH
Confidence 9999999999999999999 322222 5678888999999999999999999999999988766543225678888888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcC
Q 010290 250 SQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSS 329 (513)
Q Consensus 250 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 329 (513)
+++.++.|..+++.++..+.. ........++.+..++.++++.+|..++.++..++... +..+ ......+..+..
T Consensus 240 l~s~~~~V~~e~~~~i~~l~~---~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-~~~v-~~~~~~~~~l~~ 314 (526)
T PF01602_consen 240 LQSSSPSVVYEAIRLIIKLSP---SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-PPAV-FNQSLILFFLLY 314 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS---SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-HHHH-GTHHHHHHHHHC
T ss_pred hhccccHHHHHHHHHHHHhhc---chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc-chhh-hhhhhhhheecC
Confidence 878888899888888876543 22246788999999999999999999999999998764 2222 122222333445
Q ss_pred CCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCC-ChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcC
Q 010290 330 DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 408 (513)
Q Consensus 330 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~ 408 (513)
+++..+|..++..+..++..-. ...+++.+.+.+.+. +..+|..++..++.++...... .+..++.+.+++..
T Consensus 315 ~~d~~Ir~~~l~lL~~l~~~~n----~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~--~~~~v~~l~~ll~~ 388 (526)
T PF01602_consen 315 DDDPSIRKKALDLLYKLANESN----VKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD--AEWYVDTLLKLLEI 388 (526)
T ss_dssp SSSHHHHHHHHHHHHHH--HHH----HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS--HHHHHHHHHHHHHC
T ss_pred CCChhHHHHHHHHHhhcccccc----hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch--HHHHHHHHHHhhhh
Confidence 8889999999999998885433 445777777888544 7889999999999999877543 36788888888888
Q ss_pred CChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHHhCh-hhHhhhhHHHHHhhhcC
Q 010290 409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGP-DWAMQHIVPQVALIKSS 486 (513)
Q Consensus 409 ~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~-~~~~~~i~~~L~~~~~~ 486 (513)
.+..+...++..+..+....... ....+..+...+.+ ..+.++..+++.+|........ . ....++..+.+...+
T Consensus 389 ~~~~~~~~~~~~i~~ll~~~~~~--~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~~~ 465 (526)
T PF01602_consen 389 SGDYVSNEIINVIRDLLSNNPEL--REKILKKLIELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENFIE 465 (526)
T ss_dssp TGGGCHCHHHHHHHHHHHHSTTT--HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHHTT
T ss_pred ccccccchHHHHHHHHhhcChhh--hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhhcc
Confidence 87788888888888888764332 34467777777765 6788999999999999999886 3 345667777766555
Q ss_pred cchHHH-HHHHHHHHhc
Q 010290 487 RNLVLN-SVLSLLKNAG 502 (513)
Q Consensus 487 ~~~~~r-~~~~~~~~i~ 502 (513)
.+...+ .++.++.++.
T Consensus 466 ~~~~vk~~ilt~~~Kl~ 482 (526)
T PF01602_consen 466 ESPEVKLQILTALAKLF 482 (526)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 555444 5555555544
No 16
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.86 E-value=4.7e-18 Score=182.73 Aligned_cols=468 Identities=14% Similarity=0.118 Sum_probs=338.4
Q ss_pred HHHHHHHhcCcc---------HHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCC-chHHHHHHHHHhhccccccc
Q 010290 11 IAVLIDELKNDD---------IQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD-DDEVLLAMAEELGVFIPYVG 79 (513)
Q Consensus 11 i~~l~~~l~~~d---------~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~-~~~vr~~~~~~l~~~~~~~~ 79 (513)
++.+++.+.+++ ...+..|+++|..++... ..++|++.+ +.+. +..+...++..+..+...+.
T Consensus 276 Ip~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~------~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d 349 (2102)
T PLN03200 276 IPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM------SALILYLGELSESPRSPAPIADTLGALAYALMVFD 349 (2102)
T ss_pred HHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc------hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcC
Confidence 666777776544 334788999998887532 467888877 4333 34444444445544433333
Q ss_pred Cch-hh-----hhhhHHHHHhhccchhH-HHHHHHHHHHHHHhhcCh-HH-HHhhHHHHHHHhhcCCCcchhhhHHhhhH
Q 010290 80 GLE-YA-----NVLLPPLETLCTVEETC-VRDKAVESLCRIGSQMRE-QD-VVEHFIPLVKRLAAGEWFTARVSSCGLFH 150 (513)
Q Consensus 80 ~~~-~~-----~~l~~~l~~l~~~~~~~-vR~~a~~~l~~l~~~~~~-~~-~~~~~~~~l~~l~~d~~~~~R~~~~~~l~ 150 (513)
+.. .. ..+.+.|..++.++++. +...+..+|..+.....- .. ......+.+..+....+..++..++..+.
T Consensus 350 ~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~ 429 (2102)
T PLN03200 350 SSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALS 429 (2102)
T ss_pred CchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHH
Confidence 221 11 12346677788777655 467777777554333211 11 11234566777777777889999999999
Q ss_pred hhcCCCCHH----HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh---hhhHHHHHHHHHHhhhccchhHHHHHH
Q 010290 151 VAYPSAPEA----LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAV 223 (513)
Q Consensus 151 ~~~~~~~~~----~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~ 223 (513)
.++..-.+. .....++.+.+++.+++..+|+.++..++.++..-.. .......+|.|.+++..++..+|..|+
T Consensus 430 ~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAa 509 (2102)
T PLN03200 430 SLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSA 509 (2102)
T ss_pred HHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 888774443 2334689999999999999999999999999864322 122345789999999999999999999
Q ss_pred HHHHHhhccCCh-hhh--hhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHH
Q 010290 224 EGCGALGKLLEP-QDC--VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA 300 (513)
Q Consensus 224 ~~l~~l~~~~~~-~~~--~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a 300 (513)
.++++++..-.. ... ....+|.+.+++++.+++++..++.+|.++... + ....++.+..++...++.++..+
T Consensus 510 wAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~-~----d~~~I~~Lv~LLlsdd~~~~~~a 584 (2102)
T PLN03200 510 TVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT-A----DAATISQLTALLLGDLPESKVHV 584 (2102)
T ss_pred HHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-c----chhHHHHHHHHhcCCChhHHHHH
Confidence 999999874211 111 234788899999999999999999999999754 2 12355777788888888999999
Q ss_pred HHhHHHHHhhhChHHHH------HhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCH---HHHHHhHHHHHHHhcCCCC
Q 010290 301 AGKVTKICRILNPELAI------QHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEF 371 (513)
Q Consensus 301 ~~~l~~~~~~~~~~~~~------~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~ 371 (513)
+..++.+......+... ...+|.+..++++.+..++..++.++..++..-.. .......+|.+..+|.+.+
T Consensus 585 L~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~ 664 (2102)
T PLN03200 585 LDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNT 664 (2102)
T ss_pred HHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC
Confidence 99999887754443211 34679999999999999999999999999863322 2233567899999999999
Q ss_pred hHHHHHHHHHHHHhhhhhhhhh----hhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhCh--hhHHHHHHHHHHHHh
Q 010290 372 PDVRLNIISKLDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWL 445 (513)
Q Consensus 372 ~~vr~~a~~~l~~i~~~~~~~~----~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~--~~~~~~~~~~l~~~l 445 (513)
..++..++.+|..+......+. .....+|.|.+++++.+..++..++.++..++..... +......+|.+.+++
T Consensus 665 ~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lL 744 (2102)
T PLN03200 665 EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVL 744 (2102)
T ss_pred hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHH
Confidence 9999999999999985332221 3356788899999999999999999999999876422 223456789999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHhChhh------HhhhhHHHHHhhhcCcch
Q 010290 446 KDKVYSIRDAAANNVKRLAEEFGPDW------AMQHIVPQVALIKSSRNL 489 (513)
Q Consensus 446 ~d~~~~VR~~a~~~l~~l~~~~~~~~------~~~~i~~~L~~~~~~~~~ 489 (513)
.+.++.+|+.|+.++..+++....+. .....+..|.++++..+.
T Consensus 745 r~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~ 794 (2102)
T PLN03200 745 REGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDL 794 (2102)
T ss_pred HhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCc
Confidence 99999999999999999998776443 235667777788876643
No 17
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.85 E-value=1.1e-19 Score=180.28 Aligned_cols=452 Identities=16% Similarity=0.151 Sum_probs=293.2
Q ss_pred CCCCCCCCCcHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhhccCCchHHHHHHHHH----hhcccc
Q 010290 1 MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEE----LGVFIP 76 (513)
Q Consensus 1 ~~~~~~~~~~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~----l~~~~~ 76 (513)
+|+|+|. ++..++-.|-+-||+.|+.|-..|.+-....-|+-+...|.+++....+...........+ ++...+
T Consensus 259 Le~Ied~--~~Rnlil~Mi~rdPs~RlSAedyL~~yrG~~FP~yFy~FL~~Y~~~~~~~~~~~p~~~~~~~gs~i~d~~~ 336 (1431)
T KOG1240|consen 259 LEKIEDV--SLRNLILSMIQRDPSKRLSAEDYLQKYRGLVFPEYFYSFLYDYLDRFVPLTTSTPISDNTCTGSTIEDNVK 336 (1431)
T ss_pred HHhCcCc--cHHHHHHHHHccCchhccCHHHHHHhhhccccHHHHHHHHHHHHHhcCCccccCccccccccCcccccccc
Confidence 3566776 7888888899999999999998888876666787766677777666222211111111111 111111
Q ss_pred cccCch---hh------hhh---hHHHHHhhccchh--HHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCc---
Q 010290 77 YVGGLE---YA------NVL---LPPLETLCTVEET--CVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWF--- 139 (513)
Q Consensus 77 ~~~~~~---~~------~~l---~~~l~~l~~~~~~--~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~--- 139 (513)
...+.. +. +.+ ...........++ ..-..+++--..+...+.. ...+-+.......-.++
T Consensus 337 ~~~~p~n~~~~~~~~~~h~ln~~~~~~~~~~~S~De~~~~~~~al~~~r~~~~~l~~---~~dl~~~~q~~~~~~~~~~~ 413 (1431)
T KOG1240|consen 337 LLDGPTNKIYRDFSQICHCLNFPLIKDGGTITSSDEIIDSISKALEFSRHLIENLDV---IQDLKPEKQLWTARSSPNIK 413 (1431)
T ss_pred cccCcccchhhhhhccccccccccccccccccCCcHHHHHHHHHHhhhhhhcccchh---hhccchHHhcccccCCcccC
Confidence 111100 00 000 0000001112222 2222233221123222211 11122222222211222
Q ss_pred chhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCC-CchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhH
Q 010290 140 TARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQD-DMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSV 218 (513)
Q Consensus 140 ~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~v 218 (513)
..+..++-++ ++.+...+.. ....-|..|.+.|..++..+..+.....++|++..++.|+...|
T Consensus 414 ~~~~~ga~l~---------------vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~V 478 (1431)
T KOG1240|consen 414 DPKEEGAVLF---------------VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADV 478 (1431)
T ss_pred Cccccceeee---------------HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHH
Confidence 1233333322 2333333322 24567888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCh------hhhhhhHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHH----
Q 010290 219 RLLAVEGCGALGKLLEP------QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVR---- 287 (513)
Q Consensus 219 r~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~---- 287 (513)
|..|+.++..+...+.+ ..+.++++|.+..++.| ....||.+.+..|+.++... ..++..-..
T Consensus 479 ra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA------~rFle~~q~~~~~ 552 (1431)
T KOG1240|consen 479 RATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA------YRFLELTQELRQA 552 (1431)
T ss_pred HHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH------HHHHHHHHHHHhc
Confidence 99999999887765432 34567799999999999 77889999999999998652 112211111
Q ss_pred -hcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHh
Q 010290 288 -LLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL 366 (513)
Q Consensus 288 -~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~ 366 (513)
+++|++.+- .+.....-+...+...+-..+..++.|+.+.||++.++.+..+|..+|++...+.+++.+..+
T Consensus 553 g~~n~~nset-------~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTf 625 (1431)
T KOG1240|consen 553 GMLNDPNSET-------APEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITF 625 (1431)
T ss_pred ccccCccccc-------ccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHH
Confidence 234444330 000000001112223333445677889999999999999999999999988888999999999
Q ss_pred cCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHH--hChhhHHHHHHHHHHHH
Q 010290 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ--LGVGFFDDKLGALCMQW 444 (513)
Q Consensus 367 l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~--~~~~~~~~~~~~~l~~~ 444 (513)
|+|+++..|.+.+..+..++-.+|.....+.++|.+++.+.|+...|-..|+.++..+++. +.+..+ ..++.....+
T Consensus 626 LNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v-~~i~~~v~Pl 704 (1431)
T KOG1240|consen 626 LNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV-KDILQDVLPL 704 (1431)
T ss_pred hcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH-HHHHHhhhhh
Confidence 9999999999999999988888898878899999999999999999999999999888875 222222 3477778889
Q ss_pred hcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhhcC
Q 010290 445 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKSS 486 (513)
Q Consensus 445 l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~~ 486 (513)
|..|+.+||.+++..+..+.+.++.......+.|.+..+++.
T Consensus 705 L~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~~ 746 (1431)
T KOG1240|consen 705 LCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLER 746 (1431)
T ss_pred eeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhhc
Confidence 999999999999999999999998766666666666665554
No 18
>PRK09687 putative lyase; Provisional
Probab=99.85 E-value=2e-19 Score=161.57 Aligned_cols=253 Identities=19% Similarity=0.174 Sum_probs=176.1
Q ss_pred HHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHH
Q 010290 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244 (513)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 244 (513)
.+.+..++.|++..||..++..|+.+.. +..++.+..+++|+++.+|..++.+|+.+...-.. ....+|
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~~ 93 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNVFN 93 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHHH
Confidence 4556666788888888888888876652 24556666678888888888888888887642111 234667
Q ss_pred HHHHh-cCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhh
Q 010290 245 VIVNF-SQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPC 323 (513)
Q Consensus 245 ~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~ 323 (513)
.+..+ .+|+++.||.+++.+||.++.. ........++.+...+.|+++.||..++.+|+.+.. +..++.
T Consensus 94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~--~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------~~ai~~ 163 (280)
T PRK09687 94 ILNNLALEDKSACVRASAINATGHRCKK--NPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--------EAAIPL 163 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhccccc--ccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--------HHHHHH
Confidence 77665 6788888888888888887432 111123456666677778888888888888876532 334566
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Q 010290 324 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 403 (513)
Q Consensus 324 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~ 403 (513)
+..+++|+++.||..++.+|+.+.. + .+...+.+...++|+++.||..|+.+|+.+.. ...+|.|.
T Consensus 164 L~~~L~d~~~~VR~~A~~aLg~~~~--~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------~~av~~Li 229 (280)
T PRK09687 164 LINLLKDPNGDVRNWAAFALNSNKY--D----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------KRVLSVLI 229 (280)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcCCC--C----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------hhHHHHHH
Confidence 6677788888888888888887721 1 12456777788888888888888888887643 46777777
Q ss_pred HhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhc-CchhHHHHHHHHHHHH
Q 010290 404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKR 462 (513)
Q Consensus 404 ~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-d~~~~VR~~a~~~l~~ 462 (513)
..+++++ +|..++.+++.+.. +..+|.+..++. +++..|+..+.+++.+
T Consensus 230 ~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 230 KELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 7777766 45566777766642 246788888775 7788888888777653
No 19
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.85 E-value=1.5e-17 Score=154.59 Aligned_cols=313 Identities=16% Similarity=0.124 Sum_probs=240.7
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHh---hhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCh-
Q 010290 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATV---EAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP- 235 (513)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~- 235 (513)
+...++..++.+++++.+.||..++..++.++..+ |.......+=.++.+.+....++|--..+.++..+....+-
T Consensus 601 ~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 601 HLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred chHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 45567778888889999999999988877776544 45555666667777778888888887777777666654332
Q ss_pred --hhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcccc---chHHHHHHhcCCCcHHHHHHHHHhHHHHHhh
Q 010290 236 --QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS---DVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 310 (513)
Q Consensus 236 --~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~---~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 310 (513)
+.-...++|.+..++.+...+|....+..++.|+...+...... .+.--+...++..+.++|.+|...+|.+++.
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 12245688888888889999999999999999997755433222 3444556667888899999999999999999
Q ss_pred hChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhh
Q 010290 311 LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 390 (513)
Q Consensus 311 ~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~ 390 (513)
+|+.++...+ ..-++-.+.+.|....-+++-+++.+|.. .++|.+..--..++.+|+..+++++..+.+..|
T Consensus 761 iGPqdvL~~L----lnnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig 832 (975)
T COG5181 761 IGPQDVLDIL----LNNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIG 832 (975)
T ss_pred cCHHHHHHHH----HhcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHH
Confidence 9996655444 44445556667777777777788777753 367888877788899999999999999999988
Q ss_pred hhh--hhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh---ChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 010290 391 IDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 465 (513)
Q Consensus 391 ~~~--~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~---~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~ 465 (513)
... +-..+.|.+...+.|.+.-.|+.+...+..++-.+ |.+...-|++..+..-+-+++|.|.+...+.+..+..
T Consensus 833 ~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~ 912 (975)
T COG5181 833 QASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFAT 912 (975)
T ss_pred HHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHH
Confidence 653 34678899999999999999999999999887654 3344455788888888999999999999999999999
Q ss_pred HhChhhHhhhhHHHH
Q 010290 466 EFGPDWAMQHIVPQV 480 (513)
Q Consensus 466 ~~~~~~~~~~i~~~L 480 (513)
.+|+.-+.+++...|
T Consensus 913 ~lg~g~~m~Yv~qGL 927 (975)
T COG5181 913 VLGSGAMMKYVQQGL 927 (975)
T ss_pred HhccHHHHHHHHHhc
Confidence 999865555555444
No 20
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2.3e-17 Score=155.15 Aligned_cols=432 Identities=16% Similarity=0.133 Sum_probs=254.1
Q ss_pred hhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhc-cchhHHHHHHHHHHHHHHhhcChHHHHhh-H
Q 010290 50 IPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMREQDVVEH-F 126 (513)
Q Consensus 50 ~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~~~~~~~-~ 126 (513)
++++.. -.|..+.+|.....+.......- +.+....+.|.+++.++ ..++.+|+..+-..+.++.+....+-..+ +
T Consensus 19 ~~~~~~~g~d~~~~v~~~ml~a~~~~~~~~-~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~ 97 (569)
T KOG1242|consen 19 LLFLVSAGEDRRIDVRGNMLEAGEAAINQH-GDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISI 97 (569)
T ss_pred ceeecccCCCcchhhHHhHHHHHHHHHHhh-hHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHH
Confidence 444444 45556667776666665544432 34445566777766443 34666777666666666666544332221 2
Q ss_pred HHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhh-HHHHHH
Q 010290 127 IPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHL-KSEIMS 205 (513)
Q Consensus 127 ~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~l~~ 205 (513)
+..+..-..-++..+|.+...++..+..........++.+.+.++++.....-|..++..+..+.+..+-+.. ...++.
T Consensus 98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~ 177 (569)
T KOG1242|consen 98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLD 177 (569)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHH
Confidence 3333333344556667777776665554444444455566666666655666666666666666655443332 234555
Q ss_pred HHHHhhhccchhHHH-HHHHHHHHhhccCCh--hhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchH
Q 010290 206 IFEELTQDDQDSVRL-LAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV 282 (513)
Q Consensus 206 ~l~~l~~d~~~~vr~-~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll 282 (513)
.+.+...|.+...+. .+..+.......+|+ +.+...++|.+.....|....||.++..+...+...+..... ..++
T Consensus 178 ~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV-K~ll 256 (569)
T KOG1242|consen 178 NLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV-KLLL 256 (569)
T ss_pred HHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh-hHhh
Confidence 666666665443333 455555555555543 334444566666666677777777777777777666555442 3444
Q ss_pred HHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH--HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHH
Q 010290 283 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360 (513)
Q Consensus 283 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 360 (513)
|.++..+.+..|.-+.++++.++.+...-+.. ...+.++|.+...+.|..+.+|.++..++..++....... ...+.
T Consensus 257 psll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~i 335 (569)
T KOG1242|consen 257 PSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKII 335 (569)
T ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHH
Confidence 54444444446666777777777666543322 3445667777777777777777777777777766555443 45567
Q ss_pred HHHHHhcCCCChHHHHHHHHHHH-HhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChh----hHHH
Q 010290 361 PIFLSLLKDEFPDVRLNIISKLD-QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----FFDD 435 (513)
Q Consensus 361 ~~l~~~l~d~~~~vr~~a~~~l~-~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~----~~~~ 435 (513)
|.+++.+.|+...+....-.... +++..+....+ ..++|.+.+-+.+.+...+..++..++.++...... .|..
T Consensus 336 p~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psL-almvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~ 414 (569)
T KOG1242|consen 336 PTLLDALADPSCYTPECLDSLGATTFVAEVDAPSL-ALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP 414 (569)
T ss_pred HHHHHHhcCcccchHHHHHhhcceeeeeeecchhH-HHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH
Confidence 77777777776454433222111 22333333323 566777777777777777777777777777665221 2445
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhhcC
Q 010290 436 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKSS 486 (513)
Q Consensus 436 ~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~~ 486 (513)
.++|.+...+.|+.|+||..++++++.+.+..|...+ +...|.+.+...+
T Consensus 415 ~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~ 464 (569)
T KOG1242|consen 415 SLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTS 464 (569)
T ss_pred HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhcc
Confidence 5667777777777777777777777777777777655 6667777666544
No 21
>PRK09687 putative lyase; Provisional
Probab=99.84 E-value=3.6e-19 Score=159.99 Aligned_cols=252 Identities=21% Similarity=0.227 Sum_probs=199.0
Q ss_pred HHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHH
Q 010290 204 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVP 283 (513)
Q Consensus 204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~ 283 (513)
.+.|...+.|++..||..++.+|..+. .+.+++.+..+++|+++.+|..++.+|+.+...- ......+|
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~--------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~---~~~~~a~~ 93 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRG--------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAK---RCQDNVFN 93 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcC--------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc---cchHHHHH
Confidence 445566789999999999999998776 2457788888899999999999999999975310 00245778
Q ss_pred HHHHh-cCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHH
Q 010290 284 AYVRL-LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPI 362 (513)
Q Consensus 284 ~l~~~-l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 362 (513)
.+..+ ++|+++.||..|+.+||.++.... .....+++.+.....|++|.||..++.+|+.+. .+..++.
T Consensus 94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--------~~~ai~~ 163 (280)
T PRK09687 94 ILNNLALEDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN--------DEAAIPL 163 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC--------CHHHHHH
Confidence 88776 799999999999999999864211 112334555666778999999999999998765 2346789
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHH
Q 010290 363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM 442 (513)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~ 442 (513)
+..+++|+++.||..|+.+||.+.. + .+.+.+.|...+.|.++.||..++.+++.+. . ...+|.++
T Consensus 164 L~~~L~d~~~~VR~~A~~aLg~~~~--~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~----~----~~av~~Li 229 (280)
T PRK09687 164 LINLLKDPNGDVRNWAAFALNSNKY--D----NPDIREAFVAMLQDKNEEIRIEAIIGLALRK----D----KRVLSVLI 229 (280)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcCCC--C----CHHHHHHHHHHhcCCChHHHHHHHHHHHccC----C----hhHHHHHH
Confidence 9999999999999999999999821 1 2567888999999999999999999998753 2 35899999
Q ss_pred HHhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhhc-Cc-chHHHHHHHHHHH
Q 010290 443 QWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKS-SR-NLVLNSVLSLLKN 500 (513)
Q Consensus 443 ~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~-~~-~~~~r~~~~~~~~ 500 (513)
+.+.|++ +|..++.++|.+ |. +..+|.|..+++ ++ .++.+.+..+|..
T Consensus 230 ~~L~~~~--~~~~a~~ALg~i----g~----~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 230 KELKKGT--VGDLIIEAAGEL----GD----KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHcCCc--hHHHHHHHHHhc----CC----HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 9999976 788899999887 43 468899988885 43 6788888887764
No 22
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=8.2e-18 Score=158.16 Aligned_cols=431 Identities=16% Similarity=0.160 Sum_probs=317.6
Q ss_pred hhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHh-hHH
Q 010290 50 IPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE-HFI 127 (513)
Q Consensus 50 ~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~-~~~ 127 (513)
+..+.+ ...+.+.+|++.+.++..+.....+ .......+.+.++++.....-|..+...+..+.+....+.+.+ .++
T Consensus 98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l 176 (569)
T KOG1242|consen 98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKG-LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFL 176 (569)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhc-cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHH
Confidence 333444 5667889999999999877765443 2345567777777777777778888888888887766554444 366
Q ss_pred HHHHHhhcCCCc-chhhhHHhhhHhhcCCCCHH---HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHH
Q 010290 128 PLVKRLAAGEWF-TARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEI 203 (513)
Q Consensus 128 ~~l~~l~~d~~~-~~R~~~~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 203 (513)
.-+.....|... ..|..+...+.....++|.. +.-.+++.++....|..+.||.++..+...+...+....+.. +
T Consensus 177 ~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~-l 255 (569)
T KOG1242|consen 177 DNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL-L 255 (569)
T ss_pred HHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH-h
Confidence 777777777654 44445555555666666655 677788888888899999999999999999999887655444 4
Q ss_pred HHHHHHhhhccchhHHHHHHHHHHHhhccCCh--hhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccch
Q 010290 204 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDV 281 (513)
Q Consensus 204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 281 (513)
+|.+..-+.+..|.-+.++++.++.++...+. +.+.+.++|.+.+.+.|..+.||.++..++..++....... ...+
T Consensus 256 lpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~ 334 (569)
T KOG1242|consen 256 LPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKI 334 (569)
T ss_pred hhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHH
Confidence 44444444444899999999999999988776 35677899999999999999999999999999988766544 4678
Q ss_pred HHHHHHhcCCCcHHHHHHHHHhHHH--HHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHH----H
Q 010290 282 VPAYVRLLRDNEAEVRIAAAGKVTK--ICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA----T 355 (513)
Q Consensus 282 l~~l~~~l~d~~~~vr~~a~~~l~~--~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~----~ 355 (513)
+|.+...+.|+...+.. ++..|+. +...+.. .-...++|.+..-+.+++...++.++..++.++....... +
T Consensus 335 ip~Lld~l~dp~~~~~e-~~~~L~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapf 412 (569)
T KOG1242|consen 335 IPTLLDALADPSCYTPE-CLDSLGATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPF 412 (569)
T ss_pred HHHHHHHhcCcccchHH-HHHhhcceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhh
Confidence 89999999999855543 3333332 2222232 2346788999999999999999999999999998874333 3
Q ss_pred HHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHhChhhHH
Q 010290 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGFFD 434 (513)
Q Consensus 356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~-~~~vR~~~~~~l~~l~~~~~~~~~~ 434 (513)
.+.++|-+...+.|..|+||..+.++|+.+.+.+|...+ +...|.+.+...+. ....|..+++.++.+....+.+.+.
T Consensus 413 l~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~ 491 (569)
T KOG1242|consen 413 LPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVE 491 (569)
T ss_pred HHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHH
Confidence 356777777788899999999999999999999998877 88899988877654 5667889999999999888877665
Q ss_pred HHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHHhChhhH--hhhhHHHHHhhhcCc
Q 010290 435 DKLGALCMQWLK--DKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVALIKSSR 487 (513)
Q Consensus 435 ~~~~~~l~~~l~--d~~~~VR~~a~~~l~~l~~~~~~~~~--~~~i~~~L~~~~~~~ 487 (513)
+ ++|.++.... ...+.+|..-.+.+.-+-..++..+. ...+++.+.+-+.|.
T Consensus 492 ~-~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~ 547 (569)
T KOG1242|consen 492 D-ILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADN 547 (569)
T ss_pred H-HHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhc
Confidence 4 5666655433 33445888888887776666665443 244555554444444
No 23
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.84 E-value=1.5e-18 Score=182.43 Aligned_cols=273 Identities=20% Similarity=0.171 Sum_probs=214.4
Q ss_pred HHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHH
Q 010290 164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHIL 243 (513)
Q Consensus 164 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 243 (513)
-++.+...++|+++.||+.++..|+.+.. +..+|.|...++|+++.||..|+.+|..+.+..+. .
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~ 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------A 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------h
Confidence 45677888999999999999999998752 34567777889999999999999999988654332 2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhh
Q 010290 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPC 323 (513)
Q Consensus 244 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~ 323 (513)
+.+...++++++.||.+++..|+.+.. .. ...+...++|+++.||.+|+.+|+.+.. . +.
T Consensus 687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~--------~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~----~-------~~ 746 (897)
T PRK13800 687 PALRDHLGSPDPVVRAAALDVLRALRA--------GD-AALFAAALGDPDHRVRIEAVRALVSVDD----V-------ES 746 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcc--------CC-HHHHHHHhcCCCHHHHHHHHHHHhcccC----c-------HH
Confidence 455567778999999999999988641 11 2456778999999999999999998632 1 23
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Q 010290 324 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 403 (513)
Q Consensus 324 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~ 403 (513)
+..++.|+++.||..++..|+.+...-. ...+.+..+++|+++.||.+++.+|+.+... +.+.+.+.
T Consensus 747 l~~~l~D~~~~VR~~aa~aL~~~~~~~~------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~ 813 (897)
T PRK13800 747 VAGAATDENREVRIAVAKGLATLGAGGA------PAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAAT 813 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhccccc------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHH
Confidence 4567899999999999999998864211 2267788999999999999999999988542 33445677
Q ss_pred HhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhh
Q 010290 404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALI 483 (513)
Q Consensus 404 ~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~ 483 (513)
..++|++|.||..++.+++.+.. +..++.+..++.|+++.||..|+.+|+.+ -++ ....+.|...
T Consensus 814 ~aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~---~~~----~~a~~~L~~a 878 (897)
T PRK13800 814 AALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRW---PGD----PAARDALTTA 878 (897)
T ss_pred HHhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhcc---CCC----HHHHHHHHHH
Confidence 88899999999999999987642 23568899999999999999999999996 122 3567888888
Q ss_pred hcCcchHHH-HHHHHHH
Q 010290 484 KSSRNLVLN-SVLSLLK 499 (513)
Q Consensus 484 ~~~~~~~~r-~~~~~~~ 499 (513)
++|++...| .++.++.
T Consensus 879 l~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 879 LTDSDADVRAYARRALA 895 (897)
T ss_pred HhCCCHHHHHHHHHHHh
Confidence 888876555 5566654
No 24
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=1.8e-17 Score=152.64 Aligned_cols=374 Identities=15% Similarity=0.112 Sum_probs=277.6
Q ss_pred hccchhHHHHHHHHHHHHHHhhcCh----HHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH---HHHHHHHH
Q 010290 95 CTVEETCVRDKAVESLCRIGSQMRE----QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA---LKTELRTI 167 (513)
Q Consensus 95 ~~~~~~~vR~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~---~~~~l~~~ 167 (513)
++|+-.+-|.+|+--+.++.+.+-. +++...+-.+...+....+...|.++...++++.-..|.+ |...+++.
T Consensus 9 ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~P 88 (675)
T KOG0212|consen 9 LTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPP 88 (675)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHH
Confidence 3455566666666666666654422 2333333335555666666667776666666554333333 78899999
Q ss_pred HHHHcCCCchHHHHHHHHhHHHHHHHhhhh--hhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCh----hhhhhh
Q 010290 168 YRQLCQDDMPMVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAH 241 (513)
Q Consensus 168 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~ 241 (513)
+..++.|++..||..||+++..+++....+ .+.+.++..+.++..|++..||.+| +.+..+.+.+.. ....+.
T Consensus 89 v~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tFsL~~ 167 (675)
T KOG0212|consen 89 VLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTFSLPE 167 (675)
T ss_pred HHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccccccCHHH
Confidence 999999999999999999999999877554 3467888999999999999988754 555555543322 223566
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHH---H
Q 010290 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL---A 316 (513)
Q Consensus 242 l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~---~ 316 (513)
++|.+.+.+.+.++.+|...+..+..+-..-+-+. +.+.+++.+++.+.|+..+||..+-..++.+...+..+. -
T Consensus 168 ~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d 247 (675)
T KOG0212|consen 168 FIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMD 247 (675)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccC
Confidence 89999999999999999999988877754433222 357899999999999999999999998999888764331 1
Q ss_pred HHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHH--HhHHHHHHHhcCCCCh-HHHHHHHHHHHHhhhhhhhhh
Q 010290 317 IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI--EQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGIDL 393 (513)
Q Consensus 317 ~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~-~vr~~a~~~l~~i~~~~~~~~ 393 (513)
....++.+..-++.+++.++..++.++..+.+..|.+... ..++..+++++.|.++ .++..+...=+.+...++.+.
T Consensus 248 ~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~ 327 (675)
T KOG0212|consen 248 YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSER 327 (675)
T ss_pred cccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhh
Confidence 2466777777788999999999999999999988877643 5667777788888776 466666555444444333322
Q ss_pred h-----hhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhH--HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 010290 394 L-----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (513)
Q Consensus 394 ~-----~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~--~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~ 466 (513)
. ...++..+...+.+.....|.+++.++..+....+.+.+ .+.+.+.+++-++|++.+|-..++..+..++..
T Consensus 328 ~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 328 LKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred hccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 2 137888899999999999999999999999888777653 356999999999999999999999999999986
Q ss_pred hCh
Q 010290 467 FGP 469 (513)
Q Consensus 467 ~~~ 469 (513)
...
T Consensus 408 ~~~ 410 (675)
T KOG0212|consen 408 SNS 410 (675)
T ss_pred ccc
Confidence 544
No 25
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.83 E-value=1.7e-18 Score=181.87 Aligned_cols=275 Identities=19% Similarity=0.160 Sum_probs=218.0
Q ss_pred HHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHH
Q 010290 126 FIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMS 205 (513)
Q Consensus 126 ~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 205 (513)
.++.+...++|+++.+|..|+..++.+.. ...++.+..+++|+++.||..++.+|..+....+. .+
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~~ 687 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------AP 687 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------hH
Confidence 34566677789999999999999886642 34677888889999999999999999988654332 13
Q ss_pred HHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHH
Q 010290 206 IFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAY 285 (513)
Q Consensus 206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l 285 (513)
.+...++++++.||..++..|+.+... . .+.+...+.|+++.||..++.+|+.+.. .+.+
T Consensus 688 ~L~~~L~~~d~~VR~~A~~aL~~~~~~--~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~l 747 (897)
T PRK13800 688 ALRDHLGSPDPVVRAAALDVLRALRAG--D-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VESV 747 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccC--C-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHHH
Confidence 455577889999999999999886521 1 1345668899999999999999998621 1446
Q ss_pred HHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHH
Q 010290 286 VRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLS 365 (513)
Q Consensus 286 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ 365 (513)
..++.|+++.||..++.+|+.+...- ...++.+..+++|+++.||.+++..|+.+... ..+.+.+..
T Consensus 748 ~~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~~ 814 (897)
T PRK13800 748 AGAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAATA 814 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHHH
Confidence 77899999999999999999986421 12246677888999999999999999888531 223356788
Q ss_pred hcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHh
Q 010290 366 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 445 (513)
Q Consensus 366 ~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l 445 (513)
.++|+++.||.+|+.+|+.+.. +..++.|..+++|+++.||..++.+|+.+. + .+...+.+...+
T Consensus 815 aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----~~~a~~~L~~al 879 (897)
T PRK13800 815 ALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWP---G----DPAARDALTTAL 879 (897)
T ss_pred HhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---C----CHHHHHHHHHHH
Confidence 8999999999999999998643 456788999999999999999999998861 1 124677888999
Q ss_pred cCchhHHHHHHHHHHHH
Q 010290 446 KDKVYSIRDAAANNVKR 462 (513)
Q Consensus 446 ~d~~~~VR~~a~~~l~~ 462 (513)
+|++..||..|.++|..
T Consensus 880 ~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 880 TDSDADVRAYARRALAH 896 (897)
T ss_pred hCCCHHHHHHHHHHHhh
Confidence 99999999999999864
No 26
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.83 E-value=3.6e-16 Score=152.07 Aligned_cols=460 Identities=16% Similarity=0.164 Sum_probs=311.4
Q ss_pred HHHHHHhhcHHHHHHHhCh---Hhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhccch
Q 010290 24 QLRLNSIRRLSTIARALGE---ERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEE 99 (513)
Q Consensus 24 ~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 99 (513)
.++..++..+..+...+|. +.. ..++..+.- +...-..||+.++.++|.++...++.-+...+-.++..+.+...
T Consensus 148 ai~~e~lDil~d~lsr~g~ll~~fh-~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q 226 (1233)
T KOG1824|consen 148 AIKCEVLDILADVLSRFGTLLPNFH-LSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQ 226 (1233)
T ss_pred hhHHHHHHHHHHHHHhhcccCcchH-HHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCc
Confidence 4778887777777665552 221 122222222 44555668888888888887766554444444445555655555
Q ss_pred hHHHHHHHHHHHHHHhhcChHH--HHhhHHHHHHHhh---cCCCcchhhhHHhhhHhhcCCCCHH---HHHHHHHHHHHH
Q 010290 100 TCVRDKAVESLCRIGSQMREQD--VVEHFIPLVKRLA---AGEWFTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQL 171 (513)
Q Consensus 100 ~~vR~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~l~---~d~~~~~R~~~~~~l~~~~~~~~~~---~~~~l~~~l~~l 171 (513)
...-+..+.+++.++...+... -...+.|++.+++ +.++...|..+.+.+..+...++.+ +++++++...+.
T Consensus 227 ~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~y 306 (1233)
T KOG1824|consen 227 MSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSY 306 (1233)
T ss_pred hHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHH
Confidence 5555556777777777655432 2344777777776 5566777888888888887777776 566666666644
Q ss_pred c----------------------------------CCCchHHHHHHHHhHHHHHHHhhh--hhhHHHHHHHHHHhhhccc
Q 010290 172 C----------------------------------QDDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQ 215 (513)
Q Consensus 172 ~----------------------------------~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~ 215 (513)
+ +|-+|.||+++++++..+...-.. ..+.+.+-|.+..-+++.+
T Consensus 307 isYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkERE 386 (1233)
T KOG1824|consen 307 ISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKERE 386 (1233)
T ss_pred hccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHh
Confidence 3 123599999999999988754321 3455667777777888888
Q ss_pred hhHHHHHHHHHHHhhccCCh-------h----------------hhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 010290 216 DSVRLLAVEGCGALGKLLEP-------Q----------------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272 (513)
Q Consensus 216 ~~vr~~a~~~l~~l~~~~~~-------~----------------~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 272 (513)
+.|+.-.+.++..+....+. . .....++..+.+.+.+++-+.|..+...|..+....
T Consensus 387 EnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~l 466 (1233)
T KOG1824|consen 387 ENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVL 466 (1233)
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhC
Confidence 89998888887776654332 0 112235555666666666668888888888887766
Q ss_pred CCC--ccccchHHHHHHhcCCCc--HHHHHHHHHhHHHHHhhhChHHH---HHhhhhhhhhhcCCCcHHHHHHHHHHHHH
Q 010290 273 GPE--PTRSDVVPAYVRLLRDNE--AEVRIAAAGKVTKICRILNPELA---IQHILPCVKELSSDSSQHVRSALATVIMG 345 (513)
Q Consensus 273 ~~~--~~~~~ll~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~~~~d~~~~vr~~~~~~l~~ 345 (513)
++. .....++|.+...+.|.+ ...+..++..+.......+++.+ .+.+.|.+.....|+.+.+-..++...+.
T Consensus 467 p~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~ 546 (1233)
T KOG1824|consen 467 PGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQ 546 (1233)
T ss_pred cchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHH
Confidence 543 234678999999998865 56777787777777777777754 34556677777899999999999888888
Q ss_pred hchhh---------CHHHHHHhHHHHHHHhc--CCCChHHHHHHHHHHHHhhhhhhhhhhh---hhHHHHHHHhhcCCCh
Q 010290 346 MAPIL---------GKDATIEQLLPIFLSLL--KDEFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVELAEDRHW 411 (513)
Q Consensus 346 l~~~~---------~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~i~~~~~~~~~~---~~l~~~l~~l~~~~~~ 411 (513)
+++.. +...+...+....++.| +|.+.+||..|+.+++.++..+|.. .. +.++|.+.+-++ +.
T Consensus 547 lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~-l~~eL~~~L~il~eRl~--nE 623 (1233)
T KOG1824|consen 547 LVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDF-LGNELPRTLPILLERLG--NE 623 (1233)
T ss_pred HHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHh--ch
Confidence 87643 23334445555556655 4778999999999999999988842 22 344444444333 45
Q ss_pred hHHHHHHHHHHHHHHH---hChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhH---hhhhHHHHHhhhc
Q 010290 412 RVRLAIIEYIPLLASQ---LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA---MQHIVPQVALIKS 485 (513)
Q Consensus 412 ~vR~~~~~~l~~l~~~---~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~---~~~i~~~L~~~~~ 485 (513)
..|..|+.++..++.. +.......+++|.+..++.-.....|.+...++..+.++++.... .+.++-.+-.++.
T Consensus 624 iTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lis 703 (1233)
T KOG1824|consen 624 ITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLIS 703 (1233)
T ss_pred hHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhh
Confidence 6889999999988765 232333456899999999999999999999999999998875432 3455555555555
Q ss_pred Cc
Q 010290 486 SR 487 (513)
Q Consensus 486 ~~ 487 (513)
+.
T Consensus 704 es 705 (1233)
T KOG1824|consen 704 ES 705 (1233)
T ss_pred HH
Confidence 43
No 27
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.82 E-value=8.6e-16 Score=141.87 Aligned_cols=464 Identities=13% Similarity=0.114 Sum_probs=320.7
Q ss_pred hhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhccchh-HHHHHHHHHHHHHHhhcChHH
Q 010290 44 RTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEET-CVRDKAVESLCRIGSQMREQD 121 (513)
Q Consensus 44 ~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~-~vR~~a~~~l~~l~~~~~~~~ 121 (513)
+.++++.....+ +.+..|..-..+++.++.+++.--....|+.++..+.....++.+ .++..++.+++..+....++.
T Consensus 90 E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~ 169 (858)
T COG5215 90 ESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPED 169 (858)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHH
Confidence 345556555556 788999999999999999998765566788888877777766654 467788999999999888855
Q ss_pred HHhh----HHHHHHH-hhcCCCcchhhhHHhhhHhh----cCCC-CHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHH
Q 010290 122 VVEH----FIPLVKR-LAAGEWFTARVSSCGLFHVA----YPSA-PEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFA 191 (513)
Q Consensus 122 ~~~~----~~~~l~~-l~~d~~~~~R~~~~~~l~~~----~~~~-~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~ 191 (513)
.... +...+.. ..+.++..+|.++..++..- -.++ .++.++.+++..++..+.++.++..++..|+..+.
T Consensus 170 li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim 249 (858)
T COG5215 170 LIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIM 249 (858)
T ss_pred HHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHH
Confidence 4332 3333332 34456788999998887642 2333 33377889999999999999999999999998887
Q ss_pred HHhhh---hhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhcc----------CChh---------hhhhhHHHHHHHh
Q 010290 192 ATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL----------LEPQ---------DCVAHILPVIVNF 249 (513)
Q Consensus 192 ~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~----------~~~~---------~~~~~l~~~l~~~ 249 (513)
...-+ ....+.+..+....++.++++|...+++.+..+++. +++. .-..+++|.+.++
T Consensus 250 ~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~L 329 (858)
T COG5215 250 MLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSL 329 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHH
Confidence 54321 233344555666677899999999999999877753 1110 0123478888777
Q ss_pred cC-------CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH---HHHHh
Q 010290 250 SQ-------DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQH 319 (513)
Q Consensus 250 ~~-------d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~ 319 (513)
+. +++|.+..++..+|.-+++..|+... ..++.++.+.++.+++.=|++|+.++|.+...-... .+.+.
T Consensus 330 L~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~-~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~q 408 (858)
T COG5215 330 LEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIM-RPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQ 408 (858)
T ss_pred HHhcCCCccccccchhhhHHHHHHHHHHHhhhHhH-HHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHh
Confidence 63 45899999999999999998887764 448888899999999999999999999988742221 45567
Q ss_pred hhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHH---------------------------------HH----------
Q 010290 320 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA---------------------------------TI---------- 356 (513)
Q Consensus 320 l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---------------------------------~~---------- 356 (513)
.+|.+.....|+.-.++..++++++.++.+..... +.
T Consensus 409 alp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~ 488 (858)
T COG5215 409 ALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREV 488 (858)
T ss_pred hhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccc
Confidence 78888888899999999999999999876532100 00
Q ss_pred --------HhHHHHHHHh--cCCCChHHHHHHHHHHHHhhhhhhhhh------hhhhHHHHHHHh-------hc--CC--
Q 010290 357 --------EQLLPIFLSL--LKDEFPDVRLNIISKLDQVNQVIGIDL------LSQSLLPAIVEL-------AE--DR-- 409 (513)
Q Consensus 357 --------~~l~~~l~~~--l~d~~~~vr~~a~~~l~~i~~~~~~~~------~~~~l~~~l~~l-------~~--~~-- 409 (513)
..++..+.+. +.+.+.+.|.+..++|++++....... +...++..+.+. +. |.
T Consensus 489 ~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~ 568 (858)
T COG5215 489 ESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLL 568 (858)
T ss_pred cchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 1111111111 235567889999999999877543211 112222222211 11 11
Q ss_pred ChhHHHHHHHHHHHHHHHhCh--hhHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHhChhhH--hhhhHHHHHhhh
Q 010290 410 HWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLKDKV-YSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVALIK 484 (513)
Q Consensus 410 ~~~vR~~~~~~l~~l~~~~~~--~~~~~~~~~~l~~~l~d~~-~~VR~~a~~~l~~l~~~~~~~~~--~~~i~~~L~~~~ 484 (513)
-..+....+..+..++...++ +...++++..+++.+.... .-+-.....+++.+...+++.|. ...++|.|..-+
T Consensus 569 ~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~al 648 (858)
T COG5215 569 VEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRAL 648 (858)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Confidence 134566777778888887776 5667789999999988763 44566778888889888887765 378899998877
Q ss_pred cCcch-HHHHHHHHHH----Hhcccceee
Q 010290 485 SSRNL-VLNSVLSLLK----NAGIDAVFY 508 (513)
Q Consensus 485 ~~~~~-~~r~~~~~~~----~i~~~~~~~ 508 (513)
+..+| +...++..++ .+|-|+.+|
T Consensus 649 n~~d~~v~~~avglvgdlantl~~df~~y 677 (858)
T COG5215 649 NCTDRFVLNSAVGLVGDLANTLGTDFNIY 677 (858)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 55443 4444444444 445555554
No 28
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.82 E-value=9.5e-16 Score=149.24 Aligned_cols=485 Identities=13% Similarity=0.180 Sum_probs=305.8
Q ss_pred HHHHHhcCccHHHHHHHhhcHHHHHH----HhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhh
Q 010290 13 VLIDELKNDDIQLRLNSIRRLSTIAR----ALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVL 87 (513)
Q Consensus 13 ~l~~~l~~~d~~~r~~a~~~l~~i~~----~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l 87 (513)
.+++++.+.|.+.|.+|.+.|.+-.. .++.+ ....++..+.+ +.|.+++|+..|.+++|-++..++..+. ..+
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~d-Se~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~l-e~~ 86 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDD-SERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQL-ETI 86 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhcccc-chhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHH-HHH
Confidence 68899999999999999988865432 22222 23345566666 7899999999999999999987765443 333
Q ss_pred hH-HHHHhhccchhHHHHHHHHHHHHHHhhcCh-------HHHHhhHHHHHHHhh--cCCCcchhhhHHhhhHhhcCCCC
Q 010290 88 LP-PLETLCTVEETCVRDKAVESLCRIGSQMRE-------QDVVEHFIPLVKRLA--AGEWFTARVSSCGLFHVAYPSAP 157 (513)
Q Consensus 88 ~~-~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-------~~~~~~~~~~l~~l~--~d~~~~~R~~~~~~l~~~~~~~~ 157 (513)
.. +...++ .+-...|..+.-+|......+++ ..+...+.|.+.+.. ..+...++..++.+++.+..++|
T Consensus 87 ve~L~~~~~-s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g 165 (1233)
T KOG1824|consen 87 VENLCSNML-SGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFG 165 (1233)
T ss_pred HHHHhhhhc-cchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhc
Confidence 33 333333 34455677777788888777765 223334555555432 24556789999999987776665
Q ss_pred HH---HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCC
Q 010290 158 EA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE 234 (513)
Q Consensus 158 ~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 234 (513)
.- ....++..+..-+..+...||+.++.+++.++...+...+...+-.++..+-+..+...-..-+++++.++...|
T Consensus 166 ~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag 245 (1233)
T KOG1824|consen 166 TLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAG 245 (1233)
T ss_pred ccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhc
Confidence 54 555666777777778889999999999999999888755554444444555555566666667888988887766
Q ss_pred hh--hhhhhHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcC-----------------
Q 010290 235 PQ--DCVAHILPVIVNFS---QDKSWRVRYMVANQLYELCEAVGPEPT--RSDVVPAYVRLLR----------------- 290 (513)
Q Consensus 235 ~~--~~~~~l~~~l~~~~---~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~ll~~l~~~l~----------------- 290 (513)
.. ...+.++|.+.+.+ +..+...|+.++++++.+...++.+.. .++++..+.+.+.
T Consensus 246 ~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~ 325 (1233)
T KOG1824|consen 246 HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMF 325 (1233)
T ss_pred chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhh
Confidence 43 23456888888877 666778999999999999988776542 2445555544331
Q ss_pred -----------------CCcHHHHHHHHHhHHHHHhhhChH---HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhh
Q 010290 291 -----------------DNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL 350 (513)
Q Consensus 291 -----------------d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 350 (513)
|-.|.||++|++++..++.. ..+ .+.+.+-|.+...++++...||.-+..+...+..+.
T Consensus 326 ~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt 404 (1233)
T KOG1824|consen 326 LEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQT 404 (1233)
T ss_pred hhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcC
Confidence 11267999999999887653 111 344555666666666777777666655554443221
Q ss_pred CH----------------H----H---HHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhh------------------
Q 010290 351 GK----------------D----A---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI------------------ 389 (513)
Q Consensus 351 ~~----------------~----~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~------------------ 389 (513)
+. . . ....++..+.+.++++.-..|..++..|..++..+
T Consensus 405 ~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~ 484 (1233)
T KOG1824|consen 405 RPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYS 484 (1233)
T ss_pred CCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhh
Confidence 10 0 0 01223333444444433334555555555444332
Q ss_pred -------------------------hhhhh---hhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhC---------hhh
Q 010290 390 -------------------------GIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---------VGF 432 (513)
Q Consensus 390 -------------------------~~~~~---~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~---------~~~ 432 (513)
+.+.+ .+.+.|.+.....++-+.+-..|+.....+++.+. ...
T Consensus 485 l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~ 564 (1233)
T KOG1824|consen 485 LNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASP 564 (1233)
T ss_pred cCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCCh
Confidence 22211 12333444444566677777777777777766532 223
Q ss_pred HHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHHhChhhH--hhhhHHHHHhhhcCcchHHH-HHHHHHHHhcc
Q 010290 433 FDDKLGALCMQWL--KDKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVALIKSSRNLVLN-SVLSLLKNAGI 503 (513)
Q Consensus 433 ~~~~~~~~l~~~l--~d~~~~VR~~a~~~l~~l~~~~~~~~~--~~~i~~~L~~~~~~~~~~~r-~~~~~~~~i~~ 503 (513)
+...+....++.+ +|.+.+||++|+.++|.+...+|...- ...++|.+.+-+. |-+-| .+++++..|+.
T Consensus 565 ~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~ 638 (1233)
T KOG1824|consen 565 YVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAVKALTLIAM 638 (1233)
T ss_pred hHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHh
Confidence 3445666666654 588899999999999999999994211 2444555544332 34444 45566665553
No 29
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=4.1e-16 Score=143.81 Aligned_cols=414 Identities=15% Similarity=0.160 Sum_probs=298.7
Q ss_pred ccCCchHHHHHHHHHhhcccccccCchh---hhhhhH-HHHHhhccchhHHHHHHHHHHHHHHhhcChHH--HHhhHHHH
Q 010290 56 NNDDDDEVLLAMAEELGVFIPYVGGLEY---ANVLLP-PLETLCTVEETCVRDKAVESLCRIGSQMREQD--VVEHFIPL 129 (513)
Q Consensus 56 ~~~~~~~vr~~~~~~l~~~~~~~~~~~~---~~~l~~-~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~--~~~~~~~~ 129 (513)
+.|.-++-|++++..+.++++.+-.... ...++. +.......++..-|..++-++...+-.++.+. ..+.++|.
T Consensus 9 ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~P 88 (675)
T KOG0212|consen 9 LTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPP 88 (675)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHH
Confidence 4566777888888888877764433222 223333 33344455666677777777777666555543 34556777
Q ss_pred HHHhhcCCCcchhhhHHhhhHhhcCCCCHH---HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh----hhhHHH
Q 010290 130 VKRLAAGEWFTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA----AHLKSE 202 (513)
Q Consensus 130 l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~ 202 (513)
+..+.+|.+..+|+.||..+..+++....+ +.++++..++++..|.+..||. +++.+..+.+.+-. ....+.
T Consensus 89 v~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~tFsL~~ 167 (675)
T KOG0212|consen 89 VLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESASTFSLPE 167 (675)
T ss_pred HHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccccccccCHHH
Confidence 778889999999999999999888777665 7899999999999999999985 66777777765533 234678
Q ss_pred HHHHHHHhhhccchhHHHHHHHHHHHhhccCChh--hhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc---c
Q 010290 203 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---T 277 (513)
Q Consensus 203 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~ 277 (513)
++|.+.+-+.+.++..|...+..+..+-...+-+ .+.+.+++.+...++|++..||..+-.+++++......+. -
T Consensus 168 ~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d 247 (675)
T KOG0212|consen 168 FIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMD 247 (675)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccC
Confidence 9999999999999999999998887766543332 2356689999999999999999888777777776554332 2
Q ss_pred ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH--HHHHhhhhhhhhhcCCCcH-HHHHHHHHHHHHhchhhCHHH
Q 010290 278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQ-HVRSALATVIMGMAPILGKDA 354 (513)
Q Consensus 278 ~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~~~~ 354 (513)
..++++.+...+..+++.++..|+..+..+.+..|+. .+...++..+..++.+... .++..+...-+.+.+.++.+.
T Consensus 248 ~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~ 327 (675)
T KOG0212|consen 248 YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSER 327 (675)
T ss_pred cccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhh
Confidence 4678999999999999999999999999999887765 2233444444455555544 455555544444444443322
Q ss_pred -----HHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhh--hhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 010290 355 -----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (513)
Q Consensus 355 -----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~--~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~ 427 (513)
-...++..+.+.+.++..+.|.++..-+..+....+.+. ..+.+.+.+..-+.|++..|-..++..++.++..
T Consensus 328 ~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 328 LKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred hccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 235788999999999999999999999888888777664 3468888888888999999999999999988876
Q ss_pred hChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh
Q 010290 428 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW 471 (513)
Q Consensus 428 ~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~ 471 (513)
-....+. +++..++.+......-++..+.=.+.+++..+.++.
T Consensus 408 ~~~~~~~-~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~ 450 (675)
T KOG0212|consen 408 SNSPNLR-KFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAER 450 (675)
T ss_pred cccccHH-HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHH
Confidence 4443332 344455555555555566666666677777666643
No 30
>PTZ00429 beta-adaptin; Provisional
Probab=99.80 E-value=1.1e-14 Score=146.51 Aligned_cols=434 Identities=12% Similarity=0.069 Sum_probs=264.2
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhhH
Q 010290 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLP 89 (513)
Q Consensus 11 i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~ 89 (513)
+.++.+.|.+.+...|+.|++.+... -++|.+ ...+.+-+.+ +..++.++|+.+.-.+..+++.. ++..-...+
T Consensus 34 ~~ELr~~L~s~~~~~kk~alKkvIa~-mt~G~D--vS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~--pelalLaIN 108 (746)
T PTZ00429 34 GAELQNDLNGTDSYRKKAAVKRIIAN-MTMGRD--VSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ--PEKALLAVN 108 (746)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH-HHCCCC--chHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC--hHHHHHHHH
Confidence 56788889999988899998877654 334432 3455555556 67889999999998888876632 233334566
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH-HHHHHHHHH
Q 010290 90 PLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA-LKTELRTIY 168 (513)
Q Consensus 90 ~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~-~~~~l~~~l 168 (513)
.|.+-++|+++.+|..|+++++.+. ...+.+.+++.+.+...|.++.||..|+.++..++...++. ....+++.+
T Consensus 109 tl~KDl~d~Np~IRaLALRtLs~Ir----~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L 184 (746)
T PTZ00429 109 TFLQDTTNSSPVVRALAVRTMMCIR----VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDL 184 (746)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHcCC----cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHH
Confidence 7777778999999999999888763 34566778888889999999999999999999998876654 334577888
Q ss_pred HHHcCCCchHHHHHHHHhHHHHHHHhhhhh-hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHH
Q 010290 169 RQLCQDDMPMVRRSAATNLGKFAATVEAAH-LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIV 247 (513)
Q Consensus 169 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 247 (513)
.+++.|+++.|...|+.+|..+....+... .....+..+...+.+-++.-+...++.+...... .+.....++..+.
T Consensus 185 ~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~--~~~e~~~il~~l~ 262 (746)
T PTZ00429 185 VELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPS--DKESAETLLTRVL 262 (746)
T ss_pred HHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCC--CcHHHHHHHHHHH
Confidence 889999999999999999999976543210 1112222233344455566666666666442211 1222345677777
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhCCCcc---ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhh
Q 010290 248 NFSQDKSWRVRYMVANQLYELCEAVGPEPT---RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCV 324 (513)
Q Consensus 248 ~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l 324 (513)
..+++.++.|..++++++-.+......+.. ...+.+.++.+ ..+++++|-.++.++..+.... +..+... +..+
T Consensus 263 ~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~-P~lf~~~-~~~F 339 (746)
T PTZ00429 263 PRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIF-PNLLRTN-LDSF 339 (746)
T ss_pred HHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC-HHHHHHH-HHhh
Confidence 777778888888888877776543221110 01233444444 3456788888888887766643 3222222 2222
Q ss_pred hhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHH
Q 010290 325 KELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE 404 (513)
Q Consensus 325 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~ 404 (513)
.-..+|+.. +|...+..+..++..-. ...++.-+.....|.+.+.+..++.+++.++..+.. ..+.++..+.+
T Consensus 340 f~~~~Dp~y-IK~~KLeIL~~Lane~N----v~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~--~a~~cV~~Ll~ 412 (746)
T PTZ00429 340 YVRYSDPPF-VKLEKLRLLLKLVTPSV----APEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS--VAPDCANLLLQ 412 (746)
T ss_pred hcccCCcHH-HHHHHHHHHHHHcCccc----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHH
Confidence 233344443 66666666666654322 223444445555566666666666666666544321 12333333333
Q ss_pred hhcCC-------------------------------------ChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcC
Q 010290 405 LAEDR-------------------------------------HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD 447 (513)
Q Consensus 405 l~~~~-------------------------------------~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d 447 (513)
++.+. +...|.+.+|.+|..+..+.. ...++..++.-+.+
T Consensus 413 ll~~~~~~v~e~i~vik~IlrkyP~~~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L~~~i~~f~~ 489 (746)
T PTZ00429 413 IVDRRPELLPQVVTAAKDIVRKYPELLMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDIIQRFIDTIME 489 (746)
T ss_pred HhcCCchhHHHHHHHHHHHHHHCccHHHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh---HHHHHHHHHhhhcc
Confidence 33322 234555555555555544322 12234333333344
Q ss_pred chhHHHHHHHHHHHHHHHHhC
Q 010290 448 KVYSIRDAAANNVKRLAEEFG 468 (513)
Q Consensus 448 ~~~~VR~~a~~~l~~l~~~~~ 468 (513)
..+.||.+.+.+..++.-...
T Consensus 490 E~~~VqlqlLta~vKlfl~~p 510 (746)
T PTZ00429 490 HEQRVQLAILSAAVKMFLRDP 510 (746)
T ss_pred CCHHHHHHHHHHHHHHHhcCc
Confidence 556666666666666665544
No 31
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=9.9e-16 Score=156.13 Aligned_cols=430 Identities=20% Similarity=0.208 Sum_probs=302.5
Q ss_pred ccCCchHHHHHHHHHhhcccccccCch----hhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHH
Q 010290 56 NNDDDDEVLLAMAEELGVFIPYVGGLE----YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVK 131 (513)
Q Consensus 56 ~~~~~~~vr~~~~~~l~~~~~~~~~~~----~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 131 (513)
+.+++|..|++.+..|-.+.+++|... ..++|...+..++.|.+..++..|.++++-+-+.-+...-++.+-.++.
T Consensus 827 ~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV~sL~~ 906 (1702)
T KOG0915|consen 827 LTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLVDSLVN 906 (1702)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHHHHHHH
Confidence 678899999999999998888888532 3456777788899999999999999998876554333333333444555
Q ss_pred HhhcCCCcchhhh-HHhhh--Hhhc---------------CCCCHHHHHHHHHHHHHHcCCC-chHHHHHHHHhHHHHHH
Q 010290 132 RLAAGEWFTARVS-SCGLF--HVAY---------------PSAPEALKTELRTIYRQLCQDD-MPMVRRSAATNLGKFAA 192 (513)
Q Consensus 132 ~l~~d~~~~~R~~-~~~~l--~~~~---------------~~~~~~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~ 192 (513)
++...+-...... -..+| |.+. ...++-..++++-.|.++.++. .|+-|+.|+-.++.+++
T Consensus 907 tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~ 986 (1702)
T KOG0915|consen 907 TLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAK 986 (1702)
T ss_pred HHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHH
Confidence 5544211000000 00011 0111 1111113456777888888865 79999999999999998
Q ss_pred Hhhh--hhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCC--hhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 010290 193 TVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE--PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYEL 268 (513)
Q Consensus 193 ~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l 268 (513)
..+. +.+...++|-+.+.-.|++..|+.+....++.+..--. -+.+..+++.-+...+.+..|+||.+++-++..+
T Consensus 987 ~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dL 1066 (1702)
T KOG0915|consen 987 QAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADL 1066 (1702)
T ss_pred HHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 8765 45667899999999999999999999999988875422 2345667788888888999999999999999999
Q ss_pred HHHhCCCccc---cchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhh---C-------hHHHHHhhhhhhhh-hcCCCcHH
Q 010290 269 CEAVGPEPTR---SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL---N-------PELAIQHILPCVKE-LSSDSSQH 334 (513)
Q Consensus 269 ~~~~~~~~~~---~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~---~-------~~~~~~~l~~~l~~-~~~d~~~~ 334 (513)
...-+.+... ++++..+++.++|-...||.+|-.+...+.+.+ . ...+...++|.+.. ..-+.-..
T Consensus 1067 l~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~e 1146 (1702)
T KOG0915|consen 1067 LQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNE 1146 (1702)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHH
Confidence 8765444333 356667777888888999998866555544432 1 23566788888842 33467789
Q ss_pred HHHHHHHHHHHhchhhCHHH--HHHhHHHHHHHhcCCCChHH-------------------HHHHHH------HHHHhhh
Q 010290 335 VRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDV-------------------RLNIIS------KLDQVNQ 387 (513)
Q Consensus 335 vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~v-------------------r~~a~~------~l~~i~~ 387 (513)
||...+..+..+++..|... ....++|.+++....-.+.| |..+++ +++.++.
T Consensus 1147 vr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~ 1226 (1702)
T KOG0915|consen 1147 VRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCIN 1226 (1702)
T ss_pred HHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHH
Confidence 99999999999998888743 23567777777665433332 333322 2233333
Q ss_pred hhhhhhhhhhHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 010290 388 VIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA 464 (513)
Q Consensus 388 ~~~~~~~~~~l~~~l~~l~~~~-~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~ 464 (513)
.++.. +.+.++|.+.++...+ .-..|.+++..+..++..+|.+ .+..+++..++..+.|.+..||.+-+.+.|.++
T Consensus 1227 ~iD~~-vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~ 1305 (1702)
T KOG0915|consen 1227 YIDIS-VLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLA 1305 (1702)
T ss_pred hhhHH-HHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 33333 4478999999988765 6678889999999999988776 366789999999999999999999999999999
Q ss_pred HHhChhhHhhhhHHHHHhhhcC
Q 010290 465 EEFGPDWAMQHIVPQVALIKSS 486 (513)
Q Consensus 465 ~~~~~~~~~~~i~~~L~~~~~~ 486 (513)
..-.++.+...+-..+..++.+
T Consensus 1306 k~Ss~dq~qKLie~~l~~~l~k 1327 (1702)
T KOG0915|consen 1306 KFSSPDQMQKLIETLLADLLGK 1327 (1702)
T ss_pred hcCChHHHHHHHHHHHHHHhcc
Confidence 9888765544444444455543
No 32
>PTZ00429 beta-adaptin; Provisional
Probab=99.75 E-value=1.7e-13 Score=138.00 Aligned_cols=428 Identities=11% Similarity=0.067 Sum_probs=214.7
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhhH
Q 010290 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLP 89 (513)
Q Consensus 11 i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~ 89 (513)
+..+++.+.++|...|+...-.+...+..- |+. .--.+..+.+ +.|.+|.+|..+.+.++.+.- ....+.+.+
T Consensus 70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~-pel-alLaINtl~KDl~d~Np~IRaLALRtLs~Ir~----~~i~e~l~~ 143 (746)
T PTZ00429 70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQ-PEK-ALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV----SSVLEYTLE 143 (746)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccC-hHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc----HHHHHHHHH
Confidence 444445555555555555544443332211 111 1112333333 555555555555555544322 233444444
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH----------
Q 010290 90 PLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA---------- 159 (513)
Q Consensus 90 ~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~---------- 159 (513)
.+...+.|.++.||..|+-++.++....+.-.....+.+.+..+..|.++.+...|+.++..+.+..+..
T Consensus 144 ~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~ 223 (746)
T PTZ00429 144 PLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNR 223 (746)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence 4555555555555555555555554432211111223444444555555555555555554444332211
Q ss_pred -----------------------------HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHH----HHH
Q 010290 160 -----------------------------LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEI----MSI 206 (513)
Q Consensus 160 -----------------------------~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l----~~~ 206 (513)
....++..+...+++.++.|--++++++-.+.....++ ....+ .+.
T Consensus 224 Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~-~~~~~~~rl~~p 302 (746)
T PTZ00429 224 LVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE-LIERCTVRVNTA 302 (746)
T ss_pred HHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH-HHHHHHHHHHHH
Confidence 22344444445555555555555555544444332221 11221 122
Q ss_pred HHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHH
Q 010290 207 FEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYV 286 (513)
Q Consensus 207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~ 286 (513)
+..+ ...++++|..++..+..+....+. .+..+ +..+.-..+|+. .+|...++.|..++.. .....++.-+.
T Consensus 303 Lv~L-~ss~~eiqyvaLr~I~~i~~~~P~-lf~~~-~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane----~Nv~~IL~EL~ 374 (746)
T PTZ00429 303 LLTL-SRRDAETQYIVCKNIHALLVIFPN-LLRTN-LDSFYVRYSDPP-FVKLEKLRLLLKLVTP----SVAPEILKELA 374 (746)
T ss_pred HHHh-hCCCccHHHHHHHHHHHHHHHCHH-HHHHH-HHhhhcccCCcH-HHHHHHHHHHHHHcCc----ccHHHHHHHHH
Confidence 2333 234445555555555544443221 11111 111222223333 3555555555554321 11234555555
Q ss_pred HhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHh
Q 010290 287 RLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL 366 (513)
Q Consensus 287 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~ 366 (513)
....+.+.+++..++++++.++..+. ...+.++..+..++.+....+ ..++..+..+.+..... .+++.+...
T Consensus 375 eYa~d~D~ef~r~aIrAIg~lA~k~~--~~a~~cV~~Ll~ll~~~~~~v-~e~i~vik~IlrkyP~~----~il~~L~~~ 447 (746)
T PTZ00429 375 EYASGVDMVFVVEVVRAIASLAIKVD--SVAPDCANLLLQIVDRRPELL-PQVVTAAKDIVRKYPEL----LMLDTLVTD 447 (746)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHCccH----HHHHHHHHh
Confidence 66667777777777777777776542 234666777777776544333 34555555555544432 233444432
Q ss_pred c---CCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHH
Q 010290 367 L---KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ 443 (513)
Q Consensus 367 l---~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~ 443 (513)
+ .=.++..|.+.++.+|.+++.+.. ...++..+.+-+.+.+..||...+-+...+.-....+ ... .+..+++
T Consensus 448 ~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~-~~~-~l~~vL~ 522 (746)
T PTZ00429 448 YGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQG-MEP-QLNRVLE 522 (746)
T ss_pred hcccccccHHHHHHHHHHHHhhHhhHhh---HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHH-HHH-HHHHHHH
Confidence 2 113577888889999998876643 2455655555556678889999888888777654433 223 4444443
Q ss_pred -Hhc-CchhHHHHHHHHHHHHHHH
Q 010290 444 -WLK-DKVYSIRDAAANNVKRLAE 465 (513)
Q Consensus 444 -~l~-d~~~~VR~~a~~~l~~l~~ 465 (513)
+.+ +.+++||..|..-+.-+..
T Consensus 523 ~~t~~~~d~DVRDRA~~Y~rLLs~ 546 (746)
T PTZ00429 523 TVTTHSDDPDVRDRAFAYWRLLSK 546 (746)
T ss_pred HHHhcCCChhHHHHHHHHHHHHcC
Confidence 434 6889999999988876644
No 33
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=1.6e-13 Score=140.39 Aligned_cols=483 Identities=16% Similarity=0.155 Sum_probs=309.9
Q ss_pred HHHHhcCccHHHHHHHhhcHHHHHHHhCh--Hh--hhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCch------
Q 010290 14 LIDELKNDDIQLRLNSIRRLSTIARALGE--ER--TRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLE------ 82 (513)
Q Consensus 14 l~~~l~~~d~~~r~~a~~~l~~i~~~~~~--~~--~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~------ 82 (513)
+...+.|.+|..|.++.==|..+.+.+|. +. ..+++...+.. +.|.++-++-.+++-+|-+... |+..
T Consensus 823 l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYel-gd~~~k~~LV 901 (1702)
T KOG0915|consen 823 LDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYEL-GDSSLKKSLV 901 (1702)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEec-CCchhHHHHH
Confidence 33446688999999886555566677762 21 23455555555 6677777777777777644431 1110
Q ss_pred ---------------------------------------hhhhhhHH------------HHHhhcc-chhHHHHHHHHHH
Q 010290 83 ---------------------------------------YANVLLPP------------LETLCTV-EETCVRDKAVESL 110 (513)
Q Consensus 83 ---------------------------------------~~~~l~~~------------l~~l~~~-~~~~vR~~a~~~l 110 (513)
..+++.++ +.+|.++ ..+.-|..|+-++
T Consensus 902 ~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf 981 (1702)
T KOG0915|consen 902 DSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGF 981 (1702)
T ss_pred HHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhch
Confidence 01112111 2334432 3556788888888
Q ss_pred HHHHhhcCh--HHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCC---CCHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 010290 111 CRIGSQMRE--QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPS---APEALKTELRTIYRQLCQDDMPMVRRSAAT 185 (513)
Q Consensus 111 ~~l~~~~~~--~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~---~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~ 185 (513)
+.+++.-.. +.....++|.+.++.-|++..++.+...+...+... ..++|.++++.-++..+.+..|+||+++|-
T Consensus 982 ~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReascl 1061 (1702)
T KOG0915|consen 982 GAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCL 1061 (1702)
T ss_pred HHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 888876533 223445888888899999999999988888887754 344488999999999999999999999999
Q ss_pred hHHHHHHHhhhhhhHH---HHHHHHHHhhhccchhHHHHHHHHHHHhhccC---C-------hhhhhhhHHHHHHH-hcC
Q 010290 186 NLGKFAATVEAAHLKS---EIMSIFEELTQDDQDSVRLLAVEGCGALGKLL---E-------PQDCVAHILPVIVN-FSQ 251 (513)
Q Consensus 186 ~l~~l~~~~~~~~~~~---~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~---~-------~~~~~~~l~~~l~~-~~~ 251 (513)
+|..+.+.-+.+.+.+ .++..+.+...|-.+.||.+|-.+...+++.+ . .....+.++|++.. ..-
T Consensus 1062 AL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim 1141 (1702)
T KOG0915|consen 1062 ALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM 1141 (1702)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc
Confidence 9999987644444433 44445555667888899998866655555432 2 13455668888765 333
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCcHHH-------------------HHHHHHh------H
Q 010290 252 DKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEV-------------------RIAAAGK------V 304 (513)
Q Consensus 252 d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~d~~~~v-------------------r~~a~~~------l 304 (513)
++.+.||+.++..+..+++..|... +..+++|.+++....-++.| |..++++ +
T Consensus 1142 s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi 1221 (1702)
T KOG0915|consen 1142 SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETI 1221 (1702)
T ss_pred cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHH
Confidence 7788899999999999999888743 44688999888776655443 3333322 2
Q ss_pred HHHHhhhChHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHHhchhhCHHH--HHHhHHHHHHHhcCCCChHHHHHHHHH
Q 010290 305 TKICRILNPELAIQHILPCVKELSS-DSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISK 381 (513)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~ 381 (513)
+.++..++. ...++++|.+.+++. .-+-..|.+++..+..++..+|.+. +..+++..++..++|.++.+|.+.+.+
T Consensus 1222 ~~ci~~iD~-~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsA 1300 (1702)
T KOG0915|consen 1222 NKCINYIDI-SVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASA 1300 (1702)
T ss_pred HHHHHhhhH-HHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHH
Confidence 222222222 345677888877764 3355677788888888888888754 347899999999999999999999999
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhCh--hhHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010290 382 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLKDKVYSIRDAAANN 459 (513)
Q Consensus 382 l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~--~~~~~~~~~~l~~~l~d~~~~VR~~a~~~ 459 (513)
.|.+...-..+.....+-..+..++.+.+. .+..++..+..++..... ..+.+.++|.++-...+...+. ...
T Consensus 1301 mG~L~k~Ss~dq~qKLie~~l~~~l~k~es-~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~----q~L 1375 (1702)
T KOG0915|consen 1301 MGYLAKFSSPDQMQKLIETLLADLLGKDES-LKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKAN----QEL 1375 (1702)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHhccCCC-ccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHH----HHH
Confidence 999998776666644444444455544332 225555555554443221 1234568888877666552221 222
Q ss_pred HHHHHHHh--Chh-----hHhhhhHHHHHhhhcCcchHHH-HHHHHHHHhcc
Q 010290 460 VKRLAEEF--GPD-----WAMQHIVPQVALIKSSRNLVLN-SVLSLLKNAGI 503 (513)
Q Consensus 460 l~~l~~~~--~~~-----~~~~~i~~~L~~~~~~~~~~~r-~~~~~~~~i~~ 503 (513)
+.++...+ |+. +..+.+.+......++..|..| ++++++..++.
T Consensus 1376 w~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~ 1427 (1702)
T KOG0915|consen 1376 WNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAE 1427 (1702)
T ss_pred HHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcc
Confidence 22222222 111 1123444444455666667666 66666666554
No 34
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.71 E-value=2.4e-16 Score=157.05 Aligned_cols=300 Identities=21% Similarity=0.235 Sum_probs=210.6
Q ss_pred chHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcCh------HHHHhhHHHHHHHh
Q 010290 60 DDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE------QDVVEHFIPLVKRL 133 (513)
Q Consensus 60 ~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~------~~~~~~~~~~l~~l 133 (513)
..+.+..|...|..++.+...+...+-++|++..+..|....||..|+.++..+...+.+ ..+.++++|.+..+
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l 515 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL 515 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh
Confidence 455666777777777777766667777777777777777777777777777776655422 34556677777777
Q ss_pred hcC-CCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHH--HcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHh
Q 010290 134 AAG-EWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQ--LCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEEL 210 (513)
Q Consensus 134 ~~d-~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~--l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l 210 (513)
..| ....+|.+-+.+++.++.....- -++-..+.. +.++++.+ ..+..-..-+.......+-.....+
T Consensus 516 ~~d~~~~~vRiayAsnla~LA~tA~rF--le~~q~~~~~g~~n~~nse-------t~~~~~~~~~~~~L~~~V~~~v~sL 586 (1431)
T KOG1240|consen 516 LNDSSAQIVRIAYASNLAQLAKTAYRF--LELTQELRQAGMLNDPNSE-------TAPEQNYNTELQALHHTVEQMVSSL 586 (1431)
T ss_pred hccCccceehhhHHhhHHHHHHHHHHH--HHHHHHHHhcccccCcccc-------cccccccchHHHHHHHHHHHHHHHH
Confidence 777 55667777777766655432111 001111111 23344332 0000000000011222344456678
Q ss_pred hhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC
Q 010290 211 TQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLR 290 (513)
Q Consensus 211 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~ 290 (513)
+.|+.+.||.+-++.+..++.++|++...+.+++++...++|.+|..|.+..+.+..++-.+|.....+.++|.+.+.+.
T Consensus 587 lsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~lt 666 (1431)
T KOG1240|consen 587 LSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLT 666 (1431)
T ss_pred HcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhcc
Confidence 89999999999999999999999998777889999999999999999999998888887777877667889999999999
Q ss_pred CCcHHHHHHHHHhHHHHHhhhC-hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcC
Q 010290 291 DNEAEVRIAAAGKVTKICRILN-PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK 368 (513)
Q Consensus 291 d~~~~vr~~a~~~l~~~~~~~~-~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 368 (513)
|.++.|-..|+.++..+++.-- .....-+++.....++-+++-.+|.+++..+..++..++.....-.+.|.+-.++.
T Consensus 667 D~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 667 DGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred CcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 9999999999999999998521 12233455566667778999999999999999999998877665556666665554
No 35
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=2.6e-14 Score=134.08 Aligned_cols=344 Identities=15% Similarity=0.157 Sum_probs=245.7
Q ss_pred HHHHHHHHHHHHcC-CCchHHHHHHHHhHHHHHHHhhh---hhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCh
Q 010290 160 LKTELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 235 (513)
Q Consensus 160 ~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (513)
....+++.+.+.+. +.++.++..++++|..++..-.. .......+|.|..++..+++.|+.-|+.+|++++-.-+.
T Consensus 106 i~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~ 185 (514)
T KOG0166|consen 106 IQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD 185 (514)
T ss_pred HHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH
Confidence 44567788887775 66799999999999999874332 123345788899999999999999999999988865332
Q ss_pred ---hhhhhhHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHhCCCc---cccchHHHHHHhcCCCcHHHHHHHHHhHHHHH
Q 010290 236 ---QDCVAHILPVIVNFSQDKSW-RVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKIC 308 (513)
Q Consensus 236 ---~~~~~~l~~~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~~~~---~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~ 308 (513)
-.....+++.+..++..... ...+.+.++|.+++..-.+.. ....++|.+..++.+.|++|..-|+++++.+.
T Consensus 186 ~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 186 CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 11223356666666665544 677788899999997643221 13579999999999999999999999999998
Q ss_pred hhhChH---HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHH---HHHhHHHHHHHhcC-CCChHHHHHHHHH
Q 010290 309 RILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA---TIEQLLPIFLSLLK-DEFPDVRLNIISK 381 (513)
Q Consensus 309 ~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~-d~~~~vr~~a~~~ 381 (513)
..-... .+...++|.+..++.+++..++..++++++.++..-+... .....+|.+..++. .+...+|..|+++
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~ 345 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT 345 (514)
T ss_pred cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence 753221 2334678999999999999999999999999876433221 23568899999998 5556699999999
Q ss_pred HHHhhhhhhhh---hhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhH----HHHHHHHHHHHhcCchhHHHH
Q 010290 382 LDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQWLKDKVYSIRD 454 (513)
Q Consensus 382 l~~i~~~~~~~---~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~----~~~~~~~l~~~l~d~~~~VR~ 454 (513)
+..|...-... .+...++|.+..+++..+++.|..|+++++.+......+.. ...+++.+..+|.-++..+-.
T Consensus 346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~ 425 (514)
T KOG0166|consen 346 ISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIIL 425 (514)
T ss_pred HHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHH
Confidence 99997621111 13458899999999999999999999999999877554431 233677777777666666677
Q ss_pred HHHHHHHHHHHHhChhhH------h-----hhhHHHHHhhhcCcc-hHHHHHHHHHHHhcc
Q 010290 455 AAANNVKRLAEEFGPDWA------M-----QHIVPQVALIKSSRN-LVLNSVLSLLKNAGI 503 (513)
Q Consensus 455 ~a~~~l~~l~~~~~~~~~------~-----~~i~~~L~~~~~~~~-~~~r~~~~~~~~i~~ 503 (513)
.++.++..|.+.-..... . ..-+..+..+..+.+ -++..+.++++..-.
T Consensus 426 v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~ 486 (514)
T KOG0166|consen 426 VALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFS 486 (514)
T ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 777777776654221110 0 223344444554444 677777777776544
No 36
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=2.5e-14 Score=134.19 Aligned_cols=335 Identities=15% Similarity=0.156 Sum_probs=248.4
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHHhC-h---Hhhhhhhhhhhhh-c-cCCchHHHHHHHHHhhcccccccCc---
Q 010290 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALG-E---ERTRKELIPFLSE-N-NDDDDEVLLAMAEELGVFIPYVGGL--- 81 (513)
Q Consensus 11 i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~-~---~~~~~~l~~~l~~-~-~~~~~~vr~~~~~~l~~~~~~~~~~--- 81 (513)
...++..+.|+|+..+..+...+-.+..... | +-+..-++|.+.+ + .++++.++..+|.+|.+++......
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 5678888999999999999887766654332 1 1234467888888 4 4678999999999999999843321
Q ss_pred hhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcCh--H-HHHhh-HHHHHHHhhcCCCcchhhhHHhhhHhhcCCCC
Q 010290 82 EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE--Q-DVVEH-FIPLVKRLAAGEWFTARVSSCGLFHVAYPSAP 157 (513)
Q Consensus 82 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--~-~~~~~-~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~ 157 (513)
......+|+|..++.+++..||+.|+-+|+.++..-+. + .+... +.|++..+..+........+...+..+++.-.
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 12345688999999999999999999999999886432 1 12222 34445444444444566678888888887663
Q ss_pred HH----HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh---hhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhh
Q 010290 158 EA----LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALG 230 (513)
Q Consensus 158 ~~----~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~ 230 (513)
+. ....++|.+..++.+.+++|...+|.++..+...-.+ -.....+.|.+..++.+.+..++..|++++++++
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV 307 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence 32 6788999999999999999999999999998864432 1234467889999999999999999999999977
Q ss_pred ccCChhh---hhhhHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCC-----ccccchHHHHHHhcCCCcHHHHHHHH
Q 010290 231 KLLEPQD---CVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPE-----PTRSDVVPAYVRLLRDNEAEVRIAAA 301 (513)
Q Consensus 231 ~~~~~~~---~~~~l~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~-----~~~~~ll~~l~~~l~d~~~~vr~~a~ 301 (513)
...+.++ ....++|++..++. ++...+|+.+++++++|+. |.. .....++|.+..+++..+..+|+.|+
T Consensus 308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAa 385 (514)
T KOG0166|consen 308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAA 385 (514)
T ss_pred eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHH
Confidence 6654432 23348999999887 6677799999999999986 332 12357999999999999999999999
Q ss_pred HhHHHHHhhhChHH----HHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhc
Q 010290 302 GKVTKICRILNPEL----AIQHILPCVKELSSDSSQHVRSALATVIMGMA 347 (513)
Q Consensus 302 ~~l~~~~~~~~~~~----~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~ 347 (513)
++++.++..-.++. +...+++.+..++.-.+.++-..++..+..+-
T Consensus 386 waIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil 435 (514)
T KOG0166|consen 386 WAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENIL 435 (514)
T ss_pred HHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHH
Confidence 99999887644432 23345666777776666666555666655554
No 37
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.7e-12 Score=124.84 Aligned_cols=383 Identities=17% Similarity=0.202 Sum_probs=240.7
Q ss_pred HHHHHHhcCccHHHHHHHhhcHHHH-HHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhhH
Q 010290 12 AVLIDELKNDDIQLRLNSIRRLSTI-ARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLP 89 (513)
Q Consensus 12 ~~l~~~l~~~d~~~r~~a~~~l~~i-~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~ 89 (513)
..+.+.|.|........|++.+..+ ++ |. . ...+.|-+.+ +...+.+|++-+-..|-.++..-. +..-.=++
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~--G~-d-vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqp--dLALLSIn 111 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAK--GK-D-VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQP--DLALLSIN 111 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhc--CC-c-HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCC--CceeeeHH
Confidence 4566777788777888898877544 33 22 2 4566676666 788999999999999888877322 21212256
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHH
Q 010290 90 PLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYR 169 (513)
Q Consensus 90 ~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~ 169 (513)
.++.-+.|+|+.+|..|++++..+-- ..+...++-.+.++..|.++.+|..|+-++..++..-+++ +.++.+.+.
T Consensus 112 tfQk~L~DpN~LiRasALRvlSsIRv----p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~-k~qL~e~I~ 186 (968)
T KOG1060|consen 112 TFQKALKDPNQLIRASALRVLSSIRV----PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ-KDQLEEVIK 186 (968)
T ss_pred HHHhhhcCCcHHHHHHHHHHHHhcch----hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhh-HHHHHHHHH
Confidence 67888999999999999999887632 3345566667788899999999999999999888765544 459999999
Q ss_pred HHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHH---hhhccchhHHHHHHHHHHHhhccC-Ch----------
Q 010290 170 QLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEE---LTQDDQDSVRLLAVEGCGALGKLL-EP---------- 235 (513)
Q Consensus 170 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~---l~~d~~~~vr~~a~~~l~~l~~~~-~~---------- 235 (513)
.++.|.++.|--+|+-++..+|.. ....+.+.+.+ ++.|-++.=+...+..|.+-+... +.
T Consensus 187 ~LLaD~splVvgsAv~AF~evCPe-----rldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~ 261 (968)
T KOG1060|consen 187 KLLADRSPLVVGSAVMAFEEVCPE-----RLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLED 261 (968)
T ss_pred HHhcCCCCcchhHHHHHHHHhchh-----HHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCcccccccccc
Confidence 999999999999888888887742 23334343333 344555555556666666555431 11
Q ss_pred --------------------hhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHH
Q 010290 236 --------------------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE 295 (513)
Q Consensus 236 --------------------~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~ 295 (513)
+.-...++.....++.+.++.|-.++++.+..++... ....+...++++|..+ .+
T Consensus 262 n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~----~~~~i~kaLvrLLrs~-~~ 336 (968)
T KOG1060|consen 262 NGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN----QVTKIAKALVRLLRSN-RE 336 (968)
T ss_pred CcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH----HHHHHHHHHHHHHhcC-Cc
Confidence 0111235666677888888999999998888887432 1245677777777755 47
Q ss_pred HHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChH
Q 010290 296 VRIAAAGKVTKICRILNPELAIQHILPCVKELS--SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPD 373 (513)
Q Consensus 296 vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~--~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~ 373 (513)
++...++++..++..- + .-+.|++..+. ......++.-=+..|..++.... ...+++-+....++.+..
T Consensus 337 vqyvvL~nIa~~s~~~-~----~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esn----i~~ILrE~q~YI~s~d~~ 407 (968)
T KOG1060|consen 337 VQYVVLQNIATISIKR-P----TLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESN----ISEILRELQTYIKSSDRS 407 (968)
T ss_pred chhhhHHHHHHHHhcc-h----hhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhcc----HHHHHHHHHHHHhcCchh
Confidence 7877888888776531 1 12234443332 11223334444444444443222 234455555555555555
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 010290 374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426 (513)
Q Consensus 374 vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~ 426 (513)
+-..++.++|.++...+. +.+.++.-|..++.+.+..|-..++..+..+.+
T Consensus 408 faa~aV~AiGrCA~~~~s--v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq 458 (968)
T KOG1060|consen 408 FAAAAVKAIGRCASRIGS--VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQ 458 (968)
T ss_pred HHHHHHHHHHHHHHhhCc--hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHh
Confidence 555555555555544332 234445555555554444444444444444443
No 38
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=9.6e-14 Score=121.79 Aligned_cols=376 Identities=16% Similarity=0.130 Sum_probs=256.7
Q ss_pred hhhhhhccCCchHHHHHHHHHhhcccccccCchhhh---hhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChH-HHHh-
Q 010290 50 IPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYAN---VLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ-DVVE- 124 (513)
Q Consensus 50 ~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~---~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~-~~~~- 124 (513)
-|.+.-+.+.++.++..++..+|+++-..+..-..- .+-+++.++.+|. ..||..|+.|+..+++.-+.. .+..
T Consensus 88 epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~d~nk~kiA~s 166 (550)
T KOG4224|consen 88 EPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATFDSNKVKIARS 166 (550)
T ss_pred hHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhccccchhhhhhc
Confidence 343333678899999999999999887665433332 3344666666554 557889999999998873221 2221
Q ss_pred -hHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH---HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhh---
Q 010290 125 -HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA--- 197 (513)
Q Consensus 125 -~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--- 197 (513)
.+.|+.. +.+.++.++|..+..++..+...-... .-..-+|.+..++...++.||..++.+++.++-.-...
T Consensus 167 GaL~pltr-LakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~L 245 (550)
T KOG4224|consen 167 GALEPLTR-LAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKIL 245 (550)
T ss_pred cchhhhHh-hcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence 2455554 888899999998888877654322111 22334689999999999999999999999987432211
Q ss_pred -hhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCC--hhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC
Q 010290 198 -HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE--PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP 274 (513)
Q Consensus 198 -~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~ 274 (513)
...+.++|.+..++.|+++.++..|..++..++.-.. .+.....-+|.+.++++++.-..-.+.+.++.+++-.-+.
T Consensus 246 aqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplN 325 (550)
T KOG4224|consen 246 AQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLN 325 (550)
T ss_pred HhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCc
Confidence 1234589999999999999999999999999886432 2223344689999999888766666666677777655444
Q ss_pred Ccc--ccchHHHHHHhcCCCc-HHHHHHHHHhHHHHHhhhCh---HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhc-
Q 010290 275 EPT--RSDVVPAYVRLLRDNE-AEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMA- 347 (513)
Q Consensus 275 ~~~--~~~ll~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~- 347 (513)
+.. ..-++..+.+++.-.+ .+++..|...|-.+...... ..+...-+|.+..++-|....+|...-.++..++
T Consensus 326 e~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 326 EVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL 405 (550)
T ss_pred ccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 332 2346777788876554 45888888888877653322 1233455788888888888888777766666655
Q ss_pred -hhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhh--------hhhhhHHHHHHHhhcCCChhHHHHHH
Q 010290 348 -PILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--------LLSQSLLPAIVELAEDRHWRVRLAII 418 (513)
Q Consensus 348 -~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--------~~~~~l~~~l~~l~~~~~~~vR~~~~ 418 (513)
......+....++|.++.++.+...+||-+++.+|..+++....- .-.+.+-..+..++.+....+|..+.
T Consensus 406 ~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~ 485 (550)
T KOG4224|consen 406 NDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIAR 485 (550)
T ss_pred ccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHH
Confidence 333334445678999999999999999999999999998754310 00134445555555555566666666
Q ss_pred HHHHHHHHH
Q 010290 419 EYIPLLASQ 427 (513)
Q Consensus 419 ~~l~~l~~~ 427 (513)
+.+..+...
T Consensus 486 wTI~qLle~ 494 (550)
T KOG4224|consen 486 WTIQQLLED 494 (550)
T ss_pred HHHHHHHHh
Confidence 666555543
No 39
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.6e-10 Score=115.45 Aligned_cols=452 Identities=16% Similarity=0.155 Sum_probs=275.5
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-cc-CCchHHHHHHHHHhhccccc-ccCchhhhhh
Q 010290 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NN-DDDDEVLLAMAEELGVFIPY-VGGLEYANVL 87 (513)
Q Consensus 11 i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~-~~~~~vr~~~~~~l~~~~~~-~~~~~~~~~l 87 (513)
+..+++.+.+.|..+|+.|++.+..+...++++ ...+.+.-+.+ .. -+++.....++-+|++++.. +--......+
T Consensus 343 ie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dV 421 (1133)
T KOG1943|consen 343 IEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDV 421 (1133)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHccCcHH-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 556778889999999999999999999888643 23344444433 11 23566778899999988861 1113345677
Q ss_pred hHHHHHhhc--------cchhHHHHHHHHHHHHHHhhcChHHHHhh---HHHH-HHHhhcCCCcchhhhHHhhhHhhcCC
Q 010290 88 LPPLETLCT--------VEETCVRDKAVESLCRIGSQMREQDVVEH---FIPL-VKRLAAGEWFTARVSSCGLFHVAYPS 155 (513)
Q Consensus 88 ~~~l~~l~~--------~~~~~vR~~a~~~l~~l~~~~~~~~~~~~---~~~~-l~~l~~d~~~~~R~~~~~~l~~~~~~ 155 (513)
+|++.+-+. .....||.+|+..+..++...++..+++. +.+. +....=|.+...|.+|..++...+..
T Consensus 422 vplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR 501 (1133)
T KOG1943|consen 422 VPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGR 501 (1133)
T ss_pred HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhcc
Confidence 787765442 22457999999999999999988776663 2232 23445588899999999888766543
Q ss_pred CCH-----H--------------------------HHHHHHHHHHHHc----CCCchHHHHHHHHhHHHHHHHhhhhhhH
Q 010290 156 APE-----A--------------------------LKTELRTIYRQLC----QDDMPMVRRSAATNLGKFAATVEAAHLK 200 (513)
Q Consensus 156 ~~~-----~--------------------------~~~~l~~~l~~l~----~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 200 (513)
.+. + +-...-+.+..++ .+=+..+|..++.+|..+....++ ...
T Consensus 502 ~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk-~~a 580 (1133)
T KOG1943|consen 502 QGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPK-YLA 580 (1133)
T ss_pred CCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHH-hhc
Confidence 211 0 0011222333333 344778999999999998776553 334
Q ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCh---------hhhhhh---HHHHH-HHhcCCC-CHHHHHHHHHHHH
Q 010290 201 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---------QDCVAH---ILPVI-VNFSQDK-SWRVRYMVANQLY 266 (513)
Q Consensus 201 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---------~~~~~~---l~~~l-~~~~~d~-~~~vr~~~~~~l~ 266 (513)
...+|.+.......+...|.....+.+.+...+.. +..... ++|.+ .....-. ....|.+.+..+.
T Consensus 581 ~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie 660 (1133)
T KOG1943|consen 581 DYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIE 660 (1133)
T ss_pred ccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHH
Confidence 34444444445555667777776666655532111 111111 12211 1111111 2345666666666
Q ss_pred HHHHHhCCC----ccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhC--hHHHHHhhhh-hhhhhcCCCcHHHHHHH
Q 010290 267 ELCEAVGPE----PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN--PELAIQHILP-CVKELSSDSSQHVRSAL 339 (513)
Q Consensus 267 ~l~~~~~~~----~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~--~~~~~~~l~~-~l~~~~~d~~~~vr~~~ 339 (513)
.+... ... ...+.....+.+.+.+++ .+|.+|..+++.++..+- .+.....++. .+..+-+..+.++|...
T Consensus 661 ~~s~s-~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~ 738 (1133)
T KOG1943|consen 661 QLSLS-KDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGL 738 (1133)
T ss_pred Hhhhc-cchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHH
Confidence 55432 111 112233444555555666 899999999999987652 1222222333 33444444578999998
Q ss_pred HHHHHHhchhhCHHHHHHhHHHHHHHhcC-CCChHHHHHHHHHHHHhhhhhhh-------hhhhhhHHHHHHHhhcCC--
Q 010290 340 ATVIMGMAPILGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGI-------DLLSQSLLPAIVELAEDR-- 409 (513)
Q Consensus 340 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~i~~~~~~-------~~~~~~l~~~l~~l~~~~-- 409 (513)
..+++.+....-.....+.+...++...- |..++-|...+.++..+++.++. +++.+.++..+.+...|.
T Consensus 739 ~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rG 818 (1133)
T KOG1943|consen 739 ILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRG 818 (1133)
T ss_pred HHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCc
Confidence 88888776433222223444444444433 33788999999999999988772 234455666666655553
Q ss_pred --ChhHHHHHHHHHHHHHHHhC-hhhHHHH----HHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 010290 410 --HWRVRLAIIEYIPLLASQLG-VGFFDDK----LGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (513)
Q Consensus 410 --~~~vR~~~~~~l~~l~~~~~-~~~~~~~----~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~ 466 (513)
..-||++|+.++..+...+. ++.+.++ ++-.+++-.-|+....|+.|+.++.++...
T Consensus 819 DVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 819 DVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred cHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence 24599999999998877655 4444433 334444455677778899999998887765
No 40
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.54 E-value=5.5e-11 Score=117.13 Aligned_cols=448 Identities=15% Similarity=0.125 Sum_probs=269.3
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHHhC-hHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhh
Q 010290 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALG-EERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLL 88 (513)
Q Consensus 11 i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~-~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~ 88 (513)
+..++..|... ..|.+++..+........ -+.... +.+.+ +.+.+.+.-..++..|..+..............
T Consensus 5 ~~~~l~~l~~~--~~~~~~L~~l~~~~~~~~~l~~~~~---~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~ 79 (503)
T PF10508_consen 5 INELLEELSSK--AERLEALPELKTELSSSPFLERLPE---PVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQ 79 (503)
T ss_pred HHHHHHHHhcc--cchHHHHHHHHHHHhhhhHHHhchH---HHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 45566666555 345566655554433222 111111 22434 455566666778888887777665555577888
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHhhcCh--H-HHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH---HHH
Q 010290 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRE--Q-DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA---LKT 162 (513)
Q Consensus 89 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--~-~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~---~~~ 162 (513)
+.+...+.++++.||..++..++.++..-+. + .....+++.+..+..+++..+...|+.++..+++.-... ...
T Consensus 80 ~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~ 159 (503)
T PF10508_consen 80 PFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDS 159 (503)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCc
Confidence 9999999999999999999998888765322 1 122448899999999999999999999999998753322 122
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh---hhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhh-
Q 010290 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC- 238 (513)
Q Consensus 163 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~- 238 (513)
.+...+..++..++..+|..+.+.+..+++.-.. ....+.+++.+...+.+++.-+|..+++.+..++..-..-.+
T Consensus 160 ~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL 239 (503)
T PF10508_consen 160 NLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYL 239 (503)
T ss_pred chHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHH
Confidence 3377888888877889999999998888765332 112234788888888888888999999999999984222121
Q ss_pred -hhhHHHHHHHhcC----CC-CHH-HHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHh
Q 010290 239 -VAHILPVIVNFSQ----DK-SWR-VRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR 309 (513)
Q Consensus 239 -~~~l~~~l~~~~~----d~-~~~-vr~~~~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~ 309 (513)
...+++.+.+.+. |+ ... .--..+..++.++...+... ..+.++..+...+++.++..+..|+.++|.++.
T Consensus 240 ~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs 319 (503)
T PF10508_consen 240 EQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGS 319 (503)
T ss_pred HhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC
Confidence 1225555555543 33 111 11233456666665411111 124566666777888999999999999999986
Q ss_pred hhChHHHH--------HhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHH
Q 010290 310 ILNPELAI--------QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 381 (513)
Q Consensus 310 ~~~~~~~~--------~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 381 (513)
........ ..++..+..........+|..++.+++.+....... ..+.+. ..
T Consensus 320 t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~-~~~~i~-------------------~~ 379 (503)
T PF10508_consen 320 TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDR-QDNDIL-------------------SI 379 (503)
T ss_pred CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCC-chHHHH-------------------HH
Confidence 54222111 223333334444555667777777776664322110 011111 11
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh-ChhhHH--HHHHHHHHHHhcCchhHHHHHHHH
Q 010290 382 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVGFFD--DKLGALCMQWLKDKVYSIRDAAAN 458 (513)
Q Consensus 382 l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~-~~~~~~--~~~~~~l~~~l~d~~~~VR~~a~~ 458 (513)
...+.+.++.... ...+..+++.+-.++|.++...+..++... |-..+. +.++.+++.--.+++.+.++.=..
T Consensus 380 ~~~w~~~~~~~~~----~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ 455 (503)
T PF10508_consen 380 TESWYESLSGSPL----SNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYD 455 (503)
T ss_pred HHHHHHHhcCCch----HHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHH
Confidence 1222222222211 115666777777888888888887777541 222111 235555555556667777777666
Q ss_pred HHHHHHHHhC---hhhHhhhhHHHHHhhhcCc
Q 010290 459 NVKRLAEEFG---PDWAMQHIVPQVALIKSSR 487 (513)
Q Consensus 459 ~l~~l~~~~~---~~~~~~~i~~~L~~~~~~~ 487 (513)
.+..|.+... ..+..+.++..|....+..
