Query 010290
Match_columns 513
No_of_seqs 239 out of 1922
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 03:35:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010290.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010290hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 100.0 4.9E-54 1.7E-58 439.6 51.1 500 3-502 4-508 (588)
2 1b3u_A Protein (protein phosph 100.0 2E-48 6.7E-53 398.1 44.6 490 12-502 90-586 (588)
3 4fdd_A Transportin-1; heat rep 100.0 3.7E-32 1.3E-36 288.6 49.6 499 10-510 129-710 (852)
4 2bpt_A Importin beta-1 subunit 100.0 1.2E-30 4E-35 278.6 48.0 500 10-511 135-723 (861)
5 4fdd_A Transportin-1; heat rep 100.0 1.5E-30 5.1E-35 276.3 47.5 450 19-472 58-564 (852)
6 1u6g_C TIP120 protein, CAND1; 100.0 1.1E-31 3.7E-36 295.9 38.1 491 11-503 50-637 (1230)
7 2bpt_A Importin beta-1 subunit 100.0 9.4E-31 3.2E-35 279.3 43.3 495 13-509 99-678 (861)
8 1u6g_C TIP120 protein, CAND1; 100.0 8.6E-31 2.9E-35 288.7 39.2 491 9-501 6-596 (1230)
9 1qgr_A Protein (importin beta 100.0 5E-30 1.7E-34 274.2 40.1 495 14-511 95-734 (876)
10 1qgr_A Protein (importin beta 100.0 3E-27 1E-31 252.8 50.8 476 10-487 129-746 (876)
11 1ibr_B P95, importin beta-1 su 99.9 9.6E-25 3.3E-29 215.8 31.5 404 49-483 3-459 (462)
12 1ibr_B P95, importin beta-1 su 99.9 6.6E-24 2.3E-28 209.8 32.7 377 11-391 3-441 (462)
13 2vgl_B AP-2 complex subunit be 99.9 1.5E-23 5.2E-28 212.1 35.0 467 10-502 14-492 (591)
14 2jdq_A Importin alpha-1 subuni 99.9 6.5E-23 2.2E-27 202.0 33.3 378 88-465 22-443 (450)
15 2vgl_B AP-2 complex subunit be 99.9 6.9E-22 2.4E-26 199.9 37.5 457 10-492 50-520 (591)
16 2z6g_A B-catenin; FULL-length, 99.9 5.5E-22 1.9E-26 206.5 36.1 490 11-505 117-665 (780)
17 2z6h_A Catenin beta-1, beta-ca 99.9 2.4E-21 8.3E-26 198.7 37.1 479 9-487 14-549 (644)
18 2jdq_A Importin alpha-1 subuni 99.9 1.4E-21 4.9E-26 192.3 32.3 376 127-502 22-442 (450)
19 1wa5_B Importin alpha subunit; 99.9 1.2E-21 4.2E-26 196.5 32.0 382 85-466 86-511 (530)
20 3now_A UNC-45 protein, SD10334 99.9 2.2E-20 7.6E-25 189.5 41.0 478 23-501 218-780 (810)
21 1wa5_B Importin alpha subunit; 99.9 2E-21 6.8E-26 195.0 32.5 378 126-503 88-510 (530)
22 2z6g_A B-catenin; FULL-length, 99.9 1.3E-21 4.3E-26 203.8 31.6 478 11-488 152-686 (780)
23 1jdh_A Beta-catenin; beta-cate 99.9 6E-21 2.1E-25 192.0 35.1 454 48-502 17-529 (529)
24 1jdh_A Beta-catenin; beta-cate 99.9 3.2E-21 1.1E-25 194.0 30.6 454 10-463 18-528 (529)
25 2z6h_A Catenin beta-1, beta-ca 99.9 8.5E-21 2.9E-25 194.7 34.1 461 45-505 11-529 (644)
26 4b8j_A Importin subunit alpha- 99.9 5.9E-21 2E-25 191.7 29.4 380 87-466 75-497 (528)
27 3now_A UNC-45 protein, SD10334 99.9 9.7E-20 3.3E-24 184.9 36.1 448 16-466 254-783 (810)
28 4b8j_A Importin subunit alpha- 99.9 6.9E-20 2.4E-24 183.9 32.0 376 127-502 76-495 (528)
29 1w63_A Adapter-related protein 99.9 9.1E-19 3.1E-23 177.6 31.7 468 11-503 36-540 (618)
30 1w63_A Adapter-related protein 99.8 3E-18 1E-22 173.8 32.5 434 10-465 108-577 (618)
31 3ul1_B Importin subunit alpha- 99.8 1.8E-17 6.1E-22 164.7 32.7 378 88-465 59-478 (510)
32 3tpo_A Importin subunit alpha- 99.8 2.2E-17 7.5E-22 165.0 32.4 379 87-465 77-497 (529)
33 3ul1_B Importin subunit alpha- 99.8 9.9E-18 3.4E-22 166.5 27.3 339 10-348 58-430 (510)
34 3tpo_A Importin subunit alpha- 99.8 2E-17 6.9E-22 165.3 29.1 340 9-348 76-449 (529)
35 1oyz_A Hypothetical protein YI 99.8 4E-18 1.4E-22 156.1 21.9 252 165-461 25-278 (280)
36 1oyz_A Hypothetical protein YI 99.8 6E-18 2.1E-22 154.9 21.0 252 204-500 25-279 (280)
37 2vgl_A Adaptor protein complex 99.8 1.7E-16 5.8E-21 160.3 31.6 459 12-492 38-577 (621)
38 2vgl_A Adaptor protein complex 99.8 4.4E-16 1.5E-20 157.3 34.4 435 11-464 113-588 (621)
39 1wa5_C Importin alpha RE-expor 99.8 5.5E-15 1.9E-19 158.5 41.7 464 21-487 49-653 (960)
40 1wa5_C Importin alpha RE-expor 99.7 2.1E-14 7.2E-19 154.0 38.0 451 14-467 90-672 (960)
41 3ltm_A Alpha-REP4; protein eng 99.7 4.4E-16 1.5E-20 136.0 19.6 190 240-469 18-207 (211)
42 2qk2_A LP04448P; mini spindles 99.7 6.3E-16 2.1E-20 137.9 20.0 188 279-471 14-211 (242)
43 3ltj_A Alpharep-4; protein eng 99.7 7.8E-16 2.7E-20 133.3 19.5 186 239-464 12-197 (201)
44 3ltm_A Alpha-REP4; protein eng 99.7 1.2E-15 4.1E-20 133.2 19.9 185 203-427 20-204 (211)
45 2qk2_A LP04448P; mini spindles 99.7 9.7E-16 3.3E-20 136.7 19.3 195 235-433 9-212 (242)
46 3ltj_A Alpharep-4; protein eng 99.7 1.9E-15 6.3E-20 130.9 20.3 186 200-425 12-197 (201)
47 2x19_B Importin-13; nuclear tr 99.7 2.3E-12 7.8E-17 138.8 43.3 482 21-510 115-725 (963)
48 2x1g_F Cadmus; transport prote 99.7 2.9E-13 9.8E-18 145.8 36.1 484 21-511 97-734 (971)
49 2x1g_F Cadmus; transport prote 99.6 7.1E-13 2.4E-17 142.7 35.8 442 20-468 51-618 (971)
50 3m1i_C Exportin-1; heat repeat 99.6 8.6E-12 2.9E-16 134.9 43.8 445 20-469 60-622 (1049)
51 2x19_B Importin-13; nuclear tr 99.6 3.1E-12 1.1E-16 137.7 38.9 415 46-468 102-602 (963)
52 3m1i_C Exportin-1; heat repeat 99.6 5.6E-12 1.9E-16 136.4 37.8 470 7-486 14-600 (1049)
53 2qk1_A Protein STU2; STU2P, XM 99.6 6.5E-14 2.2E-18 124.3 18.2 200 279-483 15-234 (249)
54 3opb_A SWI5-dependent HO expre 99.6 5.9E-11 2E-15 118.6 39.6 451 11-465 170-728 (778)
55 2qk1_A Protein STU2; STU2P, XM 99.6 1.7E-13 5.8E-18 121.6 19.1 196 206-405 20-234 (249)
56 4hxt_A De novo protein OR329; 99.6 4.3E-13 1.5E-17 120.5 21.9 227 242-469 3-245 (252)
57 4hxt_A De novo protein OR329; 99.6 7.4E-13 2.5E-17 118.9 21.9 189 242-430 45-245 (252)
58 3l6x_A Catenin delta-1; cateni 99.5 9.2E-12 3.1E-16 122.5 30.9 342 85-426 47-476 (584)
59 1xm9_A Plakophilin 1; armadill 99.5 1.1E-12 3.8E-17 128.1 24.5 132 332-463 297-447 (457)
60 1xm9_A Plakophilin 1; armadill 99.5 9.7E-13 3.3E-17 128.5 24.0 146 280-425 283-448 (457)
61 4db8_A Armadillo-repeat protei 99.5 2.2E-13 7.6E-18 122.4 16.9 223 165-387 14-251 (252)
62 4hat_C Exportin-1; heat repeat 99.5 2.5E-10 8.4E-15 121.2 42.6 447 20-471 60-624 (1023)
63 4db8_A Armadillo-repeat protei 99.5 2.9E-13 9.8E-18 121.7 16.2 223 243-465 14-251 (252)
64 3opb_A SWI5-dependent HO expre 99.5 1.6E-10 5.6E-15 115.4 37.0 475 11-492 134-718 (778)
65 3l6x_A Catenin delta-1; cateni 99.5 1.9E-11 6.4E-16 120.3 29.8 341 124-465 47-476 (584)
66 4ady_A RPN2, 26S proteasome re 99.5 2.3E-11 7.9E-16 124.0 28.0 312 140-485 373-698 (963)
67 4hat_C Exportin-1; heat repeat 99.5 1.9E-09 6.3E-14 114.5 43.5 456 23-483 114-696 (1023)
68 3nmz_A APC variant protein; pr 99.5 3.2E-11 1.1E-15 115.9 26.8 305 162-467 69-452 (458)
69 1lrv_A LRV, leucine-rich repea 99.5 1.5E-14 5E-19 126.2 3.0 187 169-461 56-242 (244)
70 3ibv_A Exportin-T; karyopherin 99.5 3.1E-10 1E-14 120.3 36.2 443 22-468 56-631 (980)
71 4ady_A RPN2, 26S proteasome re 99.5 1E-10 3.5E-15 119.3 30.4 303 136-463 406-717 (963)
72 3nmz_A APC variant protein; pr 99.4 8.6E-11 2.9E-15 113.0 27.6 336 165-504 34-451 (458)
73 3ibv_A Exportin-T; karyopherin 99.4 1.1E-10 3.8E-15 123.7 29.3 436 60-504 21-567 (980)
74 4db6_A Armadillo repeat protei 99.4 1.4E-11 4.9E-16 107.1 18.0 186 279-464 11-208 (210)
75 1lrv_A LRV, leucine-rich repea 99.4 2E-13 6.8E-18 119.1 3.8 163 168-421 79-241 (244)
76 2iw3_A Elongation factor 3A; a 99.4 2.7E-10 9.3E-15 117.7 26.9 281 103-390 31-327 (986)
77 4db6_A Armadillo repeat protei 99.3 4.4E-11 1.5E-15 104.0 17.5 186 240-425 11-208 (210)
78 3tjz_B Coatomer subunit gamma; 99.3 9.7E-11 3.3E-15 107.6 16.5 293 153-462 58-350 (355)
79 3gjx_A Exportin-1; transport, 99.3 2E-07 6.9E-12 98.6 42.1 446 21-471 73-650 (1073)
80 2iw3_A Elongation factor 3A; a 99.2 1.1E-08 3.6E-13 106.0 29.6 338 139-486 28-402 (986)
81 3nmw_A APC variant protein; AR 99.2 8.6E-10 2.9E-14 102.8 19.6 216 254-469 97-338 (354)
82 2db0_A 253AA long hypothetical 99.2 1.4E-08 4.7E-13 80.7 22.8 216 200-425 30-245 (253)