T Consensus 456 ii~~l~~~~~~~~~~~~~~~~~~kL~~yv~eG 487 (503)
T PF10508_consen 456 IIKALAKSSTNASSVFDDPEYLGKLQEYVREG 487 (503)
T ss_pred HHHHHHhcccchhhcCCCHHHHHHHHHHHHcC
Confidence 6666664433 1111234444666655443
No 41
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=2.4e-11 Score=117.64 Aligned_cols=451 Identities=14% Similarity=0.146 Sum_probs=291.9
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhhH
Q 010290 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLP 89 (513)
Q Consensus 11 i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~ 89 (513)
+..+...+.+.-+..|+.|++.+..- -++|.+ ...+.|-+.+ +...+-+.++.+-..+...+.. .........+
T Consensus 15 i~elks~l~s~~~~kr~~a~kkvIa~-Mt~G~D--vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~--~P~~a~~avn 89 (734)
T KOG1061|consen 15 IPELKSQLNSQSKEKRKDAVKKVIAY-MTVGKD--VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKG--KPDLAILAVN 89 (734)
T ss_pred chHHHHHhhhhhhhhHHHHHHHHHhc-CccCcc--hHhhhHHHHhhcccCCchHHHHHHHHHHHhhcc--CchHHHhhhh
Confidence 55666777666668888887665432 334432 4566666666 5556788888888888777763 2233344455
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH-HHHHHHHHH
Q 010290 90 PLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA-LKTELRTIY 168 (513)
Q Consensus 90 ~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~-~~~~l~~~l 168 (513)
.+..-..|+++.+|..|+..++.+ .-+.+..++...+....+|+++.+|..++.+...+...-++. ....+++.+
T Consensus 90 t~~kD~~d~np~iR~lAlrtm~~l----~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L 165 (734)
T KOG1061|consen 90 TFLKDCEDPNPLIRALALRTMGCL----RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDAL 165 (734)
T ss_pred hhhccCCCCCHHHHHHHhhceeeE----eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHH
Confidence 666666889999999999887765 334556677777778889999999999999888777655444 556788999
Q ss_pred HHHcCCCchHHHHHHHHhHHHHHHHhhhhh---hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhh-hhhhHHH
Q 010290 169 RQLCQDDMPMVRRSAATNLGKFAATVEAAH---LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD-CVAHILP 244 (513)
Q Consensus 169 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~ 244 (513)
..++.|.++.|-..|..++..+.+.-.... ....++..+.+.++.- .-..-+..+..++...+++. -...+..
T Consensus 166 ~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec---~EW~qi~IL~~l~~y~p~d~~ea~~i~~ 242 (734)
T KOG1061|consen 166 KDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNEC---TEWGQIFILDCLAEYVPKDSREAEDICE 242 (734)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHh---hhhhHHHHHHHHHhcCCCCchhHHHHHH
Confidence 999999999999999999999887653211 2223333333344433 33344555555566655543 2334666
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhCh---------
Q 010290 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--------- 313 (513)
Q Consensus 245 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--------- 313 (513)
.+...+.+.+..|..++.+.+-.....+.. .....++-|.+..++.... ++.-.|+.++..+....+.
T Consensus 243 r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~F 321 (734)
T KOG1061|consen 243 RLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVF 321 (734)
T ss_pred HhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHee
Confidence 666667777776766666666666554433 1112344444444444443 7777777766665553211
Q ss_pred -----------------------HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCC
Q 010290 314 -----------------------ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE 370 (513)
Q Consensus 314 -----------------------~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 370 (513)
+...+++++-+.....+.+...-+.++++++.++-..... +..++.++.+++-+
T Consensus 322 f~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLell~~~ 398 (734)
T KOG1061|consen 322 FCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLELLETK 398 (734)
T ss_pred eeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHHHhhc
Confidence 1223345555556666777777777888888887655443 56778888888766
Q ss_pred ChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcC-CChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCch
Q 010290 371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKV 449 (513)
Q Consensus 371 ~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~-~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~ 449 (513)
...|-..++..+..+...+... + +.+.+.+-..+.+ .+++.|.+.++.++.-+..+... ..++..+++-..|..
T Consensus 399 ~~yvvqE~~vvi~dilRkyP~~-~-~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a---~elL~~f~en~~dE~ 473 (734)
T KOG1061|consen 399 VDYVVQEAIVVIRDILRKYPNK-Y-ESVVAILCENLDSLQEPEAKAALIWILGEYAERIENA---LELLESFLENFKDET 473 (734)
T ss_pred ccceeeehhHHHHhhhhcCCCc-h-hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcH---HHHHHHHHhhcccch
Confidence 6556666666666666554432 1 4445544443333 35778999999999998887663 457888888889999
Q ss_pred hHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhh
Q 010290 450 YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIK 484 (513)
Q Consensus 450 ~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~ 484 (513)
.+|+...+.+.-+++-..+.+ .+..+..+....
T Consensus 474 ~~Vql~LLta~ik~Fl~~p~~--tq~~l~~vL~~~ 506 (734)
T KOG1061|consen 474 AEVQLELLTAAIKLFLKKPTE--TQELLQGVLPLA 506 (734)
T ss_pred HHHHHHHHHHHHHHHhcCCcc--HHHHHHHHHhhh
Confidence 999999888887776665542 245555555443
No 42
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.46 E-value=1.5e-10 Score=114.14 Aligned_cols=388 Identities=19% Similarity=0.216 Sum_probs=249.8
Q ss_pred HHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCc---hhhhhhh
Q 010290 13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGL---EYANVLL 88 (513)
Q Consensus 13 ~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~---~~~~~l~ 88 (513)
.+.+.|.+.+.+.=..+...|..+.....+........+++.. +.++++.||..++..++.++....+. -....++
T Consensus 42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 42 VLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELL 121 (503)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHH
Confidence 3667788777777677778888888888888777888899988 89999999999999998877643321 1235678
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHhhcChH-HH-HhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH----HHH
Q 010290 89 PPLETLCTVEETCVRDKAVESLCRIGSQMREQ-DV-VEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA----LKT 162 (513)
Q Consensus 89 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~-~~-~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~----~~~ 162 (513)
+.+...+.+++..|...|+.++..+++.-..- .+ .....+.+..+....+..+|..+..++..++..-++. ...
T Consensus 122 ~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~s 201 (503)
T PF10508_consen 122 PLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNS 201 (503)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhc
Confidence 88888899999999999999999999853221 11 2234667777777767788888888888887665554 223
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh-hhh-HHHHHHHHHHhhhccchhHHHH------HHHHHHHhhccCC
Q 010290 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-AHL-KSEIMSIFEELTQDDQDSVRLL------AVEGCGALGKLLE 234 (513)
Q Consensus 163 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~-~~~l~~~l~~l~~d~~~~vr~~------a~~~l~~l~~~~~ 234 (513)
.+++.+...++++|.-||..+++.+..++..-.. +.. ...+++.+..++.+...+-|.. .+...+.++.. .
T Consensus 202 gll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~ 280 (503)
T PF10508_consen 202 GLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-S 280 (503)
T ss_pred cHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-C
Confidence 4899999999999999999999999999973221 111 2235666666655432221222 23444555554 2
Q ss_pred hhhh---hhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC-Cc-------cccchHHHHHHhcCCCcHHHHHHHHHh
Q 010290 235 PQDC---VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EP-------TRSDVVPAYVRLLRDNEAEVRIAAAGK 303 (513)
Q Consensus 235 ~~~~---~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-~~-------~~~~ll~~l~~~l~d~~~~vr~~a~~~ 303 (513)
+..+ .+.++..+.+..++.+...+..+..++|.++..... .. ....++..+.........++|..++.+
T Consensus 281 ~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~a 360 (503)
T PF10508_consen 281 PQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHA 360 (503)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 2222 244666667777888899999999999999854321 11 112344555555666677888888888
Q ss_pred HHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHH
Q 010290 304 VTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 383 (513)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 383 (513)
++.+...... .-.+.+. .+.. .+...+ +..... ..+..+++.+.+++|.++...+.
T Consensus 361 l~~il~~~~~-~~~~~i~------------~~~~---~w~~~~----~~~~~~----~~l~~~~~qPF~elr~a~~~~l~ 416 (503)
T PF10508_consen 361 LASILTSGTD-RQDNDIL------------SITE---SWYESL----SGSPLS----NLLMSLLKQPFPELRCAAYRLLQ 416 (503)
T ss_pred HHHHHhcCCC-CchHHHH------------HHHH---HHHHHh----cCCchH----HHHHHHhcCCchHHHHHHHHHHH
Confidence 8888653221 0011111 1111 111222 222111 17788899999999999999999
Q ss_pred Hhhhhh-hhhhh--hhhHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 010290 384 QVNQVI-GIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (513)
Q Consensus 384 ~i~~~~-~~~~~--~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~ 425 (513)
.++..- |...+ .+.++..+..-..+.+...+.+=..++..++
T Consensus 417 ~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 417 ALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred HHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 998752 11111 1223333333223345555554444555554
No 43
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=8.9e-12 Score=109.63 Aligned_cols=373 Identities=14% Similarity=0.127 Sum_probs=258.4
Q ss_pred HHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhh---hhhhhhccCCchHHHHHHHHHhhcccccccCch---hhhhh
Q 010290 14 LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKEL---IPFLSENNDDDDEVLLAMAEELGVFIPYVGGLE---YANVL 87 (513)
Q Consensus 14 l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l---~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~---~~~~l 87 (513)
++-.++|.|+.++..|...+..++-.++......++ -+++.++..+..++|..+..++..++..-.... ....+
T Consensus 90 vl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL 169 (550)
T KOG4224|consen 90 VLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGAL 169 (550)
T ss_pred HHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccch
Confidence 344567999999999998888887666544333333 346777777888899999999998887522111 12233
Q ss_pred hHHHHHhhccchhHHHHHHHHHHHHHHhhcCh--HHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCC-CHH----H
Q 010290 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRE--QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSA-PEA----L 160 (513)
Q Consensus 88 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~-~~~----~ 160 (513)
.| +..+.+.++..||..+..++..+-..-.. .-...--+|++..+.+..+..+|+.++..++.+.-.- ... .
T Consensus 170 ~p-ltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqa 248 (550)
T KOG4224|consen 170 EP-LTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQA 248 (550)
T ss_pred hh-hHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhc
Confidence 44 44588889999999998888776543222 1122236899999999999999999999988765221 111 2
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHh--hhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhh
Q 010290 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATV--EAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 238 (513)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~ 238 (513)
.+.+++.+.+++.|+++.|+-.+..+|+.++..- ..+.....-+|.+.++++++.-..-.+.+.|+.+++-+-..+..
T Consensus 249 ep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~l 328 (550)
T KOG4224|consen 249 EPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVL 328 (550)
T ss_pred ccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccc
Confidence 3458999999999999999999999999998643 22344455689999999888766666777777666654333221
Q ss_pred h--hhHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhh-
Q 010290 239 V--AHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPE---PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL- 311 (513)
Q Consensus 239 ~--~~l~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~- 311 (513)
. ..++..+..++. .++..++..+...|-.++...... ....--+|.+..++-|...+||.....+++.+.-.-
T Consensus 329 I~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~ 408 (550)
T KOG4224|consen 329 IADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDN 408 (550)
T ss_pred eecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccc
Confidence 1 124555666554 345668888888898887643321 223457889999999999999988877777765432
Q ss_pred ChHH-HHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHH--------HHhHHHHHHHhcCCCChHHHHHHHHHH
Q 010290 312 NPEL-AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT--------IEQLLPIFLSLLKDEFPDVRLNIISKL 382 (513)
Q Consensus 312 ~~~~-~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--------~~~l~~~l~~~l~d~~~~vr~~a~~~l 382 (513)
..+. .-..++|.+..+..+.+..+|-.++.++..++.....-.- .+.+...+..++.+++..+|..+.+++
T Consensus 409 ~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI 488 (550)
T KOG4224|consen 409 DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTI 488 (550)
T ss_pred cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1222 2236788888888999999999999999988764332110 134556677777777777777777777
Q ss_pred HHhhh
Q 010290 383 DQVNQ 387 (513)
Q Consensus 383 ~~i~~ 387 (513)
..+.+
T Consensus 489 ~qLle 493 (550)
T KOG4224|consen 489 QQLLE 493 (550)
T ss_pred HHHHH
Confidence 76655
No 44
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=4.8e-10 Score=106.31 Aligned_cols=392 Identities=18% Similarity=0.138 Sum_probs=234.5
Q ss_pred ccCCchHHHHHHHHHhhcc-cccccCchhhhhhhHHH-HHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHH-HH
Q 010290 56 NNDDDDEVLLAMAEELGVF-IPYVGGLEYANVLLPPL-ETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLV-KR 132 (513)
Q Consensus 56 ~~~~~~~vr~~~~~~l~~~-~~~~~~~~~~~~l~~~l-~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l-~~ 132 (513)
..|.+++.|...+..++.+ +...++. ...|.-+. ..+-..-+..|-.....++-..+....+....-.++--. ..
T Consensus 88 ~fDs~~s~~~K~~~l~~~l~~~~~~~s--~d~I~~~~~~~lr~e~~~~vLa~~~~~l~~~g~~~~~~~~~i~l~~~~a~~ 165 (823)
T KOG2259|consen 88 IFDSDESSRKKLAILLGILEADFENGS--TDAISDYASLELRAECSDHVLAQYLDNLLAIGCPVCEEDIYILLLHGVAKV 165 (823)
T ss_pred hccccchhhhHHHHHhhHhhhhhccCc--hhHHHHHHHHhhcccchhHHHHHHHHHHHHhccCCCchhhHHHHHhhhHHH
Confidence 4577888888888888877 3322221 12222221 112233344444444444444444433322221111111 11
Q ss_pred hhcCCCcchhhhHHhhhHhhcCCCCHH--HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHh
Q 010290 133 LAAGEWFTARVSSCGLFHVAYPSAPEA--LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEEL 210 (513)
Q Consensus 133 l~~d~~~~~R~~~~~~l~~~~~~~~~~--~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l 210 (513)
...+.+...|..+......+...-+.. ....+...+..+..|.+++||..|++++-.+.+.+ .....+.....+.
T Consensus 166 ~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~---kL~~~~Y~~A~~~ 242 (823)
T KOG2259|consen 166 RSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF---KLSKACYSRAVKH 242 (823)
T ss_pred hhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc---cccHHHHHHHHHH
Confidence 122334445554444333333221111 34555666888899999999999999998888732 3445677778889
Q ss_pred hhccchhHHHHHHHHHHHhhccCC-h-------hhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchH
Q 010290 211 TQDDQDSVRLLAVEGCGALGKLLE-P-------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV 282 (513)
Q Consensus 211 ~~d~~~~vr~~a~~~l~~l~~~~~-~-------~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll 282 (513)
+.|+++.||.+|++.+..+++..+ + ....+..+..+.....|.+|.||..+++.||.+.+. .++++
T Consensus 243 lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v------See~i 316 (823)
T KOG2259|consen 243 LSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV------SEEII 316 (823)
T ss_pred hcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh------HHHHH
Confidence 999999999999999988887763 1 233445677777888999999999999999998754 22332
Q ss_pred -HHHHH-hcCC-CcHHH---HHHHHHhHHHHHh------hhChHH--------HHHhhhhhhhhhcCCCcHHHHHHHHHH
Q 010290 283 -PAYVR-LLRD-NEAEV---RIAAAGKVTKICR------ILNPEL--------AIQHILPCVKELSSDSSQHVRSALATV 342 (513)
Q Consensus 283 -~~l~~-~l~d-~~~~v---r~~a~~~l~~~~~------~~~~~~--------~~~~l~~~l~~~~~d~~~~vr~~~~~~ 342 (513)
+.+-+ ++.+ ..+.. |-.+..+=|.+.. ..+.+. +.......+...++|.-..||.+++..
T Consensus 317 ~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~S 396 (823)
T KOG2259|consen 317 QQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVAS 396 (823)
T ss_pred HHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHH
Confidence 22221 1110 00000 0011111111111 001111 111123445666789999999999999
Q ss_pred HHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHH
Q 010290 343 IMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 422 (513)
Q Consensus 343 l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~ 422 (513)
++.++.... .+...-+..+.++++|+...||..|+.+|..|...+. +.+..++.+...+.|.+..+|.+.-+.+.
T Consensus 397 l~~La~ssP--~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 397 LCSLATSSP--GFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLK 471 (823)
T ss_pred HHHHHcCCC--CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999985333 2455678899999999999999999999999988743 44778899999999999999998887775
Q ss_pred HHHHHhChhhH---HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh
Q 010290 423 LLASQLGVGFF---DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP 469 (513)
Q Consensus 423 ~l~~~~~~~~~---~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~ 469 (513)
.. +....+.+ ..+++..+-+.-+| |.....++++|.++.+.
T Consensus 472 ~~-~~~d~~~i~m~v~~lL~~L~kyPqD-----rd~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 472 NA-RVSDLECIDMCVAHLLKNLGKYPQD-----RDEILRCMGRIGQNHRR 515 (823)
T ss_pred hc-CCCcHHHHHHHHHHHHHHhhhCCCC-----cHHHHHHHHHHhccChh
Confidence 43 11111111 12233333333344 55677888888877664
No 45
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.39 E-value=1.6e-11 Score=107.05 Aligned_cols=336 Identities=14% Similarity=0.105 Sum_probs=224.9
Q ss_pred HHHHHHcCCCchHHHHHHHHhHHHHHHHh-hh---hhhHHHHHHHHHHhh-hccchhHHHHHHHHHHHhhccCChhhh--
Q 010290 166 TIYRQLCQDDMPMVRRSAATNLGKFAATV-EA---AHLKSEIMSIFEELT-QDDQDSVRLLAVEGCGALGKLLEPQDC-- 238 (513)
Q Consensus 166 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~-~~---~~~~~~l~~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~~~~-- 238 (513)
|.+.+.+.+.+.+-+..+...+..+.+.- .| ......++|-|.+++ +.+.+-.+..|..++.+++.....++.
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 44444344444454544444444443321 11 123345778888888 455566777899999999987665432
Q ss_pred -hhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCCcH--HHHHHHHHhHHHHHhhhC
Q 010290 239 -VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRDNEA--EVRIAAAGKVTKICRILN 312 (513)
Q Consensus 239 -~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~ll~~l~~~l~d~~~--~vr~~a~~~l~~~~~~~~ 312 (513)
....+|.+.+++.+.+..||..++++||+++.... +.....-.+..++.++.++.. .+-+.+.+.|+.++..-.
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGkn 233 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKN 233 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCC
Confidence 23479999999999999999999999999974211 111223456666777666544 556678889999998543
Q ss_pred hH---HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHH---HHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhh
Q 010290 313 PE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (513)
Q Consensus 313 ~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~ 386 (513)
+. ......+|.+.+++...++.+-.-++++++.++...... .....+.+.+..+|..++..|+.-+++.+|.|+
T Consensus 234 P~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIV 313 (526)
T COG5064 234 PPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIV 313 (526)
T ss_pred CCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCee
Confidence 32 334567899999999999999999999999988643221 112345677889999999999999999999997
Q ss_pred hhhhhhh---hhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChh---hHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010290 387 QVIGIDL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNV 460 (513)
Q Consensus 387 ~~~~~~~---~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~d~~~~VR~~a~~~l 460 (513)
..-+.+. +.-..++.+..+++++...+|..+|+.++.+...-... .....++|.++++++.-+.-+|+.|++++
T Consensus 314 TG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAi 393 (526)
T COG5064 314 TGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAI 393 (526)
T ss_pred ecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 7433221 12346678888899998899999999998886532111 12345899999999999999999999999
Q ss_pred HHHHHHhC--hhhH----hhhhHHHHHhhhcC-cchHHHHHHHHHHHh
Q 010290 461 KRLAEEFG--PDWA----MQHIVPQVALIKSS-RNLVLNSVLSLLKNA 501 (513)
Q Consensus 461 ~~l~~~~~--~~~~----~~~i~~~L~~~~~~-~~~~~r~~~~~~~~i 501 (513)
......-- ++.. -+-++..|-+++.- +|-+..+++.++++|
T Consensus 394 sNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eni 441 (526)
T COG5064 394 SNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENI 441 (526)
T ss_pred HhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHH
Confidence 87655321 1111 13344445454432 244555556655554
No 46
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=4.9e-09 Score=101.95 Aligned_cols=437 Identities=15% Similarity=0.130 Sum_probs=249.2
Q ss_pred ccCCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhc
Q 010290 56 NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAA 135 (513)
Q Consensus 56 ~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~ 135 (513)
+++++.-+...|-.++|.++. .+....+.|.++.++++.++.||+.|+-|..++..+.+. ..+.+++...++..
T Consensus 116 L~s~nq~vVglAL~alg~i~s----~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~--l~e~f~~~~~~lL~ 189 (866)
T KOG1062|consen 116 LNSSNQYVVGLALCALGNICS----PEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD--LVEHFVIAFRKLLC 189 (866)
T ss_pred ccCCCeeehHHHHHHhhccCC----HHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch--HHHHhhHHHHHHHh
Confidence 556666666666666666543 677889999999999999999999999999999887654 34556666777778
Q ss_pred CCCcchhhhHHhhhHhhcCCCCHH--HHHHHHHHHHH----HcCC-----------CchHHHHHHHHhHHHHHHHhhhhh
Q 010290 136 GEWFTARVSSCGLFHVAYPSAPEA--LKTELRTIYRQ----LCQD-----------DMPMVRRSAATNLGKFAATVEAAH 198 (513)
Q Consensus 136 d~~~~~R~~~~~~l~~~~~~~~~~--~~~~l~~~l~~----l~~d-----------~~~~vr~~a~~~l~~l~~~~~~~~ 198 (513)
+.+..+-.++..++..+++.-++. +..++.+.|.. +... ++|..+..+.+.|+-+++.-. .
T Consensus 190 ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~--d 267 (866)
T KOG1062|consen 190 EKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA--D 267 (866)
T ss_pred hcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc--c
Confidence 888888888888888888776554 33334444443 3221 356677777777776665421 1
Q ss_pred hHHHHHHHHHHhhh--ccchhHHHHH-HHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC
Q 010290 199 LKSEIMSIFEELTQ--DDQDSVRLLA-VEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE 275 (513)
Q Consensus 199 ~~~~l~~~l~~l~~--d~~~~vr~~a-~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~ 275 (513)
.....-.+|-+... |.+.++-.+. .+|+..+....+........+.++-+++.+++..+|..++..|....+.-+.
T Consensus 268 aSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~- 346 (866)
T KOG1062|consen 268 ASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPT- 346 (866)
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcH-
Confidence 22222223333332 2222222221 2233333333333334444566666666666666777777777776543111
Q ss_pred ccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHH
Q 010290 276 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT 355 (513)
Q Consensus 276 ~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 355 (513)
..+.--..+..+++|+|+.+|+.|++..-.+...-.-. .+..-+..++...+...|...+.-+..+++.+.++..
T Consensus 347 -avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~----~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~ 421 (866)
T KOG1062|consen 347 -AVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVR----VMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKR 421 (866)
T ss_pred -HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHH----HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcch
Confidence 12344567889999999999999999888877643333 3334444555556788888888888888887766432
Q ss_pred HHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhh-hhhh-h-hhhHHHHHHH--hhcCCChhHHHHHHHHHHHHHHHhCh
Q 010290 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDL-L-SQSLLPAIVE--LAEDRHWRVRLAIIEYIPLLASQLGV 430 (513)
Q Consensus 356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~-~~~~-~-~~~l~~~l~~--l~~~~~~~vR~~~~~~l~~l~~~~~~ 430 (513)
. .+..+.+.++....-|+..+...+-.++..- +... + ...+...+.. +..-+....-+.+.|++|.-...+-.
T Consensus 422 W--~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~ 499 (866)
T KOG1062|consen 422 W--HIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLD 499 (866)
T ss_pred h--HHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhc
Confidence 1 2333444444433445555555554444322 2110 0 0011111111 01112233456778888777643211
Q ss_pred --------hhHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhhcCc--chHHH-----H
Q 010290 431 --------GFFDDKLGALCMQWLK--DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKSSR--NLVLN-----S 493 (513)
Q Consensus 431 --------~~~~~~~~~~l~~~l~--d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~~~--~~~~r-----~ 493 (513)
..-.+.++..+.+++. ..+..++.-|+.++-+|...+... .+++-..+..+..+- +.++| .
T Consensus 500 ~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~--~~ri~~lI~~~~~s~~~elQQRa~E~~~ 577 (866)
T KOG1062|consen 500 GANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS--SERIKQLISSYKSSLDTELQQRAVEYNA 577 (866)
T ss_pred CccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 1112345555555443 223778888999998888887663 123333333322221 34444 3
Q ss_pred HHHHHHHhcccceeehh
Q 010290 494 VLSLLKNAGIDAVFYME 510 (513)
Q Consensus 494 ~~~~~~~i~~~~~~~~~ 510 (513)
+..--..+.+..|+.||
T Consensus 578 l~~~~~~lr~siLe~mp 594 (866)
T KOG1062|consen 578 LFAKDKHLRKSILERMP 594 (866)
T ss_pred HHHHHHHHHHHhcccCc
Confidence 33344566666666665
No 47
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.7e-08 Score=101.33 Aligned_cols=447 Identities=14% Similarity=0.095 Sum_probs=251.4
Q ss_pred hhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhhH-HHHHhhccchhHHHHHHHHHHHHHHhh-cChHHH
Q 010290 46 RKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLP-PLETLCTVEETCVRDKAVESLCRIGSQ-MREQDV 122 (513)
Q Consensus 46 ~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~-~l~~l~~~~~~~vR~~a~~~l~~l~~~-~~~~~~ 122 (513)
.+.++..+.+ +.|.+..||..+|+-+|.+...++. ...+.++. .+.-+.--+++...+.|+-++++++.. +-....
T Consensus 339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~-~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP-ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH-HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 3455555666 7888889999999999988876652 32333222 222122234566778888888888764 222333
Q ss_pred HhhHHHHHHHhhc--------CCCcchhhhHHhhhHhhcCCCCHH----HHHHHHHH-HHHHcCCCchHHHHHHHHhHHH
Q 010290 123 VEHFIPLVKRLAA--------GEWFTARVSSCGLFHVAYPSAPEA----LKTELRTI-YRQLCQDDMPMVRRSAATNLGK 189 (513)
Q Consensus 123 ~~~~~~~l~~l~~--------d~~~~~R~~~~~~l~~~~~~~~~~----~~~~l~~~-l~~l~~d~~~~vr~~a~~~l~~ 189 (513)
...+.|++..... .....+|-+||+++-+++..-.+. +.+.+... +...+-|++-++|++|..++-+
T Consensus 418 l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE 497 (1133)
T KOG1943|consen 418 LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE 497 (1133)
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence 4456677654332 233678888888887777766555 22333333 2345568888999998888776
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHH-HHhcCCCCHHHHHHHHHHHHHH
Q 010290 190 FAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVI-VNFSQDKSWRVRYMVANQLYEL 268 (513)
Q Consensus 190 l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l-~~~~~d~~~~vr~~~~~~l~~l 268 (513)
..-..|.-..--.++. ..+.-.-.-|..+...+......++ .+...++..+ .+-..+-+..+|..++.+|.++
T Consensus 498 ~VGR~~n~p~Gi~Lis----~~dy~sV~~rsNcy~~l~~~ia~~~--~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~L 571 (1133)
T KOG1943|consen 498 NVGRQGNFPHGISLIS----TIDYFSVTNRSNCYLDLCVSIAEFS--GYREPVFNHLLTKKVCHWDVKIRELAAYALHKL 571 (1133)
T ss_pred HhccCCCCCCchhhhh----hcchhhhhhhhhHHHHHhHHHHhhh--hHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 5543222100001111 1111111223333333333222222 1122223222 2235566778999999999998
Q ss_pred HHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhCh---------H-HH--HHhhhhhhhhhcCCC--cHH
Q 010290 269 CEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---------E-LA--IQHILPCVKELSSDS--SQH 334 (513)
Q Consensus 269 ~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---------~-~~--~~~l~~~l~~~~~d~--~~~ 334 (513)
...-.+.. ....+|.++......+...|..+..+.+.+...+.. + .+ ...++|.+....-.+ ..-
T Consensus 572 s~~~pk~~-a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~l 650 (1133)
T KOG1943|consen 572 SLTEPKYL-ADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTL 650 (1133)
T ss_pred HHhhHHhh-cccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHH
Confidence 76654443 345666666666777888888888887776654311 0 01 111223222111112 245
Q ss_pred HHHHHHHHHHHhchhhC---HHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhh--hhhhhhhHH-HHHHHhhcC
Q 010290 335 VRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLL-PAIVELAED 408 (513)
Q Consensus 335 vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~--~~~~~~~l~-~~l~~l~~~ 408 (513)
.|.+.+..+..+...-. .+++.+.....+.+.+.+++ .+|.++.++++.++..+- .+.....++ ..+..+-+.
T Consensus 651 mr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~ 729 (1133)
T KOG1943|consen 651 MRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKC 729 (1133)
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCc
Confidence 67777777766653221 23444556666667776665 899999999999976541 221212233 333444444
Q ss_pred CChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHHhChh-------hHhhhhHHHH
Q 010290 409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPD-------WAMQHIVPQV 480 (513)
Q Consensus 409 ~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l-~d~~~~VR~~a~~~l~~l~~~~~~~-------~~~~~i~~~L 480 (513)
.+..+|.....+++.+-..+-.....+++...++... .|..++-|...+.++.+++..++.. .+.+.++..+
T Consensus 730 ~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~l 809 (1133)
T KOG1943|consen 730 SEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNAL 809 (1133)
T ss_pred hHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 4777888777777666433322333444544444433 3447788999999999999988822 2234444554
Q ss_pred HhhhcCc-----chHHHHHHHHHHHh
Q 010290 481 ALIKSSR-----NLVLNSVLSLLKNA 501 (513)
Q Consensus 481 ~~~~~~~-----~~~~r~~~~~~~~i 501 (513)
.+...|. +|+++.+++++..+
T Consensus 810 ddYttd~rGDVGswVReaAm~al~~~ 835 (1133)
T KOG1943|consen 810 DDYTTDSRGDVGSWVREAAMKALSSL 835 (1133)
T ss_pred hhcccccCccHHHHHHHHHHHHHHhh
Confidence 4444443 56777666555443
No 48
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.7e-08 Score=97.89 Aligned_cols=414 Identities=15% Similarity=0.082 Sum_probs=267.8
Q ss_pred hhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHH
Q 010290 50 IPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIP 128 (513)
Q Consensus 50 ~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~ 128 (513)
+..+++ +.|+++.+|..|.+.+..+-- .-..+.++-.+.+...|..+.||..|+.++.++-+.-+. + ...+..
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsIRv----p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e-~-k~qL~e 183 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSIRV----PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE-Q-KDQLEE 183 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhcch----hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh-h-HHHHHH
Confidence 345555 889999999999988865422 123344555567888999999999999999998775333 2 237788
Q ss_pred HHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh------------
Q 010290 129 LVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA------------ 196 (513)
Q Consensus 129 ~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~------------ 196 (513)
.+..+..|.++.+--+|+..+..++..--+ ....-...++.++-|-+.--+.-+...|...+++--+
T Consensus 184 ~I~~LLaD~splVvgsAv~AF~evCPerld-LIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n 262 (968)
T KOG1060|consen 184 VIKKLLADRSPLVVGSAVMAFEEVCPERLD-LIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDN 262 (968)
T ss_pred HHHHHhcCCCCcchhHHHHHHHHhchhHHH-HhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccC
Confidence 899999999998888888877766643211 1122234455555565544455566666666654211
Q ss_pred -------------------hhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHH
Q 010290 197 -------------------AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRV 257 (513)
Q Consensus 197 -------------------~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~v 257 (513)
+.-...++.....++...++.|-.++++..-.++... -...+...+..++.. +..+
T Consensus 263 ~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~----~~~~i~kaLvrLLrs-~~~v 337 (968)
T KOG1060|consen 263 GRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN----QVTKIAKALVRLLRS-NREV 337 (968)
T ss_pred cccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH----HHHHHHHHHHHHHhc-CCcc
Confidence 0112345555555777788888888888777766442 234456666666644 3447
Q ss_pred HHHHHHHHHHHHHHhCCCccccchHHHHHHhc-CCCcH-HHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHH
Q 010290 258 RYMVANQLYELCEAVGPEPTRSDVVPAYVRLL-RDNEA-EVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHV 335 (513)
Q Consensus 258 r~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l-~d~~~-~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~v 335 (513)
+..+++.+..++..-. .-+.|.+..+. ...++ .++.-=++-|..+...- -...+++-+...+.+.+..+
T Consensus 338 qyvvL~nIa~~s~~~~-----~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~es----ni~~ILrE~q~YI~s~d~~f 408 (968)
T KOG1060|consen 338 QYVVLQNIATISIKRP-----TLFEPHLKSFFVRSSDPTQVKILKLEILSNLANES----NISEILRELQTYIKSSDRSF 408 (968)
T ss_pred hhhhHHHHHHHHhcch-----hhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhc----cHHHHHHHHHHHHhcCchhH
Confidence 8888888888875411 12345554432 22222 34444445555555432 23566677777778877789
Q ss_pred HHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCC-ChhHH
Q 010290 336 RSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVR 414 (513)
Q Consensus 336 r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~-~~~vR 414 (513)
-.+++++++.++...+. +.++.+.-+..+++.++..|-..++..+..+.+.-..+. ..++..+..++... -..-|
T Consensus 409 aa~aV~AiGrCA~~~~s--v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h--~~ii~~La~lldti~vp~AR 484 (968)
T KOG1060|consen 409 AAAAVKAIGRCASRIGS--VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH--LEILFQLARLLDTILVPAAR 484 (968)
T ss_pred HHHHHHHHHHHHHhhCc--hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH--HHHHHHHHHHhhhhhhhhhh
Confidence 99999999999876664 356788889999999999999999999999887644432 13555555555332 35677
Q ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhh-cCcchHHH
Q 010290 415 LAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIK-SSRNLVLN 492 (513)
Q Consensus 415 ~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~-~~~~~~~r 492 (513)
...+|.++..+..... ..+.++..+.+-+.|...+||...++...++...-..+ .+.+......+- -|++|=.|
T Consensus 485 A~IiWLige~~e~vpr--i~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~--~kll~~Yv~~L~~yD~sYDiR 559 (968)
T KOG1060|consen 485 AGIIWLIGEYCEIVPR--IAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ--TKLLVQYVFELARYDLSYDIR 559 (968)
T ss_pred ceeeeeehhhhhhcch--hchHHHHHHHHhhccccchhhHHHHHhhhhheEechhh--HHHHHHHHHHHhccCCCcchh
Confidence 8888888877765322 12345666666788999999999999988876543332 244444444433 35566444
No 49
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.36 E-value=1e-08 Score=95.98 Aligned_cols=256 Identities=13% Similarity=0.132 Sum_probs=161.1
Q ss_pred hhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc
Q 010290 198 HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT 277 (513)
Q Consensus 198 ~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 277 (513)
.+...+.|++-.+++|.-+.|...+++++.+++...-..++.+..+..+..++..+....|-++++.|.+++...+....
T Consensus 260 q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~ 339 (898)
T COG5240 260 QALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS 339 (898)
T ss_pred HHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee
Confidence 34557888888899998889999999999988876533445677888899999998888999999999999987554432
Q ss_pred ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHH----
Q 010290 278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---- 353 (513)
Q Consensus 278 ~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---- 353 (513)
.--+-+..++.|.+..+-.-| +..+.+. |.++-.+.++..+..+..|-+...+.-++.++..++-.++.+
T Consensus 340 --vcN~evEsLIsd~Nr~IstyA---ITtLLKT-Gt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~ 413 (898)
T COG5240 340 --VCNKEVESLISDENRTISTYA---ITTLLKT-GTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSY 413 (898)
T ss_pred --ecChhHHHHhhcccccchHHH---HHHHHHc-CchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHH
Confidence 222455667778875554444 4555554 445445667777777766665555555555555555444432
Q ss_pred --------------HHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcC-----------
Q 010290 354 --------------ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED----------- 408 (513)
Q Consensus 354 --------------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~----------- 408 (513)
.+...++..+.+.++. +|+-|+.|+..|..+++.... +.+.-.+..++..
T Consensus 414 l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~-~p~skEraLe~LC~fIEDcey----~~I~vrIL~iLG~EgP~a~~P~~y 488 (898)
T COG5240 414 LDFLGSSLLQEGGLEFKKYMVDAISDAMEN-DPDSKERALEVLCTFIEDCEY----HQITVRILGILGREGPRAKTPGKY 488 (898)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHhhcch----hHHHHHHHHHhcccCCCCCCcchH
Confidence 1222333333333221 234445454444444443221 2222222222221
Q ss_pred ----------CChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 010290 409 ----------RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA 464 (513)
Q Consensus 409 ----------~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~ 464 (513)
+|..+|.+|+.+++.++-..+..+..+.+...+.++++|.+.+||..|.-.+..+-
T Consensus 489 vrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 489 VRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 24567777888877777776666666677777777888888888887777666553
No 50
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.36 E-value=8.3e-10 Score=104.41 Aligned_cols=250 Identities=24% Similarity=0.315 Sum_probs=180.8
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhH
Q 010290 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHI 242 (513)
Q Consensus 163 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 242 (513)
...+.+.+.+.|+++.+|..+...++.+.. ...+|.+.+.+.|.++.+|..++.+++.+.. +..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a 106 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEA 106 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhH
Confidence 346667777888888999888888766553 3567778888888888999999988776652 345
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCc------------HHHHHHHHHhHHHHHh
Q 010290 243 LPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE------------AEVRIAAAGKVTKICR 309 (513)
Q Consensus 243 ~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~------------~~vr~~a~~~l~~~~~ 309 (513)
+|.+...++ |+++.||..++.+|+.+.. ..-++.+...++|.. ..+|.+++..++.+..
T Consensus 107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~--------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~ 178 (335)
T COG1413 107 VPPLVELLENDENEGVRAAAARALGKLGD--------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD 178 (335)
T ss_pred HHHHHHHHHcCCcHhHHHHHHHHHHhcCc--------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence 556666555 7889999999988888753 233555555555544 3578888888887654
Q ss_pred hhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhh
Q 010290 310 ILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (513)
Q Consensus 310 ~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~ 389 (513)
+...+.+...+.+....+|..++..++.+.... ..+.+.+.+.+.|++..||..++..++.+..
T Consensus 179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~-- 242 (335)
T COG1413 179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD-- 242 (335)
T ss_pred --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence 344466667778888899999999988887432 3466788889999999999999999887754
Q ss_pred hhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 010290 390 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (513)
Q Consensus 390 ~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~ 466 (513)
....+.+...+.+.++.++.......+.. + ...-.+.+...+.|....+|..+...++.+...
T Consensus 243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~----~----~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (335)
T COG1413 243 ------EEAVDALAKALEDEDVILALLAAAALGAL----D----LAEAALPLLLLLIDEANAVRLEAALALGQIGQE 305 (335)
T ss_pred ------chhHHHHHHHHhccchHHHHHHHHHhccc----C----chhhHHHHHHHhhcchhhHHHHHHHHHHhhccc
Confidence 45566677777888887777666555411 1 112356667788899999999999998887553
No 51
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.33 E-value=1.7e-10 Score=100.88 Aligned_cols=375 Identities=13% Similarity=0.096 Sum_probs=239.6
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHhhcCh----HHHHhhHHHHHHHhh-cCCCcchhhhHHhhhHhhcCCCCHH----
Q 010290 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRE----QDVVEHFIPLVKRLA-AGEWFTARVSSCGLFHVAYPSAPEA---- 159 (513)
Q Consensus 89 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~l~-~d~~~~~R~~~~~~l~~~~~~~~~~---- 159 (513)
|-+.+-+..++-.....|..-+..+.+.-.. ..+..-+.|.+.++. +.+.......|+..+..++..-+..
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 4333323333444445555555555443221 234444677777666 4444555667888888887765554
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh--h-hhHHHHHHHHHHhhhccch--hHHHHHHHHHHHhhccCC
Q 010290 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--A-HLKSEIMSIFEELTQDDQD--SVRLLAVEGCGALGKLLE 234 (513)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~l~~d~~~--~vr~~a~~~l~~l~~~~~ 234 (513)
.-...+|.|.+++.+++..||.++..+||.++-.-.. + ......+..+..++..+.. .+-..+..+|.+++..-.
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGkn 233 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKN 233 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCC
Confidence 3356789999999999999999999999998743211 1 1112233333444443333 555667788889887643
Q ss_pred h---hhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcCCCcHHHHHHHHHhHHHHH
Q 010290 235 P---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKIC 308 (513)
Q Consensus 235 ~---~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~ 308 (513)
+ .......+|.+.+++...++.|-.-++++++.+...-.+. ....-+.+-++.++.+++..|..-|+++.|.+.
T Consensus 234 P~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIV 313 (526)
T COG5064 234 PPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIV 313 (526)
T ss_pred CCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCee
Confidence 3 2345668999999999999999999999999987532211 112345667888999999999988999998887
Q ss_pred hhhChH---HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCH---HHHHHhHHHHHHHhcCCCChHHHHHHHHHH
Q 010290 309 RILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKL 382 (513)
Q Consensus 309 ~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 382 (513)
..-+.+ .+.-..++.+..+++++..++|..+|+.++.+...-.. ......+.|.+.+++...+..+|..||+++
T Consensus 314 TG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAi 393 (526)
T COG5064 314 TGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAI 393 (526)
T ss_pred ecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 643222 11123457777778899899999999999988642221 122357889999999999999999999998
Q ss_pred HHhhhhh-hh-h----hhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChh---------hH---HH--HHHHHHH
Q 010290 383 DQVNQVI-GI-D----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---------FF---DD--KLGALCM 442 (513)
Q Consensus 383 ~~i~~~~-~~-~----~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~---------~~---~~--~~~~~l~ 442 (513)
....... +. + .+.+..+..+..++.-.+..+-+.++.++..+.+....+ .+ .+ ..+..+.
T Consensus 394 sNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~ 473 (526)
T COG5064 394 SNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIH 473 (526)
T ss_pred HhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHH
Confidence 8765431 11 1 122344555666666556666677788887776542111 01 11 2345555
Q ss_pred HHhcCchhHHHHHHHHHHHHH
Q 010290 443 QWLKDKVYSIRDAAANNVKRL 463 (513)
Q Consensus 443 ~~l~d~~~~VR~~a~~~l~~l 463 (513)
.+-...+..|-..|...+..+
T Consensus 474 ~~Q~s~n~~iy~KAYsIIe~f 494 (526)
T COG5064 474 GLQDSVNRTIYDKAYSIIEKF 494 (526)
T ss_pred HhhhccccHHHHHHHHHHHHH
Confidence 555666666666666654443
No 52
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=2.2e-08 Score=97.54 Aligned_cols=423 Identities=10% Similarity=0.122 Sum_probs=246.6
Q ss_pred HHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhhHHH
Q 010290 13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPL 91 (513)
Q Consensus 13 ~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l 91 (513)
.+.+.|+|.+.-+-..|+.+++.++ +.+....+.|.+.+ ++..++-+|+.|+.+...+.+... ...+.+++-.
T Consensus 111 slknDL~s~nq~vVglAL~alg~i~----s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P--~l~e~f~~~~ 184 (866)
T KOG1062|consen 111 SLKNDLNSSNQYVVGLALCALGNIC----SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP--DLVEHFVIAF 184 (866)
T ss_pred HHHhhccCCCeeehHHHHHHhhccC----CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc--hHHHHhhHHH
Confidence 3556688888888888877776663 44556788898888 888999999999999999888654 4556677788
Q ss_pred HHhhccchhHHHHHHHHHHHHHHhhcCh-----HHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHH
Q 010290 92 ETLCTVEETCVRDKAVESLCRIGSQMRE-----QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRT 166 (513)
Q Consensus 92 ~~l~~~~~~~vR~~a~~~l~~l~~~~~~-----~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~ 166 (513)
.+++.+.+..|-..++..+..+++.-+. .+..+.++..+.++.....+..- =+..+++...+--+-
T Consensus 185 ~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspey---------dv~gi~dPFLQi~iL 255 (866)
T KOG1062|consen 185 RKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEY---------DVHGISDPFLQIRIL 255 (866)
T ss_pred HHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---------CccCCCchHHHHHHH
Confidence 8899999999988888888888876332 12233344455555432211000 001111111111112
Q ss_pred HHHHHcCCCchHHHHHHHHhHHHHHHHh----------------------hhhhhHHHHHHHHHHhhhccchhHHHHHHH
Q 010290 167 IYRQLCQDDMPMVRRSAATNLGKFAATV----------------------EAAHLKSEIMSIFEELTQDDQDSVRLLAVE 224 (513)
Q Consensus 167 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~----------------------~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~ 224 (513)
.++..+...++.-.......|++++... +.......-+.++-+++...+.++|..|+.
T Consensus 256 rlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn 335 (866)
T KOG1062|consen 256 RLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALN 335 (866)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehh
Confidence 2222333334444444444455444322 111222223344444444444455555555
Q ss_pred HHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhH
Q 010290 225 GCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304 (513)
Q Consensus 225 ~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l 304 (513)
.|..+...-+. -...=-..+.+.++|++..+|+.+++..-.+.+. .....+..-++..|...+++.|...+..+
T Consensus 336 ~L~r~V~~d~~--avqrHr~tIleCL~DpD~SIkrralELs~~lvn~----~Nv~~mv~eLl~fL~~~d~~~k~~~as~I 409 (866)
T KOG1062|consen 336 MLLRVVQQDPT--AVQRHRSTILECLKDPDVSIKRRALELSYALVNE----SNVRVMVKELLEFLESSDEDFKADIASKI 409 (866)
T ss_pred hHHhhhcCCcH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 55544433211 1111234467788999999999998887777643 11234666666677777889999999999
Q ss_pred HHHHhhhChH--HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhc-hhhCHHHHHHhHHHHHHHhcC-----CCChHHHH
Q 010290 305 TKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMA-PILGKDATIEQLLPIFLSLLK-----DEFPDVRL 376 (513)
Q Consensus 305 ~~~~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~-~~~~~~~~~~~l~~~l~~~l~-----d~~~~vr~ 376 (513)
..+.+.+.++ |+.+.++..+ ......|+..++..+-.++ ..++... ..........+.. -+.+....
T Consensus 410 ~~laEkfaP~k~W~idtml~Vl----~~aG~~V~~dv~~nll~LIa~~~~e~~-~y~~~rLy~a~~~~~~~~is~e~l~q 484 (866)
T KOG1062|consen 410 AELAEKFAPDKRWHIDTMLKVL----KTAGDFVNDDVVNNLLRLIANAFQELH-EYAVLRLYLALSEDTLLDISQEPLLQ 484 (866)
T ss_pred HHHHHhcCCcchhHHHHHHHHH----HhcccccchhhHHHHHHHHhcCCcchh-hHHHHHHHHHHhhhhhhhhhhhhHHH
Confidence 9999988776 4444444333 3333333333333333332 2222211 1111222222211 13345577
Q ss_pred HHHHHHHHhhhhhhh--------hhhhhhHHHHHHHhhc--CCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhc
Q 010290 377 NIISKLDQVNQVIGI--------DLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK 446 (513)
Q Consensus 377 ~a~~~l~~i~~~~~~--------~~~~~~l~~~l~~l~~--~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~ 446 (513)
.+.+++|+....+-. ..-...++..+.+++. ..+..+|..++-++..+...+... .+.+-..+.....
T Consensus 485 Va~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~--~~ri~~lI~~~~~ 562 (866)
T KOG1062|consen 485 VASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS--SERIKQLISSYKS 562 (866)
T ss_pred HHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHhcc
Confidence 888999988743311 1122456666666554 235889999999998888776554 4456677777888
Q ss_pred CchhHHHHHHHHHHHHH
Q 010290 447 DKVYSIRDAAANNVKRL 463 (513)
Q Consensus 447 d~~~~VR~~a~~~l~~l 463 (513)
.-+.++++.|.+.=.-+
T Consensus 563 s~~~elQQRa~E~~~l~ 579 (866)
T KOG1062|consen 563 SLDTELQQRAVEYNALF 579 (866)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 88889999988764433
No 53
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=3.1e-09 Score=100.98 Aligned_cols=250 Identities=19% Similarity=0.228 Sum_probs=161.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhC-h-------
Q 010290 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN-P------- 313 (513)
Q Consensus 242 l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~-~------- 313 (513)
+...+..+..|.+..||..+++++-.+.+.+. . ....-....+++.|.+..||.+|++.+..+++... +
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k--L-~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFK--L-SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhccccc--c-cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 45556666777777777777777766665221 1 22344555667777777777777777776666541 1
Q ss_pred HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHH----H--------------------------------
Q 010290 314 ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI----E-------------------------------- 357 (513)
Q Consensus 314 ~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~----~-------------------------------- 357 (513)
.......+..+...+.|.+|.||..++..+|.+-+.. .++.. .
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS-ee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ 354 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS-EEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWN 354 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH-HHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccc
Confidence 1233444555556667777777777777776653221 11111 0
Q ss_pred -------------hHH-----HHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHH
Q 010290 358 -------------QLL-----PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 419 (513)
Q Consensus 358 -------------~l~-----~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~ 419 (513)
.++ -.+...+.|+..+||.+|..+++.++..- ..+....+..+..+++|+...||..++.
T Consensus 355 advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss--P~FA~~aldfLvDMfNDE~~~VRL~ai~ 432 (823)
T KOG2259|consen 355 ADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS--PGFAVRALDFLVDMFNDEIEVVRLKAIF 432 (823)
T ss_pred ccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 111 23455677888899999999999987642 2355678889999999999999999999
Q ss_pred HHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH--HHhChhhHhhhhHHHHHhhhcCcchHHHHHHHH
Q 010290 420 YIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA--EEFGPDWAMQHIVPQVALIKSSRNLVLNSVLSL 497 (513)
Q Consensus 420 ~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~--~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~~~ 497 (513)
++..++..+ ...+..++.++..+.|.+++||++.-+.|+..- ..-+-+...+.++..|...-+|++ .++.+
T Consensus 433 aL~~Is~~l---~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~kyPqDrd----~i~~c 505 (823)
T KOG2259|consen 433 ALTMISVHL---AIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGKYPQDRD----EILRC 505 (823)
T ss_pred HHHHHHHHh---eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhCCCCcH----HHHHH
Confidence 999998773 234567899999999999999999888776421 111112223555555555555544 34446
Q ss_pred HHHhccc
Q 010290 498 LKNAGID 504 (513)
Q Consensus 498 ~~~i~~~ 504 (513)
+..||++
T Consensus 506 m~~iGqn 512 (823)
T KOG2259|consen 506 MGRIGQN 512 (823)
T ss_pred HHHHhcc
Confidence 6666654
No 54
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.31 E-value=4.5e-09 Score=98.26 Aligned_cols=255 Identities=14% Similarity=0.075 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHh-hhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhh
Q 010290 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATV-EAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 238 (513)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~-~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~ 238 (513)
...++.|++..-+.|+-..|.-.+++.+..++... ++ .+....+..+..++....-..|.+|++.+..++...|...
T Consensus 261 ~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~-~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv- 338 (898)
T COG5240 261 ALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGS-QFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV- 338 (898)
T ss_pred HHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee-
Confidence 55677888888888888899999999988887654 44 4556667778888888888899999999999998876531
Q ss_pred hhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCc-------------------------
Q 010290 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE------------------------- 293 (513)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~------------------------- 293 (513)
..--+-+..+.+|.+..+...++ ..+.+. |.+...+.++..+..++.|-.
T Consensus 339 -~vcN~evEsLIsd~Nr~IstyAI---TtLLKT-Gt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~ 413 (898)
T COG5240 339 -SVCNKEVESLISDENRTISTYAI---TTLLKT-GTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSY 413 (898)
T ss_pred -eecChhHHHHhhcccccchHHHH---HHHHHc-CchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHH
Confidence 11223344445554433332222 222221 222222333333333333322
Q ss_pred -------------HHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHH
Q 010290 294 -------------AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360 (513)
Q Consensus 294 -------------~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 360 (513)
-+-+..++.++..+.+..+. ..+..+..+..+++|..+. .-+++.++-+.+.-+.......++
T Consensus 414 l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~--skEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yv 489 (898)
T COG5240 414 LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPD--SKERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYV 489 (898)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHhhCch--HHHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHH
Confidence 23333333333333332211 1122333333333332221 112222222222222222223344
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 010290 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (513)
Q Consensus 361 ~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~ 425 (513)
..+.+.+-=++..||.+|..+|..++-........+.+...+...++|.+..+|..|..++..+-
T Consensus 490 rhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 490 RHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 44444444456789999999999998887777777889999999999999999999988876553
No 55
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=1.7e-09 Score=105.12 Aligned_cols=437 Identities=14% Similarity=0.104 Sum_probs=267.3
Q ss_pred CCCCcHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhh
Q 010290 6 EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYA 84 (513)
Q Consensus 6 ~~~~~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~ 84 (513)
..+..+..++....+++|..|..|++....+ +-....+++..-+.+ ..|+++.+|+.++.+..++...-..-...
T Consensus 83 ~a~~avnt~~kD~~d~np~iR~lAlrtm~~l----~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~ 158 (734)
T KOG1061|consen 83 LAILAVNTFLKDCEDPNPLIRALALRTMGCL----RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVED 158 (734)
T ss_pred HHHhhhhhhhccCCCCCHHHHHHHhhceeeE----eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccc
Confidence 3344566777778889999999998776544 233445555555555 88999999999999988877754444455
Q ss_pred hhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH--HHH
Q 010290 85 NVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA--LKT 162 (513)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~--~~~ 162 (513)
..+++.|..++.|+++.|-..|+.++..+.+.-+.........+.+..+...-+...-.+-+.++..+....+++ ...
T Consensus 159 ~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~ 238 (734)
T KOG1061|consen 159 SGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE 238 (734)
T ss_pred cchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH
Confidence 678888888889999999999999999988765421111111112221111111111123344455555555444 456
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh--hhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhh
Q 010290 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 240 (513)
Q Consensus 163 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 240 (513)
++++.+...+++.++.|--.+.+.+-...+.... +.+...+-|.+..++..+. ++...++..+.-+....+. .+..
T Consensus 239 ~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~-~~~~ 316 (734)
T KOG1061|consen 239 DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE-ILKV 316 (734)
T ss_pred HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH-HHHh
Confidence 7888888888888888877777777777665543 2333344455554555444 8888888888777766554 1111
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhh
Q 010290 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHI 320 (513)
Q Consensus 241 ~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l 320 (513)
++.-++ --.+|+. .|+..=.+++..++.. ...++++.-+.....+-+.+.-..+++++|.+.-..... +..
T Consensus 317 ~~~~Ff-~kynDPi-YvK~eKleil~~la~~----~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~c 387 (734)
T KOG1061|consen 317 EIKVFF-CKYNDPI-YVKLEKLEILIELAND----ANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDC 387 (734)
T ss_pred HhHeee-eecCCch-hhHHHHHHHHHHHhhH----hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhh
Confidence 111111 1123332 3555555555555432 113456777777777888888888899999887655433 567
Q ss_pred hhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCC-CChHHHHHHHHHHHHhhhhhhhhhhhhhHH
Q 010290 321 LPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399 (513)
Q Consensus 321 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~ 399 (513)
+..+..+++-....+-..++..+..+....+... +.+.+.+...+.. .+++.|.+-++.+|...+.+... ..++
T Consensus 388 v~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~--~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a---~elL 462 (734)
T KOG1061|consen 388 VSILLELLETKVDYVVQEAIVVIRDILRKYPNKY--ESVVAILCENLDSLQEPEAKAALIWILGEYAERIENA---LELL 462 (734)
T ss_pred HHHHHHHHhhcccceeeehhHHHHhhhhcCCCch--hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcH---HHHH
Confidence 7777777775555555556666666665555432 3344444444433 35788888888999888776543 4567
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHH-hcC-chhHHHHHHHHHHHHHH
Q 010290 400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LKD-KVYSIRDAAANNVKRLA 464 (513)
Q Consensus 400 ~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~-l~d-~~~~VR~~a~~~l~~l~ 464 (513)
..+.+...|+...|+...+-+.-.+.-..+.+ .+.++.-++.+ ..| .++.+|..+.--..-+.
T Consensus 463 ~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~--tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 463 ESFLENFKDETAEVQLELLTAAIKLFLKKPTE--TQELLQGVLPLATADTDNPDLRDRGLIYWRLLS 527 (734)
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHHhcCCcc--HHHHHHHHHhhhhccccChhhhhhHHHHHHHhh
Confidence 77777777777767665555444433222221 23344444443 333 35688888887776665
No 56
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.29 E-value=2.2e-09 Score=101.51 Aligned_cols=276 Identities=25% Similarity=0.241 Sum_probs=200.0
Q ss_pred HHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHH
Q 010290 126 FIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMS 205 (513)
Q Consensus 126 ~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 205 (513)
..+.+.....++++.+|..++..++.+ -....++.+..++.|.++.||..++.+|+.+.. + ..+|
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~-------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----~----~a~~ 108 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGEL-------GSEEAVPLLRELLSDEDPRVRDAAADALGELGD----P----EAVP 108 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhh-------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----h----hHHH
Confidence 345566667777888888888764322 234578888999999999999999997777653 2 3344
Q ss_pred HHHHhhh-ccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCC------------CCHHHHHHHHHHHHHHHHHh
Q 010290 206 IFEELTQ-DDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQD------------KSWRVRYMVANQLYELCEAV 272 (513)
Q Consensus 206 ~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d------------~~~~vr~~~~~~l~~l~~~~ 272 (513)
.+.+.+. |++..||..+..+++.+... ..+..+...++| ..+.+|..++..++.+.
T Consensus 109 ~li~~l~~d~~~~vR~~aa~aL~~~~~~--------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~--- 177 (335)
T COG1413 109 PLVELLENDENEGVRAAAARALGKLGDE--------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG--- 177 (335)
T ss_pred HHHHHHHcCCcHhHHHHHHHHHHhcCch--------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC---
Confidence 4444555 79999999999999987743 123333344433 33568988888888875
Q ss_pred CCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCH
Q 010290 273 GPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 352 (513)
Q Consensus 273 ~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~ 352 (513)
.+...+.+...+.|++..||.+|+.+++.+.... ..+.+.+....++.++.+|..++..++.+..
T Consensus 178 -----~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~---- 242 (335)
T COG1413 178 -----DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD---- 242 (335)
T ss_pred -----ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc----
Confidence 4567888899999999999999999999987632 2455777788899999999999999888752
Q ss_pred HHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhh
Q 010290 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 432 (513)
Q Consensus 353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~ 432 (513)
....+.+...+.+.++.++..+...++..- .....+.+...+.+.++.+|..+...+..+...
T Consensus 243 ----~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~----- 305 (335)
T COG1413 243 ----EEAVDALAKALEDEDVILALLAAAALGALD--------LAEAALPLLLLLIDEANAVRLEAALALGQIGQE----- 305 (335)
T ss_pred ----chhHHHHHHHHhccchHHHHHHHHHhcccC--------chhhHHHHHHHhhcchhhHHHHHHHHHHhhccc-----
Confidence 334677888899998988888777776221 123344455566888899999998888777543
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 010290 433 FDDKLGALCMQWLKDKVYSIRDAAANNVKR 462 (513)
Q Consensus 433 ~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~ 462 (513)
...........+....+|..+......
T Consensus 306 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~ 332 (335)
T COG1413 306 ---KAVAALLLALEDGDADVRKAALILLEG 332 (335)
T ss_pred ---chHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 233555667778888888887776654
No 57
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.27 E-value=1.7e-09 Score=102.25 Aligned_cols=240 Identities=13% Similarity=0.005 Sum_probs=168.7
Q ss_pred HHHHHHHhh-hccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccch
Q 010290 203 IMSIFEELT-QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDV 281 (513)
Q Consensus 203 l~~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 281 (513)
.++.+...+ .|++.+++..+..++.... ....+..+...+.|.++.||.+++++|+.+. .+..
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~--------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--------~~~a 118 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQE--------DALDLRSVLAVLQAGPEGLCAGIQAALGWLG--------GRQA 118 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccC--------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------chHH
Confidence 344455556 4677788877666664322 1224777888888999999999999998764 4567
Q ss_pred HHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHH
Q 010290 282 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLP 361 (513)
Q Consensus 282 l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 361 (513)
.+.+..++++.++.||.+++.+++.... .-.+.+..+++|.++.||..++.+++.+.. ....|
T Consensus 119 ~~~L~~~L~~~~p~vR~aal~al~~r~~---------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~ 181 (410)
T TIGR02270 119 EPWLEPLLAASEPPGRAIGLAALGAHRH---------DPGPALEAALTHEDALVRAAALRALGELPR--------RLSES 181 (410)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcc---------ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchH
Confidence 7888889999999999998877776321 112445566679999999999999988863 23456
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHH
Q 010290 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 441 (513)
Q Consensus 362 ~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l 441 (513)
.+...+.|.++.||.+|+.++..+.. ....+.+..+..++.+..+..+..++... +. +..++.+
T Consensus 182 ~L~~al~d~~~~VR~aA~~al~~lG~--------~~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L 245 (410)
T TIGR02270 182 TLRLYLRDSDPEVRFAALEAGLLAGS--------RLAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWL 245 (410)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHH
Confidence 67788999999999999999977644 22334455544555555555444444333 22 2577888
Q ss_pred HHHhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhhcCcchHHHHHHHHHHHhc
Q 010290 442 MQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKSSRNLVLNSVLSLLKNAG 502 (513)
Q Consensus 442 ~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~~~~~~i~ 502 (513)
..++.|+. ||..++.++|.+ |. ...++.|...+.|+ ++.|.+..++..|-
T Consensus 246 ~~ll~d~~--vr~~a~~AlG~l----g~----p~av~~L~~~l~d~-~~aR~A~eA~~~It 295 (410)
T TIGR02270 246 RELLQAAA--TRREALRAVGLV----GD----VEAAPWCLEAMREP-PWARLAGEAFSLIT 295 (410)
T ss_pred HHHhcChh--hHHHHHHHHHHc----CC----cchHHHHHHHhcCc-HHHHHHHHHHHHhh
Confidence 88888865 899999999976 33 45778888877774 47777777777663
No 58
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.27 E-value=2.1e-09 Score=101.63 Aligned_cols=118 Identities=19% Similarity=0.102 Sum_probs=53.4
Q ss_pred HHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHH
Q 010290 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244 (513)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 244 (513)
+..++..+.|.++.||..++++|+.+.. +...+.+..++.++++.||..++.+++... ..-.+
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------~~a~~~L~~~L~~~~p~vR~aal~al~~r~---------~~~~~ 150 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG--------RQAEPWLEPLLAASEPPGRAIGLAALGAHR---------HDPGP 150 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc--------hHHHHHHHHHhcCCChHHHHHHHHHHHhhc---------cChHH
Confidence 4555555555555555555555543321 122233333445555555555554444311 01123
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHH
Q 010290 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKI 307 (513)
Q Consensus 245 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~ 307 (513)
.+...++|+++.||..++.+++.+. ....+|.+...+.|.++.||.+|+.+++.+
T Consensus 151 ~L~~~L~d~d~~Vra~A~raLG~l~--------~~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 151 ALEAALTHEDALVRAAALRALGELP--------RRLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhc--------cccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 3444444555555555555555543 123344444445555555555555555443
No 59
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.23 E-value=9.4e-10 Score=97.77 Aligned_cols=188 Identities=20% Similarity=0.254 Sum_probs=129.9
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH----HHH---HhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCH
Q 010290 280 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAI---QHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 352 (513)
Q Consensus 280 ~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~---~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~ 352 (513)
.+.+.+...-.+.+|+.|..|+..+..++....+. .+. ..+++.+...+.|....+-..++.++..++..++.
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 34444444446667777777777777776654111 111 22334555666777888999999999999998887
Q ss_pred HH--HHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhH-HHHHHHhhcCCChhHHHHHHHHHHHHHHHhC
Q 010290 353 DA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL-LPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429 (513)
Q Consensus 353 ~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l-~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~ 429 (513)
.+ +.+.++|.+++.+.|+...+|..|..+|..+++..+. ...+ .+.+....+++++.+|..++.++..+....+
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~---~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY---SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 64 3478999999999999999999999999999998771 1334 7888889999999999999999999988877
Q ss_pred --hhh-----HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh
Q 010290 430 --VGF-----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 470 (513)
Q Consensus 430 --~~~-----~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 470 (513)
... ..+.+.+.+.++++|++++||..|-+++..+.+.+|..
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 121 23569999999999999999999999999999998875
No 60
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=99.19 E-value=4.3e-07 Score=90.50 Aligned_cols=433 Identities=14% Similarity=0.105 Sum_probs=240.6
Q ss_pred hcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhc
Q 010290 18 LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCT 96 (513)
Q Consensus 18 l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ 96 (513)
+.+.+...|..|++.+..... .|.. ...+.|-+.+ +...+.++++..--.+..+++.-+ +..-...+.+..=+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~-~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~lLavNti~kDl~ 102 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMS-LGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELALLAVNTIQKDLQ 102 (757)
T ss_pred ccccChHHHHHHHHHHHHHHh-cCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHhhcc
Confidence 666677789999887754432 2332 5566666666 668899999999999988888543 222334556666678
Q ss_pred cchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHH-HHHHHHHHcCCC
Q 010290 97 VEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTE-LRTIYRQLCQDD 175 (513)
Q Consensus 97 ~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~-l~~~l~~l~~d~ 175 (513)
|+|+.+|..|+++++.+ ....+...+++.+.++..|+++.+|..|+.++..+++.-.+.+... ....+..++.|.
T Consensus 103 d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~ 178 (757)
T COG5096 103 DPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADS 178 (757)
T ss_pred CCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCC
Confidence 99999999999988776 5566777889999999999999999999999999987765555554 778888899999
Q ss_pred chHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhh----hccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcC
Q 010290 176 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELT----QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ 251 (513)
Q Consensus 176 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~----~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~ 251 (513)
+|.|...|..++..+....- ..+...+.-.+.++. ....+.++..-++.+.......+.+ ...+...+.-...
T Consensus 179 dP~Vi~nAl~sl~~i~~e~a-~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s--~~~~~~~~~~~~~ 255 (757)
T COG5096 179 DPIVIANALASLAEIDPELA-HGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDS--AEDFEERLSPPLQ 255 (757)
T ss_pred CchHHHHHHHHHHHhchhhh-hhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCc--HHHHHHhccchhh
Confidence 99999999999888775411 111111111111111 1111333333333333322222221 1112222222233
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHH-HHHhh----h---------------
Q 010290 252 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVT-KICRI----L--------------- 311 (513)
Q Consensus 252 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~-~~~~~----~--------------- 311 (513)
..+..+-..++..+-.+...+..........|.+..++..+ +......+.... .+.+. +
T Consensus 256 ~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~-~~~~~~vl~~~~~~~l~~~~k~~~~~~~~f~~~~~~~i 334 (757)
T COG5096 256 HNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAKP-ESLIQYVLRRNIQIDLEVCSKLLDKVKKLFLIEYNDDI 334 (757)
T ss_pred hCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcCC-HHHHHHHHHHhhHHHHHhhHHHHHHHhhhhhhhccchH
Confidence 44555556666666666555554443334444444444433 122111111111 11110 0
Q ss_pred --------------ChHHHHHhhhhhhhhhcCC--CcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcC---CC-C
Q 010290 312 --------------NPELAIQHILPCVKELSSD--SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK---DE-F 371 (513)
Q Consensus 312 --------------~~~~~~~~l~~~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~---d~-~ 371 (513)
..+.. ..+++-+...+.+ .+...-..++++|+.++... ......++..++.++. -. .
T Consensus 335 ~~~lek~~~~t~l~~~~n~-~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~--~s~~~~~I~~~lel~~g~~~~~~ 411 (757)
T COG5096 335 YIKLEKLDQLTRLADDQNL-SQILLELIYYIAENHIDAEMVSEAIKALGDLASKA--ESSVNDCISELLELLEGVWIRGS 411 (757)
T ss_pred HHHHHHHHHHhhcCCchhh-HHHHHHHHHHHhhccccHHHHHHHHHHHHhhhhhh--hhhHHHHHHHHHHhccchhhccc
Confidence 00111 2234444444444 66777777788888777544 2233455666666665 11 1
Q ss_pred hHHHHH----HHHHHH---Hhhhhhhhh--hhhhhHHHHHHHhhc--CCChhHHHHH-----HHHHHHHHHHhChhhHHH
Q 010290 372 PDVRLN----IISKLD---QVNQVIGID--LLSQSLLPAIVELAE--DRHWRVRLAI-----IEYIPLLASQLGVGFFDD 435 (513)
Q Consensus 372 ~~vr~~----a~~~l~---~i~~~~~~~--~~~~~l~~~l~~l~~--~~~~~vR~~~-----~~~l~~l~~~~~~~~~~~ 435 (513)
..+... +++.+. .+...+..+ ......+-.+.+.+. +..++.|.++ ++.++.++..+..- .+
T Consensus 412 Yi~~e~~~~~~i~v~r~~~~~lr~l~~~~~~~~~~~l~~~~e~l~~~~~~P~~k~~~~~~~~~wl~ge~~~~i~r~--~~ 489 (757)
T COG5096 412 YIVQEVRIVDCISVIRISVLVLRILPNEYPKILLRGLYALEETLELQSREPRAKSVTDKYLGAWLLGEFSDIIPRL--EP 489 (757)
T ss_pred hhhhhhcccceeeeeehhcchhhhcCCcchhhhHHHHHHHHHHhhccccCcHHHHHHhhhhHHHhHHHHHHHHhhh--hH
Confidence 111111 011110 111111111 111222223333333 3346667777 78888887664432 13
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC
Q 010290 436 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 468 (513)
Q Consensus 436 ~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~ 468 (513)
.++........|....|+..-...-.++.-...
T Consensus 490 ~~l~~~~~~~~~E~levq~~Il~~svkl~~~~~ 522 (757)
T COG5096 490 ELLRIAISNFVDETLEVQYTILMSSVKLIANSI 522 (757)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHhCc
Confidence 455566666778888888888777766655433
No 61
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.15 E-value=1.7e-06 Score=90.30 Aligned_cols=455 Identities=16% Similarity=0.139 Sum_probs=253.8
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhhH
Q 010290 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLP 89 (513)
Q Consensus 11 i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~ 89 (513)
+..++-.+..+-...|..|+++|+.+...-+.-...+++-..+.. ..|....||.+|...+|.++-... +.......
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~--e~~~qyY~ 895 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP--ELIFQYYD 895 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH--HHHHHHHH
Confidence 445566677788899999999999996543222334455555555 789999999999999998776332 33333344
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCC-CCH----------
Q 010290 90 PLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPS-APE---------- 158 (513)
Q Consensus 90 ~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~-~~~---------- 158 (513)
.+..-+.|+.-.||.-+++.+..++...+.=.....+.-.+..-.+|+...+...++..|..+|=. .+.
T Consensus 896 ~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~k 975 (1692)
T KOG1020|consen 896 QIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARK 975 (1692)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHh
Confidence 444445788999999999999999988664211122222222223444444555555555444311 000
Q ss_pred ----------------HHHHHHHHHHHHH----------------------------------------cCCCchHHHHH
Q 010290 159 ----------------ALKTELRTIYRQL----------------------------------------CQDDMPMVRRS 182 (513)
Q Consensus 159 ----------------~~~~~l~~~l~~l----------------------------------------~~d~~~~vr~~ 182 (513)
....+++..+++- ..+++.++|..
T Consensus 976 I~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~ 1055 (1692)
T KOG1020|consen 976 ISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLL 1055 (1692)
T ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHH
Confidence 0011111111110 00111122221
Q ss_pred H-HHhHHHHHHHhhh---hhhHHHHHHHHHHhhh-ccchhHHHHHHHHHHHhhccCC--hhhhhhhHHHHHHHhcCCCCH
Q 010290 183 A-ATNLGKFAATVEA---AHLKSEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLE--PQDCVAHILPVIVNFSQDKSW 255 (513)
Q Consensus 183 a-~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~~~d~~~ 255 (513)
+ ...|..+++..+. ..+...+.|++..-.. .+...+-...+..+..+.+... ++.+...+-..+...+-..+-
T Consensus 1056 ~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~ 1135 (1692)
T KOG1020|consen 1056 AYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGM 1135 (1692)
T ss_pred HHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcch
Confidence 1 1112222221110 0112234444333211 1223344444444444443322 223333344444444434444
Q ss_pred HHHHHHHHHHHHHHHHhCCCcc-ccchHHHHHHhcC-------CC----cHHHHHHHHHhHHHHHhhhCh----------
Q 010290 256 RVRYMVANQLYELCEAVGPEPT-RSDVVPAYVRLLR-------DN----EAEVRIAAAGKVTKICRILNP---------- 313 (513)
Q Consensus 256 ~vr~~~~~~l~~l~~~~~~~~~-~~~ll~~l~~~l~-------d~----~~~vr~~a~~~l~~~~~~~~~---------- 313 (513)
.+-..++.+++.++..+..... .......+.+.+. ++ ....-...+-.+|.++..+.-
T Consensus 1136 a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~ 1215 (1692)
T KOG1020|consen 1136 ATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTF 1215 (1692)
T ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccc
Confidence 4555666777777765443321 1233333333331 22 111222344556666664311
Q ss_pred ----HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHH--HHHHHHHHHHhhh
Q 010290 314 ----ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDV--RLNIISKLDQVNQ 387 (513)
Q Consensus 314 ----~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v--r~~a~~~l~~i~~ 387 (513)
+...+.++-++..+..+.+-.+|..++..++.+|-..+.-+....+...+...+.|.+..+ +..+...+..+..
T Consensus 1216 ~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~ 1295 (1692)
T KOG1020|consen 1216 LQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLL 1295 (1692)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 1345667777777778888999999999999999777766666777777777777765433 3344443333321
Q ss_pred h----h--------------------------hh----hhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhH
Q 010290 388 V----I--------------------------GI----DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 433 (513)
Q Consensus 388 ~----~--------------------------~~----~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~ 433 (513)
. + |. ..+.+..++.+.+.+-+.+-++|..|++.+..+..+.=-.
T Consensus 1296 eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVh-- 1373 (1692)
T KOG1020|consen 1296 EEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVH-- 1373 (1692)
T ss_pred HHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCC--
Confidence 1 0 11 1134556677777788999999999999998887651111
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh
Q 010290 434 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP 469 (513)
Q Consensus 434 ~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~ 469 (513)
..+.+|+++.+-.|+..+.|..|-..+..|-+.+..
T Consensus 1374 P~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY~g 1409 (1692)
T KOG1020|consen 1374 PVHCVPTLIALETDPSQAIRHVADELLKEIDEKYEG 1409 (1692)
T ss_pred ccchhhhheeecCChHHHHHHHHHHHHHHHHHhhHH
Confidence 125789999999999999999999999998876654
No 62
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.15 E-value=5.1e-09 Score=93.06 Aligned_cols=195 Identities=19% Similarity=0.151 Sum_probs=130.3
Q ss_pred hhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHH
Q 010290 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELR 165 (513)
Q Consensus 86 ~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~ 165 (513)
.+.+.|+.-.++.++..|..++..+..++..-.+......+.+.+ .+++
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l-------------------------------~~~~ 55 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECL-------------------------------RQLL 55 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHH-------------------------------H---
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHH-------------------------------HHhH
Confidence 444455444556777777777777777766541111111122222 2345
Q ss_pred HHHHHHcCCCchHHHHHHHHhHHHHHHHhhhh--hhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhH-
Q 010290 166 TIYRQLCQDDMPMVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHI- 242 (513)
Q Consensus 166 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l- 242 (513)
..+...+.|....|-+.++.++..++..++.. .+...++|.+.+.+.|+...+|..|..++..++..++. .+.+
T Consensus 56 ~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~---~~~~~ 132 (228)
T PF12348_consen 56 DAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY---SPKIL 132 (228)
T ss_dssp HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc---HHHHH
Confidence 66777788888889999999999999988864 34567899999999999999999999999999998771 2334
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC--CCcc-----ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH
Q 010290 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPT-----RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE 314 (513)
Q Consensus 243 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~~~-----~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 314 (513)
.+.+....++.++.+|..++..+..+....+ .... .+.+.+.+..++.|.+++||.+|-.++..+.+.++..
T Consensus 133 ~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 133 LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 7888889999999999999999999988877 1111 2468899999999999999999999999998877653
No 63
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=99.14 E-value=1.4e-09 Score=104.80 Aligned_cols=254 Identities=15% Similarity=0.175 Sum_probs=185.5
Q ss_pred cCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcC
Q 010290 172 CQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ 251 (513)
Q Consensus 172 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~ 251 (513)
+.-++..-|......|......++.+.....++|.+...+.=.+ --...+..+-.++..+...++...++|++.+++.
T Consensus 263 l~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~ 340 (690)
T KOG1243|consen 263 LRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFK 340 (690)
T ss_pred cccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhc
Confidence 34455666777777777777777777777888887766554222 1122233344445555556677778888888888
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCC
Q 010290 252 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS 331 (513)
Q Consensus 252 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~ 331 (513)
..+-.+|...++.+......+.++...+++.|.+...+.|+++.+|..++.++..+...++......+++.++..+..|.
T Consensus 341 ~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~ 420 (690)
T KOG1243|consen 341 SPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDE 420 (690)
T ss_pred CcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccc
Confidence 88888888888888888888887777788888888888888888888888888888888777766677777887777777
Q ss_pred cHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCCh
Q 010290 332 SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW 411 (513)
Q Consensus 332 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~ 411 (513)
...+|....-+++.++..+........+...+...++|+...-|.++...+....+.+........++|.+..+.-|++.
T Consensus 421 ~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~ 500 (690)
T KOG1243|consen 421 HGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEK 500 (690)
T ss_pred cCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCccc
Confidence 88888888888888877765544333333444556788888888888888888888777777778888888888888888
Q ss_pred hHHHHHHHHHHHHHHH
Q 010290 412 RVRLAIIEYIPLLASQ 427 (513)
Q Consensus 412 ~vR~~~~~~l~~l~~~ 427 (513)
.+|..+..++......
T Consensus 501 ~vr~~a~~~i~~fl~k 516 (690)
T KOG1243|consen 501 TVRDTAEKAIRQFLEK 516 (690)
T ss_pred chhhHHHHHHHHHHhh
Confidence 8888777777655543
No 64
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=2.3e-07 Score=89.40 Aligned_cols=219 Identities=12% Similarity=0.117 Sum_probs=148.0
Q ss_pred chhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHH
Q 010290 81 LEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEAL 160 (513)
Q Consensus 81 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~ 160 (513)
......+.+-+..++++.-+.+|..|+-.+-++.-..+.. ....+|.+..-.+|+++.+..+|+..+..+++.-+..+
T Consensus 139 pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA--lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 139 PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA--LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh--HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 4556677777888889999999999999998888776542 33457888888899999999999999999998877765
Q ss_pred HHHHHHHHHHHcCC--CchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhcc---CC-
Q 010290 161 KTELRTIYRQLCQD--DMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL---LE- 234 (513)
Q Consensus 161 ~~~l~~~l~~l~~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~---~~- 234 (513)
. .+-|.|.+++.+ .+|.+ ....+.++.+...- +.....++|.+.+++..... .....+|+..+... .|
T Consensus 217 L-~LAP~ffkllttSsNNWmL-IKiiKLF~aLtplE--PRLgKKLieplt~li~sT~A--mSLlYECvNTVVa~s~s~g~ 290 (877)
T KOG1059|consen 217 L-QLAPLFYKLLVTSSNNWVL-IKLLKLFAALTPLE--PRLGKKLIEPITELMESTVA--MSLLYECVNTVVAVSMSSGM 290 (877)
T ss_pred c-cccHHHHHHHhccCCCeeh-HHHHHHHhhccccC--chhhhhhhhHHHHHHHhhHH--HHHHHHHHHHheeehhccCC
Confidence 4 356777776643 35543 33444444444321 24455677777777765432 12223344443333 11
Q ss_pred -h-hhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHh
Q 010290 235 -P-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR 309 (513)
Q Consensus 235 -~-~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~ 309 (513)
+ ......-+.-+..+++|.++..+.-.+-+++.++...... ...-...+++++.|.++.||..|+..+-.+..
T Consensus 291 ~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~--Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 291 SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA--VQAHKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH--HHHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 1 1111223444555788999999999999999998763332 23456788999999999999999887766543
No 65
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=3e-07 Score=89.13 Aligned_cols=398 Identities=13% Similarity=0.144 Sum_probs=221.2
Q ss_pred HHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhh--
Q 010290 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLL-- 88 (513)
Q Consensus 12 ~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~-- 88 (513)
..+.+.|.++|...+..|++.+... .+.++....-++..+.- +...+.++++.....+..+-+.-+.....++++
T Consensus 23 ~~ik~~Lek~~~~~KIeamK~ii~~--mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILv 100 (948)
T KOG1058|consen 23 DEIKEKLEKGDDEVKIEAMKKIIAL--MLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILV 100 (948)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHH--HHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHH
Confidence 4678889999999999999887544 33444443333333333 667788888888777665555444334444433
Q ss_pred -HHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH--HHHHHH
Q 010290 89 -PPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA--LKTELR 165 (513)
Q Consensus 89 -~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~--~~~~l~ 165 (513)
..+..-++++|..+|...++-++++ ....+.+.++|.+....+.....+|..|.-++..+++.+..- ..++++
T Consensus 101 cna~RkDLQHPNEyiRG~TLRFLckL----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi 176 (948)
T KOG1058|consen 101 CNAYRKDLQHPNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELI 176 (948)
T ss_pred HHHHhhhccCchHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHH
Confidence 3455567889999999866555444 445566778999999999999999999999999888874333 345566
Q ss_pred HHHHHHcCCCchHHHHHHHHhHHHH------------HHHhhh--hh------------------hHHHHHHHHHHhhhc
Q 010290 166 TIYRQLCQDDMPMVRRSAATNLGKF------------AATVEA--AH------------------LKSEIMSIFEELTQD 213 (513)
Q Consensus 166 ~~l~~l~~d~~~~vr~~a~~~l~~l------------~~~~~~--~~------------------~~~~l~~~l~~l~~d 213 (513)
..++..-+ ++.-++.|.-.|... ...++. +. .....+..+..+++.
T Consensus 177 ~~fL~~e~--DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~s 254 (948)
T KOG1058|consen 177 ESFLLTEQ--DPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSS 254 (948)
T ss_pred HHHHHhcc--CchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhc
Confidence 55554433 344444443332211 111110 00 011122222333333
Q ss_pred cchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCC
Q 010290 214 DQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN 292 (513)
Q Consensus 214 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~ 292 (513)
+++.|+..|..++..+... .......-..+..++ ..++-.++......|..+.. ..+...+.+.--+++.+..+
T Consensus 255 tssaV~fEaa~tlv~lS~~---p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~il~~l~mDvLrvLss~ 329 (948)
T KOG1058|consen 255 TSSAVIFEAAGTLVTLSND---PTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEKILQGLIMDVLRVLSSP 329 (948)
T ss_pred CCchhhhhhcceEEEccCC---HHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHHHHHHHHHHHHHHcCcc
Confidence 3333433333333222211 000111111122222 11222344444444444331 11112344555566788899
Q ss_pred cHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhh---cCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCC
Q 010290 293 EAEVRIAAAGKVTKICRILNPELAIQHILPCVKEL---SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD 369 (513)
Q Consensus 293 ~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~---~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 369 (513)
+-+||..++...-.+...-.-+++.+.+-.-+..- -.|.+...|...++.+..++-.++. ....++|.+++++.|
T Consensus 330 dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~ll~fisD 407 (948)
T KOG1058|consen 330 DLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLLLDFISD 407 (948)
T ss_pred cccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHHHHHhcc
Confidence 99999999876655555433333322222222111 1355677899999999999876654 457789999999999
Q ss_pred CChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhc-CCChhHHHHHHHHHHHHHH
Q 010290 370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLAS 426 (513)
Q Consensus 370 ~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~-~~~~~vR~~~~~~l~~l~~ 426 (513)
.++.--..++..+...++.+.. +...++..+.+.+. -.+..+-.++++.+|..+.
T Consensus 408 ~N~~aas~vl~FvrE~iek~p~--Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 408 SNEAAASDVLMFVREAIEKFPN--LRASIIEKLLETFPQIRSSKICRGALWILGEYCE 463 (948)
T ss_pred CCHHHHHHHHHHHHHHHHhCch--HHHHHHHHHHHhhhhhcccccchhHHHHHHHHHh
Confidence 9988777777777777665543 22334444433221 1122233455555555443
No 66
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=7e-07 Score=86.25 Aligned_cols=313 Identities=16% Similarity=0.118 Sum_probs=199.3
Q ss_pred hhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHH
Q 010290 147 GLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGC 226 (513)
Q Consensus 147 ~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l 226 (513)
-+++-+.....++...++.+-+..++++.-+.||+.|...+-.+.-.++ ......+|-|.+-+.|+++.|..+|+..+
T Consensus 128 iAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP--eAlr~~FprL~EkLeDpDp~V~SAAV~VI 205 (877)
T KOG1059|consen 128 LALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP--EALRPCFPRLVEKLEDPDPSVVSAAVSVI 205 (877)
T ss_pred heecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh--HhHhhhHHHHHHhccCCCchHHHHHHHHH
Confidence 3444455666777778888899999999999999999998888876654 34566788889999999999999999999
Q ss_pred HHhhccCChhhhhhhHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHhCCCc-cccchHHHHHHhcCCCcH-HHHHHHHH
Q 010290 227 GALGKLLEPQDCVAHILPVIVNFSQ--DKSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYVRLLRDNEA-EVRIAAAG 302 (513)
Q Consensus 227 ~~l~~~~~~~~~~~~l~~~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~ll~~l~~~l~d~~~-~vr~~a~~ 302 (513)
..++..-|+. + -.+-|.+.+++. +.+|.. --.++.++.+... +. ...+++|.+.+++..+.. ++--.++.
T Consensus 206 CELArKnPkn-y-L~LAP~ffkllttSsNNWmL-IKiiKLF~aLtpl---EPRLgKKLieplt~li~sT~AmSLlYECvN 279 (877)
T KOG1059|consen 206 CELARKNPQN-Y-LQLAPLFYKLLVTSSNNWVL-IKLLKLFAALTPL---EPRLGKKLIEPITELMESTVAMSLLYECVN 279 (877)
T ss_pred HHHHhhCCcc-c-ccccHHHHHHHhccCCCeeh-HHHHHHHhhcccc---CchhhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 9999876653 1 235666766664 457742 2233444444321 11 135788888888876542 11112222
Q ss_pred hHH--HHHhhh-ChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHH
Q 010290 303 KVT--KICRIL-NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNII 379 (513)
Q Consensus 303 ~l~--~~~~~~-~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~ 379 (513)
++- .+.... +.....+-.+..+..++.|+++..|.-.+-+++.+++..... ......+++++|.|.++.+|..|+
T Consensus 280 TVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~--Vqa~kdlIlrcL~DkD~SIRlrAL 357 (877)
T KOG1059|consen 280 TVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA--VQAHKDLILRCLDDKDESIRLRAL 357 (877)
T ss_pred HheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH--HHHhHHHHHHHhccCCchhHHHHH
Confidence 111 111111 122333455667778889999999999999999998765543 344567889999999999999999
Q ss_pred HHHHHhhhhh----------------hhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHH---HHHHHhChhh--------
Q 010290 380 SKLDQVNQVI----------------GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP---LLASQLGVGF-------- 432 (513)
Q Consensus 380 ~~l~~i~~~~----------------~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~---~l~~~~~~~~-------- 432 (513)
..+..++..- ....+.+.++..+...+.-.+|..-...-+.++ .++...|.+.
T Consensus 358 dLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi 437 (877)
T KOG1059|consen 358 DLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQI 437 (877)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHH
Confidence 8877665421 112234455555555555555544433333333 3333222211
Q ss_pred ---------HHHHHHHHHHHHhcCc-----------hhHHHHHHHHHHHHHHHHhCh
Q 010290 433 ---------FDDKLGALCMQWLKDK-----------VYSIRDAAANNVKRLAEEFGP 469 (513)
Q Consensus 433 ---------~~~~~~~~l~~~l~d~-----------~~~VR~~a~~~l~~l~~~~~~ 469 (513)
..+..+..+..++.|+ -++|-.+|++++|...+.+..
T Consensus 438 ~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven 494 (877)
T KOG1059|consen 438 IDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVEN 494 (877)
T ss_pred HHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhC
Confidence 1122333444455554 467888999999998887654
No 67
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=99.07 E-value=4.4e-09 Score=101.41 Aligned_cols=252 Identities=15% Similarity=0.182 Sum_probs=203.4
Q ss_pred chhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcH
Q 010290 215 QDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEA 294 (513)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~ 294 (513)
+.+.|..-...|....+.++++-....++|.+...+.-.+ --..++.-+-.+...+....+...++|.+.++++.++.
T Consensus 267 s~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr 344 (690)
T KOG1243|consen 267 SVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDR 344 (690)
T ss_pred cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcCcch
Confidence 4455666666666666777777777778888877664333 11112223333444445555677899999999999999
Q ss_pred HHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHH
Q 010290 295 EVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDV 374 (513)
Q Consensus 295 ~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v 374 (513)
.||..-++.+..+.+.+.++.+.+.++|.+...+.|.+..+|...+.++..++..+++......++..+..+-.|++..+
T Consensus 345 ~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~i 424 (690)
T KOG1243|consen 345 QIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGI 424 (690)
T ss_pred HHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcc
Confidence 99999999999999999999888999999999999999999999999999999999999777889999988888999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHH
Q 010290 375 RLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRD 454 (513)
Q Consensus 375 r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~ 454 (513)
|....-++++|...+....-...+...+..-+.|+-..-|.+++..+......+.......+++|.+..+.-|++..||.
T Consensus 425 rtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr~ 504 (690)
T KOG1243|consen 425 RTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTVRD 504 (690)
T ss_pred cccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccchhh
Confidence 99999999999888765554344555666677888888999999999888777777777788999999999999999999
Q ss_pred HHHHHHHHHHHHhC
Q 010290 455 AAANNVKRLAEEFG 468 (513)
Q Consensus 455 ~a~~~l~~l~~~~~ 468 (513)
.|.+++........
T Consensus 505 ~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 505 TAEKAIRQFLEKLE 518 (690)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999988766543
No 68
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=2e-05 Score=79.48 Aligned_cols=186 Identities=15% Similarity=0.102 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHhCCCccccchHHHHHHhcC------C--CcHHHHHHHHHhHHHHHhhhChH-----HHHHhhhhhhhh
Q 010290 260 MVANQLYELCEAVGPEPTRSDVVPAYVRLLR------D--NEAEVRIAAAGKVTKICRILNPE-----LAIQHILPCVKE 326 (513)
Q Consensus 260 ~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~------d--~~~~vr~~a~~~l~~~~~~~~~~-----~~~~~l~~~l~~ 326 (513)
++...+..++..-|++. .+.+++++...++ . .++.-+.+|+..++.++..+... .+...+.+.+..
T Consensus 391 Aa~~~l~~~~~KR~ke~-l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP 469 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRGKET-LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFP 469 (1010)
T ss_pred HHHHHHHHHHHhcchhh-hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhH
Confidence 45556666666655554 4677777777765 2 24566778999999998776432 222344555556
Q ss_pred hcCCCcHHHHHHHHHHHHHhc-hhhCHHHHHHhHHHHHHHhcC-CCChHHHHHHHHHHHHhhhhhhh--hhhhhhHHHHH
Q 010290 327 LSSDSSQHVRSALATVIMGMA-PILGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAI 402 (513)
Q Consensus 327 ~~~d~~~~vr~~~~~~l~~l~-~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~i~~~~~~--~~~~~~l~~~l 402 (513)
.++++.-..|..+|+.++.++ ..+.........+....+++. |.+-.||..|+-+|..++..... +.+.+.+-|.+
T Consensus 470 ~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~m 549 (1010)
T KOG1991|consen 470 EFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIM 549 (1010)
T ss_pred hhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHH
Confidence 668899999999999999998 555555555667777777777 88889999999999999876542 23444444444
Q ss_pred HH---hhcCCChhHHHHHHH-HHHHHHHHhChh--hHHHHHHHHHHHHhc
Q 010290 403 VE---LAEDRHWRVRLAIIE-YIPLLASQLGVG--FFDDKLGALCMQWLK 446 (513)
Q Consensus 403 ~~---l~~~~~~~vR~~~~~-~l~~l~~~~~~~--~~~~~~~~~l~~~l~ 446 (513)
.+ +.+.-....-...++ .++.+.+.+.+- ...+++...+.+++.
T Consensus 550 q~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~ 599 (1010)
T KOG1991|consen 550 QELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQ 599 (1010)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHh
Confidence 44 444433322222222 223333333221 133567777777766
No 69
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=1.4e-05 Score=81.98 Aligned_cols=452 Identities=15% Similarity=0.115 Sum_probs=249.1
Q ss_pred hhcHHHHHHHhChHhhhhhhhhhhhh---cc-CCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhccchhHHHHH
Q 010290 30 IRRLSTIARALGEERTRKELIPFLSE---NN-DDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDK 105 (513)
Q Consensus 30 ~~~l~~i~~~~~~~~~~~~l~~~l~~---~~-~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~ 105 (513)
++.+..+...+|+ ..-.++.|-+.. +. +++...+...-.++|..+..+|.+. .-.++|+ .+..+.....|.=
T Consensus 371 lqi~s~~fek~G~-~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~-vL~~lpL--nl~~~s~~~~RsW 446 (1176)
T KOG1248|consen 371 LQILSALFEKCGE-LSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPER-VLTILPL--NLHAESLSFTRSW 446 (1176)
T ss_pred HHHHHHHHHHhhh-hcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHH-HHHHcch--hccccccccchhH
Confidence 4455555566665 334566666555 11 2333344455556665555555322 2222222 1222233333333
Q ss_pred HHHHHHHHHhhcChHHHHhhHHHHHHHhhc------CCCcch---hhhHHhhhHhhcCCC--CHH---HHHHHHHHHHHH
Q 010290 106 AVESLCRIGSQMREQDVVEHFIPLVKRLAA------GEWFTA---RVSSCGLFHVAYPSA--PEA---LKTELRTIYRQL 171 (513)
Q Consensus 106 a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~------d~~~~~---R~~~~~~l~~~~~~~--~~~---~~~~l~~~l~~l 171 (513)
-+-.|..-...-+-..+.++++|+...+.. +....+ +..+.++.+.+-.+| +.+ -...+.+.+...
T Consensus 447 LLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~a 526 (1176)
T KOG1248|consen 447 LLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAA 526 (1176)
T ss_pred hHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHH
Confidence 233333333333345566677777765421 222222 222222222221111 222 245666777766
Q ss_pred cCCCchHHHHHHHHhHHHHHHHhhh--------h---hhHHHHHHHHHHhhhccc------hhHHHHHHHHHH-HhhccC
Q 010290 172 CQDDMPMVRRSAATNLGKFAATVEA--------A---HLKSEIMSIFEELTQDDQ------DSVRLLAVEGCG-ALGKLL 233 (513)
Q Consensus 172 ~~d~~~~vr~~a~~~l~~l~~~~~~--------~---~~~~~l~~~l~~l~~d~~------~~vr~~a~~~l~-~l~~~~ 233 (513)
+... ++.|..+|.+|..+.....+ + .....++|.+.+...... ...|..-+..+. ......
T Consensus 527 l~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t 605 (1176)
T KOG1248|consen 527 LLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVT 605 (1176)
T ss_pred Hhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcc
Confidence 6543 49999999999999876411 1 122345666555543322 234444444444 222223
Q ss_pred ChhhhhhhHHHHHHHhcCCCCHHHH----HHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHh
Q 010290 234 EPQDCVAHILPVIVNFSQDKSWRVR----YMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR 309 (513)
Q Consensus 234 ~~~~~~~~l~~~l~~~~~d~~~~vr----~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~ 309 (513)
+. +....+...+.....+.+..++ .+.+..+..++....... ...+....-..-+..+..++..+...|..++.
T Consensus 606 ~~-dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~-vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~ 683 (1176)
T KOG1248|consen 606 PT-DVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQ-VSKLFTVDPEFENSSSTKVQKKAYRLLEELSS 683 (1176)
T ss_pred cH-HHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchh-HHHHHHhhHHhhccccHHHHHHHHHHHHHHhc
Confidence 32 3344455555555555543332 223333333332222211 11222122222334478899999999999988
Q ss_pred hhChH----HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHH--HHhHHHHHHHhcCCCChHHHHHHHHHHH
Q 010290 310 ILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLD 383 (513)
Q Consensus 310 ~~~~~----~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 383 (513)
.-..+ .....+...+..-+++.....|...+.++..+.+.++.+.. ....+|-++=.+++.+..-|..+..+|.
T Consensus 684 ~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~ 763 (1176)
T KOG1248|consen 684 SPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLV 763 (1176)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHH
Confidence 62222 23345555566666778888999999999999998884432 3445555555559999999999999998
Q ss_pred Hhhh--h---hhhhh---hhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhCh---hhHHHHHHHHHHHHhcCchhHH
Q 010290 384 QVNQ--V---IGIDL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSI 452 (513)
Q Consensus 384 ~i~~--~---~~~~~---~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~d~~~~V 452 (513)
.++. . .|.+. ..+..++.+...+-.....++..-+-++..+....+. ..+...++..+--++....+++
T Consensus 764 ~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI 843 (1176)
T KOG1248|consen 764 FIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREI 843 (1176)
T ss_pred HHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHH
Confidence 8872 2 24333 2233444444443333444444445666666655322 3345568888888999999999
Q ss_pred HHHHHHHHHHHHHHhChhhH---hhhhHHHHHhhhcCcc
Q 010290 453 RDAAANNVKRLAEEFGPDWA---MQHIVPQVALIKSSRN 488 (513)
Q Consensus 453 R~~a~~~l~~l~~~~~~~~~---~~~i~~~L~~~~~~~~ 488 (513)
+.+|+.++..++..+..... .+.++|.+..+.++.+
T Consensus 844 ~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k 882 (1176)
T KOG1248|consen 844 AKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHK 882 (1176)
T ss_pred HHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhh
Confidence 99999999999998887644 3678999999888853
No 70
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=1.1e-05 Score=81.09 Aligned_cols=330 Identities=14% Similarity=0.120 Sum_probs=195.9
Q ss_pred cchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh-------------hhhHHHHHH
Q 010290 139 FTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-------------AHLKSEIMS 205 (513)
Q Consensus 139 ~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-------------~~~~~~l~~ 205 (513)
..+|..-..++..+..+--++.++.+++....++++++...-..+.-++..+++...- +.+.+.++.
T Consensus 103 ~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~ 182 (1010)
T KOG1991|consen 103 ELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQ 182 (1010)
T ss_pred hHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHH
Confidence 4456666666655555544567899999999999999988888888999998886531 122334444
Q ss_pred HHHHhhhccchhH---HHHHHHHHHHhhcc-CChh----hhhhhHHHHHHHhcC-----------------CCCHHHHHH
Q 010290 206 IFEELTQDDQDSV---RLLAVEGCGALGKL-LEPQ----DCVAHILPVIVNFSQ-----------------DKSWRVRYM 260 (513)
Q Consensus 206 ~l~~l~~d~~~~v---r~~a~~~l~~l~~~-~~~~----~~~~~l~~~l~~~~~-----------------d~~~~vr~~ 260 (513)
.+..++.+++... .+..++..-..+.. +|.. .....-+..+...++ .+=|++++=
T Consensus 183 ~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKW 262 (1010)
T KOG1991|consen 183 IFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKW 262 (1010)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHH
Confidence 4455666654432 22233322222222 2321 122222333333221 233678888
Q ss_pred HHHHHHHHHHHhCCCccc------------c----chHHHHHHhcC---C---CcHHHHHHHHHhHHHHHhh------hC
Q 010290 261 VANQLYELCEAVGPEPTR------------S----DVVPAYVRLLR---D---NEAEVRIAAAGKVTKICRI------LN 312 (513)
Q Consensus 261 ~~~~l~~l~~~~~~~~~~------------~----~ll~~l~~~l~---d---~~~~vr~~a~~~l~~~~~~------~~ 312 (513)
++..+.++.+.+|+.... . .++..+++.+. . -.+.|-.-++..+...... ++
T Consensus 263 a~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~ 342 (1010)
T KOG1991|consen 263 ALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLK 342 (1010)
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 888999999888864321 1 12222222221 0 1122322232222221110 01
Q ss_pred hH---HHHHhhhhhhhh-------hcCCCcHHHHH-------------HHHHHHHHhchhhCHHHHHHhHHHHHHHhcC-
Q 010290 313 PE---LAIQHILPCVKE-------LSSDSSQHVRS-------------ALATVIMGMAPILGKDATIEQLLPIFLSLLK- 368 (513)
Q Consensus 313 ~~---~~~~~l~~~l~~-------~~~d~~~~vr~-------------~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~- 368 (513)
|. .+.+.++|.+.- +-+|+...+|. ++...+..++..-|++.+ +.+++.+.+.++
T Consensus 343 PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l-~k~l~F~~~Il~~ 421 (1010)
T KOG1991|consen 343 PHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETL-PKILSFIVDILTR 421 (1010)
T ss_pred hHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhh-hhHHHHHHHHHHh
Confidence 10 112233344321 11355556665 677888888887777654 455666666665
Q ss_pred -----C--CChHHHHHHHHHHHHhhhhhhhh-----hhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHH-HhChhhHHH
Q 010290 369 -----D--EFPDVRLNIISKLDQVNQVIGID-----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS-QLGVGFFDD 435 (513)
Q Consensus 369 -----d--~~~~vr~~a~~~l~~i~~~~~~~-----~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~-~~~~~~~~~ 435 (513)
. .++--...|+..++.++..+... .+...+.+.+...++++--..|..||+.++.++. .+.......
T Consensus 422 ~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~ 501 (1010)
T KOG1991|consen 422 YKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS 501 (1010)
T ss_pred hcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH
Confidence 2 24556678999999998766433 2445667777777888888899999999999983 355544455
Q ss_pred HHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhCh
Q 010290 436 KLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGP 469 (513)
Q Consensus 436 ~~~~~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~ 469 (513)
..+....+++. |++-.||..|+-++..+..+...
T Consensus 502 ~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~ 536 (1010)
T KOG1991|consen 502 EALELTHNCLLNDNELPVRVEAALALQSFISNQEQ 536 (1010)
T ss_pred HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchh
Confidence 67788888776 99999999999999999887653
No 71
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=4.3e-05 Score=78.63 Aligned_cols=346 Identities=14% Similarity=0.153 Sum_probs=215.8
Q ss_pred hHHHHHHHhhcCCCcchhhhHHhhhHhhcCCC---CHH---------HHHHHHHHHHHHcCCC------chHHHHHHHHh
Q 010290 125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSA---PEA---------LKTELRTIYRQLCQDD------MPMVRRSAATN 186 (513)
Q Consensus 125 ~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~---~~~---------~~~~l~~~l~~l~~d~------~~~vr~~a~~~ 186 (513)
.+.|.+.....-. +..|...|..+..+++.. .+. +...+++.+++.-..+ ....|......