83 3oc3_A Helicase MOT1, MOT1; re 99.2 2E-10 6.9E-15 107.5 14.3 257 164-461 175-432 (800)
84 2of3_A ZYG-9; multifunctional 99.2 2.8E-09 9.7E-14 93.2 19.9 178 287-471 53-242 (266)
85 3gjx_A Exportin-1; transport, 99.2 2.6E-07 8.9E-12 97.8 38.4 438 57-505 38-597 (1073)
86 3a6p_A Exportin-5; exportin-5, 99.2 6E-08 2.1E-12 105.6 34.2 470 7-485 9-635 (1204)
87 2of3_A ZYG-9; multifunctional 99.2 3.5E-09 1.2E-13 92.6 19.1 173 136-314 57-241 (266)
88 2db0_A 253AA long hypothetical 99.1 5.6E-08 1.9E-12 77.3 23.5 216 162-387 31-246 (253)
89 3nmw_A APC variant protein; AR 99.1 3.3E-09 1.1E-13 98.8 19.8 214 215-428 97-336 (354)
90 1xqr_A HSPBP1 protein; armadil 99.1 3.8E-09 1.3E-13 95.7 17.3 186 280-466 28-239 (296)
91 4ffb_C Protein STU2; tubulin f 99.1 3.3E-09 1.1E-13 96.2 16.8 183 285-470 14-217 (278)
92 3tjz_B Coatomer subunit gamma; 99.1 6E-09 2E-13 95.8 17.3 307 18-343 34-348 (355)
93 3oc3_A Helicase MOT1, MOT1; re 99.0 6E-09 2E-13 97.8 15.3 242 87-344 175-432 (800)
94 1xqr_A HSPBP1 protein; armadil 99.0 3.6E-08 1.2E-12 89.3 20.2 172 217-388 55-239 (296)
95 3l9t_A Putative uncharacterize 99.0 4.3E-08 1.5E-12 82.6 18.4 139 123-271 69-208 (240)
96 3a6p_A Exportin-5; exportin-5, 99.0 2.4E-06 8E-11 93.2 36.7 422 21-448 108-683 (1204)
97 4ffb_C Protein STU2; tubulin f 99.0 3.2E-08 1.1E-12 89.7 18.6 183 246-431 14-217 (278)
98 3l9t_A Putative uncharacterize 99.0 8E-09 2.7E-13 87.0 13.3 139 200-349 69-208 (240)
99 1te4_A Conserved protein MTH18 99.0 1.3E-10 4.4E-15 92.3 2.0 119 319-462 12-130 (131)
100 1te4_A Conserved protein MTH18 98.9 1.2E-10 4.2E-15 92.4 1.1 121 278-423 10-130 (131)
101 3b2a_A TON_1937, putative unch 98.9 4.6E-07 1.6E-11 75.5 21.9 183 162-348 32-218 (265)
102 3b2a_A TON_1937, putative unch 98.9 1.5E-07 5.2E-12 78.4 18.8 182 86-271 33-219 (265)
103 1vsy_5 Proteasome activator BL 98.6 2.2E-06 7.5E-11 90.2 18.2 405 43-472 503-973 (997)
104 3grl_A General vesicular trans 98.4 0.0022 7.6E-08 62.9 33.3 290 59-348 34-394 (651)
105 1vsy_5 Proteasome activator BL 98.3 3.3E-05 1.1E-09 81.4 18.5 326 154-484 499-892 (997)
106 3u0r_A Apoptosis inhibitor 5; 98.1 0.00085 2.9E-08 62.7 22.8 87 139-230 42-128 (507)
107 4gmo_A Putative uncharacterize 98.1 0.0022 7.5E-08 65.6 28.3 89 46-134 33-128 (684)
108 3u0r_A Apoptosis inhibitor 5; 98.1 0.0015 5.3E-08 61.0 23.7 258 99-367 41-317 (507)
109 3grl_A General vesicular trans 98.1 0.0034 1.2E-07 61.6 26.7 324 160-504 18-395 (651)
110 3tt9_A Plakophilin-2; cell adh 97.9 0.00034 1.2E-08 60.4 15.1 182 321-502 10-228 (233)
111 3tt9_A Plakophilin-2; cell adh 97.8 0.001 3.5E-08 57.4 15.5 185 86-270 8-229 (233)
112 3gs3_A Symplekin, LD45768P; he 97.6 0.032 1.1E-06 48.6 22.6 129 295-426 30-173 (257)
113 3o2t_A Symplekin; heat repeat, 97.5 0.064 2.2E-06 49.6 23.6 111 160-272 60-185 (386)
114 1lsh_A Lipovitellin (LV-1N, LV 97.4 0.014 4.9E-07 62.6 21.6 170 242-427 392-577 (1056)
115 4gmo_A Putative uncharacterize 97.3 0.0012 4.2E-08 67.5 11.8 66 436-501 182-256 (684)
116 1lsh_A Lipovitellin (LV-1N, LV 97.1 0.022 7.7E-07 61.1 18.7 117 331-460 407-538 (1056)
117 3gs3_A Symplekin, LD45768P; he 96.8 0.22 7.4E-06 43.4 25.1 90 217-309 30-119 (257)
118 3o2t_A Symplekin; heat repeat, 96.6 0.47 1.6E-05 43.9 28.8 89 218-309 41-129 (386)
119 1upk_A MO25 protein; transfera 96.4 0.48 1.6E-05 42.4 21.5 126 362-487 168-313 (341)
120 4atg_A TAF6; transcription, TF 95.9 0.18 6.2E-06 41.5 12.8 73 415-487 64-143 (196)
121 4atg_A TAF6; transcription, TF 95.1 0.94 3.2E-05 37.3 14.4 141 335-486 24-179 (196)
122 2b6c_A Hypothetical protein EF 94.8 0.38 1.3E-05 41.0 11.9 131 128-271 58-189 (220)
123 2b6c_A Hypothetical protein EF 94.6 1 3.6E-05 38.2 14.1 131 205-349 58-189 (220)
124 3ldz_A STAM-1, signal transduc 94.2 0.69 2.4E-05 36.0 11.0 75 396-470 41-119 (140)
125 3jxy_A Alkylpurine DNA glycosy 93.8 1.6 5.4E-05 37.4 13.8 130 206-349 65-196 (232)
126 3g2s_A C-terminal fragment of 93.7 1.8 6.2E-05 33.9 12.5 74 396-469 47-130 (149)
127 3jxy_A Alkylpurine DNA glycosy 93.5 1.3 4.4E-05 38.0 12.6 159 129-306 65-224 (232)
128 2npp_B PP2A, B subunit, serine 92.9 5.3 0.00018 37.7 16.5 217 11-231 164-399 (449)
129 1mhq_A ADP-ribosylation factor 91.9 3.7 0.00013 32.1 12.6 75 161-235 36-120 (148)
130 3g2s_A C-terminal fragment of 91.9 3.7 0.00013 32.1 13.1 76 161-236 46-131 (149)
131 1mhq_A ADP-ribosylation factor 91.7 2.9 0.0001 32.7 11.3 74 396-469 37-120 (148)
132 3ldz_A STAM-1, signal transduc 91.4 4 0.00014 31.6 12.5 75 161-235 40-118 (140)
133 1x5b_A Signal transducing adap 91.2 4.9 0.00017 32.1 13.5 75 396-470 51-130 (163)
134 1upk_A MO25 protein; transfera 91.0 8.4 0.00029 34.6 20.6 187 200-388 76-284 (341)
135 1x5b_A Signal transducing adap 91.0 3.8 0.00013 32.7 11.4 74 162-235 51-129 (163)
136 1juq_A ADP-ribosylation factor 90.3 3.8 0.00013 33.0 10.9 74 396-469 49-132 (171)
137 1juq_A ADP-ribosylation factor 90.2 6.3 0.00021 31.7 12.6 75 161-235 48-132 (171)
138 3zyq_A Hepatocyte growth facto 88.8 7.9 0.00027 32.8 12.5 75 396-470 44-123 (226)
139 3zyq_A Hepatocyte growth facto 87.1 11 0.00036 32.0 12.2 75 161-235 43-122 (226)
140 3fga_B Serine/threonine-protei 86.4 21 0.00071 33.1 17.3 174 11-186 131-316 (403)
141 1elk_A Target of MYB1; superhe 85.4 7.5 0.00026 30.7 9.7 70 127-196 55-134 (157)
142 1w9c_A CRM1 protein, exportin 85.3 20 0.00069 32.0 17.9 71 397-468 119-199 (321)
143 2jak_A Serine/threonine-protei 84.1 26 0.00089 32.3 16.4 208 251-460 139-362 (392)
144 2jak_A Serine/threonine-protei 83.7 24 0.00082 32.6 13.4 30 11-40 176-205 (392)
145 1elk_A Target of MYB1; superhe 83.6 15 0.0005 29.0 12.0 74 396-469 52-134 (157)
146 1dvp_A HRS, hepatocyte growth 80.5 11 0.00039 31.7 9.6 73 397-469 42-119 (220)
147 3ut4_A CTHE_2751, putative unc 79.9 18 0.0006 27.5 10.9 84 312-409 25-108 (134)
148 1dvp_A HRS, hepatocyte growth 79.7 25 0.00087 29.5 11.5 73 162-234 41-118 (220)
149 3ut4_A CTHE_2751, putative unc 78.7 19 0.00066 27.3 9.7 87 154-253 22-108 (134)
150 2npp_B PP2A, B subunit, serine 78.4 46 0.0016 31.4 19.8 229 252-484 128-374 (449)
151 2fv2_A RCD1 required for cell 76.6 19 0.00066 30.9 9.5 87 105-191 75-173 (268)
152 1sz9_A PCF11 protein; RNA poly 76.1 25 0.00086 27.2 9.8 72 395-466 41-115 (144)
153 1vdy_A Hypothetical protein (R 72.8 12 0.0004 28.8 6.7 69 403-472 17-85 (140)
154 1w9c_A CRM1 protein, exportin 72.7 53 0.0018 29.4 17.3 60 136-195 133-199 (321)
155 3bwt_A Protein PUF4; pumilio, 70.3 62 0.0021 29.1 13.5 11 440-450 274-284 (333)
156 1t06_A Hypothetical protein; s 68.5 54 0.0019 27.8 11.1 126 206-349 52-181 (235)
157 3fga_B Serine/threonine-protei 67.2 80 0.0027 29.3 20.7 208 251-460 94-317 (403)
158 3dad_A FH1/FH2 domain-containi 66.9 73 0.0025 28.7 17.4 110 360-469 162-290 (339)
159 1vdy_A Hypothetical protein (R 66.4 33 0.0011 26.3 8.0 64 130-193 16-79 (140)
160 3dad_A FH1/FH2 domain-containi 62.6 88 0.003 28.1 15.6 145 90-235 123-290 (339)
161 1t06_A Hypothetical protein; s 61.0 38 0.0013 28.8 8.4 69 203-271 109-181 (235)
162 3k49_A MRNA-binding protein PU 60.5 1E+02 0.0035 28.2 13.8 16 144-159 41-56 (369)
163 1vsy_4 Proteasome activator BL 58.7 1.7E+02 0.0058 30.2 23.8 113 160-272 336-457 (799)
164 3rru_A TOM1L1 protein; structu 58.6 63 0.0021 25.2 8.5 70 11-80 55-134 (152)
165 4flb_A Regulation of nuclear P 56.3 62 0.0021 24.4 11.4 115 360-484 10-128 (132)
166 1vsy_4 Proteasome activator BL 54.0 2E+02 0.0069 29.6 25.8 112 198-309 335-455 (799)
167 3gvo_A Pumilio 2, pumilio homo 53.7 1.3E+02 0.0044 27.3 16.0 13 474-486 317-329 (351)
168 3rru_A TOM1L1 protein; structu 53.0 79 0.0027 24.6 9.3 75 161-235 51-134 (152)
169 2fv2_A RCD1 required for cell 51.5 1.2E+02 0.004 26.1 12.7 22 444-465 203-224 (268)
170 4f52_E Glomulin; cullin-ring E 50.2 1.3E+02 0.0043 29.8 11.1 35 358-392 317-351 (596)
171 3gvo_A Pumilio 2, pumilio homo 47.0 1.6E+02 0.0056 26.5 14.7 15 105-119 36-50 (351)
172 4fu3_A Regulation of nuclear P 44.0 1E+02 0.0035 23.2 8.8 58 364-428 13-70 (135)
173 3bwt_A Protein PUF4; pumilio, 41.6 1.9E+02 0.0066 25.8 15.1 25 474-498 285-310 (333)
174 1ho8_A Vacuolar ATP synthase s 35.6 3E+02 0.01 26.2 18.3 155 107-271 273-477 (480)
175 2qsb_A UPF0147 protein TA0600; 34.1 1.1E+02 0.0039 21.0 7.6 65 436-500 14-87 (89)
176 3s4w_B Protein FACD2, fanconi 31.7 5.5E+02 0.019 28.2 28.5 148 279-428 399-551 (1323)
177 2nsz_A Programmed cell death p 27.1 2E+02 0.0067 21.5 8.7 111 395-512 7-129 (129)
178 4flb_A Regulation of nuclear P 24.4 2.2E+02 0.0076 21.2 7.4 59 285-350 13-71 (132)
179 3d9j_A RNA-binding protein 16; 24.2 2.4E+02 0.0083 21.6 9.5 89 396-487 41-138 (145)
180 3k49_A MRNA-binding protein PU 23.5 4.2E+02 0.014 24.0 14.0 11 474-484 334-344 (369)
181 3s4w_B Protein FACD2, fanconi 23.1 7.8E+02 0.027 27.1 27.8 104 396-501 399-505 (1323)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=4.9e-54 Score=439.56 Aligned_cols=500 Identities=60% Similarity=0.972 Sum_probs=464.4
Q ss_pred CCCCCCCcHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhhccCCchHHHHHHHHHhhcccccccCch
Q 010290 3 MIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLE 82 (513)
Q Consensus 3 ~~~~~~~~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~ 82 (513)
+.+|++++|..+++.|+++|+..|..|++.+..++..+|++..+++++|++.+..|+++++|..++..++.+...+++..
T Consensus 4 ~~~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~ 83 (588)
T 1b3u_A 4 DGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE 83 (588)
T ss_dssp CTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGG
T ss_pred ccCCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHH
Confidence 45788999999999999999999999999999999999999889999999988558889999999999999999888877
Q ss_pred hhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHH
Q 010290 83 YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKT 162 (513)
Q Consensus 83 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~ 162 (513)
+...+++.+..+..++++.||..|..+++.++..++++.+...++|.+..+..++++..|..++.+++.++...+...++
T Consensus 84 ~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~ 163 (588)
T 1b3u_A 84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA 163 (588)
T ss_dssp GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHH
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 88899999999989999999999999999999999998888899999999999999999999999999999999988889
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhH
Q 010290 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHI 242 (513)
Q Consensus 163 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 242 (513)
.+++.+..+++|+++.||..++++++.++...+++...+.++|.+..+++|+++.+|..|+.+++.++..++++...+.+
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 243 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV 243 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999887778889999999999999999999999999999999887777889
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH----HHHH
Q 010290 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQ 318 (513)
Q Consensus 243 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~ 318 (513)
+|.+..+++|++|.+|.+++.+++.++..++.+.+.+.++|.+..+++|+++.||.+|+.+++.++..++.+ .+.+
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 323 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence 999999999999999999999999999988776656789999999999999999999999999999988765 5678
Q ss_pred hhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhH
Q 010290 319 HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (513)
Q Consensus 319 ~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l 398 (513)
.++|.+..+++|++|.+|.+++.+++.+++.+|.+...+.++|.+..+++|+++.||.+++.+++.++..+|.+...+.+
T Consensus 324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 403 (588)
T 1b3u_A 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL 403 (588)
T ss_dssp THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 89999999999999999999999999999999988777889999999999999999999999999999988877777889
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHH
Q 010290 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP 478 (513)
Q Consensus 399 ~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~ 478 (513)
+|.+..+++|++|++|..++.+++.++..+|.+++.+.++|.+..++.|+++.||..|+.+++.+...+|+++..+.++|
T Consensus 404 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp 483 (588)
T 1b3u_A 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 483 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 99999999999999999999999999999998887788999999999999999999999999999999999887889999
Q ss_pred HHHhhhcCcchHHH-HHHHHHHHhc
Q 010290 479 QVALIKSSRNLVLN-SVLSLLKNAG 502 (513)
Q Consensus 479 ~L~~~~~~~~~~~r-~~~~~~~~i~ 502 (513)
.|..+.++++|..| .++.+++.++
T Consensus 484 ~l~~~~~~~~~~~R~~a~~~l~~l~ 508 (588)
T 1b3u_A 484 KVLAMSGDPNYLHRMTTLFCINVLS 508 (588)
T ss_dssp HHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 99999999999888 5566666654
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=2e-48 Score=398.09 Aligned_cols=490 Identities=18% Similarity=0.256 Sum_probs=443.8
Q ss_pred HHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhhHH
Q 010290 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPP 90 (513)
Q Consensus 12 ~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~ 90 (513)
..+...+.++++.+|..|...+..++...+++..++.++|.+.+ ..++++.+|..++..++.++...+. ...+.++|.
T Consensus 90 ~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~-~~~~~l~~~ 168 (588)
T 1b3u_A 90 PPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS-AVKAELRQY 168 (588)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH-HHHHHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHH
Confidence 33444456788999999999999999888887778889999988 6778899999999999998887653 456788999
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH-HHHHHHHHHH
Q 010290 91 LETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA-LKTELRTIYR 169 (513)
Q Consensus 91 l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~-~~~~l~~~l~ 169 (513)
+..++.|+++.||..++.+++.++...+.+.....++|.+..+.+|+++.+|..++..++.++...+++ ..+.+++.+.
T Consensus 169 l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 248 (588)
T 1b3u_A 169 FRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 248 (588)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999887777889999999999999999999999999999888876 5677899999
Q ss_pred HHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChh----hhhhhHHHH
Q 010290 170 QLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ----DCVAHILPV 245 (513)
Q Consensus 170 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~ 245 (513)
.+++|++|.||..++++++.++...+++...+.++|.+.++++|+++.||..++.+++.++..++++ .+.+.++|.
T Consensus 249 ~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~ 328 (588)
T 1b3u_A 249 QAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPC 328 (588)
T ss_dssp HHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHH
T ss_pred HHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHH
Confidence 9999999999999999999999998887777889999999999999999999999999999998875 557789999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhh
Q 010290 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVK 325 (513)
Q Consensus 246 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~ 325 (513)
+..+++|++|.||.+++.+++.++..+|.+...+.++|.+..+++|++++||.+++.+++.+....+.+...+.++|.+.