T Consensus 518 ~la~~l~~al~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~ 596 (1176)
T KOG1248|consen 518 DLAPILGAALLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEI 596 (1176)
T ss_pred HHHHHHHHHHhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHH
Confidence 3455554433332 377888888888777654 111 4456777777765443 23444444444
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHH----HHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHH
Q 010290 187 LGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLA----VEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA 262 (513)
Q Consensus 187 l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a----~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~ 262 (513)
+....-+.-+......+...+..+..+.+..++..- +..+..++...+.+. ...+.......-+..+..++.-+-
T Consensus 597 i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~-vs~l~~v~~~~e~~~~~~vQkK~y 675 (1176)
T KOG1248|consen 597 IRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQ-VSKLFTVDPEFENSSSTKVQKKAY 675 (1176)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchh-HHHHHHhhHHhhccccHHHHHHHH
Confidence 442111112233444555555666666655444332 233333444433332 233333333444555788888888
Q ss_pred HHHHHHHHHhCCCccc----cchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH--HHHHhhhhhhhhhcCCCcHHHH
Q 010290 263 NQLYELCEAVGPEPTR----SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVR 336 (513)
Q Consensus 263 ~~l~~l~~~~~~~~~~----~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr 336 (513)
..|..++..-..+.+. ..+...+..-+++.....|..++.+|..+.+..+.+ .+....+|-+.=..++.+..-|
T Consensus 676 rlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR 755 (1176)
T KOG1248|consen 676 RLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKAR 755 (1176)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHH
Confidence 8888887662222222 334455555566677888999999999999988744 3444555555444488888888
Q ss_pred HHHHHHHHHhch-----hhCHHH---HHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhh---hhhhhhhHHHHHHHh
Q 010290 337 SALATVIMGMAP-----ILGKDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVEL 405 (513)
Q Consensus 337 ~~~~~~l~~l~~-----~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~---~~~~~~~l~~~l~~l 405 (513)
..+..+|..++. ..|.+. ..+.+++.+...+-.+...++...+-++..+....+ .+...+.++..+.-.
T Consensus 756 ~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~ 835 (1176)
T KOG1248|consen 756 RNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLY 835 (1176)
T ss_pred hhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 888888877772 223333 334556665555444444444443455555543322 233446777777888
Q ss_pred hcCCChhHHHHHHHHHHHHHHHhChhhH---HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhH
Q 010290 406 AEDRHWRVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 472 (513)
Q Consensus 406 ~~~~~~~vR~~~~~~l~~l~~~~~~~~~---~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~ 472 (513)
+.+.+..++.+|+..+..++..++.... .+.++|.++.++.|....+|...-..+..+++.+|.+..
T Consensus 836 L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eL 905 (1176)
T KOG1248|consen 836 LASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEEL 905 (1176)
T ss_pred HhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHH
Confidence 8999999999999999999998877643 456899999999999999999999999999999998644
No 72
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=1.3e-06 Score=85.28 Aligned_cols=424 Identities=13% Similarity=0.115 Sum_probs=187.4
Q ss_pred HHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhhHHH
Q 010290 13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPL 91 (513)
Q Consensus 13 ~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l 91 (513)
.+.+.+++.|+..|.....++...+..- .+. --....+.. .....+..|..|.+.|-.+... .....+--++
T Consensus 68 ~~tKlfQskd~~LRr~vYl~Ikels~is-edv--iivtsslmkD~t~~~d~yr~~AiR~L~~I~d~----~m~~~iery~ 140 (865)
T KOG1078|consen 68 AITKLFQSKDVSLRRMVYLAIKELSKIS-EDV--IIVTSSLMKDMTGKEDLYRAAAIRALCSIIDG----TMLQAIERYM 140 (865)
T ss_pred HHHHHHhhcCHHHHHHHHHHHhhccccc-hhh--hhhhHHHHhhccCCCcchhHHHHHHHHhhcCc----chhHHHHHHH
Confidence 3556788999999988877766553211 111 011122222 3445566777777777666552 2233445566
Q ss_pred HHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHH-
Q 010290 92 ETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQ- 170 (513)
Q Consensus 92 ~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~- 170 (513)
.+...|.++.++..|+-.=-.+... ..+.... -...+.....+.+.-+++.+..++..+.++-.- ....++..+..
T Consensus 141 kqaivd~~~avSsaalvss~hll~~-~~~~vkr-w~neiqea~~s~~~m~QyHalglLyqirk~drl-a~sklv~~~~~~ 217 (865)
T KOG1078|consen 141 KQAIVDKNPAVSSAALVSSYHLLPI-SFDVVKR-WANEVQEAVNSDNIMVQYHALGLLYQIRKNDRL-AVSKLVQKFTRG 217 (865)
T ss_pred HhHeeccccccchHHHHHHhhhhcc-cHHHHHH-HHHhhhhccCcHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHccc
Confidence 6666777777766554222222211 1110000 011111112222223344444444433332111 11112222221
Q ss_pred HcCCCc--hHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHH
Q 010290 171 LCQDDM--PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN 248 (513)
Q Consensus 171 l~~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 248 (513)
.+.++- +..-+.+++.+... +.....+.|.+..++.+..+.|-..|..++..+....+.+ ....+..+..
T Consensus 218 ~~~~~~A~~~lir~~~~~l~~~------~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~--l~pavs~Lq~ 289 (865)
T KOG1078|consen 218 SLKSPLAVCMLIRIASELLKEN------QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRE--LAPAVSVLQL 289 (865)
T ss_pred cccchhHHHHHHHHHHHHhhhc------ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhh--cchHHHHHHH
Confidence 111111 11111122222221 2234445555556666555556655666555555444432 1224555555
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhc
Q 010290 249 FSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS 328 (513)
Q Consensus 249 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 328 (513)
+++.+....|.++...|.+++...+..... --.-+..+..|.+..+-. -++..+.+. |.+.-...++..+..+.
T Consensus 290 flssp~~~lRfaAvRtLnkvAm~~P~~v~~--cN~elE~lItd~NrsIat---~AITtLLKT-G~e~sv~rLm~qI~~fv 363 (865)
T KOG1078|consen 290 FLSSPKVALRFAAVRTLNKVAMKHPQAVTV--CNLDLESLITDSNRSIAT---LAITTLLKT-GTESSVDRLMKQISSFV 363 (865)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHhCCccccc--cchhHHhhhcccccchhH---HHHHHHHHh-cchhHHHHHHHHHHHHH
Confidence 566666666666666666666543332211 112233344455433322 223333332 22222233333333333
Q ss_pred CCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCC-CChHHHHHHHHHHHHhhh------------------hh
Q 010290 329 SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQ------------------VI 389 (513)
Q Consensus 329 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~i~~------------------~~ 389 (513)
.|-+...+..++.++..++..++... ..+++.+.+.|.+ +..+-+.+.+.++..+++ ..
T Consensus 364 ~disDeFKivvvdai~sLc~~fp~k~--~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDc 441 (865)
T KOG1078|consen 364 SDISDEFKIVVVDAIRSLCLKFPRKH--TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDC 441 (865)
T ss_pred HhccccceEEeHHHHHHHHhhccHHH--HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhc
Confidence 33333333333333333333333221 1122222222222 112222222222222221 11
Q ss_pred -------------hhh----hhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHH
Q 010290 390 -------------GID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSI 452 (513)
Q Consensus 390 -------------~~~----~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~V 452 (513)
|.+ ......+..+....-=.+..+|.+|+.++..++ .+.....+.+.-.+.+++.|++.+|
T Consensus 442 e~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~Ddev 519 (865)
T KOG1078|consen 442 EFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEV 519 (865)
T ss_pred cchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHH
Confidence 000 000111111111112236789999999999887 3455555667788888999999999
Q ss_pred HHHHHHHHHHHH
Q 010290 453 RDAAANNVKRLA 464 (513)
Q Consensus 453 R~~a~~~l~~l~ 464 (513)
|..|.-.+..+-
T Consensus 520 RdrAtf~l~~l~ 531 (865)
T KOG1078|consen 520 RDRATFYLKNLE 531 (865)
T ss_pred HHHHHHHHHHhh
Confidence 999988887776
No 73
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=6.1e-06 Score=80.83 Aligned_cols=407 Identities=14% Similarity=0.106 Sum_probs=229.6
Q ss_pred cCCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcC
Q 010290 57 NDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAG 136 (513)
Q Consensus 57 ~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d 136 (513)
++.++..|+..-..+++++.... +.. .+.+.+..-.+..++.+|..|+++|..+...-.-..+ -.++.+..-|
T Consensus 74 Qskd~~LRr~vYl~Ikels~ise--dvi-ivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~i----ery~kqaivd 146 (865)
T KOG1078|consen 74 QSKDVSLRRMVYLAIKELSKISE--DVI-IVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAI----ERYMKQAIVD 146 (865)
T ss_pred hhcCHHHHHHHHHHHhhccccch--hhh-hhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHH----HHHHHhHeec
Confidence 46677788888888888776322 111 2233333335566888999999998888664332333 3455666666
Q ss_pred CCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHH-hhhccc
Q 010290 137 EWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEE-LTQDDQ 215 (513)
Q Consensus 137 ~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-l~~d~~ 215 (513)
+.+.++.++.-.--.+.. ...+......+.......+.+..++.-+...|..+-+.-. ...+.++..+.+ .+.+
T Consensus 147 ~~~avSsaalvss~hll~-~~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~dr--la~sklv~~~~~~~~~~-- 221 (865)
T KOG1078|consen 147 KNPAVSSAALVSSYHLLP-ISFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKNDR--LAVSKLVQKFTRGSLKS-- 221 (865)
T ss_pred cccccchHHHHHHhhhhc-ccHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHccccccc--
Confidence 666655444322111222 2233334444455555556666777777777776654321 112222222221 1222
Q ss_pred hhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHH
Q 010290 216 DSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE 295 (513)
Q Consensus 216 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~ 295 (513)
+--+...+.....+...- ......+.+++...+.++...|-..++.++..+....+.+.. .-+..+..+++.+.+.
T Consensus 222 ~~A~~~lir~~~~~l~~~--~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~--pavs~Lq~flssp~~~ 297 (865)
T KOG1078|consen 222 PLAVCMLIRIASELLKEN--QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA--PAVSVLQLFLSSPKVA 297 (865)
T ss_pred hhHHHHHHHHHHHHhhhc--ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc--hHHHHHHHHhcCcHHH
Confidence 222222222222222222 223456899999999999999999999998888766555543 2666777788999999
Q ss_pred HHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHH---HHHHHhcCCCCh
Q 010290 296 VRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL---PIFLSLLKDEFP 372 (513)
Q Consensus 296 vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~---~~l~~~l~d~~~ 372 (513)
.|.+|...|..+....+.. ....-+-+..+.+|.+..+-.-++..+-.-.. +...+.++ +.+..-+.|+..
T Consensus 298 lRfaAvRtLnkvAm~~P~~--v~~cN~elE~lItd~NrsIat~AITtLLKTG~----e~sv~rLm~qI~~fv~disDeFK 371 (865)
T KOG1078|consen 298 LRFAAVRTLNKVAMKHPQA--VTVCNLDLESLITDSNRSIATLAITTLLKTGT----ESSVDRLMKQISSFVSDISDEFK 371 (865)
T ss_pred HHHHHHHHHHHHHHhCCcc--ccccchhHHhhhcccccchhHHHHHHHHHhcc----hhHHHHHHHHHHHHHHhccccce
Confidence 9999999999998765332 12233455667788888777766666544433 22233333 344455666666
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhc-CCChhHHHHHHHHHHHHHHHhChh---------------hHH--
Q 010290 373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG---------------FFD-- 434 (513)
Q Consensus 373 ~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~-~~~~~vR~~~~~~l~~l~~~~~~~---------------~~~-- 434 (513)
.|-..++.+|...... .+ ...++.+..++. ++.+..+.+.++++..++...... .+.
T Consensus 372 ivvvdai~sLc~~fp~---k~--~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i 446 (865)
T KOG1078|consen 372 IVVVDAIRSLCLKFPR---KH--TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQI 446 (865)
T ss_pred EEeHHHHHHHHhhccH---HH--HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHH
Confidence 5555555555444321 11 233444444332 334555555555555554421110 000
Q ss_pred ------------------HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhhcCcchHHH
Q 010290 435 ------------------DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKSSRNLVLN 492 (513)
Q Consensus 435 ------------------~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~~~~~~~r 492 (513)
..-+..+....-=.+..||.+|..++.++. .+.....+.+...|..++.|.+-..|
T Consensus 447 ~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevR 520 (865)
T KOG1078|consen 447 AVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVR 520 (865)
T ss_pred HHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHH
Confidence 011112222222235679999999999987 34444567888888889998866666
No 74
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.91 E-value=6.8e-06 Score=79.67 Aligned_cols=288 Identities=14% Similarity=0.132 Sum_probs=166.8
Q ss_pred hhHHHHHHHHHHHHHHhhcChHH--------HHhhHHHHHHHhhc-----CC--CcchhhhHHhhhHhhcCCCCHHHHHH
Q 010290 99 ETCVRDKAVESLCRIGSQMREQD--------VVEHFIPLVKRLAA-----GE--WFTARVSSCGLFHVAYPSAPEALKTE 163 (513)
Q Consensus 99 ~~~vR~~a~~~l~~l~~~~~~~~--------~~~~~~~~l~~l~~-----d~--~~~~R~~~~~~l~~~~~~~~~~~~~~ 163 (513)
+...-...+.++..+......+. ....++|.+.++.- +. ++.+-..+..++..+...++.+..++
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 44555666777777665542221 11225666554432 11 13444556777888888998886666
Q ss_pred HHHHHHHHcC----------CCc--hHHHHHHHHhHHHHHHHhhhhhh---HHHHHHHHHHhh-hccchhHHHHHHHHHH
Q 010290 164 LRTIYRQLCQ----------DDM--PMVRRSAATNLGKFAATVEAAHL---KSEIMSIFEELT-QDDQDSVRLLAVEGCG 227 (513)
Q Consensus 164 l~~~l~~l~~----------d~~--~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~l~-~d~~~~vr~~a~~~l~ 227 (513)
++..+..+.- +.+ +.......-.+..+...+.++.. ...++..+.++. +.+++..|..+.+++.
T Consensus 136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la 215 (415)
T PF12460_consen 136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLA 215 (415)
T ss_pred HHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 6655555433 111 11122222223333333333222 223444444443 3445889999999999
Q ss_pred HhhccCChhhhhhhHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHh--CCCccccchHHHHHHhcCCCcHHHHHHHHHhH
Q 010290 228 ALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAV--GPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304 (513)
Q Consensus 228 ~l~~~~~~~~~~~~l~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~--~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l 304 (513)
.+...+++++....++..+.... .......|..+.+.+.-+++.. ..+....+++..+..++.| +++...|++++
T Consensus 216 ~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f 293 (415)
T PF12460_consen 216 SLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAF 293 (415)
T ss_pred HHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHH
Confidence 99999877665556666655544 3444555666666666665543 2233345788888888888 67888899999
Q ss_pred HHHHhhhC---------------hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHH---HhHHHHHHHh
Q 010290 305 TKICRILN---------------PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI---EQLLPIFLSL 366 (513)
Q Consensus 305 ~~~~~~~~---------------~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~ 366 (513)
+.+....+ .+.+...++|.+.+...+.+...|.....++..+.+..+..... +.++|.+++.
T Consensus 294 ~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqs 373 (415)
T PF12460_consen 294 GILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQS 373 (415)
T ss_pred hhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 88775421 12344555666655555555556666666666666666655443 4566666666
Q ss_pred cCCCChHHHHHHHHHHHHhhhh
Q 010290 367 LKDEFPDVRLNIISKLDQVNQV 388 (513)
Q Consensus 367 l~d~~~~vr~~a~~~l~~i~~~ 388 (513)
|.-++..++.+++.++..+.+.
T Consensus 374 L~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 374 LSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred hCCCCHHHHHHHHHHHHHHHHc
Confidence 6666666666666666666543
No 75
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.5e-05 Score=68.80 Aligned_cols=388 Identities=12% Similarity=0.079 Sum_probs=208.6
Q ss_pred HHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH--------HHHHHHHHHHHHcCCCch
Q 010290 106 AVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA--------LKTELRTIYRQLCQDDMP 177 (513)
Q Consensus 106 a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~--------~~~~l~~~l~~l~~d~~~ 177 (513)
.+.++.++.+..........++|.+..-...++..++..++..++.+.+.++.. .-.++++.+...+...+.
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 555666666655555555666777776666677778888888888888777643 235678888899999999
Q ss_pred HHHHHHHHhHHHHHHHhhhhhhHHHHHH-----H--HHHhhhccchhHHHHHHHHHHHhhccCCh---hhhhhhHHHHHH
Q 010290 178 MVRRSAATNLGKFAATVEAAHLKSEIMS-----I--FEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIV 247 (513)
Q Consensus 178 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~-----~--l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~ 247 (513)
+|.+++.+.+..++..- ...+.++| - +.++....++-+|...++.+..+....+. +-..+.++..+.
T Consensus 143 eVAkAAiesikrialfp---aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLe 219 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALFP---AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLE 219 (524)
T ss_pred HHHHHHHHHHHHHHhcH---HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHH
Confidence 99999999999888642 11222221 1 11122233455666666666655544332 112233555555
Q ss_pred HhcC-CCCHHHHHHHHHHHHHHHHHhCCCccc--cchHHHHHHhcC--CCcHHHHHHHHHhHHHHHhhhChHH-------
Q 010290 248 NFSQ-DKSWRVRYMVANQLYELCEAVGPEPTR--SDVVPAYVRLLR--DNEAEVRIAAAGKVTKICRILNPEL------- 315 (513)
Q Consensus 248 ~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~ll~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~------- 315 (513)
.-+. .++.-|+..+++....++..-....+. +.+++.+.+.+. |++|--+..++. .+.+.+|.+.
T Consensus 220 aElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralm---gfgkffgkeaimdvsee 296 (524)
T KOG4413|consen 220 AELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALM---GFGKFFGKEAIMDVSEE 296 (524)
T ss_pred HHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHH---HHHHHhcchHHhhcCHH
Confidence 4443 356678999999888888765443332 346666666553 444433333433 3344444332
Q ss_pred -HHHhhhhhh---hhhcCCCcHHHHHHHHHHHHHhchhhCHHHHH-HhHHHHHHHh---cCCCC-hHHHHHHHHHHHHhh
Q 010290 316 -AIQHILPCV---KELSSDSSQHVRSALATVIMGMAPILGKDATI-EQLLPIFLSL---LKDEF-PDVRLNIISKLDQVN 386 (513)
Q Consensus 316 -~~~~l~~~l---~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~-~~l~~~l~~~---l~d~~-~~vr~~a~~~l~~i~ 386 (513)
..+.++-.+ ....+..++....+++.+++.+.......... ..=-|....+ ..|.+ ..-+.+++.+|..|.
T Consensus 297 aicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIa 376 (524)
T KOG4413|consen 297 AICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA 376 (524)
T ss_pred HHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence 112222122 23446677888899999999987654333222 1111222222 22332 234567778888876
Q ss_pred hhhhhh-----------hhhh------------hHHHHHHHhhcCCChhHHHHHHHHHHHHHHH--hChhhHHHHHHHHH
Q 010290 387 QVIGID-----------LLSQ------------SLLPAIVELAEDRHWRVRLAIIEYIPLLASQ--LGVGFFDDKLGALC 441 (513)
Q Consensus 387 ~~~~~~-----------~~~~------------~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~--~~~~~~~~~~~~~l 441 (513)
...... .+.. .-...+...++.+...+|.+++..+..++.. +-.+.|. -|-+
T Consensus 377 gelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeifa---keef 453 (524)
T KOG4413|consen 377 GELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIFA---KEEF 453 (524)
T ss_pred ccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHhc---Cccc
Confidence 543110 0000 1112344455566777777777777777643 1111111 1333
Q ss_pred HHHhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhhcCcchHHH-HHHHHHHHhcccceeehhccC
Q 010290 442 MQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKSSRNLVLN-SVLSLLKNAGIDAVFYMETRH 513 (513)
Q Consensus 442 ~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~~~~~~~r-~~~~~~~~i~~~~~~~~~~~~ 513 (513)
+....|.+.+--+.+-.+=-..++.+.+.+.+ .++..||+|+.- .-+.- +.-.=|||+..|
T Consensus 454 ieiVtDastEhaKaakdAkYeccKAiaeaflc-------aeffddPnrLklgdkLqE----avrsGPYmsKkh 515 (524)
T KOG4413|consen 454 IEIVTDASTEHAKAAKDAKYECCKAIAEAFLC-------AEFFDDPNRLKLGDKLQE----AVRSGPYMSKKH 515 (524)
T ss_pred eeeecccchhhHHHHHHHHHHHHHHHHHHHHH-------HHHcCChhhhhHHHHHHH----HhccCCcccccc
Confidence 34445555554444444444444444333322 245566666443 11111 112347887665
No 76
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.89 E-value=9.8e-07 Score=89.62 Aligned_cols=337 Identities=12% Similarity=0.054 Sum_probs=222.1
Q ss_pred HHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhh-HHHHH
Q 010290 126 FIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHL-KSEIM 204 (513)
Q Consensus 126 ~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~l~ 204 (513)
+++....+...+....|....+++..+ ...+...+.+..+..+..-..+..-..++.++..+....|.... ...++
T Consensus 64 l~~~~~~~l~~~~~~~~~~~~~~~~~i---~~~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~ 140 (815)
T KOG1820|consen 64 LLSFGLKCLDSKRVNIRDTKTQSLLRI---GKLEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFI 140 (815)
T ss_pred eccchhhhcccccccccCcchhHHHHH---HHhhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCcccccc
Confidence 455555555555555555555555555 11113455666677777767776666677777777766654322 12233
Q ss_pred HHHHHhhhccchhHHHHHHHHHHHhhccCChhhhh-------hhHHHH-------------------HHH---hcCCCCH
Q 010290 205 SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCV-------AHILPV-------------------IVN---FSQDKSW 255 (513)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~-------~~l~~~-------------------l~~---~~~d~~~ 255 (513)
|.+-.+. +..||..+...+..+....|..... ..++.- ... .-.+++|
T Consensus 141 ~~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 217 (815)
T KOG1820|consen 141 KHVGSLA---DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNV 217 (815)
T ss_pred ccCcccc---ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCCh
Confidence 3333333 4567777777777766554432100 000000 001 1112333
Q ss_pred HHHHHHHHHHHHHHHH-----------hCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhC---hHHHHHhhh
Q 010290 256 RVRYMVANQLYELCEA-----------VGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN---PELAIQHIL 321 (513)
Q Consensus 256 ~vr~~~~~~l~~l~~~-----------~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~~~~l~ 321 (513)
.-+...-......... +......+.+-+.+...+.++++.-|..|+..+...++.-+ ...+.+.+.
T Consensus 218 ~e~~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~ 297 (815)
T KOG1820|consen 218 KEQLEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLG 297 (815)
T ss_pred hhcccccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHH
Confidence 3222221111111100 00111234566777788889999999999999988877644 123334555
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHH--HHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHH
Q 010290 322 PCVKELSSDSSQHVRSALATVIMGMAPILGKDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399 (513)
Q Consensus 322 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~ 399 (513)
..+.....|.|..|-..++.++..++..++..+. ...++|.+++.+++....+|.++..++..++..... ..+.
T Consensus 298 ~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l----~~~~ 373 (815)
T KOG1820|consen 298 ILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL----SKMS 373 (815)
T ss_pred HHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH----HHHH
Confidence 6666677899999999999999999998887643 357889999999999999999999999998875443 6778
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhH
Q 010290 400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 472 (513)
Q Consensus 400 ~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~ 472 (513)
+.+...+.+++...|..+..++....+..++. .-...+.|.+....+|...+||.+|.++++.+.+.+|.+.+
T Consensus 374 ~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~ 450 (815)
T KOG1820|consen 374 EAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVF 450 (815)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence 88999999999999999999999998887732 22356899999999999999999999999999999998643
No 77
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.89 E-value=9.4e-06 Score=81.24 Aligned_cols=143 Identities=15% Similarity=0.090 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhh
Q 010290 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 240 (513)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 240 (513)
...+++-+.+.....+.++|+-+-..+..+++.-+.+ .-..++.+.+-++|+++.+|..|++.++.+- ......
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lLavNti~kDl~d~N~~iR~~AlR~ls~l~----~~el~~ 126 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALLAVNTIQKDLQDPNEEIRGFALRTLSLLR----VKELLG 126 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHHHHHHHHhhccCCCHHHHHHHHHHHHhcC----hHHHHH
Confidence 4556666666666778888888888888887765532 2345677778888999999999999887654 345566
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccc-hHHHHHHhcCCCcHHHHHHHHHhHHHHHhh
Q 010290 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD-VVPAYVRLLRDNEAEVRIAAAGKVTKICRI 310 (513)
Q Consensus 241 ~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~-ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 310 (513)
.+++.+.+.++|+++.||+.++-++.++-.. +.+.+.+. ....+..++.|++|.|..+|+.++..+...
T Consensus 127 ~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 NIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 7888899999999999999998888887543 33333344 667777788899999999998888887654
No 78
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=3.7e-05 Score=74.50 Aligned_cols=294 Identities=15% Similarity=0.138 Sum_probs=161.7
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhhccCCchHHHHHHHHHhhcccccccCchhhhhhhHH
Q 010290 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPP 90 (513)
Q Consensus 11 i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~ 90 (513)
+..+.+.|.|.|+..-.-|+..++.+...--.+.+..++ |-+.-..+..+-||+.+|-++-.+.+....-........-
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI-~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~r 191 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDI-PKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQR 191 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhh-HHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHH
Confidence 344556678888888888888887774322122222233 3333234556779999999888877754432233344555
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHh---hc--CCC-----------cchhhhHHhhhHhhcC
Q 010290 91 LETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRL---AA--GEW-----------FTARVSSCGLFHVAYP 154 (513)
Q Consensus 91 l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l---~~--d~~-----------~~~R~~~~~~l~~~~~ 154 (513)
+..+++|.+-.|-.++...+..+++..+++.- .-+.+.+..+ .. +.+ +=.....++++... .
T Consensus 192 iv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk-~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~-p 269 (938)
T KOG1077|consen 192 IVHLLDDQHMGVVTAATSLIEALVKKNPESYK-TCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY-P 269 (938)
T ss_pred HHHHhCccccceeeehHHHHHHHHHcCCHHHh-hhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC-C
Confidence 66777888888888888888888887765422 1122222222 11 110 00111122222222 2
Q ss_pred CCCHH----HHHHHHHHHHHHcCCC--chH-----HHHHHHHhHHHHHHHhhh-hhhHHHHHHHHHHhhhccchhHHHHH
Q 010290 155 SAPEA----LKTELRTIYRQLCQDD--MPM-----VRRSAATNLGKFAATVEA-AHLKSEIMSIFEELTQDDQDSVRLLA 222 (513)
Q Consensus 155 ~~~~~----~~~~l~~~l~~l~~d~--~~~-----vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~d~~~~vr~~a 222 (513)
...+. ...++++.++...+++ +.. ++.++.-..-.++-++++ +.........+-+++.+.+..+|..|
T Consensus 270 ~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLa 349 (938)
T KOG1077|consen 270 TPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLA 349 (938)
T ss_pred CCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhh
Confidence 21111 2333444444444422 112 222222222233333332 34455666777777888888888888
Q ss_pred HHHHHHhhccCChh-hhhhhHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHH
Q 010290 223 VEGCGALGKLLEPQ-DCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA 300 (513)
Q Consensus 223 ~~~l~~l~~~~~~~-~~~~~l~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a 300 (513)
++.+..++..-... ....+ ...+...++ +++-.+|+.++..|-.++..-. ...++.-+++.+...++.+|+..
T Consensus 350 LEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~N----ak~IV~elLqYL~tAd~sireei 424 (938)
T KOG1077|consen 350 LESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSN----AKQIVAELLQYLETADYSIREEI 424 (938)
T ss_pred HHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhh----HHHHHHHHHHHHhhcchHHHHHH
Confidence 88887777652222 22222 344444444 6777788888888777764321 24566777777777788888777
Q ss_pred HHhHHHHHhhhC
Q 010290 301 AGKVTKICRILN 312 (513)
Q Consensus 301 ~~~l~~~~~~~~ 312 (513)
+.-.+-+.+.+.
T Consensus 425 vlKvAILaEKyA 436 (938)
T KOG1077|consen 425 VLKVAILAEKYA 436 (938)
T ss_pred HHHHHHHHHHhc
Confidence 766666666543
No 79
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=6.8e-06 Score=80.87 Aligned_cols=454 Identities=12% Similarity=0.067 Sum_probs=239.5
Q ss_pred hhhhccCCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHh-hcCh---------HH
Q 010290 52 FLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGS-QMRE---------QD 121 (513)
Q Consensus 52 ~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~-~~~~---------~~ 121 (513)
++.+..+++|.+|+.+-++|..... ++.+...++.++.+- .-+..+|..|.-.+.+.++ ++.+ +.
T Consensus 10 ~l~qTl~pdps~rk~aEr~L~~~e~---q~~y~l~lL~Lv~~~--~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~ 84 (960)
T KOG1992|consen 10 YLLQTLSPDPSVRKPAERALRSLEG---QQNYPLLLLNLVANG--QQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEE 84 (960)
T ss_pred HHHhcCCCCCccCchHHHHHHHhcc---CCCchHHHHHHHhcc--CcChhHHHHHHHHHHHHHHhccCcCCCCccccchh
Confidence 3333445566666666666654322 122333333333211 1145566666666666665 2211 11
Q ss_pred HHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhh----
Q 010290 122 VVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA---- 197 (513)
Q Consensus 122 ~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---- 197 (513)
-.+.+-..|..+.-+....+...-...++.+.+.-=++-|+.+++-+.+-++..+-.+-.++...-..+.+.+.++
T Consensus 85 ~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSd 164 (960)
T KOG1992|consen 85 DREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSD 164 (960)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccH
Confidence 1223334444444444456666666777777766556678999999999998888777777777666666655432
Q ss_pred hhHH-----------HHHHHHHHh---h--hccchhHHHHHHHHHHHhhcc---CCh-------hhhhhhHHHHHHHhcC
Q 010290 198 HLKS-----------EIMSIFEEL---T--QDDQDSVRLLAVEGCGALGKL---LEP-------QDCVAHILPVIVNFSQ 251 (513)
Q Consensus 198 ~~~~-----------~l~~~l~~l---~--~d~~~~vr~~a~~~l~~l~~~---~~~-------~~~~~~l~~~l~~~~~ 251 (513)
..+. -+..++.+. + .+++...-..-...+--+++. +.- ++.....++.+.+++.
T Consensus 165 aL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~ 244 (960)
T KOG1992|consen 165 ALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLT 244 (960)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHh
Confidence 1221 122222221 1 111211111111111112222 111 2223345555555443
Q ss_pred -------CC--C----HHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCcH-----HHHHHHHHhHHHHHhhh
Q 010290 252 -------DK--S----WRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEA-----EVRIAAAGKVTKICRIL 311 (513)
Q Consensus 252 -------d~--~----~~vr~~~~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~d~~~-----~vr~~a~~~l~~~~~~~ 311 (513)
++ + ..+|..+|+.+.-.+....+++ +.++++.....++.+..+ .....|++.|..+++.-
T Consensus 245 ~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~ 324 (960)
T KOG1992|consen 245 YDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRP 324 (960)
T ss_pred ccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhh
Confidence 11 1 2467788887777776655443 234455555556654432 34456666666666532
Q ss_pred C------hHHHHH-----------------------hhhhhhhhhcCCCcH-HHHHHHHHHHHHhchhhCHHHH---HHh
Q 010290 312 N------PELAIQ-----------------------HILPCVKELSSDSSQ-HVRSALATVIMGMAPILGKDAT---IEQ 358 (513)
Q Consensus 312 ~------~~~~~~-----------------------~l~~~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~~~~~---~~~ 358 (513)
. .+.+.. .-+.++..-++..+. .-|++++..+..+++.+..... ..+
T Consensus 325 ~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~ 404 (960)
T KOG1992|consen 325 HYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSE 404 (960)
T ss_pred hhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 1 111111 122233333333333 3477889999999988854322 233
Q ss_pred HHHHHHHhcCCC--ChHHHHHHHHHHHHhhhhh-----h----------hhhhhhhHHHHHHHhhcCCChhHHHHHHHHH
Q 010290 359 LLPIFLSLLKDE--FPDVRLNIISKLDQVNQVI-----G----------IDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 421 (513)
Q Consensus 359 l~~~l~~~l~d~--~~~vr~~a~~~l~~i~~~~-----~----------~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l 421 (513)
+-..+.++.+++ ++.-+..++.....+.... | .+.+...+.|.|..--....+-+|..+++.+
T Consensus 405 v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~ 484 (960)
T KOG1992|consen 405 VQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYI 484 (960)
T ss_pred HHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhccccee
Confidence 334444444443 3444444544444443221 1 1223445555554433345677888888888
Q ss_pred HHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh--------hhHhhhhHHHHHhhh---c-----
Q 010290 422 PLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--------DWAMQHIVPQVALIK---S----- 485 (513)
Q Consensus 422 ~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~--------~~~~~~i~~~L~~~~---~----- 485 (513)
..+-.++++++... .+|.+..++..+...|-.-|+.++.++...-++ +.....+.+.+..+. +
T Consensus 485 ~~FR~ql~~~~lm~-~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~ 563 (960)
T KOG1992|consen 485 YTFRNQLGKEHLMA-LLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKA 563 (960)
T ss_pred eeecccCChHHHHH-HHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCccc
Confidence 88877888877664 889999999999999999999999998764433 222222333333333 2
Q ss_pred CcchHHHHHHHHHHHhcccceeehhc
Q 010290 486 SRNLVLNSVLSLLKNAGIDAVFYMET 511 (513)
Q Consensus 486 ~~~~~~r~~~~~~~~i~~~~~~~~~~ 511 (513)
+++|+-+.+.+++.-.--+..|++|+
T Consensus 564 EneylmKaImRii~i~~~~i~p~~~~ 589 (960)
T KOG1992|consen 564 ENEYLMKAIMRIISILQSAIIPHAPE 589 (960)
T ss_pred ccHHHHHHHHHHHHhCHHhhhhhhhH
Confidence 22688887777776555445566653
No 80
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=2.6e-05 Score=76.11 Aligned_cols=387 Identities=14% Similarity=0.161 Sum_probs=216.1
Q ss_pred cCCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcCh-HHHHhhHHHH---HHH
Q 010290 57 NDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-QDVVEHFIPL---VKR 132 (513)
Q Consensus 57 ~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-~~~~~~~~~~---l~~ 132 (513)
..++.+++..+-+.+-.+. +.|+.+...++.++...+-..+..++..-. ...+++.+... .+....++=. +.+
T Consensus 30 ek~~~~~KIeamK~ii~~m--lnGe~~p~Llm~IiRfvlps~~~elKKLly-~ywE~vPKt~~dgkl~~EMILvcna~Rk 106 (948)
T KOG1058|consen 30 EKGDDEVKIEAMKKIIALM--LNGEDLPSLLMTIIRFVLPSRNHELKKLLY-YYWELVPKTDSDGKLLHEMILVCNAYRK 106 (948)
T ss_pred hcCChHHHHHHHHHHHHHH--HcCCCchHHHHHHhheeeccCchHHHHHHH-HHHHHccccCCCcccHHHHHHHHHHHhh
Confidence 3455555655554443221 234555555566665555555666655433 33333333322 2222222222 222
Q ss_pred hhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHH-hh
Q 010290 133 LAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEE-LT 211 (513)
Q Consensus 133 l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-l~ 211 (513)
=.+.++..+|-...+.+ ++.-.++....+.|.+.+.+++.++.||+.|.-++..+-+... ...+..-.++.. +.
T Consensus 107 DLQHPNEyiRG~TLRFL---ckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~--~L~pDapeLi~~fL~ 181 (948)
T KOG1058|consen 107 DLQHPNEYIRGSTLRFL---CKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE--HLIPDAPELIESFLL 181 (948)
T ss_pred hccCchHhhcchhhhhh---hhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh--hhcCChHHHHHHHHH
Confidence 34456777776666543 3444556778899999999999999999999998888776521 111111111222 33
Q ss_pred hccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHh
Q 010290 212 QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFS---QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRL 288 (513)
Q Consensus 212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~---~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~ 288 (513)
.+.++..+..|.-.|...- ++ ..+..+.... .+-+.......++.+-..+..-+ ......+..+..+
T Consensus 182 ~e~DpsCkRNAFi~L~~~D----~E----rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p--~~~~~~i~~i~~l 251 (948)
T KOG1058|consen 182 TEQDPSCKRNAFLMLFTTD----PE----RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANP--AEKARYIRCIYNL 251 (948)
T ss_pred hccCchhHHHHHHHHHhcC----HH----HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCH--HHhhHHHHHHHHH
Confidence 4566666776665554322 21 1222222222 12223344455555555543211 1134678888888
Q ss_pred cCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhc-CCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhc
Q 010290 289 LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS-SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 367 (513)
Q Consensus 289 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 367 (513)
|..+++.|+-.|+.++..+.. .+..+... -..+..++ ..++-+++.-...-+..+.. +.+...+.+.--++..|
T Consensus 252 L~stssaV~fEaa~tlv~lS~--~p~alk~A-a~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~il~~l~mDvLrvL 326 (948)
T KOG1058|consen 252 LSSTSSAVIFEAAGTLVTLSN--DPTALKAA-ASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEKILQGLIMDVLRVL 326 (948)
T ss_pred HhcCCchhhhhhcceEEEccC--CHHHHHHH-HHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHHHHHHHHHHHHHHc
Confidence 888888998888877776654 22222111 12222222 23444555555555555552 22223344455567889
Q ss_pred CCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhh---cCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHH
Q 010290 368 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA---EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW 444 (513)
Q Consensus 368 ~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~---~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~ 444 (513)
..++.+||..++...-.++..-..+.+...+...+..-- .+.+-..|+..++.+...+-.+.. ....++|.++.+
T Consensus 327 ss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~ll~f 404 (948)
T KOG1058|consen 327 SSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLLLDF 404 (948)
T ss_pred CcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHHHHH
Confidence 999999999988876666554333333223333333221 244567899999999888776544 245699999999
Q ss_pred hcCchhHHHHHHHHHHHHHHHHhC
Q 010290 445 LKDKVYSIRDAAANNVKRLAEEFG 468 (513)
Q Consensus 445 l~d~~~~VR~~a~~~l~~l~~~~~ 468 (513)
+.|.++.--...+..+....+.+.
T Consensus 405 isD~N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 405 ISDSNEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred hccCCHHHHHHHHHHHHHHHHhCc
Confidence 999998766666666666666554
No 81
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.83 E-value=1.1e-05 Score=78.28 Aligned_cols=334 Identities=13% Similarity=0.085 Sum_probs=203.1
Q ss_pred HHHHHHhcCccH---HHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-cc-----CCchHHHHHHHHHhhcccccccCch
Q 010290 12 AVLIDELKNDDI---QLRLNSIRRLSTIARALGEERTRKELIPFLSE-NN-----DDDDEVLLAMAEELGVFIPYVGGLE 82 (513)
Q Consensus 12 ~~l~~~l~~~d~---~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~-----~~~~~vr~~~~~~l~~~~~~~~~~~ 82 (513)
+.++..|.+.+. ......+.++..++ ......+.+++.+.+ +. ..+.+.-..+...+..+........
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls---~~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~ 78 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALS---TSPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK 78 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHH---CChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence 345666665554 34444555555554 344556666666665 21 1244555555555554443222111
Q ss_pred -------hhh-hhhHHHHHhh-----ccc--hhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhc---------CCC
Q 010290 83 -------YAN-VLLPPLETLC-----TVE--ETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAA---------GEW 138 (513)
Q Consensus 83 -------~~~-~l~~~l~~l~-----~~~--~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~---------d~~ 138 (513)
+.+ .+.|.+..+. .+. ++.+=..+...+..+...++.+...+.+-....-+.. +.+
T Consensus 79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~ 158 (415)
T PF12460_consen 79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSS 158 (415)
T ss_pred ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCcccc
Confidence 122 2555544332 122 2556666777788888888876655543333322220 111
Q ss_pred --cchhhhHHhhhHhhcCCCCHH----HHHHHHHHHHHHcC-CCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhh
Q 010290 139 --FTARVSSCGLFHVAYPSAPEA----LKTELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELT 211 (513)
Q Consensus 139 --~~~R~~~~~~l~~~~~~~~~~----~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~ 211 (513)
+........++..+...+.++ ...++++.+.++.. ..++..|..+++.+..+++.++.+.....++..+....
T Consensus 159 ~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~ 238 (415)
T PF12460_consen 159 TISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSI 238 (415)
T ss_pred ccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhh
Confidence 111222223333333333333 34456666666544 44589999999999999988755554555555555444
Q ss_pred -hccchhHHHHHHHHHHHhhccC--ChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--------------
Q 010290 212 -QDDQDSVRLLAVEGCGALGKLL--EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-------------- 274 (513)
Q Consensus 212 -~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-------------- 274 (513)
.......|..+++.+.-+.+.+ ........++..+..++.| +.+...++++++.+....++
T Consensus 239 ~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLy 316 (415)
T PF12460_consen 239 SSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLY 316 (415)
T ss_pred cccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHH
Confidence 4555667777777765555432 1223345577778888877 55788889999888754211
Q ss_pred -CccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHH---HHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhh
Q 010290 275 -EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL---AIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL 350 (513)
Q Consensus 275 -~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 350 (513)
+.+...++|.+++..++.+.+.|...+.+|..+.+.++.+- ..+.++|.+.+.+.-++..++.+++.++..+...-
T Consensus 317 kQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 317 KQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 01124578888888888888899999999999999988763 34678999999998899999999999998887654
No 82
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=0.00015 Score=70.54 Aligned_cols=295 Identities=13% Similarity=0.183 Sum_probs=159.2
Q ss_pred hhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhh--ccchhHHHHHHHHHHHHHHhhcChHHHHhh
Q 010290 49 LIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLC--TVEETCVRDKAVESLCRIGSQMREQDVVEH 125 (513)
Q Consensus 49 l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~--~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~ 125 (513)
++..+++ +.+.++....-|..+++.+ |+.+....+.+-+..++ .+..+.||+.|+-|+-.+.+..++-.-...
T Consensus 112 vin~iknDL~srn~~fv~LAL~~I~ni----G~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~ 187 (938)
T KOG1077|consen 112 VINSIKNDLSSRNPTFVCLALHCIANI----GSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGE 187 (938)
T ss_pred HHHHHHhhhhcCCcHHHHHHHHHHHhh----ccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhh
Confidence 3344444 4555666666666666654 44444444544444444 345677888888888888777443222223
Q ss_pred HHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHc-------CC---------CchHHHHHHHHhHHH
Q 010290 126 FIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLC-------QD---------DMPMVRRSAATNLGK 189 (513)
Q Consensus 126 ~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~-------~d---------~~~~vr~~a~~~l~~ 189 (513)
-...+..+.+|++-.+-.++..++..+++..++++..-+...+..+. .| |.|-....+++.|..
T Consensus 188 W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~ 267 (938)
T KOG1077|consen 188 WAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQI 267 (938)
T ss_pred HHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHh
Confidence 34556677778777777788888888888887775544333332221 01 233344334444333
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhhccc----------hhHHHHHHHHHHHhhccCChh-hhhhhHHHHHHHhcCCCCHHHH
Q 010290 190 FAATVEAAHLKSEIMSIFEELTQDDQ----------DSVRLLAVEGCGALGKLLEPQ-DCVAHILPVIVNFSQDKSWRVR 258 (513)
Q Consensus 190 l~~~~~~~~~~~~l~~~l~~l~~d~~----------~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~~~d~~~~vr 258 (513)
+ ....+......+...+.++++-.+ ..++.+.+.-...++-+++++ .....-...+-+++.+....+|
T Consensus 268 ~-p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiR 346 (938)
T KOG1077|consen 268 Y-PTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIR 346 (938)
T ss_pred C-CCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccch
Confidence 3 111111122233333333332111 112222222222333333332 2233344555667777778888
Q ss_pred HHHHHHHHHHHHHhCCCccccchHHHHHHhcC-CCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHH
Q 010290 259 YMVANQLYELCEAVGPEPTRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRS 337 (513)
Q Consensus 259 ~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~ 337 (513)
.-+.+.+..++..-........-...+...++ +.|.+||+.|+..|-.+|..-....+.++++ +.+...++.+|+
T Consensus 347 YLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elL----qYL~tAd~sire 422 (938)
T KOG1077|consen 347 YLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELL----QYLETADYSIRE 422 (938)
T ss_pred hhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHH----HHHhhcchHHHH
Confidence 88877777776541111111223556666676 8899999999999999987654444444444 444556777777
Q ss_pred HHHHHHHHhchhhCH
Q 010290 338 ALATVIMGMAPILGK 352 (513)
Q Consensus 338 ~~~~~l~~l~~~~~~ 352 (513)
..+--+.-+++.+..
T Consensus 423 eivlKvAILaEKyAt 437 (938)
T KOG1077|consen 423 EIVLKVAILAEKYAT 437 (938)
T ss_pred HHHHHHHHHHHHhcC
Confidence 766666666655443
No 83
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.81 E-value=0.00011 Score=77.49 Aligned_cols=396 Identities=13% Similarity=0.092 Sum_probs=217.1
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHH
Q 010290 90 PLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYR 169 (513)
Q Consensus 90 ~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~ 169 (513)
.+...+..+...+|..|++|+..++..-+.=-....+...+.+-..|.+..||.+|..++|..+-..+ +...+....+.
T Consensus 820 ~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~-e~~~qyY~~i~ 898 (1692)
T KOG1020|consen 820 LILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP-ELIFQYYDQII 898 (1692)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH-HHHHHHHHHHH
Confidence 33445567788899999999999988633211122234455566778999999999999996654433 33445566667
Q ss_pred HHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhcc-CChhhhhh---hHHHH
Q 010290 170 QLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL-LEPQDCVA---HILPV 245 (513)
Q Consensus 170 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~-~~~~~~~~---~l~~~ 245 (513)
+...|+...||+.+.+.+..++...+.=.....+.--+..-.+|++..|+..+.+.+..+.-. .+...... .-++.
T Consensus 899 erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~ 978 (1692)
T KOG1020|consen 899 ERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISL 978 (1692)
T ss_pred hhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHH
Confidence 778899999999999999999987654222223333334446788888999998888765532 22111000 01111
Q ss_pred HH-------HhcCCCCHHHHHHHHHHHHHHHHHhCCCcc----ccchHHHHHHh------------cCCCcHHHHH-HHH
Q 010290 246 IV-------NFSQDKSWRVRYMVANQLYELCEAVGPEPT----RSDVVPAYVRL------------LRDNEAEVRI-AAA 301 (513)
Q Consensus 246 l~-------~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~----~~~ll~~l~~~------------l~d~~~~vr~-~a~ 301 (513)
.. .+..+..+..-...++.=.......+.+.. .+..+..+..+ ..+.+.++|. +.+
T Consensus 979 ~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~l 1058 (1692)
T KOG1020|consen 979 EVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYL 1058 (1692)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHH
Confidence 11 111222211111111100000000000000 01111211111 1223334444 444
Q ss_pred HhHHHHHhhhC---hHHHHHhhhhhhhhhcCC-CcHHHHHHHHHHHHHhchhhCH--HHHHHhHHHHHHHhcCCCChHHH
Q 010290 302 GKVTKICRILN---PELAIQHILPCVKELSSD-SSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPDVR 375 (513)
Q Consensus 302 ~~l~~~~~~~~---~~~~~~~l~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr 375 (513)
..|..+++.-+ ...+...+.|++..-+.. ...++-..++..+..+.+.... +.+...+-..+.+.+--..-.+-
T Consensus 1059 stL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V 1138 (1692)
T KOG1020|consen 1059 STLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATV 1138 (1692)
T ss_pred HHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHH
Confidence 55666665421 113345566777544322 3346666777777666554432 22334444555555544445555
Q ss_pred HHHHHHHHHhhhhh--hhhhhhhhHHHHHHHhh---cC---CC-----hhHHHHHHHHHHHHHHHh--------Chh---
Q 010290 376 LNIISKLDQVNQVI--GIDLLSQSLLPAIVELA---ED---RH-----WRVRLAIIEYIPLLASQL--------GVG--- 431 (513)
Q Consensus 376 ~~a~~~l~~i~~~~--~~~~~~~~l~~~l~~l~---~~---~~-----~~vR~~~~~~l~~l~~~~--------~~~--- 431 (513)
..|+.|++.++... |.... ..+...+...+ ++ .+ ...-...+.++|.+++.+ |+.
T Consensus 1139 ~~~vsCl~sl~~k~~~~~~~v-~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~ 1217 (1692)
T KOG1020|consen 1139 VEAVSCLGSLATKRTDGAKVV-KACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQ 1217 (1692)
T ss_pred HHHHHHHHHHHhhhccchHHH-HHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchh
Confidence 66778888887753 22221 23333332222 11 22 222334566677777642 111
Q ss_pred ---hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhhcCc
Q 010290 432 ---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKSSR 487 (513)
Q Consensus 432 ---~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~~~ 487 (513)
...++++..+.-+..+...++|..|+.++|.++-....-+....+...+...+++.
T Consensus 1218 ~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~ 1276 (1692)
T KOG1020|consen 1218 EGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADD 1276 (1692)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhh
Confidence 34566777777788899999999999999999988766555566666666666654
No 84
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.79 E-value=3.6e-07 Score=92.73 Aligned_cols=199 Identities=18% Similarity=0.224 Sum_probs=161.3
Q ss_pred CChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC--CCc-cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHh
Q 010290 233 LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEP-TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR 309 (513)
Q Consensus 233 ~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~~-~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~ 309 (513)
+++.+..+.+-+.+...+.++.|.-|..+++.+......-+ ... +...+...+-..+.|.+..|-..|+..+..++.
T Consensus 245 l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~ 324 (815)
T KOG1820|consen 245 LPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAK 324 (815)
T ss_pred CchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 34456677788888889999999999999999888887655 111 223455555666789999999999999999998
Q ss_pred hhChH--HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q 010290 310 ILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (513)
Q Consensus 310 ~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~ 387 (513)
.++.. .+...+.|.+...+.+....+|.++..++..++...+ ...+.+.+..++++.++.+|..+...+.....
T Consensus 325 ~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~ 400 (815)
T KOG1820|consen 325 KLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLR 400 (815)
T ss_pred hcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Confidence 87654 4556778888888899999999999999988886333 45678899999999999999999999999888
Q ss_pred hhhhh----hhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHH
Q 010290 388 VIGID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD 435 (513)
Q Consensus 388 ~~~~~----~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~ 435 (513)
..+.. .-.+.+.|.+....+|.+..||.++.++++.+.+.+|.+.+..
T Consensus 401 ~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k 452 (815)
T KOG1820|consen 401 KLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKK 452 (815)
T ss_pred hcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 77621 2236889999999999999999999999999999988875543
No 85
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.7e-05 Score=77.20 Aligned_cols=279 Identities=17% Similarity=0.113 Sum_probs=180.3
Q ss_pred hHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHH
Q 010290 144 SSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAV 223 (513)
Q Consensus 144 ~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~ 223 (513)
.+...++.+-.+.+....+.+.+.+.. ..++.||..+|-.+|-.+-.- ....+...+.+.+..++.-.-++|.
T Consensus 398 GalyAlGLIhA~hG~~~~~yL~~~Lk~---~~~e~v~hG~cLGlGLa~mGS----a~~eiYe~lKevLy~D~AvsGEAAg 470 (929)
T KOG2062|consen 398 GALYALGLIHANHGRGITDYLLQQLKT---AENEVVRHGACLGLGLAGMGS----ANEEIYEKLKEVLYNDSAVSGEAAG 470 (929)
T ss_pred chhhhhhccccCcCccHHHHHHHHHHh---ccchhhhhhhhhhccchhccc----ccHHHHHHHHHHHhccchhhhhHHH
Confidence 455666666666666544444444332 237889999998888655322 2345666667677655555555555
Q ss_pred HHHHHhhccCChhhhhhhHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHH
Q 010290 224 EGCGALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAG 302 (513)
Q Consensus 224 ~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~ 302 (513)
-+++-+.-.... ...+.-+.....+ ...++.+...-.+.-+. +|.+ +..=|.+.+++.|.+|-+|.....
T Consensus 471 i~MGl~mlGt~~----~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~--ygrq---e~Ad~lI~el~~dkdpilR~~Gm~ 541 (929)
T KOG2062|consen 471 IAMGLLMLGTAN----QEAIEDMLTYAQETQHEKIIRGLAVGIALVV--YGRQ---EDADPLIKELLRDKDPILRYGGMY 541 (929)
T ss_pred HhhhhHhhCcCc----HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHH--hhhh---hhhHHHHHHHhcCCchhhhhhhHH
Confidence 555554433222 2344444444444 34556666654444443 3332 345678888999999999998887
Q ss_pred hHHHHHhhhChHHHHHhhhhhhhhh-cCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcC-CCChHHHHHHHH
Q 010290 303 KVTKICRILNPELAIQHILPCVKEL-SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-DEFPDVRLNIIS 380 (513)
Q Consensus 303 ~l~~~~~~~~~~~~~~~l~~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~ 380 (513)
+++.-....|..... ..+... .+|.+..||++++.+++-++-. .+...|....+|. +.++.||..++-
T Consensus 542 t~alAy~GTgnnkai----r~lLh~aVsD~nDDVrRaAVialGFVl~~------dp~~~~s~V~lLses~N~HVRyGaA~ 611 (929)
T KOG2062|consen 542 TLALAYVGTGNNKAI----RRLLHVAVSDVNDDVRRAAVIALGFVLFR------DPEQLPSTVSLLSESYNPHVRYGAAM 611 (929)
T ss_pred HHHHHHhccCchhhH----HHhhcccccccchHHHHHHHHHheeeEec------ChhhchHHHHHHhhhcChhhhhhHHH
Confidence 776654444443333 333333 5899999999999999887621 1223455555554 558999999999
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhH--HHHHHHHHHHHhcCchhHH
Q 010290 381 KLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLKDKVYSI 452 (513)
Q Consensus 381 ~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~--~~~~~~~l~~~l~d~~~~V 452 (513)
+||-.|..-|. ...+..+..+.+|+..-||++|+-+++.+.-+..+... ...+...+.+.+.|++..+
T Consensus 612 ALGIaCAGtG~----~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 612 ALGIACAGTGL----KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred HHhhhhcCCCc----HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHH
Confidence 99999887675 45677788888999999999999999988776544321 2345666677777776544
No 86
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.78 E-value=1.1e-05 Score=74.67 Aligned_cols=451 Identities=13% Similarity=0.079 Sum_probs=255.6
Q ss_pred hcCccHHHHHHHhhcHHHHHHHhChHh---hhhhhhh--------hhhh--ccCCchHHHHHHHHHhhcccccc------
Q 010290 18 LKNDDIQLRLNSIRRLSTIARALGEER---TRKELIP--------FLSE--NNDDDDEVLLAMAEELGVFIPYV------ 78 (513)
Q Consensus 18 l~~~d~~~r~~a~~~l~~i~~~~~~~~---~~~~l~~--------~l~~--~~~~~~~vr~~~~~~l~~~~~~~------ 78 (513)
+.+...++|..|+-.+....+.+.... +|.-++| .+.- ++|+++..|.-+.+.+..+....
T Consensus 5 ~r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~ 84 (728)
T KOG4535|consen 5 MRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSV 84 (728)
T ss_pred hhhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHH
Confidence 456677899999888877766553322 3333443 3333 57889999988887776554321
Q ss_pred ----cCchhh-------hhhhH---H-HHHhhccchhHHHHHHHHHHHHHHhhcChHHHHh----hHHHHHHHhhcCCCc
Q 010290 79 ----GGLEYA-------NVLLP---P-LETLCTVEETCVRDKAVESLCRIGSQMREQDVVE----HFIPLVKRLAAGEWF 139 (513)
Q Consensus 79 ----~~~~~~-------~~l~~---~-l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~----~~~~~l~~l~~d~~~ 139 (513)
|...+. ..+.. + +..+.....+.+-...++|+..+...-+-+..+- .+...++.+.+.+++
T Consensus 85 a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~ 164 (728)
T KOG4535|consen 85 AEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDV 164 (728)
T ss_pred HhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 111111 11111 1 1223345566666777888888887766544332 244556677888999
Q ss_pred chhhhHHhhhHhhcCCC-------------------------CHHHHHHHH--HHHH-----------------------
Q 010290 140 TARVSSCGLFHVAYPSA-------------------------PEALKTELR--TIYR----------------------- 169 (513)
Q Consensus 140 ~~R~~~~~~l~~~~~~~-------------------------~~~~~~~l~--~~l~----------------------- 169 (513)
.+|.++..+++.++..- +.+.++++- +...
T Consensus 165 ~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i 244 (728)
T KOG4535|consen 165 NVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISI 244 (728)
T ss_pred ChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeee
Confidence 99999998887665321 001111110 0000
Q ss_pred ---------------HHcCC--CchHHHHHHHHhHHHHHHHhhhh-hhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhc
Q 010290 170 ---------------QLCQD--DMPMVRRSAATNLGKFAATVEAA-HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGK 231 (513)
Q Consensus 170 ---------------~l~~d--~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~ 231 (513)
..+.. .-..+|-.+.+.|..++.++|-- .+.-++...+...+.+..+.+...+..++..++.
T Consensus 245 ~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~ 324 (728)
T KOG4535|consen 245 VVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGT 324 (728)
T ss_pred eecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHH
Confidence 00000 01247788888888888877642 2333455555556778888999999888887776
Q ss_pred cCCh----hhhhhhHHHH-HH---------H-hcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCC-c
Q 010290 232 LLEP----QDCVAHILPV-IV---------N-FSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDN-E 293 (513)
Q Consensus 232 ~~~~----~~~~~~l~~~-l~---------~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~d~-~ 293 (513)
.++. +.....+... +- . ......+....+.+.++.+|...-.... -.....+.++..++|. +
T Consensus 325 ~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~ 404 (728)
T KOG4535|consen 325 GLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKN 404 (728)
T ss_pred HHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHH
Confidence 5442 1111111111 11 1 1112233456667777777754321111 1235667776666654 4
Q ss_pred HHHHHHHHHhHHHHHhhhChH---HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCH-----HHHH----HhHHH
Q 010290 294 AEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK-----DATI----EQLLP 361 (513)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-----~~~~----~~l~~ 361 (513)
.-||.+|+++++.+.-+-+.. .+.......+...+.|+...+|..++.+++.+...+-. +.+. ..++.
T Consensus 405 ~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~ 484 (728)
T KOG4535|consen 405 RLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLL 484 (728)
T ss_pred HHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHH
Confidence 557888888877654332211 12222334445556788889999999998888654321 1111 11222
Q ss_pred HHHHhc---CCCChHHHHHHHHHHHHhhhhhhh-hh--h----hhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHH----
Q 010290 362 IFLSLL---KDEFPDVRLNIISKLDQVNQVIGI-DL--L----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ---- 427 (513)
Q Consensus 362 ~l~~~l---~d~~~~vr~~a~~~l~~i~~~~~~-~~--~----~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~---- 427 (513)
.+...- .-....||.+++++|+++...+.. +. + .......+....-..+..||..+|.+++.+.++
T Consensus 485 ~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~ 564 (728)
T KOG4535|consen 485 KMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALP 564 (728)
T ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccc
Confidence 222111 112357999999999998776542 11 1 011111111122234678999999999999876
Q ss_pred hChhhHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHHhC
Q 010290 428 LGVGFFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFG 468 (513)
Q Consensus 428 ~~~~~~~~~~~~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~ 468 (513)
+........+.+.+..++.| .+..||..|+.++..-....|
T Consensus 565 lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~ 606 (728)
T KOG4535|consen 565 LQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQ 606 (728)
T ss_pred ccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCccc
Confidence 22233456788888887765 688999999999877665444
No 87
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1e-05 Score=79.88 Aligned_cols=184 Identities=16% Similarity=0.162 Sum_probs=138.0
Q ss_pred HHHHHHHhcCc-cHHHHHHHhhcHHHHHHHhChHh-----hhhhhhhhhhh-ccC-CchHHHHHHHHHhhcccccccCch
Q 010290 11 IAVLIDELKND-DIQLRLNSIRRLSTIARALGEER-----TRKELIPFLSE-NND-DDDEVLLAMAEELGVFIPYVGGLE 82 (513)
Q Consensus 11 i~~l~~~l~~~-d~~~r~~a~~~l~~i~~~~~~~~-----~~~~l~~~l~~-~~~-~~~~vr~~~~~~l~~~~~~~~~~~ 82 (513)
+..+++.|+.+ |+..+.+|+..+++.... |.+. -.+.++|.+.. +++ .+.++...|+++|..++..++...
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~m-gnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSM-GNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhh-cchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 67889999987 999999999999888543 3433 24567888888 554 479999999999999998776432
Q ss_pred ---hhhhhhHHH-HHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCH
Q 010290 83 ---YANVLLPPL-ETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE 158 (513)
Q Consensus 83 ---~~~~l~~~l-~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~ 158 (513)
.....+|+| ..|+..+.-+|-+.++.++..+.+.-+......--+..+..+..-=+..+...|..+.+++++.+..
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~s 327 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRS 327 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 223456765 6688888899999999999999988776655443222222222222345566777777888888877
Q ss_pred H---HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhh
Q 010290 159 A---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE 195 (513)
Q Consensus 159 ~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 195 (513)
+ +.-+.+|.+..+++..+..+-+.++-++..++..+.
T Consensus 328 d~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 328 DEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred ccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 6 778889999999999988888889999998887664
No 88
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.69 E-value=2.6e-07 Score=68.13 Aligned_cols=87 Identities=18% Similarity=0.086 Sum_probs=66.6
Q ss_pred hhhhHHhhhHhhcCCCCHH---HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhh--HHHHHHHHHHhhhccc
Q 010290 141 ARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHL--KSEIMSIFEELTQDDQ 215 (513)
Q Consensus 141 ~R~~~~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~l~~d~~ 215 (513)
.|.++...++.++..++.. +.+.+++.++..+.|++++||..+|++|..+++..+.+.. .+.+++.+.++..|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3666666666665555554 7788899999999999999999999999999988776443 4678888888889999
Q ss_pred hhHHHHHHHHHHH
Q 010290 216 DSVRLLAVEGCGA 228 (513)
Q Consensus 216 ~~vr~~a~~~l~~ 228 (513)
+.||.+| +.|..
T Consensus 82 ~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 82 ENVRSAA-ELLDR 93 (97)
T ss_pred hhHHHHH-HHHHH
Confidence 9988876 44443
No 89
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=98.68 E-value=1.5e-06 Score=84.78 Aligned_cols=231 Identities=15% Similarity=0.163 Sum_probs=150.7
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcC-CCc
Q 010290 254 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSS-DSS 332 (513)
Q Consensus 254 ~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-d~~ 332 (513)
++.-+....+.|..+...++......+++|.+...+.+.. +.-...-.+-.+.+......+...++|.|...++ ...
T Consensus 286 dn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~--~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~ 363 (700)
T KOG2137|consen 286 DNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTK--MVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDP 363 (700)
T ss_pred CcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcccc--ccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCc
Confidence 3344556677777777777776666777777777664332 1111122223333334444556667777766655 445
Q ss_pred HHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhh-cCCCh
Q 010290 333 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHW 411 (513)
Q Consensus 333 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~-~~~~~ 411 (513)
.+++...++-...+.+....+.+.++++|++...++|.+..++..++..+..+.+.++...+.+.++|.+..+. +..+.
T Consensus 364 ~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~ 443 (700)
T KOG2137|consen 364 KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNL 443 (700)
T ss_pred ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccch
Confidence 56777777777778888888888888888888888888888888888888888888887777888888887764 34567
Q ss_pred hHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh-C-hhhHhhhhHHHHHhhhcCc
Q 010290 412 RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF-G-PDWAMQHIVPQVALIKSSR 487 (513)
Q Consensus 412 ~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~-~-~~~~~~~i~~~L~~~~~~~ 487 (513)
.+|..++.+++.+++.+......+.+.|++ +...-+++.+...-......+.-.. + .+...+.++|.+..+...+
T Consensus 444 ~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~-~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 444 YVKVNVLPCLAGLIQRLDKAAVLDELLPIL-KCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 788888888888887776665555455444 4444444555444444444433322 2 2445577777777665554
No 90
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=0.00027 Score=70.04 Aligned_cols=418 Identities=16% Similarity=0.143 Sum_probs=219.1
Q ss_pred CCCcHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhhccCCchHHHHHHHHHhhccccc-----ccC-
Q 010290 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY-----VGG- 80 (513)
Q Consensus 7 ~~~~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~-----~~~- 80 (513)
+++.+...+..=-++|+.+|+.|-++|..... ...+--.++..+.+ ..-++.+|.+++..+.++++. .+.
T Consensus 3 ~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~---q~~y~l~lL~Lv~~-~~~d~~~r~aaav~fKN~iKr~W~~~~~~~ 78 (960)
T KOG1992|consen 3 NLETLANYLLQTLSPDPSVRKPAERALRSLEG---QQNYPLLLLNLVAN-GQQDPQIRVAAAVYFKNYIKRNWIPAEDSP 78 (960)
T ss_pred cHHHHHHHHHhcCCCCCccCchHHHHHHHhcc---CCCchHHHHHHHhc-cCcChhHHHHHHHHHHHHHHhccCcCCCCc
Confidence 44555555554457889999999988876632 12223345555544 112788999999999887762 111
Q ss_pred ----chhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCC
Q 010290 81 ----LEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSA 156 (513)
Q Consensus 81 ----~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~ 156 (513)
+...+.+...+..+.-+....+...--+++.-+++.--+ +-+..++|.+..-.+..+..+-.+.......+.+.+
T Consensus 79 ~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP-~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~ 157 (960)
T KOG1992|consen 79 IKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFP-DKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRY 157 (960)
T ss_pred cccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc
Confidence 112334444454444455566777777777777755222 235566776665444444433333333333344333
Q ss_pred -----CHHHHHHH---HH--------HHH---HHc--CCCchHHHHHHHHhHHHHHHHhhh----------hhhHHHHHH
Q 010290 157 -----PEALKTEL---RT--------IYR---QLC--QDDMPMVRRSAATNLGKFAATVEA----------AHLKSEIMS 205 (513)
Q Consensus 157 -----~~~~~~~l---~~--------~l~---~l~--~d~~~~vr~~a~~~l~~l~~~~~~----------~~~~~~l~~ 205 (513)
+++.+.++ +. .|. .++ .+.+...-+.....+--+++.+.. |...+.-++
T Consensus 158 R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~ 237 (960)
T KOG1992|consen 158 RPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMG 237 (960)
T ss_pred CcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHH
Confidence 22222222 11 111 122 122222222233333333333221 222344556
Q ss_pred HHHHhhh--------cc-c----hhHHHHHHHHHHHhhccCChh--hhhhhHHHHHHHhcCCCCHHHH-----HHHHHHH
Q 010290 206 IFEELTQ--------DD-Q----DSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVR-----YMVANQL 265 (513)
Q Consensus 206 ~l~~l~~--------d~-~----~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr-----~~~~~~l 265 (513)
.+.+++. |+ + +.+|...++...-.+..+.++ .+.++++...-.++.+.++..| ..+.+.|
T Consensus 238 ~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FL 317 (960)
T KOG1992|consen 238 AFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFL 317 (960)
T ss_pred HHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 6665554 11 1 235555555555555444432 1222222222233333222222 2223333
Q ss_pred HHHHHHhCC-----------------------------CccccchHHHHHHhcCCCcHHH-HHHHHHhHHHHHhhhChH-
Q 010290 266 YELCEAVGP-----------------------------EPTRSDVVPAYVRLLRDNEAEV-RIAAAGKVTKICRILNPE- 314 (513)
Q Consensus 266 ~~l~~~~~~-----------------------------~~~~~~ll~~l~~~l~d~~~~v-r~~a~~~l~~~~~~~~~~- 314 (513)
..++..-.. +.+.+.-+..+.+-++-+|.+. |++|+..+..+++.+...
T Consensus 318 t~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~v 397 (960)
T KOG1992|consen 318 TSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQV 397 (960)
T ss_pred HHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchh
Confidence 333322110 0111223444444444444333 678888888998877432
Q ss_pred --HHHHhhhhhhhhhcCC--CcHHHHHHHHHHHHHhchhhC---------------HHHHHHhHHHHHHHhcCCCChHHH
Q 010290 315 --LAIQHILPCVKELSSD--SSQHVRSALATVIMGMAPILG---------------KDATIEQLLPIFLSLLKDEFPDVR 375 (513)
Q Consensus 315 --~~~~~l~~~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~---------------~~~~~~~l~~~l~~~l~d~~~~vr 375 (513)
-+...+-..+.++..+ .+|.-+..++..+.+++...+ .+++...+.|.+..-=..+.+.++
T Consensus 398 t~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilk 477 (960)
T KOG1992|consen 398 TGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILK 477 (960)
T ss_pred HHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchh
Confidence 2222333333444444 479989988888888875422 123334455544332224568888
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhCh
Q 010290 376 LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 430 (513)
Q Consensus 376 ~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~ 430 (513)
..+++.+-.+-..+|++.+ -.++|.+...++.++.-+..-|+.++..+....++
T Consensus 478 a~aIKy~~~FR~ql~~~~l-m~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 478 ADAIKYIYTFRNQLGKEHL-MALLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN 531 (960)
T ss_pred hcccceeeeecccCChHHH-HHHHHHHHHhccCcchHHHHHHHHHHHhccccccC
Confidence 8888888777777787765 67889999999999999999999999888655433
No 91
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=98.67 E-value=2.2e-06 Score=83.57 Aligned_cols=233 Identities=17% Similarity=0.288 Sum_probs=177.2
Q ss_pred CchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcC-CC
Q 010290 175 DMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ-DK 253 (513)
Q Consensus 175 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~-d~ 253 (513)
.++.-+....+.|..+...++.......++|.+...+.+. ..--..+-.+..+++..+...+...++|.+....+ ..
T Consensus 285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~ 362 (700)
T KOG2137|consen 285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASD 362 (700)
T ss_pred cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccc--cccccccchhhhhhhccchhhhhhhhhHHHHHHhccCC
Confidence 4556677778888888888888778888999888777443 22233444555666666667777888888888877 44
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhc-CCCc
Q 010290 254 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS-SDSS 332 (513)
Q Consensus 254 ~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~-~d~~ 332 (513)
...++...++-+.-|.+....+.+.+.++|.+...++|.+..++..+++.++.+.+.++-..+.+.++|.+..+. ...+
T Consensus 363 ~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~ 442 (700)
T KOG2137|consen 363 PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN 442 (700)
T ss_pred cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence 566777788888888888888888899999999999999999999999999999999988888899999997764 5678
Q ss_pred HHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhh--hhhhhhhhhhHHHHHHHhhcCCC
Q 010290 333 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ--VIGIDLLSQSLLPAIVELAEDRH 410 (513)
Q Consensus 333 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~--~~~~~~~~~~l~~~l~~l~~~~~ 410 (513)
..++..++.+++.+++.+......+.++|++.+ .+-.++.+..........+.- ..|.+.+.+.++|.+..+...+.
T Consensus 443 ~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~-~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 443 LYVKVNVLPCLAGLIQRLDKAAVLDELLPILKC-IKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 899999999999999888877777777776544 445556666655555444432 22345566889999888876553
No 92
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.67 E-value=3.8e-07 Score=67.25 Aligned_cols=89 Identities=17% Similarity=0.201 Sum_probs=70.0
Q ss_pred HHHHHHHhHHHHHhhhChH--HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHH--HhHHHHHHHhcCCCC
Q 010290 296 VRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI--EQLLPIFLSLLKDEF 371 (513)
Q Consensus 296 vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~ 371 (513)
.|.+++-+|..++..++.. .+.+.++|.+...++|++|+||..+++++..+++..+.+... +.+++.+.+++.|.+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3677777787777766554 566788888889999999999999999999999887766542 567888888999999
Q ss_pred hHHHHHHHHHHHHh
Q 010290 372 PDVRLNIISKLDQV 385 (513)
Q Consensus 372 ~~vr~~a~~~l~~i 385 (513)
+.||.+| +.|.++
T Consensus 82 ~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 82 ENVRSAA-ELLDRL 94 (97)
T ss_pred hhHHHHH-HHHHHH
Confidence 9999877 445444
No 93
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.65 E-value=5.9e-06 Score=70.59 Aligned_cols=220 Identities=20% Similarity=0.232 Sum_probs=122.4
Q ss_pred HHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhcc--chhHHHHHHHHHHHhhccCChhhhhhhHH
Q 010290 166 TIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD--QDSVRLLAVEGCGALGKLLEPQDCVAHIL 243 (513)
Q Consensus 166 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 243 (513)
..+.+...|.+...+...+-+|++... ..-+|.+...+.|+ .+-||..|.++++++. .+.+.
T Consensus 39 ~~i~ka~~d~s~llkhe~ay~LgQ~~~--------~~Av~~l~~vl~desq~pmvRhEAaealga~~--------~~~~~ 102 (289)
T KOG0567|consen 39 KAITKAFIDDSALLKHELAYVLGQMQD--------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--------DPESL 102 (289)
T ss_pred HHHHHhcccchhhhccchhhhhhhhcc--------chhhHHHHHHhcccccchHHHHHHHHHHHhhc--------chhhH
Confidence 334444444455555555666665543 23455555566554 4567778888887766 23466
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc------c------cc---chHHHHHH-hcCCCcHHH-HHHHHHhHHH
Q 010290 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP------T------RS---DVVPAYVR-LLRDNEAEV-RIAAAGKVTK 306 (513)
Q Consensus 244 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~------~------~~---~ll~~l~~-~l~d~~~~v-r~~a~~~l~~ 306 (513)
+.+.+..+|+...||.++..++.++--.-+... + .+ .-+.-+-. +++.+.+.. |..|.-.|..
T Consensus 103 ~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn 182 (289)
T KOG0567|consen 103 EILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRN 182 (289)
T ss_pred HHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhc
Confidence 677777777777777776666666542211100 0 00 00111111 111111211 2222222221
Q ss_pred HHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCC--CChHHHHHHHHHHHH
Q 010290 307 ICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQ 384 (513)
Q Consensus 307 ~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~ 384 (513)
.|.+.. +..+...+.+.+.-.|..++.++|++-. +.-+|.+.+.|.| +++.||..|+.+||.
T Consensus 183 ----~g~Eea----I~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALGa 246 (289)
T KOG0567|consen 183 ----IGTEEA----INALIDGLADDSALFRHEVAFVFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALGA 246 (289)
T ss_pred ----cCcHHH----HHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHHh
Confidence 122221 2333344466677888888888877752 2335666666655 457788888888887
Q ss_pred hhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 010290 385 VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (513)
Q Consensus 385 i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~ 425 (513)
|+. +..++.|.+.++|+..-+|..+.-++...-
T Consensus 247 Ia~--------e~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 247 IAD--------EDCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred hcC--------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 765 567778888888888888887777776553
No 94
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.64 E-value=0.00011 Score=74.26 Aligned_cols=361 Identities=16% Similarity=0.154 Sum_probs=202.1
Q ss_pred HHHHHHHHHHhhcCh--HHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH---HHHHHHHHHHHHcCCCchHH
Q 010290 105 KAVESLCRIGSQMRE--QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQDDMPMV 179 (513)
Q Consensus 105 ~a~~~l~~l~~~~~~--~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~v 179 (513)
.+...|.+++..... .-....+++.+..+.+.++......+..++..+.-..... ....+++.+.+++..++..+
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l 347 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDL 347 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHH
Confidence 455566666655432 2223446777777777777777777777777665443222 45668889999999888888
Q ss_pred HHHHHHhHHHHHHHh--hhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhh--hhhhHHHHHHHh-cCCCC
Q 010290 180 RRSAATNLGKFAATV--EAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD--CVAHILPVIVNF-SQDKS 254 (513)
Q Consensus 180 r~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~-~~d~~ 254 (513)
+..+.+.|..++..- ........++|.+..++.|+ ..+..++..+..++..=.... .....+|.+.+. +..++
T Consensus 348 ~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~ 425 (708)
T PF05804_consen 348 VNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSE 425 (708)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCC
Confidence 988888888877432 22334445778888888865 355667777766664211110 112245555553 33445
Q ss_pred HHHHHHHHHHHHHHHHHhCCC--ccccchHHHHH-HhcCCCcHHHHHHHHHhHHHHHhhhChH--HHHHhhhhhhhhhcC
Q 010290 255 WRVRYMVANQLYELCEAVGPE--PTRSDVVPAYV-RLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSS 329 (513)
Q Consensus 255 ~~vr~~~~~~l~~l~~~~~~~--~~~~~ll~~l~-~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~ 329 (513)
..+...++..+.+++..-... .....-++.++ ..++..++- .++.+..++.+-|+. .+.+.+.+.+.....
T Consensus 426 ~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~ 501 (708)
T PF05804_consen 426 EEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFVDFIGDLAKIVSS 501 (708)
T ss_pred ccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhc
Confidence 555555544444443211100 00012233333 233333322 123333444332221 222222222222223
Q ss_pred CCcHHHHHHHHHHHHHhch-hhCHHHHH--HhHHHHHHHhcCCC--ChHHHHHHHHHHHHhhhhhhhh--hhhhhHHHHH
Q 010290 330 DSSQHVRSALATVIMGMAP-ILGKDATI--EQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGID--LLSQSLLPAI 402 (513)
Q Consensus 330 d~~~~vr~~~~~~l~~l~~-~~~~~~~~--~~l~~~l~~~l~d~--~~~vr~~a~~~l~~i~~~~~~~--~~~~~l~~~l 402 (513)
..++.....++.+++.+.- ..+..... ..++|.+.+.|..+ ...+...++-.+|.++..-..- .....+++.+
T Consensus 502 ~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~L 581 (708)
T PF05804_consen 502 GDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTL 581 (708)
T ss_pred CCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHH
Confidence 3455555555555555531 12222222 36899999998754 3467777778888776532111 1235678888
Q ss_pred HHhhcCC--ChhHHHHHHHHHHHHHHHhCh-hhH--HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhH
Q 010290 403 VELAEDR--HWRVRLAIIEYIPLLASQLGV-GFF--DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 472 (513)
Q Consensus 403 ~~l~~~~--~~~vR~~~~~~l~~l~~~~~~-~~~--~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~ 472 (513)
.+++++. +...-...+.++..+..+-.. +.+ ..++..+++.+++|++++||..+-.++.-+.+. .++|.
T Consensus 582 i~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~-d~~w~ 655 (708)
T PF05804_consen 582 IELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY-DEEWA 655 (708)
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-CHHHH
Confidence 8887654 455555666666666654221 111 135788999999999999999999999977764 55554
No 95
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.63 E-value=5.7e-06 Score=69.85 Aligned_cols=111 Identities=21% Similarity=0.206 Sum_probs=85.2
Q ss_pred chhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcH
Q 010290 215 QDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEA 294 (513)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~ 294 (513)
++.+|..++.+++.++..++. ..+..+|.+...+.|+++.||..++..+..+... +--.....++..+..++.|+++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCH
Confidence 467899999999988888764 4566788888999999999999999988888753 2222245666788888999999
Q ss_pred HHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhc
Q 010290 295 EVRIAAAGKVTKICRILNPELAIQHILPCVKELS 328 (513)
Q Consensus 295 ~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 328 (513)
+||..|...+..+....++..+.+.+.+.+..+-
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNIIYNNFPELISSLN 111 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 9999999999999887656666565555555544
No 96
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.60 E-value=3.6e-07 Score=67.46 Aligned_cols=85 Identities=28% Similarity=0.390 Sum_probs=49.2
Q ss_pred HHHHHhc-CCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHH
Q 010290 361 PIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 439 (513)
Q Consensus 361 ~~l~~~l-~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~ 439 (513)
|.+.+.+ +|+++.||..++.+|+.+.. +..+|.+..+++|+++.+|..++.+++.+. .+..++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------~~~~~~ 65 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD--------PEAIPALIELLKDEDPMVRRAAARALGRIG--------DPEAIP 65 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------HHHTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CHHHHH
Confidence 4455555 66666666666666664422 345666666666666666666666666553 123555
Q ss_pred HHHHHhcC-chhHHHHHHHHHHH
Q 010290 440 LCMQWLKD-KVYSIRDAAANNVK 461 (513)
Q Consensus 440 ~l~~~l~d-~~~~VR~~a~~~l~ 461 (513)
.+.+++.| ++..||..|+.+||
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhcC
Confidence 66665544 34455666666654
No 97
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.60 E-value=5.6e-06 Score=69.88 Aligned_cols=102 Identities=18% Similarity=0.201 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChh
Q 010290 333 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 412 (513)
Q Consensus 333 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~ 412 (513)
+.+|..++.+++.++..++. ..+...|.+...|+|+++.||..|+.++..+... |.-.+...++..+...+.|+++.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHH
Confidence 45555555555555544432 2344555555666666666666666655555432 22222234444444555666666
Q ss_pred HHHHHHHHHHHHHHHhChhhHHHHH
Q 010290 413 VRLAIIEYIPLLASQLGVGFFDDKL 437 (513)
Q Consensus 413 vR~~~~~~l~~l~~~~~~~~~~~~~ 437 (513)
+|..|..++..+....++..+...+
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~i~~~~ 103 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNIIYNNF 103 (178)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHH
Confidence 6666666666555554444444433
No 98
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.59 E-value=0.00051 Score=69.66 Aligned_cols=345 Identities=14% Similarity=0.097 Sum_probs=201.6
Q ss_pred hHHhhhHhhcCCCCHH---HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHh--hhhhhHHHHHHHHHHhhhccchhH
Q 010290 144 SSCGLFHVAYPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATV--EAAHLKSEIMSIFEELTQDDQDSV 218 (513)
Q Consensus 144 ~~~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~l~~d~~~~v 218 (513)
.++.++.++++....+ ....+++.+.++++..+.++...+...|..++-.- ........++|.+.+++..++..+
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l 347 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDL 347 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHH
Confidence 5566777777776555 55778999999999999999988888888876332 123344568888888998888899
Q ss_pred HHHHHHHHHHhhccCCh--hhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC--CCccccchHHHHHHhc-CCCc
Q 010290 219 RLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRSDVVPAYVRLL-RDNE 293 (513)
Q Consensus 219 r~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~~~~~~ll~~l~~~l-~d~~ 293 (513)
+..++..|.+++..-.- .-....++|.+..++.+++ .+..++..|.+++..-. ..+...+.+|.+++++ ..++
T Consensus 348 ~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~ 425 (708)
T PF05804_consen 348 VNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSE 425 (708)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCC
Confidence 99999999988854221 2223347899999998765 44556667777654211 1122345677777754 3345
Q ss_pred HHHHHHHHHhHHHHHhhhCh-HHH-HHhhhhhhhhh-cCCCcHHHHHHHHHHHHHhchhhCHH--HHHHhHHHHHHHhcC
Q 010290 294 AEVRIAAAGKVTKICRILNP-ELA-IQHILPCVKEL-SSDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLK 368 (513)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~-~~~-~~~l~~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~ 368 (513)
+.+...++..+-.++..-.. +.+ ...-++.+... ++..+ ...+..+..++.+-|.. .+.+.+.|. ...+.
T Consensus 426 ~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D----~lLlKlIRNiS~h~~~~k~~f~~~i~~L-~~~v~ 500 (708)
T PF05804_consen 426 EEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD----PLLLKLIRNISQHDGPLKELFVDFIGDL-AKIVS 500 (708)
T ss_pred ccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc----HHHHHHHHHHHhcCchHHHHHHHHHHHH-HHHhh
Confidence 55555444434333321100 000 11222333222 22222 22345666666654321 222333333 33343
Q ss_pred C-CChHHHHHHHHHHHHhh-hhhhhhhhh--hhHHHHHHHhhcCC--ChhHHHHHHHHHHHHHHHhChh--hHHHHHHHH
Q 010290 369 D-EFPDVRLNIISKLDQVN-QVIGIDLLS--QSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVG--FFDDKLGAL 440 (513)
Q Consensus 369 d-~~~~vr~~a~~~l~~i~-~~~~~~~~~--~~l~~~l~~l~~~~--~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~ 440 (513)
. ++++....++.+|+++. ...+...+. ..++|.+...+..+ ...+...++.++|.++..-... .....+++.
T Consensus 501 ~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~ 580 (708)
T PF05804_consen 501 SGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPT 580 (708)
T ss_pred cCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHH
Confidence 3 34555555555555443 122222222 37889999988755 3457777778888776532111 123356777
Q ss_pred HHHHhcCc--hhHHHHHHHHHHHHHHHHhChh-hH--hhhhHHHHHhhhcCcchHHHHHH
Q 010290 441 CMQWLKDK--VYSIRDAAANNVKRLAEEFGPD-WA--MQHIVPQVALIKSSRNLVLNSVL 495 (513)
Q Consensus 441 l~~~l~d~--~~~VR~~a~~~l~~l~~~~~~~-~~--~~~i~~~L~~~~~~~~~~~r~~~ 495 (513)
+..+++.. +.+.-...+.++.++...-... .. ...+...|.+++.|+|...|...
T Consensus 581 Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~ 640 (708)
T PF05804_consen 581 LIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVC 640 (708)
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHH
Confidence 77777543 3455566677777777652221 11 15678889999999988777443
No 99
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.59 E-value=5.3e-07 Score=66.52 Aligned_cols=85 Identities=28% Similarity=0.414 Sum_probs=65.1
Q ss_pred hhhhhhc-CCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHH
Q 010290 322 PCVKELS-SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 400 (513)
Q Consensus 322 ~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~ 400 (513)
|.+.+.+ +|+++.+|..++.+++.+. .+...|.+..+++|+++.||..++.+|+.+.. +..++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~~ 65 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG--------DPEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAIP 65 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHH
Confidence 4555555 8899999999999988553 33568888888899999999999999998742 56777
Q ss_pred HHHHhhcCC-ChhHHHHHHHHHH
Q 010290 401 AIVELAEDR-HWRVRLAIIEYIP 422 (513)
Q Consensus 401 ~l~~l~~~~-~~~vR~~~~~~l~ 422 (513)
.+.+++.++ ++.+|..++.+++
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhcC
Confidence 888877654 5667888888774
No 100
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=0.00027 Score=66.11 Aligned_cols=253 Identities=15% Similarity=0.127 Sum_probs=151.1
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhh--hhhhHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhCCCccc
Q 010290 202 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD--CVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTR 278 (513)
Q Consensus 202 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 278 (513)
.++-.+..-..|++..+|..|+.+|+..+...+.+. ..+.++..+.. +..+.+..|...++.+|..+..........
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~ 337 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE 337 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence 344445555679999999999999999999877643 23345555554 445557889888988888887765544333
Q ss_pred cchHH---HHHHhcCCCcHHHHHHHHHhHHHHHhhhChH---HHHH----hhhhhhhhhcCCCcHHHHHHHHHHHHHhch
Q 010290 279 SDVVP---AYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQ----HILPCVKELSSDSSQHVRSALATVIMGMAP 348 (513)
Q Consensus 279 ~~ll~---~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~----~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 348 (513)
..+++ .+.++.+|.++++|.+|+..++.+....|.. .+.+ .+.|.+.. ++|+++.+-.+.-..+....+
T Consensus 338 ~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllh-l~d~~p~va~ACr~~~~~c~p 416 (533)
T KOG2032|consen 338 SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLH-LQDPNPYVARACRSELRTCYP 416 (533)
T ss_pred hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceee-eCCCChHHHHHHHHHHHhcCc
Confidence 33333 4455778999999999999999999876543 2222 33333333 378999886655444444444
Q ss_pred hhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHH---hhcCCCh-hHHHHHHHHHHHH
Q 010290 349 ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE---LAEDRHW-RVRLAIIEYIPLL 424 (513)
Q Consensus 349 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~---l~~~~~~-~vR~~~~~~l~~l 424 (513)
.++-+... ..+-+.+ |.+.. |..++.. ..+..+. ...+.+...+.. .+-+.+| .+|.++...-+.+
T Consensus 417 ~l~rke~~----~~~q~~l-d~~~~-~~q~Fyn--~~c~~L~--~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~ 486 (533)
T KOG2032|consen 417 NLVRKELY----HLFQESL-DTDMA-RFQAFYN--QWCIQLN--HIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRS 486 (533)
T ss_pred hhHHHHHH----HHHhhhh-HHhHH-HHHHHHH--HHHHHHh--hhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHH
Confidence 33332221 2222222 32221 3222221 1111110 011222222221 1224467 7888888777777
Q ss_pred HHHhChhh----HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 010290 425 ASQLGVGF----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 465 (513)
Q Consensus 425 ~~~~~~~~----~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~ 465 (513)
..+..+.. ...++...+-.+..|+-++|+..|.++++.+..
T Consensus 487 vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 487 VDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 66654432 234566666678899999999999999987754
No 101
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.57 E-value=0.00034 Score=68.22 Aligned_cols=220 Identities=18% Similarity=0.182 Sum_probs=152.0
Q ss_pred HHHHHHHHHhhcCh----HHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcC---CCCHHHHHHHHHHHHHHcCCCchH
Q 010290 106 AVESLCRIGSQMRE----QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYP---SAPEALKTELRTIYRQLCQDDMPM 178 (513)
Q Consensus 106 a~~~l~~l~~~~~~----~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~---~~~~~~~~~l~~~l~~l~~d~~~~ 178 (513)
.++-+..+...+++ +++...++..+.+-.+.++-.+|..++.+++.+.. ..++...+.+...+...+.|..|.
T Consensus 62 Il~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~ 141 (892)
T KOG2025|consen 62 ILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPN 141 (892)
T ss_pred HHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCch
Confidence 34455555555543 34445566666667778889999999999998876 345558888999999999999999
Q ss_pred HHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHh-hhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHH
Q 010290 179 VRRSAATNLGKFAATVEAAHLKSEIMSIFEEL-TQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRV 257 (513)
Q Consensus 179 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~v 257 (513)
||.+|+.+|..+-..-+.+.. .+...+..+ -+|++++||.+++.++.. .+.-+|++.....|-+..+
T Consensus 142 VRiqAv~aLsrlQ~d~~dee~--~v~n~l~~liqnDpS~EVRRaaLsnI~v----------dnsTlp~IveRarDV~~an 209 (892)
T KOG2025|consen 142 VRIQAVLALSRLQGDPKDEEC--PVVNLLKDLIQNDPSDEVRRAALSNISV----------DNSTLPCIVERARDVSGAN 209 (892)
T ss_pred HHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHHhcCCcHHHHHHHHHhhcc----------CcccchhHHHHhhhhhHHH
Confidence 999999999988743222211 233344444 368999999999988763 3446888999999988888
Q ss_pred HHHHHH-HHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHH-HHhhhChHHHHHhhhhhhhhhcCCCcHHH
Q 010290 258 RYMVAN-QLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTK-ICRILNPELAIQHILPCVKELSSDSSQHV 335 (513)
Q Consensus 258 r~~~~~-~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~-~~~~~~~~~~~~~l~~~l~~~~~d~~~~v 335 (513)
|+.+-+ .+..+ . +.... .++-...+...+.|.+..|+.++..++.. +....+ ..++..+..+--+.+..|
T Consensus 210 RrlvY~r~lpki-d-~r~ls-i~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~d-----gni~ElL~~ldvsnss~v 281 (892)
T KOG2025|consen 210 RRLVYERCLPKI-D-LRSLS-IDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSD-----GNILELLERLDVSNSSEV 281 (892)
T ss_pred HHHHHHHhhhhh-h-hhhhh-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhcc-----ccHHHHHHHhccccchHH
Confidence 776643 44555 1 11111 23556667778899999999999988765 444322 244555555555566688
Q ss_pred HHHHHHHHHH
Q 010290 336 RSALATVIMG 345 (513)
Q Consensus 336 r~~~~~~l~~ 345 (513)
+..++.++-.
T Consensus 282 avk~lealf~ 291 (892)
T KOG2025|consen 282 AVKALEALFS 291 (892)
T ss_pred HHHHHHHHHH
Confidence 8888887655
No 102
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=98.56 E-value=0.00024 Score=71.42 Aligned_cols=146 Identities=18% Similarity=0.233 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcC-CCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCCh
Q 010290 333 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW 411 (513)
Q Consensus 333 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~ 411 (513)
+.+|...+-+++.+|- ..+.....++|.+.+-|. .+...+|.+.+-+++.+|..+.. +.+..+|.+..-+.|++.
T Consensus 945 ~~vra~~vvTlakmcL--ah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa--m~d~YiP~I~~~L~Dp~~ 1020 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCL--AHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA--MTDRYIPMIAASLCDPSV 1020 (1529)
T ss_pred hHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH--HHHHhhHHHHHHhcCchH
Confidence 4567777777777763 344455678899888764 45678999998889888875432 346778999988999999
Q ss_pred hHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhh
Q 010290 412 RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALI 483 (513)
Q Consensus 412 ~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~ 483 (513)
-+|..++..++.+.+. +--.+...++=-++..+-|.++.||.-|--.++.+...-.+.++...++..+..+
T Consensus 1021 iVRrqt~ilL~rLLq~-~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~~l 1091 (1529)
T KOG0413|consen 1021 IVRRQTIILLARLLQF-GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYIIAL 1091 (1529)
T ss_pred HHHHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHH
Confidence 9999999999888754 1000111122222334558899999999999999998878877777777776554
No 103
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.56 E-value=0.00097 Score=64.74 Aligned_cols=451 Identities=12% Similarity=0.032 Sum_probs=238.3
Q ss_pred HHHHhcCccHHHHHHHhhcHHHHHHHhChHh---h---hhhhhhhhhhccCCchHHHHHHHHHhhcccccccC---chhh
Q 010290 14 LIDELKNDDIQLRLNSIRRLSTIARALGEER---T---RKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGG---LEYA 84 (513)
Q Consensus 14 l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~---~---~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~---~~~~ 84 (513)
++..+.+.|+..-..|+.-....+....+.+ + ..+.+-++.+..++.++.....+..++.+...... +-..
T Consensus 14 ~l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~ 93 (678)
T KOG1293|consen 14 LLYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLR 93 (678)
T ss_pred HHHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHH
Confidence 4455667777665555433333322222111 1 11222222334567777777777788765542221 1122
Q ss_pred hhhhHHHHHhhccch-hHHHHHHHHHHHHHHhhcChH-----HHHhhHHHHHHHhhc-CCCcchhhhHHhhhHhhcCCCC
Q 010290 85 NVLLPPLETLCTVEE-TCVRDKAVESLCRIGSQMREQ-----DVVEHFIPLVKRLAA-GEWFTARVSSCGLFHVAYPSAP 157 (513)
Q Consensus 85 ~~l~~~l~~l~~~~~-~~vR~~a~~~l~~l~~~~~~~-----~~~~~~~~~l~~l~~-d~~~~~R~~~~~~l~~~~~~~~ 157 (513)
...++-+.+++.+.+ ..++....+++..+...-+.. .....+++.+.-+.. ......++.+. .++.....-.
T Consensus 94 ~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~-~~a~~s~~~~ 172 (678)
T KOG1293|consen 94 IIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVS-RAAHLSSTKD 172 (678)
T ss_pred HhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhh-hhccccccch
Confidence 334555666777776 889999999999987754321 112234444433333 22222232222 2222222111
Q ss_pred HH---HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHh-----hhhhh-----HHHHHH--HHHHhhhccchhHHHHH
Q 010290 158 EA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATV-----EAAHL-----KSEIMS--IFEELTQDDQDSVRLLA 222 (513)
Q Consensus 158 ~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~-----~~~~~-----~~~l~~--~l~~l~~d~~~~vr~~a 222 (513)
.. .-..+.+.+.-+...-+..+|.++..++..-...+ +.-.+ ...+.+ ...++..|++...|-.+
T Consensus 173 hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~s 252 (678)
T KOG1293|consen 173 HQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRS 252 (678)
T ss_pred hhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHH
Confidence 11 22333444444444456788888888888322211 00011 112233 34567788888888888
Q ss_pred HHHHHHhhccCChh-h---------hhh-h-HHHHHHHhcCCCCHHHHHHHHHH---HHHHHHHhCCCccccchHHHHHH
Q 010290 223 VEGCGALGKLLEPQ-D---------CVA-H-ILPVIVNFSQDKSWRVRYMVANQ---LYELCEAVGPEPTRSDVVPAYVR 287 (513)
Q Consensus 223 ~~~l~~l~~~~~~~-~---------~~~-~-l~~~l~~~~~d~~~~vr~~~~~~---l~~l~~~~~~~~~~~~ll~~l~~ 287 (513)
+.++..+...-... . ..+ . +.-....+..|+-|..-...+.. +..+........+.....+...+
T Consensus 253 l~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~e 332 (678)
T KOG1293|consen 253 LECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTE 332 (678)
T ss_pred HHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHH
Confidence 88887766542111 0 000 1 11112234455554322222211 12222222111111222222222
Q ss_pred h------cCCCcHHHHHHHHHhHHH---HHhhhChHHHHHhhhhhh-----hhhcCCCcHHHHHHHHHHHHHhchhhC--
Q 010290 288 L------LRDNEAEVRIAAAGKVTK---ICRILNPELAIQHILPCV-----KELSSDSSQHVRSALATVIMGMAPILG-- 351 (513)
Q Consensus 288 ~------l~d~~~~vr~~a~~~l~~---~~~~~~~~~~~~~l~~~l-----~~~~~d~~~~vr~~~~~~l~~l~~~~~-- 351 (513)
+ ++...+..|.-++...-- ++...+. ...+.+.... ....-..+..++.+++.++..++....
T Consensus 333 llf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i-~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL 411 (678)
T KOG1293|consen 333 LLFICASLAASDEKYRLILLNETLILNHLEYGLEI-SLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSAL 411 (678)
T ss_pred HHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcch-hHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 2 233445555544432211 1111111 1111121111 112234567889999988877764332
Q ss_pred -HHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhh---hhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 010290 352 -KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (513)
Q Consensus 352 -~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~ 427 (513)
...-..++...+.+++.|++..|...+..++..++-.+++- .+....+..+..++.+++..+|..+++++-.+.-.
T Consensus 412 ~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~ 491 (678)
T KOG1293|consen 412 RTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFN 491 (678)
T ss_pred HcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhc
Confidence 12223456666788889999999999999999997766643 34567888899999999999999999999888766
Q ss_pred hChhh----HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 010290 428 LGVGF----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (513)
Q Consensus 428 ~~~~~----~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~ 466 (513)
..... +.+.....+..+.+|+++.|++..+..+..+.-.
T Consensus 492 ~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 492 CDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred chHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 54432 2334456677789999999999999999887653
No 104
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.56 E-value=3.4e-05 Score=66.09 Aligned_cols=221 Identities=16% Similarity=0.173 Sum_probs=138.5
Q ss_pred HHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhCCCccccchH
Q 010290 205 SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGPEPTRSDVV 282 (513)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~~~~~~~ll 282 (513)
..+.+...|++...+.....+++.+. ....+|.+...+.|. .+.||..++++|+.+. .+..+
T Consensus 39 ~~i~ka~~d~s~llkhe~ay~LgQ~~--------~~~Av~~l~~vl~desq~pmvRhEAaealga~~--------~~~~~ 102 (289)
T KOG0567|consen 39 KAITKAFIDDSALLKHELAYVLGQMQ--------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--------DPESL 102 (289)
T ss_pred HHHHHhcccchhhhccchhhhhhhhc--------cchhhHHHHHHhcccccchHHHHHHHHHHHhhc--------chhhH
Confidence 33344455555556666677777655 345678888877664 6889999999999986 35678
Q ss_pred HHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHH---------------------HHHHHHH
Q 010290 283 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQH---------------------VRSALAT 341 (513)
Q Consensus 283 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~---------------------vr~~~~~ 341 (513)
+++.+..+|+...||..+..++.++-..-+.... ....|+.. .||.+. -|..+..
T Consensus 103 ~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~-~~~~p~~S---vdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF 178 (289)
T KOG0567|consen 103 EILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI-ANSSPYIS---VDPAPPANLSSVHELRAELLDETKPLFERYRAMF 178 (289)
T ss_pred HHHHHHhcCCccccchHHHHHHHHHHHhhccccc-cccCcccc---CCCCCccccccHHHHHHHHHhcchhHHHHHhhhh
Confidence 8888888999999999877777776432111100 01112111 222222 1222222
Q ss_pred HHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcC--CChhHHHHHHH
Q 010290 342 VIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIE 419 (513)
Q Consensus 342 ~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~--~~~~vR~~~~~ 419 (513)
.+..+. . +.-+..+.+.+.++..-.|..++-+||.+-. +.-+|.+.+.+.| .+.-||..|++
T Consensus 179 ~LRn~g----~----EeaI~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAe 242 (289)
T KOG0567|consen 179 YLRNIG----T----EEAINALIDGLADDSALFRHEVAFVFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAE 242 (289)
T ss_pred HhhccC----c----HHHHHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHH
Confidence 222211 1 2234556677777777888888888887754 4556666666554 35778888888
Q ss_pred HHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh
Q 010290 420 YIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP 469 (513)
Q Consensus 420 ~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~ 469 (513)
+++.++. +..++.+.+.++|+++-||+...-++.-+-...|+
T Consensus 243 ALGaIa~--------e~~~~vL~e~~~D~~~vv~esc~valdm~eyens~ 284 (289)
T KOG0567|consen 243 ALGAIAD--------EDCVEVLKEYLGDEERVVRESCEVALDMLEYENSK 284 (289)
T ss_pred HHHhhcC--------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhccc
Confidence 8888763 34677888888888888888877777655443333
No 105
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.53 E-value=7.9e-05 Score=69.16 Aligned_cols=405 Identities=13% Similarity=0.107 Sum_probs=216.8
Q ss_pred chhHHHHHHHHHHHHHHhhcChHHHHhh---HHH--------HHH-HhhcCCCcchhhhHHhhhHhhcCC----------
Q 010290 98 EETCVRDKAVESLCRIGSQMREQDVVEH---FIP--------LVK-RLAAGEWFTARVSSCGLFHVAYPS---------- 155 (513)
Q Consensus 98 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~---~~~--------~l~-~l~~d~~~~~R~~~~~~l~~~~~~---------- 155 (513)
.+..||..|+.++....+.++...+..+ ++| .+. --.+|+++..|..+.+..+.+...