T Consensus 329 l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~ 408 (588)
T 1b3u_A 329 IKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIV 408 (588)
T ss_dssp HHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999998887665577999999999999999999999999999999888777788999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHh
Q 010290 326 ELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 405 (513)
Q Consensus 326 ~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l 405 (513)
.++.|++|++|..++.+++.++..+|.+.+.+.++|.+.++++|+++.||..++.+++.++..+|.++..+.++|.+..+
T Consensus 409 ~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~ 488 (588)
T 1b3u_A 409 ELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAM 488 (588)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHT
T ss_pred HHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 99999999999999999999999999877667899999999999999999999999999999999887778999999999
Q ss_pred hcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhhc
Q 010290 406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKS 485 (513)
Q Consensus 406 ~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~ 485 (513)
..+++|.+|..++.+++.++..++.+.+.+.++|.+.+++.|++++||..++++++.+...+|.++..+.++|.|..+.+
T Consensus 489 ~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~ 568 (588)
T 1b3u_A 489 SGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQ 568 (588)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTT
T ss_pred hhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcC
Confidence 99999999999999999999999988888899999999999999999999999999999999988777889999999999
Q ss_pred CcchHHH-HHHHHHHHhc
Q 010290 486 SRNLVLN-SVLSLLKNAG 502 (513)
Q Consensus 486 ~~~~~~r-~~~~~~~~i~ 502 (513)
|++.-.| .+..+++.+.
T Consensus 569 d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 569 DQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp CSSHHHHHHHHHHHHHTT
T ss_pred CCchhHHHHHHHHHHHhh
Confidence 9988777 5667777664
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=3.7e-32 Score=288.61 Aligned_cols=499 Identities=15% Similarity=0.147 Sum_probs=391.0
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhh-------hhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCc
Q 010290 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERT-------RKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGL 81 (513)
Q Consensus 10 ~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~-------~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~ 81 (513)
.+..+++.+.++++..|..|+..+..+....++... ...++|.+.+ +.++++++|..++.+++.+....+..
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~ 208 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA 208 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH
Confidence 477788899999999999999999999888765422 4567888888 78899999999999999888654321
Q ss_pred --hhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChH--HHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCC
Q 010290 82 --EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ--DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAP 157 (513)
Q Consensus 82 --~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~ 157 (513)
.....+++.+..+++|+++.||..++.++..+++..+.. .....+++.+.....|+++.+|..++..+..+++...
T Consensus 209 ~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~ 288 (852)
T 4fdd_A 209 LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPI 288 (852)
T ss_dssp HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh
Confidence 234467777777888999999999999999999875432 1123467777788888899999999999988876432
Q ss_pred H-----HHHHHHHHHHHHHc-----------CC-----------CchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHh
Q 010290 158 E-----ALKTELRTIYRQLC-----------QD-----------DMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEEL 210 (513)
Q Consensus 158 ~-----~~~~~l~~~l~~l~-----------~d-----------~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l 210 (513)
. .+...+++.+...+ .| .+|.+|+.++.+++.++...|+ ...+.++|.+.+.
T Consensus 289 ~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~-~~~~~l~~~l~~~ 367 (852)
T 4fdd_A 289 CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD-ELLPHILPLLKEL 367 (852)
T ss_dssp HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 1 15567888888776 44 5688999999999999998884 5677899999999
Q ss_pred hhccchhHHHHHHHHHHHhhccCChh--hhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHH
Q 010290 211 TQDDQDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAY 285 (513)
Q Consensus 211 ~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~ll~~l 285 (513)
++|+++.+|..|+.+++.+++..++. .+.+.++|.+...++|+++.||.+++.+++.++...+. ..+...+++.+
T Consensus 368 l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L 447 (852)
T 4fdd_A 368 LFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTEL 447 (852)
T ss_dssp HTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999999999999999876542 34567899999999999999999999999999987653 33456789999
Q ss_pred HHhcCCCcHHHHHHHHHhHHHHHhhhChH--HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHH----HHHHhH
Q 010290 286 VRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD----ATIEQL 359 (513)
Q Consensus 286 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l 359 (513)
...++|+++.||..|+.+++.+++..+.. .+.+.+++.+...+++.+......+..+++.++...|.. .+.+.+
T Consensus 448 ~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l 527 (852)
T 4fdd_A 448 LKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQML 527 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHH
Confidence 99999999999999999999999877654 355677777777777666677777888888888766643 356778
Q ss_pred HHHHH---HhcCCCChHHHHHHHHHHHHhhhhhhhhh--hhhhHHHHHHHhhc-----------------CCChhHHHHH
Q 010290 360 LPIFL---SLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAE-----------------DRHWRVRLAI 417 (513)
Q Consensus 360 ~~~l~---~~l~d~~~~vr~~a~~~l~~i~~~~~~~~--~~~~l~~~l~~l~~-----------------~~~~~vR~~~ 417 (513)
+|.+. ..+.|.++.+| .++++++.++..+|... +.+.+++.+...+. .++..+|..+
T Consensus 528 ~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~ 606 (852)
T 4fdd_A 528 MPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVA 606 (852)
T ss_dssp HHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHH
T ss_pred HHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHH
Confidence 88877 45678888886 78999999999888643 23344443333321 2356789999
Q ss_pred HHHHHHHHHHhChhhHH----HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHh--hhhHHHHHhhhcCcchHH
Q 010290 418 IEYIPLLASQLGVGFFD----DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM--QHIVPQVALIKSSRNLVL 491 (513)
Q Consensus 418 ~~~l~~l~~~~~~~~~~----~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~--~~i~~~L~~~~~~~~~~~ 491 (513)
+.+++.++..+|.++.. ..+++.++.++.|+++.||+.+..+++.++..++..+.. ..++|.+.+.++++++..
T Consensus 607 l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v 686 (852)
T 4fdd_A 607 LDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISV 686 (852)
T ss_dssp HHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHH
T ss_pred HHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHH
Confidence 99999999999865421 357999999999999999999999999999998876542 678899988887777765
Q ss_pred H-HHHHHHH----Hhcccceeehh
Q 010290 492 N-SVLSLLK----NAGIDAVFYME 510 (513)
Q Consensus 492 r-~~~~~~~----~i~~~~~~~~~ 510 (513)
| .++.+++ .+|.++.||++
T Consensus 687 ~~~a~~alg~i~~~~~~~~~p~~~ 710 (852)
T 4fdd_A 687 CNNATWAIGEISIQMGIEMQPYIP 710 (852)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGTH
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHH
Confidence 5 4554444 45667788865
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.2e-30 Score=278.57 Aligned_cols=500 Identities=16% Similarity=0.190 Sum_probs=393.6
Q ss_pred cHHHHHHHhcCc-cHHHHHHHhhcHHHHHHHhChH-----hhhhhhhhhhhh-ccCC--chHHHHHHHHHhhcccccccC
Q 010290 10 PIAVLIDELKND-DIQLRLNSIRRLSTIARALGEE-----RTRKELIPFLSE-NNDD--DDEVLLAMAEELGVFIPYVGG 80 (513)
Q Consensus 10 ~i~~l~~~l~~~-d~~~r~~a~~~l~~i~~~~~~~-----~~~~~l~~~l~~-~~~~--~~~vr~~~~~~l~~~~~~~~~ 80 (513)
.+..+++.+.++ |+..|..|+..+..+...++++ .....+++.+.+ +.++ +++||..+.++++.+...++.
T Consensus 135 ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~ 214 (861)
T 2bpt_A 135 LMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKN 214 (861)
T ss_dssp HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 366788888888 9999999999999998877653 345677787777 6666 789999999999987654432
Q ss_pred c----hhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChH---HHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhc
Q 010290 81 L----EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ---DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAY 153 (513)
Q Consensus 81 ~----~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~ 153 (513)
. ..+..+++.+...+.++++.+|..+++++..++...+.. .+...+++.+.....|.+..+|..++..+..++
T Consensus 215 ~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~ 294 (861)
T 2bpt_A 215 NMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTIC 294 (861)
T ss_dssp HHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 1 123567888888888999999999999999999876542 122156677777778888999999999888776
Q ss_pred CCCC--------------------HHHHHHHHHHHHHHcCC-------CchHHHHHHHHhHHHHHHHhhhhhhHHHHHHH
Q 010290 154 PSAP--------------------EALKTELRTIYRQLCQD-------DMPMVRRSAATNLGKFAATVEAAHLKSEIMSI 206 (513)
Q Consensus 154 ~~~~--------------------~~~~~~l~~~l~~l~~d-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 206 (513)
+... ..+...+++.+...+.+ .+|.+|..+..+++.++..++ +...+.++|.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~ 373 (861)
T 2bpt_A 295 EEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-NHILEPVLEF 373 (861)
T ss_dssp HHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-GGGHHHHHHH
T ss_pred HHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-HhHHHHHHHH
Confidence 5421 12446788888877753 458999999999999999888 4556789999
Q ss_pred HHHhhhccchhHHHHHHHHHHHhhccCChh---hhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC----Ccccc
Q 010290 207 FEELTQDDQDSVRLLAVEGCGALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRS 279 (513)
Q Consensus 207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~ 279 (513)
+.+.+++++|.+|..++.+++.+++..+++ ...+.++|.+...+.|+++.||.+++.+++.++..++. ..+.+
T Consensus 374 l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 453 (861)
T 2bpt_A 374 VEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLP 453 (861)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHH
T ss_pred HHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHH
Confidence 999999999999999999999999877633 23456888899999999999999999999999988764 33457
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhCh---H---HHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHHhchhhC
Q 010290 280 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---E---LAIQHILPCVKELSS--DSSQHVRSALATVIMGMAPILG 351 (513)
Q Consensus 280 ~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~---~~~~~l~~~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~ 351 (513)
.++|.+...++|+ +.||..|+.++..+++.++. + .+.+.+++.+...+. |.++.+|..++.+++.++...+
T Consensus 454 ~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~ 532 (861)
T 2bpt_A 454 GVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYAT 532 (861)
T ss_dssp HHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcc
Confidence 8899999999987 89999999999999987651 2 345677777777776 4558999999999999998887
Q ss_pred HHH--HHHhHHHHHHHhcCC---------------CChHHHHHHHHHHHHhhhhhhhh--hhhhhHHHHHHHhhcCCCh-
Q 010290 352 KDA--TIEQLLPIFLSLLKD---------------EFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHW- 411 (513)
Q Consensus 352 ~~~--~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~l~~i~~~~~~~--~~~~~l~~~l~~l~~~~~~- 411 (513)
... +...++|.+.+.+.+ ....+|..++.+++.++..+|.. .+.+.+++.+...+++.++
T Consensus 533 ~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 612 (861)
T 2bpt_A 533 DTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSA 612 (861)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGG
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCC
Confidence 653 235667777766642 24578999999999999988764 2456788888888888877
Q ss_pred hHHHHHHHHHHHHHHHhChhh--HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhH--hhhhHHHHHhhhcCc
Q 010290 412 RVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVALIKSSR 487 (513)
Q Consensus 412 ~vR~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~--~~~i~~~L~~~~~~~ 487 (513)
.+|..++.+++.++...+..+ +.+.++|.+...++++++.+|..++.+++.+++..|..+. ...++|.+.+.+.++
T Consensus 613 ~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 692 (861)
T 2bpt_A 613 FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNP 692 (861)
T ss_dssp GTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCc
Confidence 899999999999999887754 4567999999999999999999999999999999987643 367888888877765
Q ss_pred c--hHHH-HHHHHH----HHhcccceeehhc
Q 010290 488 N--LVLN-SVLSLL----KNAGIDAVFYMET 511 (513)
Q Consensus 488 ~--~~~r-~~~~~~----~~i~~~~~~~~~~ 511 (513)
+ .-.| .++.++ ...|.++.||+++
T Consensus 693 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~ 723 (861)
T 2bpt_A 693 NARRELKPAVLSVFGDIASNIGADFIPYLND 723 (861)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred cccHhhhHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3 4444 444444 5556677777753
No 5
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.5e-30 Score=276.31 Aligned_cols=450 Identities=18% Similarity=0.124 Sum_probs=355.6
Q ss_pred cCccHHHHHHHhhcHHHHHH----HhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhhHHHHH
Q 010290 19 KNDDIQLRLNSIRRLSTIAR----ALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLET 93 (513)
Q Consensus 19 ~~~d~~~r~~a~~~l~~i~~----~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~ 93 (513)
.+.++.+|..|.-.|..... .+ ++..+..+.+.+.+ +.++++.+|..++.+++.+++.. ....|+.+++.+..