T Consensus 8 ~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~ 87 (728)
T KOG4535|consen 8 YQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAED 87 (728)
T ss_pred HHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 3456777777777777666655433222 221 111 124566677776666655544321
Q ss_pred CCHH--------HH---HHHHHHHH-HHcCCCchHHHHHHHHhHHHHHHHhhhhh----hHHHHHHHHHHhhhccchhHH
Q 010290 156 APEA--------LK---TELRTIYR-QLCQDDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQDDQDSVR 219 (513)
Q Consensus 156 ~~~~--------~~---~~l~~~l~-~l~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~d~~~~vr 219 (513)
.++. .. -++...++ .+....++.+-.++.++|..+....+-+. +...++..++.++.+.++.||
T Consensus 88 ~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~ 167 (728)
T KOG4535|consen 88 TSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVR 167 (728)
T ss_pred cCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChh
Confidence 1111 11 11222222 23345566777778888887776554322 233455556667788888888
Q ss_pred HHHHHHHHHhhccCC--hh----------------------hhhhh------------------------------HHHH
Q 010290 220 LLAVEGCGALGKLLE--PQ----------------------DCVAH------------------------------ILPV 245 (513)
Q Consensus 220 ~~a~~~l~~l~~~~~--~~----------------------~~~~~------------------------------l~~~ 245 (513)
..++-.++.+...-. ++ +...+ +.|.
T Consensus 168 vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~ 247 (728)
T KOG4535|consen 168 VSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVL 247 (728)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeec
Confidence 888777776653210 00 00000 0000
Q ss_pred H----------HHhcCC--CCHHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhC
Q 010290 246 I----------VNFSQD--KSWRVRYMVANQLYELCEAVGPE-PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN 312 (513)
Q Consensus 246 l----------~~~~~d--~~~~vr~~~~~~l~~l~~~~~~~-~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 312 (513)
+ ...++. ....+|..+.+.+..++..+|-- .+..++.-.+...+.+.++.+...+...+..++...+
T Consensus 248 ~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv 327 (728)
T KOG4535|consen 248 PKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLI 327 (728)
T ss_pred CCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHh
Confidence 0 001111 11237777777777777766531 2223555666667778888888777777776665443
Q ss_pred hH----H---------H-------------------------------------------HHhhhhhhhhhcCC-CcHHH
Q 010290 313 PE----L---------A-------------------------------------------IQHILPCVKELSSD-SSQHV 335 (513)
Q Consensus 313 ~~----~---------~-------------------------------------------~~~l~~~l~~~~~d-~~~~v 335 (513)
.+ . + .+...+.+...+.| .+.-+
T Consensus 328 ~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv 407 (728)
T KOG4535|consen 328 QQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLV 407 (728)
T ss_pred hhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHH
Confidence 10 0 0 00112222222222 23446
Q ss_pred HHHHHHHHHHhchhhCHHH---HHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhh-----hhhhh----hHHHHHH
Q 010290 336 RSALATVIMGMAPILGKDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-----DLLSQ----SLLPAIV 403 (513)
Q Consensus 336 r~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~-----~~~~~----~l~~~l~ 403 (513)
|.++.+..+.+.-+.+-.. +.......+..-+.|+..++|..++.+++.|...+-. +.... .++..+.
T Consensus 408 ~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~ 487 (728)
T KOG4535|consen 408 KAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKML 487 (728)
T ss_pred HHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 7777777666554433222 1233344555667888889999999999998665421 11222 2222332
Q ss_pred Hhh---cCCChhHHHHHHHHHHHHHHHhCh---hhHHH----HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhH-
Q 010290 404 ELA---EDRHWRVRLAIIEYIPLLASQLGV---GFFDD----KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA- 472 (513)
Q Consensus 404 ~l~---~~~~~~vR~~~~~~l~~l~~~~~~---~~~~~----~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~- 472 (513)
... .-.+++||..++++++.+.+.+.+ ..+.. .+...+..........||=.++.++|.+.++-.-.+.
T Consensus 488 ~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~ 567 (728)
T KOG4535|consen 488 RSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQT 567 (728)
T ss_pred HHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccC
Confidence 222 223688999999999988876542 11221 1122222223344568999999999999885432211
Q ss_pred ---hhhhHHHHHhhhcC-cchHHH-HHHHHHHHhc
Q 010290 473 ---MQHIVPQVALIKSS-RNLVLN-SVLSLLKNAG 502 (513)
Q Consensus 473 ---~~~i~~~L~~~~~~-~~~~~r-~~~~~~~~i~ 502 (513)
...+.|.|..++.+ .|+-.| .++.++..-+
T Consensus 568 ~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 568 APWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred CCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence 25677888776654 477777 6666665544
No 106
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=0.00024 Score=62.81 Aligned_cols=338 Identities=16% Similarity=0.181 Sum_probs=185.1
Q ss_pred HhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchh-------hhhhhHHHHHhhccchh
Q 010290 29 SIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEY-------ANVLLPPLETLCTVEET 100 (513)
Q Consensus 29 a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~-------~~~l~~~l~~l~~~~~~ 100 (513)
....|..+.++.-+......++|.++. +..++..|+..++..++.+......... -..+++.+...+..+++
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 344555566666666777888898888 8889999999999999998886653221 24566777777788999
Q ss_pred HHHHHHHHHHHHHHhhcCh-H-HHHhhHHH--HHHHhhcCCCcchhhhHHhhhHhhcCCCCHH----HHHHHHHHHHHHc
Q 010290 101 CVRDKAVESLCRIGSQMRE-Q-DVVEHFIP--LVKRLAAGEWFTARVSSCGLFHVAYPSAPEA----LKTELRTIYRQLC 172 (513)
Q Consensus 101 ~vR~~a~~~l~~l~~~~~~-~-~~~~~~~~--~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~----~~~~l~~~l~~l~ 172 (513)
.|..+|++.+..++..-.. + .+.+.++. .+.++....+.-.|+.+..++-.+....+.. .+..++..+..-+
T Consensus 143 eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaEl 222 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAEL 222 (524)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHh
Confidence 9999999999998764211 1 01111111 1223333334455666666665555443332 3456666666544
Q ss_pred C-CCchHHHHHHHHhHHHHHHHhh-hhhh-HHHHHHHHHHhhh--ccchhHHHHHHHHHHHhhccCChhhhhh-------
Q 010290 173 Q-DDMPMVRRSAATNLGKFAATVE-AAHL-KSEIMSIFEELTQ--DDQDSVRLLAVEGCGALGKLLEPQDCVA------- 240 (513)
Q Consensus 173 ~-d~~~~vr~~a~~~l~~l~~~~~-~~~~-~~~l~~~l~~l~~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~------- 240 (513)
+ ..+.-|+..+.+....++..-. .+.. ...+++.+.+.+. |+++.-+..++.. +.+.++++....
T Consensus 223 kGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmg---fgkffgkeaimdvseeaic 299 (524)
T KOG4413|consen 223 KGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMG---FGKFFGKEAIMDVSEEAIC 299 (524)
T ss_pred cCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHH---HHHHhcchHHhhcCHHHHH
Confidence 4 4678899999888888886542 2222 2346666666553 3333332223333 333333322211
Q ss_pred -hH---HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC-Ccccc----chHHHHHHhcCCCcHHHHHHHHHhHHHHHhhh
Q 010290 241 -HI---LPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EPTRS----DVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 311 (513)
Q Consensus 241 -~l---~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-~~~~~----~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 311 (513)
.+ +....+..+..++.....++.++|.+...... +.... ..-..+.+....+...-..+++.+|..+...+
T Consensus 300 ealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagel 379 (524)
T KOG4413|consen 300 EALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGEL 379 (524)
T ss_pred HHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccc
Confidence 11 12222344455666777777788777654322 21111 11122222222222233445555665554332
Q ss_pred ChHHHHHhhhhhhhhhcCCC--cHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q 010290 312 NPELAIQHILPCVKELSSDS--SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (513)
Q Consensus 312 ~~~~~~~~l~~~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~ 387 (513)
.... ....|. ..+.|.....+...-.+ +. =+..+...++.+.++++.++.+.+..++.
T Consensus 380 rlkp----------eqitDgkaeerlrclifdaaaqstk-ld-------PleLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 380 RLKP----------EQITDGKAEERLRCLIFDAAAQSTK-LD-------PLELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred cCCh----------hhccccHHHHHHHHHHHHHHhhccC-CC-------hHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 1110 111232 23334333333222111 11 13456677888899999999999988765
No 107
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=0.0002 Score=66.92 Aligned_cols=282 Identities=15% Similarity=0.092 Sum_probs=173.6
Q ss_pred CcchhhhHHhhhHhhcC-CCCH--HHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhh--hHHHHHH-HHHHhh
Q 010290 138 WFTARVSSCGLFHVAYP-SAPE--ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH--LKSEIMS-IFEELT 211 (513)
Q Consensus 138 ~~~~R~~~~~~l~~~~~-~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~-~l~~l~ 211 (513)
.+..|......+..+.. ..-+ .....++..+..-..|++..+|..|+.+|+..+...+.+. ..+.++. ++..+.
T Consensus 230 ~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~ 309 (533)
T KOG2032|consen 230 KENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLY 309 (533)
T ss_pred cccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHh
Confidence 36667766666655442 2111 1456667777777889999999999999999998755432 2233444 444555
Q ss_pred hccchhHHHHHHHHHHHhhccCChhhhhhhHHHH---HHHhcCCCCHHHHHHHHHHHHHHHHHhCCC---ccccchH---
Q 010290 212 QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPV---IVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRSDVV--- 282 (513)
Q Consensus 212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~---l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~ll--- 282 (513)
.+.+.+|...++.+|..+.+.....+..+.+++. +..+..+.+..+|.++...++.++...|.. ++.+++.
T Consensus 310 D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~ 389 (533)
T KOG2032|consen 310 DDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRL 389 (533)
T ss_pred cCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcc
Confidence 6667899999999999888877766666665555 445678889999999999999999887753 2222222
Q ss_pred HHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcH-HHHHHHHHHHHHhchhhCHHHHHHhHHH
Q 010290 283 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ-HVRSALATVIMGMAPILGKDATIEQLLP 361 (513)
Q Consensus 283 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 361 (513)
..++-.++|+++.|-.++-..+.....+++ .+.+-..+...+ |... +.+.-.-.....+...+.. ....+..
T Consensus 390 ~~lllhl~d~~p~va~ACr~~~~~c~p~l~----rke~~~~~q~~l-d~~~~~~q~Fyn~~c~~L~~i~~d--~l~~~~t 462 (533)
T KOG2032|consen 390 APLLLHLQDPNPYVARACRSELRTCYPNLV----RKELYHLFQESL-DTDMARFQAFYNQWCIQLNHIHPD--ILMLLLT 462 (533)
T ss_pred ccceeeeCCCChHHHHHHHHHHHhcCchhH----HHHHHHHHhhhh-HHhHHHHHHHHHHHHHHHhhhCHH--HHHHHHH
Confidence 222335688988776544333333333322 233333332222 2221 2222222222222221111 1122334
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhhhhhhhh----hhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 010290 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426 (513)
Q Consensus 362 ~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~----~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~ 426 (513)
....+++...+.||.++...-+.+...+.... ....+...+..+..|+-..++..+..+++.+..
T Consensus 463 ~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 463 EDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred hchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 44556777778999998887777655543322 235677888899999999999999999877653
No 108
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=4.1e-05 Score=76.00 Aligned_cols=213 Identities=18% Similarity=0.280 Sum_probs=152.8
Q ss_pred HHHHHHHHcCCCchHHHHHHHHhHHHHHHHh--hhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhh
Q 010290 164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATV--EAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAH 241 (513)
Q Consensus 164 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 241 (513)
-++.....+.|+.+.+|..+...+..+.+.- .+-.....++.++...+.|++.-|=-.|++.+..+++.+++ .
T Consensus 728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e-----~ 802 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE-----D 802 (982)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-----h
Confidence 4566666778898999999999998888732 22233456888888999999999999999999999988654 3
Q ss_pred HHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhC---
Q 010290 242 ILPVIVNFS----QDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN--- 312 (513)
Q Consensus 242 l~~~l~~~~----~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~--- 312 (513)
++|-+.+.. +......|.-+.+++.+++...|+-. +...++..++....|++..-|.+++.++|.++....
T Consensus 803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v 882 (982)
T KOG4653|consen 803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV 882 (982)
T ss_pred hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence 555555522 22234567777899999998888754 345788999999999999999999999999998754
Q ss_pred hHHHHHhhhhhhhhh-cCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhc------------CCCChHHHHHHH
Q 010290 313 PELAIQHILPCVKEL-SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL------------KDEFPDVRLNII 379 (513)
Q Consensus 313 ~~~~~~~l~~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l------------~d~~~~vr~~a~ 379 (513)
.+.+ .++...+... ..|.+..+|++|+..+..+-...|.+ ++|++...+ .+++..+|..+.
T Consensus 883 sd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~d-----lLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaq 956 (982)
T KOG4653|consen 883 SDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGED-----LLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQ 956 (982)
T ss_pred hHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchh-----hHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 4444 3444444444 36889999999999999998777743 344332222 234455666666
Q ss_pred HHHHHhhh
Q 010290 380 SKLDQVNQ 387 (513)
Q Consensus 380 ~~l~~i~~ 387 (513)
.++..+-.
T Consensus 957 l~leei~a 964 (982)
T KOG4653|consen 957 LCLEEIQA 964 (982)
T ss_pred HHHHHHHH
Confidence 66665543
No 109
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.43 E-value=0.0028 Score=63.87 Aligned_cols=463 Identities=14% Similarity=0.119 Sum_probs=230.7
Q ss_pred HHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhh---hhhh
Q 010290 13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYA---NVLL 88 (513)
Q Consensus 13 ~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~---~~l~ 88 (513)
.+++.+..++.+.|.++.-++..|+...=|+ .|++++|++.+ +.+++..--..+-++|..+...+..++.. ...+
T Consensus 94 ~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd-~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~~ee~~~~~~~~l 172 (1005)
T KOG2274|consen 94 QLLNLLDDSNSKIRSAVAYAISSIAAVDYPD-EWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVDVEEMFFVGPVSL 172 (1005)
T ss_pred HHHhhhhccccccchHHHHHHHHHHhccCch-hhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHhcccccch
Confidence 3556667778889999999999998765554 58999999999 66677766677777777666533211100 0111
Q ss_pred H-H--HHHhhccchhHHHHHHH--HHHHHHHhhcCh------HH---HHhhHHHHHHHh-------hcCCCcchhhhHHh
Q 010290 89 P-P--LETLCTVEETCVRDKAV--ESLCRIGSQMRE------QD---VVEHFIPLVKRL-------AAGEWFTARVSSCG 147 (513)
Q Consensus 89 ~-~--l~~l~~~~~~~vR~~a~--~~l~~l~~~~~~------~~---~~~~~~~~l~~l-------~~d~~~~~R~~~~~ 147 (513)
+ + +..+..-.+...|..++ ..+......+.. +. +...+++-...+ ....++..|.....
T Consensus 173 ~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~~~~g~~~~~~~eilk 252 (1005)
T KOG2274|consen 173 AEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQRNDGSDFSLRMEILK 252 (1005)
T ss_pred hhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHH
Confidence 1 1 12233334444454444 333333222221 11 111222222111 11234667777777
Q ss_pred hhHhhcCCCCHH---HHHHHHHHHHHHc----------------------CCCchHHHHHHHHhHHHHH----HHhhhhh
Q 010290 148 LFHVAYPSAPEA---LKTELRTIYRQLC----------------------QDDMPMVRRSAATNLGKFA----ATVEAAH 198 (513)
Q Consensus 148 ~l~~~~~~~~~~---~~~~l~~~l~~l~----------------------~d~~~~vr~~a~~~l~~l~----~~~~~~~ 198 (513)
.+..++++++.. +....++...+.. .|.++. ++..-..+..+. ..+....
T Consensus 253 ~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e-~~~~~~l~i~i~eF~s~i~t~~~ 331 (1005)
T KOG2274|consen 253 CLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPE-EKSVETLVIQIVEFLSTIVTNRF 331 (1005)
T ss_pred HHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchh-hhChHHhhhhHHHHHHHHHHHHH
Confidence 777777666554 1111111111110 111111 111211111111 1111111
Q ss_pred h-------HHHHHHHHHH------------------hhhcc--chhHHHHHHHHHHHhhccCChhhhhh---hHHHHHH-
Q 010290 199 L-------KSEIMSIFEE------------------LTQDD--QDSVRLLAVEGCGALGKLLEPQDCVA---HILPVIV- 247 (513)
Q Consensus 199 ~-------~~~l~~~l~~------------------l~~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~---~l~~~l~- 247 (513)
+ ...+++.+.- ...|+ ...+|..+...+.++...++.....+ ..-..+.
T Consensus 332 ~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~e 411 (1005)
T KOG2274|consen 332 LSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQE 411 (1005)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence 1 1111221111 11122 23456666555555555555432111 1111111
Q ss_pred ----HhcCCC-CHHHHHHHHHHHHHHHHHhCCCc-ccc---chHHHHHHhcC-CCcHHHHHHHHHhHHHHHhh--hChHH
Q 010290 248 ----NFSQDK-SWRVRYMVANQLYELCEAVGPEP-TRS---DVVPAYVRLLR-DNEAEVRIAAAGKVTKICRI--LNPEL 315 (513)
Q Consensus 248 ----~~~~d~-~~~vr~~~~~~l~~l~~~~~~~~-~~~---~ll~~l~~~l~-d~~~~vr~~a~~~l~~~~~~--~~~~~ 315 (513)
..++.+ .|....+......... ... +.+ .+...+...+. ...|..-..++.+++.+... ..++.
T Consensus 412 s~at~~~~~~~~wk~qea~l~a~~~~~----~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~ 487 (1005)
T KOG2274|consen 412 SQATYLFNNESWWKIQEALLVAAESVR----IDDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQL 487 (1005)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhhcc----cCcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhH
Confidence 122333 3555555444443332 221 112 22222333332 33355555788888877765 23332
Q ss_pred HHHhhhh-hhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhh--
Q 010290 316 AIQHILP-CVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-- 392 (513)
Q Consensus 316 ~~~~l~~-~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~-- 392 (513)
. +.++. .+..+..|..+.+|.+++..+...++.---..+.+.++..+.++..+...+|-...+++|..+++.-...
T Consensus 488 ~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~a 566 (1005)
T KOG2274|consen 488 L-QHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAA 566 (1005)
T ss_pred H-HHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhh
Confidence 2 23332 3334446777889999999888777322222234677788888888888889888888888887642211
Q ss_pred hhhhhHHHHHHHhh--cCCChhHHHHHHHHHHHHHHHh-ChhhHHHHHHHHHHHHhcCch----hHHHHHHHHHHHHHHH
Q 010290 393 LLSQSLLPAIVELA--EDRHWRVRLAIIEYIPLLASQL-GVGFFDDKLGALCMQWLKDKV----YSIRDAAANNVKRLAE 465 (513)
Q Consensus 393 ~~~~~l~~~l~~l~--~~~~~~vR~~~~~~l~~l~~~~-~~~~~~~~~~~~l~~~l~d~~----~~VR~~a~~~l~~l~~ 465 (513)
.....+.|.+..+. .+.++.+-..+-.++..+.+.. .-+......+|.++..+.-+. +....-++..+..+.+
T Consensus 567 s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr 646 (1005)
T KOG2274|consen 567 SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLR 646 (1005)
T ss_pred hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHh
Confidence 12345555544432 1233355555555665555432 112335568899998887655 5667777888887777
Q ss_pred HhChh---hHhhhhHHHHHh
Q 010290 466 EFGPD---WAMQHIVPQVAL 482 (513)
Q Consensus 466 ~~~~~---~~~~~i~~~L~~ 482 (513)
.-.++ ...++..|.+.+
T Consensus 647 ~tp~pL~~~l~~~~FpaVak 666 (1005)
T KOG2274|consen 647 NTPSPLPNLLICYAFPAVAK 666 (1005)
T ss_pred cCCCCccHHHHHHHhHHhHh
Confidence 65543 224666777766
No 110
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=98.42 E-value=0.00012 Score=73.41 Aligned_cols=146 Identities=16% Similarity=0.198 Sum_probs=111.4
Q ss_pred HHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhc-CCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCCh
Q 010290 294 AEVRIAAAGKVTKICRILNPELAIQHILPCVKELS-SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFP 372 (513)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~ 372 (513)
+-||..+.-.++.+|-. .+.+...++|.+.+-+ ....-.+|..++-+++.+|.... ...+.+.|.+...|.|+.+
T Consensus 945 ~~vra~~vvTlakmcLa--h~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT--am~d~YiP~I~~~L~Dp~~ 1020 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLA--HDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT--AMTDRYIPMIAASLCDPSV 1020 (1529)
T ss_pred hHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH--HHHHHhhHHHHHHhcCchH
Confidence 35788888888888753 4556677889886544 45566788888888888875433 2357789999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHH
Q 010290 373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW 444 (513)
Q Consensus 373 ~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~ 444 (513)
-||..++-.|.++... |.-.+.-.++-.+.-.+-|.+..+|.-+=.+++.+...-.+-+|..+++.+++.+
T Consensus 1021 iVRrqt~ilL~rLLq~-~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~~l 1091 (1529)
T KOG0413|consen 1021 IVRRQTIILLARLLQF-GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYIIAL 1091 (1529)
T ss_pred HHHHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHH
Confidence 9999999999998764 2222334555555555678899999999999999998878888888899988775
No 111
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.42 E-value=3.3e-05 Score=68.38 Aligned_cols=186 Identities=12% Similarity=0.051 Sum_probs=118.8
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHhhc-ChHHHHh-hHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH-HHHHHHH
Q 010290 90 PLETLCTVEETCVRDKAVESLCRIGSQM-REQDVVE-HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA-LKTELRT 166 (513)
Q Consensus 90 ~l~~l~~~~~~~vR~~a~~~l~~l~~~~-~~~~~~~-~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~-~~~~l~~ 166 (513)
++.-+-..+++.+++.+..+++..+..- .++.+.+ ..++.+..+.+++++.+|..|..++..+....... ..+..++
T Consensus 17 Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~ 96 (254)
T PF04826_consen 17 LLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIP 96 (254)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 3333444567788888888888765542 2233333 26788888888888888888888777776554443 2233344
Q ss_pred HHHHH-cCC-CchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCC--hhhhhhhH
Q 010290 167 IYRQL-CQD-DMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE--PQDCVAHI 242 (513)
Q Consensus 167 ~l~~l-~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l 242 (513)
.+++. ..+ -+..++.++.+.|..+.-.-.........+|.+..++..++..+|..+++.|..++..-. .+-.....
T Consensus 97 ~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~ 176 (254)
T PF04826_consen 97 QVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQV 176 (254)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccc
Confidence 44442 222 367888888888888764332233344566777788888888889899998888886522 22233345
Q ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCC
Q 010290 243 LPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPE 275 (513)
Q Consensus 243 ~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~ 275 (513)
++.+..+++.. +..+-..++..+.++...+.++
T Consensus 177 ~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 177 LSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred hhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 56666666554 5566777777888887776654
No 112
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=0.00031 Score=69.85 Aligned_cols=189 Identities=14% Similarity=0.135 Sum_probs=129.9
Q ss_pred hhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHH----hhHHHHHHHhhcCC-CcchhhhHHhhhHhhcCCCCHH-
Q 010290 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVV----EHFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPEA- 159 (513)
Q Consensus 86 ~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~----~~~~~~l~~l~~d~-~~~~R~~~~~~l~~~~~~~~~~- 159 (513)
.+-.+|..+-...++...-.|+.-++++...-..+... ..+.|.+..+.+++ ++.+-..||+++..+++.++..
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 34455555655657777666666666665554444332 34788888888765 4888999999999999988876
Q ss_pred ---HHHHHHHHHHH-HcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCh
Q 010290 160 ---LKTELRTIYRQ-LCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 235 (513)
Q Consensus 160 ---~~~~l~~~l~~-l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (513)
.....+|.|+. ++.=.-..|.+++.++|..+.+..+.......-+-.....+.==.-.++..|+....+.++.+.+
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~s 327 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRS 327 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 22335666665 33445678999999999999987776544332222222222111235678888888888888876
Q ss_pred hh--hhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC
Q 010290 236 QD--CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP 274 (513)
Q Consensus 236 ~~--~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~ 274 (513)
+. +..+.+|.+..+++..+.+.-..++-++.+++..+..
T Consensus 328 d~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h 368 (1051)
T KOG0168|consen 328 DEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH 368 (1051)
T ss_pred ccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc
Confidence 54 3556899999999888888888888899999887654
No 113
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=4.4e-05 Score=72.27 Aligned_cols=280 Identities=14% Similarity=0.046 Sum_probs=178.1
Q ss_pred HHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHH
Q 010290 145 SCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVE 224 (513)
Q Consensus 145 ~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~ 224 (513)
+...++.+...++.+....+.+.+...-+...+.+...++-.++-....- ....+...+.+++...+...-.+|..
T Consensus 393 alyalGLI~Agfgr~~TeYL~e~~~~teDe~~~~l~yG~~LGiGL~~MgS----an~eiye~lKe~l~nD~a~~geAa~~ 468 (926)
T COG5116 393 ALYALGLIKAGFGREDTEYLLEYFLDTEDELTPELAYGVCLGIGLINMGS----ANREIYEKLKELLKNDRALLGEAAVY 468 (926)
T ss_pred eeeeehhhccCcCcccHHHHHHHhCcccccccHHHHHHHHhhhcchhccc----ccHHHHHHHHHHHhcchhhhhhhhhh
Confidence 44556666666777666666655544433345788888888777554321 23456677777777666555555655
Q ss_pred HHHHhhccCChhhhhhhHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHh
Q 010290 225 GCGALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGK 303 (513)
Q Consensus 225 ~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~ 303 (513)
..+-+.-... ....+.-+...... ...++.+...-.+.-+.. |.+ +..=..+.+++.|.++-.|.+..-+
T Consensus 469 gMGl~mLgt~----s~eai~dm~tya~ETqhe~i~Rglgig~aLi~y--grq---e~add~I~ell~d~ds~lRy~G~fs 539 (926)
T COG5116 469 GMGLLMLGTW----SVEAIEDMRTYAGETQHERIKRGLGIGFALILY--GRQ---EMADDYINELLYDKDSILRYNGVFS 539 (926)
T ss_pred ccceeeecCC----CHHHHHHHHHHhcchhhhhHHhhhhhhhhHhhh--hhH---HHHHHHHHHHhcCchHHhhhccHHH
Confidence 5554443322 23344444444433 345566666555544432 221 1223466778899999999888777
Q ss_pred HHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhc-CCCChHHHHHHHHHH
Q 010290 304 VTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKL 382 (513)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l 382 (513)
++.-....|.......+++ -..+|.+..||++++-+++-+|- . ....++-..++| ++.++.||..++-+|
T Consensus 540 ~alAy~GTgn~~vv~~lLh---~avsD~nDDVrRAAViAlGfvc~--~----D~~~lv~tvelLs~shN~hVR~g~AvaL 610 (926)
T COG5116 540 LALAYVGTGNLGVVSTLLH---YAVSDGNDDVRRAAVIALGFVCC--D----DRDLLVGTVELLSESHNFHVRAGVAVAL 610 (926)
T ss_pred HHHHHhcCCcchhHhhhhe---eecccCchHHHHHHHHheeeeEe--c----CcchhhHHHHHhhhccchhhhhhhHHHh
Confidence 6655444444333333332 22589999999999999988762 1 122344444444 556899999999999
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhH--HHHHHHHHHHHhcCchh
Q 010290 383 DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLKDKVY 450 (513)
Q Consensus 383 ~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~--~~~~~~~l~~~l~d~~~ 450 (513)
|-.|..-|. +..+..+..+..|++.-||++|+.+++.+.-++.++.- ...+...+.+.+.|+..
T Consensus 611 Giacag~G~----~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 611 GIACAGTGD----KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred hhhhcCCcc----HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhH
Confidence 999887665 55677888889999999999999999999888766532 12356666666766554
No 114
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.38 E-value=0.0037 Score=63.19 Aligned_cols=150 Identities=16% Similarity=0.169 Sum_probs=110.7
Q ss_pred HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHH---HhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhh
Q 010290 315 LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI---EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 391 (513)
Q Consensus 315 ~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~ 391 (513)
.+...+.|.+.+.+......+|.....+++.+....+..... +.++|.+++.|.=++..||..+.+++.......+.
T Consensus 863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 344567788877776555667777777777777766665433 67889999999888899998888888877554332
Q ss_pred --hhhhhhHHHHHHHhhcCCC---hhHHHHHHHHHHHHHHHhChh---hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q 010290 392 --DLLSQSLLPAIVELAEDRH---WRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRL 463 (513)
Q Consensus 392 --~~~~~~l~~~l~~l~~~~~---~~vR~~~~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l 463 (513)
......++|.+..+..|.+ -.||..|++++..+.+..+.. .|.+.++..+.+.|.|+..-||..|+.+=+.+
T Consensus 943 L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 943 LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 1223678888888877776 468999999999888755443 35677888899999999999999998875554
Q ss_pred H
Q 010290 464 A 464 (513)
Q Consensus 464 ~ 464 (513)
.
T Consensus 1023 ~ 1023 (1030)
T KOG1967|consen 1023 Y 1023 (1030)
T ss_pred h
Confidence 4
No 115
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.38 E-value=0.0012 Score=64.72 Aligned_cols=205 Identities=18% Similarity=0.152 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCC--hhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc
Q 010290 199 LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE--PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP 276 (513)
Q Consensus 199 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 276 (513)
+...++-.+.+.....+..||...++.+..+....+ ++...+.+...+...+.|..+.||..++.+|..+-..-+++.
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee 161 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE 161 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc
Confidence 444445555555556666777777777776665322 344556666667777777778888888777777754222221
Q ss_pred cccchHHHHHHhc-CCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHH-HHHhchhhCHHH
Q 010290 277 TRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATV-IMGMAPILGKDA 354 (513)
Q Consensus 277 ~~~~ll~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~-l~~l~~~~~~~~ 354 (513)
..+...+..++ .|++++||.+|+..+.. + +.-+|++.....|-+..+|..+-.- +..+ .... .
T Consensus 162 --~~v~n~l~~liqnDpS~EVRRaaLsnI~v-----d-----nsTlp~IveRarDV~~anRrlvY~r~lpki-d~r~--l 226 (892)
T KOG2025|consen 162 --CPVVNLLKDLIQNDPSDEVRRAALSNISV-----D-----NSTLPCIVERARDVSGANRRLVYERCLPKI-DLRS--L 226 (892)
T ss_pred --ccHHHHHHHHHhcCCcHHHHHHHHHhhcc-----C-----cccchhHHHHhhhhhHHHHHHHHHHhhhhh-hhhh--h
Confidence 23333443333 58888888888765543 1 3445888888888887777665443 3333 1111 1
Q ss_pred HHHhHHHHHHHhcCCCChHHHHHHHHHHHHh-hhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHH
Q 010290 355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQV-NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423 (513)
Q Consensus 355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i-~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~ 423 (513)
..+...-.+...++|.+..|+.++...+..= .... ...++..+..+=-+.+.+++..+++++-.
T Consensus 227 si~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~-----dgni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 227 SIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFS-----DGNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc-----cccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1234556677789999999999888876641 1110 12344444444334445777777777655
No 116
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.36 E-value=2.5e-05 Score=72.31 Aligned_cols=187 Identities=14% Similarity=0.104 Sum_probs=125.8
Q ss_pred HHHHHHHhcCc-cHHHHHHHhhcHHHHHHHhC---hHhhhhhhhhhhhh-ccC-CchHHHHHHHHHhhcccccccC---c
Q 010290 11 IAVLIDELKND-DIQLRLNSIRRLSTIARALG---EERTRKELIPFLSE-NND-DDDEVLLAMAEELGVFIPYVGG---L 81 (513)
Q Consensus 11 i~~l~~~l~~~-d~~~r~~a~~~l~~i~~~~~---~~~~~~~l~~~l~~-~~~-~~~~vr~~~~~~l~~~~~~~~~---~ 81 (513)
+..+++.+.+. ..+.|..|+..|..+...-+ .+++..+|+-.+.+ +.| .++..++.+.+.|.+++..-.. +
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D 367 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD 367 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence 55566667654 66889999887766642211 24566677777777 666 6777899999999988874322 1
Q ss_pred hhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH--
Q 010290 82 EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA-- 159 (513)
Q Consensus 82 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~-- 159 (513)
.....+...|+ -..|.++.|-..|.+++..+.....+...-..+-|+|.. .+...-..+...+..+++.++.+
T Consensus 368 stE~ai~K~Le-aa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL 442 (516)
T KOG2956|consen 368 STEIAICKVLE-AAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEEL 442 (516)
T ss_pred hHHHHHHHHHH-HHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHH
Confidence 11122333333 335666666666666666555554554444455566655 33333445566888899988887
Q ss_pred --HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHH
Q 010290 160 --LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSE 202 (513)
Q Consensus 160 --~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 202 (513)
..+++.|.+.+..++.+..||++++-||..+...+|.+...++
T Consensus 443 ~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePh 487 (516)
T KOG2956|consen 443 LNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPH 487 (516)
T ss_pred HHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhH
Confidence 5678889999999999999999999999999999996544433
No 117
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.35 E-value=4.7e-05 Score=67.43 Aligned_cols=191 Identities=9% Similarity=0.088 Sum_probs=136.0
Q ss_pred chHHHHHHhcC-CCcHHHHHHHHHhHHHHHhhhChHHHHH--hhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHH
Q 010290 280 DVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPELAIQ--HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI 356 (513)
Q Consensus 280 ~ll~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~--~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 356 (513)
+-+..+..+|+ ..+|.+++.+..+++.....-....+.. ..++.+..++.++++.+|..++.++..++.........
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 44466666666 4578999999999988655332222222 45688889999999999999999999888655443334
Q ss_pred HhHHHHHHHhc-CC-CChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh--Chhh
Q 010290 357 EQLLPIFLSLL-KD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL--GVGF 432 (513)
Q Consensus 357 ~~l~~~l~~~l-~d-~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~--~~~~ 432 (513)
+..++.+.+.. .+ -+..++.++++.|..+.-.-....+....+|.+..++..++..+|..++.++..++... ..+.
T Consensus 92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~L 171 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTREL 171 (254)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHH
Confidence 44455555433 33 36789999999999885443333344567788889999999999999999999888652 2334
Q ss_pred HHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHhChh
Q 010290 433 FDDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPD 470 (513)
Q Consensus 433 ~~~~~~~~l~~~l~d~-~~~VR~~a~~~l~~l~~~~~~~ 470 (513)
+..+..+.++.++... ..++...++..+..|.+.++++
T Consensus 172 l~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 172 LSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 4455677777777764 6788999999999998887765
No 118
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.34 E-value=3.4e-06 Score=66.46 Aligned_cols=107 Identities=20% Similarity=0.135 Sum_probs=70.4
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHHhhhhh---hhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChh---
Q 010290 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI---GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--- 431 (513)
Q Consensus 358 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~---~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~--- 431 (513)
.+++.+.+++.+.++.+|..++.+++.++... ........++|.+.+++.+++..+|..++.+++.++...+..
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 35666677777777777777777777776531 112223366777777777777777777777777776543221
Q ss_pred hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 010290 432 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA 464 (513)
Q Consensus 432 ~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~ 464 (513)
.....+++.+.+.+.+.+..+|..++.++..++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 122236777888888888888888888877664
No 119
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.34 E-value=0.0002 Score=65.85 Aligned_cols=203 Identities=18% Similarity=0.218 Sum_probs=137.0
Q ss_pred HHHhcCCCcHHHHHHHHHhHHHHHhhh-ChHH---HHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhC----HHHHH
Q 010290 285 YVRLLRDNEAEVRIAAAGKVTKICRIL-NPEL---AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG----KDATI 356 (513)
Q Consensus 285 l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~~---~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----~~~~~ 356 (513)
....+.+.....|.+++..+..+...- -.+. ....++..+...++-....-+..++.+++.++-.+| .+.+.
T Consensus 48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~ 127 (309)
T PF05004_consen 48 AIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF 127 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH
Confidence 344456667889999998888777542 2222 234556666666665555677778888888887765 34556
Q ss_pred HhHHHHHHHhcCCCC--hHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHHHHh-----hc-CC---------ChhHHHHHH
Q 010290 357 EQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDL-LSQSLLPAIVEL-----AE-DR---------HWRVRLAII 418 (513)
Q Consensus 357 ~~l~~~l~~~l~d~~--~~vr~~a~~~l~~i~~~~~~~~-~~~~l~~~l~~l-----~~-~~---------~~~vR~~~~ 418 (513)
+.+.|.+.+.+.|.. ..+|.+++.+|+.+.-..+.+. -...++..+..+ .+ ++ +..+..+|+
T Consensus 128 ~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL 207 (309)
T PF05004_consen 128 EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAAL 207 (309)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHH
Confidence 788999999998864 4678888888887654333221 112222333311 11 21 356999999
Q ss_pred HHHHHHHHHhChhhH---HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh---hh---HhhhhHHHHHhhhcCc
Q 010290 419 EYIPLLASQLGVGFF---DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DW---AMQHIVPQVALIKSSR 487 (513)
Q Consensus 419 ~~l~~l~~~~~~~~~---~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~---~~~~i~~~L~~~~~~~ 487 (513)
.+++-++..++...+ .+..+|.+..+|..++.+||.+|-++|+-|.+.... ++ ..+.++..|..+.++.
T Consensus 208 ~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~dS 285 (309)
T PF05004_consen 208 SAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATDS 285 (309)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHhc
Confidence 999999988777433 344789999999999999999999999999886553 22 1356777777766653
No 120
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=98.32 E-value=0.0036 Score=60.09 Aligned_cols=166 Identities=15% Similarity=0.078 Sum_probs=114.0
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHHhCh--Hhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhh
Q 010290 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGE--ERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVL 87 (513)
Q Consensus 11 i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l 87 (513)
+..++.+..++|..+|+.+++.|.-+...+++ +...+-|+..+.+ +.|..+.||..|..+|..+-..-+.+. ..+
T Consensus 93 ~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee--n~~ 170 (885)
T COG5218 93 FYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE--NRI 170 (885)
T ss_pred HHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--HHH
Confidence 66788889999999999999999999888876 5566677777777 889999999999999998876544332 334
Q ss_pred hHHHHH-hhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCC-cchhhhHHhhhHhhcCCCCHHHHHHHH
Q 010290 88 LPPLET-LCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEW-FTARVSSCGLFHVAYPSAPEALKTELR 165 (513)
Q Consensus 88 ~~~l~~-l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~-~~~R~~~~~~l~~~~~~~~~~~~~~l~ 165 (513)
..+|.. +-+|+++.||..|+--+. . + ..-.|++..-+.|-+ ...|..-.+++..+.........+.++
T Consensus 171 ~n~l~~~vqnDPS~EVRr~allni~---v--d-----nsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~ 240 (885)
T COG5218 171 VNLLKDIVQNDPSDEVRRLALLNIS---V--D-----NSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRIL 240 (885)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHee---e--C-----CCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceeh
Confidence 445544 447999999998663322 1 1 112456655555544 344555566666665544443333333
Q ss_pred HHHHHHcCCCchHHHHHHHHhHHH
Q 010290 166 TIYRQLCQDDMPMVRRSAATNLGK 189 (513)
Q Consensus 166 ~~l~~l~~d~~~~vr~~a~~~l~~ 189 (513)
.+...+.|.+..||.++...+..
T Consensus 241 -l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 241 -LMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred -hhhhcchhhhhhHHHHHHHHHHH
Confidence 55567778888899888877764
No 121
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.32 E-value=0.0054 Score=61.95 Aligned_cols=71 Identities=11% Similarity=-0.056 Sum_probs=56.2
Q ss_pred hhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHh
Q 010290 124 EHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATV 194 (513)
Q Consensus 124 ~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~ 194 (513)
..+-..+.+..-+++..+|.++++.+..++..-=++.++++++.+.+++.+.+..--..+.+++..+...+
T Consensus 89 ~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev 159 (1005)
T KOG2274|consen 89 ALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEV 159 (1005)
T ss_pred HHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHH
Confidence 33444444445578889999999999988887777789999999999999888777778888888887655
No 122
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.30 E-value=0.00027 Score=68.89 Aligned_cols=278 Identities=16% Similarity=0.177 Sum_probs=126.6
Q ss_pred hhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchH
Q 010290 99 ETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPM 178 (513)
Q Consensus 99 ~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~ 178 (513)
+...+..|...+..+.+.++. ..+.-+..+..+++|++..+|..|..-+..+++.- +++...+...|.++++..++.
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~--l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~~v~kvaDvL~QlL~tdd~~ 111 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPD--LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PEHVSKVADVLVQLLQTDDPV 111 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GG--GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT---HH
T ss_pred CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-HHHHhHHHHHHHHHHhcccHH
Confidence 344455555555555554433 12223344445555556666666666555555542 334566777788888877777
Q ss_pred HHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhh--hccchhHHHHHHHHHHHhhccCCh------hhhhhhHHHHHHHhc
Q 010290 179 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELT--QDDQDSVRLLAVEGCGALGKLLEP------QDCVAHILPVIVNFS 250 (513)
Q Consensus 179 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~--~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~ 250 (513)
....+-.+|..+.+.-+. ..+-.++..+. ..+++.+|..++..+..-...++. ++....+...+.+.+
T Consensus 112 E~~~v~~sL~~ll~~d~k----~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL 187 (556)
T PF05918_consen 112 ELDAVKNSLMSLLKQDPK----GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVL 187 (556)
T ss_dssp HHHHHHHHHHHHHHH-HH----HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCcH----HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHH
Confidence 777777777777764332 23333333343 234567899888877543332222 344556777788888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCc---cccchHHHHHHhc--C----CCcHHH----HHHHHHhHHHHHhhhChHHH-
Q 010290 251 QDKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLL--R----DNEAEV----RIAAAGKVTKICRILNPELA- 316 (513)
Q Consensus 251 ~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~ll~~l~~~l--~----d~~~~v----r~~a~~~l~~~~~~~~~~~~- 316 (513)
.|-...-=..++..|..+ ..++... ..+++++.+..-. . -++++. ..+.-.++.-+........+
T Consensus 188 ~DVTaeEF~l~m~lL~~l-k~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv 266 (556)
T PF05918_consen 188 QDVTAEEFELFMSLLKSL-KIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFV 266 (556)
T ss_dssp TT--HHHHHHHHHHHHTS-GG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHH
T ss_pred HhccHHHHHHHHHHHHhC-ccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHH
Confidence 773321111111111111 1111111 1245666665432 1 122232 22223333333333333333
Q ss_pred ---HHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCC------CChHHHHHHHHHHHHhhh
Q 010290 317 ---IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD------EFPDVRLNIISKLDQVNQ 387 (513)
Q Consensus 317 ---~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d------~~~~vr~~a~~~l~~i~~ 387 (513)
...++|.+..+ ....|...+..+..++...+... ...++|.+.++|.. ..+.....-++||-....
T Consensus 267 ~y~~~kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh 341 (556)
T PF05918_consen 267 NYMCEKVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFH 341 (556)
T ss_dssp HHHHHHTCCCTT---------HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS----------HHHHHHHHHHHH
T ss_pred HHHHHHhcCChhhC----ChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHH
Confidence 34455544333 55677788999999998888665 55566777666642 344454455555444433
Q ss_pred hh
Q 010290 388 VI 389 (513)
Q Consensus 388 ~~ 389 (513)
.+
T Consensus 342 ~L 343 (556)
T PF05918_consen 342 QL 343 (556)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 123
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.29 E-value=6.8e-06 Score=64.70 Aligned_cols=106 Identities=20% Similarity=0.155 Sum_probs=65.4
Q ss_pred hhhhhhhhcCCCcHHHHHHHHHHHHHhchhh---CHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhh--h-h
Q 010290 320 ILPCVKELSSDSSQHVRSALATVIMGMAPIL---GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--D-L 393 (513)
Q Consensus 320 l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--~-~ 393 (513)
++|.+..++.+.++.+|..++.++..++... ........++|.+.++++|+++.++..++.+|+.++...+. . .
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 4555666666666777777777777666431 11122235667777777777777777777777777654321 1 1
Q ss_pred hhhhHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 010290 394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (513)
Q Consensus 394 ~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~ 425 (513)
....+++.+...+.+.+..+|..++.++..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 22346677777777777777777777776554
No 124
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=0.00018 Score=70.39 Aligned_cols=258 Identities=15% Similarity=0.104 Sum_probs=159.4
Q ss_pred HHHHHHHhhhc-cchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccch
Q 010290 203 IMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDV 281 (513)
Q Consensus 203 l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 281 (513)
++.+|.+.+.+ +++.||..++-.++-.+..... ..+...+...+..++...-.++.-++|-+.-.-. ..+.
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~----~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~----~~ea 485 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSAN----EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTA----NQEA 485 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhccccc----HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcC----cHHH
Confidence 44555555543 4567777777766644433222 2355566666655554445555555665543222 2233
Q ss_pred HHHHHHhcCCCc-HHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHH
Q 010290 282 VPAYVRLLRDNE-AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360 (513)
Q Consensus 282 l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 360 (513)
+.-+.+.-.++. ..+.+...-.++. ..+|.+ +..=|++.+++.|.++-.|..-+..+..---..|.. ..+
T Consensus 486 iedm~~Ya~ETQHeki~RGl~vGiaL--~~ygrq---e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn----kai 556 (929)
T KOG2062|consen 486 IEDMLTYAQETQHEKIIRGLAVGIAL--VVYGRQ---EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN----KAI 556 (929)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHhHHH--HHhhhh---hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch----hhH
Confidence 443334333332 3333333222222 223333 233477778889999999998777764432222322 334
Q ss_pred HHHHHh-cCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhh-cCCChhHHHHHHHHHHHHHHHhChhhHHHHHH
Q 010290 361 PIFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 438 (513)
Q Consensus 361 ~~l~~~-l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~-~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~ 438 (513)
..++.. .+|.+..||++|..++|.++-.- +..+|...+++ ++-|..||..++.+++-.+..-|.. ..+
T Consensus 557 r~lLh~aVsD~nDDVrRaAVialGFVl~~d------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~----eAi 626 (929)
T KOG2062|consen 557 RRLLHVAVSDVNDDVRRAAVIALGFVLFRD------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK----EAI 626 (929)
T ss_pred HHhhcccccccchHHHHHHHHHheeeEecC------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH----HHH
Confidence 444444 78999999999999999886531 34455555554 5568999999999998887665543 356
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhH--hhhhHHHHHhhhcCc
Q 010290 439 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVALIKSSR 487 (513)
Q Consensus 439 ~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~--~~~i~~~L~~~~~~~ 487 (513)
..+-.+.+|++.-||+.|+-+++-|.-+..+... ...+...+.+...|+
T Consensus 627 ~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 627 NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDK 677 (929)
T ss_pred HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhh
Confidence 6677788899999999999999998877665433 256777777777766
No 125
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.23 E-value=0.0011 Score=64.68 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=19.5
Q ss_pred ChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHh
Q 010290 410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 445 (513)
Q Consensus 410 ~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l 445 (513)
....|.-.+..++.++..++... ...++|.+..+|
T Consensus 281 ~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L 315 (556)
T PF05918_consen 281 PEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLL 315 (556)
T ss_dssp ---HHHHHHHHHHHHHTT----T-HHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHH
Confidence 44567777888888888777654 445666666655
No 126
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.00025 Score=70.68 Aligned_cols=216 Identities=19% Similarity=0.238 Sum_probs=146.7
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhh
Q 010290 247 VNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCV 324 (513)
Q Consensus 247 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l 324 (513)
...+.|+...+|..++..+..+.+.-.. -.....++...+..++|.++-|--.|++.+..+++.++ +.++|.+
T Consensus 733 i~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----e~il~dL 807 (982)
T KOG4653|consen 733 ISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----EDILPDL 807 (982)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----hhhHHHH
Confidence 3445677778999999999888874322 22345789999999999999999999999999998743 3445555
Q ss_pred hhhcC----CCcHHHHHHHHHHHHHhchhhCHHHH--HHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhh---hhhhh
Q 010290 325 KELSS----DSSQHVRSALATVIMGMAPILGKDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLS 395 (513)
Q Consensus 325 ~~~~~----d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~---~~~~~ 395 (513)
..... ......|.-+.+++..++...|+-.+ .+.+...++....|++..-|..++..+|.++.... .+++
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~- 886 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF- 886 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH-
Confidence 44221 12234455555777777777775433 25677778888899988899999999999987653 4444
Q ss_pred hhHHHHHHHhh-cCCChhHHHHHHHHHHHHHHHhChhhHH---HH---HHHHHHHHh-cCchhHHHHHHHHHHHHHHHHh
Q 010290 396 QSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFD---DK---LGALCMQWL-KDKVYSIRDAAANNVKRLAEEF 467 (513)
Q Consensus 396 ~~l~~~l~~l~-~~~~~~vR~~~~~~l~~l~~~~~~~~~~---~~---~~~~l~~~l-~d~~~~VR~~a~~~l~~l~~~~ 467 (513)
..+...+..+. .|++..+|.+|+..+..+..+.|.+... .+ ....+.+.. .++...+|..|..++..+-..+
T Consensus 887 ~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l 966 (982)
T KOG4653|consen 887 HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAAL 966 (982)
T ss_pred HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Confidence 45555555443 4778999999999999999887754211 11 111222222 3555667777777777665544
Q ss_pred C
Q 010290 468 G 468 (513)
Q Consensus 468 ~ 468 (513)
.
T Consensus 967 ~ 967 (982)
T KOG4653|consen 967 E 967 (982)
T ss_pred H
Confidence 3
No 127
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.23 E-value=0.00057 Score=62.94 Aligned_cols=149 Identities=15% Similarity=0.218 Sum_probs=94.7
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC----CccccchHHHHHHhcCCCc--HHHHHHHHHhHHHHHhhhCh-
Q 010290 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRSDVVPAYVRLLRDNE--AEVRIAAAGKVTKICRILNP- 313 (513)
Q Consensus 241 ~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~ll~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~~~- 313 (513)
.+++.+.+.++.....-+..++++++-++-.+|. +.....+.|.+.+.+.|.. +.+|.+++.+|+.++-..+.
T Consensus 86 tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d 165 (309)
T PF05004_consen 86 TLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSD 165 (309)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCC
Confidence 3555566655554444455566777777766552 1223567777777777654 45667777777765543322
Q ss_pred -HHHHHhhhhhhh-----h----------hcCCCcHHHHHHHHHHHHHhchhhCHHHH---HHhHHHHHHHhcCCCChHH
Q 010290 314 -ELAIQHILPCVK-----E----------LSSDSSQHVRSALATVIMGMAPILGKDAT---IEQLLPIFLSLLKDEFPDV 374 (513)
Q Consensus 314 -~~~~~~l~~~l~-----~----------~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~v 374 (513)
+.. ..++..+. . ....++..+..+++.+|+-+...++...+ ....+|.+..+|..++.+|
T Consensus 166 ~~~~-~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~V 244 (309)
T PF05004_consen 166 EEET-EELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDV 244 (309)
T ss_pred hhHH-HHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 111 21112221 0 01123467999999999999887776333 3557899999999999999
Q ss_pred HHHHHHHHHHhhhhhh
Q 010290 375 RLNIISKLDQVNQVIG 390 (513)
Q Consensus 375 r~~a~~~l~~i~~~~~ 390 (513)
|.+|.++++-+.+...
T Consensus 245 RiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 245 RIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999998877644
No 128
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.20 E-value=0.00026 Score=65.76 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=18.3
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhCh
Q 010290 279 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP 313 (513)
Q Consensus 279 ~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 313 (513)
+++.|.+.+..+..+..||++|+.+|..+...+|-
T Consensus 447 ~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~ 481 (516)
T KOG2956|consen 447 PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGM 481 (516)
T ss_pred hhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhH
Confidence 34555555555555555555555555555555553
No 129
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=98.19 E-value=0.00094 Score=66.27 Aligned_cols=187 Identities=14% Similarity=0.160 Sum_probs=127.0
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhh--hhcC-----CCcHHHHHHHHHHHHHhchhhCH
Q 010290 280 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVK--ELSS-----DSSQHVRSALATVIMGMAPILGK 352 (513)
Q Consensus 280 ~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~--~~~~-----d~~~~vr~~~~~~l~~l~~~~~~ 352 (513)
+.++.++-.-.|++.+|...|-..|.++...+....+.+.++..+. ..-. --++.+|..++..+..=. ..
T Consensus 237 ~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~---~A 313 (501)
T PF13001_consen 237 ERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSV---IA 313 (501)
T ss_pred hHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhH---HH
Confidence 5666666667888889999999999888877766666666666555 2111 135677777666654422 11
Q ss_pred HHHHHhHHHHHHHhcCCC--ChHHHHHHHHHH---HHhhhhhhhhhh---hhhHHHHHHHhhc--------CCChhHHHH
Q 010290 353 DATIEQLLPIFLSLLKDE--FPDVRLNIISKL---DQVNQVIGIDLL---SQSLLPAIVELAE--------DRHWRVRLA 416 (513)
Q Consensus 353 ~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l---~~i~~~~~~~~~---~~~l~~~l~~l~~--------~~~~~vR~~ 416 (513)
....+.++.++...+.+. ...+|..++..+ ......++...+ .+.+...+....+ ..+...|..
T Consensus 314 a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~ 393 (501)
T PF13001_consen 314 ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSL 393 (501)
T ss_pred HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHH
Confidence 222355677777777777 677888888888 666666654432 2333333333342 235789999
Q ss_pred HHHHHHHHHHHhChhhH-HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh
Q 010290 417 IIEYIPLLASQLGVGFF-DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP 469 (513)
Q Consensus 417 ~~~~l~~l~~~~~~~~~-~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~ 469 (513)
+.+++|.+++....-+. .-.++..++.-+.++.++||-+.-++|+.+...+..
T Consensus 394 aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 394 AYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred HHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 99999999987554331 124677777777999999999999999999998865
No 130
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.12 E-value=0.0011 Score=70.97 Aligned_cols=291 Identities=16% Similarity=0.143 Sum_probs=158.2
Q ss_pred HhhccchhHHHHHHHHHHHHHHhhcChH-----HHHhhHHHHH----HHhhc--CCCcchhhhHHhhhHhh-----cCCC
Q 010290 93 TLCTVEETCVRDKAVESLCRIGSQMREQ-----DVVEHFIPLV----KRLAA--GEWFTARVSSCGLFHVA-----YPSA 156 (513)
Q Consensus 93 ~l~~~~~~~vR~~a~~~l~~l~~~~~~~-----~~~~~~~~~l----~~l~~--d~~~~~R~~~~~~l~~~-----~~~~ 156 (513)
.++.+.+.+||-..+-|+..+.+.+.++ .....+..++ ..+.. ++++..+..-..-+..+ ..--
T Consensus 57 ~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~ 136 (1266)
T KOG1525|consen 57 FLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLE 136 (1266)
T ss_pred HHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeecc
Confidence 3567888899998888888888776431 1222223332 22222 23333333333322211 1111
Q ss_pred -CHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHH-Hhh---hccchhHHHHHHHHHHHhhc
Q 010290 157 -PEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFE-ELT---QDDQDSVRLLAVEGCGALGK 231 (513)
Q Consensus 157 -~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~-~l~---~d~~~~vr~~a~~~l~~l~~ 231 (513)
.++...+++..|.....++.+.--......+..+.... +.+...++.++. +++ .|....-+..|-..+...+.
T Consensus 137 d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~--d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~ 214 (1266)
T KOG1525|consen 137 DCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEE--DTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCAD 214 (1266)
T ss_pred chHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhh
Confidence 22366777788888776654432222222222222221 222333333322 222 23333334434333333332
Q ss_pred cCChh-----------------------------------hhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc
Q 010290 232 LLEPQ-----------------------------------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP 276 (513)
Q Consensus 232 ~~~~~-----------------------------------~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 276 (513)
.+.+. +....++|.+..-+..++..+|..+...+|.+...-+...
T Consensus 215 ~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l 294 (1266)
T KOG1525|consen 215 NLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQL 294 (1266)
T ss_pred hhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhh
Confidence 22110 1123467777777778888899999999999876544433
Q ss_pred c--ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHH-hhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHH
Q 010290 277 T--RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQ-HILPCVKELSSDSSQHVRSALATVIMGMAPILGKD 353 (513)
Q Consensus 277 ~--~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~-~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~ 353 (513)
. .+.+...++.-+.|.+++||.++++....+.-.- +..... .+.-.+.....|.+.++|..++.....+.+ +.-.
T Consensus 295 ~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~-~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~-~~l~ 372 (1266)
T KOG1525|consen 295 SETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNN-PSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMK-FKLV 372 (1266)
T ss_pred cccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcC-chhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhH-hhhh
Confidence 3 4567888888899999999999999988877652 221111 122222223334444444433222211211 1112
Q ss_pred HHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhh
Q 010290 354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (513)
Q Consensus 354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~ 388 (513)
.... ++..+...+.|..+.||..|+..|..+.+.
T Consensus 373 ~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 373 YIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 2234 778888889999999999999999999874
No 131
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.06 E-value=5.7e-06 Score=54.47 Aligned_cols=53 Identities=28% Similarity=0.116 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHHHHhCh--hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q 010290 411 WRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRL 463 (513)
Q Consensus 411 ~~vR~~~~~~l~~l~~~~~~--~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l 463 (513)
|.+|..++.+++.++...+. ..+.+.++|.+..++.|+++.||..|+.+|+.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 67888888888876644332 224567888888999988889999999998864
No 132
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=98.05 E-value=0.0013 Score=63.04 Aligned_cols=170 Identities=17% Similarity=0.120 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh--hhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhh
Q 010290 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD 237 (513)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~ 237 (513)
.....+..++..++.++..||..+++.+..+...+++ +...+.++.-+.+-+.|.++.||..|+.+|..+-+..+.+.
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 4555556666666777777777777777777777776 55566666666666677777777777777776665444332
Q ss_pred hhhhHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHH-HHhHHHHHhhhChHH
Q 010290 238 CVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA-AGKVTKICRILNPEL 315 (513)
Q Consensus 238 ~~~~l~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a-~~~l~~~~~~~~~~~ 315 (513)
..+...+...+ +|++..||..++-.+.. .+...|.++....|-+...|+.. ...|+.++.... ..
T Consensus 168 --n~~~n~l~~~vqnDPS~EVRr~allni~v----------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~-ls 234 (885)
T COG5218 168 --NRIVNLLKDIVQNDPSDEVRRLALLNISV----------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKS-LS 234 (885)
T ss_pred --HHHHHHHHHHHhcCcHHHHHHHHHHHeee----------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhh-cc
Confidence 23333444433 45666666665432222 34455666666666655444432 223333322111 11
Q ss_pred HHHhhhhhhhhhcCCCcHHHHHHHHHHH
Q 010290 316 AIQHILPCVKELSSDSSQHVRSALATVI 343 (513)
Q Consensus 316 ~~~~l~~~l~~~~~d~~~~vr~~~~~~l 343 (513)
+.+.++ .+.+.+.|++..||.++..++
T Consensus 235 i~kri~-l~ewgl~dRe~sv~~a~~d~i 261 (885)
T COG5218 235 IDKRIL-LMEWGLLDREFSVKGALVDAI 261 (885)
T ss_pred ccceeh-hhhhcchhhhhhHHHHHHHHH
Confidence 122332 445555666666666666654
No 133
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.016 Score=57.12 Aligned_cols=189 Identities=13% Similarity=0.070 Sum_probs=125.9
Q ss_pred HHHHHHHHHHH-HcCCCchHHHHHHHHhHHHHHHHh----h-hhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccC
Q 010290 160 LKTELRTIYRQ-LCQDDMPMVRRSAATNLGKFAATV----E-AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL 233 (513)
Q Consensus 160 ~~~~l~~~l~~-l~~d~~~~vr~~a~~~l~~l~~~~----~-~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~ 233 (513)
..+++++.++. .+.-+...+-...-+.++.+...- | .+.....+-|.+.+.++-.+.+||..|+..+-.+....
T Consensus 126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~ 205 (1005)
T KOG1949|consen 126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR 205 (1005)
T ss_pred HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence 44555555543 333333333333334455554322 1 12334456688888899999999999999999888877
Q ss_pred Chhhh-------hhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh----CCCccccchHHHHHHhcCCCcHHHHHHHHH
Q 010290 234 EPQDC-------VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV----GPEPTRSDVVPAYVRLLRDNEAEVRIAAAG 302 (513)
Q Consensus 234 ~~~~~-------~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~----~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~ 302 (513)
+++.. .+.=...+.++++|+-+.||..+...+.++...+ ++....+-+-.++-.+-.|+..+||.+..+
T Consensus 206 dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~ 285 (1005)
T KOG1949|consen 206 DPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFK 285 (1005)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhc
Confidence 76432 2223445777899999999999988777765543 221111111222233456788899999999
Q ss_pred hHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhch
Q 010290 303 KVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 348 (513)
Q Consensus 303 ~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 348 (513)
.+..+...--.-...+.++|.+...+.|++.+||.++...+..+-.
T Consensus 286 gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 286 GLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred CcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 9999887543345678889999999999999999999999887753
No 134
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.02 E-value=0.0062 Score=65.55 Aligned_cols=327 Identities=14% Similarity=0.097 Sum_probs=170.2
Q ss_pred hhcCCCcchhhhHHhhhHhhcCCCCHH------HHHHHHHHHHHH---cCCC-chH--HHHHHHHhHHHHHH-----Hhh
Q 010290 133 LAAGEWFTARVSSCGLFHVAYPSAPEA------LKTELRTIYRQL---CQDD-MPM--VRRSAATNLGKFAA-----TVE 195 (513)
Q Consensus 133 l~~d~~~~~R~~~~~~l~~~~~~~~~~------~~~~l~~~l~~l---~~d~-~~~--vr~~a~~~l~~l~~-----~~~ 195 (513)
+.++++-.+|...+-|++.+.+.+.++ +..+++..+..- +.|. +|. -+-...+.+..+.- ...
T Consensus 58 ~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d 137 (1266)
T KOG1525|consen 58 LLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLED 137 (1266)
T ss_pred HhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccc
Confidence 466788899998888888776554433 455555555542 3343 332 23333444443331 112
Q ss_pred hhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC
Q 010290 196 AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE 275 (513)
Q Consensus 196 ~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~ 275 (513)
.+.+...+..++..+..++.+.--...+..+..+.... +.....++..+..-+-.+.......+...=..+...++..
T Consensus 138 ~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~--d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~ 215 (1266)
T KOG1525|consen 138 CQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEE--DTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADN 215 (1266)
T ss_pred hHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhh
Confidence 34556666677776776655432222222222222221 1222334444443332222223333322222233333322
Q ss_pred ccccchHHHHHHhcC-C--CcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCH
Q 010290 276 PTRSDVVPAYVRLLR-D--NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 352 (513)
Q Consensus 276 ~~~~~ll~~l~~~l~-d--~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~ 352 (513)
. .+.+-..+.+.+. + ....++...-..+-.+... .+ .....++|.+..-+...+..+|..+...+|.+-...+.
T Consensus 216 ~-~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~-~p-~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~ 292 (1266)
T KOG1525|consen 216 L-EDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRI-AP-QLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDS 292 (1266)
T ss_pred h-chhHHHHHHHHHhhccccccchhhHHHHHHHHHHHh-hH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchh
Confidence 1 1122222222221 1 1122233233333333222 12 23356778887777788899999999999988755444
Q ss_pred HHH--HHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhCh
Q 010290 353 DAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 430 (513)
Q Consensus 353 ~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~ 430 (513)
... .+.++..++..+.|...+||..++.+...+.-.-..-.-...++-.+....-|.+.++|..++-....+... .-
T Consensus 293 ~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~-~l 371 (1266)
T KOG1525|consen 293 QLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKF-KL 371 (1266)
T ss_pred hhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHh-hh
Confidence 333 456788888999999999999999988777544211111122333333333444444444333222222211 11
Q ss_pred hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 010290 431 GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (513)
Q Consensus 431 ~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~ 466 (513)
..... ++..+...+.|..+.||..|.+.+.++.+.
T Consensus 372 ~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 372 VYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 11122 566667788999999999999999999984
No 135
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.01 E-value=2.1e-05 Score=51.74 Aligned_cols=53 Identities=26% Similarity=0.276 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhchhhCHH--HHHHhHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 010290 333 QHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 385 (513)
Q Consensus 333 ~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i 385 (513)
|.||.+++.+|+.++...+.. .+.+.++|.+..+|+|+++.||.+|+.+|+.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 678888888888876554432 23467888888888888888888888888764
No 136
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.0056 Score=60.06 Aligned_cols=146 Identities=24% Similarity=0.217 Sum_probs=107.7
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH-------HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchh----
Q 010290 281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-------LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI---- 349 (513)
Q Consensus 281 ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-------~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~---- 349 (513)
.-|.+.+.++-.+..||..|+..+-.+....+++ ...+.-...+..++.|+-+.||..+..-+..+...
T Consensus 175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 4578888999999999999998888877666554 23334446677889999999999887776555432
Q ss_pred hCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 010290 350 LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426 (513)
Q Consensus 350 ~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~ 426 (513)
.++....+-+-.++-.+-.|...+||.++...|..+...-..-...+.++|.+-..+.|.+.+||.++++.+..+-.
T Consensus 255 iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 255 IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 23333333333334455678888999999999998876544444568899999999999999999999999877744
No 137
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.0097 Score=64.97 Aligned_cols=284 Identities=16% Similarity=0.150 Sum_probs=180.7
Q ss_pred hHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCC----chHHHHHHHH--hHHH----HHH-----HhhhhhhHHHHHHHHH
Q 010290 144 SSCGLFHVAYPSAPEALKTELRTIYRQLCQDD----MPMVRRSAAT--NLGK----FAA-----TVEAAHLKSEIMSIFE 208 (513)
Q Consensus 144 ~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~----~~~vr~~a~~--~l~~----l~~-----~~~~~~~~~~l~~~l~ 208 (513)
.+...++.++.+.+..+.-.+++.+....... ...|+..+.. ++.. ++. .+|++.+...-+.++.
T Consensus 803 ta~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~ 882 (2067)
T KOG1822|consen 803 TAVSLFGSVFPHVNNKIRLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALTLIV 882 (2067)
T ss_pred HHHHHHHHhccCccHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHh
Confidence 35556777888888887777777777665432 2334444333 3322 222 2345666666666777
Q ss_pred HhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCCcc---ccchHHH
Q 010290 209 ELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPT---RSDVVPA 284 (513)
Q Consensus 209 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~ll~~ 284 (513)
..+..+++..|..+.++++.++...+...+...+...+..-+. ..++..|..-.-++|.+-...|.-.. ...-+..
T Consensus 883 ~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~i 962 (2067)
T KOG1822|consen 883 NSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSI 962 (2067)
T ss_pred hhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHH
Confidence 7788889999999999999999999988877776666655554 45666777777888888877665332 2333557
Q ss_pred HHHhcCCCcH-HHHHHHHHhHHHHHhhhChHH--HHHhhhhhhhh-hcCCC--cHHHHHHHHHHHH------HhchhhCH
Q 010290 285 YVRLLRDNEA-EVRIAAAGKVTKICRILNPEL--AIQHILPCVKE-LSSDS--SQHVRSALATVIM------GMAPILGK 352 (513)
Q Consensus 285 l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~-~~~d~--~~~vr~~~~~~l~------~l~~~~~~ 352 (513)
++.+.+|+.. .|+..++.++..+....++-. +....+..+.. +++++ ...++.+.-+++. .+...+|+
T Consensus 963 llal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgp 1042 (2067)
T KOG1822|consen 963 LLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGP 1042 (2067)
T ss_pred HHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhccc
Confidence 7777788765 999999999999887655431 11111222222 22333 3345555555544 44444443
Q ss_pred HHH-------HH----hHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHH
Q 010290 353 DAT-------IE----QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 421 (513)
Q Consensus 353 ~~~-------~~----~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l 421 (513)
+.. .. ..+-...-++..+++.+..++++++..+.-.-......+.+++.+..++.+.-...|.+.+.++
T Consensus 1043 eL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~~~i~r~~~~~cl 1122 (2067)
T KOG1822|consen 1043 ELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSSYLILRRASFSCL 1122 (2067)
T ss_pred ccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcchhhhhhhhHHhhh
Confidence 221 11 1111122233445788999999999988654444444578889999988888777877777777
Q ss_pred HHHHHH
Q 010290 422 PLLASQ 427 (513)
Q Consensus 422 ~~l~~~ 427 (513)
..++..
T Consensus 1123 rql~~R 1128 (2067)
T KOG1822|consen 1123 RQLVQR 1128 (2067)
T ss_pred hHHhHH
Confidence 766654
No 138
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00046 Score=65.64 Aligned_cols=294 Identities=18% Similarity=0.175 Sum_probs=164.3
Q ss_pred HHHHHHHhcCccHHHHHH---HhhcHHHHHHHhChHhhhhhhhhhhhhccC-CchHHHHHHHHHhhcccccccCchhhhh
Q 010290 11 IAVLIDELKNDDIQLRLN---SIRRLSTIARALGEERTRKELIPFLSENND-DDDEVLLAMAEELGVFIPYVGGLEYANV 86 (513)
Q Consensus 11 i~~l~~~l~~~d~~~r~~---a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~-~~~~vr~~~~~~l~~~~~~~~~~~~~~~ 86 (513)
-+.+..+|-+++.+.|.. |+-++.-+-..+|.+ .-++|..++....| ..|.+...++--+|-..- |+.+ ..
T Consensus 372 ~~il~pYLP~e~ass~~~eGGalyalGLI~Agfgr~-~TeYL~e~~~~teDe~~~~l~yG~~LGiGL~~M--gSan--~e 446 (926)
T COG5116 372 YEILKPYLPSEVASSRQKEGGALYALGLIKAGFGRE-DTEYLLEYFLDTEDELTPELAYGVCLGIGLINM--GSAN--RE 446 (926)
T ss_pred hHhhhccCCcccchhhhccCceeeeehhhccCcCcc-cHHHHHHHhCcccccccHHHHHHHHhhhcchhc--cccc--HH
Confidence 455667777777655543 344444443333332 23455545444333 345666666655553332 2211 34
Q ss_pred hhHHHHHhhccchhHHHHHHHHHHHHHH-hhcChHHHHhhHHHHHHHhhcCCC-cchhhhHHhhhHhhcCCCCHHHHHHH
Q 010290 87 LLPPLETLCTVEETCVRDKAVESLCRIG-SQMREQDVVEHFIPLVKRLAAGEW-FTARVSSCGLFHVAYPSAPEALKTEL 164 (513)
Q Consensus 87 l~~~l~~l~~~~~~~vR~~a~~~l~~l~-~~~~~~~~~~~~~~~l~~l~~d~~-~~~R~~~~~~l~~~~~~~~~~~~~~l 164 (513)
+..-+..++..++...-++|...++-+. ...+.+. +.-+.+....+. .++.....-.++ ++-...++. .
T Consensus 447 iye~lKe~l~nD~a~~geAa~~gMGl~mLgt~s~ea-----i~dm~tya~ETqhe~i~Rglgig~a-Li~ygrqe~---a 517 (926)
T COG5116 447 IYEKLKELLKNDRALLGEAAVYGMGLLMLGTWSVEA-----IEDMRTYAGETQHERIKRGLGIGFA-LILYGRQEM---A 517 (926)
T ss_pred HHHHHHHHHhcchhhhhhhhhhccceeeecCCCHHH-----HHHHHHHhcchhhhhHHhhhhhhhh-HhhhhhHHH---H
Confidence 5556666655555444445554444332 1222222 222333333322 222221111111 111111222 2
Q ss_pred HHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHH
Q 010290 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244 (513)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 244 (513)
-..+.+++.|.++..|...+-+++.--.--|...+.+.++++ ..+|.+++||.+|+-+++-++-. ....++
T Consensus 518 dd~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~---avsD~nDDVrRAAViAlGfvc~~------D~~~lv 588 (926)
T COG5116 518 DDYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHY---AVSDGNDDVRRAAVIALGFVCCD------DRDLLV 588 (926)
T ss_pred HHHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhhee---ecccCchHHHHHHHHheeeeEec------Ccchhh
Confidence 235667888999999988776665433223334445555554 57899999999999999877632 122444
Q ss_pred HHHH-hcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHH--HHHhhh
Q 010290 245 VIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL--AIQHIL 321 (513)
Q Consensus 245 ~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~ 321 (513)
...+ +.++.++.||...+-+|+..+..-|.+ .-+..+..++.|++.-||++|.-+++.+.-.+.++. ....+.
T Consensus 589 ~tvelLs~shN~hVR~g~AvaLGiacag~G~~----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~ 664 (926)
T COG5116 589 GTVELLSESHNFHVRAGVAVALGIACAGTGDK----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRII 664 (926)
T ss_pred HHHHHhhhccchhhhhhhHHHhhhhhcCCccH----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHH
Confidence 4444 445668999999999999988766643 456777888899999999999999998877665441 123344
Q ss_pred hhhhhhcCCC
Q 010290 322 PCVKELSSDS 331 (513)
Q Consensus 322 ~~l~~~~~d~ 331 (513)
..+.+.+.|.
T Consensus 665 k~f~~vI~~K 674 (926)
T COG5116 665 KKFNRVIVDK 674 (926)
T ss_pred HHHHHHHhhh
Confidence 4444454444
No 139
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=0.013 Score=61.18 Aligned_cols=179 Identities=20% Similarity=0.191 Sum_probs=121.2
Q ss_pred HHHHHHHHHH---HhCCCccccchHHHHHHhcC----CCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcC-CCc
Q 010290 261 VANQLYELCE---AVGPEPTRSDVVPAYVRLLR----DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSS-DSS 332 (513)
Q Consensus 261 ~~~~l~~l~~---~~~~~~~~~~ll~~l~~~l~----d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-d~~ 332 (513)
....+..+++ .+|+......+.|++...++ .++|+++.+|.-+++.+.-. ...+...=+|.+...++ .++
T Consensus 897 ~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i--Sa~fces~l~llftimeksp~ 974 (1251)
T KOG0414|consen 897 LADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI--SAEFCESHLPLLFTIMEKSPS 974 (1251)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcCCC
Confidence 3444555544 23444445678899988884 45699999999999998643 22333444576666654 899
Q ss_pred HHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChh
Q 010290 333 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 412 (513)
Q Consensus 333 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~ 412 (513)
+.+|..++-.++.++-.++. +.+..-+.+...|.|+++.||..|+..+..++-. +.-.+ +..++.+...+.|++.+
T Consensus 975 p~IRsN~VvalgDlav~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn-dmiKV-KGql~eMA~cl~D~~~~ 1050 (1251)
T KOG0414|consen 975 PRIRSNLVVALGDLAVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN-DMIKV-KGQLSEMALCLEDPNAE 1050 (1251)
T ss_pred ceeeecchheccchhhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh-hhhHh-cccHHHHHHHhcCCcHH
Confidence 99999999999998865553 3455677888999999999999999998887543 11111 34566677778899999
Q ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCc
Q 010290 413 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDK 448 (513)
Q Consensus 413 vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~ 448 (513)
+|..|=..+..+...- .. .. +++|-++.-|+|+
T Consensus 1051 IsdlAk~FF~Els~k~-n~-iy-nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1051 ISDLAKSFFKELSSKG-NT-IY-NLLPDILSRLSNG 1083 (1251)
T ss_pred HHHHHHHHHHHhhhcc-cc-hh-hhchHHHHhhccC
Confidence 9888876666665442 11 11 2555555555554
No 140
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=97.95 E-value=0.0051 Score=61.10 Aligned_cols=222 Identities=17% Similarity=0.128 Sum_probs=136.9
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHH--HhcC-----CCCHHHHHHHHHHHHHHHHHhCC
Q 010290 202 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIV--NFSQ-----DKSWRVRYMVANQLYELCEAVGP 274 (513)
Q Consensus 202 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~--~~~~-----d~~~~vr~~~~~~l~~l~~~~~~ 274 (513)
..++.+.-...|++.+|...|-..+-.+...+.+..+...++.... .... -.++.+|.-++..|.+ ....
T Consensus 237 ~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~k---S~~A 313 (501)
T PF13001_consen 237 ERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSK---SVIA 313 (501)
T ss_pred hHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHH---hHHH
Confidence 3444444455788888999998888888877777666666666555 2111 1245666655554444 2221
Q ss_pred CccccchHHHHHHhcCCC--cHHHHHHHHHhH---HHHHhhhChHH---HHHhhhhhhhhhcC--------CCcHHHHHH
Q 010290 275 EPTRSDVVPAYVRLLRDN--EAEVRIAAAGKV---TKICRILNPEL---AIQHILPCVKELSS--------DSSQHVRSA 338 (513)
Q Consensus 275 ~~~~~~ll~~l~~~l~d~--~~~vr~~a~~~l---~~~~~~~~~~~---~~~~l~~~l~~~~~--------d~~~~vr~~ 338 (513)
-...+.++.++...+... +..+|..+++.+ ......+++.. +.+.+...+....+ ..+...|..
T Consensus 314 a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~ 393 (501)
T PF13001_consen 314 ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSL 393 (501)
T ss_pred HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHH
Confidence 122366777777777777 678888888888 77777666542 22222222222331 245689999
Q ss_pred HHHHHHHhchhhCHHHHH-HhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhh-----hhhH-HHHHHHhhcCCCh
Q 010290 339 LATVIMGMAPILGKDATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL-----SQSL-LPAIVELAEDRHW 411 (513)
Q Consensus 339 ~~~~l~~l~~~~~~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~-----~~~l-~~~l~~l~~~~~~ 411 (513)
+.+++|.+++....-+.. -.++..+++-|.++.+++|.++-++|..+...+....- .... .-.+.....+...
T Consensus 394 aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 473 (501)
T PF13001_consen 394 AYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVR 473 (501)
T ss_pred HHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhH
Confidence 999999999876654422 34667777777888999999999999988776643211 0111 1122222334456
Q ss_pred hHHHHHHHHHHHHHH
Q 010290 412 RVRLAIIEYIPLLAS 426 (513)
Q Consensus 412 ~vR~~~~~~l~~l~~ 426 (513)
.+|..|+++...+..
T Consensus 474 ~~R~~avk~an~~fp 488 (501)
T PF13001_consen 474 SCRYAAVKYANACFP 488 (501)
T ss_pred HHHHHHHHHHHHhCC
Confidence 677777777665543
No 141
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.91 E-value=2e-05 Score=44.45 Aligned_cols=30 Identities=33% Similarity=0.393 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 010290 437 LGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (513)
Q Consensus 437 ~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~ 466 (513)
++|.++++++|++++||.+|+.+++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 467788888888888888888888887653
No 142
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.89 E-value=0.0081 Score=53.80 Aligned_cols=140 Identities=11% Similarity=0.049 Sum_probs=68.2
Q ss_pred HhhhccchhHHHHHHHHHHHhhccCChhhh----hhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh--CCCccccchH
Q 010290 209 ELTQDDQDSVRLLAVEGCGALGKLLEPQDC----VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV--GPEPTRSDVV 282 (513)
Q Consensus 209 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~--~~~~~~~~ll 282 (513)
..+.++++.+|..|+..|+.+...++++.. ...++.++.+.+.| +..-..++.++..+...- +.+. ...++
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D--~~~~~~~l~gl~~L~~~~~~~~~~-~~~i~ 82 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD--HACVQPALKGLLALVKMKNFSPES-AVKIL 82 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc--HhhHHHHHHHHHHHHhCcCCChhh-HHHHH
Confidence 456777888888888888888877775432 23355555555533 323333366666665221 1111 12233
Q ss_pred HHHHHhcC--CCcHHHHHHHHHhHHHHHhhhChH--HHHHhhhhhhhhhc-CCCcHHHHHHHHHHHHHhchhhC
Q 010290 283 PAYVRLLR--DNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELS-SDSSQHVRSALATVIMGMAPILG 351 (513)
Q Consensus 283 ~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~ 351 (513)
..+.+... ......|..+.+.+..+.+..... ...+.++..+.+.+ .+++|+.-.-+...+..+...+.
T Consensus 83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 33322211 122456666666666665543211 11122233332332 34556555555555555544443
No 143
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.04 Score=55.13 Aligned_cols=222 Identities=14% Similarity=0.126 Sum_probs=130.1
Q ss_pred HHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHH------HHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh---
Q 010290 126 FIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALK------TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--- 196 (513)
Q Consensus 126 ~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~------~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--- 196 (513)
.+.++....+..++.+|..+++++.++....|.+.. +.-+..+..++.|....||..+.-.|.++.+..+.
T Consensus 123 ~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQK 202 (970)
T KOG0946|consen 123 NITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQK 202 (970)
T ss_pred hHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHH
Confidence 456777777888999999999999999999888843 33457788889999999999999999988875443
Q ss_pred hhhHHHHHHHHHHhhhcc----chhHHHHHHHHHHHhhcc-CChhhhhh--hHHHHHHHhc-----CCC---CHHHHHH-
Q 010290 197 AHLKSEIMSIFEELTQDD----QDSVRLLAVEGCGALGKL-LEPQDCVA--HILPVIVNFS-----QDK---SWRVRYM- 260 (513)
Q Consensus 197 ~~~~~~l~~~l~~l~~d~----~~~vr~~a~~~l~~l~~~-~~~~~~~~--~l~~~l~~~~-----~d~---~~~vr~~- 260 (513)
-.+.+.++.-+..++..+ .--|-.-++..+..+.+. ...+.+.. ..+|.+.+++ .|. .|...+.
T Consensus 203 lVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~ 282 (970)
T KOG0946|consen 203 LVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQ 282 (970)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHH
Confidence 112223333333333322 124555566666666654 22332221 2455555433 343 5654332
Q ss_pred -HHHHHHHHHHHhCCCc------------cccchHHHHHHhcCCC--cHHHHHHHHHhHHHHHhhhCh--HHHHHhhhhh
Q 010290 261 -VANQLYELCEAVGPEP------------TRSDVVPAYVRLLRDN--EAEVRIAAAGKVTKICRILNP--ELAIQHILPC 323 (513)
Q Consensus 261 -~~~~l~~l~~~~~~~~------------~~~~ll~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~ 323 (513)
+..+|..+...+.+.. ....++..+...+.++ ..+|+..++-+.+.+...... +.+.+...|.
T Consensus 283 Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~ 362 (970)
T KOG0946|consen 283 NVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPS 362 (970)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCC
Confidence 2223333333332211 1235667777666655 467888888888877764311 1222222221
Q ss_pred -----------hhhhc-CCCcHHHHHHHHHHHHHhc
Q 010290 324 -----------VKELS-SDSSQHVRSALATVIMGMA 347 (513)
Q Consensus 324 -----------l~~~~-~d~~~~vr~~~~~~l~~l~ 347 (513)
+..+. +...+..|.++..++.++.
T Consensus 363 ~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l 398 (970)
T KOG0946|consen 363 IPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYL 398 (970)
T ss_pred CCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 22222 3345688999999987764
No 144
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.83 E-value=0.0052 Score=56.79 Aligned_cols=176 Identities=18% Similarity=0.201 Sum_probs=99.5
Q ss_pred HHH-HHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhh
Q 010290 163 ELR-TIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAH 241 (513)
Q Consensus 163 ~l~-~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 241 (513)
.++ ..+...++++++.||+.+.+++|-.+-. ++ ......++.+...++.+++.+|..|++++..+....|...+...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Ll-d~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLL-DK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-Ch-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence 444 3444678888899999999999976643 32 23344556666666666888999999999888877664322110
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhh--hCh-HHHHH
Q 010290 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI--LNP-ELAIQ 318 (513)
Q Consensus 242 l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~--~~~-~~~~~ 318 (513)
- +.+ .......++..+.+.+.+.++++|..|++.+..+.-. +.. ..+..
T Consensus 104 ~---------~~~-------------------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~ 155 (298)
T PF12719_consen 104 S---------DND-------------------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLS 155 (298)
T ss_pred h---------ccC-------------------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 0 000 1111345666666667666777777777777775432 222 22222
Q ss_pred hhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhC--HHHHHHhHHHHHHHhcC
Q 010290 319 HILPCVKELSSDSSQHVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLK 368 (513)
Q Consensus 319 ~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~ 368 (513)
.++-..-.-....+.+.|......+..++.... ...+.+.++|.+..+.+
T Consensus 156 ~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 156 RLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSN 207 (298)
T ss_pred HHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 222111111233456777777777666664322 12233445555555444
No 145
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.83 E-value=0.011 Score=52.95 Aligned_cols=227 Identities=17% Similarity=0.220 Sum_probs=143.2
Q ss_pred HHHHcCCCchHHHHHHHHhHHHHHHHhhhhhh----HHHHHHHHHHhhhccchhHHHHHHHHHHHhhcc--CChhhhhhh
Q 010290 168 YRQLCQDDMPMVRRSAATNLGKFAATVEAAHL----KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL--LEPQDCVAH 241 (513)
Q Consensus 168 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~ 241 (513)
+-..+.++++.+|..+...|+.+...++++.. .+.++..+..-+.| ...+..+ +.++..+... ++.+. ...
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D-~~~~~~~-l~gl~~L~~~~~~~~~~-~~~ 80 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD-HACVQPA-LKGLLALVKMKNFSPES-AVK 80 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc-HhhHHHH-HHHHHHHHhCcCCChhh-HHH
Confidence 34457788999999999999999988876433 34566666666643 3334443 7777777643 22222 333
Q ss_pred HHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcC-CCcHHHHHHHHHhHHHHHhhhChHHH
Q 010290 242 ILPVIVNFSQ--DKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPELA 316 (513)
Q Consensus 242 l~~~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~ 316 (513)
++..+.+... .-....|..+.+.+..+........ ....++..+.+.++ +.||.--..+.+.+..+...+....+
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~ 160 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEF 160 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchh
Confidence 4444433222 2345689888888888877643221 23456667666664 45787777788888888877766655
Q ss_pred HHhhhhhhhhhc--------CCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhh
Q 010290 317 IQHILPCVKELS--------SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (513)
Q Consensus 317 ~~~l~~~l~~~~--------~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~ 388 (513)
.+.+...+.... +|+..-.|......+..... ....+.+..+|.+++-|.++.+.++..++.+|...+..
T Consensus 161 ~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 161 AEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 666655554332 24332233333333333221 23345677899999999999999999999999999998
Q ss_pred hhhhhhhhhHH
Q 010290 389 IGIDLLSQSLL 399 (513)
Q Consensus 389 ~~~~~~~~~l~ 399 (513)
+|...+.+...
T Consensus 239 y~~~~~~~~~~ 249 (262)
T PF14500_consen 239 YGADSLSPHWS 249 (262)
T ss_pred CCHHHHHHHHH
Confidence 88765543333
No 146
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.81 E-value=0.054 Score=61.13 Aligned_cols=285 Identities=13% Similarity=0.164 Sum_probs=170.1
Q ss_pred hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCh-h-----hhhhhHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHH
Q 010290 199 LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-Q-----DCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEA 271 (513)
Q Consensus 199 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~-----~~~~~l~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~ 271 (513)
.|..+-+.+.+...+.+..++..|+..|..++..+-+ + .+...++..+...+ ...+..+|..+++++.+|...
T Consensus 1134 iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s 1213 (1780)
T PLN03076 1134 IWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLS 1213 (1780)
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 3444555566655566678999999998887765332 2 23334555555544 445778999999999999877
Q ss_pred hCCCc--cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhCh------HHHHHhhhhhhhhhcCCC-cHHHHHHHHHH
Q 010290 272 VGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP------ELAIQHILPCVKELSSDS-SQHVRSALATV 342 (513)
Q Consensus 272 ~~~~~--~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~------~~~~~~l~~~l~~~~~d~-~~~vr~~~~~~ 342 (513)
.+... -...++..+.....+.++.+-..|.+.+..+....-. ......++.++..+.... +..+-..++..
T Consensus 1214 ~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~l 1293 (1780)
T PLN03076 1214 RVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAF 1293 (1780)
T ss_pred HHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHH
Confidence 66533 2356777777777788888888899988877654211 123355666776666433 24444455555
Q ss_pred HHHhchhh-----------------------------------CHHHHHHhHHHHHHH---hcCCCChHHHHHHHHHHHH
Q 010290 343 IMGMAPIL-----------------------------------GKDATIEQLLPIFLS---LLKDEFPDVRLNIISKLDQ 384 (513)
Q Consensus 343 l~~l~~~~-----------------------------------~~~~~~~~l~~~l~~---~l~d~~~~vr~~a~~~l~~ 384 (513)
+..++..+ +.+......+|++.. +..|+.++||..|+.+|=.
T Consensus 1294 L~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~ 1373 (1780)
T PLN03076 1294 LRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFD 1373 (1780)
T ss_pred HHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 54332211 011111234555544 4679999999999999888
Q ss_pred hhhhhhhh----h----hhhhHHHHHHHhhcC-----------------------CChhHHHHHHHHHHHHHHHhChhh-
Q 010290 385 VNQVIGID----L----LSQSLLPAIVELAED-----------------------RHWRVRLAIIEYIPLLASQLGVGF- 432 (513)
Q Consensus 385 i~~~~~~~----~----~~~~l~~~l~~l~~~-----------------------~~~~vR~~~~~~l~~l~~~~~~~~- 432 (513)
+....|.. . +...+.|.+..+-.+ ..| ....+..++..++..+..-+
T Consensus 1374 iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~W-l~eT~~~AL~~lvdLft~fFd 1452 (1780)
T PLN03076 1374 TLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAW-LYETCTLALQLVVDLFVKFYP 1452 (1780)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 87766643 2 223455555443210 013 34555555555554432211
Q ss_pred ----HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHh---hhhHHHHHhhh
Q 010290 433 ----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM---QHIVPQVALIK 484 (513)
Q Consensus 433 ----~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~---~~i~~~L~~~~ 484 (513)
..+.++..+..+...++..+-.....++..+....|..+.. +.++..+.++.
T Consensus 1453 ~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf 1511 (1780)
T PLN03076 1453 TVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAA 1511 (1780)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 22334455555666778888888899999998888764321 34444444433
No 147
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.74 E-value=0.0005 Score=69.14 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=119.6
Q ss_pred hhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccc---cchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhh
Q 010290 235 PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR---SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 311 (513)
Q Consensus 235 ~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 311 (513)
++.+...+.|.+.+......-.+|.....+|+......+.+... +.++|.+++.+.=++..||-.+...+..+....
T Consensus 861 kQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~ 940 (1030)
T KOG1967|consen 861 KQRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES 940 (1030)
T ss_pred HHHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc
Confidence 45567778898888887656667888889999988888776543 578999999999999999999999988877654
Q ss_pred Ch--HHHHHhhhhhhhhhcCCCc---HHHHHHHHHHHHHhchhhCHH---HHHHhHHHHHHHhcCCCChHHHHHHHHHHH
Q 010290 312 NP--ELAIQHILPCVKELSSDSS---QHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLD 383 (513)
Q Consensus 312 ~~--~~~~~~l~~~l~~~~~d~~---~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 383 (513)
++ ......++|.+..+-.|.+ ..||..++++++.+.+..+.. .+.+.++..+.+.|.|+..-||..|.++=+
T Consensus 941 ~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 941 ETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred cccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 42 2445788899988877665 689999999999998855432 356778889999999999999999988765
Q ss_pred Hh
Q 010290 384 QV 385 (513)
Q Consensus 384 ~i 385 (513)
..
T Consensus 1021 ~W 1022 (1030)
T KOG1967|consen 1021 NW 1022 (1030)
T ss_pred hh
Confidence 43
No 148
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.74 E-value=5.8e-05 Score=42.55 Aligned_cols=29 Identities=45% Similarity=0.518 Sum_probs=18.9
Q ss_pred HHHHHHHHcCCCchHHHHHHHHhHHHHHH
Q 010290 164 LRTIYRQLCQDDMPMVRRSAATNLGKFAA 192 (513)
Q Consensus 164 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~ 192 (513)
++|.+.++++|++|+||.+++.+++.+++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 35666666777777777777777776665
No 149
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.72 E-value=0.0015 Score=66.74 Aligned_cols=186 Identities=18% Similarity=0.192 Sum_probs=127.0
Q ss_pred ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH----HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchh---h
Q 010290 278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI---L 350 (513)
Q Consensus 278 ~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~---~ 350 (513)
.++-+|+.++.|-.+.- |..|+..|++|... |+- .+.=.++|++.++++++-...|...+..+..+... +
T Consensus 470 PPeQLPiVLQVLLSQvH--RlRAL~LL~RFLDl-GpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SC 546 (1387)
T KOG1517|consen 470 PPEQLPIVLQVLLSQVH--RLRALVLLARFLDL-GPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSC 546 (1387)
T ss_pred ChHhcchHHHHHHHHHH--HHHHHHHHHHHhcc-chhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchh
Confidence 34566666665544433 55578888888763 432 12235789999999999999999888887776521 1
Q ss_pred CHHHHHHhHHHHHHHhcCC-C--ChHHHHHHHHHHHHhhhhh--hhh-hhhhhHHHHHHHhhcCC-ChhHHHHHHHHHHH
Q 010290 351 GKDATIEQLLPIFLSLLKD-E--FPDVRLNIISKLDQVNQVI--GID-LLSQSLLPAIVELAEDR-HWRVRLAIIEYIPL 423 (513)
Q Consensus 351 ~~~~~~~~l~~~l~~~l~d-~--~~~vr~~a~~~l~~i~~~~--~~~-~~~~~l~~~l~~l~~~~-~~~vR~~~~~~l~~ 423 (513)
..+.+.+..-..+.+.|.+ . .++-|..++-.|+.|+..+ |.+ .+...++....+.++|+ .+-.|+.++-+++.
T Consensus 547 Q~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~ 626 (1387)
T KOG1517|consen 547 QADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGR 626 (1387)
T ss_pred HHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 1222222222233344444 1 2478888888899888764 333 24557788888888885 79999999999999
Q ss_pred HHHHhChhhH---HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 010290 424 LASQLGVGFF---DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (513)
Q Consensus 424 l~~~~~~~~~---~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~ 466 (513)
+-+......+ ....-.-+..++.|+.++||-+|+-+||.+...
T Consensus 627 LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 627 LWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 9876544322 123456678899999999999999999999886
No 150
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.67 E-value=0.11 Score=54.68 Aligned_cols=134 Identities=16% Similarity=0.181 Sum_probs=96.5
Q ss_pred HHHHHhHHHHHHHhcCC----CChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhc-CCChhHHHHHHHHHHHHHHH
Q 010290 353 DATIEQLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQ 427 (513)
Q Consensus 353 ~~~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~-~~~~~vR~~~~~~l~~l~~~ 427 (513)
+.....+.|++.+.++. .+|+++.+|.-+|++++.. ..+ +-+.-+|.+...++ +++..+|..++-+++.++-.
T Consensus 914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~-fces~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAE-FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHH-HHHHHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence 34446778888888854 4689999999999998653 222 33566777777665 88999999999999999866
Q ss_pred hChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhhcCcchHHH
Q 010290 428 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKSSRNLVLN 492 (513)
Q Consensus 428 ~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~~~~~~~r 492 (513)
++.- .+-..+.+...+.|+++.||+.|..++..|.-+- ..-.+-.++.+..++.|++...|
T Consensus 992 fpnl--ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd--miKVKGql~eMA~cl~D~~~~Is 1052 (1251)
T KOG0414|consen 992 FPNL--IEPWTEHLYRRLRDESPSVRKTALLVLSHLILND--MIKVKGQLSEMALCLEDPNAEIS 1052 (1251)
T ss_pred cccc--cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh--hhHhcccHHHHHHHhcCCcHHHH
Confidence 5442 2346788899999999999999999999887631 11124455666666666655555
No 151
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.61 E-value=0.084 Score=51.89 Aligned_cols=363 Identities=11% Similarity=0.045 Sum_probs=188.6
Q ss_pred hhHHHHHHHhhcCCC-cchhhhHHhhhHhhcCCCCHH------HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh
Q 010290 124 EHFIPLVKRLAAGEW-FTARVSSCGLFHVAYPSAPEA------LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA 196 (513)
Q Consensus 124 ~~~~~~l~~l~~d~~-~~~R~~~~~~l~~~~~~~~~~------~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 196 (513)
...++.+.++..+++ ..++..+.+++..+.++.+.. +...+++.+..+...+...+-..-+. +...+.....
T Consensus 94 ~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~-~~a~~s~~~~ 172 (678)
T KOG1293|consen 94 IIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVS-RAAHLSSTKD 172 (678)
T ss_pred HhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhh-hhccccccch
Confidence 345677777777766 888999999999888765322 44566666666655222111111111 1111111000
Q ss_pred hh---hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChh-----h-----hhhhHHH--HHHHhcCCCCHHHHHHH
Q 010290 197 AH---LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ-----D-----CVAHILP--VIVNFSQDKSWRVRYMV 261 (513)
Q Consensus 197 ~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-----~-----~~~~l~~--~l~~~~~d~~~~vr~~~ 261 (513)
.. ....+...+.-+....+-.+|.+|+.++..-...+-.+ . ....+.+ .+.++..++....|...
T Consensus 173 hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~s 252 (678)
T KOG1293|consen 173 HQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRS 252 (678)
T ss_pred hhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHH
Confidence 00 00112222222333335678999999988433322111 1 1112344 45567788888888888
Q ss_pred HHHHHHHHHHhCCCc--------c--ccchHHHH--HHhcCCCcHHHHHHHHHhH-----HHHHhhhChHHHHHhhhhhh
Q 010290 262 ANQLYELCEAVGPEP--------T--RSDVVPAY--VRLLRDNEAEVRIAAAGKV-----TKICRILNPELAIQHILPCV 324 (513)
Q Consensus 262 ~~~l~~l~~~~~~~~--------~--~~~ll~~l--~~~l~d~~~~vr~~a~~~l-----~~~~~~~~~~~~~~~l~~~l 324 (513)
+.++..+...-.... + .++.+-.+ ..++.|+- ++.-...+. ..+.+.+....+.....+..
T Consensus 253 l~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~--~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~ 330 (678)
T KOG1293|consen 253 LECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPG--LSTLDHTNVLFCILARFASKLQLPQHEEATLKTT 330 (678)
T ss_pred HHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCc--eeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhH
Confidence 888877765432111 0 01122221 22233332 222111111 11111111111111111222
Q ss_pred hhh------cCCCcHHHHHHHHHHH---HHhchhhCH---HHHH-HhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhh--
Q 010290 325 KEL------SSDSSQHVRSALATVI---MGMAPILGK---DATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-- 389 (513)
Q Consensus 325 ~~~------~~d~~~~vr~~~~~~l---~~l~~~~~~---~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~-- 389 (513)
..+ ++....+.|.-++.-. ..++...+. +.+. ......+....--.+..++.+++.++..+...+
T Consensus 331 ~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~a 410 (678)
T KOG1293|consen 331 TELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSA 410 (678)
T ss_pred HHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 111 1223344443332221 122222211 1111 122222222233345678899998888775543
Q ss_pred -hhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhCh---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 010290 390 -GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 465 (513)
Q Consensus 390 -~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~ 465 (513)
....-...+...+.+++.|+...+..+++.++..++-.+++ .+.....+..+.+.+.|+.+++|..+.+++..+.-
T Consensus 411 L~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f 490 (678)
T KOG1293|consen 411 LRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF 490 (678)
T ss_pred HHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 22222356777788888999999999999999999877654 34556789999999999999999999999999876
Q ss_pred HhChhhH----hhhhHHHHHhhhcCcch
Q 010290 466 EFGPDWA----MQHIVPQVALIKSSRNL 489 (513)
Q Consensus 466 ~~~~~~~----~~~i~~~L~~~~~~~~~ 489 (513)
...+.+. .+.-...+..+.+||++
T Consensus 491 ~~de~~k~~~~~ki~a~~i~~l~nd~d~ 518 (678)
T KOG1293|consen 491 NCDEEEKFQLLAKIPANLILDLINDPDW 518 (678)
T ss_pred cchHHHHHHHHHHhhHHHHHHHHhCCCH
Confidence 5443322 13344555667888865
No 152
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.59 E-value=0.029 Score=63.11 Aligned_cols=271 Identities=12% Similarity=0.073 Sum_probs=163.5
Q ss_pred hhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcCh-HH-----HHhh-HHHHHHHhhcCCCcchhhhHHhhhHhhcCC
Q 010290 83 YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-QD-----VVEH-FIPLVKRLAAGEWFTARVSSCGLFHVAYPS 155 (513)
Q Consensus 83 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-~~-----~~~~-~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~ 155 (513)
.|..+-+.+.....+++..++..|+..|..++..+-+ +. +... +-|+..-+.+..+..+|....+++..+...
T Consensus 1134 iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s 1213 (1780)
T PLN03076 1134 IWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLS 1213 (1780)
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 3445555566655566788999999999998876533 22 2333 445544456677789999999999887765
Q ss_pred CCHH---HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh------hhhHHHHHHHHHHhhhcc-chhHHHHHHHH
Q 010290 156 APEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA------AHLKSEIMSIFEELTQDD-QDSVRLLAVEG 225 (513)
Q Consensus 156 ~~~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~l~~d~-~~~vr~~a~~~ 225 (513)
.+.. -|+.++..|.....++++.+-+.+.+.+..+.+..-. ......++..+.++.+.. +.++-..|+..
T Consensus 1214 ~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~l 1293 (1780)
T PLN03076 1214 RVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAF 1293 (1780)
T ss_pred HHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHH
Confidence 5554 6788888888888888888888888888877654221 123344555555555432 23444444444
Q ss_pred HHHhhccC-----------------------------------Chhh---hhhhHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010290 226 CGALGKLL-----------------------------------EPQD---CVAHILPVIVNFSQDKSWRVRYMVANQLYE 267 (513)
Q Consensus 226 l~~l~~~~-----------------------------------~~~~---~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~ 267 (513)
+..++..+ +.+. ++-.++-.+..+..|+...||..+++.|=.
T Consensus 1294 L~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~ 1373 (1780)
T PLN03076 1294 LRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFD 1373 (1780)
T ss_pred HHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 44331111 0001 111244445556778999999999999988
Q ss_pred HHHHhCCCccc-------c-chHHHHHHhcC----------------------CCcHHHHHHHHHhHHHHHhhhCh----
Q 010290 268 LCEAVGPEPTR-------S-DVVPAYVRLLR----------------------DNEAEVRIAAAGKVTKICRILNP---- 313 (513)
Q Consensus 268 l~~~~~~~~~~-------~-~ll~~l~~~l~----------------------d~~~~vr~~a~~~l~~~~~~~~~---- 313 (513)
+....|..+.. . -+.|.+..+-. +....+...+..+|..++..+..
T Consensus 1374 iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~ 1453 (1780)
T PLN03076 1374 TLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPT 1453 (1780)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887776531 2 24444432110 01112344555555554443321
Q ss_pred -HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHH
Q 010290 314 -ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD 353 (513)
Q Consensus 314 -~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~ 353 (513)
....+.++..+..++..++..+-.....++..+....|..
T Consensus 1454 L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~ 1494 (1780)
T PLN03076 1454 VNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHL 1494 (1780)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhcc
Confidence 1244555666666777778888777888888877665543
No 153
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=97.51 E-value=0.033 Score=57.71 Aligned_cols=187 Identities=14% Similarity=0.104 Sum_probs=94.1
Q ss_pred chHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccC--ChhhhhhhHHHHHHHhcCCC
Q 010290 176 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL--EPQDCVAHILPVIVNFSQDK 253 (513)
Q Consensus 176 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~~~d~ 253 (513)
....|....+++...+. ......+.. ++....-. -..+...+..+.... +.......+.+.+..-....
T Consensus 377 ~~~~r~~~lDal~~aGT----~~av~~i~~----~I~~~~~~-~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~ 447 (618)
T PF01347_consen 377 KEQARKIFLDALPQAGT----NPAVKFIKD----LIKSKKLT-DDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKN 447 (618)
T ss_dssp -HHHHHHHHHHHHHH-S----HHHHHHHHH----HHHTT-S--HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT
T ss_pred HHHHHHHHHHHHHHcCC----HHHHHHHHH----HHHcCCCC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccC
Confidence 56677777777776554 233333333 33321111 112334444443332 22233333333333222234
Q ss_pred CHHHHHHHHHHHHHHHHHhCCC------------ccccchHHHHHHhc----CCCcHHHHHHHHHhHHHHHhhhChHHHH
Q 010290 254 SWRVRYMVANQLYELCEAVGPE------------PTRSDVVPAYVRLL----RDNEAEVRIAAAGKVTKICRILNPELAI 317 (513)
Q Consensus 254 ~~~vr~~~~~~l~~l~~~~~~~------------~~~~~ll~~l~~~l----~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 317 (513)
++.++.+++-+++.+....... ...+++++.+...+ +..+.+-+..++++||.+..
T Consensus 448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-------- 519 (618)
T PF01347_consen 448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-------- 519 (618)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---------
T ss_pred ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--------
Confidence 5678999999999988754332 12234555554444 35566778888888888742
Q ss_pred HhhhhhhhhhcCCC---cHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCC--CChHHHHHHHHHHHH
Q 010290 318 QHILPCVKELSSDS---SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQ 384 (513)
Q Consensus 318 ~~l~~~l~~~~~d~---~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~ 384 (513)
...++.+...+.+. ...+|.+|+.++..++.... +.+.+.+.+.+.| ++.+||.+|...|-.
T Consensus 520 ~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~-----~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 520 PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP-----EKVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H-----HHHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc-----HHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 23444444444443 67888888888887754432 2334444444433 357788888766554
No 154
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=97.48 E-value=0.012 Score=60.26 Aligned_cols=163 Identities=17% Similarity=0.181 Sum_probs=89.3
Q ss_pred HHHHHHHHcCC----CchHHHHHHHHhHHHHHHHhhh------hhhHHHHHHHHHHhh----hccchhHHHHHHHHHHHh
Q 010290 164 LRTIYRQLCQD----DMPMVRRSAATNLGKFAATVEA------AHLKSEIMSIFEELT----QDDQDSVRLLAVEGCGAL 229 (513)
Q Consensus 164 l~~~l~~l~~d----~~~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~l~----~d~~~~vr~~a~~~l~~l 229 (513)
++..+..++++ +++.+|..+.-+++.++...-. ......+.|.+.+.+ ++.+...+...+++||++
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 44445555554 3678999999999988863311 112344555554433 344556677788888877
Q ss_pred hccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC--CCcHHHHHHHHHhHHHH
Q 010290 230 GKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLR--DNEAEVRIAAAGKVTKI 307 (513)
Q Consensus 230 ~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~--d~~~~vr~~a~~~l~~~ 307 (513)
+.. .....+.|.+. .-.+.+..+|..++.+|..++...+. .+.+.++..+. +.+++||.+|+..+-..
T Consensus 474 g~~----~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~-----~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 474 GHP----SSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPR-----KVQEVLLPIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred CCh----hHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 742 11222333332 12234677899999999888764332 23344444333 34578998887665543
Q ss_pred HhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHH
Q 010290 308 CRILNPELAIQHILPCVKELSSDSSQHVRSALATV 342 (513)
Q Consensus 308 ~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~ 342 (513)
- ++....+.+. ..+-.+++..|+..+...
T Consensus 544 ~---P~~~~l~~ia---~~l~~E~~~QV~sfv~S~ 572 (574)
T smart00638 544 K---PSVALLQRIA---ELLNKEPNLQVASFVYSH 572 (574)
T ss_pred C---CCHHHHHHHH---HHHhhcCcHHHHHHhHHh
Confidence 1 2212222221 223346677776655443
No 155
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.47 E-value=0.018 Score=54.53 Aligned_cols=119 Identities=16% Similarity=0.158 Sum_probs=83.3
Q ss_pred ChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhc------CCChhHHHHHHHHHHHHHHHhC---------------
Q 010290 371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQLG--------------- 429 (513)
Q Consensus 371 ~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~------~~~~~vR~~~~~~l~~l~~~~~--------------- 429 (513)
....|.+|+..+..+++..+.... +.+...+..+++ ..+|+-+.+|+..++.++....
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v~-~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQVT-SILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred cCCcHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 356788999999999887765432 344444444443 4589999999999999986542
Q ss_pred hhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhhcCcchHHH
Q 010290 430 VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKSSRNLVLN 492 (513)
Q Consensus 430 ~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~~~~~~~r 492 (513)
.++|..++.|-+. --.+..|-+|-.|++.+..+...+.++ ....++|.+..++.+++++.+
T Consensus 303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~-~l~~~~~~l~~~L~~~~~vv~ 363 (370)
T PF08506_consen 303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE-QLLQIFPLLVNHLQSSSYVVH 363 (370)
T ss_dssp HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-HHHHHHHHHHHHTTSS-HHHH
T ss_pred HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCCcchh
Confidence 1245667777766 334667889999999999988887765 346799999999999999877
No 156
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=97.45 E-value=0.027 Score=58.41 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=92.6
Q ss_pred cchhHHHHHHHHHHHhhccCChh----------------hhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc
Q 010290 214 DQDSVRLLAVEGCGALGKLLEPQ----------------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT 277 (513)
Q Consensus 214 ~~~~vr~~a~~~l~~l~~~~~~~----------------~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 277 (513)
.++.++..|+-+++.+...+... .+.+.+...+....+..+...+..++++||++.
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g-------- 518 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG-------- 518 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC--------
Confidence 45667888887777776542111 223334444444455667778899999999986
Q ss_pred ccchHHHHHHhcCCC---cHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHH
Q 010290 278 RSDVVPAYVRLLRDN---EAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA 354 (513)
Q Consensus 278 ~~~ll~~l~~~l~d~---~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 354 (513)
.+..++.+...+.+. ...+|.+|+.+|..+... .++...+.++|.+.+- ..+..+|.+|...+-..-+
T Consensus 519 ~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~-~~~~v~~~l~~I~~n~--~e~~EvRiaA~~~lm~~~P------ 589 (618)
T PF01347_consen 519 HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH-CPEKVREILLPIFMNT--TEDPEVRIAAYLILMRCNP------ 589 (618)
T ss_dssp -GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH-T--TS-HHHHHHHHHHHHHT--------
T ss_pred CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc-CcHHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCC------
Confidence 356888888888776 689999999999987543 3445556666665444 2356799999887655421
Q ss_pred HHHhHHHHHHHhc-CCCChHHHHHHHHHH
Q 010290 355 TIEQLLPIFLSLL-KDEFPDVRLNIISKL 382 (513)
Q Consensus 355 ~~~~l~~~l~~~l-~d~~~~vr~~a~~~l 382 (513)
....+..+...+ .+++..|+..+.+.|
T Consensus 590 -~~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 590 -SPSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp --HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 122334444444 567788887776654
No 157
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=97.44 E-value=0.073 Score=52.59 Aligned_cols=434 Identities=14% Similarity=0.134 Sum_probs=196.8
Q ss_pred HHHHhcCccHHHHHHHhhcHHHHHHHhChHhh--hhhhhhhh---------hh---ccCCchHHHHHHHHHhhccccccc
Q 010290 14 LIDELKNDDIQLRLNSIRRLSTIARALGEERT--RKELIPFL---------SE---NNDDDDEVLLAMAEELGVFIPYVG 79 (513)
Q Consensus 14 l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~--~~~l~~~l---------~~---~~~~~~~vr~~~~~~l~~~~~~~~ 79 (513)
+.+...|.+..+|.++++.++.+.+.++.... .-+++.+. .+ ..+.++-+...+...++ ++.. +
T Consensus 251 ~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~-~ 328 (993)
T COG5234 251 LLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGA-G 328 (993)
T ss_pred HHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhc-c
Confidence 33445677889999999999999888874311 11233222 22 22455666666655555 4442 2
Q ss_pred Cchhhh-hhhHHHHHhhc--------cchhHHHHHHHHHHHHHHhhcCh---HHHHhhHHHHHHH-hhcCCCcchhhhHH
Q 010290 80 GLEYAN-VLLPPLETLCT--------VEETCVRDKAVESLCRIGSQMRE---QDVVEHFIPLVKR-LAAGEWFTARVSSC 146 (513)
Q Consensus 80 ~~~~~~-~l~~~l~~l~~--------~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~-l~~d~~~~~R~~~~ 146 (513)
+-+..+ .+.|++..-++ .+...+|+.++-.+..+....+. +.....+.-++.+ ..=|++-.+|++++
T Consensus 329 ~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~ 408 (993)
T COG5234 329 LIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAAT 408 (993)
T ss_pred ccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHH
Confidence 222222 24555544332 22346788777766666554332 2233444444443 66788889999888
Q ss_pred hhhHhhcCC-CCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHH----HHHHHHHHhhhccchhHHHH
Q 010290 147 GLFHVAYPS-APEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKS----EIMSIFEELTQDDQDSVRLL 221 (513)
Q Consensus 147 ~~l~~~~~~-~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~----~l~~~l~~l~~d~~~~vr~~ 221 (513)
.++-..... .+...-.+++..+ +-. .|.+ ...+-+.++..+.+..-.. .+-+.+.+-+.+-+..++..
T Consensus 409 Aal~E~iGR~~s~a~g~~lIslI----N~~--sv~r-~s~csg~~~r~~~~~~k~~~CedVF~diLl~Nl~H~~~~~k~~ 481 (993)
T COG5234 409 AALFEVIGRHASIADGLSLISLI----NYV--SVTR-ISNCSGDLCRKVAHFPKFRSCEDVFQDILLTNLQHWDVKVKQL 481 (993)
T ss_pred HHHHHHhccCCCcccchhhhhhc----cce--ecch-hhhcchHHHHHhcCccccchHHHHHHHHHHhhhhccchhhhhh
Confidence 777655443 4333222233322 111 1111 3333344443332111001 11112333344455667777
Q ss_pred HHHHHHHhhccCChhhhhhhHHHHH-HHhcCCC--CHHHHHHHHHHH---------HHHHHHhCCCccccchHHHHHHhc
Q 010290 222 AVEGCGALGKLLEPQDCVAHILPVI-VNFSQDK--SWRVRYMVANQL---------YELCEAVGPEPTRSDVVPAYVRLL 289 (513)
Q Consensus 222 a~~~l~~l~~~~~~~~~~~~l~~~l-~~~~~d~--~~~vr~~~~~~l---------~~l~~~~~~~~~~~~ll~~l~~~l 289 (513)
...++..+.+.-.. .+..+|.+ .+...|- +..+-...++.+ ++++...-.....-.+.+.+.+..
T Consensus 482 ~~y~l~~liK~~~~---~p~yl~~Il~k~~sdfi~~~~il~~~~k~F~~~~~~~rihei~~~i~q~kIkl~i~~~~~r~f 558 (993)
T COG5234 482 SAYSLRQLIKYPKE---LPIYLPPILDKLSSDFIFGYTILASIIKGFLFPFDINRIHEILSHIQQTKIKLGILKGIQRIF 558 (993)
T ss_pred ccccHHHHhcCccc---CchhhhHHhhhCchhhhcchhhHHHHHHHhcCccCCccHHHHHHHHHHhheeecCChHHHHHh
Confidence 77777777543111 22222222 2222221 111111111111 111111000111224667777777
Q ss_pred CCCcHHHHHHHHHhHHHHHhhhC--hHHHHHhhhhhh--------------------hhhcCCCcHHHHHHHHHHHHHhc
Q 010290 290 RDNEAEVRIAAAGKVTKICRILN--PELAIQHILPCV--------------------KELSSDSSQHVRSALATVIMGMA 347 (513)
Q Consensus 290 ~d~~~~vr~~a~~~l~~~~~~~~--~~~~~~~l~~~l--------------------~~~~~d~~~~vr~~~~~~l~~l~ 347 (513)
.|+.+--|.-+..+++.+....+ .+.+.+.+.|.. .++-.....++-....+....+.
T Consensus 559 ~d~~~~f~~F~~~~~~vi~g~~D~~~e~~idiVs~~~~~ll~~~~~p~~~~~~~~~~v~~~~~~~ariv~si~~~t~sli 638 (993)
T COG5234 559 ADDIRVFRAFFSEAFSVIIGAIDLQEETIIDIVSDAYSVLLKFDDMPETLEVLLDYIVKCSTSKEARIVYSILQNTPSLI 638 (993)
T ss_pred cccchHHHHHHHHHHHHHhhhhhhhHhhHHHHhcchHHhhhhccccHHHHHHHHHHHHhccchhHHHHHHHHhccCchhh
Confidence 77776556555556665543221 111111111111 11111111111111111111111
Q ss_pred hhhC-HHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHH--hhhhhhhhhhhhhHHHHHHHhhcCC----ChhHHHHHHHH
Q 010290 348 PILG-KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ--VNQVIGIDLLSQSLLPAIVELAEDR----HWRVRLAIIEY 420 (513)
Q Consensus 348 ~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~--i~~~~~~~~~~~~l~~~l~~l~~~~----~~~vR~~~~~~ 420 (513)
-.+. .+..-+.++..+..+..-+...--.++...... +-..-..+.+.+.++..+.+...|. ...+|..|+.+
T Consensus 639 ~~~~~qek~c~l~~~~yp~L~~~~~s~~I~~~~h~~V~~t~~~S~sie~fr~~iln~l~nY~~d~rGDVgs~iR~~a~kl 718 (993)
T COG5234 639 ISFRYQEKICKLLLDIYPQLHSIDYSAPIANALHNIVPFTYEKSESIEEFRKEILNVLSNYLTDTRGDVGSWIRKPAMKL 718 (993)
T ss_pred hcCccHHHHHHHHHHhhhhhcccccccchhhhhhcchhhhccccccHHHHHHHHHHHHhhhccccccchhHHHHHHHHHH
Confidence 1111 111112233333333321111111111111111 1111123446677888887777654 35589889888
Q ss_pred HHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 010290 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA 464 (513)
Q Consensus 421 l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~ 464 (513)
++.+... .. ...-+.+.+.+-|+.+.+|.-|.++...|.
T Consensus 719 m~SfL~k--D~---~~~~~y~iR~~~dki~~lR~l~yqa~eqI~ 757 (993)
T COG5234 719 MSSFLVK--DS---SGKKLYIIRQTFDKIDSLRGLAYQALEQIR 757 (993)
T ss_pred HHHHhhc--cc---cCCchhHHHHhhcccHHHHhhhhhhhhhee
Confidence 8776532 11 112367888999999999988888776654
No 158
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.42 E-value=0.018 Score=54.44 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=34.1
Q ss_pred HHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhc------CCCcHHHHHHHHHHHHHhchhh
Q 010290 294 AEVRIAAAGKVTKICRILNPELAIQHILPCVKELS------SDSSQHVRSALATVIMGMAPIL 350 (513)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~------~d~~~~vr~~~~~~l~~l~~~~ 350 (513)
..-|.+|...+..+++..+.. ..+.+...+...+ ...+|+-+.+|+..++.++...
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~-v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~ 286 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQ-VTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKG 286 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS
T ss_pred CCcHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhh
Confidence 456778888888888765432 1122223333322 2467899999999998887543
No 159
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.40 E-value=0.012 Score=60.55 Aligned_cols=212 Identities=15% Similarity=0.086 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHHhCCC----ccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhC---hHHHHHhhhhhhhhhcCC
Q 010290 258 RYMVANQLYELCEAVGPE----PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN---PELAIQHILPCVKELSSD 330 (513)
Q Consensus 258 r~~~~~~l~~l~~~~~~~----~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~~~d 330 (513)
|.-++..|+++... |.= ...--|.|..+++|+.+-.+.|..-+--+..+...-. .+.+.+..-.++.+.+.+
T Consensus 487 RlRAL~LL~RFLDl-GpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 487 RLRALVLLARFLDL-GPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHhcc-chhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 44455556665431 220 0112589999999999999999888777777765321 122222222334444444
Q ss_pred ---CcHHHHHHHHHHHHHhchhhCH---HHHHHhHHHHHHHhcCCC-ChHHHHHHHHHHHHhhhhhhhhh---hhhhHHH
Q 010290 331 ---SSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDL---LSQSLLP 400 (513)
Q Consensus 331 ---~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~i~~~~~~~~---~~~~l~~ 400 (513)
-++..|..++..|..+...+.. ..+...++.+++..++|+ .+-.|+-++-+||.+-+.+.... .....-.
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahe 645 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHE 645 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHH
Confidence 2357888888888888876532 233467888999999995 78999999999999987654322 2245667
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHHHh----Chhh--H------------HHHHHH----HHHHHhcCchhHHHHHHHH
Q 010290 401 AIVELAEDRHWRVRLAIIEYIPLLASQL----GVGF--F------------DDKLGA----LCMQWLKDKVYSIRDAAAN 458 (513)
Q Consensus 401 ~l~~l~~~~~~~vR~~~~~~l~~l~~~~----~~~~--~------------~~~~~~----~l~~~l~d~~~~VR~~a~~ 458 (513)
.+..++.|+-.+||.+|+.+++.+.... .+.. . .++.++ .++.+++|.++-||.+.+-
T Consensus 646 kL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v 725 (1387)
T KOG1517|consen 646 KLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVV 725 (1387)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHH
Confidence 7888889999999999999999998863 1110 0 122333 5677899999999999999
Q ss_pred HHHHHHHHhChh
Q 010290 459 NVKRLAEEFGPD 470 (513)
Q Consensus 459 ~l~~l~~~~~~~ 470 (513)
++..+.......
T Consensus 726 ~ls~~~~g~~~~ 737 (1387)
T KOG1517|consen 726 ALSHFVVGYVSH 737 (1387)
T ss_pred HHHHHHHhhHHH
Confidence 999988765544
No 160
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=97.39 E-value=0.039 Score=48.86 Aligned_cols=193 Identities=11% Similarity=0.091 Sum_probs=111.4
Q ss_pred hhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHH---
Q 010290 94 LCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQ--- 170 (513)
Q Consensus 94 l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~--- 170 (513)
+.+..++......+++|..++.+-. .....++..+..+.+.+....+..+.+++..+++.-+..+ +.+-+.+..
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~ 85 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLIL 85 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHh
Confidence 5566677777777777777776542 3334455566666666655556666777777766554432 222222222
Q ss_pred ------HcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhh-hccchhHHHHHHHHHHHhhccCChhhhhhhHH
Q 010290 171 ------LCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELT-QDDQDSVRLLAVEGCGALGKLLEPQDCVAHIL 243 (513)
Q Consensus 171 ------l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 243 (513)
.-.+..++...+.+.++..++...+. ....+++.+...+ .+.++.++..+++++..+++.---+ .....
T Consensus 86 r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd--~~s~w 161 (234)
T PF12530_consen 86 RIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVD--FYSAW 161 (234)
T ss_pred hcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcc--HHHHH
Confidence 11244677777778888889887664 6677888888888 7888899999999999988431100 01122
Q ss_pred HHHHH-hcCCCCHHHHHHHHHHHHHHHHHhC-CC---ccccchHHHHHHhcCCCc
Q 010290 244 PVIVN-FSQDKSWRVRYMVANQLYELCEAVG-PE---PTRSDVVPAYVRLLRDNE 293 (513)
Q Consensus 244 ~~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~-~~---~~~~~ll~~l~~~l~d~~ 293 (513)
..+.. +-.+..+.+-...++.+.-+...-- .+ ....+++..+.+.....+
T Consensus 162 ~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 162 KVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 22332 2334455555444444333322111 11 122456666666666655
No 161
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.33 E-value=0.012 Score=54.46 Aligned_cols=157 Identities=16% Similarity=0.199 Sum_probs=98.3
Q ss_pred HHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHH----------
Q 010290 286 VRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT---------- 355 (513)
Q Consensus 286 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---------- 355 (513)
...++..++.||..|++++|-++-. +.+ .....++.+...++..+..+|..+++++..+.-..|...+
T Consensus 33 ~P~v~~~~~~vR~~al~cLGl~~Ll-d~~-~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~ 110 (298)
T PF12719_consen 33 LPAVQSSDPAVRELALKCLGLCCLL-DKE-LAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESV 110 (298)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHh-ChH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccc
Confidence 3556777778888888888776643 332 2234445555555555777888888887777666654332
Q ss_pred -HHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhh--hhhhhhhhhHHHHHHHhhcC----CChhHHHHHHHHHHHHHHHh
Q 010290 356 -IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV--IGIDLLSQSLLPAIVELAED----RHWRVRLAIIEYIPLLASQL 428 (513)
Q Consensus 356 -~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~--~~~~~~~~~l~~~l~~l~~~----~~~~vR~~~~~~l~~l~~~~ 428 (513)
...+...+.+.+.+.++++|..+++.+.++.-. +.. .+.++..+.-..-+ .+.+.|+..-.++...+..-
T Consensus 111 ~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~ 187 (298)
T PF12719_consen 111 DSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSS 187 (298)
T ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCC
Confidence 246788899999999999999999999997543 222 13344444433333 35677777766666665432
Q ss_pred C--hhhHHHHHHHHHHHHhcC
Q 010290 429 G--VGFFDDKLGALCMQWLKD 447 (513)
Q Consensus 429 ~--~~~~~~~~~~~l~~~l~d 447 (513)
. .+.+.+.++|.+..+.+.
T Consensus 188 ~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 188 PENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 2 123445567777666543
No 162
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.42 Score=53.14 Aligned_cols=230 Identities=12% Similarity=0.099 Sum_probs=146.6
Q ss_pred HhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhhHH-HHHhhccchhHHHHHHHHHHHHHHhh
Q 010290 39 ALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPP-LETLCTVEETCVRDKAVESLCRIGSQ 116 (513)
Q Consensus 39 ~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~-l~~l~~~~~~~vR~~a~~~l~~l~~~ 116 (513)
.+||+..+.--+.++.+ +...+|..|.+++..++.++...+...+...+... +..+....++..|..-.-+++.+-++
T Consensus 867 ~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhky 946 (2067)
T KOG1822|consen 867 SLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKY 946 (2067)
T ss_pred ccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHh
Confidence 34555554444455555 66788999999999999999988877766666554 45666667777777767777777766
Q ss_pred cCh---HHHHhhHHHHHHHhhcCCC-cchhhhHHhhhHhhcCCCCHHH---HHHHHHHHHHH-cCCC--chHHHHHHHHh
Q 010290 117 MRE---QDVVEHFIPLVKRLAAGEW-FTARVSSCGLFHVAYPSAPEAL---KTELRTIYRQL-CQDD--MPMVRRSAATN 186 (513)
Q Consensus 117 ~~~---~~~~~~~~~~l~~l~~d~~-~~~R~~~~~~l~~~~~~~~~~~---~~~l~~~l~~l-~~d~--~~~vr~~a~~~ 186 (513)
.+. .+....-+..+..+..|.. +.++..+...+..+.+..++-+ ....+.....+ +.++ ..+|+...-++
T Consensus 947 vgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~ 1026 (2067)
T KOG1822|consen 947 VGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRC 1026 (2067)
T ss_pred ccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccc
Confidence 543 4444444556677776655 5888888888888877766652 23333333443 3444 45566666666
Q ss_pred HH------HHHHHhhhhhh-----------HHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHh
Q 010290 187 LG------KFAATVEAAHL-----------KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNF 249 (513)
Q Consensus 187 l~------~l~~~~~~~~~-----------~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 249 (513)
+. ++...+|++.- ....+-...-++.+++..+...++.++..+.-+.+.....+.+++.+..+
T Consensus 1027 ~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~ 1106 (2067)
T KOG1822|consen 1027 FNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSL 1106 (2067)
T ss_pred cccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHH
Confidence 65 66666665321 11111112223456688899999999999888877765566678877776
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 010290 250 SQDKSWRVRYMVANQLYEL 268 (513)
Q Consensus 250 ~~d~~~~vr~~~~~~l~~l 268 (513)
+....--.|.+...++..+
T Consensus 1107 l~s~~~i~r~~~~~clrql 1125 (2067)
T KOG1822|consen 1107 LSSSYLILRRASFSCLRQL 1125 (2067)
T ss_pred hcchhhhhhhhHHhhhhHH
Confidence 6655544555444444333
No 163
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.019 Score=51.04 Aligned_cols=174 Identities=15% Similarity=0.133 Sum_probs=92.9
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH--HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHh
Q 010290 281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ 358 (513)
Q Consensus 281 ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 358 (513)
.+...+..|.+.+|+....++..+.+++.+.... .....++..+.+-+.+....|-.++|.+++.+...++..... .
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-~ 167 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-E 167 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3444445556666666666666666666543211 222334444555556666677777777777766655543322 2
Q ss_pred HHHHHHHhc---CCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChh----
Q 010290 359 LLPIFLSLL---KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---- 431 (513)
Q Consensus 359 l~~~l~~~l---~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~---- 431 (513)
+-..+..++ .+++.-||..|-.+|..+.....+. .+++.+...+.+.+.++|..++.++......+|-.
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~----~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~ 243 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ----KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLL 243 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH----HHHHHHHHHHhhhchhhhhhhhccccccceeccccchhh
Confidence 222222222 2334557777777777777665543 34444555556667777777776666665555421
Q ss_pred hHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010290 432 FFDDKLGALCMQWLKDKVYSIRDAAANN 459 (513)
Q Consensus 432 ~~~~~~~~~l~~~l~d~~~~VR~~a~~~ 459 (513)
.+.....+.+-.-+.|.-+.+|.+|--.
T Consensus 244 ~~~~dl~~a~~~~~~d~Lp~~~~~a~~~ 271 (334)
T KOG2933|consen 244 QGSCDLSRAAQEQGSDKLPELREAARFV 271 (334)
T ss_pred HhHHHHHHHHHhhhcccccccccchhHH
Confidence 1222334444444555555555444333
No 164
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=97.22 E-value=0.041 Score=56.40 Aligned_cols=158 Identities=15% Similarity=0.110 Sum_probs=91.5
Q ss_pred HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCH------HHHHHhHHHHHHHh----cCCCChHHHHHHHHHHHH
Q 010290 315 LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK------DATIEQLLPIFLSL----LKDEFPDVRLNIISKLDQ 384 (513)
Q Consensus 315 ~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~~----l~d~~~~vr~~a~~~l~~ 384 (513)
...+.+.+.+..-...++..+|.+++-+++.+...... ....+.+.+.+... .++.+...+..++.+||+
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 33344444332222234567888888888887753221 11223445554444 445667778888899998
Q ss_pred hhhhhhhhhhhhhHHHHHHHhhc---CCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcC--chhHHHHHHHHH
Q 010290 385 VNQVIGIDLLSQSLLPAIVELAE---DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD--KVYSIRDAAANN 459 (513)
Q Consensus 385 i~~~~~~~~~~~~l~~~l~~l~~---~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d--~~~~VR~~a~~~ 459 (513)
+.. ...++.+...+. +.+..+|.+|+.++..++..... .+.+.++..+.| ..++||.+|+..
T Consensus 473 ~g~--------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~-----~v~~~l~~i~~n~~e~~EvRiaA~~~ 539 (574)
T smart00638 473 AGH--------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR-----KVQEVLLPIYLNRAEPPEVRMAAVLV 539 (574)
T ss_pred cCC--------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 755 233344444333 33568999999999988765443 245555555543 567899999888
Q ss_pred HHHHHHHhChhhHhhhhHHHHHh-hhcCcchHHH
Q 010290 460 VKRLAEEFGPDWAMQHIVPQVAL-IKSSRNLVLN 492 (513)
Q Consensus 460 l~~l~~~~~~~~~~~~i~~~L~~-~~~~~~~~~r 492 (513)
+-.- - |. ..++..+.. +..+++.+.+
T Consensus 540 lm~t---~-P~---~~~l~~ia~~l~~E~~~QV~ 566 (574)
T smart00638 540 LMET---K-PS---VALLQRIAELLNKEPNLQVA 566 (574)
T ss_pred HHhc---C-CC---HHHHHHHHHHHhhcCcHHHH
Confidence 5442 1 22 223444444 3455666665
No 165
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.20 E-value=0.28 Score=48.69 Aligned_cols=107 Identities=16% Similarity=0.079 Sum_probs=84.1
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhh--------hhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChh
Q 010290 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--------LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431 (513)
Q Consensus 360 ~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~--------~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~ 431 (513)
+..+.++|.++..-.|.+.++..+.++..+..+. -.+.++..+.+-+.|.++-+|..|++.+..+...-...
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 4567788888999999999999999877653322 12467777888889999999999999999887653221
Q ss_pred h-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 010290 432 F-FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (513)
Q Consensus 432 ~-~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~ 466 (513)
. -...+.....+.+.|++..||..|++.+..+.-.
T Consensus 381 ~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 381 VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 1 1345888899999999999999999999887753
No 166
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.4 Score=49.62 Aligned_cols=114 Identities=14% Similarity=0.122 Sum_probs=83.3
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChh--hH---HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh
Q 010290 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FF---DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 470 (513)
Q Consensus 396 ~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~--~~---~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 470 (513)
..++.....++.+++-++|..++.++..-...+... .+ ..+..|.++..+.++++-+-+.|++++..++...|.-
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF 881 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF 881 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence 466677778899999999999999987655543322 11 2357888888999999999999999999999987742
Q ss_pred ---hHhhhhHHHHHhhhcCcc--------hHHH----HHHHHHHHhcccceeehh
Q 010290 471 ---WAMQHIVPQVALIKSSRN--------LVLN----SVLSLLKNAGIDAVFYME 510 (513)
Q Consensus 471 ---~~~~~i~~~L~~~~~~~~--------~~~r----~~~~~~~~i~~~~~~~~~ 510 (513)
.+.+.++|.+..++.+-. +.++ ..+++++..+ ++++|++
T Consensus 882 v~sR~l~dvlP~l~~~~~~~~~~~~~~~~~~qta~yKlq~k~i~~~~-~~v~~l~ 935 (1014)
T KOG4524|consen 882 VASRFLEDVLPWLKHLCQDSFARTILKELRIQTAEYKLQLKSISKLV-KFVPYLE 935 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC-Ccceeee
Confidence 224888999988776642 3333 3356666666 7888864
No 167
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=97.12 E-value=0.27 Score=47.02 Aligned_cols=267 Identities=12% Similarity=0.119 Sum_probs=120.2
Q ss_pred hcCccHHHHHHHhhcHHHHHHHhChH-------hhhhhhhhhhhh-cc------C-CchHHHHHHHHHhhccccc-----
Q 010290 18 LKNDDIQLRLNSIRRLSTIARALGEE-------RTRKELIPFLSE-NN------D-DDDEVLLAMAEELGVFIPY----- 77 (513)
Q Consensus 18 l~~~d~~~r~~a~~~l~~i~~~~~~~-------~~~~~l~~~l~~-~~------~-~~~~vr~~~~~~l~~~~~~----- 77 (513)
|.+.|-+.|..|...|....+..... +...-+..++.. +. + .+..+-..|.++++.+...
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 55677778888877776665554321 112233444443 22 2 2556777778888765532
Q ss_pred -ccCchhhhhhh-HHHHHhhcc-chhHHHHHHHHHHHHHHhhcChH----HHHhhHHHHHHHhhc-CCCcchhhhHHhhh
Q 010290 78 -VGGLEYANVLL-PPLETLCTV-EETCVRDKAVESLCRIGSQMREQ----DVVEHFIPLVKRLAA-GEWFTARVSSCGLF 149 (513)
Q Consensus 78 -~~~~~~~~~l~-~~l~~l~~~-~~~~vR~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~l~~-d~~~~~R~~~~~~l 149 (513)
+.. +....++ ..+..+... .+..+....+.++.. ..+++. ...+.++..+..+.+ =++..+-.....++
T Consensus 82 ~l~~-d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~ 158 (372)
T PF12231_consen 82 TLSD-DFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIY 158 (372)
T ss_pred hCCh-HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHH
Confidence 221 1122122 222222211 122232222222221 112222 222223333333322 22233333344444
Q ss_pred HhhcCCCCHH---HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHH-HHHhhhccchhHHHHHHHH
Q 010290 150 HVAYPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSI-FEELTQDDQDSVRLLAVEG 225 (513)
Q Consensus 150 ~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~-l~~l~~d~~~~vr~~a~~~ 225 (513)
..+....+.. .....++.+...+-+....+|..+...+......++++......+.. +...+.+
T Consensus 159 ~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~------------ 226 (372)
T PF12231_consen 159 KRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLEN------------ 226 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcccccc------------
Confidence 4444444444 22334455555555556667766655555555555543322221111 1111111
Q ss_pred HHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC-----ccccchHHHHHHhcCCCcHHHHHHH
Q 010290 226 CGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-----PTRSDVVPAYVRLLRDNEAEVRIAA 300 (513)
Q Consensus 226 l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~-----~~~~~ll~~l~~~l~d~~~~vr~~a 300 (513)
+.+.+.+.+.+.++..+++.. ..+.+..+.+...+|.. .+..+.+.....+++++++.+|..|
T Consensus 227 ----------~~~~~~~~~~L~~mi~~~~~~--~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A 294 (372)
T PF12231_consen 227 ----------GKLIQLYCERLKEMIKSKDEY--KLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQA 294 (372)
T ss_pred ----------ccHHHHHHHHHHHHHhCcCCc--chHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHH
Confidence 112333444444444442110 11223333333333322 1235667777778888888888888
Q ss_pred HHhHHHHHhhh
Q 010290 301 AGKVTKICRIL 311 (513)
Q Consensus 301 ~~~l~~~~~~~ 311 (513)
..++..+....
T Consensus 295 ~~aW~~liy~~ 305 (372)
T PF12231_consen 295 FKAWRRLIYAS 305 (372)
T ss_pred HHHHHHHHHHh
Confidence 88888887644
No 168
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.12 E-value=0.024 Score=59.57 Aligned_cols=170 Identities=19% Similarity=0.216 Sum_probs=108.8
Q ss_pred HHHHHHhHHHHHhhhChHHH------HHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHH-HHhHHHHHHHhcCC
Q 010290 297 RIAAAGKVTKICRILNPELA------IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT-IEQLLPIFLSLLKD 369 (513)
Q Consensus 297 r~~a~~~l~~~~~~~~~~~~------~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~-~~~l~~~l~~~l~d 369 (513)
|+.|-.+|..+++.+|...+ .+.++..+.......+ .-......+..+....+.... .-..+|.+..++..
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d--~~~~s~~vf~s~~~~m~s~l~~~~~~l~~l~~~~~s 827 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGND--EFLSSFEVFNSLAPLMHSFLHPLGSLLPRLFFFVRS 827 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCc--chhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHhccc
Confidence 77888889999998887632 2222222333332221 101111112222222222111 12567888899999
Q ss_pred CChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHH-HHHHHHHHHHHHhChh--hHHHHHHHHHHHHhc
Q 010290 370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL-AIIEYIPLLASQLGVG--FFDDKLGALCMQWLK 446 (513)
Q Consensus 370 ~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~-~~~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~ 446 (513)
....+|.+++.+++.+.+....+.+ ..++..+..++++.+.-+|+ ++.+.+..+....... .+..-++|.++..++
T Consensus 828 ~~~a~r~~~ar~i~~~~k~~~~e~m-~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ms 906 (1549)
T KOG0392|consen 828 IHIAVRYAAARCIGTMFKSATRETM-ATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMS 906 (1549)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccc
Confidence 9999999999999999887655544 56667777777776655555 4455555555444332 244457899999999
Q ss_pred CchhHHHHHHHHHHHHHHHHhCh
Q 010290 447 DKVYSIRDAAANNVKRLAEEFGP 469 (513)
Q Consensus 447 d~~~~VR~~a~~~l~~l~~~~~~ 469 (513)
|....||.+|-+++..+...++-
T Consensus 907 d~~d~vR~aat~~fa~lip~~~l 929 (1549)
T KOG0392|consen 907 DQIDSVREAATKVFAKLIPLLPL 929 (1549)
T ss_pred cchHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999876653
No 169
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.10 E-value=0.93 Score=52.83 Aligned_cols=210 Identities=18% Similarity=0.164 Sum_probs=119.3
Q ss_pred HHHHhcCccHHHHHHHhhcHHHHHHHhCh------H--hhhhhhhhhhhh--ccCCchHHHHHHHHHhh-cccccccCch
Q 010290 14 LIDELKNDDIQLRLNSIRRLSTIARALGE------E--RTRKELIPFLSE--NNDDDDEVLLAMAEELG-VFIPYVGGLE 82 (513)
Q Consensus 14 l~~~l~~~d~~~r~~a~~~l~~i~~~~~~------~--~~~~~l~~~l~~--~~~~~~~vr~~~~~~l~-~~~~~~~~~~ 82 (513)
+...+..+|...|..+...+..+...... . .+.+..+..+.. ..+.++.+|......+. .+.+....
T Consensus 486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~~~laQ-- 563 (2341)
T KOG0891|consen 486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLNERFDAQLAQ-- 563 (2341)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhccchhhhhcC--
Confidence 34556778889999997777655433221 1 123444455444 56788888888777776 12221111
Q ss_pred hhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHh----hc----CCCcchhhhHHhhhHhhcC
Q 010290 83 YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRL----AA----GEWFTARVSSCGLFHVAYP 154 (513)
Q Consensus 83 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l----~~----d~~~~~R~~~~~~l~~~~~ 154 (513)
+..+-.+...+.++.-.++..+...++.++..-+ .+++|.+... .+ +....+...++..+..+..
T Consensus 564 --~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-----a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~ 636 (2341)
T KOG0891|consen 564 --PDLLRLLFIALHDENFAIQELATVIIGRLSSYNP-----AYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELII 636 (2341)
T ss_pred --chhHHHHHHHhhhhhhhhHHhHHhhccccccccH-----HHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHH
Confidence 2233334455567777788887777776666433 3344444321 11 1111111112222221111
Q ss_pred CC---CHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh--hhhHHHHHHHHHHhhhcc-chhHHHHHHHHHHH
Q 010290 155 SA---PEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGA 228 (513)
Q Consensus 155 ~~---~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~ 228 (513)
.. -..+.+.++..+...+++++..+-+++..+++.++...|. ......+++.+.+.+.|. +..-|.++..+++.
T Consensus 637 ~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~ 716 (2341)
T KOG0891|consen 637 SSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQ 716 (2341)
T ss_pred HHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhh
Confidence 11 1114455566677777888889999999999999988773 223346677766666653 45567777888887
Q ss_pred hhcc
Q 010290 229 LGKL 232 (513)
Q Consensus 229 l~~~ 232 (513)
+...
T Consensus 717 l~s~ 720 (2341)
T KOG0891|consen 717 LESS 720 (2341)
T ss_pred hhcc
Confidence 7764
No 170
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=97.08 E-value=0.36 Score=47.77 Aligned_cols=276 Identities=11% Similarity=0.031 Sum_probs=148.0
Q ss_pred HHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccC-CchHHHHHHHHHhhcccccccC--chhhhhhhHHHHHhhccc
Q 010290 23 IQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NND-DDDEVLLAMAEELGVFIPYVGG--LEYANVLLPPLETLCTVE 98 (513)
Q Consensus 23 ~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~-~~~~vr~~~~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~~~ 98 (513)
-..|..|++.+......... ....++.-.... +.. ...+.|.++.+.+...++.-.. ......++..+..--.++
T Consensus 4 l~~R~~a~~~l~~~i~~~~~-~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~ 82 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPL-SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDD 82 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCc-hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCch
Confidence 46788888888877766654 223344444444 222 3467999999999888774432 111122222222222344
Q ss_pred hhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCC---------------------------cchhhhHHhhhHh
Q 010290 99 ETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEW---------------------------FTARVSSCGLFHV 151 (513)
Q Consensus 99 ~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~---------------------------~~~R~~~~~~l~~ 151 (513)
+-.-|-.|+.+|..=++.+.. +...+.|.+......-. ...-......+..
T Consensus 83 d~~~~l~aL~~LT~~Grdi~~--~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~n 160 (464)
T PF11864_consen 83 DFDLRLEALIALTDNGRDIDF--FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVN 160 (464)
T ss_pred hHHHHHHHHHHHHcCCcCchh--cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHH
Confidence 445677777777766666632 33444444443321100 0000111122223
Q ss_pred hc----CCCCHHHHHHHHHHHHHHcCCCc-hHHHHHHHHhHHHHHHH--hhhhhhHHHHHHHHHHhhhccchhHHHHHHH
Q 010290 152 AY----PSAPEALKTELRTIYRQLCQDDM-PMVRRSAATNLGKFAAT--VEAAHLKSEIMSIFEELTQDDQDSVRLLAVE 224 (513)
Q Consensus 152 ~~----~~~~~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~ 224 (513)
++ ..++++....++..++.+|...+ ...=+.+...+..+... +++ .-...++..|....+- ......+-+
T Consensus 161 viKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~-~sl~~~i~vLCsi~~~--~~l~~~~w~ 237 (464)
T PF11864_consen 161 VIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPS-ESLSPCIEVLCSIVNS--VSLCKPSWR 237 (464)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCCh-HHHHHHHHHHhhHhcc--cccchhHHH
Confidence 32 33455677778888888765443 33335677777777652 232 2233344444443222 245556666
Q ss_pred HHHHhhccCChhhhhhhHHHHHHHhc--C----CCCHHHHHHHHHHHHHHHHHhCCCcc----cc--chHHHHHHhcCCC
Q 010290 225 GCGALGKLLEPQDCVAHILPVIVNFS--Q----DKSWRVRYMVANQLYELCEAVGPEPT----RS--DVVPAYVRLLRDN 292 (513)
Q Consensus 225 ~l~~l~~~~~~~~~~~~l~~~l~~~~--~----d~~~~vr~~~~~~l~~l~~~~~~~~~----~~--~ll~~l~~~l~d~ 292 (513)
++.+++..- .....+..+...+ . ..+..+-+.++..++.+.-..+.+.. .. .++|.+...++..
T Consensus 238 ~m~nL~~S~----~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~ 313 (464)
T PF11864_consen 238 TMRNLLKSH----LGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN 313 (464)
T ss_pred HHHHHHcCc----cHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC
Confidence 776666431 2233444444444 2 23455666888888888766543322 12 3889999999877
Q ss_pred cHHHHHHHHHhHHHHH
Q 010290 293 EAEVRIAAAGKVTKIC 308 (513)
Q Consensus 293 ~~~vr~~a~~~l~~~~ 308 (513)
++.|-...+..+..+.
T Consensus 314 ~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 314 SPRVDYEILLLINRLL 329 (464)
T ss_pred CCeehHHHHHHHHHHH
Confidence 7666555666665555
No 171
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.4 Score=48.13 Aligned_cols=429 Identities=11% Similarity=0.051 Sum_probs=219.6
Q ss_pred hhhhhhhhccCCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhcc-chhHHHHHHHHHHHH-HHhhcCh------
Q 010290 48 ELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTV-EETCVRDKAVESLCR-IGSQMRE------ 119 (513)
Q Consensus 48 ~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~~vR~~a~~~l~~-l~~~~~~------ 119 (513)
+++..+.+..|.++.+|..|-..|..+.+.-| .+..++..+..| .+..||..|+--+.+ +...++.
T Consensus 4 ellqcf~qTldada~~rt~AE~~Lk~leKqPg------Fv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i 77 (970)
T COG5656 4 ELLQCFLQTLDADAGKRTIAEAMLKDLEKQPG------FVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGI 77 (970)
T ss_pred HHHHHHHHHhccCcchhhHHHHHHHHhhcCCc------HHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCC
Confidence 34444444456666677777666666555222 233333333344 345565555444433 3322221
Q ss_pred -----HHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhc-CCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHH
Q 010290 120 -----QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAY-PSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAAT 193 (513)
Q Consensus 120 -----~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~-~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 193 (513)
...+..++.-+...+.......|.+--.++..+. +..+.+.++ +.+....++.+.+..+-..+.-++.++++.
T Consensus 78 ~~Dek~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfka 156 (970)
T COG5656 78 KADEKSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKA 156 (970)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHH
Confidence 2334445555554444444455543333333333 444555666 888889999999888888899999998876
Q ss_pred hhh---------hhhHHHHHHHHHHhhh----ccch---hHHHHHHHHHHHhhcc-CCh----hhhhhhHHHHHHHhcCC
Q 010290 194 VEA---------AHLKSEIMSIFEELTQ----DDQD---SVRLLAVEGCGALGKL-LEP----QDCVAHILPVIVNFSQD 252 (513)
Q Consensus 194 ~~~---------~~~~~~l~~~l~~l~~----d~~~---~vr~~a~~~l~~l~~~-~~~----~~~~~~l~~~l~~~~~d 252 (513)
..= ..+...+.|.+.+.-. ..+. +.-...++.....+.. +|+ .+............++-
T Consensus 157 yRwk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i~qk 236 (970)
T COG5656 157 YRWKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRILQK 236 (970)
T ss_pred HhhhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHHHcC
Confidence 421 2234456666665432 1222 2222233322222211 222 11111112222222111
Q ss_pred --------CCHH---------HHHHHHHHHHHHHHHhCCCccc----------cchHHHHHHh-cCCC------cHHHHH
Q 010290 253 --------KSWR---------VRYMVANQLYELCEAVGPEPTR----------SDVVPAYVRL-LRDN------EAEVRI 298 (513)
Q Consensus 253 --------~~~~---------vr~~~~~~l~~l~~~~~~~~~~----------~~ll~~l~~~-l~d~------~~~vr~ 298 (513)
.++. +++=+.-.+.++.+..++.... ...+|.+++- +++- .-..-.
T Consensus 237 plp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLWlsd 316 (970)
T COG5656 237 PLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLWLSD 316 (970)
T ss_pred CCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeecch
Confidence 1222 2333445556666555443211 1133333321 1111 001122
Q ss_pred HHHHhHHHHHhhhC-hH------------HHHHhhhhhhhh-------hcCCCcHHHHH-------------HHHHHHHH
Q 010290 299 AAAGKVTKICRILN-PE------------LAIQHILPCVKE-------LSSDSSQHVRS-------------ALATVIMG 345 (513)
Q Consensus 299 ~a~~~l~~~~~~~~-~~------------~~~~~l~~~l~~-------~~~d~~~~vr~-------------~~~~~l~~ 345 (513)
..+..+..+.+.+- .+ .+...++|++.. +-.|+...+|+ +++.++..
T Consensus 317 ~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal~fl~~ 396 (970)
T COG5656 317 IELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFFLII 396 (970)
T ss_pred HHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHHHHH
Confidence 33444454444321 11 122334455421 12355555554 44445444
Q ss_pred hchhhCHHHHHHhHHHHHHHhcC-----CC---ChHHHHHHHHHHHHhhhhhhh-----hhhhhhHHHHHHHhhcCCChh
Q 010290 346 MAPILGKDATIEQLLPIFLSLLK-----DE---FPDVRLNIISKLDQVNQVIGI-----DLLSQSLLPAIVELAEDRHWR 412 (513)
Q Consensus 346 l~~~~~~~~~~~~l~~~l~~~l~-----d~---~~~vr~~a~~~l~~i~~~~~~-----~~~~~~l~~~l~~l~~~~~~~ 412 (513)
+...-++.. .+.+++.+...++ +. ++--.+.|++.++.+...+.. ..+...+++.+...++++.--
T Consensus 397 ~~sKrke~T-fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygf 475 (970)
T COG5656 397 SKSKRKEET-FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGF 475 (970)
T ss_pred Hhcccchhh-hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccc
Confidence 444444433 3456777777663 22 233445677777777653322 224456777777777888888
Q ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh-HhhhhHHHHHhhh
Q 010290 413 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW-AMQHIVPQVALIK 484 (513)
Q Consensus 413 vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~-~~~~i~~~L~~~~ 484 (513)
.|..+|+.++.+...+.......++......++.+.+-.|+..|+-++.-+......+. +.+.+-+.+.+++
T Consensus 476 L~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLL 548 (970)
T COG5656 476 LKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLL 548 (970)
T ss_pred hHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHH
Confidence 99999999999966666555556688888899999999999999999988776543322 2244444444433
No 172
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.43 Score=48.31 Aligned_cols=170 Identities=16% Similarity=0.185 Sum_probs=107.8
Q ss_pred HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCC-ChHHHHHHHHHHHHhhhhh--hh
Q 010290 315 LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVI--GI 391 (513)
Q Consensus 315 ~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~i~~~~--~~ 391 (513)
++.+.++|-+. ...+...-+|+.++..++.-...--+......+-..+.+++.|. +..||.+++.++..++... ..
T Consensus 484 Wl~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~ 562 (978)
T KOG1993|consen 484 WLQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSE 562 (978)
T ss_pred HHHHhhCHHhh-hcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCCh
Confidence 55666777665 22334456799999999887754333444455666778899997 7889999999999887632 22
Q ss_pred hhhh---hhHHHHHHHhhc-CCChhHHHHHHHHHHHHHHHhChhh--HHHH---HHHHHHHHhcCchhHHHHHHHHHHHH
Q 010290 392 DLLS---QSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGF--FDDK---LGALCMQWLKDKVYSIRDAAANNVKR 462 (513)
Q Consensus 392 ~~~~---~~l~~~l~~l~~-~~~~~vR~~~~~~l~~l~~~~~~~~--~~~~---~~~~l~~~l~d~~~~VR~~a~~~l~~ 462 (513)
+.+. +.+...+..++. -+..+.|...+..++.+....++.. +... ++|.+.+-- ..++-.|.+.+.++..
T Consensus 563 dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s-~~e~lLr~alL~~L~~ 641 (978)
T KOG1993|consen 563 DSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEES-EEEPLLRCALLATLRN 641 (978)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh-ccCcHHHHHHHHHHHH
Confidence 2221 222222333333 2356678888999998887765532 2222 333333333 4678899999999999
Q ss_pred HHHHhChhhH--hhhhHHHHHhhhcCc
Q 010290 463 LAEEFGPDWA--MQHIVPQVALIKSSR 487 (513)
Q Consensus 463 l~~~~~~~~~--~~~i~~~L~~~~~~~ 487 (513)
+...+|..-. ...+.|.+ ++..|+
T Consensus 642 lV~alg~qS~~~~~fL~pVI-el~~D~ 667 (978)
T KOG1993|consen 642 LVNALGAQSFEFYPFLYPVI-ELSTDP 667 (978)
T ss_pred HHHHhccCCccchHHHHHHH-HHhcCC
Confidence 9999997532 34555554 444444
No 173
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.02 E-value=0.05 Score=57.36 Aligned_cols=174 Identities=17% Similarity=0.105 Sum_probs=107.9
Q ss_pred cHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHH--HHHHhHHHHHHHhcCCC
Q 010290 293 EAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDE 370 (513)
Q Consensus 293 ~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~ 370 (513)
...||++++++|+.+.+......+ ...+.++.+++..++|++|..-+..+.......... .....+++.+...+.|.
T Consensus 142 vapVre~caq~L~~~l~~~~~s~~-~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds 220 (1549)
T KOG0392|consen 142 VAPVREACAQALGAYLKHMDESLI-KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDS 220 (1549)
T ss_pred hhhhHHHHHHHHHHHHHhhhhHhh-HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 357999999999999988765543 555677777777789999887766665544321111 22356788888999999
Q ss_pred ChHHHHHHHHHHHHhhhhhh---hhhh---hhhHHHHHHHhhcCCChh---HHHHHHHHHHHH--HHHhChhhHHHHHHH
Q 010290 371 FPDVRLNIISKLDQVNQVIG---IDLL---SQSLLPAIVELAEDRHWR---VRLAIIEYIPLL--ASQLGVGFFDDKLGA 439 (513)
Q Consensus 371 ~~~vr~~a~~~l~~i~~~~~---~~~~---~~~l~~~l~~l~~~~~~~---vR~~~~~~l~~l--~~~~~~~~~~~~~~~ 439 (513)
+..||..|+..+..+..... .+.+ .+.+...+.++. |..|. .|....+.+... ............+.|
T Consensus 221 ~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~ld-dl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp 299 (1549)
T KOG0392|consen 221 DDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELD-DLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVP 299 (1549)
T ss_pred chHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhh-hcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccch
Confidence 99999999998887766541 1111 122222222221 22222 222222111111 000001111234778
Q ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHhC
Q 010290 440 LCMQWLKDKVYSIRDAAANNVKRLAEEFG 468 (513)
Q Consensus 440 ~l~~~l~d~~~~VR~~a~~~l~~l~~~~~ 468 (513)
-++.++...-..||.++++++..+.+.-+
T Consensus 300 ~~~p~l~~~i~sv~~a~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 300 RLWPFLRHTISSVRRAALETLAMLLEADD 328 (1549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88888899999999999999999988643
No 174
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=97.00 E-value=0.26 Score=45.49 Aligned_cols=245 Identities=15% Similarity=0.119 Sum_probs=132.3
Q ss_pred chhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhh-------
Q 010290 140 TARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQ------- 212 (513)
Q Consensus 140 ~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~------- 212 (513)
..+..|++.++...+++++- ..+.++.-+.+++|.+..||++|.+.|..+|+. ...+.+.|.+.++++
T Consensus 39 k~k~lasq~ip~~fk~fp~l-a~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLnk~sl~~L 113 (460)
T KOG2213|consen 39 KEKRLASQFIPRFFKHFPSL-ADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLNKASLTGL 113 (460)
T ss_pred HHHHHHHHHHHHHHhhCchh-hhHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHHHHHHHHH
Confidence 34556777788888877654 456778888999999999999999999999874 233333343333332
Q ss_pred -----ccchhHHHHHHHHHHHhhccCCh----hhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccch
Q 010290 213 -----DDQDSVRLLAVEGCGALGKLLEP----QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDV 281 (513)
Q Consensus 213 -----d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l 281 (513)
-.++.+|+.++..+..=.-.++. +++...++..+.+.+.|-.-.-=...+..|+.+...-+... -..++
T Consensus 114 f~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeL 193 (460)
T KOG2213|consen 114 FGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQEL 193 (460)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHH
Confidence 13667888777766432222221 33444566666667766544322333344444322111111 11223
Q ss_pred HHHHHHh-----cCCCcHHH----HHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCc-HHHHHHHHHHHHHhchhhC
Q 010290 282 VPAYVRL-----LRDNEAEV----RIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS-QHVRSALATVIMGMAPILG 351 (513)
Q Consensus 282 l~~l~~~-----l~d~~~~v----r~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~ 351 (513)
...+... +.-+++++ -.++..+++-+++..+...+...+...+...-.|.. ...+...+.++..++....
T Consensus 194 a~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~tt 273 (460)
T KOG2213|consen 194 AEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTT 273 (460)
T ss_pred HHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccch
Confidence 2222221 12223333 344555566666666555444443333322222332 3556677788877776553
Q ss_pred HHHHHHhHHHHHHHhcC------CCChHHHHHHHHHHHHhhhhhh
Q 010290 352 KDATIEQLLPIFLSLLK------DEFPDVRLNIISKLDQVNQVIG 390 (513)
Q Consensus 352 ~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~i~~~~~ 390 (513)
. ......+|.+.++|+ |..++....-++|+-.+...+|
T Consensus 274 a-q~a~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~Lg 317 (460)
T KOG2213|consen 274 A-QAARQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHHLG 317 (460)
T ss_pred H-HHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHh
Confidence 2 234566777777664 3345555555566555555544
No 175
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.018 Score=51.14 Aligned_cols=164 Identities=13% Similarity=0.140 Sum_probs=99.0
Q ss_pred hhhccchhHHHHHHHHHHHhhccCCh--hhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHH
Q 010290 210 LTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVR 287 (513)
Q Consensus 210 l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~ 287 (513)
.+.+.+|+....++..+..++.+=++ .+....++..+.+-+++....|-++++.+++.+...++.... +.+=..+..
T Consensus 96 ~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~-~~ld~lv~~ 174 (334)
T KOG2933|consen 96 KLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID-QELDDLVTQ 174 (334)
T ss_pred HhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34444555555555555544433221 011233455555666677777777888888887776655432 122222222
Q ss_pred hc---CCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHH----HHhHH
Q 010290 288 LL---RDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT----IEQLL 360 (513)
Q Consensus 288 ~l---~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~----~~~l~ 360 (513)
++ .+.+.-||..|-.+|..+.....+......++|+ ..+.++++|..++.++......+|.... .....
T Consensus 175 Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~----~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~ 250 (334)
T KOG2933|consen 175 LLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPI----LQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLS 250 (334)
T ss_pred HHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHH----HhhhchhhhhhhhccccccceeccccchhhHhHHHHH
Confidence 22 3445679999999999999888776655555554 5788999999999998888877763222 23344
Q ss_pred HHHHHhcCCCChHHHHHH
Q 010290 361 PIFLSLLKDEFPDVRLNI 378 (513)
Q Consensus 361 ~~l~~~l~d~~~~vr~~a 378 (513)
+.+.+-+.|.-+.+|.++
T Consensus 251 ~a~~~~~~d~Lp~~~~~a 268 (334)
T KOG2933|consen 251 RAAQEQGSDKLPELREAA 268 (334)
T ss_pred HHHHhhhcccccccccch
Confidence 555555666666666444
No 176
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.48 Score=47.64 Aligned_cols=462 Identities=13% Similarity=0.107 Sum_probs=232.7
Q ss_pred cHHHHHHHhcC--ccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhhccCCchHHHHHHHHHhhcccccccC-------
Q 010290 10 PIAVLIDELKN--DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGG------- 80 (513)
Q Consensus 10 ~i~~l~~~l~~--~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~------- 80 (513)
+++..+..... .|+..|..|+..+.++-. ....++-.+..+.+-. .++.+|--..+.|....+.--+
T Consensus 4 diEqav~a~ndp~vdsa~KqqA~~y~~qiKs---Sp~aw~Icie~l~~~t-s~d~vkf~clqtL~e~vrekyne~nl~el 79 (980)
T KOG2021|consen 4 DIEQAVNAVNDPRVDSATKQQAIEYLNQIKS---SPNAWEICIELLINET-SNDLVKFYCLQTLIELVREKYNEANLNEL 79 (980)
T ss_pred HHHHHHHhhCCCcccHHHHHHHHHHHHhhcC---CccHHHHHHHHHHhhc-ccchhhhhhHHHHHHHHHHhhccCCHHHH
Confidence 45555555544 488889999888777632 1223333344444311 5566777766666655442111
Q ss_pred chhhhhhhHHHHH-hhccc----hhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhh---
Q 010290 81 LEYANVLLPPLET-LCTVE----ETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVA--- 152 (513)
Q Consensus 81 ~~~~~~l~~~l~~-l~~~~----~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~--- 152 (513)
.-....+.+.+.. .+.++ .+.++..+...+..+.-...+..-.+.+..++.-+..+.-...-..-++++-.+
T Consensus 80 qlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvllaIdsE 159 (980)
T KOG2021|consen 80 QLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLLAIDSE 159 (980)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHhhhH
Confidence 1233455666633 33444 567888888888776544333221122222222221111100000011111110
Q ss_pred -cC----C----------CCHHHH----HHHHHHHHHHc----CCCchHHHHHHHHhHHHHHHHhhhhh-hHHHHHHHHH
Q 010290 153 -YP----S----------APEALK----TELRTIYRQLC----QDDMPMVRRSAATNLGKFAATVEAAH-LKSEIMSIFE 208 (513)
Q Consensus 153 -~~----~----------~~~~~~----~~l~~~l~~l~----~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~ 208 (513)
+. + ..+..+ .++.....+.+ +..++.+-..+.++++.+.+++.-.- .....++++.
T Consensus 160 iad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy 239 (980)
T KOG2021|consen 160 IADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIANDYFLNLLY 239 (980)
T ss_pred hhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHH
Confidence 00 0 011112 22222222222 23378888889999999998876432 2345677777
Q ss_pred HhhhccchhHHHHHHHHHHHhhcc-CChhhhhhhHHHHHHHh-------cCC--CCHHHHHHHHHHHHHHHHHhCCCc--
Q 010290 209 ELTQDDQDSVRLLAVEGCGALGKL-LEPQDCVAHILPVIVNF-------SQD--KSWRVRYMVANQLYELCEAVGPEP-- 276 (513)
Q Consensus 209 ~l~~d~~~~vr~~a~~~l~~l~~~-~~~~~~~~~l~~~l~~~-------~~d--~~~~vr~~~~~~l~~l~~~~~~~~-- 276 (513)
+.++ -+++|.+|+.|+.++... ..+.+ +-.++..+... ..| .+..+ .+.+..+...+|-+.
T Consensus 240 ~fl~--ieelR~aac~cilaiVsKkMkP~d-KL~lln~L~q~l~lfg~~s~dq~~d~df----~e~vskLitg~gvel~~ 312 (980)
T KOG2021|consen 240 KFLN--IEELRIAACNCILAIVSKKMKPMD-KLALLNMLNQTLELFGYHSADQMDDLDF----WESVSKLITGFGVELTI 312 (980)
T ss_pred HHHh--HHHHHHHHHHHHHHHHhcCCChhH-HHHHHHHHHHHHHHHhhhccccccCchH----HHHHHHHHhhcceeeeh
Confidence 7776 568999999999887754 44332 22233333111 112 22222 223333333333221
Q ss_pred ------------c-------ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH---------HHHHhhhhhhhhhc
Q 010290 277 ------------T-------RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---------LAIQHILPCVKELS 328 (513)
Q Consensus 277 ------------~-------~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---------~~~~~l~~~l~~~~ 328 (513)
+ ...++|.+++.+.+...++-.+....+......+... .+.+.+...+.+..
T Consensus 313 i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqic 392 (980)
T KOG2021|consen 313 IISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQIC 392 (980)
T ss_pred hHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHh
Confidence 0 1236788888888888777777766666655443221 12222222223322
Q ss_pred ------CCCc----------HHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHH---hcCCCChHHHHHHHHHHHHhhhhh
Q 010290 329 ------SDSS----------QHVRSALATVIMGMAPILGKDATIEQLLPIFLS---LLKDEFPDVRLNIISKLDQVNQVI 389 (513)
Q Consensus 329 ------~d~~----------~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~---~l~d~~~~vr~~a~~~l~~i~~~~ 389 (513)
.|.+ ..+|...-.....++ ...++.+...+-..+.. ..+.+.+..-+.|+..+-.+++.+
T Consensus 393 ydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~-~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l 471 (980)
T KOG2021|consen 393 YDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIV-VIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECL 471 (980)
T ss_pred ccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcc
Confidence 1111 234443322222222 22333333333333333 334455667778888877777765
Q ss_pred hhhh------------hhhhHHHHHHH--hhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHH------HhcCch
Q 010290 390 GIDL------------LSQSLLPAIVE--LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ------WLKDKV 449 (513)
Q Consensus 390 ~~~~------------~~~~l~~~l~~--l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~------~l~d~~ 449 (513)
..+. .....++.+.+ ....++..|..-..+.+.+-.+.+..+ .+-+|.++. .+.+.+
T Consensus 472 ~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e---sq~ip~vL~aFld~rglhn~n 548 (980)
T KOG2021|consen 472 KNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE---SQKIPLVLNAFLDSRGLHNKN 548 (980)
T ss_pred ccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc---hhhhHHHHHHHccchhccccc
Confidence 3321 11122233322 233455556666666665544444333 223454444 456788
Q ss_pred hHHHHHHHHHHHHHHHHhChhhH--hhhhHHHHHhhhcC
Q 010290 450 YSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVALIKSS 486 (513)
Q Consensus 450 ~~VR~~a~~~l~~l~~~~~~~~~--~~~i~~~L~~~~~~ 486 (513)
..||..|...+.++.+.+.+..+ .+.++..+.++++.
T Consensus 549 e~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~ 587 (980)
T KOG2021|consen 549 ENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHI 587 (980)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999888776544 37788888887743
No 177
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=96.98 E-value=0.23 Score=43.93 Aligned_cols=168 Identities=15% Similarity=0.179 Sum_probs=104.2
Q ss_pred HHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHH-
Q 010290 170 QLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN- 248 (513)
Q Consensus 170 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~- 248 (513)
++.+..++++.....++|..++.+-. ...+.++..+..+.+.+....+..+.+.+..+.+.-+. ..+.+-+.+..
T Consensus 8 ~l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r--~f~~L~~~L~~~ 83 (234)
T PF12530_consen 8 KLGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR--HFPFLQPLLLLL 83 (234)
T ss_pred HhcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch--HHHHHHHHHHHH
Confidence 35666778888888888888776531 33445556666666666666666666666665544221 11222222222
Q ss_pred --------hcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc-CCCcHHHHHHHHHhHHHHHhhh--ChHHHH
Q 010290 249 --------FSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRIL--NPELAI 317 (513)
Q Consensus 249 --------~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~--~~~~~~ 317 (513)
.-.+..|....+.+.++..++...+. ...++++.+..++ ++.++.++..+++++..+++.- +....+
T Consensus 84 ~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w 161 (234)
T PF12530_consen 84 ILRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAW 161 (234)
T ss_pred HhhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 11345677888878888888887666 3578999999999 8888999999999999999542 222233
Q ss_pred HhhhhhhhhhcCCCcHHHHHHHHHHHHHh
Q 010290 318 QHILPCVKELSSDSSQHVRSALATVIMGM 346 (513)
Q Consensus 318 ~~l~~~l~~~~~d~~~~vr~~~~~~l~~l 346 (513)
..+.+.+ -.+..+.+-...+..+..+
T Consensus 162 ~vl~~~l---~~~~rp~v~~~l~~l~~l~ 187 (234)
T PF12530_consen 162 KVLQKKL---SLDYRPLVLKSLCSLFALV 187 (234)
T ss_pred HHHHHhc---CCccchHHHHHHHHHHHHh
Confidence 3344433 3445556655555554443
No 178
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=96.93 E-value=0.21 Score=47.27 Aligned_cols=107 Identities=15% Similarity=0.169 Sum_probs=58.5
Q ss_pred hHHHHHHHhhcCC--ChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCch----------hHHHHHHHHHHHHHH
Q 010290 397 SLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKV----------YSIRDAAANNVKRLA 464 (513)
Q Consensus 397 ~l~~~l~~l~~~~--~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~----------~~VR~~a~~~l~~l~ 464 (513)
..-..+..++-++ .|.+|..++..+..+....+.. +...++..+..++.+.. ...+. ....+..++
T Consensus 204 ~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~~~l~~~~~~~~~s~~~~~~~~~-~~~v~~ai~ 281 (339)
T PF12074_consen 204 AWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLWKWLSSSETGDKESSAENSSDKN-LSPVLSAIC 281 (339)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHhccccccccccccccccc-cccchHHHH
Confidence 4455566666666 8999999999999888764433 55556777766664322 11111 122223333
Q ss_pred HHhCh-------hhHhhhhHHHHHhhhcCcchHH-HHHHHHHHHhcccc
Q 010290 465 EEFGP-------DWAMQHIVPQVALIKSSRNLVL-NSVLSLLKNAGIDA 505 (513)
Q Consensus 465 ~~~~~-------~~~~~~i~~~L~~~~~~~~~~~-r~~~~~~~~i~~~~ 505 (513)
...+. ....+..+..+.-+..++-... ..|+..+.++|.|-
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~lLvla~hp~i~~~~~Wi~L~~~~~lDP 330 (339)
T PF12074_consen 282 LAPADLSISDGSSADLESQLVSLLVLAHHPLIPRKNLWIDLCQRAGLDP 330 (339)
T ss_pred hhhHhhhccccchhHHHHHHHHHHHHhCcHhhcccchHHHHHHHcCCCH
Confidence 22111 0002344444444444542222 26888888888774
No 179
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.93 E-value=0.49 Score=46.83 Aligned_cols=283 Identities=11% Similarity=0.012 Sum_probs=142.3
Q ss_pred HHHHHHHHHhhcccccccCchhhhhhhHHHHHhhccc-hhHHHHHHHHHHHHHHhhcCh--HHHHhhHHHHHHHhhcCCC
Q 010290 62 EVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVE-ETCVRDKAVESLCRIGSQMRE--QDVVEHFIPLVKRLAAGEW 138 (513)
Q Consensus 62 ~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~vR~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~l~~d~~ 138 (513)
..|..+++.+........- .....+......++..+ ..+.|+.+.+.+..+++.-.. ......+...+..-..+++
T Consensus 5 ~~R~~a~~~l~~~i~~~~~-~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d 83 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPL-SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDD 83 (464)
T ss_pred HHHHHHHHHHHHHHHhCCc-hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchh
Confidence 4577777777765554433 33445555556666544 567899999999999887544 2233334455544444555
Q ss_pred cchhhhHHhhhHhhcCCC---CHHHHHHHHHHHHHHcC---C-------------C-------chHHHHHHHHhHHHHHH
Q 010290 139 FTARVSSCGLFHVAYPSA---PEALKTELRTIYRQLCQ---D-------------D-------MPMVRRSAATNLGKFAA 192 (513)
Q Consensus 139 ~~~R~~~~~~l~~~~~~~---~~~~~~~l~~~l~~l~~---d-------------~-------~~~vr~~a~~~l~~l~~ 192 (513)
...|..+...+..=.+.+ ..+..+-+...+....+ . . +...-.....-+..+.+
T Consensus 84 ~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviK 163 (464)
T PF11864_consen 84 FDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIK 163 (464)
T ss_pred HHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHh
Confidence 667777777665443333 11222222222222220 0 0 00001111111222222
Q ss_pred Hh---hhhhhHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhhcc--CChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010290 193 TV---EAAHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKL--LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLY 266 (513)
Q Consensus 193 ~~---~~~~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~ 266 (513)
.- -.+.....++..+..++... +...-..++..+..+..+ +|.+ ....++..+....+-. .....+-+++.
T Consensus 164 fn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~-sl~~~i~vLCsi~~~~--~l~~~~w~~m~ 240 (464)
T PF11864_consen 164 FNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSE-SLSPCIEVLCSIVNSV--SLCKPSWRTMR 240 (464)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChH-HHHHHHHHHhhHhccc--ccchhHHHHHH
Confidence 11 11334455566555555432 223336677777766653 3433 3344455544443222 22333333444
Q ss_pred HHHHHhCCCccccchHHHHHHhcC--C----CcHHHHHHHHHhHHHHHhhhChHHH------HHhhhhhhhhhcCCCcHH
Q 010290 267 ELCEAVGPEPTRSDVVPAYVRLLR--D----NEAEVRIAAAGKVTKICRILNPELA------IQHILPCVKELSSDSSQH 334 (513)
Q Consensus 267 ~l~~~~~~~~~~~~ll~~l~~~l~--d----~~~~vr~~a~~~l~~~~~~~~~~~~------~~~l~~~l~~~~~d~~~~ 334 (513)
+++. ... ....+..+...+. + .+..+-.+|+..++.+.-..+.+.+ ...++|.+...++.++..
T Consensus 241 nL~~---S~~-g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~ 316 (464)
T PF11864_consen 241 NLLK---SHL-GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPR 316 (464)
T ss_pred HHHc---Ccc-HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCe
Confidence 4442 211 2344455555552 2 2345566888888887665433311 123778887777777777
Q ss_pred HHHHHHHHHHHhc-hhhCH
Q 010290 335 VRSALATVIMGMA-PILGK 352 (513)
Q Consensus 335 vr~~~~~~l~~l~-~~~~~ 352 (513)
|-..++..+..+. +.++.
T Consensus 317 v~~eIl~~i~~ll~~~~~~ 335 (464)
T PF11864_consen 317 VDYEILLLINRLLDGKYGR 335 (464)
T ss_pred ehHHHHHHHHHHHhHhhhh
Confidence 7777777777766 44443
No 180
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.92 E-value=0.43 Score=45.90 Aligned_cols=193 Identities=13% Similarity=0.130 Sum_probs=90.3
Q ss_pred HHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHh
Q 010290 107 VESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATN 186 (513)
Q Consensus 107 ~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~ 186 (513)
+.++..+.+..++++...+++-++..+..+....++ .|..... .++ +....|..+++.+++.+...++..
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~-----~f~~~~~-~~~----~~~~~fl~lL~~~d~~i~~~a~~i 124 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVK-----LFHDDAL-LKK----KTWEPFFNLLNRQDQFIVHMSFSI 124 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHH-----HHHHHhh-ccc----cchHHHHHHHcCCchhHHHHHHHH
Confidence 334444445555555556666666655554322111 1111110 011 123334446666778888888888
Q ss_pred HHHHHHHhhh---hhhHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhhccCChh--hhhhhHHHHHHHhcCCC--CHHHH
Q 010290 187 LGKFAATVEA---AHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDK--SWRVR 258 (513)
Q Consensus 187 l~~l~~~~~~---~~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~--~~~vr 258 (513)
+..+...-.. ......+.+.+...+..+ +......++.++..+...-.-. ......++.+..++... +....
T Consensus 125 Lt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~ 204 (429)
T cd00256 125 LAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQ 204 (429)
T ss_pred HHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHH
Confidence 8877643111 122333455555555432 3455666677777766542211 11122344444444322 33444
Q ss_pred HHHHHHHHHHHHHh--CCCccccchHHHHHHhcCCCc-HHHHHHHHHhHHHHHh
Q 010290 259 YMVANQLYELCEAV--GPEPTRSDVVPAYVRLLRDNE-AEVRIAAAGKVTKICR 309 (513)
Q Consensus 259 ~~~~~~l~~l~~~~--~~~~~~~~ll~~l~~~l~d~~-~~vr~~a~~~l~~~~~ 309 (513)
..++-++-.++-.- ........++|.+...+++.. +.|-+-++..+..+..
T Consensus 205 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 205 YQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 44444444332110 011112467788887776653 3344444555555554
No 181
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=96.91 E-value=0.37 Score=45.80 Aligned_cols=226 Identities=13% Similarity=0.069 Sum_probs=133.0
Q ss_pred hhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcCh-HHHHhhHHH-HH-HHhhcC-CCcchhhhHHhhhHhhcCC--CCH
Q 010290 85 NVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-QDVVEHFIP-LV-KRLAAG-EWFTARVSSCGLFHVAYPS--APE 158 (513)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-~~~~~~~~~-~l-~~l~~d-~~~~~R~~~~~~l~~~~~~--~~~ 158 (513)
....+-+..++-+++..||.++.+.+..+...... ..+...=++ ++ ..+..+ +....|..|..++..+.+. ...
T Consensus 24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~ 103 (371)
T PF14664_consen 24 SFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK 103 (371)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc
Confidence 33344443333344499999999999887765322 222222122 22 233333 3467899999998887765 344
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhh-
Q 010290 159 ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD- 237 (513)
Q Consensus 159 ~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~- 237 (513)
+.-..++..+....++++...|..+.+.+.+++-.-+.-.....-+..+.+.+.|+..++-...+.++-.+...-....
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~y 183 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKY 183 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhh
Confidence 4556788888999999999999999999999886544323333344555555665544555556666655554422211
Q ss_pred -----hhhhHHHHHHHh----cCCCCH-HHHHHHHHHHHHHHHHhCCCcc----ccchHHHHHHhcCCCcHHHHHHHHHh
Q 010290 238 -----CVAHILPVIVNF----SQDKSW-RVRYMVANQLYELCEAVGPEPT----RSDVVPAYVRLLRDNEAEVRIAAAGK 303 (513)
Q Consensus 238 -----~~~~l~~~l~~~----~~d~~~-~vr~~~~~~l~~l~~~~~~~~~----~~~ll~~l~~~l~d~~~~vr~~a~~~ 303 (513)
....++..+... .++... ..-..+..++..+......-.+ ..+-+..+...+.-+.+++|...+..
T Consensus 184 l~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildl 263 (371)
T PF14664_consen 184 LRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDL 263 (371)
T ss_pred hcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHH
Confidence 122233333333 122221 2334455566666665443221 11567777788888888899988887
Q ss_pred HHHHHhh
Q 010290 304 VTKICRI 310 (513)
Q Consensus 304 l~~~~~~ 310 (513)
+-.+...
T Consensus 264 l~dllri 270 (371)
T PF14664_consen 264 LFDLLRI 270 (371)
T ss_pred HHHHHCC
Confidence 7777653
No 182
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=96.86 E-value=0.3 Score=49.31 Aligned_cols=330 Identities=15% Similarity=0.144 Sum_probs=169.6
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhh-----hhhhhh-ccCCchHHHHHHHHHhhcccccccC-ch
Q 010290 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKEL-----IPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG-LE 82 (513)
Q Consensus 10 ~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l-----~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~-~~ 82 (513)
.+++.+..|.+.++.++..|.-.+..++. +..+.+.++ +|.+.. +.+.+.+|++.++.+|.+++..-.. ++
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcf--gd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCF--GDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHh--hhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 46788889999999999999888877754 333333332 455555 6789999999999999988764332 11
Q ss_pred h-----hhhhhHHHHHhhccchhHHHHHHHHHHHHHHhh--cChHHHHhhHHHHHH-Hh----h--cCCC-------cch
Q 010290 83 Y-----ANVLLPPLETLCTVEETCVRDKAVESLCRIGSQ--MREQDVVEHFIPLVK-RL----A--AGEW-------FTA 141 (513)
Q Consensus 83 ~-----~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~--~~~~~~~~~~~~~l~-~l----~--~d~~-------~~~ 141 (513)
. ...+..++..+-.-.|.+||+...-.|.++.+. +....+... ++.+. +. . .+++ ..+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~a-l~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSA-LSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHH-HHHHHHhhcccccccCCCCccccccccee
Confidence 1 122333344444457888999888888877665 211111111 11111 11 1 1111 122
Q ss_pred hhhHHhhhHhhcCCCCHH-----HHHHHHHHHHHHc----C---CCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHH
Q 010290 142 RVSSCGLFHVAYPSAPEA-----LKTELRTIYRQLC----Q---DDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEE 209 (513)
Q Consensus 142 R~~~~~~l~~~~~~~~~~-----~~~~l~~~l~~l~----~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 209 (513)
-..+..++..+.....+. ....++..|+..+ + -.+..|.. +...+..+.-.+..+ +.+...+.+..
T Consensus 391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VEN-cvCilRNLSYrl~~E-vp~~~~~~~~~ 468 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVEN-CVCILRNLSYRLEAE-VPPKYRQVLAN 468 (717)
T ss_pred eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHH-HHHHHhhcCchhhhh-cCHhhhhHhhc
Confidence 233444444443322221 1122333333322 2 12344443 333344433222211 11111111111
Q ss_pred hh---hccchhHHHHHHHHHHHhhcc---------CChhh---------hhhhHHHHHHHhc-CCCCHHHHHHHHHHHHH
Q 010290 210 LT---QDDQDSVRLLAVEGCGALGKL---------LEPQD---------CVAHILPVIVNFS-QDKSWRVRYMVANQLYE 267 (513)
Q Consensus 210 l~---~d~~~~vr~~a~~~l~~l~~~---------~~~~~---------~~~~l~~~l~~~~-~d~~~~vr~~~~~~l~~ 267 (513)
.- .-..+. ....|++.-... +++.. +.+.++..-..++ ...+..+-++++-+|.+
T Consensus 469 ~~~~~~~~~~~---~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQN 545 (717)
T KOG1048|consen 469 IARLPGVGPPA---ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQN 545 (717)
T ss_pred ccccccCCCcc---cccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhh
Confidence 10 000010 112222222111 11111 1223443322333 34456677777778887
Q ss_pred HHHHhCCC-------c-cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH-HHHHhhhhhhhhhcCC------Cc
Q 010290 268 LCEAVGPE-------P-TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKELSSD------SS 332 (513)
Q Consensus 268 l~~~~~~~-------~-~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-~~~~~l~~~l~~~~~d------~~ 332 (513)
++..-+.. . ..+.-+|.++.++...+..|..+++.+|..+....... .+....+|.+...+.+ .+
T Consensus 546 ltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~s 625 (717)
T KOG1048|consen 546 LTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLS 625 (717)
T ss_pred hhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCch
Confidence 76543221 1 24567899999999999899999999999887654332 3334556666665533 34
Q ss_pred HHHHHHHHHHHHHhc
Q 010290 333 QHVRSALATVIMGMA 347 (513)
Q Consensus 333 ~~vr~~~~~~l~~l~ 347 (513)
+.+-.+++..+..+.
T Consensus 626 edtv~~vc~tl~niv 640 (717)
T KOG1048|consen 626 EDTVRAVCHTLNNIV 640 (717)
T ss_pred HHHHHHHHHhHHHHH
Confidence 677778888887776
No 183
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.80 E-value=0.023 Score=41.48 Aligned_cols=82 Identities=16% Similarity=0.035 Sum_probs=64.0
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHHH
Q 010290 401 AIVELAEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 479 (513)
Q Consensus 401 ~l~~l~~~~~~~vR~~~~~~l~~l~~~~~-~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~ 479 (513)
.....+.|+...+|..++..+..++..-. .....+.++..++..+.|+++-|=.+|++++..++...+ +.++|.
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-----~~vl~~ 81 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-----DEVLPI 81 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-----HHHHHH
Confidence 34445578888899999999988887755 333446788999999999999999999999999998765 357788
Q ss_pred HHhhhcCc
Q 010290 480 VALIKSSR 487 (513)
Q Consensus 480 L~~~~~~~ 487 (513)
|.+...++
T Consensus 82 L~~~y~~~ 89 (92)
T PF10363_consen 82 LLDEYADP 89 (92)
T ss_pred HHHHHhCc
Confidence 77766554
No 184
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.78 Score=46.48 Aligned_cols=324 Identities=14% Similarity=0.125 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHcCCC-chHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhhccCC----
Q 010290 161 KTELRTIYRQLCQDD-MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLE---- 234 (513)
Q Consensus 161 ~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~---- 234 (513)
..+-++.++....+. -.+=|+.|+.+|..+++.+..+.....+-|++..+-.|- +++.-..++.++..+...=.
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v 99 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV 99 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence 344555666555544 367799999999999998776655556666666666663 55677777777776664421
Q ss_pred --hh----hh----------hhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc-----ccchHHHHHHhcCCCc
Q 010290 235 --PQ----DC----------VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-----RSDVVPAYVRLLRDNE 293 (513)
Q Consensus 235 --~~----~~----------~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~-----~~~ll~~l~~~l~d~~ 293 (513)
.+ ++ .+..+..+...++..+..||..+++.+..+....|.+.- .+.=+..++.++.|..
T Consensus 100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr 179 (970)
T KOG0946|consen 100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR 179 (970)
T ss_pred cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh
Confidence 10 00 122566677778888999999999999999887776531 2445677888999999
Q ss_pred HHHHHHHHHhHHHHHhhhChH---HHHHhhhhhhhhhcC----CCcHHHHHHHHHHHHHhchhh--CHHHHH-HhHHHHH
Q 010290 294 AEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSS----DSSQHVRSALATVIMGMAPIL--GKDATI-EQLLPIF 363 (513)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~----d~~~~vr~~~~~~l~~l~~~~--~~~~~~-~~l~~~l 363 (513)
.-||..++-.|..+.+..+.- -..+.++..+...+. -..--|-.-++..+..+.+.- ...+|. ...+|.+
T Consensus 180 E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL 259 (970)
T KOG0946|consen 180 EPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRL 259 (970)
T ss_pred hhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHH
Confidence 999999999998888754321 001122222222222 122244444555555554432 222332 4567777
Q ss_pred HHhc-----CCC----ChHHHHHHHHHHHHhhhhh---hhh----------hhhhhHHHHHHHhhcCC--ChhHHHHHHH
Q 010290 364 LSLL-----KDE----FPDVRLNIISKLDQVNQVI---GID----------LLSQSLLPAIVELAEDR--HWRVRLAIIE 419 (513)
Q Consensus 364 ~~~l-----~d~----~~~vr~~a~~~l~~i~~~~---~~~----------~~~~~l~~~l~~l~~~~--~~~vR~~~~~ 419 (513)
.++| .|+ ...-|...+..+-.++..+ |.. -....++..+...+.++ ...++..++.
T Consensus 260 ~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesii 339 (970)
T KOG0946|consen 260 LKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESII 339 (970)
T ss_pred HhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHH
Confidence 7665 342 1223333333322222221 110 11234566666666555 4667877777
Q ss_pred HHHHHHHHhChh--hHH-----------HHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhhc
Q 010290 420 YIPLLASQLGVG--FFD-----------DKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKS 485 (513)
Q Consensus 420 ~l~~l~~~~~~~--~~~-----------~~~~~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~ 485 (513)
.++.++++.... .|. ..++-.++.+.+. ..+..|.+.+.++..+.-. .++....++..+....+
T Consensus 340 tvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~d--N~~gq~~~l~tllp~~~ 417 (970)
T KOG0946|consen 340 TVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYD--NDDGQRKFLKTLLPSST 417 (970)
T ss_pred HHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhc--chhhHHHHHHHHhhhhc
Confidence 777777653211 111 1233334444444 3457888888888765542 22233455555555444
Q ss_pred C
Q 010290 486 S 486 (513)
Q Consensus 486 ~ 486 (513)
+
T Consensus 418 n 418 (970)
T KOG0946|consen 418 N 418 (970)
T ss_pred c
Confidence 4
No 185
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.74 E-value=0.59 Score=44.96 Aligned_cols=285 Identities=11% Similarity=-0.021 Sum_probs=136.3
Q ss_pred hhcCCCcchhhhHHhhhHhhcCCCCH----HHHHHHHHHHHHHcCCC-chHHHHHHHHhHHHHHHHhhh-hhh-HHHHHH
Q 010290 133 LAAGEWFTARVSSCGLFHVAYPSAPE----ALKTELRTIYRQLCQDD-MPMVRRSAATNLGKFAATVEA-AHL-KSEIMS 205 (513)
Q Consensus 133 l~~d~~~~~R~~~~~~l~~~~~~~~~----~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~-~~~-~~~l~~ 205 (513)
+...+++.+...++.+++.+...... .....+.+.+...+..+ +...+..++.++..+.+.-.- ..+ ....++
T Consensus 109 lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~ 188 (429)
T cd00256 109 LLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVP 188 (429)
T ss_pred HHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHH
Confidence 34455677777888877766543221 13333555555555533 345555566777766542111 111 122334
Q ss_pred HHHHhhhcc--chhHHHHHHHHHHHhhccCC--hhhhhhhHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCCc----
Q 010290 206 IFEELTQDD--QDSVRLLAVEGCGALGKLLE--PQDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEP---- 276 (513)
Q Consensus 206 ~l~~l~~d~--~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~~---- 276 (513)
.+..+++.. +-+....++-++--+.-.-. .......++|.+.+.+.+. ..+|-+.++.++.++...-.+..
T Consensus 189 ~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~ 268 (429)
T cd00256 189 TLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKT 268 (429)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhh
Confidence 444444321 22444444444433321111 1111234777777776553 44555555667777765321110
Q ss_pred -----cccchHHHHHHhcC--CCcHHHHHHHHHhHHHHHh-h---hC-hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH
Q 010290 277 -----TRSDVVPAYVRLLR--DNEAEVRIAAAGKVTKICR-I---LN-PELAIQHILPCVKELSSDSSQHVRSALATVIM 344 (513)
Q Consensus 277 -----~~~~ll~~l~~~l~--d~~~~vr~~a~~~l~~~~~-~---~~-~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~ 344 (513)
....+++.+..+.. =.|+++.... ..+....+ . +. -+.+..++.. ..+.. ++..+.. ..+.
T Consensus 269 ~~~~mv~~~l~~~l~~L~~rk~~DedL~edl-~~L~e~L~~~~k~ltsfD~Y~~El~s---g~L~W-Sp~H~se--~FW~ 341 (429)
T cd00256 269 AALQMVQCKVLKTLQSLEQRKYDDEDLTDDL-KFLTEELKNSVQDLSSFDEYKSELRS---GRLHW-SPVHKSE--KFWR 341 (429)
T ss_pred HHHHHHHcChHHHHHHHhcCCCCcHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHhc---CCccC-CCCCCCc--hHHH
Confidence 11234443333322 1344444322 22222221 1 11 1122222211 11111 1111110 1111
Q ss_pred HhchhhCHHHHHHhHHHHHHHhcC-CCChHHHHHHHHHHHHhhhhh--hhhhhh-hhHHHHHHHhhcCCChhHHHHHHHH
Q 010290 345 GMAPILGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVI--GIDLLS-QSLLPAIVELAEDRHWRVRLAIIEY 420 (513)
Q Consensus 345 ~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~i~~~~--~~~~~~-~~l~~~l~~l~~~~~~~vR~~~~~~ 420 (513)
.=+..+..+. -.++..+.++|. +.++.+-..||.-+|.++... |...+. -.....+.+++++++..||..|+.+
T Consensus 342 EN~~kf~~~~--~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~a 419 (429)
T cd00256 342 ENADRLNEKN--YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLA 419 (429)
T ss_pred HHHHHHHhcc--hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 1122222322 235667777773 556778888888899998875 333322 2566778888889999999999999
Q ss_pred HHHHHH
Q 010290 421 IPLLAS 426 (513)
Q Consensus 421 l~~l~~ 426 (513)
+..+.-
T Consensus 420 vQklm~ 425 (429)
T cd00256 420 VQKLMV 425 (429)
T ss_pred HHHHHH
Confidence 988754
No 186
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.66 E-value=0.33 Score=51.26 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=92.5
Q ss_pred cCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhC----HHHHHHhHHHHHH
Q 010290 289 LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG----KDATIEQLLPIFL 364 (513)
Q Consensus 289 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~~~l~ 364 (513)
..|-++++|..+++.||.+++.++.--+....+.++-..+.|.+..||...+.+|..+...-. -..+.+.+-..++
T Consensus 296 YRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIV 375 (1048)
T KOG2011|consen 296 YRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIV 375 (1048)
T ss_pred cccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 378899999999999999999887655566778888888999999999999999999876511 1223344444445
Q ss_pred Hhc-CCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHH
Q 010290 365 SLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 422 (513)
Q Consensus 365 ~~l-~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~ 422 (513)
.+. .|.+..||...+..+-.... ...+...-+..+..++-|.+.+++.++...+.
T Consensus 376 eMadrd~~~~Vrav~L~~~~~~~~---~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 376 EMADRDRNVSVRAVGLVLCLLLSS---SGLLSDKDILIVYSLIYDSNRRVAVAAGEFLY 431 (1048)
T ss_pred HHHhhhcchhHHHHHHHHHHHHhc---ccccChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 554 66677888776654443321 11122344455667778888888888877764
No 187
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.63 E-value=0.045 Score=45.73 Aligned_cols=21 Identities=5% Similarity=-0.039 Sum_probs=10.3
Q ss_pred hcCCCcchhhhHHhhhHhhcC
Q 010290 134 AAGEWFTARVSSCGLFHVAYP 154 (513)
Q Consensus 134 ~~d~~~~~R~~~~~~l~~~~~ 154 (513)
..|++..+|.+|+..+..+.+
T Consensus 49 l~Dp~~kvR~aA~~~l~~lL~ 69 (182)
T PF13251_consen 49 LKDPSPKVRAAAASALAALLE 69 (182)
T ss_pred HcCCchhHHHHHHHHHHHHHH
Confidence 344555555555555544443
No 188
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.62 E-value=0.041 Score=45.97 Aligned_cols=145 Identities=14% Similarity=0.131 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHH
Q 010290 102 VRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRR 181 (513)
Q Consensus 102 vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~ 181 (513)
||..|+.++..+++..++..+ ..+...+..|.+...+.. -...+.-++.|+++.+|.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l----~~yW~~llP~~~~~~~~~-------------------~~sLlt~il~Dp~~kvR~ 58 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSL----FGYWPALLPDSVLQGRPA-------------------TPSLLTCILKDPSPKVRA 58 (182)
T ss_pred hhHHHHHHHHHHHHhcCCcee----HhhHHHHCCCCCCcCCCC-------------------CcchhHHHHcCCchhHHH
Confidence 799999999999998765433 333333333331111100 113344457799999999
Q ss_pred HHHHhHHHHHHHhhhh----------------------hhHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhhccCChh--
Q 010290 182 SAATNLGKFAATVEAA----------------------HLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEPQ-- 236 (513)
Q Consensus 182 ~a~~~l~~l~~~~~~~----------------------~~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~-- 236 (513)
+++..+..+.....+- .....+...+...+.. .+..+-...++++..+....+-.
T Consensus 59 aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL 138 (182)
T PF13251_consen 59 AAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL 138 (182)
T ss_pred HHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc
Confidence 9999999887643220 0001122222223332 34445555666666666554432
Q ss_pred --hhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 010290 237 --DCVAHILPVIVNFSQDKSWRVRYMVANQLYELC 269 (513)
Q Consensus 237 --~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~ 269 (513)
.+.+.++..+...+.+.+..+|..+..+++.+.
T Consensus 139 ~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 139 PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALL 173 (182)
T ss_pred CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 222333333444444455555555555555444
No 189
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.61 E-value=0.026 Score=41.22 Aligned_cols=70 Identities=21% Similarity=0.195 Sum_probs=46.6
Q ss_pred HHHHHHHcCCCchHHHHHHHHhHHHHHHHhh-hhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCC
Q 010290 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVE-AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE 234 (513)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 234 (513)
++.....++|+.+.||..+...|..+...-. +....+.++.++...+.|+++-|=-+|++++..++...+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 3444555667777777777777777766554 334455667777777777777777777777777776544
No 190
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=1.1 Score=45.67 Aligned_cols=298 Identities=15% Similarity=0.121 Sum_probs=163.1
Q ss_pred hhhhhhhhccCCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhccc-hhHHHHHHHHHHHHHHhhc--ChHHHHh
Q 010290 48 ELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVE-ETCVRDKAVESLCRIGSQM--REQDVVE 124 (513)
Q Consensus 48 ~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~vR~~a~~~l~~l~~~~--~~~~~~~ 124 (513)
.++|-+..-.+...-+|+.++..+|..+..--..+....+...+..++.|. +..||-.++.++....+.+ +++.+.+
T Consensus 488 ~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp 567 (978)
T KOG1993|consen 488 ALLPELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLP 567 (978)
T ss_pred hhCHHhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhh
Confidence 445554432223345899999999988873333344445555666777776 6678889999999988864 4454444
Q ss_pred hH---HHHHHHhhc-CCCcchhhhHHhhhHhhcCCCCHH---HHHHHHHHHHHHcC--CCchHHHHHHHHhHHHHHHHhh
Q 010290 125 HF---IPLVKRLAA-GEWFTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQ--DDMPMVRRSAATNLGKFAATVE 195 (513)
Q Consensus 125 ~~---~~~l~~l~~-d~~~~~R~~~~~~l~~~~~~~~~~---~~~~l~~~l~~l~~--d~~~~vr~~a~~~l~~l~~~~~ 195 (513)
++ .-.+..+.+ -+....|......++.+....++. +...+++.+-.+.+ ...+-.|.+....+..+...+|
T Consensus 568 ~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg 647 (978)
T KOG1993|consen 568 YLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALG 647 (978)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhc
Confidence 32 111222222 244566888888888887777665 45555555555544 2467889999999999999987
Q ss_pred h--hhhHHHHHHHHHHhhhccchh---HHHHHHHHHHHhhccCCh-hhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 010290 196 A--AHLKSEIMSIFEELTQDDQDS---VRLLAVEGCGALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELC 269 (513)
Q Consensus 196 ~--~~~~~~l~~~l~~l~~d~~~~---vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~ 269 (513)
. ....+-++|.+....+-++++ .-+-+++.+..+....+. .+-.-.+.|++...++-.....|. +.+.+....
T Consensus 648 ~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~L~t-~l~Ii~sYi 726 (978)
T KOG1993|consen 648 AQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTENLPT-VLMIISSYI 726 (978)
T ss_pred cCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHH
Confidence 6 345677888766554433332 445566666665554332 111233666666665544333332 222222222
Q ss_pred HHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhC-hH-----HHHHhhhhhhhh--hcCCCcHHHHHHHHH
Q 010290 270 EAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN-PE-----LAIQHILPCVKE--LSSDSSQHVRSALAT 341 (513)
Q Consensus 270 ~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~-~~-----~~~~~l~~~l~~--~~~d~~~~vr~~~~~ 341 (513)
-. ....+.+..-..+.+-+.+--.+||.....++-.+.+.+= .. .+...++|.+.. ..+++.+.+-...+.
T Consensus 727 lL-d~~~fl~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~ 805 (978)
T KOG1993|consen 727 LL-DNTVFLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNPILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLL 805 (978)
T ss_pred hh-ccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhhhcchhhHHHHHHHHhCCCCchhHHHHHH
Confidence 11 1111222222233333333334666666665555444321 11 111233343322 225666777666666
Q ss_pred HHHHhc
Q 010290 342 VIMGMA 347 (513)
Q Consensus 342 ~l~~l~ 347 (513)
.++.+.
T Consensus 806 vvaRi~ 811 (978)
T KOG1993|consen 806 VVARIS 811 (978)
T ss_pred HHHHHH
Confidence 665543
No 191
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=96.56 E-value=0.69 Score=43.44 Aligned_cols=133 Identities=11% Similarity=0.047 Sum_probs=86.0
Q ss_pred HhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhh--hhhhhhHHHHHHHhh-----cCCChhHHHHHHHHHHHHHHH-h
Q 010290 357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELA-----EDRHWRVRLAIIEYIPLLASQ-L 428 (513)
Q Consensus 357 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~-----~~~~~~vR~~~~~~l~~l~~~-~ 428 (513)
++++..+..++.+.+.+......-++|.++..-.. ..+.+.++..+.+.+ .|++.++..+++.++..++-- .
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 45788888999999999999999999988754211 122334444444333 466788888888888776532 2
Q ss_pred ChhhH-HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh---H-hhhhHHHHHhhhcCcch
Q 010290 429 GVGFF-DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---A-MQHIVPQVALIKSSRNL 489 (513)
Q Consensus 429 ~~~~~-~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~---~-~~~i~~~L~~~~~~~~~ 489 (513)
+...+ ...+...++..+.-..|.|...-..++.-+......-- . ....+-.|.++.+.++|
T Consensus 394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~ 459 (604)
T KOG4500|consen 394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDF 459 (604)
T ss_pred chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCcc
Confidence 32222 23466678888888888888777777766554322100 0 25677888888887755
No 192
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=96.54 E-value=0.048 Score=51.26 Aligned_cols=137 Identities=17% Similarity=0.218 Sum_probs=85.9
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCC-------ChhHHHHHHHHHHHHHHH--hChhh
Q 010290 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-------HWRVRLAIIEYIPLLASQ--LGVGF 432 (513)
Q Consensus 362 ~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~-------~~~vR~~~~~~l~~l~~~--~~~~~ 432 (513)
.+...+.+.+...|..|+..|.. +.-.+.++|.+..++.+. +...-...+.++.++... +.-+.
T Consensus 182 ~It~a~~~~~~~~r~~aL~sL~t-------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~ 254 (343)
T cd08050 182 EITEALVGSNEEKRREALQSLRT-------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEP 254 (343)
T ss_pred HHHHHHhCCCHHHHHHHHHHhcc-------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHH
Confidence 33444445567777777665543 222367777777766443 344444445555555543 23345
Q ss_pred HHHHHHHHHHHHh----------cCchhHHHHHHHHHHHHHHHHhChhhH--hhhhHHHHHhhhcCcch-HH-H-HHHHH
Q 010290 433 FDDKLGALCMQWL----------KDKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVALIKSSRNL-VL-N-SVLSL 497 (513)
Q Consensus 433 ~~~~~~~~l~~~l----------~d~~~~VR~~a~~~l~~l~~~~~~~~~--~~~i~~~L~~~~~~~~~-~~-r-~~~~~ 497 (513)
+...++|.++.++ .+..+.+|..|++.++.+++.++..+. ..++...+.+.+.|++. .. . -++..