T Consensus 58 ~~~~~~vR~~a~~~Lkn~i~~~w~~~-~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~-~~~~wp~ll~~L~~ 135 (852)
T 4fdd_A 58 KSEDEPTRSLSGLILKNNVKAHFQNF-PNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKG-ELQNWPDLLPKLCS 135 (852)
T ss_dssp TTSCHHHHHHHHHHHHHHTTTSGGGC-CHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHT-TTTTCTTHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc-CccccHHHHHHHHH
Confidence 44555556555544443321 11 12234455555555 67888999999999999998865 34678899999999
Q ss_pred hhccchhHHHHHHHHHHHHHHhhcChHHH-------HhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH---HHHH
Q 010290 94 LCTVEETCVRDKAVESLCRIGSQMREQDV-------VEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA---LKTE 163 (513)
Q Consensus 94 l~~~~~~~vR~~a~~~l~~l~~~~~~~~~-------~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~---~~~~ 163 (513)
.++++++.+|..++.+++.+++..+.... ...++|.+.+..+++++.+|..++.++..++...+.. ....
T Consensus 136 ~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~ 215 (852)
T 4fdd_A 136 LLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDS 215 (852)
T ss_dssp HHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 99999999999999999999988765422 3457788888888999999999999999888766654 4567
Q ss_pred HHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhh--hhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCh----hh
Q 010290 164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----QD 237 (513)
Q Consensus 164 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~ 237 (513)
+++.+..+++|+++.||+.++++++.+++..+.. .....+++.+.+.+.|.++.||..|++.+..+++.... ..
T Consensus 216 ~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~ 295 (852)
T 4fdd_A 216 FIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVR 295 (852)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 8899999999999999999999999999876542 23557889999999999999999999999998864221 12
Q ss_pred hhhhHHHHHHHhc-----------CC-----------CCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHH
Q 010290 238 CVAHILPVIVNFS-----------QD-----------KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE 295 (513)
Q Consensus 238 ~~~~l~~~l~~~~-----------~d-----------~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~ 295 (513)
....++|.+...+ .| .+|.+|.+++.+++.++...|+. ..+.++|.+...++++++.
T Consensus 296 ~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~-~~~~l~~~l~~~l~~~~~~ 374 (852)
T 4fdd_A 296 HLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE-LLPHILPLLKELLFHHEWV 374 (852)
T ss_dssp THHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHhcCCCHH
Confidence 3445777777665 34 57889999999999999988853 3567899999999999999
Q ss_pred HHHHHHHhHHHHHhhhChH--HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCH---HHHHHhHHHHHHHhcCCC
Q 010290 296 VRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDE 370 (513)
Q Consensus 296 vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~ 370 (513)
+|.+|+.+++.+.+..+.. .+.+.++|.+...++|+++.||.+++.+++.++...+. ..+...+++.+.+.++|+
T Consensus 375 ~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~ 454 (852)
T 4fdd_A 375 VKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS 454 (852)
T ss_dssp HHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC
Confidence 9999999999998865432 34577889999999999999999999999999987654 233467889999999999
Q ss_pred ChHHHHHHHHHHHHhhhhhhhh--hhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhh----HHHHHHHHHHH-
Q 010290 371 FPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQ- 443 (513)
Q Consensus 371 ~~~vr~~a~~~l~~i~~~~~~~--~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~----~~~~~~~~l~~- 443 (513)
++.||.+++.+++.+++..+.. .+.+.+++.+...+++.+......++.+++.++...|... +.+.++|.+++
T Consensus 455 ~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~ 534 (852)
T 4fdd_A 455 NKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQK 534 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHH
Confidence 9999999999999999877654 2446788888888877777777778899999987766543 66778888884
Q ss_pred --HhcCchhHHHHHHHHHHHHHHHHhChhhH
Q 010290 444 --WLKDKVYSIRDAAANNVKRLAEEFGPDWA 472 (513)
Q Consensus 444 --~l~d~~~~VR~~a~~~l~~l~~~~~~~~~ 472 (513)
.+.|..+.+| .++++++.++..+|..+.
T Consensus 535 ~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~ 564 (852)
T 4fdd_A 535 WNMLKDEDKDLF-PLLECLSSVATALQSGFL 564 (852)
T ss_dssp HHHSCTTCTTHH-HHHHHHHHHHHHHGGGGH
T ss_pred HHhcccccHHHH-HHHHHHHHHHHHHhHhHH
Confidence 5678888886 799999999999998654
No 6
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.1e-31 Score=295.92 Aligned_cols=491 Identities=12% Similarity=0.146 Sum_probs=387.1
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCc--------
Q 010290 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGL-------- 81 (513)
Q Consensus 11 i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~-------- 81 (513)
+..+++.|.++++.+|..|+..+..++..+++ ....++++.+.+ +.|+++.+|..++.+++.++..++..
T Consensus 50 l~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~ 128 (1230)
T 1u6g_C 50 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA 128 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHH
Confidence 56688889999999999999999999887765 567788888888 78899999999999999999877654
Q ss_pred hhhhhhhHHHHHhhc-cchhHHHHHHHHHHHHHHhhcChH--HHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCH
Q 010290 82 EYANVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMREQ--DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE 158 (513)
Q Consensus 82 ~~~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~ 158 (513)
.+++.++|.+...+. ++++.+|..|+.++..++...+.. .....+++.+.....+++..+|..++.+++.++...++
T Consensus 129 ~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~ 208 (1230)
T 1u6g_C 129 NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN 208 (1230)
T ss_dssp HHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH
Confidence 368899999988877 488899999999999998765431 12345677777777888899999999999999988877
Q ss_pred HHHHHHHHHHHHHcCCC-chHHHHHHHHhHHHHHHHhhhh--hhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCh
Q 010290 159 ALKTELRTIYRQLCQDD-MPMVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 235 (513)
Q Consensus 159 ~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (513)
.....+++.+...+.+. ++.+|..++++++.++...|.. .+.+.++|.+.+.+.|+++++|..++.+++.++..++.
T Consensus 209 ~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 209 IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK 288 (1230)
T ss_dssp --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH
Confidence 65555566666555433 4578999999999999887752 23467899999999999999999999999999998775
Q ss_pred h--hhhhhHHHHHHHhcC-------------------------------------CCCHHHHHHHHHHHHHHHHHhCC--
Q 010290 236 Q--DCVAHILPVIVNFSQ-------------------------------------DKSWRVRYMVANQLYELCEAVGP-- 274 (513)
Q Consensus 236 ~--~~~~~l~~~l~~~~~-------------------------------------d~~~~vr~~~~~~l~~l~~~~~~-- 274 (513)
+ .+.+.++|.+.+.+. |..|.+|.+++.+++.++...+.
T Consensus 289 ~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~ 368 (1230)
T 1u6g_C 289 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML 368 (1230)
T ss_dssp CCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHH
Confidence 3 355667777755432 22588999999999999986554
Q ss_pred CccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhCh---------------------HHHHHhhhhhhhhhcCCCcH
Q 010290 275 EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---------------------ELAIQHILPCVKELSSDSSQ 333 (513)
Q Consensus 275 ~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---------------------~~~~~~l~~~l~~~~~d~~~ 333 (513)
..+...++|.+...+.|.++.||.+++.+++.++...+. +.+.+.++|.+...++|++|
T Consensus 369 ~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~ 448 (1230)
T 1u6g_C 369 PEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV 448 (1230)
T ss_dssp HHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCH
Confidence 234567889999999999999999999999998876542 23345566666677899999
Q ss_pred HHHHHHHHHHHHhchhhCHH--HHHHhHHHHHHHhcCCCCh--HHHHHHHHHHHHhhhhhhhhh---hhhhHHHHHHHhh
Q 010290 334 HVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDEFP--DVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVELA 406 (513)
Q Consensus 334 ~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~i~~~~~~~~---~~~~l~~~l~~l~ 406 (513)
++|.+++.+++.++...+.. ...+.++|.+.+.++|+.+ .+|..++..++.+.+..|.+. +.+.++|.+...+
T Consensus 449 ~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l 528 (1230)
T 1u6g_C 449 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV 528 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH
Confidence 99999999999998775432 2357789999999999875 899999999999988777653 4468899999999
Q ss_pred cCCChhHHHHHHHHHHHHHHHhCh---------hhHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHHhChhhH--h
Q 010290 407 EDRHWRVRLAIIEYIPLLASQLGV---------GFFDDKLGALCMQWL--KDKVYSIRDAAANNVKRLAEEFGPDWA--M 473 (513)
Q Consensus 407 ~~~~~~vR~~~~~~l~~l~~~~~~---------~~~~~~~~~~l~~~l--~d~~~~VR~~a~~~l~~l~~~~~~~~~--~ 473 (513)
+|+++++|..++.+++.+++.++. ..+.+.++|.++..+ .|.+++||..|+.+++.++...|+.+. .
T Consensus 529 ~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~ 608 (1230)
T 1u6g_C 529 GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDL 608 (1230)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHH
T ss_pred cccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhH
Confidence 999999999999999999988876 235677999999999 889999999999999999999987653 2
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHhcc
Q 010290 474 QHIVPQVALIKSSRNLVLNSVLSLLKNAGI 503 (513)
Q Consensus 474 ~~i~~~L~~~~~~~~~~~r~~~~~~~~i~~ 503 (513)
..++|.|.+.+.++. .+..++++++.++.
T Consensus 609 ~~~l~~L~~~l~~e~-~r~~~~~al~~i~~ 637 (1230)
T 1u6g_C 609 PNTLQIFLERLKNEI-TRLTTVKALTLIAG 637 (1230)
T ss_dssp HHHHHHHHHHTTSSS-HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccch-hHHHHHHHHHHHHh
Confidence 667777766665432 23355666666654
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=9.4e-31 Score=279.28 Aligned_cols=495 Identities=12% Similarity=0.098 Sum_probs=388.7
Q ss_pred HHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCC-chHHHHHHHHHhhcccccccC-----chhhh
Q 010290 13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD-DDEVLLAMAEELGVFIPYVGG-----LEYAN 85 (513)
Q Consensus 13 ~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~-~~~vr~~~~~~l~~~~~~~~~-----~~~~~ 85 (513)
.+++.|.++++.+|..+...+..++....|...|++++|.+.+ +.++ ++.+|..+...++.+++..+. ..+..
T Consensus 99 ~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~ 178 (861)
T 2bpt_A 99 NALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSN 178 (861)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHH
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHH
Confidence 4677888999999999999999999887776578999999999 7777 899999999999988875543 23566
Q ss_pred hhhHHHHHhhccc--hhHHHHHHHHHHHHHHhhcCh----HHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH
Q 010290 86 VLLPPLETLCTVE--ETCVRDKAVESLCRIGSQMRE----QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA 159 (513)
Q Consensus 86 ~l~~~l~~l~~~~--~~~vR~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~ 159 (513)
.+++.+...+.++ +..||..++++++.+...+.. +.....+++.+.....++++.+|..++.++..+....+..
T Consensus 179 ~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~ 258 (861)
T 2bpt_A 179 NILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF 258 (861)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7788887777777 789999999999998665432 2223567888888888899999999999999887655443
Q ss_pred ---HHH-HHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh-------------------hhhHHHHHHHHHHhhhc---
Q 010290 160 ---LKT-ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-------------------AHLKSEIMSIFEELTQD--- 213 (513)
Q Consensus 160 ---~~~-~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-------------------~~~~~~l~~~l~~l~~d--- 213 (513)
+.. .+++.+...+.|.+..||..+++.+..++..... ......++|.+...+.+
T Consensus 259 ~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~ 338 (861)
T 2bpt_A 259 MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNE 338 (861)
T ss_dssp CHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 444 7888888899999999999999999988876421 12335678887777653
Q ss_pred ----cchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC---ccccchHHHHH
Q 010290 214 ----DQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRSDVVPAYV 286 (513)
Q Consensus 214 ----~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~ll~~l~ 286 (513)
+++.+|..+..++..++..++. ...+.++|.+.+.+++.+|.+|.+++.+++.++...+.+ .+.+.++|.+.
T Consensus 339 d~~d~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~ 417 (861)
T 2bpt_A 339 DPEDDDWNVSMSAGACLQLFAQNCGN-HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSIL 417 (861)
T ss_dssp C-CCCCCHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccCcHHHHHHHHHHHHHHHccH-hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3468999999999999988874 456779999999999999999999999999998544311 12356889999
Q ss_pred HhcCCCcHHHHHHHHHhHHHHHhhhCh----HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCH---H---HHH
Q 010290 287 RLLRDNEAEVRIAAAGKVTKICRILNP----ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---D---ATI 356 (513)
Q Consensus 287 ~~l~d~~~~vr~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~---~~~ 356 (513)
..++|+++.||.+++.+++.++..++. ..+.+.++|.+...+.|+ +++|..++.++..+++.++. . .+.
T Consensus 418 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~ 496 (861)
T 2bpt_A 418 NLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY 496 (861)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 999999999999999999999987654 345678888888888876 99999999999999987751 1 234
Q ss_pred HhHHHHHHHhcCC--CChHHHHHHHHHHHHhhhhhhhhh--hhhhHHHHHHHhhcC---------------CChhHHHHH
Q 010290 357 EQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAED---------------RHWRVRLAI 417 (513)
Q Consensus 357 ~~l~~~l~~~l~d--~~~~vr~~a~~~l~~i~~~~~~~~--~~~~l~~~l~~l~~~---------------~~~~vR~~~ 417 (513)
+.+++.+.+.+++ .++.||..++.+++.++...+.+. +...++|.+.+.+.+ ....+|..+
T Consensus 497 ~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 576 (861)
T 2bpt_A 497 PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNI 576 (861)
T ss_dssp HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHH
Confidence 6778888888874 448999999999999998877542 234566666555432 245688999
Q ss_pred HHHHHHHHHHhChh--hHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHHHHhChhhH--hhhhHHHHHhhhcCcchHHH
Q 010290 418 IEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVY-SIRDAAANNVKRLAEEFGPDWA--MQHIVPQVALIKSSRNLVLN 492 (513)
Q Consensus 418 ~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~~~-~VR~~a~~~l~~l~~~~~~~~~--~~~i~~~L~~~~~~~~~~~r 492 (513)
+.+++.++..+|.. .+.+.++|.+...+++... .||..++.+++.++...|.++. .+.++|.|...++++++..|
T Consensus 577 ~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr 656 (861)
T 2bpt_A 577 LTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVS 656 (861)
T ss_dssp HHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHH
Confidence 99999999988774 3456799999999988877 9999999999999999988765 47899999998887776555
Q ss_pred -HHHHHHH----Hhcccceeeh
Q 010290 493 -SVLSLLK----NAGIDAVFYM 509 (513)
Q Consensus 493 -~~~~~~~----~i~~~~~~~~ 509 (513)
.++.+++ ..|.++.||+
T Consensus 657 ~~a~~~l~~l~~~~~~~~~~~~ 678 (861)
T 2bpt_A 657 ITAVGFIADISNSLEEDFRRYS 678 (861)
T ss_dssp HHHHHHHHHHHHHTGGGGHHHH
T ss_pred HHHHHHHHHHHHHhchhccchH
Confidence 4444443 3344444444
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=8.6e-31 Score=288.74 Aligned_cols=491 Identities=12% Similarity=0.153 Sum_probs=386.1
Q ss_pred CcHHHHHHHhcCccHHHHHHHhhcHHHHHHHhC---hHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhh
Q 010290 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALG---EERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYA 84 (513)
Q Consensus 9 ~~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~---~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~ 84 (513)
..+..+++.+.+.|++.|.+|...|.+....-. .+...+++++.+.+ +.|.++.+|..++.+++.++..++. ...
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~ 84 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV 84 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH
Confidence 458889999999999999999888876532110 11234567777777 7789999999999999999986654 566
Q ss_pred hhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChH--------HHHhhHHHHHHHhhc-CCCcchhhhHHhhhHhhcCC
Q 010290 85 NVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ--------DVVEHFIPLVKRLAA-GEWFTARVSSCGLFHVAYPS 155 (513)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~--------~~~~~~~~~l~~l~~-d~~~~~R~~~~~~l~~~~~~ 155 (513)
..+++.+...+.|+++.+|..+..+++.++..++++ .....++|.+..... ++++.+|..++.++..+++.
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 778888877778899999999999999999988765 245678998888887 47889999999999988755
Q ss_pred CCHH---HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhhc
Q 010290 156 APEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGK 231 (513)
Q Consensus 156 ~~~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~ 231 (513)
.+.. +.+.+++.+...+.|+++.||..++.+++.++...+.+. .+.++|.+.+.+.+. ++.+|..++++++.++.
T Consensus 165 ~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~ 243 (1230)
T 1u6g_C 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISR 243 (1230)
T ss_dssp TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHH
Confidence 4442 678899999999999999999999999999998776543 445566666555443 35789999999999998
Q ss_pred cCChh--hhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCC----------------
Q 010290 232 LLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRD---------------- 291 (513)
Q Consensus 232 ~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~d---------------- 291 (513)
..+.. .+...++|.+...++|+++.+|..++.+++.++..++... +.+.++|.+++.+.+
T Consensus 244 ~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~ 323 (1230)
T 1u6g_C 244 QAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAM 323 (1230)
T ss_dssp HSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------------
T ss_pred HhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccc
Confidence 87752 3346799999999999999999999999999999887654 345677777666531
Q ss_pred ---------------------CcHHHHHHHHHhHHHHHhhhCh--HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhch
Q 010290 292 ---------------------NEAEVRIAAAGKVTKICRILNP--ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 348 (513)
Q Consensus 292 ---------------------~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 348 (513)
..+.||.+|+.+++.+....+. ..+.+.++|.+...+.|++..+|.+++.++..+..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 403 (1230)
T 1u6g_C 324 DADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLK 403 (1230)
T ss_dssp ---------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHH
T ss_pred cccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 1246899999999999986653 45667888888888899999999999999988887
Q ss_pred hhCH---------------------HHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhh--hhhhhHHHHHHHh
Q 010290 349 ILGK---------------------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVEL 405 (513)
Q Consensus 349 ~~~~---------------------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~l~~~l~~l 405 (513)
..+. ....+.++|.+.+.++|+++.+|.+++.+++.++...+.. ...+.++|.+...