T Consensus 255 Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~G 334 (343)
T cd08050 255 YLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVG 334 (343)
T ss_pred hHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHH
Confidence 6667899998876 356789999999999999999998643 46777777776666532 21 2 44566
Q ss_pred HHHhcccc
Q 010290 498 LKNAGIDA 505 (513)
Q Consensus 498 ~~~i~~~~ 505 (513)
+..+|..+
T Consensus 335 L~~lG~~~ 342 (343)
T cd08050 335 LSALGPEA 342 (343)
T ss_pred HHHhCccC
Confidence 66666554
No 193
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.49 E-value=0.09 Score=43.62 Aligned_cols=123 Identities=17% Similarity=0.210 Sum_probs=84.1
Q ss_pred HHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhh---hhhhHHHHHHHhhcCCChhHHHHHHHHHHHH---HHHhC
Q 010290 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLL---ASQLG 429 (513)
Q Consensus 356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~---~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l---~~~~~ 429 (513)
.+.++|.+.+.+.+.+.--|..|...+..+.+.-+.+. +.+++++.+...+++.+..+..+++.++..+ ....|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 36789999999988777777777777777777633333 2356666677778888999999999999888 45556
Q ss_pred hh--hHHHHHHHHHHHHhc-----------CchhHHHHHHHHHHHHHHHHhChhhHh--hhhHH
Q 010290 430 VG--FFDDKLGALCMQWLK-----------DKVYSIRDAAANNVKRLAEEFGPDWAM--QHIVP 478 (513)
Q Consensus 430 ~~--~~~~~~~~~l~~~l~-----------d~~~~VR~~a~~~l~~l~~~~~~~~~~--~~i~~ 478 (513)
+. .+..+++|.+--+.+ ....+++....++|..+-+.-|++-+. ++.+|
T Consensus 116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~nIKy~IP 179 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFINIKYMIP 179 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHHHHHHhCC
Confidence 54 244567776653322 233577787888888777776765432 44444
No 194
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.48 E-value=0.74 Score=42.94 Aligned_cols=125 Identities=13% Similarity=0.095 Sum_probs=85.3
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhhhh---hhhhhh---hhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhH---
Q 010290 363 FLSLLKDEFPDVRLNIISKLDQVNQV---IGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--- 433 (513)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~l~~i~~~---~~~~~~---~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~--- 433 (513)
+.+....+..+|-..|..++..+... +..+.+ .+.+......++.++|+-.|..++..++.+.-.-..-.+
T Consensus 169 ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~ 248 (335)
T PF08569_consen 169 FFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTR 248 (335)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHH
T ss_pred HHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHH
Confidence 56677788888888888887776443 222221 245666788899999999999999999999754222111
Q ss_pred ---HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh--------HhhhhHHHHHhhhcCc
Q 010290 434 ---DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--------AMQHIVPQVALIKSSR 487 (513)
Q Consensus 434 ---~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~--------~~~~i~~~L~~~~~~~ 487 (513)
...-+..++.+++|++.+||..|...+.-+..+-.... ..+.++..|.++..++
T Consensus 249 yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~~~ 313 (335)
T PF08569_consen 249 YISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKDFHTDR 313 (335)
T ss_dssp HTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTTT-
T ss_pred HHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 23467888999999999999999999998877654321 1367777777777665
No 195
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=96.45 E-value=0.45 Score=45.02 Aligned_cols=202 Identities=15% Similarity=0.073 Sum_probs=110.9
Q ss_pred cchHHHHHHhc-CCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhch---hhCHHH
Q 010290 279 SDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP---ILGKDA 354 (513)
Q Consensus 279 ~~ll~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~---~~~~~~ 354 (513)
..++..+..++ ++.++....+++.+|+.-+..++ ....+.++..+.+.++|....+|...+..++.... ......
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~-~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~ 99 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFLS-SELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLK 99 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhC-cCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHH
Confidence 44555555544 45677778888888887776662 23345667777788888888899988888888764 111222
Q ss_pred HHHhHHHHHHHhcC----CCChHHH----HHHHHHHHHhh----hhhhhhh-h--------hh--hHHHHHHHhhcCCCh
Q 010290 355 TIEQLLPIFLSLLK----DEFPDVR----LNIISKLDQVN----QVIGIDL-L--------SQ--SLLPAIVELAEDRHW 411 (513)
Q Consensus 355 ~~~~l~~~l~~~l~----d~~~~vr----~~a~~~l~~i~----~~~~~~~-~--------~~--~l~~~l~~l~~~~~~ 411 (513)
+...++|.+.+.++ .+-+... .++.-.+. +. ...+... . .+ .+-+.+..-+ .+.
T Consensus 100 ~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~~~ 176 (339)
T PF12074_consen 100 FAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--ASE 176 (339)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--CCH
Confidence 33456666666553 3322211 11111122 00 0000000 0 00 1112222221 122
Q ss_pred hHHHHHHHHHHHHHHHhChhh---HHHHHHHHHHHHhcCc--hhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhhc
Q 010290 412 RVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLKDK--VYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKS 485 (513)
Q Consensus 412 ~vR~~~~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~d~--~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~ 485 (513)
..-..++.++..+........ ....+-..++.++.++ .+.||+.|.+++.++....+.. +...++..+.+++.
T Consensus 177 ~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~~~l~ 254 (339)
T PF12074_consen 177 EDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLWKWLS 254 (339)
T ss_pred hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHH
Confidence 233445555555554432211 1234667777788888 8999999999999999876654 44566677666554
No 196
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.067 Score=48.86 Aligned_cols=100 Identities=16% Similarity=0.217 Sum_probs=54.2
Q ss_pred CccHHHHHHHhhcHHHHHHHhChHhh--hhh-hhhhhhhccCCchHHHHHHHHHhhcccccccCch---h-hhhhhHHHH
Q 010290 20 NDDIQLRLNSIRRLSTIARALGEERT--RKE-LIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLE---Y-ANVLLPPLE 92 (513)
Q Consensus 20 ~~d~~~r~~a~~~l~~i~~~~~~~~~--~~~-l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~---~-~~~l~~~l~ 92 (513)
+.+...|..|+..|...+..++.... .-. +.|.+..+++.+.++|..|+..+|..+......+ . ...+-+++.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 44666777777776666655544321 111 2222222566777777777777776665433211 0 112223344
Q ss_pred HhhccchhHHHHHHHHHHHHHHhhcCh
Q 010290 93 TLCTVEETCVRDKAVESLCRIGSQMRE 119 (513)
Q Consensus 93 ~l~~~~~~~vR~~a~~~l~~l~~~~~~ 119 (513)
.+..+.+..+|..|+.+++.++++..+
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~ 200 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKP 200 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcH
Confidence 445566666777777777777766544
No 197
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.43 E-value=0.046 Score=44.96 Aligned_cols=142 Identities=11% Similarity=0.128 Sum_probs=83.5
Q ss_pred HhhhhhhhhhcC-CCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCC-----CChHHHHHHHHHHHHhhhhhhh
Q 010290 318 QHILPCVKELSS-DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD-----EFPDVRLNIISKLDQVNQVIGI 391 (513)
Q Consensus 318 ~~l~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-----~~~~vr~~a~~~l~~i~~~~~~ 391 (513)
+.+++.+..++. +.+|.+|..+++++|.+... ++-. .........+ .............+ . .....
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL-DP~~-----~k~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~e 80 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGAL-DPYK-----HKSIQKSLDSKSSENSNDESTDISLPMMG-I-SPSSE 80 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc-CcHH-----HhcccccCCccccccccccchhhHHhhcc-C-CCchH
Confidence 456666666653 45688999999998888632 1111 1111111111 11111111111000 0 00122
Q ss_pred hhhhhhHHHHHHHhhcCCCh-hHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh
Q 010290 392 DLLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF 467 (513)
Q Consensus 392 ~~~~~~l~~~l~~l~~~~~~-~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~ 467 (513)
+.+...++..+...++|++. ..+..+++++..+.+..|.. .|.++++|.++..+.......|+..+.-++.+....
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~iv 159 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSIV 159 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 44445667777778888753 45567888888887765554 356789999999998777799999888888876643
No 198
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=2.2 Score=47.02 Aligned_cols=75 Identities=23% Similarity=0.369 Sum_probs=54.4
Q ss_pred hhhhHHHHHHHh-hcCCChhHHHHHHHHHHHHHHH--hC-hhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC
Q 010290 394 LSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQ--LG-VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 468 (513)
Q Consensus 394 ~~~~l~~~l~~l-~~~~~~~vR~~~~~~l~~l~~~--~~-~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~ 468 (513)
+...++..+..+ ..+.+|++|.+++..+..+.-. ++ .+.-.+.+-..+..+++|..-+||+.|+.++.-+...-.
T Consensus 1523 l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~ 1601 (1710)
T KOG1851|consen 1523 LQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSK 1601 (1710)
T ss_pred hHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccc
Confidence 345555556533 3456899999999988776543 22 222345688888999999999999999999998877543
No 199
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.48 Score=43.50 Aligned_cols=174 Identities=14% Similarity=0.041 Sum_probs=111.8
Q ss_pred CCchHHHHHHHHHhhcccccccCch--h-hhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHH---HHhhHH-HHH
Q 010290 58 DDDDEVLLAMAEELGVFIPYVGGLE--Y-ANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQD---VVEHFI-PLV 130 (513)
Q Consensus 58 ~~~~~vr~~~~~~l~~~~~~~~~~~--~-~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~---~~~~~~-~~l 130 (513)
.-+.+-+..+-..|..++......+ . ...+.+++. .+++.+..+|..|+.++++.+...++-+ ++...+ .++
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 3466677777777777766443221 1 122344444 8899999999999999999999877632 222333 455
Q ss_pred HHhhcCCCcchhhhHHhhhHhhcCCCCHHHHH----HHHHHHHHHcCC--CchHHHHHHHHhHHHHHHHhhh--hhhHHH
Q 010290 131 KRLAAGEWFTARVSSCGLFHVAYPSAPEALKT----ELRTIYRQLCQD--DMPMVRRSAATNLGKFAATVEA--AHLKSE 202 (513)
Q Consensus 131 ~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~----~l~~~l~~l~~d--~~~~vr~~a~~~l~~l~~~~~~--~~~~~~ 202 (513)
..+..+++.++|..|..+++.++.+..+.... .=...+...+++ .+...++.++..+..+...-.. +.....
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 56677788899999999999999887665221 114566666776 5667777777777777654322 122222
Q ss_pred HHH-HHHHhhhccchhHHHHHHHHHHHhhcc
Q 010290 203 IMS-IFEELTQDDQDSVRLLAVEGCGALGKL 232 (513)
Q Consensus 203 l~~-~l~~l~~d~~~~vr~~a~~~l~~l~~~ 232 (513)
.++ .+..+....+++++..++.++..+...
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 333 233455556677888887777665544
No 200
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.28 E-value=0.84 Score=44.45 Aligned_cols=189 Identities=13% Similarity=0.162 Sum_probs=101.8
Q ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCC------ccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH
Q 010290 242 ILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPE------PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE 314 (513)
Q Consensus 242 l~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~------~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 314 (513)
+...+....+++ +|.--....++++.+....... .+.+.++|.+...|+....+.---+.+-++.+.+.....
T Consensus 72 L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~ 151 (435)
T PF03378_consen 72 LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSS 151 (435)
T ss_dssp HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--
T ss_pred HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 444444444444 4556666666666666553321 123457788887777666566666677777777765523
Q ss_pred HHHHhhhhhhhhhcCCCcHHHH---HHHHHHHHHhchhhCHHHH----HHhHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q 010290 315 LAIQHILPCVKELSSDSSQHVR---SALATVIMGMAPILGKDAT----IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (513)
Q Consensus 315 ~~~~~l~~~l~~~~~d~~~~vr---~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~ 387 (513)
...+.....+..++...-|.-| -+..+.+..+.+.-+.... ...++-++.+++..+..+ ..++..|..+..
T Consensus 152 ~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~ 229 (435)
T PF03378_consen 152 PLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVE 229 (435)
T ss_dssp S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHH
Confidence 3333333333344444444322 3445556655554443332 245677777888876543 447788888888
Q ss_pred hhhhhhhhh---hHHHHHH-HhhcCCChhHHHHHHHHHHHHHHHhChhh
Q 010290 388 VIGIDLLSQ---SLLPAIV-ELAEDRHWRVRLAIIEYIPLLASQLGVGF 432 (513)
Q Consensus 388 ~~~~~~~~~---~l~~~l~-~l~~~~~~~vR~~~~~~l~~l~~~~~~~~ 432 (513)
.++.+.+.+ .++..+. ++-+++....+...+..++.++...|++.
T Consensus 230 ~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~ 278 (435)
T PF03378_consen 230 NLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDF 278 (435)
T ss_dssp HS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHH
Confidence 887765433 3333333 33346677777777777777766666654
No 201
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=96.26 E-value=0.72 Score=45.05 Aligned_cols=76 Identities=17% Similarity=0.091 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH--H--HHHHHHHHHHHcCCC
Q 010290 100 TCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA--L--KTELRTIYRQLCQDD 175 (513)
Q Consensus 100 ~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~--~--~~~l~~~l~~l~~d~ 175 (513)
-..|..|.++|+.++..++.+......-+.+..+.++.+...|..++-++...+...... . ...+.+.+...++++
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 446889999999999999877766666677888889999999999999888777655433 1 246667777777644
No 202
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.10 E-value=3.4 Score=49.46 Aligned_cols=303 Identities=15% Similarity=0.112 Sum_probs=160.1
Q ss_pred hhhhHHHHHhhccchhHHHHHHHHHHHHHHhhc----C-hH-----HHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcC
Q 010290 85 NVLLPPLETLCTVEETCVRDKAVESLCRIGSQM----R-EQ-----DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYP 154 (513)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~----~-~~-----~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~ 154 (513)
..+++.+...+..++..++..+..++..+.... + ++ .+..++++.+..++.++.|..|.+++..+..+++
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 345666666677888999999888888765542 2 11 2334567777788889999999999999999988
Q ss_pred CCCHH----HHHHHHHHHHHHcCCCchHHHH----HHHHhHHHHHHH----hhhh----hhHHHHHHHHHHhhhccchhH
Q 010290 155 SAPEA----LKTELRTIYRQLCQDDMPMVRR----SAATNLGKFAAT----VEAA----HLKSEIMSIFEELTQDDQDSV 218 (513)
Q Consensus 155 ~~~~~----~~~~l~~~l~~l~~d~~~~vr~----~a~~~l~~l~~~----~~~~----~~~~~l~~~l~~l~~d~~~~v 218 (513)
..+.. ...+++..+...+.|-..++.. .+-..+..+... ...+ .....++..+..-+.+++..|
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 88754 3344555555555443222221 222222222222 1111 122334444555567788899
Q ss_pred HHHHHHHHHHhhccCChhhhhhhHHHHHHHhcC---------CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc
Q 010290 219 RLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ---------DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL 289 (513)
Q Consensus 219 r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~---------d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l 289 (513)
|..+...|..+++..+.+ ...++..+.+.+. ...-.+....+.++.... ..+...+
T Consensus 1143 R~~~~~~L~~i~~~s~~~--v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~-~l~p~~f------------ 1207 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGKS--VVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCL-SLGPCLF------------ 1207 (3550)
T ss_pred HHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHH-HcCCccc------------
Confidence 999999999999887543 3344444444431 111112222222222221 2222221
Q ss_pred CCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCH-----HHHHHhHHHHHH
Q 010290 290 RDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK-----DATIEQLLPIFL 364 (513)
Q Consensus 290 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~ 364 (513)
+....-+| -...+..+......+.+ . +.+....-.....-..|.++...+........- ......++..++
T Consensus 1208 ~~~~~l~~--l~~~~~~La~~~~~~~~-~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~f 1283 (3550)
T KOG0889|consen 1208 DFTEELYR--LKRFLIALADAEEDELA-T-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFF 1283 (3550)
T ss_pred CchHHHHH--HHHHHHHhhhhhhhhhh-h-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHH
Confidence 11111111 00111111111111111 0 111111111112345566777766665443221 123466778888
Q ss_pred HhcCCCChHHHHHHHHHHHHhhhh---hhhhhhhhhHHHHHHHhh
Q 010290 365 SLLKDEFPDVRLNIISKLDQVNQV---IGIDLLSQSLLPAIVELA 406 (513)
Q Consensus 365 ~~l~d~~~~vr~~a~~~l~~i~~~---~~~~~~~~~l~~~l~~l~ 406 (513)
+.+..+.+++...+..++..+... ++.+.++...-|.+..+.
T Consensus 1284 k~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~ 1328 (3550)
T KOG0889|consen 1284 KSLYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLS 1328 (3550)
T ss_pred HHHcCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhh
Confidence 888888889988888888777543 456666555556666653
No 203
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.09 E-value=1.5 Score=42.65 Aligned_cols=191 Identities=14% Similarity=0.197 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHcCCC-chHHHHHHHHhHHHHHHHhhh---h---hhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccC
Q 010290 161 KTELRTIYRQLCQDD-MPMVRRSAATNLGKFAATVEA---A---HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL 233 (513)
Q Consensus 161 ~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~---~---~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~ 233 (513)
.+.+...+...+++| +|.--....++++.+.+.... + .+.+.++|.+...++.+-.+.--.+.+.++.+.+..
T Consensus 69 l~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~ 148 (435)
T PF03378_consen 69 LQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELR 148 (435)
T ss_dssp HHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344555555566665 678888888888888876542 2 467789999999998776677777788888887776
Q ss_pred Chhhh---hhhHHHHHHHhcCCCCHHHHH---HHHHHHHHHHHHhCCCc----cccchHHHHHHhcCCCcHHHHHHHHHh
Q 010290 234 EPQDC---VAHILPVIVNFSQDKSWRVRY---MVANQLYELCEAVGPEP----TRSDVVPAYVRLLRDNEAEVRIAAAGK 303 (513)
Q Consensus 234 ~~~~~---~~~l~~~l~~~~~d~~~~vr~---~~~~~l~~l~~~~~~~~----~~~~ll~~l~~~l~d~~~~vr~~a~~~ 303 (513)
+.... ...++|.+. ...-|.-|. +.++.|..+...-+... ..+.++-.+.+++.....+ ..+...
T Consensus 149 ~~~~~p~~y~~L~~~Ll---~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~L 223 (435)
T PF03378_consen 149 PSSPLPDAYKQLFPPLL---SPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDL 223 (435)
T ss_dssp S--S--TTTGGGHHHHT---SGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHH
T ss_pred CCCCCcHHHHHHHHHHc---CcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHH
Confidence 52222 223444443 333443222 23334444433333222 2345677777888765433 457788
Q ss_pred HHHHHhhhChHH---HHHhhhhhhhh-hcCCCcHHHHHHHHHHHHHhchhhCHHHHH
Q 010290 304 VTKICRILNPEL---AIQHILPCVKE-LSSDSSQHVRSALATVIMGMAPILGKDATI 356 (513)
Q Consensus 304 l~~~~~~~~~~~---~~~~l~~~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 356 (513)
|..+...++.+. +.+.++..+.. +.+.+........+..++.++-..|.+...
T Consensus 224 L~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li 280 (435)
T PF03378_consen 224 LESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLI 280 (435)
T ss_dssp HHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 888888887753 33334444433 334566777777777777777777766543
No 204
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.05 E-value=2.4 Score=45.15 Aligned_cols=135 Identities=20% Similarity=0.154 Sum_probs=101.4
Q ss_pred hhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhh----hhhhhhhhHHH
Q 010290 325 KELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----GIDLLSQSLLP 400 (513)
Q Consensus 325 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~----~~~~~~~~l~~ 400 (513)
.....|..+.+|...++.++..++..+.-+..+.++.++.=.|.|.+..||..++.+|..+.+.- +.+.+.+....
T Consensus 293 VHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~ 372 (1048)
T KOG2011|consen 293 VHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKD 372 (1048)
T ss_pred eeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 34457889999999999999999999888888888888888899999999999999999998761 12234455666
Q ss_pred HHHHhh-cCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 010290 401 AIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKR 462 (513)
Q Consensus 401 ~l~~l~-~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~ 462 (513)
.+.++. .|-+..||...+..+-.... .+.+...=+..+.+++.|.++.|+.+|...+..
T Consensus 373 RIVeMadrd~~~~Vrav~L~~~~~~~~---~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 373 RIVEMADRDRNVSVRAVGLVLCLLLSS---SGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHhc---ccccChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 777777 45567788777666544422 222222334556789999999999999888744
No 205
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=95.99 E-value=0.53 Score=41.11 Aligned_cols=134 Identities=17% Similarity=0.187 Sum_probs=94.1
Q ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCC-CCHHHHHHH-HHHHHHHHHHhCCCccc
Q 010290 201 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMV-ANQLYELCEAVGPEPTR 278 (513)
Q Consensus 201 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~~~vr~~~-~~~l~~l~~~~~~~~~~ 278 (513)
+........+..++..+.|..|+..+......... ..++.+...+.+ ++|.+.... ...++.+... .
T Consensus 50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~-----~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~------~ 118 (213)
T PF08713_consen 50 EELYELADELWESGYREERYLALLILDKRRKKLTE-----EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKK------H 118 (213)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--H-----HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHH------H
T ss_pred hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhH-----HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHh------h
Confidence 44556666778888888888888888765543222 245666666654 588888777 4445665443 2
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchh
Q 010290 279 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI 349 (513)
Q Consensus 279 ~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 349 (513)
+...+.+.+.+++.++-+|.+++..+...... ...+.++..+...+.|+++.||.++..+|..++..
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 56788888889999999999888776555443 22356667777788899999999999999988865
No 206
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=3.7 Score=45.35 Aligned_cols=157 Identities=14% Similarity=0.121 Sum_probs=100.7
Q ss_pred HHHHhhhhhhhh-hcCCCcHHHHHHHHHHHHHhc--hhhC-HHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhh
Q 010290 315 LAIQHILPCVKE-LSSDSSQHVRSALATVIMGMA--PILG-KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 390 (513)
Q Consensus 315 ~~~~~l~~~l~~-~~~d~~~~vr~~~~~~l~~l~--~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~ 390 (513)
.....++..+.. ...+.+|++|.+++..+..+. ..++ .+.-.+.+...+...++|.+.+||..|+.+|..+...-.
T Consensus 1522 ~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~ 1601 (1710)
T KOG1851|consen 1522 HLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSK 1601 (1710)
T ss_pred hhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccc
Confidence 344555566653 345678999999988887654 2233 222346788899999999999999999999998866422
Q ss_pred hhhhhhhHHHHHHHh-hcCCChhHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh
Q 010290 391 IDLLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF 467 (513)
Q Consensus 391 ~~~~~~~l~~~l~~l-~~~~~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~ 467 (513)
.....+..-+.-... ..+.+...+.+++..+++++-.++-. .+..+.+..+-.+.+++ ..++.++-+++...-+..
T Consensus 1602 ~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth 1680 (1710)
T KOG1851|consen 1602 FQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTH 1680 (1710)
T ss_pred cccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHh
Confidence 111111111111111 22345566678888888887665432 13334444444555666 789999999999988887
Q ss_pred ChhhH
Q 010290 468 GPDWA 472 (513)
Q Consensus 468 ~~~~~ 472 (513)
..+|.
T Consensus 1681 ~D~W~ 1685 (1710)
T KOG1851|consen 1681 ADTWR 1685 (1710)
T ss_pred hhhhh
Confidence 77764
No 207
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.83 E-value=0.074 Score=43.70 Aligned_cols=130 Identities=17% Similarity=0.238 Sum_probs=87.8
Q ss_pred cchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH-----HHHHHHHHHHHH
Q 010290 97 VEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA-----LKTELRTIYRQL 171 (513)
Q Consensus 97 ~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~-----~~~~l~~~l~~l 171 (513)
...+++|..+.-++.++. ...++...+.+..++.....+........++..+..+++..++- ..+.+++.+..+
T Consensus 16 ~~~~~~r~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLL-DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp TTSCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 456778998888888885 33445566667778877776666667777888888887776554 335567777777
Q ss_pred cC--CCchHHHHHHHHhHHHHHHHhh-hhhhHHHHHHHHHHhhh-ccchh-HHHHHHHHHH
Q 010290 172 CQ--DDMPMVRRSAATNLGKFAATVE-AAHLKSEIMSIFEELTQ-DDQDS-VRLLAVEGCG 227 (513)
Q Consensus 172 ~~--d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~l~~-d~~~~-vr~~a~~~l~ 227 (513)
+. .++..+...+++.+..-+..-. .....+..++.|.+..+ ++++. +|..|+-+|.
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 77 6778888888888876553221 13455677888888885 44454 6777766654
No 208
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=1.8 Score=43.19 Aligned_cols=72 Identities=19% Similarity=0.189 Sum_probs=45.5
Q ss_pred CCCCCCcHHH-HHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhhccCCchHHHHHHHHHhhcccc
Q 010290 4 IDEPLYPIAV-LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIP 76 (513)
Q Consensus 4 ~~~~~~~i~~-l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~ 76 (513)
+.|++.|... +.+++++++...|..|+-.|......-..++....|.|.+.. .+...+|...++-.||-+.-
T Consensus 446 v~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~lL~Pi~~d-~~~~~ev~~~aslsLG~Ifv 518 (878)
T KOG2005|consen 446 VFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLELLSPIMFD-TKSPMEVVAFASLSLGMIFV 518 (878)
T ss_pred cccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHHHHhHHhcC-CCCchhHHHHHHhhcceeEE
Confidence 3456777544 557799999999999998876554433334444445555432 12235688888888886543
No 209
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=95.79 E-value=1.5 Score=40.23 Aligned_cols=177 Identities=18% Similarity=0.133 Sum_probs=126.1
Q ss_pred HHHHHHhcCCC-cHHHHHHHHHhHHHHHhhhChHHHHHh---hhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHH-
Q 010290 282 VPAYVRLLRDN-EAEVRIAAAGKVTKICRILNPELAIQH---ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI- 356 (513)
Q Consensus 282 l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~---l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~- 356 (513)
-.-+.+++.=. ...|-..|++....+.+.+|++.+.+. ..|-+..++...+..||...+..+....-.+|.. ..
T Consensus 56 ~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~-L~p 134 (307)
T PF04118_consen 56 SKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPA-LRP 134 (307)
T ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHH-HHH
Confidence 34444455432 357899999999999999998865443 3466667778888999999999998877667763 33
Q ss_pred --HhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhC-----
Q 010290 357 --EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----- 429 (513)
Q Consensus 357 --~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~----- 429 (513)
..++..++..+.|+..++...+...+..+...+|.+.+...+.-.+. .+..+|..|+..+..-.....
T Consensus 135 ~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~~ 209 (307)
T PF04118_consen 135 CLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDELS 209 (307)
T ss_pred HHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCcccccccc
Confidence 34455556677889999999999999999999888754444444333 467789888888765544333
Q ss_pred -hh----hH----HHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 010290 430 -VG----FF----DDKLGALCMQWLKDKVYSIRDAAANNVKRLA 464 (513)
Q Consensus 430 -~~----~~----~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~ 464 (513)
.. .. ..-++..+...+.|++.-|+..++..+-.-.
T Consensus 210 ~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~ 253 (307)
T PF04118_consen 210 LSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHF 253 (307)
T ss_pred cchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhC
Confidence 00 00 1237788888999999999999988875543
No 210
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.68 E-value=0.3 Score=40.60 Aligned_cols=113 Identities=16% Similarity=0.203 Sum_probs=71.8
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH---HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHh---chhhCH
Q 010290 279 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGM---APILGK 352 (513)
Q Consensus 279 ~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l---~~~~~~ 352 (513)
+.++|.+...+.+.+.-.|..|.+.+..+.+.-+.+ ...+.+++.+...++.+++.|..+++.++..+ .+..|.
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 568888888888888888888888888888773333 23445556666677888899999999998888 555554
Q ss_pred HHH--HHhHHHHHHHhcCC-----------CChHHHHHHHHHHHHhhhhhhh
Q 010290 353 DAT--IEQLLPIFLSLLKD-----------EFPDVRLNIISKLDQVNQVIGI 391 (513)
Q Consensus 353 ~~~--~~~l~~~l~~~l~d-----------~~~~vr~~a~~~l~~i~~~~~~ 391 (513)
... ..+++|.+--+.+. ....++..+.++|..+-..-|.
T Consensus 117 aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~ 168 (183)
T PF10274_consen 117 ALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGP 168 (183)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcCh
Confidence 432 24455554422211 2244555555555555444443
No 211
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.67 E-value=0.25 Score=46.46 Aligned_cols=138 Identities=13% Similarity=0.188 Sum_probs=82.3
Q ss_pred HHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhcc-------chhHHHHHHHHHHHhhcc--CC
Q 010290 164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-------QDSVRLLAVEGCGALGKL--LE 234 (513)
Q Consensus 164 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~-------~~~vr~~a~~~l~~l~~~--~~ 234 (513)
.+..+.+.+-+.+...|..+...|.. +.-...++|+|..++.+. +...-...++.+.++... +.
T Consensus 179 yf~~It~a~~~~~~~~r~~aL~sL~t-------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~ 251 (343)
T cd08050 179 YFEEITEALVGSNEEKRREALQSLRT-------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLH 251 (343)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhcc-------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 34444555555666777666555443 333556777777766543 233333444555555543 33
Q ss_pred hhhhhhhHHHHHHHhc----------CCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCc--HHHHHHH
Q 010290 235 PQDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNE--AEVRIAA 300 (513)
Q Consensus 235 ~~~~~~~l~~~l~~~~----------~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~d~~--~~vr~~a 300 (513)
-+.+...++|.+..++ .+..|.+|..++..++.++..++... ....+...+.+.+.|+. ....-.|
T Consensus 252 le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGA 331 (343)
T cd08050 252 LEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGA 331 (343)
T ss_pred hHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHH
Confidence 3556666777776543 24679999999999999999888753 23445555555555543 2336666
Q ss_pred HHhHHHHH
Q 010290 301 AGKVTKIC 308 (513)
Q Consensus 301 ~~~l~~~~ 308 (513)
+..|..++
T Consensus 332 i~GL~~lG 339 (343)
T cd08050 332 IVGLSALG 339 (343)
T ss_pred HHHHHHhC
Confidence 66666554
No 212
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.64 E-value=0.072 Score=43.85 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=13.8
Q ss_pred HHHHHHHHhhhc-cchhHHHHHHHHHHHhh
Q 010290 202 EIMSIFEELTQD-DQDSVRLLAVEGCGALG 230 (513)
Q Consensus 202 ~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~ 230 (513)
.+++.+.++++. .++.+|..+++.+|.++
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilG 39 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILG 39 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 444444444432 23455555555555544
No 213
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.62 E-value=1.1 Score=41.16 Aligned_cols=39 Identities=18% Similarity=0.095 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhh
Q 010290 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH 198 (513)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~ 198 (513)
++.-++|.++.+++|.++.+|..++.++..+...++...
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~ 154 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE 154 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh
Confidence 677889999999999999999999999999998776543
No 214
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=95.57 E-value=3.1 Score=42.20 Aligned_cols=130 Identities=12% Similarity=0.132 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHHHHHHhhcChHHHH-hhHHHHHHHhhcCCCcchhhhHHhhhHhhc-CCCCHHHHHHHHHHHHHH-----
Q 010290 99 ETCVRDKAVESLCRIGSQMREQDVV-EHFIPLVKRLAAGEWFTARVSSCGLFHVAY-PSAPEALKTELRTIYRQL----- 171 (513)
Q Consensus 99 ~~~vR~~a~~~l~~l~~~~~~~~~~-~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~-~~~~~~~~~~l~~~l~~l----- 171 (513)
++++-...+++++.+.+-++-.-+. +..++++..+.. ....|.+||.++-+++ +.+.+..+-.+++.+.+.
T Consensus 206 npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg 283 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFG 283 (980)
T ss_pred CchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHh
Confidence 7778888888888888777654433 346777776655 4678999999887665 566665444444444221
Q ss_pred --cCC--CchHHHHHHHHhHHHHHHH-------h----hh---hh---hHHHHHHHHHHhhhccchhHHHHHHHHHHHhh
Q 010290 172 --CQD--DMPMVRRSAATNLGKFAAT-------V----EA---AH---LKSEIMSIFEELTQDDQDSVRLLAVEGCGALG 230 (513)
Q Consensus 172 --~~d--~~~~vr~~a~~~l~~l~~~-------~----~~---~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~ 230 (513)
-.| .++++-....+.+..++-. . .+ +. ..-.++|++.+.+.|+.+++-......+....
T Consensus 284 ~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl 363 (980)
T KOG2021|consen 284 YHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYL 363 (980)
T ss_pred hhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHH
Confidence 122 3455554444444433211 1 00 11 11237888888999888888777766655443
No 215
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=95.52 E-value=1.3 Score=40.66 Aligned_cols=128 Identities=14% Similarity=0.001 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHHHHHHhhcChHHHHhh---HHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH---HHHHHHHHHHHHc
Q 010290 99 ETCVRDKAVESLCRIGSQMREQDVVEH---FIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLC 172 (513)
Q Consensus 99 ~~~vR~~a~~~l~~l~~~~~~~~~~~~---~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~---~~~~l~~~l~~l~ 172 (513)
...|-..|+++...+.+.++++..... ..|-+..+....+..+|.....++...+-..++. ....++..++..+
T Consensus 68 PsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGL 147 (307)
T PF04118_consen 68 PSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGL 147 (307)
T ss_pred ChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccc
Confidence 456777889999999988888766554 3345555555556788888888887666667776 3455566666677
Q ss_pred CCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhc
Q 010290 173 QDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGK 231 (513)
Q Consensus 173 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~ 231 (513)
+|++.++...+...+..+...++++.+++.++-.+. .++.+|..|+..+..-..
T Consensus 148 ede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~ 201 (307)
T PF04118_consen 148 EDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLP 201 (307)
T ss_pred ccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCC
Confidence 889999999999999999999998877766655433 467889998887765443
No 216
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=95.46 E-value=3.2 Score=41.62 Aligned_cols=85 Identities=16% Similarity=0.239 Sum_probs=59.5
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHhh-cCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHH----HHHhcCchhHHHHH
Q 010290 381 KLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC----MQWLKDKVYSIRDA 455 (513)
Q Consensus 381 ~l~~i~~~~~~~~~~~~l~~~l~~l~-~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l----~~~l~d~~~~VR~~ 455 (513)
.++.+...+..+.+ .+++-.+..++ ..+...+|-++++.++.+++..-++...+.+.|.+ -.++.|+++.|+..
T Consensus 464 l~~~~~~~l~~~~i-~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ 542 (559)
T PF14868_consen 464 LLSFFIQLLDPQLI-EQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQH 542 (559)
T ss_pred HHHHHHHhcChHHH-HHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHH
Confidence 34444444454444 55666666666 44555699999999999988765554444455544 44789999999999
Q ss_pred HHHHHHHHHHH
Q 010290 456 AANNVKRLAEE 466 (513)
Q Consensus 456 a~~~l~~l~~~ 466 (513)
|+++++.+++.
T Consensus 543 ALeAF~~FAe~ 553 (559)
T PF14868_consen 543 ALEAFGQFAER 553 (559)
T ss_pred HHHHHHHHhcc
Confidence 99999998874
No 217
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=3.8 Score=42.42 Aligned_cols=162 Identities=11% Similarity=0.119 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhc-----CCCCHHHHHHHHHHHHH
Q 010290 198 HLKSEIMSIFEELTQDDQ-----DSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFS-----QDKSWRVRYMVANQLYE 267 (513)
Q Consensus 198 ~~~~~l~~~l~~l~~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-----~d~~~~vr~~~~~~l~~ 267 (513)
...+.+...+.+++.|.+ +..-.+.+.++..+++..+... ...+|.+.+.+ +-.++..-..+...+|.
T Consensus 458 ~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs 535 (982)
T KOG2022|consen 458 GLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSASIKLSAPNPQLLSTSSDLIGS 535 (982)
T ss_pred HHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhccccccccCChhHHHHHHHHHHH
Confidence 334455566666666655 5667778888899998887643 22344444432 23467788888999999
Q ss_pred HHHHhCCCcc-ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH--HHHHhhhhhhhhhcCC--CcHHHHHHHHHH
Q 010290 268 LCEAVGPEPT-RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSD--SSQHVRSALATV 342 (513)
Q Consensus 268 l~~~~~~~~~-~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~d--~~~~vr~~~~~~ 342 (513)
++..++.+.. .+..+|.+++.+..+. .-..+...+..+|+.+..+ .+...++.....++.. -....|..+..+
T Consensus 536 ~s~~l~e~P~~ln~sl~~L~~~Lh~sk--~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~s 613 (982)
T KOG2022|consen 536 LSNWLGEHPMYLNPSLPLLFQGLHNSK--ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKS 613 (982)
T ss_pred HHHHHhcCCcccCchHHHHHHHhcCch--HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHH
Confidence 9999887653 4678899998887443 3345666688888876432 2223333333333322 235678888999
Q ss_pred HHHhchhhCHHHHHHhHHHHH
Q 010290 343 IMGMAPILGKDATIEQLLPIF 363 (513)
Q Consensus 343 l~~l~~~~~~~~~~~~l~~~l 363 (513)
+|.+......+....+++..+
T Consensus 614 IGyvls~~~pEe~~kyl~~li 634 (982)
T KOG2022|consen 614 IGYVLSRLKPEEIPKYLMKLI 634 (982)
T ss_pred HHHHHHhccHHhHHHHHHHHH
Confidence 999888777665555444433
No 218
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=95.45 E-value=0.52 Score=41.15 Aligned_cols=130 Identities=16% Similarity=0.144 Sum_probs=83.2
Q ss_pred HHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCC-CchHHHHHHHH-hHHHHHHHhhhhhhHHHHH
Q 010290 127 IPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQD-DMPMVRRSAAT-NLGKFAATVEAAHLKSEIM 204 (513)
Q Consensus 127 ~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d-~~~~vr~~a~~-~l~~l~~~~~~~~~~~~l~ 204 (513)
..+...+..++....|..++.++.......+.. .++.+...+.+ ++|.+-...|. .++.+.... +...
T Consensus 53 ~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~~----~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~~~~ 122 (213)
T PF08713_consen 53 YELADELWESGYREERYLALLILDKRRKKLTEE----DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------PEAL 122 (213)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHCGGG--HH----HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------GGHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHhHHHhhhhhHH----HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------HHHH
Confidence 345556666666677777777765544333322 34445554543 46766655533 334443211 4567
Q ss_pred HHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 010290 205 SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (513)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 270 (513)
+.+.+...+++..+|..++.++...... ...+.++..+.....|++..||.++..+|..++.
T Consensus 123 ~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~ 184 (213)
T PF08713_consen 123 ELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGK 184 (213)
T ss_dssp HHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 7788889999999999888777554443 3345678888888889999999999988888764
No 219
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=3.5 Score=41.86 Aligned_cols=329 Identities=12% Similarity=0.080 Sum_probs=175.4
Q ss_pred HhChHhhhhhhhhhhhh-c-----cC---CchHHHHHHHHHhhcccccccC-----chhhhhhhHHHHHhhccchhHHHH
Q 010290 39 ALGEERTRKELIPFLSE-N-----ND---DDDEVLLAMAEELGVFIPYVGG-----LEYANVLLPPLETLCTVEETCVRD 104 (513)
Q Consensus 39 ~~~~~~~~~~l~~~l~~-~-----~~---~~~~vr~~~~~~l~~~~~~~~~-----~~~~~~l~~~l~~l~~~~~~~vR~ 104 (513)
.-.++.+..-+++++.. + .+ +++.....+.+.+..+...... ......+.+.+.-...+..-..|.
T Consensus 399 sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~S 478 (970)
T COG5656 399 SKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKS 478 (970)
T ss_pred cccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHH
Confidence 33456666777787776 3 22 2222333333333333332211 123344455444444666677888
Q ss_pred HHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCC--HH---HHHHHHHHHHHHcCCCchHH
Q 010290 105 KAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAP--EA---LKTELRTIYRQLCQDDMPMV 179 (513)
Q Consensus 105 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~--~~---~~~~l~~~l~~l~~d~~~~v 179 (513)
.|++.+..+...++...+.........++.++.+-.++..|+.++..+..+.. +. +.+..++.++.+.++-+..+
T Consensus 479 race~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~ 558 (970)
T COG5656 479 RACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDP 558 (970)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchH
Confidence 99999999977777777777777777777888888899999988886664432 22 66777888888887766655
Q ss_pred HHHHHHhH-HHHHHHhhh--hhhHHHHHHHH----HHhhhcc------chhHHHHHHHHHHHhh---ccCChhh-----h
Q 010290 180 RRSAATNL-GKFAATVEA--AHLKSEIMSIF----EELTQDD------QDSVRLLAVEGCGALG---KLLEPQD-----C 238 (513)
Q Consensus 180 r~~a~~~l-~~l~~~~~~--~~~~~~l~~~l----~~l~~d~------~~~vr~~a~~~l~~l~---~~~~~~~-----~ 238 (513)
-..+.+.+ +.+...+.| ......+...+ +.+...+ .++-..+|...|..+. -.+.... .
T Consensus 559 LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~l 638 (970)
T COG5656 559 LSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYL 638 (970)
T ss_pred HHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 54444432 223333222 11222333322 2233222 1233334433333332 2222211 2
Q ss_pred hhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC-CccccchHHHHHHhcCCCcH-HHHHHHHHhHHHHHhhhChH--
Q 010290 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EPTRSDVVPAYVRLLRDNEA-EVRIAAAGKVTKICRILNPE-- 314 (513)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-~~~~~~ll~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~-- 314 (513)
...+.|.+.-.+.+.-...=..++..+....-.... ......+...+.+++.++.. ..-..+.-++..+...-+.+
T Consensus 639 e~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~ 718 (970)
T COG5656 639 EVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFM 718 (970)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccc
Confidence 233566666666665555555555555443322111 11123455555666666663 55666777777777543222
Q ss_pred ---HHHHhhhhhhhhhcCCCc--HHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcC
Q 010290 315 ---LAIQHILPCVKELSSDSS--QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK 368 (513)
Q Consensus 315 ---~~~~~l~~~l~~~~~d~~--~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 368 (513)
.+.+.+.......+.+.. -.=+..+++.+..++-..+.+. .++.+|.+.+..+
T Consensus 719 ~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~L-l~qy~plfi~vag 776 (970)
T COG5656 719 DAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDEL-LSQYLPLFISVAG 776 (970)
T ss_pred cccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchh-HHhhhHHHHHHHh
Confidence 233334444444443322 2456778888888876666543 3446777666543
No 220
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.42 E-value=0.62 Score=43.48 Aligned_cols=126 Identities=18% Similarity=0.122 Sum_probs=95.5
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhh--hhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhh---HH
Q 010290 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FD 434 (513)
Q Consensus 360 ~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~---~~ 434 (513)
+.-++..++..+.+||..|...+..+....... .....+++.+..+..|.+..+|....+.+..++....++. +.
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 444566678889999999999988887763222 1234677778888899999999999999988777655543 33
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHh--hhhHHHHHhhhc
Q 010290 435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM--QHIVPQVALIKS 485 (513)
Q Consensus 435 ~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~--~~i~~~L~~~~~ 485 (513)
.-++|++...+..-.++||.-++..+..+...+++.+.. ..+++...++.+
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~ 192 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVIS 192 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 457888888999999999999999999999999988764 224444444443
No 221
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.34 E-value=2.5 Score=39.74 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHH
Q 010290 105 KAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184 (513)
Q Consensus 105 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~ 184 (513)
.++.++..+.+....++...+++-++..+...+..+++ ++.... ...+......++.++.+.++.+-....
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~-----lf~~~a----~~~k~~~~~~fl~ll~r~d~~iv~~~~ 135 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVD-----LFHDYA----HKLKRTEWLSFLNLLNRQDTFIVEMSF 135 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHH-----HHHHHH----HhhhccchHHHHHHHhcCChHHHHHHH
Confidence 55667777777777777777777777666554332221 111100 011223356778888888888877677
Q ss_pred HhHHHHHHHhhh---hhhHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhhcc
Q 010290 185 TNLGKFAATVEA---AHLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKL 232 (513)
Q Consensus 185 ~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~ 232 (513)
..+..++..-.. ..........+...++. .+...+..+++||..+...
T Consensus 136 ~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~ 187 (442)
T KOG2759|consen 136 RILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV 187 (442)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC
Confidence 777766653221 11233445555556655 5666778888888877754
No 222
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=95.30 E-value=0.72 Score=45.05 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=56.8
Q ss_pred cchhhhHHhhhHhhcCCCCHHHHHHHHH-HHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhh---HHHHHHHHHHhhh
Q 010290 139 FTARVSSCGLFHVAYPSAPEALKTELRT-IYRQLCQDDMPMVRRSAATNLGKFAATVEAAHL---KSEIMSIFEELTQ 212 (513)
Q Consensus 139 ~~~R~~~~~~l~~~~~~~~~~~~~~l~~-~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~l~~ 212 (513)
.+.|..++.+++.+...++......+.. .+...+++++..-|..++-.+..+++....... .+.+.+.|...+.
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~ 178 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILE 178 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHc
Confidence 5679999999999999998887777776 688999999988899999999999987653211 2355555555555
No 223
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=4.3 Score=42.06 Aligned_cols=174 Identities=14% Similarity=0.101 Sum_probs=97.5
Q ss_pred HHHHHHHHhhcccccccCchhhhhhhHHHHHhhccch--h---HHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHh-hcC
Q 010290 63 VLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEE--T---CVRDKAVESLCRIGSQMREQDVVEHFIPLVKRL-AAG 136 (513)
Q Consensus 63 vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~---~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l-~~d 136 (513)
-|+..+..+......+| +...+.+...+.++..+.+ + ..-+.-+.++..++..++... ..-+|.+.+. ..-
T Consensus 440 YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~asi 516 (982)
T KOG2022|consen 440 YRKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSASI 516 (982)
T ss_pred HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhcccc
Confidence 45555555544444444 3444555556666665443 3 333344566666777665431 1123333332 211
Q ss_pred ----CCcchhhhHHhhhHhhcCCCCHH--HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhh--hhHHHHHHHHH
Q 010290 137 ----EWFTARVSSCGLFHVAYPSAPEA--LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA--HLKSEIMSIFE 208 (513)
Q Consensus 137 ----~~~~~R~~~~~~l~~~~~~~~~~--~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~ 208 (513)
.++..-.++...++..+..++++ +.+.-++.+.+.+..+ +--.++...+..+++.+..+ .....++....
T Consensus 517 k~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~s--k~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~ 594 (982)
T KOG2022|consen 517 KLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNS--KESEQAISTLKTLCETCPESLDPYADQFSAVCY 594 (982)
T ss_pred ccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCc--hHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHH
Confidence 13344445667777777776666 6777788888888644 33345666688888876542 11222333333
Q ss_pred Hhhh--ccchhHHHHHHHHHHHhhccCChhhhhhh
Q 010290 209 ELTQ--DDQDSVRLLAVEGCGALGKLLEPQDCVAH 241 (513)
Q Consensus 209 ~l~~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 241 (513)
+.+. .-.+..|...++++|.+.....++.....
T Consensus 595 e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~ky 629 (982)
T KOG2022|consen 595 EVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKY 629 (982)
T ss_pred HHhcccccCchHHHHHHHHHHHHHHhccHHhHHHH
Confidence 3332 23467899999999999988776655444
No 224
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.17 E-value=3.5 Score=40.37 Aligned_cols=312 Identities=14% Similarity=0.101 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHcCCCc---hHHHHHHHHhHHHHHH--HhhhhhhHH--HHHHHHHHhhhccchhHHHHHHHHHHHhhccC
Q 010290 161 KTELRTIYRQLCQDDM---PMVRRSAATNLGKFAA--TVEAAHLKS--EIMSIFEELTQDDQDSVRLLAVEGCGALGKLL 233 (513)
Q Consensus 161 ~~~l~~~l~~l~~d~~---~~vr~~a~~~l~~l~~--~~~~~~~~~--~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~ 233 (513)
...++..+..++++.+ ..+-..+.++++.... .++++.+.. .++......++ .+..-..|.+++..+....
T Consensus 151 ~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~--~~~lhe~At~cic~ll~~~ 228 (559)
T KOG2081|consen 151 VSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLS--DDELHEEATECICALLYCS 228 (559)
T ss_pred HHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcc--cchhhHHHHHHHHHHHHHh
Confidence 3445666666666543 4556666666666555 334433322 34455555555 3445556666665554432
Q ss_pred Ch-hh---hhh------hHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhCCCcc--ccc---hHHHHHHhcCCCcHHHH
Q 010290 234 EP-QD---CVA------HILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPT--RSD---VVPAYVRLLRDNEAEVR 297 (513)
Q Consensus 234 ~~-~~---~~~------~l~~~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~---ll~~l~~~l~d~~~~vr 297 (513)
.. +. +.. .++|.... .....+..-+.+.++.+..+++.+-.... .+. ++..++-.-..++.+|-
T Consensus 229 ~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evi 308 (559)
T KOG2081|consen 229 LDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVI 308 (559)
T ss_pred hhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhh
Confidence 21 11 111 12222222 22345566777888888888776532111 123 33444445567777888
Q ss_pred HHHHHhHHHHHhhhC---hHHHHHhhhhhhhhhc----------C---------CCcHHHHHHHHHHHHHhchhhCHHHH
Q 010290 298 IAAAGKVTKICRILN---PELAIQHILPCVKELS----------S---------DSSQHVRSALATVIMGMAPILGKDAT 355 (513)
Q Consensus 298 ~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~~----------~---------d~~~~vr~~~~~~l~~l~~~~~~~~~ 355 (513)
+.....+-.+.+.+. .+.....+-|++.+++ . +.-...|..+...+..++-..|.+..
T Consensus 309 e~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~ 388 (559)
T KOG2081|consen 309 EASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDEC 388 (559)
T ss_pred hhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 888777777666442 1112222223222221 1 12246888888888888877776544
Q ss_pred HHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcC--CChhHHHHHHHHHHHHHHHhChh-h
Q 010290 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVG-F 432 (513)
Q Consensus 356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~--~~~~vR~~~~~~l~~l~~~~~~~-~ 432 (513)
...+.-.+.. +...++.-++++-.+..+++.+..+. +.++|.+.+++.+ ....+|..++..++.+.+-.... .
T Consensus 389 lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e--~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~ 464 (559)
T KOG2081|consen 389 LKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEE--NTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPE 464 (559)
T ss_pred HHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccc--cchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcH
Confidence 3322222222 35678899999999999988876653 5777777776543 23459999999999998876543 2
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHh
Q 010290 433 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVAL 482 (513)
Q Consensus 433 ~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~ 482 (513)
+.+-+..++...+.+.. .--+++.++..++....... ...+|.+..
T Consensus 465 ~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~--~~l~~~~~~ 510 (559)
T KOG2081|consen 465 LLEPVLRYIRQGLQLKR--LASAAALAFHRICSACRVQM--TCLIPSLLE 510 (559)
T ss_pred HHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHh--hhhhHHHHH
Confidence 33445666666666655 55666667777777655433 334444443
No 225
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.15 E-value=3.2 Score=39.80 Aligned_cols=232 Identities=8% Similarity=-0.010 Sum_probs=124.8
Q ss_pred hhHHHHHHHHHHHHHHh------hcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhh-cCCCCHH-----HHHHHHH
Q 010290 99 ETCVRDKAVESLCRIGS------QMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVA-YPSAPEA-----LKTELRT 166 (513)
Q Consensus 99 ~~~vR~~a~~~l~~l~~------~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~-~~~~~~~-----~~~~l~~ 166 (513)
+..+-..|+++++.+.. .++.+... .++........+++.. +..+...+..+ .+.++.. ....++.
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~-~~i~~~i~~l~~~~~~-K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~ 136 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFAS-FIIDHSIESLQNPNSP-KSICTHYLWCLSDQKFSPKIMTSDRVERLLA 136 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHH-HHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCCCcccchhhHHHHHH
Confidence 45566777888877653 34444333 2333333333333211 11111112111 2333333 3444555
Q ss_pred HHHHHcC-CCchHHHHHHHHhHHHHHHHhhhhhhH--HHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHH
Q 010290 167 IYRQLCQ-DDMPMVRRSAATNLGKFAATVEAAHLK--SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHIL 243 (513)
Q Consensus 167 ~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 243 (513)
.+...-+ =++..+-.....++..+....+..... ..=+|.+...+-+....+|..|+..+..+...++++......+
T Consensus 137 ~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~ 216 (372)
T PF12231_consen 137 ALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSV 216 (372)
T ss_pred HHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence 5555443 345566566666666666655542211 1223444444556677889988888877777777654433333
Q ss_pred H-HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhh
Q 010290 244 P-VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILP 322 (513)
Q Consensus 244 ~-~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~ 322 (513)
. .+.....+ . .+....++.+..+...-+......++...+..++.+.. +....+.+..+.
T Consensus 217 ~~~~~~~~~~-~-~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~-----------------~~~w~~~n~wL~ 277 (372)
T PF12231_consen 217 LEDLQRSLEN-G-KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSR-----------------LDSWEHLNEWLK 277 (372)
T ss_pred HHHhcccccc-c-cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCch-----------------hhccHhHhHHHH
Confidence 3 23223322 3 56666666777766543333334566666666664332 112233456667
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHhchhhC
Q 010290 323 CVKELSSDSSQHVRSALATVIMGMAPILG 351 (513)
Q Consensus 323 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~ 351 (513)
.....++++++.+|..+..++..+.....
T Consensus 278 v~e~cFn~~d~~~k~~A~~aW~~liy~~~ 306 (372)
T PF12231_consen 278 VPEKCFNSSDPQVKIQAFKAWRRLIYASN 306 (372)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhc
Confidence 77778899999999999999999886443
No 226
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.14 E-value=0.84 Score=41.79 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=28.4
Q ss_pred chhHHHHHHHHHHHHHHHHhChhhH--hhhhHHHHHhhhcCc
Q 010290 448 KVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVALIKSSR 487 (513)
Q Consensus 448 ~~~~VR~~a~~~l~~l~~~~~~~~~--~~~i~~~L~~~~~~~ 487 (513)
+.+.++...++.+..+...+|.... .+.++|.|.+.+.++
T Consensus 236 ~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 236 SYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred CchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 3567777778888888887776544 377777777766665
No 227
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.13 E-value=1.1 Score=41.76 Aligned_cols=30 Identities=23% Similarity=0.301 Sum_probs=18.0
Q ss_pred hhhHHHHHhhhcCc--chHHHHHHHHHHHhcc
Q 010290 474 QHIVPQVALIKSSR--NLVLNSVLSLLKNAGI 503 (513)
Q Consensus 474 ~~i~~~L~~~~~~~--~~~~r~~~~~~~~i~~ 503 (513)
..++|.|.+.+.+. +-+.|.++.++.++..
T Consensus 238 ~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~ 269 (312)
T PF03224_consen 238 KYLIPLLADILKDSIKEKVVRVSLAILRNLLS 269 (312)
T ss_dssp TSHHHHHHHHHHH--SHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 44677776655442 5677766666666543
No 228
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=2.7 Score=46.43 Aligned_cols=224 Identities=15% Similarity=0.127 Sum_probs=118.2
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhh----h-ccCCchHHHHHHHHHhhcccccccC--chh
Q 010290 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLS----E-NNDDDDEVLLAMAEELGVFIPYVGG--LEY 83 (513)
Q Consensus 11 i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~----~-~~~~~~~vr~~~~~~l~~~~~~~~~--~~~ 83 (513)
+..+++.|...|+..+..|++.+.+.......+.... ++|.+. + ..|++..||...-..+..+...++. .++
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~-il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~ 121 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKG-ILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPF 121 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhh-hHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4566778888888888888888887766554433222 333332 3 5678888888888888777665543 345
Q ss_pred hhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHH----HhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH
Q 010290 84 ANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDV----VEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA 159 (513)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~ 159 (513)
.+.++|.+.-...|.+..|-..|-..+......-..... ...+.+++.+..-. -+++
T Consensus 122 LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~-------------------~~~~ 182 (1312)
T KOG0803|consen 122 LKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVK-------------------ETPD 182 (1312)
T ss_pred HHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhc-------------------cCcc
Confidence 666666665555566666655555555444331110111 11122222221100 0000
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHH---------HHHHHHHHhhhccchhHHHHHHHHHHHhh
Q 010290 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKS---------EIMSIFEELTQDDQDSVRLLAVEGCGALG 230 (513)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~---------~l~~~l~~l~~d~~~~vr~~a~~~l~~l~ 230 (513)
....+...-.+-++....+|-..+..++..+....|++.-.. .-...+++++++..+.++.+..+.+..+.
T Consensus 183 slSd~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~ 262 (1312)
T KOG0803|consen 183 SLSDLRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLI 262 (1312)
T ss_pred ccchhhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 000000011111222334555555555555555444322111 12345677889999999999999888877
Q ss_pred ccCChh---hhhhhHHHHHHHhcCCCC
Q 010290 231 KLLEPQ---DCVAHILPVIVNFSQDKS 254 (513)
Q Consensus 231 ~~~~~~---~~~~~l~~~l~~~~~d~~ 254 (513)
..+..- .....+.|.+.....+.+
T Consensus 263 ~~i~~~~~~~~~~~l~~~~~~~~~~~d 289 (1312)
T KOG0803|consen 263 DDILNRVMESEKNYLKPVLLGSIDSLD 289 (1312)
T ss_pred hhhHHhcchhhhhHhhHHHHccccccc
Confidence 664432 113335555555554444
No 229
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=1.9 Score=38.81 Aligned_cols=100 Identities=15% Similarity=0.237 Sum_probs=62.7
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc---ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhCh-HHHHHhhh
Q 010290 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPT---RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-ELAIQHIL 321 (513)
Q Consensus 246 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-~~~~~~l~ 321 (513)
+..++.+.+|.||+.++..+..+... +...+ ....++.+.+++++..+ -.-|+.++..+.+..+- +.+.+.++
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~~ 84 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDLL 84 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45566677778888877766666544 32222 24577888888888876 44556667777654221 12333445
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHhch
Q 010290 322 PCVKELSSDSSQHVRSALATVIMGMAP 348 (513)
Q Consensus 322 ~~l~~~~~d~~~~vr~~~~~~l~~l~~ 348 (513)
..+...+.|+.|..-...+..+..+++
T Consensus 85 k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 555666677777777777777777764
No 230
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.94 E-value=1.1 Score=37.12 Aligned_cols=109 Identities=14% Similarity=0.124 Sum_probs=72.3
Q ss_pred hhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH----HHHHHHHHHHHHcCCC-chHHHHHHHHhHHHHHHHhhh-h
Q 010290 124 EHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA----LKTELRTIYRQLCQDD-MPMVRRSAATNLGKFAATVEA-A 197 (513)
Q Consensus 124 ~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~-~ 197 (513)
..+...+.++.+++++..|..++.++...++..+.+ .....+..+.+.++.+ .+.+++.++.++..+...... +
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 345556777788888889999999998888887666 3456677777777655 567888999999888876543 1
Q ss_pred hh--------HHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCC
Q 010290 198 HL--------KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE 234 (513)
Q Consensus 198 ~~--------~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 234 (513)
.+ .+.+++.+.+++++ ..+...++.++..+....+
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 11 12334444444444 4556667777766666544
No 231
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=94.94 E-value=3.6 Score=39.26 Aligned_cols=176 Identities=14% Similarity=0.056 Sum_probs=104.9
Q ss_pred HHHHHHHHHhHHHHHhhh-ChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCCh
Q 010290 294 AEVRIAAAGKVTKICRIL-NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFP 372 (513)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~ 372 (513)
..=|..|++.+..+.+.- |.+.+...++..+....++++.+.|..+++++.+++-.-+.-.....-+..+.+.+.|+..
T Consensus 82 ~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~ 161 (371)
T PF14664_consen 82 DVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSF 161 (371)
T ss_pred hHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccH
Confidence 344788888888887753 3445556677777788888888999999999888874333222222334556666666555
Q ss_pred HHHHHHHHHHHHhhhhhhhhh------hhhhHHHHHHHhh---cCCCh--hHHHHHHHHHHHHHHHhCh------hhHHH
Q 010290 373 DVRLNIISKLDQVNQVIGIDL------LSQSLLPAIVELA---EDRHW--RVRLAIIEYIPLLASQLGV------GFFDD 435 (513)
Q Consensus 373 ~vr~~a~~~l~~i~~~~~~~~------~~~~l~~~l~~l~---~~~~~--~vR~~~~~~l~~l~~~~~~------~~~~~ 435 (513)
.+-...+.++-.+...-.... -.+.++..+.+.- ..++. ..-..+..++..+.+.... ..+
T Consensus 162 ~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~-- 239 (371)
T PF14664_consen 162 SISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF-- 239 (371)
T ss_pred hHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc--
Confidence 555555554444433221111 1123333333331 11122 2334566667777665322 212
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh
Q 010290 436 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW 471 (513)
Q Consensus 436 ~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~ 471 (513)
+.+..++..+.-|++++|...+..+-.+...-.+.|
T Consensus 240 ~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w 275 (371)
T PF14664_consen 240 RGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSW 275 (371)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCc
Confidence 357778888999999999999999998887544444
No 232
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=94.79 E-value=12 Score=44.44 Aligned_cols=252 Identities=17% Similarity=0.219 Sum_probs=141.4
Q ss_pred HHHhhhccchhHHHHHHHHHHHhhccCCh--------hhhhhhHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhCCCcc
Q 010290 207 FEELTQDDQDSVRLLAVEGCGALGKLLEP--------QDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPT 277 (513)
Q Consensus 207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--------~~~~~~l~~~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 277 (513)
+...+...++++|..+..++..+...... -.....++..+.. ...|.++.+|......+. ..+...-.
T Consensus 486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~la 562 (2341)
T KOG0891|consen 486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLA 562 (2341)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhc
Confidence 34466777889999998877766655332 1112222232322 335777777776665554 22222222
Q ss_pred ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhh----hhhhhhhcCCCcHHHHHHHHHHHHHhchh--hC
Q 010290 278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHI----LPCVKELSSDSSQHVRSALATVIMGMAPI--LG 351 (513)
Q Consensus 278 ~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l----~~~l~~~~~d~~~~vr~~~~~~l~~l~~~--~~ 351 (513)
.+..+-..+..+.|..-.++.++...++.++.. .+..+.+.+ +.....+..+...++......-+..+... ..
T Consensus 563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~-~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~ 641 (2341)
T KOG0891|consen 563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSY-NPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVL 641 (2341)
T ss_pred CchhHHHHHHHhhhhhhhhHHhHHhhccccccc-cHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHH
Confidence 345666777888888889999998888877652 121111211 22222222222233333333333322211 11
Q ss_pred HHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhh--hhhhhhhHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHh
Q 010290 352 KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQL 428 (513)
Q Consensus 352 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~--~~~~~~~l~~~l~~l~~~~-~~~vR~~~~~~l~~l~~~~ 428 (513)
.....+.++..+...+.|....+-.++..+++.++...| ...+.+.+++.+.+.+.+. +..-|.++...++.+.+.-
T Consensus 642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~ 721 (2341)
T KOG0891|consen 642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESST 721 (2341)
T ss_pred HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence 111224455566667788888899999999999998877 3333346666666665554 4567788888888887652
Q ss_pred C----hhhHHHHHHHHHHHHh-cCchhHHHHHHHHHHHH
Q 010290 429 G----VGFFDDKLGALCMQWL-KDKVYSIRDAAANNVKR 462 (513)
Q Consensus 429 ~----~~~~~~~~~~~l~~~l-~d~~~~VR~~a~~~l~~ 462 (513)
+ +..-.+.++..+...+ ......+|.++.+.++.
T Consensus 722 ~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~ 760 (2341)
T KOG0891|consen 722 GYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGL 760 (2341)
T ss_pred ceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhh
Confidence 2 1111233444444433 34456788888888773
No 233
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.76 E-value=3.6 Score=38.46 Aligned_cols=184 Identities=8% Similarity=0.038 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccC-Chh--hh------h-hhHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 010290 199 LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL-EPQ--DC------V-AHILPVIVNFSQDKSWRVRYMVANQLYEL 268 (513)
Q Consensus 199 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~-~~~--~~------~-~~l~~~l~~~~~d~~~~vr~~~~~~l~~l 268 (513)
....+++.+...+..-+.+.|..+...++.+...- +.. .. . +.++..+....++++-.. . .|.+
T Consensus 73 ~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial--~----~g~m 146 (335)
T PF08569_consen 73 YRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL--N----CGDM 146 (335)
T ss_dssp HHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH--H----HHHH
T ss_pred HHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc--h----HHHH
Confidence 34456666666777777788888888887776552 221 11 1 446666666666655321 1 1222
Q ss_pred HHHhCCCc------cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhC---hH---HHHHhhhhhhhhhcCCCcHHHH
Q 010290 269 CEAVGPEP------TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN---PE---LAIQHILPCVKELSSDSSQHVR 336 (513)
Q Consensus 269 ~~~~~~~~------~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~---~~~~~l~~~l~~~~~d~~~~vr 336 (513)
...+-... ..+..+-.+.+..+.++.+|-..|...+..+..... .+ ...+.+...+..++.++++-+|
T Consensus 147 lRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 147 LRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 11111110 012233335567788888998888888887665321 11 1123455667788889999999
Q ss_pred HHHHHHHHHhchhhCHHHH------HHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhh
Q 010290 337 SALATVIMGMAPILGKDAT------IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (513)
Q Consensus 337 ~~~~~~l~~l~~~~~~~~~------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~ 388 (513)
+..+..|+.+.-.-....+ ...-+..+..+|+|+...+|..|...+.-++..
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 9999999988632222111 145677888889999999999998888877654
No 234
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.68 E-value=1.1 Score=43.55 Aligned_cols=120 Identities=14% Similarity=0.189 Sum_probs=74.9
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCC--------ChhHHHHHHHHHHHHHHH--hCh
Q 010290 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR--------HWRVRLAIIEYIPLLASQ--LGV 430 (513)
Q Consensus 361 ~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~--------~~~vR~~~~~~l~~l~~~--~~~ 430 (513)
.-+.+.+.+.++..|..|+.+|.+ +.-.+.++|.+..++.+. |.+.-...++.+-.+.++ +--
T Consensus 210 ~~It~a~~g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~l 282 (576)
T KOG2549|consen 210 KEITEACTGSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFL 282 (576)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccch
Confidence 334444445667778877776664 222367777777766543 222222333333333322 122
Q ss_pred hhHHHHHHHHHHHHh----------cCchhHHHHHHHHHHHHHHHHhChhhH--hhhhHHHHHhhhcCc
Q 010290 431 GFFDDKLGALCMQWL----------KDKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVALIKSSR 487 (513)
Q Consensus 431 ~~~~~~~~~~l~~~l----------~d~~~~VR~~a~~~l~~l~~~~~~~~~--~~~i~~~L~~~~~~~ 487 (513)
+.+..+++|.++.++ .|+++.+|.-|+..+..++..++..+. ..++...+.+.+.|+
T Consensus 283 epYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~ 351 (576)
T KOG2549|consen 283 EPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDN 351 (576)
T ss_pred hhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 345567888887754 378899999999999999999987654 467777777766665
No 235
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.48 E-value=2.4 Score=35.17 Aligned_cols=77 Identities=18% Similarity=0.050 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHH---HHHHHHhhh-ccchhHHHHHHHHHHHhhccC
Q 010290 158 EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEI---MSIFEELTQ-DDQDSVRLLAVEGCGALGKLL 233 (513)
Q Consensus 158 ~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l---~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~ 233 (513)
....+.+...+.++++++++.-|-.++..++..++..+.+.+.+.. +..+...++ ++...++..++.++..+....
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 4466788889999999999999999999999999887766654432 333333343 445678888888888877654
Q ss_pred C
Q 010290 234 E 234 (513)
Q Consensus 234 ~ 234 (513)
.
T Consensus 100 ~ 100 (165)
T PF08167_consen 100 R 100 (165)
T ss_pred c
Confidence 4
No 236
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=7.3 Score=42.64 Aligned_cols=216 Identities=13% Similarity=0.106 Sum_probs=124.3
Q ss_pred HhhcCCCcchhhhHHhhhHhhcCCCCHH---HHHHHHHHHHHHcCC---CchHHHHHHHHhHHHHHHHhhh---hhhHHH
Q 010290 132 RLAAGEWFTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQD---DMPMVRRSAATNLGKFAATVEA---AHLKSE 202 (513)
Q Consensus 132 ~l~~d~~~~~R~~~~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d---~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ 202 (513)
.....+...+|.....++-.+.+..|+. .+..+++.+....+. +...+-+.+..++.-++..+-+ ......
T Consensus 849 ~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~ 928 (1610)
T KOG1848|consen 849 SDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILD 928 (1610)
T ss_pred HHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHH
Confidence 3445566788999999999999888887 345555555544332 3455656667777766654321 112233
Q ss_pred HHHHHHHhhh-ccchhHHHHHHHHHHHhhccCCh-----------------------------hhhhhhHHHHHHHhcCC
Q 010290 203 IMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEP-----------------------------QDCVAHILPVIVNFSQD 252 (513)
Q Consensus 203 l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~-----------------------------~~~~~~l~~~l~~~~~d 252 (513)
+++.+..... ..+.++--.|+..+-.+..++.. +...-.++.++.++++|
T Consensus 929 lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~d 1008 (1610)
T KOG1848|consen 929 LIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCED 1008 (1610)
T ss_pred HHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhcc
Confidence 4444433332 23334444444433333322111 11222367778889999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCc----cccchHHHHHHhcCC-------C--cHHH----HHHHHHhHHHHHhhhC---
Q 010290 253 KSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRD-------N--EAEV----RIAAAGKVTKICRILN--- 312 (513)
Q Consensus 253 ~~~~vr~~~~~~l~~l~~~~~~~~----~~~~ll~~l~~~l~d-------~--~~~v----r~~a~~~l~~~~~~~~--- 312 (513)
.-..||..+++++=++....|... +..-+...++.+++. . ..++ -+..+-.++.+++.+.
T Consensus 1009 sr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~f 1088 (1610)
T KOG1848|consen 1009 SRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENF 1088 (1610)
T ss_pred chHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999999999887655433 223344555555541 0 1111 1112222333333221
Q ss_pred --------hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhc
Q 010290 313 --------PELAIQHILPCVKELSSDSSQHVRSALATVIMGMA 347 (513)
Q Consensus 313 --------~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~ 347 (513)
--..++.++..+..+..+.++.+..+++.++..+.
T Consensus 1089 k~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1089 KLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 12445778888888889999999999999988764
No 237
>PF05536 Neurochondrin: Neurochondrin
Probab=94.37 E-value=6.5 Score=39.74 Aligned_cols=175 Identities=13% Similarity=0.028 Sum_probs=109.2
Q ss_pred hhHHHHHHHHHHHHHHhhc---ChHHHHhhHHHHHHHhhcCCCc-chhhhHHhhhHhhcCCC-CHH--HHHHHHHHHHHH
Q 010290 99 ETCVRDKAVESLCRIGSQM---REQDVVEHFIPLVKRLAAGEWF-TARVSSCGLFHVAYPSA-PEA--LKTELRTIYRQL 171 (513)
Q Consensus 99 ~~~vR~~a~~~l~~l~~~~---~~~~~~~~~~~~l~~l~~d~~~-~~R~~~~~~l~~~~~~~-~~~--~~~~l~~~l~~l 171 (513)
....+..|+..|..++..- ..+++.. -+|.+.......+. ..-..+.+++..++.+- |.. ...+.++.+.+.
T Consensus 70 ~~~~~~LavsvL~~f~~~~~~a~~~~~~~-~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei 148 (543)
T PF05536_consen 70 PEEYLSLAVSVLAAFCRDPELASSPQMVS-RIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEI 148 (543)
T ss_pred HHHHHHHHHHHHHHHcCChhhhcCHHHHH-HHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHH
Confidence 4456778888888888721 0122222 46776666554444 66666777777776332 222 233445566655
Q ss_pred cCCCchHHHHHHHHhHHHHHHHhhhhh------hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCh--------hh
Q 010290 172 CQDDMPMVRRSAATNLGKFAATVEAAH------LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--------QD 237 (513)
Q Consensus 172 ~~d~~~~vr~~a~~~l~~l~~~~~~~~------~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--------~~ 237 (513)
+.+ .+.....+...+..+....+.+. ....+++.+.+.........+...+..++.+....+. ..
T Consensus 149 ~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~ 227 (543)
T PF05536_consen 149 IPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPK 227 (543)
T ss_pred HHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhh
Confidence 554 55667777777777776655322 2234556666666666667777788888887776531 23
Q ss_pred hhhhHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCC
Q 010290 238 CVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPE 275 (513)
Q Consensus 238 ~~~~l~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~ 275 (513)
....+...+..++++ ..+.-|..+......+.+.+|.+
T Consensus 228 W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 228 WLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 345577777777765 46778999999889998888754
No 238
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.35 E-value=3.6 Score=38.43 Aligned_cols=135 Identities=12% Similarity=0.185 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhchhhCH-HHHHHhHHHHHHH-hcCC---CChHHHH-HHHHHHHHhhhhhhhh------hhhhhHHHH
Q 010290 334 HVRSALATVIMGMAPILGK-DATIEQLLPIFLS-LLKD---EFPDVRL-NIISKLDQVNQVIGID------LLSQSLLPA 401 (513)
Q Consensus 334 ~vr~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~-~l~d---~~~~vr~-~a~~~l~~i~~~~~~~------~~~~~l~~~ 401 (513)
.+|...+..+..+...... +...+.++|.+.+ .|.| ..+..|. .++..+..++..++.. .+.+.+...
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4556666666666655442 2223334444333 3332 3333333 2334455555554432 122344444
Q ss_pred HHHhhcC---CChhHHHHHHHHHHHHHHHhC-------hhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh
Q 010290 402 IVELAED---RHWRVRLAIIEYIPLLASQLG-------VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP 469 (513)
Q Consensus 402 l~~l~~~---~~~~vR~~~~~~l~~l~~~~~-------~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~ 469 (513)
...+..+ .-+..|......+..+...+- ++.+ ..++..+...+++++.+|-..+++++..+...+..
T Consensus 122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f-~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQF-KLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHH-HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 4455543 246899999999988887642 2333 34788888899999999999999999999987766
No 239
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=94.31 E-value=2.1 Score=34.46 Aligned_cols=74 Identities=19% Similarity=0.259 Sum_probs=58.7
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhH----HHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHHhCh
Q 010290 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGP 469 (513)
Q Consensus 396 ~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~----~~~~~~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~ 469 (513)
...+..+..-+.+++..+-..|+..+..+++++|..+. ...++..+.+++.+ .++.|+...+..+..+...++.
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 45566666666778888888888888888888887654 34678888888888 7889999999999999888764
No 240
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=94.28 E-value=0.28 Score=41.67 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=30.6
Q ss_pred HhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 010290 357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (513)
Q Consensus 357 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~ 425 (513)
+.+++.+++++.+++..||..|+..+..+.+. |-- .....+|.+..+..|++..+|..|...+..+.
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-GLv-nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQ-GLV-NPKQCVPTLIALETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-CCC-ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHH
Confidence 34444444445555555555555555444431 110 11344455555555555555555554444443
No 241
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=9.5 Score=42.37 Aligned_cols=85 Identities=11% Similarity=0.135 Sum_probs=52.8
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHHHhChh---hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhH----
Q 010290 400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA---- 472 (513)
Q Consensus 400 ~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~---- 472 (513)
..+..+.+++...+|.+..+.+..+.+.+... .-..++.|.+.....+.+ .|.-...+.+.-....+...|.
T Consensus 237 ~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~ 315 (1312)
T KOG0803|consen 237 EKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLPDEWLHLNS 315 (1312)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccccccc-cccHHHHHHHHHHhhhhhHHHhcccc
Confidence 34556778888899999999988888765433 112356666666666655 4444444444434455554444
Q ss_pred --hhhhHHHHHhhhc
Q 010290 473 --MQHIVPQVALIKS 485 (513)
Q Consensus 473 --~~~i~~~L~~~~~ 485 (513)
...+.|.+..+..
T Consensus 316 ~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 316 LLKKGILPLLSNLIR 330 (1312)
T ss_pred hhccchhHHHHHHHh
Confidence 2567777777666
No 242
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.06 E-value=2.1 Score=38.48 Aligned_cols=176 Identities=22% Similarity=0.184 Sum_probs=91.6
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHhchhhCHHHH---HHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhh-hhhhhHH
Q 010290 324 VKELSSDSSQHVRSALATVIMGMAPILGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-LLSQSLL 399 (513)
Q Consensus 324 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~-~~~~~l~ 399 (513)
+..++.+.++.||.+++..+..+... |...+ ....++.+.++++|..+ -..|+.++.++...-+.. .+.+.++
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~~ 84 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDLL 84 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34666778888888888777666544 22221 13467778888888776 444555666665543221 1223355
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHHHhChhh-----H----HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC--
Q 010290 400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF-----F----DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG-- 468 (513)
Q Consensus 400 ~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~-----~----~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~-- 468 (513)
..+...+.|+.|..-...+..++.+++.-+.-. + ..++ +-+.....|+..+ ..+-+.-++.+..++.
T Consensus 85 k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~l-m~l~~~~~d~~~n-~~a~f~ylA~vf~nls~~ 162 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGL-MRLARAFCDKSYN-AYAEFHYLAPVFANLSQF 162 (353)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccch-HHHHHHHhCcccc-cccchhHHHHHHHHHhhh
Confidence 556666677766666666667666654311100 0 0122 2233344455554 3333444443333322
Q ss_pred --h-hhHh---hhhHHHHHhhhcCcchHHH-HHHHHHHHhccc
Q 010290 469 --P-DWAM---QHIVPQVALIKSSRNLVLN-SVLSLLKNAGID 504 (513)
Q Consensus 469 --~-~~~~---~~i~~~L~~~~~~~~~~~r-~~~~~~~~i~~~ 504 (513)
+ .++. -.....+..+-+..+.++| -++..+++.+=|
T Consensus 163 ~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd 205 (353)
T KOG2973|consen 163 EAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFD 205 (353)
T ss_pred hhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhcc
Confidence 1 1221 2233444455554455666 556777775544
No 243
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.03 E-value=1.1 Score=39.91 Aligned_cols=109 Identities=16% Similarity=0.203 Sum_probs=62.7
Q ss_pred cCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCC------ChhHHHHHHHHHHHHHHHhC--hhhHHHHHH
Q 010290 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR------HWRVRLAIIEYIPLLASQLG--VGFFDDKLG 438 (513)
Q Consensus 367 l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~------~~~vR~~~~~~l~~l~~~~~--~~~~~~~~~ 438 (513)
+...+...|.+|+++|.. +.-.++++|.+..++++. +...-...+.....+.+.-. -+.+..+++
T Consensus 207 ~dEs~~~~r~aAl~sLr~-------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlm 279 (450)
T COG5095 207 LDESDEQTRDAALESLRN-------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLM 279 (450)
T ss_pred HHHHHHHHHHHHHHHhcc-------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHH
Confidence 344466778888777654 222366677766665442 23333334444444443211 123455677
Q ss_pred HHHHHHh------cCc----hhHHHHHHHHHHHHHHHHhChhhH--hhhhHHHHHh
Q 010290 439 ALCMQWL------KDK----VYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVAL 482 (513)
Q Consensus 439 ~~l~~~l------~d~----~~~VR~~a~~~l~~l~~~~~~~~~--~~~i~~~L~~ 482 (513)
|.++.++ +++ ...+|..|+..++-.++.++..+- ..++...+.+
T Consensus 280 PSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllK 335 (450)
T COG5095 280 PSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLK 335 (450)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHH
Confidence 7777654 222 346999999999999999887653 2455555555
No 244
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=93.95 E-value=6.6 Score=38.19 Aligned_cols=222 Identities=11% Similarity=0.099 Sum_probs=120.6
Q ss_pred hhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcC-CCcHHHHHHHHHhHHHHHhhhC---h
Q 010290 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILN---P 313 (513)
Q Consensus 240 ~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~---~ 313 (513)
..++..+..++.+++++-|..+-..+..+-..+...- ....+...+.+.+. .....--...++.++.+..++. .
T Consensus 132 ~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk 211 (409)
T PF01603_consen 132 QKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLK 211 (409)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCc
Confidence 4467778888888999999988888888776554321 12233444444443 2233344556677777777543 2
Q ss_pred HHHHHhhhhhhhhhcCCCcH-HHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhh
Q 010290 314 ELAIQHILPCVKELSSDSSQ-HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392 (513)
Q Consensus 314 ~~~~~~l~~~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~ 392 (513)
+.....+...+..+...+.. ........++..+.+.-. .....++..+++.---.+..=....+.-+..+.+.++.+
T Consensus 212 ~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp--~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~ 289 (409)
T PF01603_consen 212 EEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP--SLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPE 289 (409)
T ss_dssp HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G--GGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHH
Confidence 22223333333344344432 224445555555543211 112233444444433334444445566677777766655
Q ss_pred hhh---hhHHHHHHHhhcCCChhHHHHHHHHHH--HHHHHhChhhHHHHHHHHHHHHhcC-----chhHHHHHHHHHHHH
Q 010290 393 LLS---QSLLPAIVELAEDRHWRVRLAIIEYIP--LLASQLGVGFFDDKLGALCMQWLKD-----KVYSIRDAAANNVKR 462 (513)
Q Consensus 393 ~~~---~~l~~~l~~l~~~~~~~vR~~~~~~l~--~l~~~~~~~~~~~~~~~~l~~~l~d-----~~~~VR~~a~~~l~~ 462 (513)
.+. ..+...+...+++++..|-+.|+..+. .+...+.. ....++|.+...+.. =+..||..|..++..
T Consensus 290 ~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~--~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~ 367 (409)
T PF01603_consen 290 EFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQ--NSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKI 367 (409)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHC--THHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 443 345555666778999998888887663 22222211 234577877776543 245799999999987
Q ss_pred HHH
Q 010290 463 LAE 465 (513)
Q Consensus 463 l~~ 465 (513)
+.+
T Consensus 368 l~~ 370 (409)
T PF01603_consen 368 LME 370 (409)
T ss_dssp HHT
T ss_pred HHH
Confidence 766
No 245
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.94 E-value=7.9 Score=39.12 Aligned_cols=108 Identities=12% Similarity=0.035 Sum_probs=86.0
Q ss_pred HHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhh--------hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCh-
Q 010290 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH--------LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP- 235 (513)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~--------~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~- 235 (513)
.+.+.+++++.+...|-...+.++.+...+..+. -.+.++.++.+-+.|.++-+|..|++.+..+...-..
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 4667788899999999999999999887664321 2356888888899999999999999999988876332
Q ss_pred hhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 010290 236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272 (513)
Q Consensus 236 ~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 272 (513)
......+.......++|.+..||+.+++.++.+....
T Consensus 381 ~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 381 VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 1224568888888999999999999999998887543
No 246
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.94 E-value=0.84 Score=42.64 Aligned_cols=110 Identities=17% Similarity=0.215 Sum_probs=84.6
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhh---hhhhhhhhh-ccCCchHHHHHHHHHhhcccccccC---chh
Q 010290 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTR---KELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG---LEY 83 (513)
Q Consensus 11 i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~---~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~---~~~ 83 (513)
+..++..+++-+..+|..|+..+...... .|.... ..+++.+.. ..|++..||....+.+..++..... ..+
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 77888999999999999999999888776 454433 344555555 6788999999999988875554433 345
Q ss_pred hhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHH
Q 010290 84 ANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQD 121 (513)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~ 121 (513)
...+++.+.....+-.+.+|.-+...+.-++..+++.-
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~ 176 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTF 176 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHH
Confidence 66677777777788889999999999999988887643
No 247
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.89 E-value=12 Score=41.08 Aligned_cols=108 Identities=18% Similarity=0.138 Sum_probs=69.8
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhh----hhhhhhhHHHHHHHhhc------CCChhH-------HHHHHHH
Q 010290 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG----IDLLSQSLLPAIVELAE------DRHWRV-------RLAIIEY 420 (513)
Q Consensus 358 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~----~~~~~~~l~~~l~~l~~------~~~~~v-------R~~~~~~ 420 (513)
.++..+.++..|+.++||..|+.++=++...-| ...+..-+...+..++. .+.|.- -+..+..
T Consensus 997 ~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~lt 1076 (1610)
T KOG1848|consen 997 MLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLT 1076 (1610)
T ss_pred HHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhh
Confidence 345566677889999999999999888865543 32232222233333332 112221 2356667
Q ss_pred HHHHHHHhChhh-----------HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 010290 421 IPLLASQLGVGF-----------FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 465 (513)
Q Consensus 421 l~~l~~~~~~~~-----------~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~ 465 (513)
++.+++.+...+ .-+.++.++.++..|.++++..+|++++..+..
T Consensus 1077 isgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1077 ISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 777776654432 124578888889999999999999999877654
No 248
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.79 E-value=3.3 Score=35.18 Aligned_cols=73 Identities=22% Similarity=0.257 Sum_probs=60.5
Q ss_pred HHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhh
Q 010290 316 AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 390 (513)
Q Consensus 316 ~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~ 390 (513)
+.+..++.+.+++.+++..+|..+++.+..+.+ .|- .-....+|.++.+..|+++.+|..|...+..+.+..+
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~-qGL-vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILR-QGL-VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-cCC-CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 457788889999999999999999999988874 331 1235789999999999999999999999998877644
No 249
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.63 E-value=2.5 Score=41.21 Aligned_cols=139 Identities=12% Similarity=0.220 Sum_probs=83.7
Q ss_pred HHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhcc--------chhHHHHHHHHHHHhhcc--C
Q 010290 164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD--------QDSVRLLAVEGCGALGKL--L 233 (513)
Q Consensus 164 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~--------~~~vr~~a~~~l~~l~~~--~ 233 (513)
.+..+.+.|-+.++..|..|.++|.. +.-...++|+|..++.+. +-..-...++....+... +
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 34445555556778888888777654 233456777777776543 112222233333333332 1
Q ss_pred ChhhhhhhHHHHHHHhc----------CCCCHHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCCC--cHHHHHH
Q 010290 234 EPQDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEPT--RSDVVPAYVRLLRDN--EAEVRIA 299 (513)
Q Consensus 234 ~~~~~~~~l~~~l~~~~----------~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~ll~~l~~~l~d~--~~~vr~~ 299 (513)
--+.+...++|.+..++ .|..|.+|.-++..+..++..++.... ...+...+.+.+.|+ .....-.
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence 22345566677665532 356899999999999999888876432 345667777777766 3566667
Q ss_pred HHHhHHHHHh
Q 010290 300 AAGKVTKICR 309 (513)
Q Consensus 300 a~~~l~~~~~ 309 (513)
++..|..+..
T Consensus 361 ai~gL~~lg~ 370 (576)
T KOG2549|consen 361 AIAGLSELGH 370 (576)
T ss_pred HHHHHHHhhh
Confidence 7766666543
No 250
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=93.56 E-value=12 Score=41.45 Aligned_cols=72 Identities=11% Similarity=0.072 Sum_probs=55.4
Q ss_pred hhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhh---HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 010290 395 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (513)
Q Consensus 395 ~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~ 466 (513)
...++..|.+.+++.+..+-..+|..|-.+......+. +....++.+..++..++..+-..++.++..+...
T Consensus 528 ~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 528 RHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred HhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 35778888888899888888889988888865533321 2234688889999999999988888888887764
No 251
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=93.55 E-value=7.8 Score=37.70 Aligned_cols=231 Identities=10% Similarity=0.080 Sum_probs=131.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCc----cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhCh--HHHHHhhhhh
Q 010290 250 SQDKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--ELAIQHILPC 323 (513)
Q Consensus 250 ~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~ 323 (513)
..+++|.--..+-+.|..+......+. ...+++-.++.+++.+|+.-|......+..+...+.. ..+...+...
T Consensus 99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~ 178 (409)
T PF01603_consen 99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI 178 (409)
T ss_dssp ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 447788877777777777766544433 4567888899999999999999888888886654322 2333444445
Q ss_pred hhhhcC-CCcHHHHHHHHHHHHHhchhhC---HHHHHHhHHHHHHHhcCCCChHH-HHHHHHHHHHhhhhhhhhhhhhhH
Q 010290 324 VKELSS-DSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPDV-RLNIISKLDQVNQVIGIDLLSQSL 398 (513)
Q Consensus 324 l~~~~~-d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~v-r~~a~~~l~~i~~~~~~~~~~~~l 398 (513)
+..+.. +....--..+++.++.+...+. ++.....+...++.+.+.+.... ...-..++..+++. ...+...+
T Consensus 179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~k--dp~l~~~~ 256 (409)
T PF01603_consen 179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEK--DPSLAEPV 256 (409)
T ss_dssp HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH---GGGHHHH
T ss_pred HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh--CchhHHHH
Confidence 555543 2333444566777777776554 22233444555666666554332 33444444444432 11233445
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHH---HHHHHHHHhcCchhHHHHHHHHHHHH--HHHHhChhhHh
Q 010290 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK---LGALCMQWLKDKVYSIRDAAANNVKR--LAEEFGPDWAM 473 (513)
Q Consensus 399 ~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~---~~~~l~~~l~d~~~~VR~~a~~~l~~--l~~~~~~~~~~ 473 (513)
+..+...---.+..-....+.-+..+...+++..+... +...+-+++++++..|-+.|+..+.. +...+.. ..
T Consensus 257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~--~~ 334 (409)
T PF01603_consen 257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQ--NS 334 (409)
T ss_dssp HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHC--TH
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHh--Ch
Confidence 55555554455666666778888888888877766543 44555557899999999999988732 3333322 12
Q ss_pred hhhHHHHHhhh
Q 010290 474 QHIVPQVALIK 484 (513)
Q Consensus 474 ~~i~~~L~~~~ 484 (513)
+.++|.+...+
T Consensus 335 ~~i~p~i~~~L 345 (409)
T PF01603_consen 335 RVILPIIFPAL 345 (409)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45666665544
No 252
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.49 E-value=24 Score=43.10 Aligned_cols=283 Identities=16% Similarity=0.194 Sum_probs=157.1
Q ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHhhcc----CCh------hhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 010290 201 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKL----LEP------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (513)
Q Consensus 201 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~----~~~------~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 270 (513)
..+++.+...+..++.+++..+..++..+... ++. -+....+++-+..++-++.|.-|..-+..++-+..
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 35778888888899999999999888776643 332 13345577778888999999999988888777776
Q ss_pred HhCCCcc---ccchHHHHHHhcCCCcHHHHH----HHHHhHHHHHhhh----ChH----HHHHhhhhhhhhhcCCCcHHH
Q 010290 271 AVGPEPT---RSDVVPAYVRLLRDNEAEVRI----AAAGKVTKICRIL----NPE----LAIQHILPCVKELSSDSSQHV 335 (513)
Q Consensus 271 ~~~~~~~---~~~ll~~l~~~l~d~~~~vr~----~a~~~l~~~~~~~----~~~----~~~~~l~~~l~~~~~d~~~~v 335 (513)
.++.... ...++..++..+.|...++-. .+-..+-.+...+ +.+ .....++..+...+.+++..|
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 6552211 124555555556665444333 2222222222211 111 223344445555567889999
Q ss_pred HHHHHHHHHHhchhhCHHHHHHhHHHHHHHhc---------CCCChHHHHHHHHHHHHhhhhhhhhhh-----hhhHHHH
Q 010290 336 RSALATVIMGMAPILGKDATIEQLLPIFLSLL---------KDEFPDVRLNIISKLDQVNQVIGIDLL-----SQSLLPA 401 (513)
Q Consensus 336 r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l---------~d~~~~vr~~a~~~l~~i~~~~~~~~~-----~~~l~~~ 401 (513)
|..+..++..++...|.+.. .++..+.+++ ..-...+....+.+... |-..+++.+ .-.+...
T Consensus 1143 R~~~~~~L~~i~~~s~~~v~--~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~f-C~~l~p~~f~~~~~l~~l~~~ 1219 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGKSVV--KLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITF-CLSLGPCLFDFTEELYRLKRF 1219 (3550)
T ss_pred HHHHHHHHHHHHHHcCCcHH--HHHHHHHHHHhccccccccccCCHHHHhhhHHHHHH-HHHcCCcccCchHHHHHHHHH
Confidence 99999999999988765432 2222233332 11112222222222211 111121110 0000000
Q ss_pred --------------HHHhhc----CCChhHHHHHHHHHHHHHHHhCh-----hhHHHHHHHHHHHHhcCchhHHHHHHHH
Q 010290 402 --------------IVELAE----DRHWRVRLAIIEYIPLLASQLGV-----GFFDDKLGALCMQWLKDKVYSIRDAAAN 458 (513)
Q Consensus 402 --------------l~~l~~----~~~~~vR~~~~~~l~~l~~~~~~-----~~~~~~~~~~l~~~l~d~~~~VR~~a~~ 458 (513)
+..... ...-..|.+++.+++.......- ..+...++-++++.+..+.+++-..+..
T Consensus 1220 ~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~ 1299 (3550)
T KOG0889|consen 1220 LIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALE 1299 (3550)
T ss_pred HHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 111111 11344688888888766554221 1245678888899999999999999998
Q ss_pred HHHHHHHH---hChhhHhhhhHHHHHhhhcC
Q 010290 459 NVKRLAEE---FGPDWAMQHIVPQVALIKSS 486 (513)
Q Consensus 459 ~l~~l~~~---~~~~~~~~~i~~~L~~~~~~ 486 (513)
.+...... ++.+..+...-|.|..+...
T Consensus 1300 ~l~~v~~~~~~~~ke~lq~~lrplL~~l~d~ 1330 (3550)
T KOG0889|consen 1300 GLRKVLAQDVKLPKELLQSHLRPLLMNLSDH 1330 (3550)
T ss_pred HHHhhhhccccccHHHHHhhHHHHHHhhhHh
Confidence 88776553 23333333333444444333
No 253
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=93.44 E-value=6.7 Score=36.65 Aligned_cols=37 Identities=19% Similarity=0.110 Sum_probs=22.3
Q ss_pred ccCCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhc
Q 010290 56 NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCT 96 (513)
Q Consensus 56 ~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ 96 (513)
+.|++..||+.|.+-|..|++. +...-+.+.+.++++
T Consensus 70 ~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 70 CEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLN 106 (460)
T ss_pred ccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHH
Confidence 4566667777777777777663 334445555555554
No 254
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=93.41 E-value=0.43 Score=34.95 Aligned_cols=70 Identities=17% Similarity=0.314 Sum_probs=52.3
Q ss_pred CCChhHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhcCch--hHHHHHHHHHHHHHHHHhChhhHhhhhHHHHH
Q 010290 408 DRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKV--YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVA 481 (513)
Q Consensus 408 ~~~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~~--~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~ 481 (513)
+..|.+|..|...++.++..++.. .....+...+.+.+.|+. ...+..|+..+..+ |++.+...++|.|.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l~ 90 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNLK 90 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCcC
Confidence 457999999999999999887764 356678888888888664 45777777777766 66655566777653
No 255
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.39 E-value=3 Score=33.55 Aligned_cols=74 Identities=14% Similarity=0.054 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhh----hhHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhhccCCh
Q 010290 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP 235 (513)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~ 235 (513)
.+.+..+.+-+.++++.|...+...|..+++.+|.. .....++..+.+++.+ .+..|+...+..+..++..+..
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 456677777788888999888999999888888863 3344566667777776 6777888888888777766553
No 256
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=93.37 E-value=0.19 Score=30.21 Aligned_cols=29 Identities=24% Similarity=0.083 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 010290 436 KLGALCMQWLKDKVYSIRDAAANNVKRLA 464 (513)
Q Consensus 436 ~~~~~l~~~l~d~~~~VR~~a~~~l~~l~ 464 (513)
..+|.+.+++.++++.||..|+++++.|+
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36788888888888888888888888765
No 257
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.32 E-value=12 Score=39.37 Aligned_cols=93 Identities=22% Similarity=0.219 Sum_probs=69.7
Q ss_pred HHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCH--HH---HHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhh
Q 010290 317 IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--DA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 391 (513)
Q Consensus 317 ~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~ 391 (513)
...++..-..++++.+-++|..++.++......+.. +. .....+|.+...+.++++-+-..|+.++..++...|.
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence 345555666788999999999999998776554432 11 1356788899999999999999999999999887664
Q ss_pred h---hhhhhHHHHHHHhhcCC
Q 010290 392 D---LLSQSLLPAIVELAEDR 409 (513)
Q Consensus 392 ~---~~~~~l~~~l~~l~~~~ 409 (513)
- .+.+.++|.+..++.+.
T Consensus 881 Fv~sR~l~dvlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 881 FVASRFLEDVLPWLKHLCQDS 901 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 2 24467888888776653
No 258
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=93.32 E-value=0.87 Score=36.91 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=39.4
Q ss_pred HHHHHHHHhhhccc----hhHHHHHHHHHHHhhccCChhhhhh-hHHHHHHHhcCCCCHHHHHHHHHHH
Q 010290 202 EIMSIFEELTQDDQ----DSVRLLAVEGCGALGKLLEPQDCVA-HILPVIVNFSQDKSWRVRYMVANQL 265 (513)
Q Consensus 202 ~l~~~l~~l~~d~~----~~vr~~a~~~l~~l~~~~~~~~~~~-~l~~~l~~~~~d~~~~vr~~~~~~l 265 (513)
.+++.+.+.+.... ..+...+++++..+....+.+.... .+++.+.+.+.+++ .+..++++|
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 44455555444322 6788888999988888777655544 37777777776555 366666554
No 259
>PF05536 Neurochondrin: Neurochondrin
Probab=93.32 E-value=10 Score=38.39 Aligned_cols=175 Identities=10% Similarity=0.097 Sum_probs=96.9
Q ss_pred HHHHHHHHhHHHHHHHh--hhhhhHHHHHHHHHHhhhccch-hHHHHHHHHHHHhhccC-Chhhh-hhhHHHHHHHhcCC
Q 010290 178 MVRRSAATNLGKFAATV--EAAHLKSEIMSIFEELTQDDQD-SVRLLAVEGCGALGKLL-EPQDC-VAHILPVIVNFSQD 252 (513)
Q Consensus 178 ~vr~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~l~~d~~~-~vr~~a~~~l~~l~~~~-~~~~~-~~~l~~~l~~~~~d 252 (513)
.-+.-+...|..++..- ..+.-.-.-+|.+.+.+...+. .+-..++++|..++..- |.+.+ ....++.+.+...+
T Consensus 72 ~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~ 151 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN 151 (543)
T ss_pred HHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh
Confidence 34444555555555410 0011223456777777766666 77777888888777432 22222 12245555555544
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccc------cchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhC--------hHHHHH
Q 010290 253 KSWRVRYMVANQLYELCEAVGPEPTR------SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN--------PELAIQ 318 (513)
Q Consensus 253 ~~~~vr~~~~~~l~~l~~~~~~~~~~------~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~--------~~~~~~ 318 (513)
.+.....++..+..+....+.+... ..+++.+-..+......-+-.++..|+.+....+ .+.+..
T Consensus 152 -~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~ 230 (543)
T PF05536_consen 152 -QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLS 230 (543)
T ss_pred -CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHH
Confidence 4556677777777777665533221 2344555555554444556666666666665542 112344
Q ss_pred hhhhhhhhhcCC-CcHHHHHHHHHHHHHhchhhCHH
Q 010290 319 HILPCVKELSSD-SSQHVRSALATVIMGMAPILGKD 353 (513)
Q Consensus 319 ~l~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~ 353 (513)
.+...+..++++ ..+.-|..+......+.+.+|.+
T Consensus 231 ~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 231 DLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 555555555544 35677777777777777776653
No 260
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.19 E-value=0.68 Score=35.43 Aligned_cols=68 Identities=21% Similarity=0.217 Sum_probs=45.7
Q ss_pred HHHHHHHHHc-CCCchHHHHHHHHhHHHHHHHhhhhh-hHH--HHHHHHHHhhhccchhHHHHHHHHHHHhh
Q 010290 163 ELRTIYRQLC-QDDMPMVRRSAATNLGKFAATVEAAH-LKS--EIMSIFEELTQDDQDSVRLLAVEGCGALG 230 (513)
Q Consensus 163 ~l~~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~--~l~~~l~~l~~d~~~~vr~~a~~~l~~l~ 230 (513)
+++..+.+++ .+.++.+-.-||.-++.+++..+.-. +.+ ..-..+.+++++++++||..|+.++..+.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3566666666 33467777778888999998875421 111 24456667888999999999999888765
No 261
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=93.14 E-value=11 Score=38.06 Aligned_cols=103 Identities=13% Similarity=0.035 Sum_probs=51.3
Q ss_pred HHHHHhhcccccccCchhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhh---HHHHHHHhhcCCCcchh
Q 010290 66 AMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEH---FIPLVKRLAAGEWFTAR 142 (513)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~---~~~~l~~l~~d~~~~~R 142 (513)
.....+..|+-... ...++.+-..|.+-+=+++.-....+.++.+.+++.-+.+-...+ +..+++.+..+ ....
T Consensus 247 ~vl~~Lctfi~~~~-~s~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~~Lik~lp~~--~~~~ 323 (559)
T PF14868_consen 247 HVLVHLCTFIASLS-PSAFPELERFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHHVNLLAHLIKSLPSS--SYQL 323 (559)
T ss_pred HHHHHHHHHHHhCC-HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHcCCc--chhH
Confidence 33444444443222 234555544443333357777888888888888876554443333 33333333321 2222
Q ss_pred hhHHhhhHhhcCCCCHHHHHHHHHHHHHH
Q 010290 143 VSSCGLFHVAYPSAPEALKTELRTIYRQL 171 (513)
Q Consensus 143 ~~~~~~l~~~~~~~~~~~~~~l~~~l~~l 171 (513)
..-..+++.++..+.++...+++..+...
T Consensus 324 ~~L~~LL~Rl~~~m~~~~q~~~v~~f~p~ 352 (559)
T PF14868_consen 324 INLSILLRRLFFLMAPDHQSEFVQDFSPS 352 (559)
T ss_pred hhHHHHHHHHHHhcCHHHHHHHHHhcCcc
Confidence 23344455566666666555554444433
No 262
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.07 E-value=9.8 Score=37.47 Aligned_cols=281 Identities=13% Similarity=0.174 Sum_probs=153.2
Q ss_pred HHHHHHHhhhcc--c-hhHHHHHHHHHHHhhc--cCChhhhhhh--HHHHHHHhcCCCC--HHHHHHHHHHHHHHHHHhC
Q 010290 203 IMSIFEELTQDD--Q-DSVRLLAVEGCGALGK--LLEPQDCVAH--ILPVIVNFSQDKS--WRVRYMVANQLYELCEAVG 273 (513)
Q Consensus 203 l~~~l~~l~~d~--~-~~vr~~a~~~l~~l~~--~~~~~~~~~~--l~~~l~~~~~d~~--~~vr~~~~~~l~~l~~~~~ 273 (513)
++-.+..+++++ + ..+-..++++++.... .++++.+... ++......+++.. ...-...+..+......-.
T Consensus 154 ~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll~~~~~~~~ 233 (559)
T KOG2081|consen 154 VLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDELHEEATECICALLYCSLDRSE 233 (559)
T ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHHHHhhhhhc
Confidence 344444444432 2 4566677788877766 4555443332 3444444444332 2222223333333322111
Q ss_pred CCcc------ccchHHHHHHh-cCCCcHHHHHHHHHhHHHHHhhh------ChHHHHHhhhhhhhhhcCCCcHHHHHHHH
Q 010290 274 PEPT------RSDVVPAYVRL-LRDNEAEVRIAAAGKVTKICRIL------NPELAIQHILPCVKELSSDSSQHVRSALA 340 (513)
Q Consensus 274 ~~~~------~~~ll~~l~~~-l~d~~~~vr~~a~~~l~~~~~~~------~~~~~~~~l~~~l~~~~~d~~~~vr~~~~ 340 (513)
...+ ...+++....+ ....+.+-+.+..+-+..+++.+ +++.+. .++..+.-....+++++-....