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~ 483 (1230)
T 1u6g_C 404 QTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFS 483 (1230)
T ss_dssp HHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHH
T ss_pred HhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHH
Confidence 6542 1233567788888899999999999999999998875421 2347889999999
Q ss_pred hcCCCh--hHHHHHHHHHHHHHHHhChhh---HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh-------h--h
Q 010290 406 AEDRHW--RVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP-------D--W 471 (513)
Q Consensus 406 ~~~~~~--~vR~~~~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~-------~--~ 471 (513)
+.|+++ .+|..++..++.+....+++. +.+.++|.++..+.|+++.||..++.+++.+++.+|+ . -
T Consensus 484 L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 563 (1230)
T 1u6g_C 484 LNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATP 563 (1230)
T ss_dssp TTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHH
T ss_pred HcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHH
Confidence 999876 899999999999988777764 3446899999999999999999999999999999886 2 1
Q ss_pred HhhhhHHHHHhhh--cCcchHHH-HHHHHHHHh
Q 010290 472 AMQHIVPQVALIK--SSRNLVLN-SVLSLLKNA 501 (513)
Q Consensus 472 ~~~~i~~~L~~~~--~~~~~~~r-~~~~~~~~i 501 (513)
..+.++|.+...+ .|.++..| .++++++.+
T Consensus 564 ~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L 596 (1230)
T 1u6g_C 564 YIKDLFTCTIKRLKAADIDQEVKERAISCMGQI 596 (1230)
T ss_dssp HHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 2478899988877 66677666 445555544
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=5e-30 Score=274.20 Aligned_cols=495 Identities=17% Similarity=0.166 Sum_probs=335.9
Q ss_pred HHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCC--chHHHHHHHHHhhcccccccC---chhhhhh
Q 010290 14 LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD--DDEVLLAMAEELGVFIPYVGG---LEYANVL 87 (513)
Q Consensus 14 l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~--~~~vr~~~~~~l~~~~~~~~~---~~~~~~l 87 (513)
+++.|.++++.. ..+...+..++...++...+++++|.+.+ +.++ ++.+|..+..+++.++...++ ..+...+
T Consensus 95 ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~l 173 (876)
T 1qgr_A 95 VLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEI 173 (876)
T ss_dssp HHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH
T ss_pred HHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHH
Confidence 666677777777 77788888888776666668888888888 6666 788888888888877765432 2345566
Q ss_pred hHHHHHhhccc--hhHHHHHHHHHHHHHHhhcChH----HHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH--
Q 010290 88 LPPLETLCTVE--ETCVRDKAVESLCRIGSQMREQ----DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA-- 159 (513)
Q Consensus 88 ~~~l~~l~~~~--~~~vR~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~-- 159 (513)
++.+...+.++ +..+|..+++++..++..++.. .....+++.+.....++++.+|..++.++..++...++.
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 253 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME 253 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCH
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 67676666665 5778888888888877654321 122346777777777777888888888888776654433
Q ss_pred -HHH-HHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh--------------------h---hhHHHHHHHHHHhhh--
Q 010290 160 -LKT-ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--------------------A---HLKSEIMSIFEELTQ-- 212 (513)
Q Consensus 160 -~~~-~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--------------------~---~~~~~l~~~l~~l~~-- 212 (513)
+.. .+++.+...+.+.+..||..+++.+..+++.... . .....++|.+.+.+.
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~ 333 (876)
T 1qgr_A 254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ 333 (876)
T ss_dssp HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcc
Confidence 334 6777777777777788888888777777654210 0 012455666655553
Q ss_pred -----ccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC---ccccchHHH
Q 010290 213 -----DDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRSDVVPA 284 (513)
Q Consensus 213 -----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~ll~~ 284 (513)
|+++.+|..+..+++.++..+++ ...+.++|.+...+.|++|.+|.+++.+++.++...+.+ .+...++|.
T Consensus 334 ~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~ 412 (876)
T 1qgr_A 334 DENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT 412 (876)
T ss_dssp CSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHHHCcH-hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34567888888888888777663 345667777777777888888888888888776544311 123457777
Q ss_pred HHHhcCCCcHHHHHHHHHhHHHHHhhhCh----HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhC---------
Q 010290 285 YVRLLRDNEAEVRIAAAGKVTKICRILNP----ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--------- 351 (513)
Q Consensus 285 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--------- 351 (513)
+...++|+++.||..|+.+++.+++..+. ..+.+.+++.+...+.|+ +++|..++.++..++..++
T Consensus 413 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~ 491 (876)
T 1qgr_A 413 LIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQ 491 (876)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 77778888888888888888888776543 234566677777777664 7778888888777776543
Q ss_pred -------HHHHHHhHHHHHHHhcCCC---ChHHH----------------------------------------------
Q 010290 352 -------KDATIEQLLPIFLSLLKDE---FPDVR---------------------------------------------- 375 (513)
Q Consensus 352 -------~~~~~~~l~~~l~~~l~d~---~~~vr---------------------------------------------- 375 (513)
-..+.+.++|.+.+.+.+. ...+|
T Consensus 492 ~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 571 (876)
T 1qgr_A 492 EEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQST 571 (876)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCST
T ss_pred ccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 0123355666666666543 23344
Q ss_pred ----------HHHHHHHHHhhhhhh-hh--hhhhhHHHHHHHhhcCCC--hhHHHHHHHHHHHHHHHhChhh--HHHHHH
Q 010290 376 ----------LNIISKLDQVNQVIG-ID--LLSQSLLPAIVELAEDRH--WRVRLAIIEYIPLLASQLGVGF--FDDKLG 438 (513)
Q Consensus 376 ----------~~a~~~l~~i~~~~~-~~--~~~~~l~~~l~~l~~~~~--~~vR~~~~~~l~~l~~~~~~~~--~~~~~~ 438 (513)
..++.+++.++..+| .. .+.+.++|.+...+++.+ +.+|..++.+++.++...+..+ +...++
T Consensus 572 ~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 651 (876)
T 1qgr_A 572 SDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFK 651 (876)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444555555555444 22 133567777777777664 5899999999999998877643 446789
Q ss_pred HHHHHHhcCc-hhHHHHHHHHHHHHHHHHhChhhH--hhhhHHHHHhhhcCc--ch-HHHHHHHH----HHHhcccceee
Q 010290 439 ALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVALIKSSR--NL-VLNSVLSL----LKNAGIDAVFY 508 (513)
Q Consensus 439 ~~l~~~l~d~-~~~VR~~a~~~l~~l~~~~~~~~~--~~~i~~~L~~~~~~~--~~-~~r~~~~~----~~~i~~~~~~~ 508 (513)
|.+...+.+. ++.||..++++++.++...|+.+. .+.+++.|.+.++++ +. +...++.+ +..+|.++.+|
T Consensus 652 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~ 731 (876)
T 1qgr_A 652 PFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKY 731 (876)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGG
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHH
Confidence 9999999987 899999999999999999987654 378888888877662 22 33344444 44556788888
Q ss_pred hhc
Q 010290 509 MET 511 (513)
Q Consensus 509 ~~~ 511 (513)
++.
T Consensus 732 l~~ 734 (876)
T 1qgr_A 732 LEV 734 (876)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.97 E-value=3e-27 Score=252.75 Aligned_cols=476 Identities=14% Similarity=0.178 Sum_probs=356.7
Q ss_pred cHHHHHHHhcCc--cHHHHHHHhhcHHHHHHHhChH---hhhhhhhhhhhh-ccCC--chHHHHHHHHHhhcccccccCc
Q 010290 10 PIAVLIDELKND--DIQLRLNSIRRLSTIARALGEE---RTRKELIPFLSE-NNDD--DDEVLLAMAEELGVFIPYVGGL 81 (513)
Q Consensus 10 ~i~~l~~~l~~~--d~~~r~~a~~~l~~i~~~~~~~---~~~~~l~~~l~~-~~~~--~~~vr~~~~~~l~~~~~~~~~~ 81 (513)
.++.+++.+.++ ++..|..|++.+..+....+++ .....+++.+.+ +.++ ++.+|..+..+++.++..++..
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~ 208 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN 208 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888 9999999999999998876553 334566777777 6665 6899999999999887655421
Q ss_pred ----hhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcCh---HHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcC
Q 010290 82 ----EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE---QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYP 154 (513)
Q Consensus 82 ----~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~ 154 (513)
.....+++.+...+.++++.+|..+++++..++...++ +.+...+++.+.....+++..+|..++..+..+++
T Consensus 209 ~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~ 288 (876)
T 1qgr_A 209 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (876)
T ss_dssp HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 11134677777777888899999999999999987654 22222567777777778888899998887776653
Q ss_pred CC----------------------CH--HHHHHHHHHHHHHcC-------CCchHHHHHHHHhHHHHHHHhhhhhhHHHH
Q 010290 155 SA----------------------PE--ALKTELRTIYRQLCQ-------DDMPMVRRSAATNLGKFAATVEAAHLKSEI 203 (513)
Q Consensus 155 ~~----------------------~~--~~~~~l~~~l~~l~~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 203 (513)
.. .. .....+++.+.+.+. |.+|.+|+++..+++.++..++. ...+.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~ 367 (876)
T 1qgr_A 289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHV 367 (876)
T ss_dssp HHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHH
T ss_pred HHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-hhHHHH
Confidence 21 00 123567777777764 45789999999999999998884 556788
Q ss_pred HHHHHHhhhccchhHHHHHHHHHHHhhccCChh---hhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC----Cc
Q 010290 204 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EP 276 (513)
Q Consensus 204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----~~ 276 (513)
+|.+...+.|+++.+|..++.+++.++...+++ .+.+.++|.+...++|+++.||..++.+++.++..++. ..
T Consensus 368 l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 447 (876)
T 1qgr_A 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDV 447 (876)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTT
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHH
Confidence 899888999999999999999999999887743 34566888899999999999999999999999988654 23
Q ss_pred cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhC----------------hHHHHHhhhhhhhhhcCCC---cHH---
Q 010290 277 TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN----------------PELAIQHILPCVKELSSDS---SQH--- 334 (513)
Q Consensus 277 ~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~----------------~~~~~~~l~~~l~~~~~d~---~~~--- 334 (513)
+.+.+++.+...++|+ +.||..|+.+++.++...+ -..+.+.++|.+...+.+. ++.
T Consensus 448 ~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~ 526 (876)
T 1qgr_A 448 YLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRS 526 (876)
T ss_dssp THHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHH
Confidence 4567888899999886 8899999999999887653 1134456666665555432 123
Q ss_pred -----------------------------------------------------HHHHHHHHHHHhchhhC-HHH--HHHh
Q 010290 335 -----------------------------------------------------VRSALATVIMGMAPILG-KDA--TIEQ 358 (513)
Q Consensus 335 -----------------------------------------------------vr~~~~~~l~~l~~~~~-~~~--~~~~ 358 (513)
+|..++.+++.++..+| ... +.+.