T Consensus 234 ~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l-~~vellLl~~~h~~~evie~SF 312 (559)
T KOG2081|consen 234 GLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFL-RIVELLLLVAGHNDTEVIEASF 312 (559)
T ss_pred cCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcch-hHHHHHHHhccCCchhhhhhhH
Confidence 1011 12233333332 33445555666666666666644 222111 2223334445677788877777
Q ss_pred HHHHHhchhhCHHH---HHHhHHHHHHHhcC-------------------CCChHHHHHHHHHHHHhhhhhhhhhhhhhH
Q 010290 341 TVIMGMAPILGKDA---TIEQLLPIFLSLLK-------------------DEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (513)
Q Consensus 341 ~~l~~l~~~~~~~~---~~~~l~~~l~~~l~-------------------d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l 398 (513)
..+..+.+...... ...-+-|++.++++ ++...-|..+...+..+.-.+|.+...+..
T Consensus 313 ~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~ 392 (559)
T KOG2081|consen 313 NFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQM 392 (559)
T ss_pred HhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 77776665443211 11223344333321 122467889999999888888876554444
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHHhChhhH-hhh
Q 010290 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK--DKVYSIRDAAANNVKRLAEEFGPDWA-MQH 475 (513)
Q Consensus 399 ~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~--d~~~~VR~~a~~~l~~l~~~~~~~~~-~~~ 475 (513)
.-.+.+ ....|+.-++++..+..+++...++ ...++|-+++++. +.-..+|..++-.+|.+.+.+..+-. .+.
T Consensus 393 ~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~--e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le~ 468 (559)
T KOG2081|consen 393 YIRLKE--NNASWEEVEAALFILRAVAKNVSPE--ENTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELLEP 468 (559)
T ss_pred HHHHcc--CCCchHHHHHHHHHHHHHhccCCcc--ccchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 444444 5678999999999999999987665 3347777777553 23334999999999999887754322 244
Q ss_pred hHHHHHhhhcCcc
Q 010290 476 IVPQVALIKSSRN 488 (513)
Q Consensus 476 i~~~L~~~~~~~~ 488 (513)
++..+....+.++
T Consensus 469 v~~~~~~~~~~~~ 481 (559)
T KOG2081|consen 469 VLRYIRQGLQLKR 481 (559)
T ss_pred HHHHHHHHhhhcc
Confidence 4444445555544
No 263
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=93.03 E-value=5.3 Score=34.27 Aligned_cols=90 Identities=13% Similarity=0.105 Sum_probs=62.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCC
Q 010290 251 QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSD 330 (513)
Q Consensus 251 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d 330 (513)
.-++|.+...++..+..-... .....+.+....++++.-+|+++...+...... +...+.++..+.....|
T Consensus 82 ~~~~W~~~D~~~~~~~~~~~~------~~~~~~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d 152 (197)
T cd06561 82 YIDNWDLVDSLCANLLGKLLY------AEPELDLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHD 152 (197)
T ss_pred CCchHHHHHHHHHHHHHHHHh------cCcchHHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCC
Confidence 446788877665443332221 111227788888899999999888777665543 22346677778888888
Q ss_pred CcHHHHHHHHHHHHHhchh
Q 010290 331 SSQHVRSALATVIMGMAPI 349 (513)
Q Consensus 331 ~~~~vr~~~~~~l~~l~~~ 349 (513)
++..||.++..+|..++..
T Consensus 153 ~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 153 EEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999888865
No 264
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=92.97 E-value=0.16 Score=30.71 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHH
Q 010290 435 DKLGALCMQWLKDKVYSIRDAAANNV 460 (513)
Q Consensus 435 ~~~~~~l~~~l~d~~~~VR~~a~~~l 460 (513)
+.+...+...+.|+++.||++|++.+
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 46788888889999999999988753
No 265
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.97 E-value=9.5 Score=37.03 Aligned_cols=323 Identities=11% Similarity=0.094 Sum_probs=146.5
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCh----hh
Q 010290 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----QD 237 (513)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~ 237 (513)
.++..++..-+.--.+..|...+.+|--+-..- -.....++..|..++.-.+...|..+..-+......+.. +.
T Consensus 19 ~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~--~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~kn~k 96 (616)
T KOG2229|consen 19 SELKDLLRTNHTVLPPELREKIVKALILLRNKN--LIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHKNDK 96 (616)
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHhccC--cCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhcccch
Confidence 445555544444456788888888877665421 122345556666666666666777776666555543322 12
Q ss_pred hhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccc-cchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH--
Q 010290 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-- 314 (513)
Q Consensus 238 ~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~-~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-- 314 (513)
....+-.++..++.++++. .+..++..++.......+. ..-+.++...+-+.++.|..+++..+-.--. ...+
T Consensus 97 lnkslq~~~fsml~~~d~~---~ak~a~~~~~eL~kr~iW~d~~tV~i~~~acf~~~~ki~vs~l~FfL~~D~-~dee~d 172 (616)
T KOG2229|consen 97 LNKSLQAFMFSMLDQSDST---AAKMALDTMIELYKRNIWNDSKTVNIITTACFSKVPKILVSGLRFFLGADN-EDEEDD 172 (616)
T ss_pred HHHHHHHHHHHHHhCCCch---hHHHHHHHHHHHHHhcccccchhHHHHHHHHhccCcHHHHhhhHHhccCCc-cccccc
Confidence 2222444555666666654 3445555555555554443 2344444444445555666555543322110 0000
Q ss_pred -HHH-----HhhhhhhhhhcCCCcHHHHH-HHHHHHHHhch------------------hhCHHHHHHhHHHHHHHhcCC
Q 010290 315 -LAI-----QHILPCVKELSSDSSQHVRS-ALATVIMGMAP------------------ILGKDATIEQLLPIFLSLLKD 369 (513)
Q Consensus 315 -~~~-----~~l~~~l~~~~~d~~~~vr~-~~~~~l~~l~~------------------~~~~~~~~~~l~~~l~~~l~d 369 (513)
+.. ..+-..+.+..+ ....-|. ...++...+-+ ...+..+.+.+++.+... .
T Consensus 173 sd~~~d~dg~~~~~l~~~~vn-kktkkr~~kl~~a~k~vkkkqk~~~~~~t~nfs~i~ll~DpQ~fAEkLfk~~~~~--~ 249 (616)
T KOG2229|consen 173 SDSESDEDGPDADALLHQRVN-KKTKKRQKKLLRAAKSVKKKQKKKKNAPTFNFSAIHLLHDPQGFAEKLFKQLLAC--K 249 (616)
T ss_pred cccccccccccHHHHHHHHHh-ccchhhHHHHHHHHHHHHHHHhcCCCCCCCCccHHHhhcChhHHHHHHHHHHhhh--h
Confidence 000 000011111111 1111111 11111111110 011222334444443333 2
Q ss_pred CChHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHH-HhChhhHHHHHHHHHHHHhcC
Q 010290 370 EFPDVRLNIISKLDQVNQVIGIDL-LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS-QLGVGFFDDKLGALCMQWLKD 447 (513)
Q Consensus 370 ~~~~vr~~a~~~l~~i~~~~~~~~-~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~-~~~~~~~~~~~~~~l~~~l~d 447 (513)
...++|...+..+.+++. .-. +.-.+-|.+..++...-..+.+....+. ..+. ...++...+-+-.+.-.+..|
T Consensus 250 er~E~klm~~~lisRliG---~HkL~l~~fY~fl~~yl~phqrDvTqIl~~aa-Qa~Hd~VP~d~iEpl~k~Ian~FVtD 325 (616)
T KOG2229|consen 250 ERFEVKLMLMKLISRLIG---IHKLFLFGFYPFLQRYLQPHQRDVTQILAAAA-QASHDLVPPDIIEPLLKTIANNFVTD 325 (616)
T ss_pred hhHHHHHHHHHHHHHHhh---hhHHHHhhhHHHHHHHcCcchhhHHHHHHHHH-HhccCCCChHHhhHHHHHHHHHhccc
Confidence 345677666666665543 222 2235667788887765444433222111 1111 112222222122222225556
Q ss_pred c-hhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhhcCcchHHHHHHHHH
Q 010290 448 K-VYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKSSRNLVLNSVLSLL 498 (513)
Q Consensus 448 ~-~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~~~~ 498 (513)
. .++|-....+++..++....-. ..+.++.-|...-++..-...|++.++
T Consensus 326 ~~spEv~~vgiN~iREic~Rvpla-MteeLLqDLa~YK~sk~K~V~maarSL 376 (616)
T KOG2229|consen 326 ENSPEVMAVGINAIREICERVPLA-MTEELLQDLASYKTSKKKVVMMAARSL 376 (616)
T ss_pred CCCcceeehhhhHHHHHHhhcchh-hcHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4 4688888888888888865432 224555555555544433444444443
No 266
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=92.86 E-value=4.2 Score=32.65 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhh----HHHHHHHHHHhhhccc-h-h--HHHHHHHHHHHhhc
Q 010290 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHL----KSEIMSIFEELTQDDQ-D-S--VRLLAVEGCGALGK 231 (513)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~l~~d~~-~-~--vr~~a~~~l~~l~~ 231 (513)
...+.+..+.+-+.++++.+...++..+..+.+.+|+... ...++..+.+++.+.. . . ||..++..+..++.
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 3466778888888999999999999999999998886432 2346666666665432 2 2 89999999988888
Q ss_pred cCChh
Q 010290 232 LLEPQ 236 (513)
Q Consensus 232 ~~~~~ 236 (513)
.+...
T Consensus 119 ~f~~~ 123 (140)
T PF00790_consen 119 AFKSD 123 (140)
T ss_dssp HTTTS
T ss_pred HHCCC
Confidence 77543
No 267
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=92.79 E-value=3 Score=33.15 Aligned_cols=75 Identities=19% Similarity=0.172 Sum_probs=59.3
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHH----HHHHHHHHHHhcC---chhHHHHHHHHHHHHHHHHhC
Q 010290 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLKD---KVYSIRDAAANNVKRLAEEFG 468 (513)
Q Consensus 396 ~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~----~~~~~~l~~~l~d---~~~~VR~~a~~~l~~l~~~~~ 468 (513)
...+..+..-+++++..+...|+..+..+++.+|..+.. ..++..+.+++.. .+..||..++..+..+...++
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 556677777778888999999999999999998886532 2455567777765 477999999999999999887
Q ss_pred hh
Q 010290 469 PD 470 (513)
Q Consensus 469 ~~ 470 (513)
.+
T Consensus 116 ~~ 117 (133)
T cd03561 116 GH 117 (133)
T ss_pred CC
Confidence 63
No 268
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=92.57 E-value=3.6 Score=33.25 Aligned_cols=140 Identities=19% Similarity=0.210 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhc-CCCcHH
Q 010290 256 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS-SDSSQH 334 (513)
Q Consensus 256 ~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~-~d~~~~ 334 (513)
.+|...+.++..++...-.+. .+.+++.+.+.++.+ +.-....+..|..+.+.+.. .. .+....
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~-Wp~~l~~l~~~~~~~-~~~~~~~L~iL~~l~eEi~~-------------~~~~~~~~~ 67 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQ-WPDFLEDLLQLLQSS-PQHLELVLRILRILPEEITD-------------FRRSSLSQE 67 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHT-------------SHCCHSHHH
T ss_pred hHHHHHHHHHHHHHHHHChhh-CchHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHh-------------hhchhhhHH
Confidence 466777777777776654333 356777777766653 34444455555554432210 00 111122
Q ss_pred HHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCC----ChHHHHHHHHHHHHhhhhhhhhhhhh-hHHHHHHHhhcCC
Q 010290 335 VRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE----FPDVRLNIISKLDQVNQVIGIDLLSQ-SLLPAIVELAEDR 409 (513)
Q Consensus 335 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~----~~~vr~~a~~~l~~i~~~~~~~~~~~-~l~~~l~~l~~~~ 409 (513)
.|...-..+..- .+.++..+.+.+... ...+...+++++...+..++.+.+.+ .+++.+..++.++
T Consensus 68 r~~~l~~~l~~~---------~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~ 138 (148)
T PF08389_consen 68 RRRELKDALRSN---------SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSP 138 (148)
T ss_dssp HHHHHHHHHHHH---------HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCH
Confidence 233333333222 122344444443322 26777777777777777666655433 4777777777766
Q ss_pred ChhHHHHHHHHH
Q 010290 410 HWRVRLAIIEYI 421 (513)
Q Consensus 410 ~~~vR~~~~~~l 421 (513)
+. |..|++++
T Consensus 139 ~~--~~~A~~cl 148 (148)
T PF08389_consen 139 EL--REAAAECL 148 (148)
T ss_dssp CC--HHHHHHHH
T ss_pred HH--HHHHHHhC
Confidence 66 56666553
No 269
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=92.57 E-value=14 Score=37.94 Aligned_cols=123 Identities=13% Similarity=0.163 Sum_probs=78.0
Q ss_pred hhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHH
Q 010290 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQ 318 (513)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 318 (513)
...++..+..+..|+-..|+..++..+..+...-+.+ -..++-.+++-+.|++..+-..|...|..+....+. +..
T Consensus 302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq--E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPn--MK~ 377 (988)
T KOG2038|consen 302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ--ENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPN--MKI 377 (988)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH--HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCc--cee
Confidence 3457778888889999999999999888887543332 246888889999999988888888888777654321 122
Q ss_pred hhhhhhhhhc--CCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHH
Q 010290 319 HILPCVKELS--SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLS 365 (513)
Q Consensus 319 ~l~~~l~~~~--~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ 365 (513)
.++.-+..++ .+-+.+....++..|+++.-......+...++.+++.
T Consensus 378 Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~ 426 (988)
T KOG2038|consen 378 VVIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFS 426 (988)
T ss_pred ehHHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHH
Confidence 2333333333 2334455556666666665433333344444444443
No 270
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=92.31 E-value=5 Score=32.24 Aligned_cols=75 Identities=15% Similarity=0.136 Sum_probs=61.0
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHH----HHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhChh
Q 010290 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPD 470 (513)
Q Consensus 396 ~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~----~~~~~~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~ 470 (513)
...+..+..-+++++..+...|+..+..+++++|..+.. ..++..+.+++. ...+.||..++..+..+...++.+
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 566677777778889999999999999999999886543 457777877776 567899999999999999988753
No 271
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=92.30 E-value=0.73 Score=33.74 Aligned_cols=69 Identities=20% Similarity=0.378 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCc--HHHHHHHHHhHHHHHhhhChHHHHHhhhhhh
Q 010290 252 DKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNE--AEVRIAAAGKVTKICRILNPELAIQHILPCV 324 (513)
Q Consensus 252 d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l 324 (513)
+++|.+|..+++.++.++..++... ....+...+.+.+.|+. ...+-.|+..|..+ |++.+...++|.+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l 89 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNL 89 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCc
Confidence 5689999999999999999988643 34567777888887664 55677888777776 4455555666655
No 272
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=92.08 E-value=0.18 Score=30.49 Aligned_cols=25 Identities=44% Similarity=0.466 Sum_probs=16.1
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHh
Q 010290 279 SDVVPAYVRLLRDNEAEVRIAAAGK 303 (513)
Q Consensus 279 ~~ll~~l~~~l~d~~~~vr~~a~~~ 303 (513)
+.+...+.+.+.|+++.||.+|++.
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3566666666677777777766653
No 273
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=92.06 E-value=6 Score=33.86 Aligned_cols=77 Identities=13% Similarity=0.134 Sum_probs=40.0
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHhhcChH--HHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHH
Q 010290 91 LETLCTVEETCVRDKAVESLCRIGSQMREQ--DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTI 167 (513)
Q Consensus 91 l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~ 167 (513)
++.+++-.........+.+++.+...+... .....++..+..+..+++...|..+=.+++..++.+|++..=+++|.
T Consensus 5 ~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPL 83 (198)
T PF08161_consen 5 LESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPL 83 (198)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCC
Confidence 333443333344444455555555544432 11122333344455566667777777777777777777744444443
No 274
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=92.00 E-value=0.49 Score=28.41 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=19.6
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHHhh
Q 010290 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (513)
Q Consensus 358 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~ 386 (513)
..+|.+.++++++++.|+..++.+|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 35666777777777777777777776654
No 275
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.95 E-value=1.4 Score=33.69 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=41.3
Q ss_pred hHHHHHHHhhc-CCChhHHHHHHHHHHHHHHHhChh--hHH-HHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 010290 397 SLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG--FFD-DKLGALCMQWLKDKVYSIRDAAANNVKRLAE 465 (513)
Q Consensus 397 ~l~~~l~~l~~-~~~~~vR~~~~~~l~~l~~~~~~~--~~~-~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~ 465 (513)
.++..|..++. +.+..+-..||.=++.+++..+.. ... -..-..++.++++++++||..|+.++..+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34444555542 234555556666666666654332 111 1245677888999999999999999887754
No 276
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=91.93 E-value=15 Score=37.01 Aligned_cols=250 Identities=17% Similarity=0.159 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchh--HHHHHHHHHHHhhccCChhh
Q 010290 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDS--VRLLAVEGCGALGKLLEPQD 237 (513)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~--vr~~a~~~l~~l~~~~~~~~ 237 (513)
..+..+-.+...+++++..+|.++.-.|+..-..-..+.+...+.| ++.|.+.. |...|.-+|+.+.-....++
T Consensus 449 e~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~lL~P----i~~d~~~~~ev~~~aslsLG~IfvGscn~d 524 (878)
T KOG2005|consen 449 ECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLELLSP----IMFDTKSPMEVVAFASLSLGMIFVGSCNED 524 (878)
T ss_pred ccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHHHHhH----HhcCCCCchhHHHHHHhhcceeEEecCChH
Confidence 3445667777778888889998888887755443333444444444 56665554 55555556665544333444
Q ss_pred hhhhHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHH
Q 010290 238 CVAHILPVIVNFSQD--KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL 315 (513)
Q Consensus 238 ~~~~l~~~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 315 (513)
....++..+.+-.+. .+...|--++ .|+.+ ..|.+. ........++.-+..+|..+ ..+-..|...|...
T Consensus 525 vts~ilqtlmekse~El~d~~~RFL~L-GL~ll--flgkqe----~~d~~~e~~~~i~~~~~~~~-~~lv~~caYaGTGn 596 (878)
T KOG2005|consen 525 VTSSILQTLMEKSETELEDQWFRFLAL-GLALL--FLGKQE----SVDAVVETIKAIEGPIRKHE-SILVKSCAYAGTGN 596 (878)
T ss_pred HHHHHHHHHHHhhhhhhhchHHHHHHH-HHHHH--Hhcccc----hHHHHHHHHHHhhhHHHHHH-HHHHHHhhccccCc
Confidence 445555554443321 1222343221 22222 223221 11111111111112222222 22222233223211
Q ss_pred H--HHhhhhhhhhhcCCCcHH-HHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhh
Q 010290 316 A--IQHILPCVKELSSDSSQH-VRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392 (513)
Q Consensus 316 ~--~~~l~~~l~~~~~d~~~~-vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~ 392 (513)
. .+. ..+..++.+.... -...-...++.-.-.+|.+.-.+..+..+..++.=.++.+|.++--+++-++-.- .
T Consensus 597 vl~Iq~--q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSN--P 672 (878)
T KOG2005|consen 597 VLKIQS--QLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSN--P 672 (878)
T ss_pred eEEech--hhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCC--C
Confidence 1 011 1122333222111 1100022222222235666666777888888888888999999988888775421 1
Q ss_pred hhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 010290 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (513)
Q Consensus 393 ~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~ 427 (513)
+-.++..+.++..|.+..+-..++.+++-+...
T Consensus 673 --q~~vlDtLsk~shd~D~eva~naIfamGLiGAG 705 (878)
T KOG2005|consen 673 --QVNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAG 705 (878)
T ss_pred --cchHHHHHHHhccCcchHHHHHHHHHhccccCC
Confidence 236788888888888888888888887766543
No 277
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=91.90 E-value=4.1 Score=32.53 Aligned_cols=73 Identities=5% Similarity=0.014 Sum_probs=53.8
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHH----HHHHHHHHHHhcC------chhHHHHHHHHHHHHHHHH
Q 010290 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLKD------KVYSIRDAAANNVKRLAEE 466 (513)
Q Consensus 397 ~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~----~~~~~~l~~~l~d------~~~~VR~~a~~~l~~l~~~ 466 (513)
..+..+..-+++++..+-..|+..+..+++.+|..+.. ..++..+.+++.+ +...||...+..+..+...
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 44555666667777777777888888888888776532 4567777777753 5689999999999999888
Q ss_pred hCh
Q 010290 467 FGP 469 (513)
Q Consensus 467 ~~~ 469 (513)
++.
T Consensus 118 f~~ 120 (139)
T cd03567 118 LPH 120 (139)
T ss_pred hcc
Confidence 763
No 278
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=91.86 E-value=3.5 Score=31.21 Aligned_cols=75 Identities=13% Similarity=0.146 Sum_probs=50.5
Q ss_pred HHHHHHHHcCC----CchHHHHHHHHhHHHHHHHhhh--hhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhh
Q 010290 164 LRTIYRQLCQD----DMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD 237 (513)
Q Consensus 164 l~~~l~~l~~d----~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~ 237 (513)
++..+.+.+.| .+..-|+.+.++++.+.+..++ ..+.+++.-.|...+.. +++|..+++++..+...+++++
T Consensus 12 il~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~--~~l~~~al~~W~~fi~~L~~~~ 89 (107)
T PF08064_consen 12 ILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI--PELREEALSCWNCFIKTLDEED 89 (107)
T ss_pred HHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHHCCHHH
Confidence 34444444444 5677889999999999994443 12334455544444443 3899999999999999988866
Q ss_pred hhh
Q 010290 238 CVA 240 (513)
Q Consensus 238 ~~~ 240 (513)
..+
T Consensus 90 l~~ 92 (107)
T PF08064_consen 90 LGP 92 (107)
T ss_pred HHH
Confidence 444
No 279
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.62 E-value=12 Score=35.01 Aligned_cols=69 Identities=13% Similarity=0.103 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhH--HHHHHHHHHh----hhccchhHHHHHHHHHHHhhcc
Q 010290 164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLK--SEIMSIFEEL----TQDDQDSVRLLAVEGCGALGKL 232 (513)
Q Consensus 164 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~l----~~d~~~~vr~~a~~~l~~l~~~ 232 (513)
....|..+++.+++.++..++..+..+...-+..... ...++.+.+. ++.++.+++..++.++..+...
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~ 180 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS 180 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc
Confidence 4555666888889999999999999888765432111 2333444444 3345556677888888877743
No 280
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=91.53 E-value=6.2 Score=31.67 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=59.2
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHH----HHHHHHHHHHhcCch--hH--HHHHHHHHHHHHHHHh
Q 010290 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLKDKV--YS--IRDAAANNVKRLAEEF 467 (513)
Q Consensus 396 ~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~----~~~~~~l~~~l~d~~--~~--VR~~a~~~l~~l~~~~ 467 (513)
...+..+..-+++++..+...|+..+..+++++|..+.. ..++..+.+++.++. +. ||..+...+..+...+
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 567777888888899999999999999999998887644 347777777665432 22 9999999999999988
Q ss_pred Ch
Q 010290 468 GP 469 (513)
Q Consensus 468 ~~ 469 (513)
+.
T Consensus 121 ~~ 122 (140)
T PF00790_consen 121 KS 122 (140)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 281
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=91.48 E-value=1.6 Score=35.92 Aligned_cols=131 Identities=21% Similarity=0.242 Sum_probs=74.8
Q ss_pred CcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhh---hhhhh-hhhhHHHHHHHhh
Q 010290 331 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV---IGIDL-LSQSLLPAIVELA 406 (513)
Q Consensus 331 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~---~~~~~-~~~~l~~~l~~l~ 406 (513)
....+|..+.-++..+.+. ..+.+.+.+.+.+...+.+...+-...++.++..+... +|.+. ..+.+++.+..+.
T Consensus 17 ~~~~~r~~a~v~l~k~l~~-~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~ 95 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDA-AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLA 95 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHH
Confidence 4556777777776666432 22334455666666666555444555666666666443 23222 2356667777766
Q ss_pred c--CCChhHHHHHHHHHHHHHHH-hChhhHHHHHHHHHHHHhc-CchhH-HHHHHHHHHHH
Q 010290 407 E--DRHWRVRLAIIEYIPLLASQ-LGVGFFDDKLGALCMQWLK-DKVYS-IRDAAANNVKR 462 (513)
Q Consensus 407 ~--~~~~~vR~~~~~~l~~l~~~-~~~~~~~~~~~~~l~~~l~-d~~~~-VR~~a~~~l~~ 462 (513)
. .++..+..++++++..-+.. -...+..++.++.+..... +++.. ||..|+=.|.+
T Consensus 96 ~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 96 SRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp H-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred hcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 6 56677777777777554322 1223445667788888774 55455 77777666543
No 282
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=91.45 E-value=13 Score=35.35 Aligned_cols=187 Identities=10% Similarity=0.076 Sum_probs=105.2
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhC------hHHHHHhhhhhhhh-hcCCCcHHHHHHHHHHHHHhchhh-
Q 010290 279 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN------PELAIQHILPCVKE-LSSDSSQHVRSALATVIMGMAPIL- 350 (513)
Q Consensus 279 ~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~------~~~~~~~l~~~l~~-~~~d~~~~vr~~~~~~l~~l~~~~- 350 (513)
++++..+...+.+.+......+.-++|.+.+.-. ...+.+.++..+.+ --.|.+.++..+++.++..++--.
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 4688888888999998999999999999886422 22445566666543 445778888999999998876322
Q ss_pred CHHHH-HHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhh--hhh--hhhHHHHHHHhhcCCChh-HHHHHHHHHHHH
Q 010290 351 GKDAT-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLL--SQSLLPAIVELAEDRHWR-VRLAIIEYIPLL 424 (513)
Q Consensus 351 ~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--~~~--~~~l~~~l~~l~~~~~~~-vR~~~~~~l~~l 424 (513)
.+..+ ...+...++..++-..|.|...-..++.-+...... ..+ .+.++..+..-.+++++. +--...+.+..+
T Consensus 394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~l 473 (604)
T KOG4500|consen 394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGL 473 (604)
T ss_pred chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHH
Confidence 22222 123445566667766666655444444433221110 000 135666666666776654 444444444444
Q ss_pred HHHhChhh-----HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 010290 425 ASQLGVGF-----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 465 (513)
Q Consensus 425 ~~~~~~~~-----~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~ 465 (513)
+++..-.. .....+..+...+...+-...++|+-++..+..
T Consensus 474 IkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~ 519 (604)
T KOG4500|consen 474 IKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTES 519 (604)
T ss_pred HHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHH
Confidence 44311100 011134445555555566666666666555443
No 283
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=91.30 E-value=2 Score=35.46 Aligned_cols=92 Identities=17% Similarity=0.068 Sum_probs=52.6
Q ss_pred CChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhH--hhhhHHHHHhhhcC
Q 010290 409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVALIKSS 486 (513)
Q Consensus 409 ~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~--~~~i~~~L~~~~~~ 486 (513)
..-.+|.+|.+++..+...+....-...+++.+...+.| +..||.-+...+.+++........ .+.+.+.+...++.
T Consensus 39 DGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~ 117 (169)
T PF08623_consen 39 DGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSK 117 (169)
T ss_dssp GGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH-
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
Confidence 345677777777777766544433334466777777777 777777777777777654333222 24555555555532
Q ss_pred c-------------chHHHHHHHHHHHh
Q 010290 487 R-------------NLVLNSVLSLLKNA 501 (513)
Q Consensus 487 ~-------------~~~~r~~~~~~~~i 501 (513)
+ +-..|.+++++..+
T Consensus 118 k~k~~AvkQE~Ek~~E~~rs~lr~~~~l 145 (169)
T PF08623_consen 118 KLKENAVKQEIEKQQELIRSVLRAVKAL 145 (169)
T ss_dssp ---TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 2 23555666666655
No 284
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=91.24 E-value=6.5 Score=31.40 Aligned_cols=74 Identities=12% Similarity=-0.036 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhh----hHHHHHHHHHHhhhc------cchhHHHHHHHHHHHhhc
Q 010290 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQD------DQDSVRLLAVEGCGALGK 231 (513)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~d------~~~~vr~~a~~~l~~l~~ 231 (513)
.+.+..+.+-++++++.|...+...|..+.+.+|... ....++.-+.+++.+ .+..|+...+..+..++.
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4566777788889999999999999999999888632 233455556666642 467888888888888877
Q ss_pred cCCh
Q 010290 232 LLEP 235 (513)
Q Consensus 232 ~~~~ 235 (513)
.++.
T Consensus 117 ~f~~ 120 (139)
T cd03567 117 ELPH 120 (139)
T ss_pred Hhcc
Confidence 6654
No 285
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=91.14 E-value=5.3 Score=30.23 Aligned_cols=61 Identities=11% Similarity=-0.007 Sum_probs=40.7
Q ss_pred CChhHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh
Q 010290 409 RHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW 471 (513)
Q Consensus 409 ~~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~ 471 (513)
.+...|..++.+++.+.+..++. .+..+++-.+...+..+ ++|..+++++..+...++++.
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~ 89 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEED 89 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHH
Confidence 46677888888888888743332 23344555555555554 888888888888888887743
No 286
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=90.71 E-value=9.9 Score=32.56 Aligned_cols=108 Identities=16% Similarity=0.198 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhchhhCHHH--HHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChh
Q 010290 335 VRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 412 (513)
Q Consensus 335 vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~ 412 (513)
.-..+...++.+.+.+|... ....++..+.++-.+++...|..+-.+++..++.+|++.+. .++|.-.+. .+....
T Consensus 16 aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL-~~lPLnl~~-~~~~~~ 93 (198)
T PF08161_consen 16 AWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVL-SILPLNLDN-ADDSQP 93 (198)
T ss_pred HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHH-HHCCCCccC-CCcCCc
Confidence 33444555555555555431 22334444555566667788888888888888888887653 333322111 222223
Q ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHHHHHHH
Q 010290 413 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQW 444 (513)
Q Consensus 413 vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~ 444 (513)
-|...+=.+..-.....-.+|.++++|....+
T Consensus 94 ~raWLLPlLr~~i~~~~L~fF~~~~lPla~~~ 125 (198)
T PF08161_consen 94 GRAWLLPLLRDHIRNASLSFFVEEFLPLARRL 125 (198)
T ss_pred ccchhHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence 33333333333333334466777788877553
No 287
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=90.21 E-value=11 Score=32.27 Aligned_cols=64 Identities=22% Similarity=0.201 Sum_probs=44.3
Q ss_pred HHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 010290 205 SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (513)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 271 (513)
+.+.....+++.-+|..++..+...... +.....+++.+.....|++..|+.++..+|..++..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 5666677777777777777766554433 223455777777777777777888887777777654
No 288
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=90.02 E-value=12 Score=32.58 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=49.5
Q ss_pred HHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-----ccCCchHHHHHHHHHhhcccccccCc
Q 010290 13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-----NNDDDDEVLLAMAEELGVFIPYVGGL 81 (513)
Q Consensus 13 ~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-----~~~~~~~vr~~~~~~l~~~~~~~~~~ 81 (513)
.+...|.|.|+.+|..|++.|......-.......+++..-.. +..|.|.++...|..++.+...+...
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~ 77 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSE 77 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcCh
Confidence 4678899999999999999988776543221122333333333 56788999999999999988877654
No 289
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=89.99 E-value=5.9 Score=31.42 Aligned_cols=74 Identities=11% Similarity=0.142 Sum_probs=54.4
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHH----HHHHHHHHHHhcCch--hHHHHHHHHHHHHHHHHhCh
Q 010290 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLKDKV--YSIRDAAANNVKRLAEEFGP 469 (513)
Q Consensus 396 ~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~----~~~~~~l~~~l~d~~--~~VR~~a~~~l~~l~~~~~~ 469 (513)
...+..+..-+++++..+...|+..+..+++.+|..+.. ..++..+.+++.++. +.||..++..+..+...++.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 455566666667778888888888888888888776532 457777777776643 34999999999999988864
No 290
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=89.90 E-value=8.5 Score=30.54 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhh----hHHHHHHHHHHhhhccc--hhHHHHHHHHHHHhhccCC
Q 010290 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQDDQ--DSVRLLAVEGCGALGKLLE 234 (513)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~d~~--~~vr~~a~~~l~~l~~~~~ 234 (513)
-.+.+..+.+-++++++.+...+...+..+.+.+|... ....++..+.+++.+.. +.|+..++..+..++..+.
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 35567777788888899999999999999988887633 23345666666665532 2377777777777776654
No 291
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=89.72 E-value=6.2 Score=30.33 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=48.8
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHH----HHHHHHHHH------hcCchhHHHHHHHHHHHHHH
Q 010290 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD----KLGALCMQW------LKDKVYSIRDAAANNVKRLA 464 (513)
Q Consensus 396 ~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~----~~~~~l~~~------l~d~~~~VR~~a~~~l~~l~ 464 (513)
..++..+..-+.+++|.+...++..+..+++.+|+.+... .++..++++ -.+....||..+...+..+.
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 5677777777788899999999999999999988876432 222223221 12457789998888877653
No 292
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=89.26 E-value=10 Score=30.50 Aligned_cols=75 Identities=15% Similarity=0.076 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhh----hhHHHHHHHHHHhhh-ccchhHHHHHHHHHHHhhccCCh
Q 010290 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEP 235 (513)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~ 235 (513)
-.+.+..+.+-+.++++.+...+...|..+.+.+|.. .....++..+.+++. ..+..|+..++..+..++..+..
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 3456677777788888999988999888888887763 233445565666655 45567777777777777766554
No 293
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=88.73 E-value=15 Score=31.83 Aligned_cols=133 Identities=16% Similarity=0.170 Sum_probs=83.8
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCC-CCHHHHHHHHHHH-HHHHHHhCCCcccc
Q 010290 202 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQL-YELCEAVGPEPTRS 279 (513)
Q Consensus 202 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~~~vr~~~~~~l-~~l~~~~~~~~~~~ 279 (513)
.+..+...+.+.+.-+.|..|+..+.......+.+. ++.+...+.+ .+|.+....+..+ +.+... .+
T Consensus 46 ~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~-----~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~------~~ 114 (208)
T cd07064 46 ELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPED-----LPLLEELITTKSWWDTVDSLAKVVGGILLAD------YP 114 (208)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHHH-----HHHHHHHHcCCchHHHHHHHHHHHhHHHHhC------Ch
Confidence 344444556666667888888887776554444332 3444444433 4787777655433 333211 23
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchh
Q 010290 280 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI 349 (513)
Q Consensus 280 ~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 349 (513)
...+.+.....+++.-+|.+|+.+.-.+.+.... +.+...+...+.|+..-|+.++..+|..+++.
T Consensus 115 ~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~~----~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 115 EFEPVMDEWSTDENFWLRRTAILHQLKYKEKTDT----DLLFEIILANLGSKEFFIRKAIGWALREYSKT 180 (208)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccCH----HHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence 4567778888888888888887665444443222 34455666777888888999999998888764
No 294
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.58 E-value=29 Score=34.96 Aligned_cols=284 Identities=15% Similarity=0.146 Sum_probs=142.0
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhh-----------------------hhHHHHHH----HHHHh---h
Q 010290 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA-----------------------HLKSEIMS----IFEEL---T 211 (513)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-----------------------~~~~~l~~----~l~~l---~ 211 (513)
...+..+.+++.+.++.+++-+.-+|-.+.+.+-|. .+...++. ++.++ .
T Consensus 209 ~~~L~~l~eml~s~n~~~~Kl~~lSLlaVFKDIiP~YkIR~lte~Ek~~k~sKev~klr~yE~~Ll~~Yk~ylQkLe~~v 288 (704)
T KOG2153|consen 209 LKKLKELFEMLDSQNPKAKKLALLSLLAVFKDIIPGYKIRPLTEKEKRTKLSKEVLKLREYEQALLKQYKSYLQKLEQFV 288 (704)
T ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhcccceecccHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777788888888888887777776655331 01111222 22222 2
Q ss_pred hcc---c---hhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHH
Q 010290 212 QDD---Q---DSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAY 285 (513)
Q Consensus 212 ~d~---~---~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l 285 (513)
.+. . -..-..|.+|+..+....+--.+.+.++..+....+++...++..++.++..+...-+.....-.++..+
T Consensus 289 K~~~~~~~~~v~l~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D~~g~~sl~~Vr~i 368 (704)
T KOG2153|consen 289 KDLSLRTPQQVSLAQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFENDNGGSGSLAIVRII 368 (704)
T ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCCccchhHHHHHHH
Confidence 222 0 0123356666666666655555667788888888888888888898888888765433222222344555
Q ss_pred HHhcCCCcHHHHHHHHHhHHHHHh--hhCh-HH-------HHHhhhhhhhhhcCCCcHHHHHHH-HHHHHHh----ch--
Q 010290 286 VRLLRDNEAEVRIAAAGKVTKICR--ILNP-EL-------AIQHILPCVKELSSDSSQHVRSAL-ATVIMGM----AP-- 348 (513)
Q Consensus 286 ~~~l~d~~~~vr~~a~~~l~~~~~--~~~~-~~-------~~~~l~~~l~~~~~d~~~~vr~~~-~~~l~~l----~~-- 348 (513)
..+++-.+.+|...++..+..+-- ..+. ++ ...........+ + +..+-|.-- -..=..+ +.
T Consensus 369 ~~llK~rn~~v~~~~~~~~lsLri~ed~~~k~ke~~~k~~~~k~~k~k~~~l-s-kK~RK~kKe~~ki~rE~reaea~e~ 446 (704)
T KOG2153|consen 369 NSLLKTRNYEVLPDMITTFLSLRIDEDQTKKDKEDEKKQKNKKSSKKKLSSL-S-KKERKRKKERNKIEREMREAEAEES 446 (704)
T ss_pred HHHhhhhcccchhhHHHHHHhcchhhhccchhhhccchhhhHHHHHHHHhhc-c-HHHHHHHHHHHHHHHHhhhhhcccc
Confidence 555554444454444443333210 0000 00 000000000000 0 000100000 0000000 00
Q ss_pred ----hhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHH--HHHHHHH
Q 010290 349 ----ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL--AIIEYIP 422 (513)
Q Consensus 349 ----~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~--~~~~~l~ 422 (513)
.-........++..++..|++....+--++...+..+......+.+ ..++..+.+++.|.....|. .+++.+-
T Consensus 447 aeek~k~~sEiLkiVFtiYFrILkn~~~tll~~vlEGlakf~h~invef~-~dll~vlk~ll~d~~~~~re~l~cvqtaf 525 (704)
T KOG2153|consen 447 AEEKMKKQSEILKIVFTIYFRILKNDRYTLLGAVLEGLAKFAHLINVEFL-GDLLKVLKELLEDIELSYREALLCVQTAF 525 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhhHHHHhhhccHHHh-hhHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 0000112345666777888876555666777777777666555544 67888888888888544444 4444444
Q ss_pred HHHHHhCh------hhHHHHHHHHHHHHhcCc
Q 010290 423 LLASQLGV------GFFDDKLGALCMQWLKDK 448 (513)
Q Consensus 423 ~l~~~~~~------~~~~~~~~~~l~~~l~d~ 448 (513)
.++..-|. .-|.+++...+..+-.++
T Consensus 526 ~IlS~qg~~lniD~~~fv~~lY~~l~~~~~~~ 557 (704)
T KOG2153|consen 526 CILSGQGEKLNIDLGKFVDHLYKMLFPMNLGP 557 (704)
T ss_pred HhhhccceeeccCHHHHHHHHHHHhcccccCC
Confidence 44444333 234555555555544333
No 295
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=88.56 E-value=29 Score=34.93 Aligned_cols=158 Identities=12% Similarity=0.116 Sum_probs=92.6
Q ss_pred cChHHHHhhHHHHHHHhhcCCC--cchhhhHHhhhHhhcCCCCHHHH----HHHHHHHHHHcC-----CCchHHHHHHHH
Q 010290 117 MREQDVVEHFIPLVKRLAAGEW--FTARVSSCGLFHVAYPSAPEALK----TELRTIYRQLCQ-----DDMPMVRRSAAT 185 (513)
Q Consensus 117 ~~~~~~~~~~~~~l~~l~~d~~--~~~R~~~~~~l~~~~~~~~~~~~----~~l~~~l~~l~~-----d~~~~vr~~a~~ 185 (513)
+...+.+.+++..+.....++. |.--...|.+++.+...+++... -.++.-++.+|. |.-.-|......
T Consensus 473 L~v~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMy 552 (1053)
T COG5101 473 LIVDDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMY 552 (1053)
T ss_pred hhhhhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceee
Confidence 3344555666666665555554 44455677888888888877722 233344444442 222222222222
Q ss_pred hHHHHHHHhhh-hhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCh----------hhhhhhHHHHHHHhcCCCC
Q 010290 186 NLGKFAATVEA-AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----------QDCVAHILPVIVNFSQDKS 254 (513)
Q Consensus 186 ~l~~l~~~~~~-~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----------~~~~~~l~~~l~~~~~d~~ 254 (513)
.+|+.-+.+.. -.+...++.-+.+.+....+-|+..|+.+.-.+.+.++- +.+...++.-+.+...|-.
T Consensus 553 vvGQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~ 632 (1053)
T COG5101 553 VVGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLE 632 (1053)
T ss_pred eeccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCC
Confidence 23333222211 223444555556667777888999999999888877653 3444556666666667778
Q ss_pred HHHHHHHHHHHHHHHHHhCC
Q 010290 255 WRVRYMVANQLYELCEAVGP 274 (513)
Q Consensus 255 ~~vr~~~~~~l~~l~~~~~~ 274 (513)
+.-....-++++.+....+.
T Consensus 633 pqQ~htfYeAcg~vIse~p~ 652 (1053)
T COG5101 633 PQQKHTFYEACGMVISEVPK 652 (1053)
T ss_pred hHHHhHHHHHHhHHHhccch
Confidence 87777888888877765443
No 296
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=88.49 E-value=18 Score=32.53 Aligned_cols=137 Identities=14% Similarity=0.127 Sum_probs=78.6
Q ss_pred HHHHHHhcCCCC-----hHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHH
Q 010290 360 LPIFLSLLKDEF-----PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD 434 (513)
Q Consensus 360 ~~~l~~~l~d~~-----~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~ 434 (513)
+|.+...+.++. +.++ .++..++.+++..|.. .+-..+..+.+..-.......-+++..+...+.++. .
T Consensus 113 LP~ll~~~d~~~~i~~~~~~~-~~A~~La~~a~~~~~~----~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~-~ 186 (262)
T PF14225_consen 113 LPRLLHAFDDPNPIQPDQECI-EIAEALAQVAEAQGLP----NLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDH-E 186 (262)
T ss_pred HHHHHHHhcccccccccHHHH-HHHHHHHHHHHhCCCc----cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchh-H
Confidence 455555555554 3444 4557788887654432 334444444333332222223333344444443332 2
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh-HhhhhHHHHHhhhcCcchHHH-HHHHHHHHhc
Q 010290 435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW-AMQHIVPQVALIKSSRNLVLN-SVLSLLKNAG 502 (513)
Q Consensus 435 ~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~-~~~~i~~~L~~~~~~~~~~~r-~~~~~~~~i~ 502 (513)
.+++..++.++..+.+++|..+.+.+..+.....-.. ....++..|.++++.+.+..- .+++.+-.++
T Consensus 187 ~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 187 FQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLWMEALEVLDEIVTRS 256 (262)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccHHHHHHHHHHHHhhc
Confidence 3477888999999999999999999999988654321 234577777888877554443 4444444433
No 297
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=88.39 E-value=25 Score=33.90 Aligned_cols=145 Identities=14% Similarity=0.094 Sum_probs=80.8
Q ss_pred HHHHHHHhcCccH--HHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-c-cCCchHHHHHHHHHhhcccccccCch---h
Q 010290 11 IAVLIDELKNDDI--QLRLNSIRRLSTIARALGEERTRKELIPFLSE-N-NDDDDEVLLAMAEELGVFIPYVGGLE---Y 83 (513)
Q Consensus 11 i~~l~~~l~~~d~--~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~-~~~~~~vr~~~~~~l~~~~~~~~~~~---~ 83 (513)
+..++.-+++++. ++|.+|.+.|.++.....-+.+...=+..+.. . ....++..+..+..++.+.+.....- .
T Consensus 182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lv 261 (832)
T KOG3678|consen 182 LDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLV 261 (832)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4456666676654 56999999999887655544433322333344 2 23556778888888888777532110 1
Q ss_pred hhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChH----HHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCC
Q 010290 84 ANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ----DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPS 155 (513)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~ 155 (513)
....+..+.......++.+-..++-+|++.+-+-..+ .++..+-..+..+....+.-.|+.+|-....++.+
T Consensus 262 aa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 262 AAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN 337 (832)
T ss_pred hhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence 1112222222333444554444445677665543322 22333334444555566778899998887777654
No 298
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=88.26 E-value=18 Score=32.16 Aligned_cols=146 Identities=15% Similarity=0.137 Sum_probs=67.5
Q ss_pred cCCCcHHHHHHHHHhHHHHHhhh----Ch----HH---HHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHH
Q 010290 289 LRDNEAEVRIAAAGKVTKICRIL----NP----EL---AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE 357 (513)
Q Consensus 289 l~d~~~~vr~~a~~~l~~~~~~~----~~----~~---~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 357 (513)
++|+++.|.+.++.+...+...+ .. +. ....+-..+.....+.++.+|..++..+..+.-........+
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 45566666666665555544321 00 00 112222334455667788888888888877765443321100
Q ss_pred hH-----HHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCC--hhHHHHHHHHHHHHHHHhCh
Q 010290 358 QL-----LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH--WRVRLAIIEYIPLLASQLGV 430 (513)
Q Consensus 358 ~l-----~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~--~~vR~~~~~~l~~l~~~~~~ 430 (513)
.- -..-+..+-...+-+....++ .-.+.++..|...+.++. ..+-.+++.+++.+++. .
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le------------~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~--R 147 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPLLNPQQLE------------AEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQ--R 147 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SSS-HHHHH------------HHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHH--S
T ss_pred ccccccccCCCHHHcCCCCCcCCHHHHH------------HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH--h
Confidence 00 000000111111111111111 011345556666555543 55666777777777765 3
Q ss_pred hhHHHHHHHHHHHHhcCc
Q 010290 431 GFFDDKLGALCMQWLKDK 448 (513)
Q Consensus 431 ~~~~~~~~~~l~~~l~d~ 448 (513)
..+...+++.+..+-.+.
T Consensus 148 P~~~~~Il~~ll~~~~~~ 165 (239)
T PF11935_consen 148 PQFMSRILPALLSFNPNL 165 (239)
T ss_dssp GGGHHHHHHHHHHHHHS-
T ss_pred hHHHHHHHHHHHhcCccc
Confidence 334567888888865543
No 299
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=88.24 E-value=29 Score=34.71 Aligned_cols=141 Identities=19% Similarity=0.142 Sum_probs=87.2
Q ss_pred HHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhh----hhh
Q 010290 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD----CVA 240 (513)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~ 240 (513)
-..+.+...|.++.+|..+...++..+..++.-...-..+.+.--++.|.+..||....+.+..++...+..+ +..
T Consensus 277 dsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~e 356 (740)
T COG5537 277 DSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVE 356 (740)
T ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 4455566788899999999999998887766433332333344446789999999999999999998877543 222
Q ss_pred hHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHh
Q 010290 241 HILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR 309 (513)
Q Consensus 241 ~l~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~ 309 (513)
.+...+.+.+ .|.+- ||....+.+..+... |.- ...-+-.+..++-|..+.-|....+.+..+++
T Consensus 357 RFk~rILE~~r~D~d~-VRi~sik~l~~lr~l-g~L--~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 357 RFKDRILEFLRTDSDC-VRICSIKSLCYLRIL-GVL--SSSEILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHHHHHHHHHhhccch-hhHHHHHHHHHHHHh-ccc--chhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 3333344433 45555 999888888777542 221 12223334444555555544444444444444
No 300
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=88.07 E-value=8.5 Score=29.07 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=50.3
Q ss_pred HHHHHHHHcCCCc----hHHHHHHHHhHHHHHHHhhhh--hhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhh
Q 010290 164 LRTIYRQLCQDDM----PMVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD 237 (513)
Q Consensus 164 l~~~l~~l~~d~~----~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~ 237 (513)
++..|.+.+.|.+ ..-|+.+..+++.+.+..|+. .+.+++.-.|...+. .++.|..+++++..+...+++++
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~ 89 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEE 89 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHH
Confidence 4555555555544 345889999999999876642 233444445555554 55799999999999999988765
Q ss_pred h
Q 010290 238 C 238 (513)
Q Consensus 238 ~ 238 (513)
.
T Consensus 90 l 90 (107)
T smart00802 90 L 90 (107)
T ss_pred H
Confidence 3
No 301
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=87.52 E-value=38 Score=35.02 Aligned_cols=366 Identities=15% Similarity=0.098 Sum_probs=178.9
Q ss_pred HhhccchhHHHHHHHHHHHHHHhhcCh--HHHHh-hHHHHHHHhhcCCCcchhhhHHhhhHhhc-CCCCHH------HHH
Q 010290 93 TLCTVEETCVRDKAVESLCRIGSQMRE--QDVVE-HFIPLVKRLAAGEWFTARVSSCGLFHVAY-PSAPEA------LKT 162 (513)
Q Consensus 93 ~l~~~~~~~vR~~a~~~l~~l~~~~~~--~~~~~-~~~~~l~~l~~d~~~~~R~~~~~~l~~~~-~~~~~~------~~~ 162 (513)
..+...++.+...|..-+..++-.-.+ ..+.+ .-+|.+..+.......++..+|.++..++ ...+++ ..+
T Consensus 240 ~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~ 319 (717)
T KOG1048|consen 240 SMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELN 319 (717)
T ss_pred HHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcC
Confidence 344566677777766666666543222 11111 14567777788888888888888887654 333311 122
Q ss_pred HHHHHHHHHcC-CCchHHHHHHHHhHHHHHHH--hhhhhhHHHHHHHHHHhh------hcc-------chhHHHHHHHHH
Q 010290 163 ELRTIYRQLCQ-DDMPMVRRSAATNLGKFAAT--VEAAHLKSEIMSIFEELT------QDD-------QDSVRLLAVEGC 226 (513)
Q Consensus 163 ~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~l~------~d~-------~~~vr~~a~~~l 226 (513)
. ++.+..++. -.|.+||+.+...|=++... +......+.+..+..+.+ .++ ...|-..+..||
T Consensus 320 G-v~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcL 398 (717)
T KOG1048|consen 320 G-VPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCL 398 (717)
T ss_pred C-hHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhh
Confidence 2 233344443 35677888777666665543 111111111111111111 011 123334445555
Q ss_pred HHhhccCCh--------hhhhhhHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCc--
Q 010290 227 GALGKLLEP--------QDCVAHILPVIVNFSQ---DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE-- 293 (513)
Q Consensus 227 ~~l~~~~~~--------~~~~~~l~~~l~~~~~---d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~-- 293 (513)
.++...-.+ +...+.++-.+....+ -++..|. .++..+.++...+..+ +.+.+.+.+...+
T Consensus 399 RNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VE-NcvCilRNLSYrl~~E-----vp~~~~~~~~~~~~~ 472 (717)
T KOG1048|consen 399 RNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVE-NCVCILRNLSYRLEAE-----VPPKYRQVLANIARL 472 (717)
T ss_pred ccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHH-HHHHHHhhcCchhhhh-----cCHhhhhHhhccccc
Confidence 544432111 0112334444443332 2233343 4444555555443332 2222222221111
Q ss_pred HHHHH--HHHHhHHHHHhhh-----------------ChH-HHHHhhhh-hhhhhcCCCcHHHHHHHHHHHHHhchhhCH
Q 010290 294 AEVRI--AAAGKVTKICRIL-----------------NPE-LAIQHILP-CVKELSSDSSQHVRSALATVIMGMAPILGK 352 (513)
Q Consensus 294 ~~vr~--~a~~~l~~~~~~~-----------------~~~-~~~~~l~~-~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~ 352 (513)
..+.. ....+++.-.+.. |.+ .+.+.++. ++.-+....+..+-++++.+|..+....+.
T Consensus 473 ~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~ 552 (717)
T KOG1048|consen 473 PGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT 552 (717)
T ss_pred ccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc
Confidence 00000 1111122111110 011 12223332 233333456778888888888887643322
Q ss_pred -------HH-HHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHHHhhcCC------ChhHHHHH
Q 010290 353 -------DA-TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-LLSQSLLPAIVELAEDR------HWRVRLAI 417 (513)
Q Consensus 353 -------~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~-~~~~~l~~~l~~l~~~~------~~~vR~~~ 417 (513)
.. ..+..+|.+..++..++..|..+++.+|..+....... .+....+|.|...+-+. +|++-.++
T Consensus 553 ~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~v 632 (717)
T KOG1048|consen 553 WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAV 632 (717)
T ss_pred chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHH
Confidence 11 23567899999999999999999999999987654432 34467778887776543 46777778
Q ss_pred HHHHHHHHHH-hCh--hhHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHH
Q 010290 418 IEYIPLLASQ-LGV--GFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAE 465 (513)
Q Consensus 418 ~~~l~~l~~~-~~~--~~~~~~~~~~l~~~l~-d~~~~VR~~a~~~l~~l~~ 465 (513)
|..+..+... ... +.+...-++.+..+.. --++.+-++|...+..+..
T Consensus 633 c~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 633 CHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ 684 (717)
T ss_pred HHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 8888777632 111 1122223444444333 2344566666666666544
No 302
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=87.17 E-value=21 Score=31.73 Aligned_cols=88 Identities=19% Similarity=0.265 Sum_probs=53.9
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChh-----------------------------h---HHHHHHHHHHHH
Q 010290 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-----------------------------F---FDDKLGALCMQW 444 (513)
Q Consensus 397 ~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~-----------------------------~---~~~~~~~~l~~~ 444 (513)
.+...+..+..+.++.+|..++.++..++-..... . -...++..++..
T Consensus 43 ~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~ 122 (239)
T PF11935_consen 43 ELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDV 122 (239)
T ss_dssp HHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 34445555566666677777777776665432110 0 013477777777
Q ss_pred hcCch--hHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhhcC
Q 010290 445 LKDKV--YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKSS 486 (513)
Q Consensus 445 l~d~~--~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~~ 486 (513)
+.++. +.+-.+.++++..|++. .+.+ ...+++.|..+-.+
T Consensus 123 l~~~~i~~~~~~a~insL~~Iak~-RP~~-~~~Il~~ll~~~~~ 164 (239)
T PF11935_consen 123 LQSPHISSPLLTAIINSLSNIAKQ-RPQF-MSRILPALLSFNPN 164 (239)
T ss_dssp HC-TT--HHHHHHHHHHHHHHHHH-SGGG-HHHHHHHHHHHHHS
T ss_pred HhhcccchHHHHHHHHHHHHHHHH-hhHH-HHHHHHHHHhcCcc
Confidence 76655 66777788888888775 4443 46888888876653
No 303
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=87.16 E-value=37 Score=34.53 Aligned_cols=163 Identities=13% Similarity=0.068 Sum_probs=78.3
Q ss_pred HHHHHHHHHhhcccccccCchhhhhhhHHHHHhhccchhHHHH---HHHHHHHHHHhhcCh-HHHHhh--HHHHHHHhhc
Q 010290 62 EVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRD---KAVESLCRIGSQMRE-QDVVEH--FIPLVKRLAA 135 (513)
Q Consensus 62 ~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~---~a~~~l~~l~~~~~~-~~~~~~--~~~~l~~l~~ 135 (513)
.+....|+.||.+++..- ....+-.+.-|+.+..+.+ ..+. ..+.++..+--...+ +.+++- ++..+.++..
T Consensus 62 ~~~~l~AellG~lS~~rF-~sVsdRF~~eL~~~~~~~~-~~~~~~~~li~GMr~lrlk~~p~e~~e~s~~Fm~~l~~~f~ 139 (552)
T PF14222_consen 62 ANWDLFAELLGVLSEIRF-VSVSDRFIAELEKLRKDSN-DAESKIELLIMGMRYLRLKMYPEEAFEESAEFMQSLAKFFL 139 (552)
T ss_pred HHHHHHHHHHHHHHhhhC-hHHHHHHHHHHHHhcccCC-chHHHHHHHHhhcceeeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 355667788888877421 1223334444555443222 2222 223333333323333 433322 3333433333
Q ss_pred C--CCcchhhhHHhhhHhhc----CCCCHH----H----HHHHHHHHHHHcCCC-chHHHHHHHHhHHHHHHHhhhhhhH
Q 010290 136 G--EWFTARVSSCGLFHVAY----PSAPEA----L----KTELRTIYRQLCQDD-MPMVRRSAATNLGKFAATVEAAHLK 200 (513)
Q Consensus 136 d--~~~~~R~~~~~~l~~~~----~~~~~~----~----~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~ 200 (513)
+ ....++.+.|+++..+. .....+ . ...+.+...+++..+ .|.+ +.-....+...-+++.+.
T Consensus 140 ~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K~khw~~---afPL~t~lLCvS~~e~F~ 216 (552)
T PF14222_consen 140 EAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSKPKHWNV---AFPLVTTLLCVSPKEFFL 216 (552)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhCcchhhh---HHHHHHHHHhcCcHHHHH
Confidence 2 34568888888776543 222221 2 234455555555542 3333 333333333333445555
Q ss_pred HHHH----HHHHHhhhccchhHHHHHHHHHHHhhc
Q 010290 201 SEIM----SIFEELTQDDQDSVRLLAVEGCGALGK 231 (513)
Q Consensus 201 ~~l~----~~l~~l~~d~~~~vr~~a~~~l~~l~~ 231 (513)
+.-. ..+...++|. ..|..++.++.++.=
T Consensus 217 ~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLlW 249 (552)
T PF14222_consen 217 SNWLPSLIESLISKLKDK--ETRPVALECLSRLLW 249 (552)
T ss_pred HHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHHH
Confidence 4444 3333345554 788999998887663
No 304
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=86.69 E-value=15 Score=29.50 Aligned_cols=75 Identities=7% Similarity=0.112 Sum_probs=53.6
Q ss_pred hhHHHHHHHhhc-CCChhHHHHHHHHHHHHHHHhChhhHH----HHHHHH-HHHHhcC---chhHHHHHHHHHHHHHHHH
Q 010290 396 QSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGAL-CMQWLKD---KVYSIRDAAANNVKRLAEE 466 (513)
Q Consensus 396 ~~l~~~l~~l~~-~~~~~vR~~~~~~l~~l~~~~~~~~~~----~~~~~~-l~~~l~d---~~~~VR~~a~~~l~~l~~~ 466 (513)
...+..+..-++ +++..+-..++..+..+++.+|..+.. ..++.. +.+++.+ ....|+...+..+..+...
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 344555555444 457777777888888888888877643 456765 7777763 3458999999999999988
Q ss_pred hChh
Q 010290 467 FGPD 470 (513)
Q Consensus 467 ~~~~ 470 (513)
++.+
T Consensus 117 f~~~ 120 (141)
T cd03565 117 FRGS 120 (141)
T ss_pred hCCC
Confidence 8653
No 305
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=86.48 E-value=3.3 Score=34.19 Aligned_cols=61 Identities=21% Similarity=0.157 Sum_probs=44.5
Q ss_pred CCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCh
Q 010290 174 DDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 235 (513)
Q Consensus 174 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (513)
|..-++|++|.+++..+...+....-...+++.+...+.| +.++|..+...+..++...+.
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~ 98 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPE 98 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHH
Confidence 4556889999999888887665544556677777778888 788888888888888766544
No 306
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=85.22 E-value=17 Score=28.82 Aligned_cols=75 Identities=17% Similarity=0.083 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhh----HHHHHHHHHHhhhc---cchhHHHHHHHHHHHhhccC
Q 010290 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHL----KSEIMSIFEELTQD---DQDSVRLLAVEGCGALGKLL 233 (513)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~l~~d---~~~~vr~~a~~~l~~l~~~~ 233 (513)
..+.+..+.+-++++++.++..+...|..+.+.+|+... ....+.-+.+++.. .+..||..+++.+..+...+
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 345667777778888888888888888888888776321 11333334455543 35667777777777777665
Q ss_pred Ch
Q 010290 234 EP 235 (513)
Q Consensus 234 ~~ 235 (513)
+.
T Consensus 115 ~~ 116 (133)
T cd03561 115 GG 116 (133)
T ss_pred cC
Confidence 54
No 307
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.39 E-value=18 Score=40.34 Aligned_cols=133 Identities=16% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcChHHHHhh------HHHHHHHhhc--CCCcchhhhHHhhhHhhcCCCCHHH--HHHHHHHHHHHc
Q 010290 103 RDKAVESLCRIGSQMREQDVVEH------FIPLVKRLAA--GEWFTARVSSCGLFHVAYPSAPEAL--KTELRTIYRQLC 172 (513)
Q Consensus 103 R~~a~~~l~~l~~~~~~~~~~~~------~~~~l~~l~~--d~~~~~R~~~~~~l~~~~~~~~~~~--~~~l~~~l~~l~ 172 (513)
+..+..++..+...-....+... ..|.+.++.+ -.....++...-+.+.++....-.. +..+...++.-.
T Consensus 1471 ~~Lvl~cl~~~~~~Dt~~~f~t~~r~~~~~~p~v~ql~n~~~e~~~~~~v~~~li~~i~~~~~a~~~d~~pl~~k~l~~t 1550 (1621)
T KOG1837|consen 1471 GTLVLNCLKDLFLFDTIESFVTKSRFELLSYPLVSQLVNVLLEFYASDIVSKLLIAEIASDSVADKDDLKPLNQKILKKT 1550 (1621)
T ss_pred HHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhhHHHHHHhhccchhhhHHHHHHHHHHHhhccCChhhhHHHHHHHHHHh
Q ss_pred CCCchHHHHHHHHhHHHHHHHhhh--hhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCh
Q 010290 173 QDDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 235 (513)
Q Consensus 173 ~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (513)
.|.+...|..+...+..+...+|. ....+.++|.+.+++.|++++|...+...+..+-+.+|+
T Consensus 1551 rss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1551 RSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhch
No 308
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=84.20 E-value=13 Score=26.74 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHc-CCCchHHHHHHHHhHHHHHHHhhhh--hhHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 010290 160 LKTELRTIYRQLC-QDDMPMVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDDQDSVRLLAVEGCG 227 (513)
Q Consensus 160 ~~~~l~~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~ 227 (513)
....++.+|...+ ..++..||....+++..+....+.. .-++.++..+.....|+++.+-..|.+++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 4567777777764 4568899999999999998876642 235667777777777777777777776654
No 309
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=83.31 E-value=1.4 Score=24.18 Aligned_cols=29 Identities=34% Similarity=0.339 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC
Q 010290 255 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD 291 (513)
Q Consensus 255 ~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d 291 (513)
|.||..++.+|+++. .+..++.+...++|
T Consensus 1 ~~vR~~aa~aLg~~~--------~~~a~~~L~~~l~d 29 (30)
T smart00567 1 PLVRHEAAFALGQLG--------DEEAVPALIKALED 29 (30)
T ss_pred CHHHHHHHHHHHHcC--------CHhHHHHHHHHhcC
Confidence 456666666666653 23445555555544
No 310
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=83.03 E-value=23 Score=34.92 Aligned_cols=147 Identities=10% Similarity=0.065 Sum_probs=94.5
Q ss_pred hhhhhhhhhcCCCcHHHHHHHHHHHHHhc---hhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhh---
Q 010290 319 HILPCVKELSSDSSQHVRSALATVIMGMA---PILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--- 392 (513)
Q Consensus 319 ~l~~~l~~~~~d~~~~vr~~~~~~l~~l~---~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--- 392 (513)
.+...+.+.+++|+..+...+...+..+. ..++..+....++..+.+++..++...|....+.+..+.-....+
T Consensus 431 ~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf 510 (743)
T COG5369 431 PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKF 510 (743)
T ss_pred chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhh
Confidence 44455667777777776665555544443 234556666788999999998888899988888888776544332
Q ss_pred -hhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhCh-h----hH-----HHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010290 393 -LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-G----FF-----DDKLGALCMQWLKDKVYSIRDAAANNVK 461 (513)
Q Consensus 393 -~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~-~----~~-----~~~~~~~l~~~l~d~~~~VR~~a~~~l~ 461 (513)
.+...=+..+.++.+|+.|.+...+++.+..+.-.-.. + ++ ...+...+..-+...+|---+..+..+.
T Consensus 511 ~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv 590 (743)
T COG5369 511 KFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILV 590 (743)
T ss_pred hhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHH
Confidence 23344556788899999999999999999887642111 1 11 1235555555555555544444455554
Q ss_pred HHHH
Q 010290 462 RLAE 465 (513)
Q Consensus 462 ~l~~ 465 (513)
.++.
T Consensus 591 ~~aa 594 (743)
T COG5369 591 RNAA 594 (743)
T ss_pred HHHh
Confidence 4444
No 311
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=83.00 E-value=20 Score=27.83 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=25.1
Q ss_pred HHhHHHHHHHhcC-CCChHHHHHHHHHHHHhhhhhh
Q 010290 356 IEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIG 390 (513)
Q Consensus 356 ~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~i~~~~~ 390 (513)
...++|.+.+.++ ...++.|.++...++.++....
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~ 39 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP 39 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC
Confidence 4567788888777 6677888888777777766543
No 312
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.62 E-value=41 Score=31.15 Aligned_cols=106 Identities=13% Similarity=0.097 Sum_probs=55.1
Q ss_pred HHHHHHhcCC-CcHHHHHHHHHhHHHHHhhhChHHHHHh-----hhhhhhhhc--CCCcHHHHHHHHHHHHHhchhhCHH
Q 010290 282 VPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPELAIQH-----ILPCVKELS--SDSSQHVRSALATVIMGMAPILGKD 353 (513)
Q Consensus 282 l~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~-----l~~~l~~~~--~d~~~~vr~~~~~~l~~l~~~~~~~ 353 (513)
+..+++++.| ++..+|..+-.+++.+...-|.+..... -.+.+..++ ...++.|-..++.++.-++-..+..
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdh 364 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDH 364 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcch
Confidence 4566777777 4567776666666666555555433222 233443332 2456777777777776665332211
Q ss_pred ---HHHHhHHHHHHHhcCCC--ChHHHHHHHHHHHHhhh
Q 010290 354 ---ATIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQ 387 (513)
Q Consensus 354 ---~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~i~~ 387 (513)
.+....-....+.++-. ...|+.+++..+.+++.
T Consensus 365 sa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 365 SAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV 403 (461)
T ss_pred HHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 11111222333333332 24567777777666644
No 313
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=82.54 E-value=2.4 Score=25.06 Aligned_cols=28 Identities=18% Similarity=0.058 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 010290 437 LGALCMQWLKDKVYSIRDAAANNVKRLA 464 (513)
Q Consensus 437 ~~~~l~~~l~d~~~~VR~~a~~~l~~l~ 464 (513)
.+|.+.+++.++++.++..++.++..++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5666777777777777777777777654
No 314
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=82.23 E-value=74 Score=33.90 Aligned_cols=138 Identities=9% Similarity=0.019 Sum_probs=74.7
Q ss_pred CCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhh---cChHHHHhh----HHHHH
Q 010290 58 DDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQ---MREQDVVEH----FIPLV 130 (513)
Q Consensus 58 ~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~---~~~~~~~~~----~~~~l 130 (513)
..++.+|......+..+...-. -......+|-+..++-++++.+|.=|...+..+... ++.+.+... +...+
T Consensus 93 r~~~~l~~~F~~~f~~~~~~~~-~~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l 171 (727)
T PF12726_consen 93 RDDEELRELFDAIFSSLQSKKP-LKLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHL 171 (727)
T ss_pred cCcHHHHHHHHHHHHHHhccCC-ccccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHH
Confidence 3445566655555554443211 112267788888888899999999999999988765 555555433 33333
Q ss_pred HHhhcC-CCcchhhhHHhhhHhhcCCCCHHHH----H-----HHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh
Q 010290 131 KRLAAG-EWFTARVSSCGLFHVAYPSAPEALK----T-----ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA 196 (513)
Q Consensus 131 ~~l~~d-~~~~~R~~~~~~l~~~~~~~~~~~~----~-----~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 196 (513)
..+... .++..-..--..+..+.+.++.+.. . .+...+..-+.+.....-....+++..+.+..|.
T Consensus 172 ~~i~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~ 247 (727)
T PF12726_consen 172 YRISPNNYNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGS 247 (727)
T ss_pred HHhccCCCChhHHHHHHHHHHHHHHHccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHH
Confidence 344111 1111111122334455566666511 1 1444555555555344445667777777776664
No 315
>KOG1926 consensus Predicted regulator of rRNA gene transcription (MYB-binding protein) [Transcription]
Probab=82.15 E-value=81 Score=34.30 Aligned_cols=64 Identities=16% Similarity=0.117 Sum_probs=49.9
Q ss_pred HHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccc
Q 010290 13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIP 76 (513)
Q Consensus 13 ~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~ 76 (513)
.+...|.+.+..+|.+|+..|..-...+.......+.+..+.. +.++-..+|...+.+++.+..
T Consensus 77 dlf~klas~l~~~r~~aa~~Ll~~lq~~~~ae~~~YvL~RLIrg~ss~resaRlgfs~~Ltev~~ 141 (1129)
T KOG1926|consen 77 DLFTKLASSLRPVRLAAAFQLLADLQELRDAEELSYVLNRLIRGLSSDRESARLGFSLILTEVLR 141 (1129)
T ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhc
Confidence 4667788999999999998887665555555556666666666 778888899999999998774
No 316
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=82.05 E-value=51 Score=31.90 Aligned_cols=149 Identities=15% Similarity=0.118 Sum_probs=85.7
Q ss_pred cchHHHHHHhcCCCc--HHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHHhchhhCHHH-
Q 010290 279 SDVVPAYVRLLRDNE--AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS-SQHVRSALATVIMGMAPILGKDA- 354 (513)
Q Consensus 279 ~~ll~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~~- 354 (513)
+.-+..+++++..++ ..||..|.+.|..+...-..+.+...=+..+..+.+.. -....+..+..++.+-++.....
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~ 258 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQ 258 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHH
Confidence 445666777776665 45788888888877665444433332233444444332 34555666667776665543321
Q ss_pred --HHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhh----hhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 010290 355 --TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (513)
Q Consensus 355 --~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~----~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~ 427 (513)
+....+..++-.++..++.+-..++-+|+++.-.-|... +.+.+-.-+..+..+.+.-.|..||.++..++..
T Consensus 259 ~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 259 RLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN 337 (832)
T ss_pred HHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence 122334555556666778888888888888765433221 2223333344455556677788888777776643
No 317
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=81.85 E-value=7.8 Score=37.90 Aligned_cols=109 Identities=8% Similarity=0.117 Sum_probs=80.3
Q ss_pred HhHHHHHHHhcCCCChHHHHHHHHHHHHhh---hhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChh--
Q 010290 357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVN---QVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-- 431 (513)
Q Consensus 357 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~---~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~-- 431 (513)
..+...+++.|.+++..|...+...+...+ +.+|...+...++..+..++.+++...|....+.+-.+...+.+.
T Consensus 430 ~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek 509 (743)
T COG5369 430 YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK 509 (743)
T ss_pred cchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence 457778889998876655554444444332 334555667889999999988888889999999998888776554
Q ss_pred --hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 010290 432 --FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 465 (513)
Q Consensus 432 --~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~ 465 (513)
+....-+..++.+.+||.+.|+...++.+..+.-
T Consensus 510 f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 510 FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 2233346677889999999999999999987754
No 318
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.63 E-value=54 Score=31.93 Aligned_cols=111 Identities=10% Similarity=0.004 Sum_probs=69.6
Q ss_pred HHhhhHhhcCCCCHH---HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh--hhhHHHHHHHHHHhhhccchhHH
Q 010290 145 SCGLFHVAYPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVR 219 (513)
Q Consensus 145 ~~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr 219 (513)
|.+++-.+++....+ ....++..+.+.++-.+...-..+..-|..+.-.-.. +.....++.-+.+++.-++++.|
T Consensus 283 a~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~ 362 (791)
T KOG1222|consen 283 AVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLR 362 (791)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHH
Confidence 445555666666555 4567777788877766666666555555554432211 12233466777778888888999
Q ss_pred HHHHHHHHHhhccCC--hhhhhhhHHHHHHHhcCCCCH
Q 010290 220 LLAVEGCGALGKLLE--PQDCVAHILPVIVNFSQDKSW 255 (513)
Q Consensus 220 ~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~~~d~~~ 255 (513)
...+..+-++.--.+ +.-....++|.+..++.++..
T Consensus 363 ~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~ 400 (791)
T KOG1222|consen 363 KATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK 400 (791)
T ss_pred HHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc
Confidence 999888877664332 233334478888888776543
No 319
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=81.59 E-value=23 Score=27.51 Aligned_cols=72 Identities=8% Similarity=0.104 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHhhh-ccchhHHHHHHHHHHHhhccCCh-hhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 010290 199 LKSEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272 (513)
Q Consensus 199 ~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 272 (513)
+...++|.+.+.+. ....+.|.++...++.++...+= ++....++..+......... ...+..++..+.+.-
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 45667788777777 66678888888888887776542 22223333333333333222 234445566666543
No 320
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=81.57 E-value=43 Score=30.68 Aligned_cols=125 Identities=12% Similarity=0.085 Sum_probs=76.2
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhhhhhh---hhhhh---hhH-HHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHH-
Q 010290 363 FLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLS---QSL-LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD- 434 (513)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~l~~i~~~~~---~~~~~---~~l-~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~- 434 (513)
+..+.+-+...+-.-|+.++..+...-. .+.+. +.. ...-..++.++++-.|..+...++.+.-.-.+....
T Consensus 171 FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~ 250 (342)
T KOG1566|consen 171 FFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMT 250 (342)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHH
Confidence 3444445555555555555554432211 11111 122 333566788999999999999999887653333222
Q ss_pred -----HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhH--------hhhhHHHHHhhhcCc
Q 010290 435 -----DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--------MQHIVPQVALIKSSR 487 (513)
Q Consensus 435 -----~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~--------~~~i~~~L~~~~~~~ 487 (513)
..=+..++.++.|+..+++.+|...+.....+..+..- .++++..+..+-.|.
T Consensus 251 kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr~KLl~~l~~f~~d~ 316 (342)
T KOG1566|consen 251 KYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNRPKLLELLHDFHTDR 316 (342)
T ss_pred HHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCcHHHHHHHHHhCCCC
Confidence 12456788899999999999999999888776554311 245555555555443
No 321
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=80.74 E-value=44 Score=30.28 Aligned_cols=131 Identities=11% Similarity=0.143 Sum_probs=64.8
Q ss_pred hhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCC------CHHHHHHHHHHHHHHHHHhC--CCccccch
Q 010290 210 LTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDK------SWRVRYMVANQLYELCEAVG--PEPTRSDV 281 (513)
Q Consensus 210 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~------~~~vr~~~~~~l~~l~~~~~--~~~~~~~l 281 (513)
++...+...|.+|+.++.. +.-...++|.+...+++. +-.+-..++.....+...-. -+.+.+++
T Consensus 206 l~dEs~~~~r~aAl~sLr~-------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hql 278 (450)
T COG5095 206 LLDESDEQTRDAALESLRN-------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQL 278 (450)
T ss_pred HHHHHHHHHHHHHHHHhcc-------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHH
Confidence 3455567788888887753 222455666666655432 11111222222222221100 12344678
Q ss_pred HHHHHHhc------CCC----cHHHHHHHHHhHHHHHhhhChHH--HHHhhhhhhh-hhcC-CCcHHHHHHHHHHHHHhc
Q 010290 282 VPAYVRLL------RDN----EAEVRIAAAGKVTKICRILNPEL--AIQHILPCVK-ELSS-DSSQHVRSALATVIMGMA 347 (513)
Q Consensus 282 l~~l~~~l------~d~----~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~-~~~~-d~~~~vr~~~~~~l~~l~ 347 (513)
+|.++.++ .++ .-.+|.-|+..++-++..++... ..+.+...+. .++. ..-......++..+..+.
T Consensus 279 mPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ 358 (450)
T COG5095 279 MPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILS 358 (450)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhc
Confidence 88877665 222 23588888888888887765531 2222222222 2221 223345555666655554
No 322
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=80.51 E-value=51 Score=30.87 Aligned_cols=60 Identities=8% Similarity=0.060 Sum_probs=45.8
Q ss_pred cHHHHHHHHHhHHHHHhhhCh------HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCH
Q 010290 293 EAEVRIAAAGKVTKICRILNP------ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 352 (513)
Q Consensus 293 ~~~vr~~a~~~l~~~~~~~~~------~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~ 352 (513)
-|+.|..-.+.+..+.+.+.+ +.....++..+...+++++..+....+.++..+...+..
T Consensus 133 yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 133 YPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 489998888888888776422 223356677778888999999999999999888876655
No 323
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=80.32 E-value=25 Score=27.27 Aligned_cols=37 Identities=11% Similarity=0.048 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhh
Q 010290 159 ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE 195 (513)
Q Consensus 159 ~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 195 (513)
....++...+.+-++++++-|+..+++.|..++..-+
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~ 70 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN 70 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence 3466788889999999999998889998888887643
No 324
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=79.48 E-value=75 Score=32.24 Aligned_cols=154 Identities=12% Similarity=0.070 Sum_probs=93.3
Q ss_pred cHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhc--------CCCChHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHH
Q 010290 332 SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL--------KDEFPDVRLNIISKLDQVNQVIGIDL-LSQSLLPAI 402 (513)
Q Consensus 332 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l--------~d~~~~vr~~a~~~l~~i~~~~~~~~-~~~~l~~~l 402 (513)
+|.--...|+++|+++..++...-...++.++.++| +|....|-.......|..-..+...| +...++..+
T Consensus 496 sw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLkahw~FLkTVv~KL 575 (1053)
T COG5101 496 SWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKAHWSFLKTVVKKL 575 (1053)
T ss_pred chhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHHHHHHHHHHHHHH
Confidence 566777889999999877776543333333333332 34434444444444444333333222 446677777
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHHhChhhHH----------HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhH
Q 010290 403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----------DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 472 (513)
Q Consensus 403 ~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~----------~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~ 472 (513)
.++.......++..||..+-.+++.|...+.. ..++.-+-+--.|-.|.=.....++.|-+.+.....-.
T Consensus 576 FEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIse~p~~~~ 655 (1053)
T COG5101 576 FEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGMVISEVPKTRD 655 (1053)
T ss_pred HHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhHHHhccchhhH
Confidence 78877778889999999999999887655433 33344444444566676667777788877776655433
Q ss_pred hhhhHHHHHhhhc
Q 010290 473 MQHIVPQVALIKS 485 (513)
Q Consensus 473 ~~~i~~~L~~~~~ 485 (513)
.+..+-.+.++.+
T Consensus 656 ~~rlv~dlm~Lpn 668 (1053)
T COG5101 656 YKRLVLDLMDLPN 668 (1053)
T ss_pred HHHHHHHHHHhhH
Confidence 4555555555444
No 325
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=79.43 E-value=48 Score=29.93 Aligned_cols=137 Identities=14% Similarity=0.205 Sum_probs=72.9
Q ss_pred hHHHHHHhcCCCc-----HHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHH
Q 010290 281 VVPAYVRLLRDNE-----AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT 355 (513)
Q Consensus 281 ll~~l~~~l~d~~-----~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 355 (513)
.+|.+...+++++ +.++ .++..++.+++..+...+. ..+..+.+........-...++..+.+.+.++.
T Consensus 112 ~LP~ll~~~d~~~~i~~~~~~~-~~A~~La~~a~~~~~~~La----~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~- 185 (262)
T PF14225_consen 112 LLPRLLHAFDDPNPIQPDQECI-EIAEALAQVAEAQGLPNLA----RILSSYAKGRFRDKDDFLSQVVSYLREAFFPDH- 185 (262)
T ss_pred HHHHHHHHhcccccccccHHHH-HHHHHHHHHHHhCCCccHH----HHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchh-
Confidence 3455555555554 3444 4557788888655443332 222223222221111122223333444333222
Q ss_pred HHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 010290 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL-LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426 (513)
Q Consensus 356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~-~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~ 426 (513)
...++-.+..++.++-+.+|..++..|..+...++... ...+++..+.++++.+.|. .|++.+..+..
T Consensus 186 ~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~~---eAL~VLd~~v~ 254 (262)
T PF14225_consen 186 EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLWM---EALEVLDEIVT 254 (262)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccHH---HHHHHHHHHHh
Confidence 23456677888888888899999888888876654321 3345666667777777663 34555544443
No 326
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=79.36 E-value=26 Score=26.84 Aligned_cols=38 Identities=16% Similarity=0.016 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhh
Q 010290 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA 197 (513)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~ 197 (513)
...++...+.+-+++++|.+...+...|..+.+..|+.
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~ 71 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER 71 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH
Confidence 34567888888888899999999999999999888763
No 327
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=78.96 E-value=49 Score=34.60 Aligned_cols=151 Identities=16% Similarity=0.140 Sum_probs=93.4
Q ss_pred CcHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhhccCCchHHHHHHHHHhhcccccccCchhhhhhh
Q 010290 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLL 88 (513)
Q Consensus 9 ~~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~ 88 (513)
..|..++..|.|.|..+.-.+-..+-.....-.+.-....|+.++.+ .....+ ...|..+ .+.+...++
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~--t~s~~~----~~il~~~-----~~P~~K~~~ 72 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLS--TNSQRA----LEILVGV-----QEPHDKHLF 72 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhh--cCcHHH----HHHHHhc-----CCccHHHHH
Confidence 46888999999999877666654443332221111223344444433 222222 2222221 234456777
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHhhcChH--HHHh-hHH-HHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH---HH
Q 010290 89 PPLETLCTVEETCVRDKAVESLCRIGSQMREQ--DVVE-HFI-PLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA---LK 161 (513)
Q Consensus 89 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~--~~~~-~~~-~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~---~~ 161 (513)
..+...+... .-|..++..|+.++..-++. .+.. .++ .++..+..|.+..+-..|+.++..+...++.. +.
T Consensus 73 ~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L 150 (668)
T PF04388_consen 73 DKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHL 150 (668)
T ss_pred HHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHH
Confidence 7777766654 46888999999998875552 2222 244 44556667888888888988888888877665 77
Q ss_pred HHHHHHHHHHc
Q 010290 162 TELRTIYRQLC 172 (513)
Q Consensus 162 ~~l~~~l~~l~ 172 (513)
.+++..|..++
T Consensus 151 ~~Lf~If~Rl~ 161 (668)
T PF04388_consen 151 PDLFNIFGRLL 161 (668)
T ss_pred HHHHHHHHHHH
Confidence 78888888776
No 328
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=78.96 E-value=23 Score=33.26 Aligned_cols=87 Identities=9% Similarity=0.119 Sum_probs=61.8
Q ss_pred HhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHH-----HHHHHHHHHHcC-CCchHHHHHHHHhHHHHHHHhhh
Q 010290 123 VEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALK-----TELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEA 196 (513)
Q Consensus 123 ~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~-----~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~ 196 (513)
....+..|.+-.+..++.+-..|..++..++.+|+.-.+ .++...+..++. ...+.|+......+..++..+..
T Consensus 43 ~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 43 GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc
Confidence 344667777777888899999999999999999988733 345667777777 44688888888888888776655
Q ss_pred hhhHHHHHHHHHH
Q 010290 197 AHLKSEIMSIFEE 209 (513)
Q Consensus 197 ~~~~~~l~~~l~~ 209 (513)
+.-.+.+-.++.+
T Consensus 123 Dp~lsLi~~l~~k 135 (462)
T KOG2199|consen 123 DPSLSLISALYKK 135 (462)
T ss_pred CcchhHHHHHHHH
Confidence 4444444443333
No 329
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=78.70 E-value=3.9 Score=24.07 Aligned_cols=28 Identities=18% Similarity=0.094 Sum_probs=21.5
Q ss_pred HHHHHHHHcCCCchHHHHHHHHhHHHHH
Q 010290 164 LRTIYRQLCQDDMPMVRRSAATNLGKFA 191 (513)
Q Consensus 164 l~~~l~~l~~d~~~~vr~~a~~~l~~l~ 191 (513)
.++.+.++++++++.+++.++.+|..++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4667777777778888888888887764
No 330
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=78.14 E-value=34 Score=27.47 Aligned_cols=74 Identities=8% Similarity=-0.022 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcC-CCchHHHHHHHHhHHHHHHHhhhhh----hHHHHHHH-HHHhhhc---cchhHHHHHHHHHHHhhcc
Q 010290 162 TELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSI-FEELTQD---DQDSVRLLAVEGCGALGKL 232 (513)
Q Consensus 162 ~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~-l~~l~~d---~~~~vr~~a~~~l~~l~~~ 232 (513)
.+.+..+.+-++ ++++.|...+...+..+++.+|... ....++.- +.+++.+ ....|+...+..+..++..
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 455666666565 4688888888888888888888632 22345554 5556543 2346777777777777665
Q ss_pred CCh
Q 010290 233 LEP 235 (513)
Q Consensus 233 ~~~ 235 (513)
+..
T Consensus 117 f~~ 119 (141)
T cd03565 117 FRG 119 (141)
T ss_pred hCC
Confidence 543
No 331
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=78.06 E-value=51 Score=29.46 Aligned_cols=87 Identities=14% Similarity=0.164 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhhcCh------HHHHhhHHHHHHHhhcCC-CcchhhhHHhhhHhhcCCCCHHH-----HHHHHHHHHHHc
Q 010290 105 KAVESLCRIGSQMRE------QDVVEHFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPEAL-----KTELRTIYRQLC 172 (513)
Q Consensus 105 ~a~~~l~~l~~~~~~------~~~~~~~~~~l~~l~~d~-~~~~R~~~~~~l~~~~~~~~~~~-----~~~l~~~l~~l~ 172 (513)
.|+..+..++.+-.. ..+.-++.|++..-.+.. ....|.++...++.+++.-+.+. ..+++|..+..+
T Consensus 69 naLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m 148 (262)
T PF04078_consen 69 NALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM 148 (262)
T ss_dssp HHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH
Confidence 455566666665332 233456788887655543 36789999999999998776662 345677777777
Q ss_pred CCCchHHHHHHHHhHHHHH
Q 010290 173 QDDMPMVRRSAATNLGKFA 191 (513)
Q Consensus 173 ~d~~~~vr~~a~~~l~~l~ 191 (513)
+..+..-|..|.-.+..+.
T Consensus 149 e~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 149 EFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHS-HHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHH
Confidence 6666555555555555443
No 332
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=77.97 E-value=46 Score=28.87 Aligned_cols=157 Identities=13% Similarity=0.055 Sum_probs=74.2
Q ss_pred cCCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcC
Q 010290 57 NDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAG 136 (513)
Q Consensus 57 ~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d 136 (513)
+-..|..|..+-..+...... ..+.+..+...+..++..+.|..|+..+.......+.+. ++.+..+..+
T Consensus 22 Gv~~P~~R~lak~~~~~~~~~-----~~~~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~-----~~~~~~~l~~ 91 (208)
T cd07064 22 GIKTPERRALSKPFLKESKLP-----DKEELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPED-----LPLLEELITT 91 (208)
T ss_pred CCChHHHHHHHHHHHHHcCCC-----cHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHHH-----HHHHHHHHcC
Confidence 345566666655554432220 122344455556666666777777777666555554432 2333333222
Q ss_pred -CCcch-hhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhcc
Q 010290 137 -EWFTA-RVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD 214 (513)
Q Consensus 137 -~~~~~-R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~ 214 (513)
++|.. =..+..+++.+... .+.+.+.+.....|++.-.|+.++-+.-.+.+. .-...+..++...+.|+
T Consensus 92 ~~~Wd~vD~~~~~i~g~~~~~-----~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~----~~~~~l~~~~~~~~~d~ 162 (208)
T cd07064 92 KSWWDTVDSLAKVVGGILLAD-----YPEFEPVMDEWSTDENFWLRRTAILHQLKYKEK----TDTDLLFEIILANLGSK 162 (208)
T ss_pred CchHHHHHHHHHHHhHHHHhC-----ChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc----cCHHHHHHHHHHhCCCh
Confidence 12211 11222222222211 122244555556666655555554433222222 11234455555566666
Q ss_pred chhHHHHHHHHHHHhhcc
Q 010290 215 QDSVRLLAVEGCGALGKL 232 (513)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~ 232 (513)
+.-|+++.--+|..+++.
T Consensus 163 e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 163 EFFIRKAIGWALREYSKT 180 (208)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 666666666666666654
No 333
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=77.82 E-value=3 Score=22.25 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhhh
Q 010290 374 VRLNIISKLDQVNQ 387 (513)
Q Consensus 374 vr~~a~~~l~~i~~ 387 (513)
||..++.+|+.+..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 56666666666544
No 334
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=77.52 E-value=1.4e+02 Score=34.10 Aligned_cols=137 Identities=12% Similarity=0.121 Sum_probs=79.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCcc----ccchHHHHHHhcCCC----cHHHHHHHHHhHHHHHhhhC-hHHH-----H
Q 010290 252 DKSWRVRYMVANQLYELCEAVGPEPT----RSDVVPAYVRLLRDN----EAEVRIAAAGKVTKICRILN-PELA-----I 317 (513)
Q Consensus 252 d~~~~vr~~~~~~l~~l~~~~~~~~~----~~~ll~~l~~~l~d~----~~~vr~~a~~~l~~~~~~~~-~~~~-----~ 317 (513)
......-++++.+|.+++.++..... .+--+.++...|.-. .-.+.+.|-.-|..+...+. .+.+ .
T Consensus 449 ~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~ 528 (2195)
T KOG2122|consen 449 NKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR 528 (2195)
T ss_pred hcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH
Confidence 33333455667777777766554321 234566666666433 12233333222222222221 1111 2
Q ss_pred HhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHH---HHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhh
Q 010290 318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (513)
Q Consensus 318 ~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~ 388 (513)
..++..|++.++..+..+-..+|.+|..+......+. +....++++.+++..++..+-..++.+|.++...
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 3445666677777777787888888888775544332 2245678899999999888888888888877543
No 335
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=77.10 E-value=51 Score=29.04 Aligned_cols=87 Identities=15% Similarity=0.193 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhhcCh------HHHHhhHHHHHHHhhcC-CCcchhhhHHhhhHhhcCCCCHH-----HHHHHHHHHHHHc
Q 010290 105 KAVESLCRIGSQMRE------QDVVEHFIPLVKRLAAG-EWFTARVSSCGLFHVAYPSAPEA-----LKTELRTIYRQLC 172 (513)
Q Consensus 105 ~a~~~l~~l~~~~~~------~~~~~~~~~~l~~l~~d-~~~~~R~~~~~~l~~~~~~~~~~-----~~~~l~~~l~~l~ 172 (513)
.|+..+..++.+-+. ..+.-++.|++..-.++ +....|.++...++.+.++-+.+ ...+++|..+.-+
T Consensus 98 naL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrim 177 (293)
T KOG3036|consen 98 NALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIM 177 (293)
T ss_pred HHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH
Confidence 455555666655332 22334567777765554 44778999999999999998887 4567888888888
Q ss_pred CCCchHHHHHHHHhHHHHH
Q 010290 173 QDDMPMVRRSAATNLGKFA 191 (513)
Q Consensus 173 ~d~~~~vr~~a~~~l~~l~ 191 (513)
+..+..-+..+...+..+.
T Consensus 178 e~GSelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 178 ESGSELSKTVATFILQKIL 196 (293)
T ss_pred hcccHHHHHHHHHHHHHHh
Confidence 8777766666665555543
No 336
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=76.97 E-value=40 Score=27.94 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhH--hhhhHHHHHh-hhcCc--chHHH-HHHHHHHHhcccc
Q 010290 435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVAL-IKSSR--NLVLN-SVLSLLKNAGIDA 505 (513)
Q Consensus 435 ~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~--~~~i~~~L~~-~~~~~--~~~~r-~~~~~~~~i~~~~ 505 (513)
.++.|.+++.+..+++.+=..+++.+..+...++.... .+.+++.+.. +++.+ .+.+| .+++++..++.+.
T Consensus 72 ~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p 148 (168)
T PF12783_consen 72 DDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDP 148 (168)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhCh
Confidence 45778888877666788888999999999988876533 3566666665 55443 35566 6788888888654
No 337
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=76.85 E-value=24 Score=25.17 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCch--hHHHHHHHHHHHHHHHHhC-hhhHhhhhHHHHHhhhcCcc
Q 010290 436 KLGALCMQWLKDKV--YSIRDAAANNVKRLAEEFG-PDWAMQHIVPQVALIKSSRN 488 (513)
Q Consensus 436 ~~~~~l~~~l~d~~--~~VR~~a~~~l~~l~~~~~-~~~~~~~i~~~L~~~~~~~~ 488 (513)
+++..+.+..+|.. .+||.+|-++...+...-. +..-....+..|.+..+|||
T Consensus 17 q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPN 72 (93)
T COG1698 17 QVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPN 72 (93)
T ss_pred HHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCC
Confidence 46777777778765 3899999999988876322 22224778899999999986
No 338
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=76.50 E-value=7.9 Score=26.81 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHH-hChhhHHH-HHHHHHHHHh-cCchhHHHHHHHHHHHHHHHH
Q 010290 415 LAIIEYIPLLASQ-LGVGFFDD-KLGALCMQWL-KDKVYSIRDAAANNVKRLAEE 466 (513)
Q Consensus 415 ~~~~~~l~~l~~~-~~~~~~~~-~~~~~l~~~l-~d~~~~VR~~a~~~l~~l~~~ 466 (513)
++++.+++.++.. .|-..+.+ .+++.+.++. +.++..||-.+..+++-+.+.
T Consensus 5 KaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 5 KAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 4566666666543 33333332 3556666644 356666666666666666554
No 339
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=75.60 E-value=24 Score=28.30 Aligned_cols=50 Identities=20% Similarity=0.155 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhcc
Q 010290 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD 214 (513)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~ 214 (513)
..+++.+.+..++.++++.|++.|.+|+..+-.. . ....-+.+..+++|.
T Consensus 14 ~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~----~-l~pY~d~L~~Lldd~ 63 (141)
T PF07539_consen 14 RSDELYDALLRLLSSRDPEVQKLALDCLLTWKDP----Y-LTPYKDNLENLLDDK 63 (141)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH----H-HHhHHHHHHHHcCcc
Confidence 3467888889999999999999999998876431 1 112234455566654
No 340
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=74.72 E-value=1.1e+02 Score=31.60 Aligned_cols=147 Identities=22% Similarity=0.215 Sum_probs=82.7
Q ss_pred hhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCc---hhhh--------hhhHHHHHhh--ccchhHHHHHHHHHH
Q 010290 45 TRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGL---EYAN--------VLLPPLETLC--TVEETCVRDKAVESL 110 (513)
Q Consensus 45 ~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~---~~~~--------~l~~~l~~l~--~~~~~~vR~~a~~~l 110 (513)
+.+-++.++.+ ..+.+..+|..++.-+.++.+.++-. .+.+ ..++.++.-+ .+.++.+...++.-+
T Consensus 243 ~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~ 322 (993)
T COG5234 243 YLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFF 322 (993)
T ss_pred HHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHH
Confidence 44556777777 77888899999999888888766532 1221 1122232211 234555666655554
Q ss_pred HHHHhhcChHHHHhhHHHHHHHhhc--------CCCcchhhhHHhhhHhhcCC----CCHHHHHHHHHHHHH-HcCCCch
Q 010290 111 CRIGSQMREQDVVEHFIPLVKRLAA--------GEWFTARVSSCGLFHVAYPS----APEALKTELRTIYRQ-LCQDDMP 177 (513)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~l~~l~~--------d~~~~~R~~~~~~l~~~~~~----~~~~~~~~l~~~l~~-l~~d~~~ 177 (513)
+ +++..+-+-....+.|.+..-++ .+--.+|.+++..+=.++.. ..+.....+.-.+.+ .+-||+-
T Consensus 323 a-la~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel 401 (993)
T COG5234 323 A-LAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPEL 401 (993)
T ss_pred H-HhhccccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchh
Confidence 4 44443333222234555543221 11235666666655444433 223334445555555 6779999
Q ss_pred HHHHHHHHhHHHHHH
Q 010290 178 MVRRSAATNLGKFAA 192 (513)
Q Consensus 178 ~vr~~a~~~l~~l~~ 192 (513)
.+|+++..++-++.-
T Consensus 402 ~vRr~a~Aal~E~iG 416 (993)
T COG5234 402 NVRRAATAALFEVIG 416 (993)
T ss_pred hhhhHHHHHHHHHhc
Confidence 999999888766543
No 341
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=73.98 E-value=1.4e+02 Score=32.63 Aligned_cols=89 Identities=20% Similarity=0.278 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHh----hhh-hhhhhhhhhHH---HHHHH
Q 010290 333 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV----NQV-IGIDLLSQSLL---PAIVE 404 (513)
Q Consensus 333 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i----~~~-~~~~~~~~~l~---~~l~~ 404 (513)
..+|.++..+...+....+.......+++++ -.|+++.+|......+..- ... .+.......+. +.+.+
T Consensus 882 vd~r~~a~~~~v~~~~~~~~~~~l~~~leil---~~~~dp~~R~~i~~ml~~~~np~~~~~~~s~~~~~~~~~~~~~~~~ 958 (1180)
T KOG1932|consen 882 VDVRICAEELNVDLGGVDGSPDDLAYILEIL---ENDPDPVIRHKILDMLSQSNNPVTKGGTESDLLKEALVERLWKLKN 958 (1180)
T ss_pred hhhHHHhhhhhhhhcccCCChHHHHHHhhhc---ccCcchHHHHHHHHHhhccCCceeeccccCccccHHHHHhhhhhhc
Confidence 4688888888777766544333223333322 2677888999888877762 111 12222222333 33334
Q ss_pred hhcCCChhHHHHHHHHHHHH
Q 010290 405 LAEDRHWRVRLAIIEYIPLL 424 (513)
Q Consensus 405 l~~~~~~~vR~~~~~~l~~l 424 (513)
..+..++..|..+..+.-.+
T Consensus 959 ~~k~~D~~~r~~v~d~~~~L 978 (1180)
T KOG1932|consen 959 LSKEPDICSRSSVLDVYIAL 978 (1180)
T ss_pred cCCCCCeEeEeehhhhhhhe
Confidence 43456777777666655444
No 342
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.40 E-value=58 Score=32.12 Aligned_cols=99 Identities=12% Similarity=0.168 Sum_probs=71.7
Q ss_pred HhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHH----HHHHHH
Q 010290 365 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGAL 440 (513)
Q Consensus 365 ~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~----~~~~~~ 440 (513)
..+.++++..-...|..+..-- + -...++..|.+.+++.+..+..-|+..|..+++.||..+.. +.|++-
T Consensus 12 ~~l~~pDWa~NleIcD~IN~~~---~---~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~e 85 (470)
T KOG1087|consen 12 ESLAEPDWALNLEICDLINSTE---G---GPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNE 85 (470)
T ss_pred ccccCccHHHHHHHHHHHhcCc---c---CcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3556667766555555443211 1 12466777777788877788888899999999999987643 457777
Q ss_pred HHHHhcC--chhHHHHHHHHHHHHHHHHhCh
Q 010290 441 CMQWLKD--KVYSIRDAAANNVKRLAEEFGP 469 (513)
Q Consensus 441 l~~~l~d--~~~~VR~~a~~~l~~l~~~~~~ 469 (513)
+++.... ....||..++..|..+...+++
T Consensus 86 mVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 86 MVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 7776654 5779999999999999999987
No 343
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=72.30 E-value=86 Score=29.68 Aligned_cols=97 Identities=13% Similarity=0.105 Sum_probs=62.6
Q ss_pred CCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhh----hhhHHHHHHH
Q 010290 329 SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIVE 404 (513)
Q Consensus 329 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~----~~~l~~~l~~ 404 (513)
...+|.+-..+|..++.=. .. ....+..+.+.++..++.|...|+..++.+...+|.... ...+...+..
T Consensus 22 T~enW~~IlDvCD~v~~~~-~~-----~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~a 95 (462)
T KOG2199|consen 22 TSENWSLILDVCDKVGSDP-DG-----GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRA 95 (462)
T ss_pred ccccHHHHHHHHHhhcCCC-cc-----cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHH
Confidence 4557777666666654433 11 234567778888888888888888888888877775432 3355556666
Q ss_pred hhc-CCChhHHHHHHHHHHHHHHHhChh
Q 010290 405 LAE-DRHWRVRLAIIEYIPLLASQLGVG 431 (513)
Q Consensus 405 l~~-~~~~~vR~~~~~~l~~l~~~~~~~ 431 (513)
++. .....|+...-..+..++..+..+
T Consensus 96 l~~~~~h~kV~~k~~~lv~eWsee~K~D 123 (462)
T KOG2199|consen 96 LIESKAHPKVCEKMRDLVKEWSEEFKKD 123 (462)
T ss_pred HHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence 666 445667766666666666655444
No 344
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=72.10 E-value=1.2e+02 Score=30.96 Aligned_cols=35 Identities=29% Similarity=0.167 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC
Q 010290 434 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 468 (513)
Q Consensus 434 ~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~ 468 (513)
...++..+.+..-+.+++||..|.++|..++...+
T Consensus 469 ~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p 503 (552)
T PF14222_consen 469 FKSLIELLCRGTVHVDPNIRESAAQALKRLARDKP 503 (552)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCC
Confidence 45689999999999999999999999999999873
No 345
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=71.99 E-value=41 Score=25.47 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=38.9
Q ss_pred ChhHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh
Q 010290 410 HWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 470 (513)
Q Consensus 410 ~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 470 (513)
....|..++.+++.+.+..|.. .+..+++-.+...+. .++.|..+++++..+...++++
T Consensus 28 ~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~ 88 (107)
T smart00802 28 PYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEE 88 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHH
Confidence 3455777888888887765542 233445555555555 3458888888888888887764
No 346
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=71.83 E-value=17 Score=31.31 Aligned_cols=74 Identities=8% Similarity=-0.032 Sum_probs=35.5
Q ss_pred hhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCH
Q 010290 82 EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE 158 (513)
Q Consensus 82 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~ 158 (513)
++++.+++.+.....+.+.-.|..++-..... ..++.....+++.+..+..|+.+.++.+..-+|..++.+.++
T Consensus 114 ~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~---~k~~~~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k~~~e 187 (222)
T COG4912 114 PLWPDLIEEWAADAEEDNRWERRAAIVHQLVY---KKKTLDLLEIFEIIELLLGDKEFFVQKAIGWALRQIGKHSNE 187 (222)
T ss_pred ccCHHHHHHHHhccccchHHHHHHHHHHHHHH---hcCccchhHHHHHHHHHccChHHHHHHHHHHHHHHHHhhchH
Confidence 34455555553333344444444433222222 222222234566666666666666666666666666664333
No 347
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=71.33 E-value=73 Score=28.15 Aligned_cols=69 Identities=14% Similarity=0.146 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhhc-cchhHHHHHHHHHHHhhccCChhh----hhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 010290 201 SEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEPQD----CVAHILPVIVNFSQDKSWRVRYMVANQLYELC 269 (513)
Q Consensus 201 ~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~ 269 (513)
-++.|++.....+ +.+..|..++..++++.+.=.++. ...+++|...+..+..+...+..+...++.|.
T Consensus 123 lylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 123 LYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKIL 196 (293)
T ss_pred hhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 3566766655444 456788888888888887644431 12457888888887777766666666666664
No 348
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=70.52 E-value=1.3e+02 Score=30.54 Aligned_cols=135 Identities=18% Similarity=0.160 Sum_probs=84.3
Q ss_pred HHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHH----HHh
Q 010290 283 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT----IEQ 358 (513)
Q Consensus 283 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~----~~~ 358 (513)
..+.....|-++.+|..+..+++..+..++.--+.-..+.+.-..+.|.+..||..+...+..++..-+.... .+.
T Consensus 278 svfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eR 357 (740)
T COG5537 278 SVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVER 357 (740)
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 3455567888999999999999999887654333333455556778899999999999999988866544332 233
Q ss_pred HHHHHHHhc-CCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHH
Q 010290 359 LLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 421 (513)
Q Consensus 359 l~~~l~~~l-~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l 421 (513)
+...++..+ .|.+. ||..++..+..+... |. +...-+..+..++-|..++-|....+.+
T Consensus 358 Fk~rILE~~r~D~d~-VRi~sik~l~~lr~l-g~--L~~SeIlIvsscmlDi~pd~r~~~~E~v 417 (740)
T COG5537 358 FKDRILEFLRTDSDC-VRICSIKSLCYLRIL-GV--LSSSEILIVSSCMLDIIPDSRENIVESV 417 (740)
T ss_pred HHHHHHHHHhhccch-hhHHHHHHHHHHHHh-cc--cchhHHHHHHHHHhcCCCcchHHHHHHH
Confidence 444444444 45555 999999888876442 11 1122333344445555544333333333
No 349
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=68.58 E-value=54 Score=25.50 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHh-----hhhHHHHHhhhc
Q 010290 436 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM-----QHIVPQVALIKS 485 (513)
Q Consensus 436 ~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~-----~~i~~~L~~~~~ 485 (513)
.++.++.+-|+|+.+.|+..+++.|..++..-++++.. ..++..+..+-.
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g 92 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKG 92 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCC
Confidence 58999999999999999999999999999986655432 345555555443
No 350
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=67.84 E-value=15 Score=26.53 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=19.8
Q ss_pred hhhhHHHHHh-hccchhHHHHHHHHHHHHHHhhcC
Q 010290 85 NVLLPPLETL-CTVEETCVRDKAVESLCRIGSQMR 118 (513)
Q Consensus 85 ~~l~~~l~~l-~~~~~~~vR~~a~~~l~~l~~~~~ 118 (513)
..++..++.+ .+..+.+||...++|+..+...-.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~ 50 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRG 50 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH
Confidence 3444444444 445566777777777776666543
No 351
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=67.18 E-value=51 Score=28.48 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 010290 199 LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (513)
Q Consensus 199 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 270 (513)
..+.+++.+....++.+...|..++-.... +..+......+++.+...+.|....|+.+...+|..++.
T Consensus 115 ~~~~li~~~~a~~~~~~~w~rraaiv~~l~---~~k~~~~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k 183 (222)
T COG4912 115 LWPDLIEEWAADAEEDNRWERRAAIVHQLV---YKKKTLDLLEIFEIIELLLGDKEFFVQKAIGWALRQIGK 183 (222)
T ss_pred cCHHHHHHHHhccccchHHHHHHHHHHHHH---HhcCccchhHHHHHHHHHccChHHHHHHHHHHHHHHHHh
Confidence 345566665333333334444444433322 222333334577888888888888888888888888775
No 352
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=66.94 E-value=39 Score=27.12 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=27.0
Q ss_pred hhhhhhHHHHHhhccchhHHHHHHHHHHHHHHh
Q 010290 83 YANVLLPPLETLCTVEETCVRDKAVESLCRIGS 115 (513)
Q Consensus 83 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~ 115 (513)
..+.+...+..++.+++..|+..|++|+...-.
T Consensus 14 ~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~ 46 (141)
T PF07539_consen 14 RSDELYDALLRLLSSRDPEVQKLALDCLLTWKD 46 (141)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 356677788889999999999999999887643
No 353
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=66.92 E-value=24 Score=24.43 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhhh-hhhhhhh-hhHHHHHHHhhc-CCChhHHHHHHHHHHHHHHH
Q 010290 375 RLNIISKLDQVNQV-IGIDLLS-QSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQ 427 (513)
Q Consensus 375 r~~a~~~l~~i~~~-~~~~~~~-~~l~~~l~~l~~-~~~~~vR~~~~~~l~~l~~~ 427 (513)
.++++.+++.++.. .|.+.+. ..+++.+.++.+ ++.+.+|-.+..+++.++..
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 46788888888764 4555443 368888888776 67899999999999988865
No 354
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=66.80 E-value=64 Score=27.55 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=17.2
Q ss_pred HhhhhhhhhhcCCCcHHHHHHHHHHHHHhc
Q 010290 318 QHILPCVKELSSDSSQHVRSALATVIMGMA 347 (513)
Q Consensus 318 ~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~ 347 (513)
..++..+.+...++=.+||..|..++..+.
T Consensus 6 ~~~~~~llrqa~EKiDrvR~~A~~~l~~ll 35 (193)
T PF12612_consen 6 QQIIGGLLRQAAEKIDRVREVAGKCLQRLL 35 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555666666666665555
No 355
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=65.90 E-value=2.1e+02 Score=31.42 Aligned_cols=367 Identities=13% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHhhcccccccCchhhhhhhHHH-HHhhccchhHHHHHHHHHHHHHHhhcCh--HHHHhhHHHHHHHhhcCCCcch
Q 010290 65 LAMAEELGVFIPYVGGLEYANVLLPPL-ETLCTVEETCVRDKAVESLCRIGSQMRE--QDVVEHFIPLVKRLAAGEWFTA 141 (513)
Q Consensus 65 ~~~~~~l~~~~~~~~~~~~~~~l~~~l-~~l~~~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~l~~d~~~~~ 141 (513)
+.....-..++..+|++...-..++++ ..+....++.+...+++++..+-..-+= +......+..+.++..+. +..
T Consensus 1750 ~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS~-PS~ 1828 (2235)
T KOG1789|consen 1750 ANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHSQ-PSM 1828 (2235)
T ss_pred HHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhcC-hHH
Q ss_pred hhhHHhhhHhhcCCCCHH----HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHH--HHhhh---hhhHHHHHHHHHHhhh
Q 010290 142 RVSSCGLFHVAYPSAPEA----LKTELRTIYRQLCQDDMPMVRRSAATNLGKFA--ATVEA---AHLKSEIMSIFEELTQ 212 (513)
Q Consensus 142 R~~~~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~--~~~~~---~~~~~~l~~~l~~l~~ 212 (513)
|..+...+.++...-.-. ....+...+.-+|...++.+|.++++.++++. +..|+ -.....+-..+...+.
T Consensus 1829 R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~R 1908 (2235)
T KOG1789|consen 1829 RARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLR 1908 (2235)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHh
Q ss_pred cc-------------------chhHHHHHHHHHHHhhccCChhhhhhhHHHH----------------------HHHhcC
Q 010290 213 DD-------------------QDSVRLLAVEGCGALGKLLEPQDCVAHILPV----------------------IVNFSQ 251 (513)
Q Consensus 213 d~-------------------~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~----------------------l~~~~~ 251 (513)
|. ++..|...-..+..+....-.++-....+.- +..++.
T Consensus 1909 D~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~ 1988 (2235)
T KOG1789|consen 1909 DSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVV 1988 (2235)
T ss_pred cCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhh
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCc-----HHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhh
Q 010290 252 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE-----AEVRIAAAGKVTKICRILNPELAIQHILPCVKE 326 (513)
Q Consensus 252 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~-----~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~ 326 (513)
++.|..| ....+...++..++.++.-++ .+.-..|...|-+.-..+....-.-..+|.+..
T Consensus 1989 ~P~f~LR--------------~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~ 2054 (2235)
T KOG1789|consen 1989 GPGFNLR--------------HPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCT 2054 (2235)
T ss_pred CCCCccc--------------CHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHH
Q ss_pred hcCCCcHHHHHHHHHHHHHh------chhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhh----
Q 010290 327 LSSDSSQHVRSALATVIMGM------APILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ---- 396 (513)
Q Consensus 327 ~~~d~~~~vr~~~~~~l~~l------~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~---- 396 (513)
.+...+...-.++++.++.+ ++.+..-...+.++|.+.+ .+..---|++++.++...-..+.+.+
T Consensus 2055 Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK-----~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~ 2129 (2235)
T KOG1789|consen 2055 AMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKK-----QPSLMGLAAEALKRLMKRNTGELVAQMLKC 2129 (2235)
T ss_pred HHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHh-----cchHHHHHHHHHHHHHHHhHHHHHHHHhcc
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhH
Q 010290 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYS 451 (513)
Q Consensus 397 ~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~ 451 (513)
.++|.+..++....-.-...-...=+.+.+.+.......++-.-+-+.+.-...+
T Consensus 2130 gLvpyLL~LLd~~tL~~~~~~aas~A~Iv~aLk~~~~~l~vg~kV~EILd~S~VW 2184 (2235)
T KOG1789|consen 2130 GLVPYLLQLLDSSTLNGVSNGAAARAEIVDALKSAILDLKVGQKVAEILDKSPVW 2184 (2235)
T ss_pred CcHHHHHHHhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
No 356
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=65.07 E-value=1.3e+02 Score=28.84 Aligned_cols=67 Identities=7% Similarity=0.024 Sum_probs=39.4
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHhhcC---hHHHHhhHHHHHHHhhcC-CCcchhhhHHhhhHhhcCC
Q 010290 89 PPLETLCTVEETCVRDKAVESLCRIGSQMR---EQDVVEHFIPLVKRLAAG-EWFTARVSSCGLFHVAYPS 155 (513)
Q Consensus 89 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~l~~d-~~~~~R~~~~~~l~~~~~~ 155 (513)
+.+..++.+.+..+-+.+...+..++..-+ ......+....+...+++ .+...+..+++++..+...
T Consensus 117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~ 187 (442)
T KOG2759|consen 117 LSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV 187 (442)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC
Confidence 344455667777777766666666654322 122234455566555444 6677778888888766543
No 357
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.35 E-value=89 Score=26.90 Aligned_cols=108 Identities=16% Similarity=0.136 Sum_probs=71.7
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhh--HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC---hh
Q 010290 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PD 470 (513)
Q Consensus 396 ~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~---~~ 470 (513)
...+|.+.+-+.+.+...|..|-+-+..+....|+.. ..++++..+...+...+.+|...++++|.++....| ..
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~a 192 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAA 192 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchh
Confidence 3567777777777777777777777777766655442 335677788888889999999999999988876544 32
Q ss_pred h--HhhhhHHHHHhhhcCc-------ch--------HHHHHHHHHHHhcc
Q 010290 471 W--AMQHIVPQVALIKSSR-------NL--------VLNSVLSLLKNAGI 503 (513)
Q Consensus 471 ~--~~~~i~~~L~~~~~~~-------~~--------~~r~~~~~~~~i~~ 503 (513)
- ++..++|.+.-+.+.+ +| +...+++.++.-|.
T Consensus 193 LVPfYRQlLp~~n~~k~~n~n~gd~idydk~~~igdlI~dTL~~LE~~GG 242 (262)
T KOG3961|consen 193 LVPFYRQLLPVLNTFKNSNVNRGDGIDYDKNRNIGDLINDTLKHLERSGG 242 (262)
T ss_pred hhhHHHHhhhhhhhhcccccccccccCccccccHHHHHHHHHHHHHHcCC
Confidence 2 1356677665554442 23 33355677766663
No 358
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=62.91 E-value=1.7e+02 Score=29.28 Aligned_cols=217 Identities=14% Similarity=0.136 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccch--hHHHHHHHHHHHhhccCChhh
Q 010290 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQD--SVRLLAVEGCGALGKLLEPQD 237 (513)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~--~vr~~a~~~l~~l~~~~~~~~ 237 (513)
..+..+-.+.+.++.++...+.++.-.++....-...+.+...+.| +..+.+- ++-..|.-+++.+.-.....+
T Consensus 447 E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~eevl~lL~P----i~~std~pie~~~~asltLg~vFvGtcngD 522 (881)
T COG5110 447 ERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAEEVLELLQP----IMFSTDSPIEVVFFASLTLGSVFVGTCNGD 522 (881)
T ss_pred ccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHHHHHHHhhh----hhcCCCCcHHHHHHHHHhhhheEeeccCch
Confidence 3455677777888888888888887777766554444555555555 4444443 455555555555443333334
Q ss_pred hhhhHHHHHHHhcC---CCCHHHHHHHH-----------------HHHHHHHHHhCCC--------c---ccc-chHHHH
Q 010290 238 CVAHILPVIVNFSQ---DKSWRVRYMVA-----------------NQLYELCEAVGPE--------P---TRS-DVVPAY 285 (513)
Q Consensus 238 ~~~~l~~~l~~~~~---d~~~~vr~~~~-----------------~~l~~l~~~~~~~--------~---~~~-~ll~~l 285 (513)
..+.++..+.+.-. ...| +|-.++ +.+..|-..+... . ..+ -.++.+
T Consensus 523 ~ts~ilqtf~Er~~~e~~tqw-~RFlaLgLa~Lf~g~~d~~d~v~eti~aIeg~ls~~~eiLv~~c~Y~GTGdvl~Iq~l 601 (881)
T COG5110 523 LTSLILQTFVERGKIESETQW-FRFLALGLASLFYGRKDQVDDVEETIMAIEGALSKHEEILVKGCQYVGTGDVLVIQSL 601 (881)
T ss_pred HHHHHHHHHHHhhhhhhhhHH-HHHHHHHHHHHHccccchhHHHHHHHHHhcchhhhhHHHHHhhceecccCcHHHHHHH
Confidence 44444444443221 2233 222211 1111111000000 0 000 122222
Q ss_pred HHhcC----CC----cHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHH
Q 010290 286 VRLLR----DN----EAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE 357 (513)
Q Consensus 286 ~~~l~----d~----~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 357 (513)
+.... |. +..+.. ...|+.-.-.+|.+.-.+-++..+...+.-.++.+|...--+.+-+...-+ .-
T Consensus 602 Lhv~~e~~~D~~k~~ea~ie~--~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnP----Qm 675 (881)
T COG5110 602 LHVKDEFTGDTLKNEEALIES--LALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNP----QM 675 (881)
T ss_pred HhccCCCCcccchhhHHHHHH--HHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCc----ch
Confidence 22111 11 222222 222333222334444445555666666667789999998888877764322 12
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q 010290 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (513)
Q Consensus 358 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~ 387 (513)
.++..+.+...|.+-+|-.+++-++|-+..
T Consensus 676 ~vfDtL~r~shd~dl~v~~ntIfamGLiGA 705 (881)
T COG5110 676 NVFDTLERSSHDGDLNVIINTIFAMGLIGA 705 (881)
T ss_pred HHHHHHHHhccccchhHHHHHHHHhhcccc
Confidence 467888899999999999999988887654
No 359
>COG2733 Predicted membrane protein [Function unknown]
Probab=62.82 E-value=1.4e+02 Score=28.36 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=20.7
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q 010290 400 PAIVELAEDRHWRVRLAIIEYIPLLASQL 428 (513)
Q Consensus 400 ~~l~~l~~~~~~~vR~~~~~~l~~l~~~~ 428 (513)
..+..-.++++..+|.....++..+.+.+
T Consensus 304 ~~l~~D~e~~~s~l~~~l~~~~~~~Ge~l 332 (415)
T COG2733 304 EWLKEDYESEDSMLRKRLARAVQSVGEEL 332 (415)
T ss_pred HHHHhcccCchhHHHHHHHHHHHHHHHHH
Confidence 33444457788889988888888887664
No 360
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.57 E-value=2.9e+02 Score=31.82 Aligned_cols=103 Identities=14% Similarity=0.172 Sum_probs=59.8
Q ss_pred hcCCCcHHHHHHHHHhHHHHHhhhChH---HHHH----hhhhhhhhhcCCC-----cHHHHHHHHHHHHHhchhhCHH--
Q 010290 288 LLRDNEAEVRIAAAGKVTKICRILNPE---LAIQ----HILPCVKELSSDS-----SQHVRSALATVIMGMAPILGKD-- 353 (513)
Q Consensus 288 ~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~----~l~~~l~~~~~d~-----~~~vr~~~~~~l~~l~~~~~~~-- 353 (513)
...+...+||..+++.+-.+....|.. .+++ .++|.+-.+-.+. +.........++..++..+..-
T Consensus 1182 i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~ 1261 (1514)
T KOG0929|consen 1182 IINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFK 1261 (1514)
T ss_pred HhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344788999999999998888776653 2333 3444443222221 1133344444444455444322
Q ss_pred ---HHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhh
Q 010290 354 ---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 390 (513)
Q Consensus 354 ---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~ 390 (513)
...+.++..+..+.+.++..+-.....||..++...|
T Consensus 1262 ~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~ 1301 (1514)
T KOG0929|consen 1262 QLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNG 1301 (1514)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcc
Confidence 1224445555566677777777778888888876554
No 361
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=62.44 E-value=1.3e+02 Score=27.97 Aligned_cols=194 Identities=13% Similarity=0.103 Sum_probs=79.2
Q ss_pred cHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcH-HHHHHHHHHHHHhchhhCHHHHHH-hHHHHHHHhcCCC
Q 010290 293 EAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ-HVRSALATVIMGMAPILGKDATIE-QLLPIFLSLLKDE 370 (513)
Q Consensus 293 ~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~~~~~~~-~l~~~l~~~l~d~ 370 (513)
...+|.+|+.++..+.. +.+.....++..+...-.+.+. ......+..+-..-.....+.... .---.+..++.|.
T Consensus 51 ~f~lR~AA~~c~kay~~--~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn 128 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFY--NNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDN 128 (312)
T ss_dssp -HHHHHHHHHHHHHHHT--T-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-
T ss_pred chHHHHHHHHHHHHHHh--cCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcC
Confidence 57899999999999876 3343333333333222222210 111113333222111111111111 1112344555554
Q ss_pred ChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhh----c-CCChhHHHHHHHHHHHHHHHhChh---hHHH-HHHHHH
Q 010290 371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA----E-DRHWRVRLAIIEYIPLLASQLGVG---FFDD-KLGALC 441 (513)
Q Consensus 371 ~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~----~-~~~~~vR~~~~~~l~~l~~~~~~~---~~~~-~~~~~l 441 (513)
+.-|..+.+. ......-|.+. ..++..+..++ . +.+.+++.+.+..+......+... ++.+ .-++.+
T Consensus 129 -~~~Ke~al~V-~~~~~~~ge~~--vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~L 204 (312)
T PF04869_consen 129 -PEAKEQALRV-TEGDESSGEEP--VTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSL 204 (312)
T ss_dssp -HHHHHHHTT---EE--STTS----EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHH
T ss_pred -HHHHHHHHcc-cCCCCCCCCCc--ccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHH
Confidence 4445544443 11112222222 13344444332 2 457788888888877666543221 1111 134555
Q ss_pred HHH---hcCchhHHHHHHHHHHHHHHHHhChh--hHhhhhHHHHHhhhcCcchHHH
Q 010290 442 MQW---LKDKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVALIKSSRNLVLN 492 (513)
Q Consensus 442 ~~~---l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~i~~~L~~~~~~~~~~~r 492 (513)
+.. -.+.+.-|+.-++-.||...+...++ +-...+.+.|.+-+.-.+|..|
T Consensus 205 i~~~~~~~~~~~~VqGL~A~LLGicyef~~~~s~~~R~~l~~ll~~riG~d~y~~k 260 (312)
T PF04869_consen 205 IEFSNQSSSEDVLVQGLCAFLLGICYEFSTKDSPIPRATLHPLLTKRIGRDNYFSK 260 (312)
T ss_dssp HHHHS--TCCCHHHHHHHHHHHHHHHHT-S-SCCC-HHHHHHHHHHHT-HHHHHHH
T ss_pred HHHhhcCCCCcchHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHhcCHHHHHHH
Confidence 553 34566778888888888776644321 1223444444433333344444
No 362
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=62.33 E-value=2.1e+02 Score=30.07 Aligned_cols=125 Identities=13% Similarity=0.122 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhh
Q 010290 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCV 239 (513)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 239 (513)
....+++.+..+..|+-+.|+..++..+..+...-+. -...|+-.+.+-+.|++..+...|-..|..+...=|. +.
T Consensus 301 ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPE--qE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPn--MK 376 (988)
T KOG2038|consen 301 LYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPE--QENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPN--MK 376 (988)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCc--ce
Confidence 3455677777788899999999999988887754332 3445777778888999888888887777665543221 11
Q ss_pred hhHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHh
Q 010290 240 AHILPVIVNFSQ--DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRL 288 (513)
Q Consensus 240 ~~l~~~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~ 288 (513)
..++.-+..++= +-+.+....++..|.++.-.-........++.+++.+
T Consensus 377 ~Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~l 427 (988)
T KOG2038|consen 377 IVVIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFSL 427 (988)
T ss_pred eehHHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHHH
Confidence 223344444332 2233444555566666543322222334455555444
No 363
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=62.20 E-value=91 Score=26.62 Aligned_cols=107 Identities=13% Similarity=0.020 Sum_probs=50.4
Q ss_pred hhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcCh--HHHHhhHHHHHHHhhcCCCcc--hhhhHHhhhHhhcCCCCHH
Q 010290 84 ANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE--QDVVEHFIPLVKRLAAGEWFT--ARVSSCGLFHVAYPSAPEA 159 (513)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~l~~d~~~~--~R~~~~~~l~~~~~~~~~~ 159 (513)
...++..+.++..+.=+.||..|..++..+...-.+ ..+. . .+.+......+... .-......+..+++...-+
T Consensus 5 ~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~-~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~~ 82 (193)
T PF12612_consen 5 VQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIP-H-REELQDIFPSESEASLNWSSSSEYFPRLVKLLDLP 82 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC-c-HHHHHHHcccccccccccCCHHHHHHHHHHHhccH
Confidence 344555555555677788999999999998833212 0111 1 12333322221110 0011222223222222222
Q ss_pred -HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHH
Q 010290 160 -LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAA 192 (513)
Q Consensus 160 -~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~ 192 (513)
+...++..+.--....+..+.+.+..+|-.+..
T Consensus 83 ~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~ 116 (193)
T PF12612_consen 83 EYRYSLLSGLVVSAGGLTESLVRASSAALLSYLR 116 (193)
T ss_pred HHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555554
No 364
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=61.10 E-value=92 Score=25.56 Aligned_cols=110 Identities=9% Similarity=0.141 Sum_probs=70.8
Q ss_pred HHHHHHhcCCCC------hHHHHHHHHHHHHhhhh--hhhhhhhhhHHHHHHHhhcCC--ChhHHHHHHHHHHHHHHHhC
Q 010290 360 LPIFLSLLKDEF------PDVRLNIISKLDQVNQV--IGIDLLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLG 429 (513)
Q Consensus 360 ~~~l~~~l~d~~------~~vr~~a~~~l~~i~~~--~~~~~~~~~l~~~l~~l~~~~--~~~vR~~~~~~l~~l~~~~~ 429 (513)
++.+.+.+.++. .++-.-++.++..+.+. ++++.+.+.++..+....+.. +..+-+.++..+..++.. +
T Consensus 13 l~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~-S 91 (160)
T PF11841_consen 13 LTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLN-S 91 (160)
T ss_pred HHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhC-C
Confidence 455555555543 24555566666666653 455556666666666665543 466777788888777653 1
Q ss_pred hhhH----HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh
Q 010290 430 VGFF----DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 470 (513)
Q Consensus 430 ~~~~----~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 470 (513)
+..+ .+-=++-++..+.+++++++..|...+..+...-+++
T Consensus 92 ~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 92 PKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 1111 1123677788888899999999999999988876554
No 365
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.94 E-value=40 Score=28.89 Aligned_cols=86 Identities=17% Similarity=0.191 Sum_probs=53.9
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHhhccCChh--hhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcccc
Q 010290 202 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS 279 (513)
Q Consensus 202 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 279 (513)
.++|.|..-+.+.+...|..|-+.+..+....+++ ...+.++..+...+...+-+|...+++.|..+....+- ...
T Consensus 114 ~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~--vG~ 191 (262)
T KOG3961|consen 114 PYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGC--VGA 191 (262)
T ss_pred HHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc--cch
Confidence 46677776666666666777777766666555532 23455677777777777777877788888777654331 123
Q ss_pred chHHHHHHhc
Q 010290 280 DVVPAYVRLL 289 (513)
Q Consensus 280 ~ll~~l~~~l 289 (513)
.++|++-+++
T Consensus 192 aLVPfYRQlL 201 (262)
T KOG3961|consen 192 ALVPFYRQLL 201 (262)
T ss_pred hhhhHHHHhh
Confidence 4555554443
No 366
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.08 E-value=1.5e+02 Score=29.37 Aligned_cols=98 Identities=15% Similarity=0.177 Sum_probs=66.4
Q ss_pred hcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhh----hhhHHHHH
Q 010290 327 LSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAI 402 (513)
Q Consensus 327 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~----~~~l~~~l 402 (513)
.+.+++|..=..+|..+..--.. .......+.+.+++..+.|..-|+..|..+++.+|.... .+.+++.+
T Consensus 13 ~l~~pDWa~NleIcD~IN~~~~~------~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~em 86 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINSTEGG------PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEM 86 (470)
T ss_pred cccCccHHHHHHHHHHHhcCccC------cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 44677888877777776443211 124566778888888888888888888888888776432 23455555
Q ss_pred HHhhc-C-CChhHHHHHHHHHHHHHHHhCh
Q 010290 403 VELAE-D-RHWRVRLAIIEYIPLLASQLGV 430 (513)
Q Consensus 403 ~~l~~-~-~~~~vR~~~~~~l~~l~~~~~~ 430 (513)
..... . .+..||..++.+|......++.
T Consensus 87 Vk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 87 VKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 44443 3 4677888888888888877655
No 367
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.15 E-value=2.2e+02 Score=28.62 Aligned_cols=97 Identities=22% Similarity=0.235 Sum_probs=52.9
Q ss_pred CCCCcH-HHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCch--HHHHHHHHHhhc-ccccccC
Q 010290 6 EPLYPI-AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDD--EVLLAMAEELGV-FIPYVGG 80 (513)
Q Consensus 6 ~~~~~i-~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~--~vr~~~~~~l~~-~~~~~~~ 80 (513)
|+..|+ ..+-+++++++...+.+|+-.|......-.. ++++..+.- +.+++- ++-..++-.||. |+-.+.+
T Consensus 446 ~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~----eevl~lL~Pi~~std~pie~~~~asltLg~vFvGtcng 521 (881)
T COG5110 446 EERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQA----EEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNG 521 (881)
T ss_pred cccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcH----HHHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCc
Confidence 445554 4455779999999999998777655432223 344444443 334333 677777777874 4333333
Q ss_pred chhhhhhhH-HHHHh-hccchhHHHHHHH
Q 010290 81 LEYANVLLP-PLETL-CTVEETCVRDKAV 107 (513)
Q Consensus 81 ~~~~~~l~~-~l~~l-~~~~~~~vR~~a~ 107 (513)
+ ....++. +++.- ...+.+.+|-.|+
T Consensus 522 D-~ts~ilqtf~Er~~~e~~tqw~RFlaL 549 (881)
T COG5110 522 D-LTSLILQTFVERGKIESETQWFRFLAL 549 (881)
T ss_pred h-HHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 2 2333333 33322 2344555666654
No 368
>PRK04330 hypothetical protein; Provisional
Probab=55.24 E-value=76 Score=22.82 Aligned_cols=54 Identities=17% Similarity=0.125 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCch--hHHHHHHHHHHHHHHHHhCh-hhHhhhhHHHHHhhhcCcc
Q 010290 435 DKLGALCMQWLKDKV--YSIRDAAANNVKRLAEEFGP-DWAMQHIVPQVALIKSSRN 488 (513)
Q Consensus 435 ~~~~~~l~~~l~d~~--~~VR~~a~~~l~~l~~~~~~-~~~~~~i~~~L~~~~~~~~ 488 (513)
++.+..+.+..+|+. .++|.+|-++...|...-.. ..-....+..|.+..+|||
T Consensus 12 k~~~~~L~~I~~D~sVPRNIRraa~ea~~~L~~e~~~~~vRaA~AIs~LdeIs~DPN 68 (88)
T PRK04330 12 KQAIQMLEEIINDTSVPRNIRRAATEAKEILLNEEESPGVRAATAISILDEISNDPN 68 (88)
T ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHhhcCCC
Confidence 456677777777765 38999999988887654322 2223677888888889986
No 369
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=54.49 E-value=58 Score=24.35 Aligned_cols=53 Identities=13% Similarity=0.013 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHh---hhhHHHHHhhhcC
Q 010290 434 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM---QHIVPQVALIKSS 486 (513)
Q Consensus 434 ~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~---~~i~~~L~~~~~~ 486 (513)
.+.++.++...+.+=.++||.-+.+.+.-+.+..++.... .++++....++..
T Consensus 9 ~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 9 FPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 3456777777788888889999999999888888776222 4556665555543
No 370
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=54.27 E-value=1.2e+02 Score=25.38 Aligned_cols=55 Identities=9% Similarity=0.102 Sum_probs=25.4
Q ss_pred CcHHHHHHHHHHHHHhchh-hCHHHHH--HhHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 010290 331 SSQHVRSALATVIMGMAPI-LGKDATI--EQLLPIFLSLLKDEFPDVRLNIISKLDQV 385 (513)
Q Consensus 331 ~~~~vr~~~~~~l~~l~~~-~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~i 385 (513)
.+......++.|+..++.. .|-..+. +..++.+...+..++..+|..++..|..+
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAAL 185 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 3444555555555555432 1211111 33445555555555556666555555544
No 371
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.67 E-value=3.1e+02 Score=29.32 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=20.9
Q ss_pred HHHHHHHHhc-CchhHHHHHHHHHHHHHHHH
Q 010290 437 LGALCMQWLK-DKVYSIRDAAANNVKRLAEE 466 (513)
Q Consensus 437 ~~~~l~~~l~-d~~~~VR~~a~~~l~~l~~~ 466 (513)
-...+..++. |+...||..+++.+..+...
T Consensus 252 q~d~l~q~~ked~~kivr~~vl~kl~~La~r 282 (970)
T KOG1988|consen 252 QSDVLLQFLKEDERKIVRLKVLRKLDFLAKR 282 (970)
T ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHHhhh
Confidence 3455566665 77788888888877777665
No 372
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=52.24 E-value=1.4e+02 Score=25.03 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=34.8
Q ss_pred CCChHHHHHHHHHHHHhhhh-hhhhhh--hhhHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 010290 369 DEFPDVRLNIISKLDQVNQV-IGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (513)
Q Consensus 369 d~~~~vr~~a~~~l~~i~~~-~~~~~~--~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~ 425 (513)
+.+......++.|+..++.. .|.+.+ .+..+..+...+.+++..+|..+++.++.++
T Consensus 127 ~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 127 EEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 34566777778888777543 233322 1455666666677777778887777776654
No 373
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.59 E-value=2.5e+02 Score=27.69 Aligned_cols=54 Identities=9% Similarity=0.097 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhh--hhhhHHHHHHHHHHhhhc
Q 010290 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE--AAHLKSEIMSIFEELTQD 213 (513)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~l~~d 213 (513)
....+++.+.++..-.++..|+.....+-.+.-.-| +..+...++|.+..++.+
T Consensus 342 ~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~ 397 (791)
T KOG1222|consen 342 EQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDS 397 (791)
T ss_pred HhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCC
Confidence 445677778888877788888877777666543222 223333455655555543
No 374
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.17 E-value=1e+02 Score=29.13 Aligned_cols=65 Identities=14% Similarity=0.063 Sum_probs=40.2
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 010290 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKR 462 (513)
Q Consensus 398 l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~-~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~ 462 (513)
....+..+.++++..-|..++..++...-..+ ...-.+++-+.+..++.|+++.||..++.+|++
T Consensus 8 ~~~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~ 73 (364)
T COG5330 8 TDQDLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQ 73 (364)
T ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHh
Confidence 34445555666666666666555555444433 233344567777777788888888888877765
No 375
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=50.81 E-value=2.7e+02 Score=27.75 Aligned_cols=336 Identities=11% Similarity=0.089 Sum_probs=157.8
Q ss_pred HhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh----hh
Q 010290 123 VEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA----AH 198 (513)
Q Consensus 123 ~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~ 198 (513)
...+..++.....--.+..|...+.++..+-.. ..-...++++.|+.++.-.+...|+.+...+..-.+.+.. +.
T Consensus 18 P~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk-~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~kn~k 96 (616)
T KOG2229|consen 18 PSELKDLLRTNHTVLPPELREKIVKALILLRNK-NLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHKNDK 96 (616)
T ss_pred hHHHHHHHHhccccCCHHHHHHHHHHHHHHhcc-CcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhcccch
Confidence 334555555444444577788777776544322 2235678899999988877788888887777776665543 22
Q ss_pred hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhh-hhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc
Q 010290 199 LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCV-AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT 277 (513)
Q Consensus 199 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 277 (513)
....+-.++..++.++++. .|..++..+++.+...... ..-+.++...+-+.++++..+.+..+-.--..-.++..
T Consensus 97 lnkslq~~~fsml~~~d~~---~ak~a~~~~~eL~kr~iW~d~~tV~i~~~acf~~~~ki~vs~l~FfL~~D~~dee~ds 173 (616)
T KOG2229|consen 97 LNKSLQAFMFSMLDQSDST---AAKMALDTMIELYKRNIWNDSKTVNIITTACFSKVPKILVSGLRFFLGADNEDEEDDS 173 (616)
T ss_pred HHHHHHHHHHHHHhCCCch---hHHHHHHHHHHHHHhcccccchhHHHHHHHHhccCcHHHHhhhHHhccCCcccccccc
Confidence 3334555566666666643 6666666655554433221 11233333333344444443333222111000000000
Q ss_pred -------ccchHHHHHHhcCCCcHHHHHHHH-HhHHHHHh------------------hhChHHHHHhhhhhhhhhcCCC
Q 010290 278 -------RSDVVPAYVRLLRDNEAEVRIAAA-GKVTKICR------------------ILNPELAIQHILPCVKELSSDS 331 (513)
Q Consensus 278 -------~~~ll~~l~~~l~d~~~~vr~~a~-~~l~~~~~------------------~~~~~~~~~~l~~~l~~~~~d~ 331 (513)
.+.+-..+.+..... ..-|.+.+ ++...+-+ .-+++.+.+.+++.+... ..
T Consensus 174 d~~~d~dg~~~~~l~~~~vnkk-tkkr~~kl~~a~k~vkkkqk~~~~~~t~nfs~i~ll~DpQ~fAEkLfk~~~~~--~e 250 (616)
T KOG2229|consen 174 DSESDEDGPDADALLHQRVNKK-TKKRQKKLLRAAKSVKKKQKKKKNAPTFNFSAIHLLHDPQGFAEKLFKQLLAC--KE 250 (616)
T ss_pred ccccccccccHHHHHHHHHhcc-chhhHHHHHHHHHHHHHHHhcCCCCCCCCccHHHhhcChhHHHHHHHHHHhhh--hh
Confidence 001111111211111 01111111 11111111 113445666666655444 33
Q ss_pred cHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH-HhhcCCC
Q 010290 332 SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV-ELAEDRH 410 (513)
Q Consensus 332 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~-~l~~~~~ 410 (513)
...+|...+..+..++.. ...+.-.+-|++..++......|-+....+...--..+.++.. +.++..+. ....|.+
T Consensus 251 r~E~klm~~~lisRliG~--HkL~l~~fY~fl~~yl~phqrDvTqIl~~aaQa~Hd~VP~d~i-Epl~k~Ian~FVtD~~ 327 (616)
T KOG2229|consen 251 RFEVKLMLMKLISRLIGI--HKLFLFGFYPFLQRYLQPHQRDVTQILAAAAQASHDLVPPDII-EPLLKTIANNFVTDEN 327 (616)
T ss_pred hHHHHHHHHHHHHHHhhh--hHHHHhhhHHHHHHHcCcchhhHHHHHHHHHHhccCCCChHHh-hHHHHHHHHHhcccCC
Confidence 467788888887777642 2333445778889999888776655444443333333344433 33333333 3444442
Q ss_pred -hhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh
Q 010290 411 -WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 470 (513)
Q Consensus 411 -~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 470 (513)
..+-...+.++-.+...+... ..+.++.-+-..-......| ..|+.++-.+...+.++
T Consensus 328 spEv~~vgiN~iREic~Rvpla-MteeLLqDLa~YK~sk~K~V-~maarSLI~L~Rev~P~ 386 (616)
T KOG2229|consen 328 SPEVMAVGINAIREICERVPLA-MTEELLQDLASYKTSKKKVV-MMAARSLIALYREVLPD 386 (616)
T ss_pred CcceeehhhhHHHHHHhhcchh-hcHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHCHH
Confidence 334444444444443332111 11123333333333333333 44555555565554443
No 376
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=50.20 E-value=2.2e+02 Score=26.56 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=14.1
Q ss_pred HHhhhHhhcCCCCHHHH----HHHHHHHHHHcCCC
Q 010290 145 SCGLFHVAYPSAPEALK----TELRTIYRQLCQDD 175 (513)
Q Consensus 145 ~~~~l~~~~~~~~~~~~----~~l~~~l~~l~~d~ 175 (513)
++..+..+.+..+++.. +.+.+.+..++.|+
T Consensus 21 gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~ 55 (322)
T cd07920 21 GSRFLQQKLEEATPEEKELIFDEILPHVVELMVDP 55 (322)
T ss_pred hhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCc
Confidence 44445555555555422 23334444444444
No 377
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=49.69 E-value=2e+02 Score=25.90 Aligned_cols=55 Identities=11% Similarity=0.078 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHHhchhhCHHHHH----HhHHHHHHHhcCCCChHHHHHHHHHHHHhh
Q 010290 332 SQHVRSALATVIMGMAPILGKDATI----EQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (513)
Q Consensus 332 ~~~vr~~~~~~l~~l~~~~~~~~~~----~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~ 386 (513)
...+|.+.+..++.+.+.-..+... ..++|.+++.++-+..--+..|.-.+.++.
T Consensus 109 ~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 109 FEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred cchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3578888888888888644433221 456777777776665555655555555554
No 378
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=48.80 E-value=1.9e+02 Score=31.72 Aligned_cols=108 Identities=15% Similarity=0.077 Sum_probs=67.9
Q ss_pred CCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCC--ChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHh
Q 010290 368 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 445 (513)
Q Consensus 368 ~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~--~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l 445 (513)
.|.+-.-+..|+..|...-... ....|...+.|+ -|++|.+|+.+|+..+.....-.-.++++..+.+..
T Consensus 653 ~drDVvAQ~EAI~~le~~p~~~--------s~~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~f 724 (1180)
T KOG1932|consen 653 QDRDVVAQMEAIESLEALPSTA--------SRSALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKF 724 (1180)
T ss_pred hcccHHHHHHHHHHHHcCCcch--------hHHHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHh
Confidence 6777777778888777664432 225566666665 589999999999988765322222345555555543
Q ss_pred cCc--------------hhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhhc
Q 010290 446 KDK--------------VYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKS 485 (513)
Q Consensus 446 ~d~--------------~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~ 485 (513)
.+. ..-|+.+.-.+++.+-..-|. ..+.+.+.|.+++.
T Consensus 725 c~k~stIpKsNnF~~~q~Yfvq~~iP~a~a~lR~~~g~--cp~~V~~FlLdLlk 776 (1180)
T KOG1932|consen 725 CSKDSTIPKSNNFSNFQEYFVQCAIPVAFASLRGREGK--CPKEVKAFLLDLLK 776 (1180)
T ss_pred ccccCCCCCcCccccHHHHHHHHhhHHHHHHhccccCC--ChHHHHHHHHHHhh
Confidence 221 234777766666666655554 34677788887663
No 379
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=48.80 E-value=2.3e+02 Score=26.41 Aligned_cols=8 Identities=38% Similarity=0.663 Sum_probs=3.4
Q ss_pred HHHhcCCC
Q 010290 363 FLSLLKDE 370 (513)
Q Consensus 363 l~~~l~d~ 370 (513)
+.++..|+
T Consensus 270 l~~l~~d~ 277 (322)
T cd07920 270 LDTLMKDQ 277 (322)
T ss_pred HHHHhCCC
Confidence 34444443
No 380
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=47.98 E-value=4.1e+02 Score=29.06 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=34.8
Q ss_pred CCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHH-----HHhcCchhHHHHHHHHHHHHHHHHhCh
Q 010290 408 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM-----QWLKDKVYSIRDAAANNVKRLAEEFGP 469 (513)
Q Consensus 408 ~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~-----~~l~d~~~~VR~~a~~~l~~l~~~~~~ 469 (513)
+.+-.+|...+..+..+... ..+++...++..+. ...-|.+..||..+...+..++.....
T Consensus 441 ~s~~~Vrik~~~~l~~~~l~-nr~~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~C~t 506 (1697)
T KOG3687|consen 441 ESRGAVRIKVLDVLSFVLLI-NRQFYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEGCHT 506 (1697)
T ss_pred cccceEEEeeHHHHHHHHhh-hhhhhHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhhcch
Confidence 44556666666666665543 22333333332221 122366678888888888888776554
No 381
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=47.90 E-value=3.9e+02 Score=28.81 Aligned_cols=63 Identities=22% Similarity=0.202 Sum_probs=48.6
Q ss_pred cCchhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhhcCcc----hHHHHHHHHHHHhcccceeeh
Q 010290 446 KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKSSRN----LVLNSVLSLLKNAGIDAVFYM 509 (513)
Q Consensus 446 ~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~~~~----~~~r~~~~~~~~i~~~~~~~~ 509 (513)
+|-..+||..+.+.++.....+| +.+...+...+.+..+.|+ +++-.++.++..+|.+++.||
T Consensus 370 ~dye~~vr~~~~~~l~~~f~~~~-~i~~~~~~~~ie~~~t~P~~~d~~~~~~a~~a~~g~g~~av~~~ 436 (947)
T COG5657 370 TDYEVNVRPCIENELKDLFDVFG-RIAVGHELTVIESEATTPNILDEARQLFAAYASFGLGVEAVNRM 436 (947)
T ss_pred ccchhhhhHHHHHHHHHHHHHHh-hHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 45667899999999999999998 5555667777777777772 344467788888999999887
No 382
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=47.05 E-value=2.6e+02 Score=26.64 Aligned_cols=201 Identities=16% Similarity=0.159 Sum_probs=90.6
Q ss_pred HHhcCccHHHHHHHhhcHHHHHH-HhChHhhhh---hhhhhhhh-ccCCchHHHHHHHHHhhccccccc----Cchhhhh
Q 010290 16 DELKNDDIQLRLNSIRRLSTIAR-ALGEERTRK---ELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVG----GLEYANV 86 (513)
Q Consensus 16 ~~l~~~d~~~r~~a~~~l~~i~~-~~~~~~~~~---~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~----~~~~~~~ 86 (513)
...+....+.|..++..+.-.+. .+-++++.+ .+...+.. .+.+..+-...++..+|..+-..| ++.....
T Consensus 67 de~~dk~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~q~~ee~~~t 146 (427)
T KOG2842|consen 67 DEVKDKSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPGQEEEEWTKT 146 (427)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCcchhhHHHhc
Confidence 33455666788888877654432 222444433 33344444 444444444444445554333233 2345556
Q ss_pred hhHHHHHhhccchhHH--HHHHHHHHHHHHhhcCh--HHHHhhHHHHH----HHhhcCCCcchhhhHHh---------hh
Q 010290 87 LLPPLETLCTVEETCV--RDKAVESLCRIGSQMRE--QDVVEHFIPLV----KRLAAGEWFTARVSSCG---------LF 149 (513)
Q Consensus 87 l~~~l~~l~~~~~~~v--R~~a~~~l~~l~~~~~~--~~~~~~~~~~l----~~l~~d~~~~~R~~~~~---------~l 149 (513)
..|.+..+..+++..| |..++.+++..+-.... ......++-.. .....+++..+-.++.. .-
T Consensus 147 ~~~~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 226 (427)
T KOG2842|consen 147 LGPFLALILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLEESFGAVYLEDDETVVVCACQNLGLLLTCLTAW 226 (427)
T ss_pred cchHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcccCCCccccccchhHHHHHHHHHH
Confidence 6666666666665555 44444444433222111 11111111111 11122222111111110 00
Q ss_pred H---hhcCC-CCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh---h---hhHHHHHHHHHHhhhccch
Q 010290 150 H---VAYPS-APEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---A---HLKSEIMSIFEELTQDDQD 216 (513)
Q Consensus 150 ~---~~~~~-~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~---~~~~~l~~~l~~l~~d~~~ 216 (513)
+ .++.. .++..-.-++|.+..++.....++|..+.+.+.-+...... + ...+.+...+..+.+|.+.
T Consensus 227 a~~Lti~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~lr~latdssK 303 (427)
T KOG2842|consen 227 SLLLTICPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTLRDLATDSSK 303 (427)
T ss_pred HHHHHcCccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHHHHHHHhhhh
Confidence 0 11111 11222233557777777777777777777776666554322 1 1245666666666666654
No 383
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=44.00 E-value=1.1e+02 Score=23.47 Aligned_cols=34 Identities=15% Similarity=0.037 Sum_probs=24.4
Q ss_pred hhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 010290 394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (513)
Q Consensus 394 ~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~ 427 (513)
+.+..++.+.+-+.|++..|...|+..+...+..
T Consensus 5 f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~ 38 (115)
T PF14663_consen 5 FEDWGIELLVTQLYDPSPEVVAAALEILEEACED 38 (115)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 4456677777777888888888777777666643
No 384
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=43.45 E-value=1.9e+02 Score=23.84 Aligned_cols=97 Identities=8% Similarity=0.036 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHhhcc--CChhhhhhhHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhc
Q 010290 217 SVRLLAVEGCGALGKL--LEPQDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLL 289 (513)
Q Consensus 217 ~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~---~~~~~~ll~~l~~~l 289 (513)
+.-..++.++..+.++ ++=+...+.++.-+....+.. +..+...+...|..+...... ....+--++.+...+
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hL 111 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHL 111 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHH
Confidence 4445555565555553 111222222333333333221 345666666666666543211 111234567778888
Q ss_pred CCCcHHHHHHHHHhHHHHHhhhCh
Q 010290 290 RDNEAEVRIAAAGKVTKICRILNP 313 (513)
Q Consensus 290 ~d~~~~vr~~a~~~l~~~~~~~~~ 313 (513)
++++++++..|+..+..+....+.
T Consensus 112 q~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 112 QVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCCh
Confidence 888889998888888777665443
No 385
>COG2733 Predicted membrane protein [Function unknown]
Probab=40.10 E-value=3.4e+02 Score=25.97 Aligned_cols=129 Identities=12% Similarity=0.113 Sum_probs=72.7
Q ss_pred hHHHHHHHHHhhccccc--ccCchhh-----hhhhHHHHHhhccc--hhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHH
Q 010290 61 DEVLLAMAEELGVFIPY--VGGLEYA-----NVLLPPLETLCTVE--ETCVRDKAVESLCRIGSQMREQDVVEHFIPLVK 131 (513)
Q Consensus 61 ~~vr~~~~~~l~~~~~~--~~~~~~~-----~~l~~~l~~l~~~~--~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 131 (513)
|+-+...+..++.|+.. +..+... ..+...+-..+.++ -..|-....+.+..+...++++.++..+-..+.
T Consensus 77 prNKdri~e~l~~FV~~~fLs~e~i~~Kl~~~~~a~~igewls~~en~~~v~~~t~~l~~~~~~lld~~~iq~~ik~~v~ 156 (415)
T COG2733 77 PRNKDRIGENLGQFVQNNFLSPESINEKLRRADIASRIGEWLSQPENAQRVSQETLKLLSQLLELLDDDDIQRVIKRAVI 156 (415)
T ss_pred cccHHHHHHHHHHHHHHcccChHHHHHHHHhcCHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 55677788888877752 2211111 12233344444443 344555666677778888888888777766665
Q ss_pred HhhcCCCcchhhhHHhhhHhhcCCCCHH-HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHH
Q 010290 132 RLAAGEWFTARVSSCGLFHVAYPSAPEA-LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAAT 193 (513)
Q Consensus 132 ~l~~d~~~~~R~~~~~~l~~~~~~~~~~-~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 193 (513)
+.....++.. .+..++..+...-+.+ ..++++..+...+.+ ..+++.+...+..+.+.
T Consensus 157 ~~i~e~~~~~--~~~~vL~~l~~d~r~q~l~D~~~~~L~r~~~~--~~v~~~i~~~i~r~~~e 215 (415)
T COG2733 157 RAIAEVYLGP--TAGRVLESLTADDRHQALLDKLIDRLIRWLLN--DKVREFIAAVIVRYLEE 215 (415)
T ss_pred HHHhcccccc--hHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHh
Confidence 5544433332 3445555555544433 556666666665543 36666666666666553
No 386
>PHA02861 uncharacterized protein; Provisional
Probab=37.73 E-value=2.1e+02 Score=22.74 Aligned_cols=115 Identities=13% Similarity=0.056 Sum_probs=59.3
Q ss_pred cCCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcC
Q 010290 57 NDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAG 136 (513)
Q Consensus 57 ~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d 136 (513)
...+++|+......+..-+.-....+....+...|+.+-.|.+.-.+. -+..+.+.++.+.+.. ....+..+..+
T Consensus 13 ~~~~DdI~~~i~dYiyWSs~~~r~Re~AG~vf~vl~SFr~DA~~VFg~----~lr~fVk~~~~~~v~~-~~~~I~~~l~~ 87 (149)
T PHA02861 13 LNRDDDIRQIIVDYIYWSMYSYRSRSPAGKVFQVLKMFRRDSEIVFGE----NFRHIVKNFKTLGIED-TVQAVKCFTVG 87 (149)
T ss_pred CCccchHHHHHHHHHHHhhccccccCccchHHHHHHHHHhhHHHHHHH----HHHHHHHhCCccchHh-HHHHHHHHhcc
Confidence 346677898888888766655554455566777776665444332221 2334555554443322 23445555544
Q ss_pred CCcchhhh--HHhhhHhhcCCCCHH-----HHHHHHHHHHHHcCCCch
Q 010290 137 EWFTARVS--SCGLFHVAYPSAPEA-----LKTELRTIYRQLCQDDMP 177 (513)
Q Consensus 137 ~~~~~R~~--~~~~l~~~~~~~~~~-----~~~~l~~~l~~l~~d~~~ 177 (513)
+ ...|.+ .+.+++..++..|.+ .--+.+.++..++.|.+.
T Consensus 88 e-n~irE~cAiIGL~A~~AeYWGged~Pt~~S~~vl~l~~~Llsd~d~ 134 (149)
T PHA02861 88 K-NALRESVSMVDLCASLAEYWGGEDLPTNDSLQALKLMTILLSDDDY 134 (149)
T ss_pred c-HHHHHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhhhccH
Confidence 3 233332 223444444444333 234455666666666553
No 387
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=37.55 E-value=2.8e+02 Score=25.21 Aligned_cols=61 Identities=31% Similarity=0.362 Sum_probs=40.9
Q ss_pred CCCCcHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhhccCCchHHHHHHHHHhhcc
Q 010290 6 EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVF 74 (513)
Q Consensus 6 ~~~~~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~ 74 (513)
|-+.-+..++..|+.+|+..| .+.+.++.. .-..+.|+|.+..+.+ ++.+-..+.+.+..+
T Consensus 10 dcl~~LkdL~r~lr~dd~~~~-~v~r~lg~~------~iv~~DLiPiL~~~~~-~~~l~~~~l~LLV~L 70 (266)
T PF04821_consen 10 DCLECLKDLKRFLRRDDEDQR-DVRRQLGEW------NIVQKDLIPILISYKD-DDKLFLACLRLLVNL 70 (266)
T ss_pred hHHHHHHHHHHHHHHhCcchH-HHHHHHHHh------chhhhhHHHHHHhccC-chHHHHHHHHHHHHh
Confidence 345668889999999998887 444443322 2345689999988444 566767777766543
No 388
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=37.49 E-value=74 Score=23.82 Aligned_cols=66 Identities=17% Similarity=0.075 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhCh---hhHHHHHHHHHHHH--hcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHh
Q 010290 414 RLAIIEYIPLLASQLGV---GFFDDKLGALCMQW--LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVAL 482 (513)
Q Consensus 414 R~~~~~~l~~l~~~~~~---~~~~~~~~~~l~~~--l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~ 482 (513)
|...+..++.++..... ......-+|.++.. ..|.+|-+|+-|+-++..+++...+ .+.++..|..
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~e---NQ~~I~~L~~ 73 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPE---NQEFIAQLEP 73 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHH---HHHHHHhccc
Confidence 45556666666543211 11111246777774 4678999999999999999885432 2556666654
No 389
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.29 E-value=4.2e+02 Score=26.19 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=69.6
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHH
Q 010290 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 438 (513)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~ 438 (513)
+...+..+-++..+.+--.-...|..++..-..+ + ......|..++......+|..+++.+..+.-. ...|...++
T Consensus 8 l~~lIeelT~sg~~~~~p~~~k~lkkiv~~sdee-~-~~~~~~L~~~~~~~h~~vR~l~lqii~elF~r--s~~FR~lii 83 (661)
T KOG2374|consen 8 LIGLIEELTKSGAQEVDPRLLKALKKIVRYSDEE-V-RLSSQTLMELMRHNHSQVRYLTLQIIDELFMR--SKLFRTLII 83 (661)
T ss_pred HHHHHHHHhhcCCcccChHHHHHHHHHHhccHHH-H-HHHHHHHHHHHhhcCchHHHHHHHHHHHHHHh--hHHHHHHHH
Confidence 4445555666666666666667777777664443 2 45566677777777888999999988777543 222333333
Q ss_pred HHHHHHh-----cCch----------hHHHHHHHHHHHHHHHHhChhh
Q 010290 439 ALCMQWL-----KDKV----------YSIRDAAANNVKRLAEEFGPDW 471 (513)
Q Consensus 439 ~~l~~~l-----~d~~----------~~VR~~a~~~l~~l~~~~~~~~ 471 (513)
.-+-.+| .+|+ ..+|.+|..++..+-+.+|..+
T Consensus 84 ~n~~efLeL~~gt~p~~PLP~p~~~a~~Lr~~ai~~~e~Wnekfg~~y 131 (661)
T KOG2374|consen 84 ENLDEFLELSIGTRPNLPLPAPPAVATTLRSKAIEFLEKWNEKFGFHY 131 (661)
T ss_pred hCHHHHHHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3333322 2222 3689999999999999988764
No 390
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=37.21 E-value=1.8e+02 Score=21.78 Aligned_cols=53 Identities=13% Similarity=-0.014 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhh---hhHHHHHHHHHHhhhc
Q 010290 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA---HLKSEIMSIFEELTQD 213 (513)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~d 213 (513)
.+.++..+...+.+=.+.||..+.+.|.-+.+.++++ ..+..+++.+..++.-
T Consensus 9 ~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 9 FPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 3445566666777778899999999999888888765 2234566666655543
No 391
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.80 E-value=3.6e+02 Score=25.32 Aligned_cols=250 Identities=13% Similarity=0.108 Sum_probs=113.8
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCC--cHHHHHHHHHhHHHHHhhh--ChH-HHHHhhhhh
Q 010290 249 FSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN--EAEVRIAAAGKVTKICRIL--NPE-LAIQHILPC 323 (513)
Q Consensus 249 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~--~~~-~~~~~l~~~ 323 (513)
+.++++..+-..++.++..+...-+ +.+..+-+..++.++.++ +.++-...++.+..-+-.. ..+ ...-.++|.
T Consensus 115 la~~~~~~~l~ksL~al~~lt~~qp-dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~L 193 (461)
T KOG4199|consen 115 LAESPNESVLKKSLEAINSLTHKQP-DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILEL 193 (461)
T ss_pred HhhCCchhHHHHHHHHHHHhhcCCc-chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHH
Confidence 3455555565556666666554322 222344455566665543 3455555555444433211 111 223356677
Q ss_pred hhhhcCCC-cHHHHHHHHHHHHHhch----------hhCHH--HHHHhHHHHHHHhcCCC-ChHHHHHHHHHHHHhhhh-
Q 010290 324 VKELSSDS-SQHVRSALATVIMGMAP----------ILGKD--ATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQV- 388 (513)
Q Consensus 324 l~~~~~d~-~~~vr~~~~~~l~~l~~----------~~~~~--~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~i~~~- 388 (513)
+.+.+... ..++-+.++.++..+.. ..|.. .....++..+...++-. +|.+-.....+|+.++-.
T Consensus 194 i~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~ 273 (461)
T KOG4199|consen 194 ILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRD 273 (461)
T ss_pred HHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHH
Confidence 76554433 23344455555544421 11111 11122344444444321 255555555555555321
Q ss_pred -hhhhhhhhhHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHhChhhHHH-----HHHHHHHHHh--cCchhHHHHHHHHH
Q 010290 389 -IGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGFFDD-----KLGALCMQWL--KDKVYSIRDAAANN 459 (513)
Q Consensus 389 -~~~~~~~~~l~~~l~~l~~~~-~~~vR~~~~~~l~~l~~~~~~~~~~~-----~~~~~l~~~l--~d~~~~VR~~a~~~ 459 (513)
+-.......=+..+.+.+.|. .-..|..+=.+++.+....|.+...+ ...|.+..++ ...+|.|-++++-+
T Consensus 274 E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~ 353 (461)
T KOG4199|consen 274 EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAI 353 (461)
T ss_pred HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHH
Confidence 000001112234455555553 34455444334433333334443322 2344444432 24567889999999
Q ss_pred HHHHHHHhChhhH-------hhhhHHHHHhhhcCc--chHHHHHHHHHHHhc
Q 010290 460 VKRLAEEFGPDWA-------MQHIVPQVALIKSSR--NLVLNSVLSLLKNAG 502 (513)
Q Consensus 460 l~~l~~~~~~~~~-------~~~i~~~L~~~~~~~--~~~~r~~~~~~~~i~ 502 (513)
+..++-.....-. .+-.+. .+..+| ..++|.+..++++|.
T Consensus 354 i~~l~LR~pdhsa~~ie~G~a~~avq---AmkahP~~a~vQrnac~~IRNiv 402 (461)
T KOG4199|consen 354 ISILCLRSPDHSAKAIEAGAADLAVQ---AMKAHPVAAQVQRNACNMIRNIV 402 (461)
T ss_pred HHHHHhcCcchHHHHHhcchHHHHHH---HHHhCcHHHHHHHHHHHHHHHHH
Confidence 9888876544311 122233 333444 346666666665554
No 392
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=35.84 E-value=69 Score=22.23 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=28.4
Q ss_pred CCcHHHHHHHhcCccHHHHHHHhhcHHHHHHHh
Q 010290 8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARAL 40 (513)
Q Consensus 8 ~~~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~ 40 (513)
=|.|.++...-.|.-+.+|..|++.|..|....
T Consensus 38 GYTi~El~~L~RSsv~~QR~~al~~L~~Il~~~ 70 (73)
T PF08620_consen 38 GYTIQELFHLSRSSVPSQRCIALQTLGRILYRA 70 (73)
T ss_pred CcCHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999998886544
No 393
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=35.52 E-value=5.6e+02 Score=27.09 Aligned_cols=148 Identities=11% Similarity=0.075 Sum_probs=80.2
Q ss_pred HHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHH
Q 010290 166 TIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPV 245 (513)
Q Consensus 166 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 245 (513)
.-++.++++++..+...+-..+......-...-+...++.++.+- .+. .++..|..+- +.....++..
T Consensus 7 ~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t---~s~----~~~~il~~~~-----~P~~K~~~~~ 74 (668)
T PF04388_consen 7 TELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLST---NSQ----RALEILVGVQ-----EPHDKHLFDK 74 (668)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhc---CcH----HHHHHHHhcC-----CccHHHHHHH
Confidence 345556666666666666555555544332233444455543321 111 1222222111 1112346666
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc---cccchHHHHHHhc-CCCcHHHHHHHHHhHHHHHhhhChH--HHHHh
Q 010290 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPE--LAIQH 319 (513)
Q Consensus 246 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~ll~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~ 319 (513)
+...+..+ ..|..++..|+.+...-+... ....+++.+++++ .|.+..+-..|+.+|..++..+... .+...
T Consensus 75 l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~ 152 (668)
T PF04388_consen 75 LNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPD 152 (668)
T ss_pred HHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHH
Confidence 66666654 367778788888776544322 1245666666665 5788888899999988888776532 33444
Q ss_pred hhhhhhhh
Q 010290 320 ILPCVKEL 327 (513)
Q Consensus 320 l~~~l~~~ 327 (513)
++..+..+
T Consensus 153 Lf~If~Rl 160 (668)
T PF04388_consen 153 LFNIFGRL 160 (668)
T ss_pred HHHHHHHH
Confidence 44444443
No 394
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=35.02 E-value=2.1e+02 Score=21.97 Aligned_cols=70 Identities=10% Similarity=0.100 Sum_probs=39.8
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChh---hHHHHHHHHHHHHhc----CchhHHHHHHHHHHHHHHH
Q 010290 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLK----DKVYSIRDAAANNVKRLAE 465 (513)
Q Consensus 396 ~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~----d~~~~VR~~a~~~l~~l~~ 465 (513)
..++..+.+.+.......|...+..+..+++..... .|...+.|.+...+. ...+.+|....+.+..+-+
T Consensus 31 ~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ki~kll~iW~~ 107 (121)
T smart00582 31 KEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQDALRDVLGAANDETKKKIRRLLNIWEE 107 (121)
T ss_pred HHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 345555555555444557778888888888775443 233444444433332 2234577776666666554
No 395
>PHA02922 hypothetical protein; Provisional
Probab=34.26 E-value=2.3e+02 Score=22.33 Aligned_cols=114 Identities=12% Similarity=0.079 Sum_probs=57.6
Q ss_pred CCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCC
Q 010290 58 DDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGE 137 (513)
Q Consensus 58 ~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~ 137 (513)
..+++||..+...|..-+.-....+....+...|+.+-.|.+...+. -+..+.+.++.+.+. .-...|..+...+
T Consensus 21 ~~~DdI~~~i~DYiyWSs~~~r~Re~AG~vf~vleSFr~DAe~VFg~----nlr~fVk~~s~~gv~-~s~~~I~c~l~~d 95 (153)
T PHA02922 21 NTVADVRHCLTEYILWVSHRWTHRESAGSLYRLLISFRTDATELFGS----ELKEFSDSLPWDNID-NCVEIIKCFIRND 95 (153)
T ss_pred cccchHHHHHHHHHHHhhccccccCccchHHHHHHHHHhhHHHHHHH----HHHHHHHhCchhhhH-HHHHHHHHHhccc
Confidence 45678999999888765554444455566777777665554332221 233455555444333 2344555555544
Q ss_pred Cc-chhhhH--HhhhHhhcCCCCHH---HHHHHHHHHHHHcCCCc
Q 010290 138 WF-TARVSS--CGLFHVAYPSAPEA---LKTELRTIYRQLCQDDM 176 (513)
Q Consensus 138 ~~-~~R~~~--~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~ 176 (513)
+. ..|.++ +.+++..++..|.+ ..-+++..+..++.|.+
T Consensus 96 n~ktirEa~AiIGLcA~aAeYWGgePt~~S~~vL~Ll~~LLsd~D 140 (153)
T PHA02922 96 SMKTAKELRAIIGLCTQSAIVSGRVFNDKYIDILLMLRKILNEND 140 (153)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhchhH
Confidence 43 334332 22333333333322 23344555555555543
No 396
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=34.16 E-value=2.4e+02 Score=22.50 Aligned_cols=95 Identities=16% Similarity=0.120 Sum_probs=54.6
Q ss_pred CchHHHHHHHHhHHHHHHHhhh-hh-hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhh--hhHHHHHHHhc
Q 010290 175 DMPMVRRSAATNLGKFAATVEA-AH-LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCV--AHILPVIVNFS 250 (513)
Q Consensus 175 ~~~~vr~~a~~~l~~l~~~~~~-~~-~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~~ 250 (513)
.+.+-++++...|..++-.-.. .. ..-..++++...+..++......++..+.+++.--....+. ..-+|.+...+
T Consensus 29 t~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~l 108 (173)
T KOG4646|consen 29 TNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFVL 108 (173)
T ss_pred ccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEeec
Confidence 3556666666666666521100 01 11246677777888888888888887777766432211111 11355566677
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 010290 251 QDKSWRVRYMVANQLYELC 269 (513)
Q Consensus 251 ~d~~~~vr~~~~~~l~~l~ 269 (513)
+++...+-.+++-++..++
T Consensus 109 ssp~e~tv~sa~~~l~~l~ 127 (173)
T KOG4646|consen 109 SSPPEITVHSAALFLQLLE 127 (173)
T ss_pred CCChHHHHHHHHHHHHHhc
Confidence 7877766666665555554
No 397
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=32.17 E-value=3.8e+02 Score=24.08 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=15.3
Q ss_pred HHHHhhcCC--ChhHHHHHHHHHHHHHHH
Q 010290 401 AIVELAEDR--HWRVRLAIIEYIPLLASQ 427 (513)
Q Consensus 401 ~l~~l~~~~--~~~vR~~~~~~l~~l~~~ 427 (513)
.+.++++++ +.-+|.+++.++..++..
T Consensus 115 ~L~~li~~~~~~~yvR~aa~~aL~~l~~~ 143 (249)
T PF06685_consen 115 PLKELIEDPDADEYVRMAAISALAFLVHE 143 (249)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHc
Confidence 344445544 344677777777666544
No 398
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=31.83 E-value=8.4e+02 Score=28.02 Aligned_cols=374 Identities=14% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH-----HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhh
Q 010290 121 DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA-----LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE 195 (513)
Q Consensus 121 ~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~-----~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 195 (513)
+....+-+........++..-|. ...++-.+....+.. ...++.......+.+.+...|-.....+.. -....
T Consensus 188 ~~~~~~~ti~~l~s~~~dv~~r~-ls~l~i~~~~~~~n~~~~s~~v~~lns~~~~~~d~~~f~~rl~~f~~~~e-~~~~~ 265 (1364)
T KOG1823|consen 188 DITSLLTTISSLFSTFDDVLLRV-LTELLIELGRKVPNLLSSSKDVADLNSISSLRLDEYDFPRRLSTFKSLIE-YRSYS 265 (1364)
T ss_pred ccHHHHHHHHHHHhhHHHHHHHH-hHHHHHHHHhccchhHHHHHHHHHHHhhHHHhcCcchHHHHHcchhHHHh-cccch
Q ss_pred hhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhh---------HHHHHHHhcCCCCHHHHHHHHHHHH
Q 010290 196 AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAH---------ILPVIVNFSQDKSWRVRYMVANQLY 266 (513)
Q Consensus 196 ~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~---------l~~~l~~~~~d~~~~vr~~~~~~l~ 266 (513)
.-.....+.+.+...++.++ ..|..+.-.+..+.+....++..+. ..|.+.. .|....++......+.
T Consensus 266 ~~~~~~~l~~f~~~~~~~~e-~~~~~~~~~~~~~i~~~~~~p~~n~~~~~~~k~~~~~~~~~--~~~~e~i~~~~~~~ls 342 (1364)
T KOG1823|consen 266 DLVWLPVLFTFLHFCLDNEE-ALRTHASHAIMAFIETINEKPALNQAEKDMLKKILLPNIRN--KDSLEEIQQEYVHLLS 342 (1364)
T ss_pred hhhhHHHHHHHHHHHcccHH-hhhhhhHHHHHHHHHHHhcCchHhHHHHHHHHHHhhhhcch--hHHHHHHHHhhHHHHH
Q ss_pred HHHHHhCCCccccchHHHHHHhcCCCc---------HHHHHHHHHhHHHHHhhhChHHHHHhhhhhh---hhhcCCCcHH
Q 010290 267 ELCEAVGPEPTRSDVVPAYVRLLRDNE---------AEVRIAAAGKVTKICRILNPELAIQHILPCV---KELSSDSSQH 334 (513)
Q Consensus 267 ~l~~~~~~~~~~~~ll~~l~~~l~d~~---------~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l---~~~~~d~~~~ 334 (513)
.+..............+.+...=...+ ...|..++..|..-....+.......+.|.- .....+...+
T Consensus 343 ~l~~~t~~~t~f~d~~~l~~~~d~e~df~env~~iq~h~~~~~~k~ll~~~vd~~~~s~~~~~~p~s~~~~~~~~~~~~~ 422 (1364)
T KOG1823|consen 343 YLIKNTKYFTAFEDMIILLYYGDEEADFFENVMHIQLHRRKKTIKQLLEHSVDLVINSCSHYLIPMSLSPPFSCGERYQN 422 (1364)
T ss_pred HHhhhhHHHHhhhhHHHHHhcCCcccCHHHHHHHHHHHhhHHHHHHHHhcchHHHhhhhhccccccccCCccccccHHHH
Q ss_pred HHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhh-----------------------
Q 010290 335 VRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI----------------------- 391 (513)
Q Consensus 335 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~----------------------- 391 (513)
+-.+.+..+++++++..-..+...+.++..-+....+.+-...+...+..+.-..-.
T Consensus 423 i~~~l~~~i~~~~k~~swna~~~~l~r~i~~~~~n~~~~k~~v~l~~lv~~~l~~l~~~~~~~~e~~~~l~~~~s~~d~~ 502 (1364)
T KOG1823|consen 423 ILAALTIDIGEIFKHISWNAYEALLKRYISLLKVNENMQKLAVCLIVLVKMALRFLSKQLKDGAESNITLEKFSSSRDEP 502 (1364)
T ss_pred HHHHHHhhHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccchhhhhccccccccccccccccchhh
Q ss_pred -----------hhhhhhHHHHHHHhhcCC---ChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHH----HhcCchhHHH
Q 010290 392 -----------DLLSQSLLPAIVELAEDR---HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ----WLKDKVYSIR 453 (513)
Q Consensus 392 -----------~~~~~~l~~~l~~l~~~~---~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~----~l~d~~~~VR 453 (513)
+.....+.| +...+... ..+-|.....++..+...++.+....+.+|.++. ++.....++|
T Consensus 503 ~~~~~~~~~~l~r~~~di~~-is~~l~~r~~~ti~~~~~~~~~~~~~~~~l~~~~i~~~~L~~illkic~~l~~~s~e~r 581 (1364)
T KOG1823|consen 503 RSFLPENKAELERTTSDILG-ISGFLMKRAFKTIRNRLSIAEALVFLVLFLGNAEIVLRNLPSILLDICYLLRSRSAELR 581 (1364)
T ss_pred hhcchhhhHHHHHHHHHHHh-hhhhhhhhHHHHHHHHHHHHHHHHHHHhcccchHHHHhcCcHHHHHHHHHHhhhhHHHH
Q ss_pred HHHHHHHHHHHHHhChhhHhhhhHHHHHhhhcCc------chHHHHHHHHHHHh
Q 010290 454 DAAANNVKRLAEEFGPDWAMQHIVPQVALIKSSR------NLVLNSVLSLLKNA 501 (513)
Q Consensus 454 ~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~~~------~~~~r~~~~~~~~i 501 (513)
.++-++++++...+|+.+. ..+++.+...+... .|..-+++.+...+
T Consensus 582 d~srktl~~i~k~Lg~~yl-~~Vi~el~~Tl~rg~q~hvl~~tvh~ll~a~~~v 634 (1364)
T KOG1823|consen 582 DASRKTLAKIIKILGPKYL-YFVIKELQTTLKRGFQVHVLSYTVHYLLGAMKNV 634 (1364)
T ss_pred HHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhcc
No 399
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=31.09 E-value=1.6e+02 Score=21.40 Aligned_cols=60 Identities=13% Similarity=0.137 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhH
Q 010290 412 RVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 472 (513)
Q Consensus 412 ~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~ 472 (513)
..|.+++..++.++....-. .+...++..+-+..+| ...|+..+-++++.+.+.-.+.|.
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D~W~ 65 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQDTWH 65 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTSTTHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcccHH
Confidence 45778888888888764332 2334455555555666 667999999999999998877664
No 400
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=30.38 E-value=2.6e+02 Score=21.70 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=28.6
Q ss_pred hhHHHHHHHhh---cCCChhHHHHHHHHHHHHHHHhChhh
Q 010290 396 QSLLPAIVELA---EDRHWRVRLAIIEYIPLLASQLGVGF 432 (513)
Q Consensus 396 ~~l~~~l~~l~---~~~~~~vR~~~~~~l~~l~~~~~~~~ 432 (513)
..++..+..-+ ..++|++...++..+..+....++.+
T Consensus 38 ~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~ 77 (125)
T PF01417_consen 38 QEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERF 77 (125)
T ss_dssp HHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHH
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHH
Confidence 56777777766 56789999999999999998855544
No 401
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=29.28 E-value=7.5e+02 Score=26.78 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=27.7
Q ss_pred hhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhc
Q 010290 319 HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 367 (513)
Q Consensus 319 ~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 367 (513)
.++..+..-....+.++...+++.++.++ +|.....+.++..+...+
T Consensus 229 ~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt--~G~~e~m~~Lv~~F~p~l 275 (802)
T PF13764_consen 229 MLLERLNSPFVRSNPQILQALARILPFLT--YGNEEKMDALVEHFKPYL 275 (802)
T ss_pred HHHHHhcCccccCCHHHHHHHHHHhhHHh--cCCHHHHHHHHHHHHHhc
Confidence 33333333334456788888888888876 455544555555555554
No 402
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=29.17 E-value=4.3e+02 Score=27.94 Aligned_cols=66 Identities=14% Similarity=0.124 Sum_probs=39.0
Q ss_pred HhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhH------HHHHHHhcCCCChHHHHHHHHHHHHh
Q 010290 318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQL------LPIFLSLLKDEFPDVRLNIISKLDQV 385 (513)
Q Consensus 318 ~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l------~~~l~~~l~d~~~~vr~~a~~~l~~i 385 (513)
+.-++.+..++.+.++..+.++++++..+. ++...+...+ +|....++.+.+...+.+++.++..|
T Consensus 583 e~~~~~ie~~~~ee~~~lqraa~e~~~NLl--~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I 654 (748)
T KOG4151|consen 583 EKALGKIEELMTEENPALQRAALESIINLL--WSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAI 654 (748)
T ss_pred HhcchhhHHHhhcccHHHHHHHHHHHHHHH--hhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccch
Confidence 344555666778889999999999987775 2332222222 23344444445555666666666644
No 403
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=29.12 E-value=8.1e+02 Score=27.00 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=39.0
Q ss_pred HHHHHhcCc-cHHHHHHHhhcHHHHHHHhChHh-hhhhhhhhhhh--ccCCchHHHHHHHHHhhcccccc
Q 010290 13 VLIDELKND-DIQLRLNSIRRLSTIARALGEER-TRKELIPFLSE--NNDDDDEVLLAMAEELGVFIPYV 78 (513)
Q Consensus 13 ~l~~~l~~~-d~~~r~~a~~~l~~i~~~~~~~~-~~~~l~~~l~~--~~~~~~~vr~~~~~~l~~~~~~~ 78 (513)
++...|.-+ ....|..-++.+...+++..-++ ....+...+.. ...+..+.|..+...+..++..-
T Consensus 30 e~~rel~~e~P~~~R~rmi~~i~~~~k~~~~~e~aI~~lw~~~~DlI~pN~~Ae~R~~vl~l~kR~v~TQ 99 (1697)
T KOG3687|consen 30 EILRELSMECPLNNRIRMIGQICEVAKTKKFEEHAIEALWKAVADLIQPNRTAEARHAVLALLKRIVQTQ 99 (1697)
T ss_pred HHHhhcCccCcHHHHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhh
Confidence 445555533 44678777888777776644332 22333444333 23456788888888877777643
No 404
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=28.54 E-value=1.9e+02 Score=22.24 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=26.3
Q ss_pred HhHHHHHHHhcCCCChHHHHHHHHHHHHhhhh
Q 010290 357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (513)
Q Consensus 357 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~ 388 (513)
.-.++.+.+.|.|++++|...|++.|...+..
T Consensus 7 ~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~ 38 (115)
T PF14663_consen 7 DWGIELLVTQLYDPSPEVVAAALEILEEACED 38 (115)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 34577888899999999999999988888764
No 405
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.36 E-value=2.6e+02 Score=29.03 Aligned_cols=74 Identities=14% Similarity=0.121 Sum_probs=58.1
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh
Q 010290 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 470 (513)
Q Consensus 396 ~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 470 (513)
..+.+.+-.+.+-.+..++.-++..+...++.++.+.+. +++|.+-.+|.+....=+...++.+-++...+|..
T Consensus 675 ~DiK~sI~s~~kl~D~sV~ADvL~Iltek~eiLtLDl~t-~l~P~lt~LLgS~~e~~v~vsld~Llklv~~fgt~ 748 (825)
T KOG0267|consen 675 SDIKGSIGSLRKLADNSVQADVLNILTEKIEILTLDLCT-QLLPVLTALLGSKTERPVNVSLDMLLKLVAVFGTV 748 (825)
T ss_pred hhhhHHHHHHHHhhhhhHHHHHHHHHhhhhhHhhHHHHH-HHHHHHHHHhcccchhhhhhHHHHHHHHHHHhhhh
Confidence 456666666666667778888888888888777777665 58999999999988888888889988888888863
No 406
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=28.00 E-value=1.4e+02 Score=21.78 Aligned_cols=52 Identities=15% Similarity=0.108 Sum_probs=29.0
Q ss_pred hhhHHhhhHhhcCCCCHH---HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHh
Q 010290 142 RVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATV 194 (513)
Q Consensus 142 R~~~~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~ 194 (513)
|.+++-.+++++..++-+ ..++++..+.....| ...|+..+-+++..+-+.-
T Consensus 6 rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH 60 (90)
T PF11919_consen 6 RHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTH 60 (90)
T ss_dssp HHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhC
Confidence 444555555555444333 455555556655665 4567777778888777654
No 407
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=27.99 E-value=1.3e+02 Score=19.22 Aligned_cols=32 Identities=13% Similarity=0.091 Sum_probs=21.0
Q ss_pred hhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 010290 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELC 269 (513)
Q Consensus 238 ~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~ 269 (513)
+.+.+...+.+....-++..|...+++|.-+-
T Consensus 16 Fp~~L~~lL~~~~~~L~p~lR~~lv~aLiLLR 47 (52)
T PF08158_consen 16 FPQELIDLLRNHHTVLDPDLRMKLVKALILLR 47 (52)
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHHH
Confidence 44455666666556667888888887776553
No 408
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=27.95 E-value=2.3e+02 Score=31.53 Aligned_cols=88 Identities=16% Similarity=0.064 Sum_probs=45.3
Q ss_pred CCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhh----ccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHh
Q 010290 58 DDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLC----TVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRL 133 (513)
Q Consensus 58 ~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~----~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l 133 (513)
-+|.+||..|.+.++.+.. ++ .-..+|-|.+.+ ..+++-||-.--.+ +..-++...+.-++...
T Consensus 901 fPDqeVR~~AVqwi~~ls~----De-L~d~LPQlVQALK~E~yl~S~Lv~FLL~rs-------l~sl~~ah~lYWlLk~~ 968 (1639)
T KOG0905|consen 901 FPDQEVRAHAVQWIARLSN----DE-LLDYLPQLVQALKFELYLKSALVQFLLSRS-------LVSLQFAHELYWLLKDA 968 (1639)
T ss_pred CCcHHHHHHHHHHHHhcCc----HH-HHHHHHHHHHHHHHHHhccCHHHHHHHHHH-------hcchHHHHHHHHHHhhc
Confidence 4678899999988887654 11 122222222222 22344444332222 22334445566667766
Q ss_pred hcCCCcchhhhHHhhhHhhcCCCCHH
Q 010290 134 AAGEWFTARVSSCGLFHVAYPSAPEA 159 (513)
Q Consensus 134 ~~d~~~~~R~~~~~~l~~~~~~~~~~ 159 (513)
..|.....|+ -.+++++...+|+.
T Consensus 969 l~d~qfs~rY--q~ll~aLl~~~gk~ 992 (1639)
T KOG0905|consen 969 LDDSQFSLRY--QNLLAALLDCCGKN 992 (1639)
T ss_pred cccceeehHH--HHHHHHHHHHhCHH
Confidence 6676666776 33444444444444
No 409
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=27.79 E-value=7.8e+02 Score=26.37 Aligned_cols=113 Identities=11% Similarity=-0.006 Sum_probs=63.5
Q ss_pred hhhhhhhhh-ccCCchHHHHHHHHHhhccccc---ccCchhh----hhhhHHHHHh-hccchhHHHHHHHHHHHHHHhhc
Q 010290 47 KELIPFLSE-NNDDDDEVLLAMAEELGVFIPY---VGGLEYA----NVLLPPLETL-CTVEETCVRDKAVESLCRIGSQM 117 (513)
Q Consensus 47 ~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~---~~~~~~~----~~l~~~l~~l-~~~~~~~vR~~a~~~l~~l~~~~ 117 (513)
++++|.+.. +.+++++.|.=|...+..+.+. ...+++. +.+...+..+ -+..++..-..--.++..+.+.+
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i~~~~~~~~~~~~fW~g~~~Il~~l 198 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRISPNNYNPDSVIRFWSGFSLILRLL 198 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHc
Confidence 677888888 7889999999999999988764 2223332 2233333333 12223333333456777777888
Q ss_pred ChHHHHhhHH-----H---HHHHhhcCCCcchhhhHHhhhHhhcCCCCHH
Q 010290 118 REQDVVEHFI-----P---LVKRLAAGEWFTARVSSCGLFHVAYPSAPEA 159 (513)
Q Consensus 118 ~~~~~~~~~~-----~---~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~ 159 (513)
+.+.+...+. | ++.....+.....-....+++..+.+..+.+
T Consensus 199 d~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~~ 248 (727)
T PF12726_consen 199 DKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGSD 248 (727)
T ss_pred cHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHHH
Confidence 8876655432 2 3333333332333344555666555554444
No 410
>PHA02503 putative transcription regulator; Provisional
Probab=27.44 E-value=1.6e+02 Score=18.22 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhChhhHhhhhHHHHHhhhc
Q 010290 453 RDAAANNVKRLAEEFGPDWAMQHIVPQVALIKS 485 (513)
Q Consensus 453 R~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~ 485 (513)
.+.+.+....-.+.+..++..+.++|.|.++.+
T Consensus 15 ~q~sve~yke~l~~~s~~fl~~slipql~ewsn 47 (57)
T PHA02503 15 YQESVEFYKEKLSVYSKDFLQNSLIPQLYEWSN 47 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 333444443333445556666778888877653
No 411
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=26.44 E-value=9.9e+02 Score=27.13 Aligned_cols=69 Identities=16% Similarity=0.045 Sum_probs=42.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhh
Q 010290 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 310 (513)
Q Consensus 242 l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~-~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 310 (513)
+++.....+-..++.+-..+..++.++....+.. ....+++...+-.+.|++.+||..|++.|..+-..
T Consensus 504 Ll~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~R 573 (1120)
T PF14228_consen 504 LLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSEIRSKAMQLLRALEER 573 (1120)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence 4555555554556666655555555544322211 11246777777778899999999999988877654
No 412
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=25.82 E-value=5.5e+02 Score=23.99 Aligned_cols=30 Identities=23% Similarity=0.178 Sum_probs=18.3
Q ss_pred hhHHHHHhhccchhHHHHHHHHHHHHHHhh
Q 010290 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQ 116 (513)
Q Consensus 87 l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~ 116 (513)
++.+|..+.+.-++-.|-.|+.++..+...
T Consensus 150 fleyLgkl~Q~i~~lTrlfav~cl~~l~~~ 179 (432)
T COG5231 150 FLEYLGKLSQLIDFLTRLFAVSCLSNLEFD 179 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344444555555666777788887776543
No 413
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=25.47 E-value=5e+02 Score=23.32 Aligned_cols=46 Identities=20% Similarity=0.158 Sum_probs=26.8
Q ss_pred HHHHHhcCCCc--HHHHHHHHHhHHHHHhhh--ChHHHHHhhhhhhhhhc
Q 010290 283 PAYVRLLRDNE--AEVRIAAAGKVTKICRIL--NPELAIQHILPCVKELS 328 (513)
Q Consensus 283 ~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~--~~~~~~~~l~~~l~~~~ 328 (513)
+.+..++.+++ .-||.+|+.++..+...- .++...+.+...+...+
T Consensus 114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l 163 (249)
T PF06685_consen 114 EPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFL 163 (249)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 44555566554 678999999998887642 23344444444443333
No 414
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=25.37 E-value=8.9e+02 Score=26.24 Aligned_cols=71 Identities=8% Similarity=0.087 Sum_probs=39.6
Q ss_pred HHHHHHHHcC----CCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhh----cc-chhHHHHHHHHHHHhhccCC
Q 010290 164 LRTIYRQLCQ----DDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQ----DD-QDSVRLLAVEGCGALGKLLE 234 (513)
Q Consensus 164 l~~~l~~l~~----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~----d~-~~~vr~~a~~~l~~l~~~~~ 234 (513)
-+..|++.++ ..++.+....++.|+.++ +|.+...+.++..|...++ |. ...--...++++..++..++
T Consensus 226 ~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt--~G~~e~m~~Lv~~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~ 303 (802)
T PF13764_consen 226 QVEMLLERLNSPFVRSNPQILQALARILPFLT--YGNEEKMDALVEHFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIP 303 (802)
T ss_pred HHHHHHHHhcCccccCCHHHHHHHHHHhhHHh--cCCHHHHHHHHHHHHHhcChhhcccccCchHHHHHHHHHHHHhcCC
Confidence 3444444444 346888888888888776 3444555556555555442 11 11111234777777777766
Q ss_pred hh
Q 010290 235 PQ 236 (513)
Q Consensus 235 ~~ 236 (513)
.+
T Consensus 304 ~~ 305 (802)
T PF13764_consen 304 NN 305 (802)
T ss_pred CC
Confidence 53
No 415
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.28 E-value=7.8e+02 Score=25.53 Aligned_cols=65 Identities=26% Similarity=0.335 Sum_probs=38.9
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHH
Q 010290 280 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMG 345 (513)
Q Consensus 280 ~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~ 345 (513)
.+.-+++..+++.-..+-.++...+..+......+ +...++..+..++.|.+-..|.+....-+.
T Consensus 460 iVFtiYFrILkn~~~tll~~vlEGlakf~h~inve-f~~dll~vlk~ll~d~~~~~re~l~cvqta 524 (704)
T KOG2153|consen 460 IVFTIYFRILKNDRYTLLGAVLEGLAKFAHLINVE-FLGDLLKVLKELLEDIELSYREALLCVQTA 524 (704)
T ss_pred HHHHHHHHHHhcchhhHHHHHHhhHHHHhhhccHH-HhhhHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 35566677777765556666666777666554443 345666667777777755555544433333
No 416
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=25.12 E-value=5.8e+02 Score=24.01 Aligned_cols=50 Identities=8% Similarity=-0.013 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHhhccCChhhhhh-----hHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010290 217 SVRLLAVEGCGALGKLLEPQDCVA-----HILPVIVNFSQDKSWRVRYMVANQLY 266 (513)
Q Consensus 217 ~vr~~a~~~l~~l~~~~~~~~~~~-----~l~~~l~~~~~d~~~~vr~~~~~~l~ 266 (513)
.+|...+..+..+....++..... .++..+.+.+..++..+-..+++.+.
T Consensus 129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~ 183 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLK 183 (330)
T ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHH
Confidence 788888888777776655432111 12444444444444444444444433
No 417
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=25.09 E-value=5.8e+02 Score=23.95 Aligned_cols=166 Identities=10% Similarity=0.064 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhH
Q 010290 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHI 242 (513)
Q Consensus 163 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 242 (513)
.++....-+.+.+++. -......+..+....+++...+.+..++.+....++...-...++.|.+
T Consensus 47 ~ii~~c~v~~k~~ekd-le~vlnsi~sLi~~~~~e~~e~~v~a~~ekva~q~n~~~~~l~L~vLsn-------------- 111 (378)
T KOG2753|consen 47 MIIEACDVLAKIPEKD-LECVLNSIVSLIKNAPPEKVEEMVKAICEKVAKQPNDKTASLRLQVLSN-------------- 111 (378)
T ss_pred HHHHHhHHhhcCCcch-HHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHhcCccCCCcccHHHHHHH--------------
Confidence 3444444445555555 2334444555555555555444444444444443333221122222222
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHH--HHHHHHhHHHHHhhhCh-HHHHHh
Q 010290 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV--RIAAAGKVTKICRILNP-ELAIQH 319 (513)
Q Consensus 243 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~v--r~~a~~~l~~~~~~~~~-~~~~~~ 319 (513)
+.+....+.+ +|..+...+-.++..++--.+...=+..+-..+++-+..+ .+.-..++......... +.-.+.
T Consensus 112 ---Lfn~~d~~~~-aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~kv 187 (378)
T KOG2753|consen 112 ---LFNGVDKPTP-ARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDESSKV 187 (378)
T ss_pred ---HHhccCCCch-HHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 2223333344 7777777777777655432222222222233333332222 23334444444443321 112223
Q ss_pred hhhhhhhhcCCCcHHHHHHHHHHHHHhc
Q 010290 320 ILPCVKELSSDSSQHVRSALATVIMGMA 347 (513)
Q Consensus 320 l~~~l~~~~~d~~~~vr~~~~~~l~~l~ 347 (513)
+..++-.+-.|.-..-|..+.+++....
T Consensus 188 mt~lLgtyt~dnas~AredA~rcV~~av 215 (378)
T KOG2753|consen 188 MTELLGTYTEDNASEAREDAMRCVVEAV 215 (378)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 3333333434444666777777765554
No 418
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=24.62 E-value=1.1e+03 Score=26.88 Aligned_cols=69 Identities=22% Similarity=0.204 Sum_probs=41.6
Q ss_pred hhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCH-HHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhh
Q 010290 320 ILPCVKELSSDSSQHVRSALATVIMGMAPILGK-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (513)
Q Consensus 320 l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~ 388 (513)
++......+-..+..+-.....++..+....+. ......++...+-.+.|++.+||..|+..|..+-..
T Consensus 504 Ll~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~R 573 (1120)
T PF14228_consen 504 LLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSEIRSKAMQLLRALEER 573 (1120)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence 333333334445566655544454444321111 112346778888889999999999999998877543
No 419
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.59 E-value=4.6e+02 Score=24.94 Aligned_cols=61 Identities=20% Similarity=0.160 Sum_probs=37.0
Q ss_pred HHHHhhcCCCcchhhhHHhhhHhhcCCC--CHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHH
Q 010290 129 LVKRLAAGEWFTARVSSCGLFHVAYPSA--PEALKTELRTIYRQLCQDDMPMVRRSAATNLGK 189 (513)
Q Consensus 129 ~l~~l~~d~~~~~R~~~~~~l~~~~~~~--~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~ 189 (513)
.+..+.++.+...|..++..++...... +.....++.+.+..++.|.++.+|+.++.+|++
T Consensus 11 ~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~ 73 (364)
T COG5330 11 DLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQ 73 (364)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHh
Confidence 3445556666666666666555433332 333566667777777777777777776666665
No 420
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=23.42 E-value=3.9e+02 Score=21.40 Aligned_cols=66 Identities=6% Similarity=-0.001 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHH-----HHHHHHhhhccchhHHHHHHHHHHHhh
Q 010290 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEI-----MSIFEELTQDDQDSVRLLAVEGCGALG 230 (513)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l-----~~~l~~l~~d~~~~vr~~a~~~l~~l~ 230 (513)
-+.++.|...+..++.....-+ ++.+|..+.+......| +|.+...++++...+-..++-.+..+.
T Consensus 57 l~vLdlFvdsl~e~ne~Lvefg---IgglCNlC~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~ 127 (173)
T KOG4646|consen 57 LDVLDLFVDSLEEQNELLVEFG---IGGLCNLCLDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLE 127 (173)
T ss_pred hhHHHHHHHHhhcccHHHHHHh---HHHHHhhccChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhc
Confidence 4567888888888887666544 44455444332222222 455555667777777666766666554
No 421
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=23.16 E-value=5.6e+02 Score=23.07 Aligned_cols=94 Identities=14% Similarity=0.092 Sum_probs=55.7
Q ss_pred CCcchhhhHHhhhHhhcCCC-CHH----HHH-HHHHHHHHHcCCC---chHHHHHHHHhHHHHHHHhhhh----hhHHHH
Q 010290 137 EWFTARVSSCGLFHVAYPSA-PEA----LKT-ELRTIYRQLCQDD---MPMVRRSAATNLGKFAATVEAA----HLKSEI 203 (513)
Q Consensus 137 ~~~~~R~~~~~~l~~~~~~~-~~~----~~~-~l~~~l~~l~~d~---~~~vr~~a~~~l~~l~~~~~~~----~~~~~l 203 (513)
.....+..+++++.++..+- +.. ... .+++.+....... +..+|.+++..+-.++-..... .....+
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 45666777888888777653 222 223 4555555555544 7889999888888877654332 223335
Q ss_pred HHHHHHhh-hc-cchhHHHHHHHHHHHhh
Q 010290 204 MSIFEELT-QD-DQDSVRLLAVEGCGALG 230 (513)
Q Consensus 204 ~~~l~~l~-~d-~~~~vr~~a~~~l~~l~ 230 (513)
+..+.+.+ .. .++++...++-++|.+.
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 55555522 22 35566666667777666
No 422
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=22.72 E-value=6.3e+02 Score=23.55 Aligned_cols=106 Identities=9% Similarity=0.126 Sum_probs=65.4
Q ss_pred HHHHhcCCCcHHHHHHHHHhHHHHHhhhCh---HHHH---Hhh-hhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHH
Q 010290 284 AYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAI---QHI-LPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI 356 (513)
Q Consensus 284 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~---~~l-~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 356 (513)
.+....+-+..++-.-|++.+..+...-.. +-+. +.. ..+...++.+.++-.|+.+...++.+.-.-......
T Consensus 170 ~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M 249 (342)
T KOG1566|consen 170 KFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVM 249 (342)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHH
Confidence 334445556667766676666665543211 1000 111 223456778888989999999988876433332222
Q ss_pred ------HhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhh
Q 010290 357 ------EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (513)
Q Consensus 357 ------~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~ 389 (513)
..-+..+..+|.|+..+++..|......+....
T Consensus 250 ~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 250 TKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 234567788889999999988888877776543
No 423
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=21.97 E-value=1.6e+02 Score=22.23 Aligned_cols=24 Identities=29% Similarity=0.227 Sum_probs=14.7
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHH
Q 010290 361 PIFLSLLKDEFPDVRLNIISKLDQ 384 (513)
Q Consensus 361 ~~l~~~l~d~~~~vr~~a~~~l~~ 384 (513)
..+..+++++++.||..|+..+-.
T Consensus 50 ~aLl~LL~hpn~~VRl~AA~~~L~ 73 (106)
T PF09450_consen 50 DALLPLLKHPNMQVRLWAAAHTLR 73 (106)
T ss_dssp GGGGGGGGSS-HHHHHHHHHTTTT
T ss_pred HHHHHHHcCCChhHHHHHHHHHHH
Confidence 345567777777887766655443
No 424
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.92 E-value=1.3e+03 Score=27.00 Aligned_cols=224 Identities=12% Similarity=0.109 Sum_probs=114.0
Q ss_pred hhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHh--
Q 010290 48 ELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE-- 124 (513)
Q Consensus 48 ~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~-- 124 (513)
-+.|+-.- -....++||..+.++...-.+ .=|..++.++..-..+.+..+-..+.+....+........+..
T Consensus 1037 fl~Pfe~im~~s~s~~Irelv~rC~~~nik-----SGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~ 1111 (1514)
T KOG0929|consen 1037 FLRPFEHIMKRSSSAEIRELVVRCISSNIK-----SGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEM 1111 (1514)
T ss_pred hcCcchHHhhccCcchhHHHHHhhhhhhhh-----hhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhh
Confidence 34454433 456788899999988872222 2266777777777777777777777777776555543332221
Q ss_pred ----hHHHHHHHhhcCC-CcchhhhHHhhhH----hhcCC-----CC------HH----HHHHHHHHHHHHcCCCchHHH
Q 010290 125 ----HFIPLVKRLAAGE-WFTARVSSCGLFH----VAYPS-----AP------EA----LKTELRTIYRQLCQDDMPMVR 180 (513)
Q Consensus 125 ----~~~~~l~~l~~d~-~~~~R~~~~~~l~----~~~~~-----~~------~~----~~~~l~~~l~~l~~d~~~~vr 180 (513)
..++.+.....+. .+..-..+...+. .+.+. .. .+ ++-.++-.+...+.+....||
T Consensus 1112 ~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr 1191 (1514)
T KOG0929|consen 1112 DSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVR 1191 (1514)
T ss_pred HHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHH
Confidence 1333333333321 1111111221111 11111 11 11 233344444455558889999
Q ss_pred HHHHHhHHHHHHHhhh---hhhHHH----HHHHHHHhhhcc-----chhHHHHHHHHHHHhhccCChh-hhhhhHHHHH-
Q 010290 181 RSAATNLGKFAATVEA---AHLKSE----IMSIFEELTQDD-----QDSVRLLAVEGCGALGKLLEPQ-DCVAHILPVI- 246 (513)
Q Consensus 181 ~~a~~~l~~l~~~~~~---~~~~~~----l~~~l~~l~~d~-----~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l- 246 (513)
..+.+.+-.+....|. ..+++. ++|++..+-.+. ++........++..++..+..- +....++|.+
T Consensus 1192 ~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~lL~~~~ 1271 (1514)
T KOG0929|consen 1192 KRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQLNNLLPKVL 1271 (1514)
T ss_pred HHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888877765 233333 344443332222 1234444555555555433210 0111334433
Q ss_pred ---HHhcCCCCHHHHHHHHHHHHHHHHHhCCCc
Q 010290 247 ---VNFSQDKSWRVRYMVANQLYELCEAVGPEP 276 (513)
Q Consensus 247 ---~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 276 (513)
......++...-.....+|..+....|..+
T Consensus 1272 ~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~f 1304 (1514)
T KOG0929|consen 1272 GLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKF 1304 (1514)
T ss_pred HHHHHHhcCcchhhHHhHHHHHHHHHHhccccc
Confidence 334445555555555667777766655543
No 425
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=21.54 E-value=4.1e+02 Score=23.28 Aligned_cols=74 Identities=14% Similarity=0.188 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhhcChH------HHHhhHHHHHHHhhcC-CCcchhhhHHhhhHhhcCCCCHH-----HHHHHHHHHHHH
Q 010290 104 DKAVESLCRIGSQMREQ------DVVEHFIPLVKRLAAG-EWFTARVSSCGLFHVAYPSAPEA-----LKTELRTIYRQL 171 (513)
Q Consensus 104 ~~a~~~l~~l~~~~~~~------~~~~~~~~~l~~l~~d-~~~~~R~~~~~~l~~~~~~~~~~-----~~~~l~~~l~~l 171 (513)
-.|+..+..++++-... .+.-++.|++....++ +....|.++...++++.++-+++ ...+++|..+..
T Consensus 118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 35666677777653321 2223466777655443 44778999999999999888777 335667777766
Q ss_pred cCCCch
Q 010290 172 CQDDMP 177 (513)
Q Consensus 172 ~~d~~~ 177 (513)
++..+.
T Consensus 198 me~gSE 203 (315)
T COG5209 198 MELGSE 203 (315)
T ss_pred HHhhhH
Confidence 665544
No 426
>PF02194 PXA: PXA domain; InterPro: IPR003114 This domain is found associated with PX domains. The PX (phox) domain [] occurs in a variety of eukaryotic proteins associated with intracellular signalling pathways.
Probab=21.29 E-value=4.9e+02 Score=21.74 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=21.4
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHH
Q 010290 474 QHIVPQVALIKSSRNLVLNSVLSLLKN 500 (513)
Q Consensus 474 ~~i~~~L~~~~~~~~~~~r~~~~~~~~ 500 (513)
..++-.+.+.+.||+|+.+.++..+++
T Consensus 158 ~~VL~p~i~~lsdPd~iN~~ii~~~~~ 184 (185)
T PF02194_consen 158 CQVLLPLIDKLSDPDFINQLIIKLLEK 184 (185)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 456666667899999999999888764
No 427
>PF04761 Phage_Treg: Lactococcus bacteriophage putative transcription regulator; InterPro: IPR006848 This family represents a number of putative transcription repressor proteins found in several Lactococcus bacteriophages. Horizontal transfer may account for the presence of similar proteins in Lactococcus species [].
Probab=20.07 E-value=2.4e+02 Score=17.59 Aligned_cols=32 Identities=13% Similarity=0.122 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhChhhHhhhhHHHHHhhhc
Q 010290 454 DAAANNVKRLAEEFGPDWAMQHIVPQVALIKS 485 (513)
Q Consensus 454 ~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~ 485 (513)
+.+.+....=......+|..+.++|.|.++.+
T Consensus 16 q~sve~yk~kl~~~s~~flq~slipql~ewsn 47 (57)
T PF04761_consen 16 QESVEFYKEKLSVDSKDFLQNSLIPQLYEWSN 47 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33344433333333455566777777766543
Done!