T Consensus 527 ~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 606 (876)
T 1qgr_A 527 SAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDV 606 (876)
T ss_dssp HHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHH
T ss_pred HHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHH
Confidence 34455556666666555 322 2356
Q ss_pred HHHHHHHhcCCCC--hHHHHHHHHHHHHhhhhhhhhh--hhhhHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHhChhh-
Q 010290 359 LLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF- 432 (513)
Q Consensus 359 l~~~l~~~l~d~~--~~vr~~a~~~l~~i~~~~~~~~--~~~~l~~~l~~l~~~~-~~~vR~~~~~~l~~l~~~~~~~~- 432 (513)
++|.+.+.+++.. ..+|..++.+++.++...|... +.+.++|.+...+.+. ++.+|..++.+++.++..++...
T Consensus 607 l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 686 (876)
T 1qgr_A 607 VMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNII 686 (876)
T ss_dssp HHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7888888888764 4799999999999998776542 3467888888888887 89999999999999999887643
Q ss_pred -HHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHHhChhhH--hhhhHHHHHhhhcCc
Q 010290 433 -FDDKLGALCMQWLKD--KVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVALIKSSR 487 (513)
Q Consensus 433 -~~~~~~~~l~~~l~d--~~~~VR~~a~~~l~~l~~~~~~~~~--~~~i~~~L~~~~~~~ 487 (513)
+.+.+++.++..+.+ .+..+|..++.+++.++..+|+++. ...++|.|...++++
T Consensus 687 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~ 746 (876)
T 1qgr_A 687 PFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQ 746 (876)
T ss_dssp HHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCC
T ss_pred hhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhcc
Confidence 346788999998876 4678999999999999999998753 366777777766543
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.94 E-value=9.6e-25 Score=215.84 Aligned_cols=404 Identities=16% Similarity=0.118 Sum_probs=227.0
Q ss_pred hhhhhhhccCCchHHHHHHHHHhhcccccccCchhhhhhhHHHHH-hhcc-chhHHHHHHHHHHHHHHhhcChHHHHhhH
Q 010290 49 LIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLET-LCTV-EETCVRDKAVESLCRIGSQMREQDVVEHF 126 (513)
Q Consensus 49 l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~-l~~~-~~~~vR~~a~~~l~~l~~~~~~~~~~~~~ 126 (513)
+...+..+.+++.++|+.|...|..+... + .+...+.+.. +.+. .++.+|..|+..|..+.+.-.......
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~----~-~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~-- 75 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVE----N-LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ-- 75 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHH--
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhh----C-hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHH--
Confidence 33444456677888888888888774431 1 1222333322 2222 367788888888887764321100000
Q ss_pred HHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHH
Q 010290 127 IPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSI 206 (513)
Q Consensus 127 ~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 206 (513)
+...+..++++.+..+.+.+...+.++++.+ ..++.+++.++...+++..++.++|.
T Consensus 76 ----------------------~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~ 132 (462)
T 1ibr_B 76 ----------------------YQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQ 132 (462)
T ss_dssp ----------------------HHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHH
T ss_pred ----------------------HHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHH
Confidence 0001122333334444444444444444444 55555555555444332234445555
Q ss_pred HHHhhhcc--chhHHHHHHHHHHHhhccCCh---hhhhhhHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhCC----C
Q 010290 207 FEELTQDD--QDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP----E 275 (513)
Q Consensus 207 l~~l~~d~--~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~----~ 275 (513)
+...+.++ ++.+|..++.+++.+++.+.. ....+.+++.+...++|+ ++.||..++++++.+...++. .
T Consensus 133 L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~ 212 (462)
T 1ibr_B 133 LVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE 212 (462)
T ss_dssp HHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 55555444 445555555555555543321 112233444455555444 455555555555443221110 0
Q ss_pred ccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH--HHHH-hhhhhhhhhcCCCcHHHHHHHHHHHHHhchhh--
Q 010290 276 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQ-HILPCVKELSSDSSQHVRSALATVIMGMAPIL-- 350 (513)
Q Consensus 276 ~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~-~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-- 350 (513)
.....+++.+...+.+.++.+|..+++++..+....+.. .+.. .+++.+...+.+.+..+|..++..+..++...
T Consensus 213 ~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~ 292 (462)
T 1ibr_B 213 SERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD 292 (462)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence 001123444444445555555555555555555443211 1122 34444444444555555555555554444321
Q ss_pred ------------------CH---HHHHHhHHHHHHHhcCC-------CChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHH
Q 010290 351 ------------------GK---DATIEQLLPIFLSLLKD-------EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI 402 (513)
Q Consensus 351 ------------------~~---~~~~~~l~~~l~~~l~d-------~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l 402 (513)
.. ......++|.+.+.+.+ +++.+|.+++.+|+.++..+| +...+.++|.+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l 371 (462)
T 1ibr_B 293 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFI 371 (462)
T ss_dssp HHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHH
T ss_pred HHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHH
Confidence 00 01235677888777743 356899999999999999988 45558899999
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHHhChhh---HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh----Hhhh
Q 010290 403 VELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW----AMQH 475 (513)
Q Consensus 403 ~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~----~~~~ 475 (513)
...+++++|.+|.+++.+++.++..++.+. ....++|.+...+.|+++.||..|+++++.++..+++.. ..+.
T Consensus 372 ~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ 451 (462)
T 1ibr_B 372 KEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAP 451 (462)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH
Confidence 999999999999999999999998655332 235689999999999999999999999999999988743 1244
Q ss_pred hHHHHHhh
Q 010290 476 IVPQVALI 483 (513)
Q Consensus 476 i~~~L~~~ 483 (513)
++|.|...
T Consensus 452 ll~~Ll~~ 459 (462)
T 1ibr_B 452 LLQCLIEG 459 (462)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHH
Confidence 55555443
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.94 E-value=6.6e-24 Score=209.79 Aligned_cols=377 Identities=13% Similarity=0.065 Sum_probs=229.1
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhhccCCchHHHHHHHHHhhccccccc-----------
Q 010290 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVG----------- 79 (513)
Q Consensus 11 i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~----------- 79 (513)
|..++..+.++|..+|..|.+.|..+...- ...+...|+..+.. .+.++.+|..++..|.++.+..-
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~-~~~~~~~L~~il~~-~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~ 80 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN-LPTFLVELSRVLAN-PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHhccccchHHHHHHHhhh
Confidence 567788888999999999999998764321 12233344444332 23478999999999998765310
Q ss_pred ---CchhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCC--CcchhhhHHhhhHhhcC
Q 010290 80 ---GLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGE--WFTARVSSCGLFHVAYP 154 (513)
Q Consensus 80 ---~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~--~~~~R~~~~~~l~~~~~ 154 (513)
+++....+...+...+.++++.+ ..+..+++.++....++.....++|.+.....++ ++.+|..++.+++.+++
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 81 LAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (462)
T ss_dssp HTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 11122233444444455666666 7777777777766433323455677777666666 67777777777777765
Q ss_pred CCC----HHHHHHHHHHHHHHcCCC--chHHHHHHHHhHHHHHHHhhh----hhhHHHHHHHHHHhhhccchhHHHHHHH
Q 010290 155 SAP----EALKTELRTIYRQLCQDD--MPMVRRSAATNLGKFAATVEA----AHLKSEIMSIFEELTQDDQDSVRLLAVE 224 (513)
Q Consensus 155 ~~~----~~~~~~l~~~l~~l~~d~--~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~d~~~~vr~~a~~ 224 (513)
... ..+.+.+++.+...++|+ ++.||..++++++.+...++. ......+++.+.....++++.+|..+++
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~ 239 (462)
T 1ibr_B 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239 (462)
T ss_dssp HSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred hCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 442 225566777777777776 677787777777765543321 1123445666666667777777777777
Q ss_pred HHHHhhccCChh--hhhh-hHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh-------C-----------C--Cc---cc
Q 010290 225 GCGALGKLLEPQ--DCVA-HILPVIVNFSQDKSWRVRYMVANQLYELCEAV-------G-----------P--EP---TR 278 (513)
Q Consensus 225 ~l~~l~~~~~~~--~~~~-~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-------~-----------~--~~---~~ 278 (513)
++..++...++. .+.. .+++.+...+.|.++.+|..+++.+..++... + . .. +.
T Consensus 240 ~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (462)
T 1ibr_B 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL 319 (462)
T ss_dssp HHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh
Confidence 777777655431 2344 56666666667777777777777777766542 0 0 00 01
Q ss_pred cchHHHHHHhcCC-------CcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhC
Q 010290 279 SDVVPAYVRLLRD-------NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG 351 (513)
Q Consensus 279 ~~ll~~l~~~l~d-------~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~ 351 (513)
..++|.+++.+.+ .++.+|.+|..+++.++..++ +...+.++|.+...+++++|++|.+++.+++.++...+
T Consensus 320 ~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~ 398 (462)
T 1ibr_B 320 QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE 398 (462)
T ss_dssp HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc
Confidence 3455555555532 234566666666666666655 34445566666666666666666666666666665433
Q ss_pred HH---HHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhh
Q 010290 352 KD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 391 (513)
Q Consensus 352 ~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~ 391 (513)
.+ ...+.++|.+.+.++|+++.||.+|+.+++.+++.++.
T Consensus 399 ~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 399 PSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp TTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 11 11244566666666666666666666666666655543
No 13
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.94 E-value=1.5e-23 Score=212.07 Aligned_cols=467 Identities=14% Similarity=0.107 Sum_probs=310.9
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhh
Q 010290 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLL 88 (513)
Q Consensus 10 ~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~ 88 (513)
.+..+.+.|+++|...|..+++.+... ...|.+ ...+.+.+.+ +.++++++|+.+...+..+++. .++....+.
T Consensus 14 e~~~i~~~L~~~~~~~k~~~~~kli~~-~~~G~d--~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~e~~~l~~ 88 (591)
T 2vgl_B 14 EIFELKAELNNEKKEKRKEAVKKVIAA-MTVGKD--VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QPDMAIMAV 88 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHH-HHTTCC--CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SHHHHHTTH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHH-HHCCCC--hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--CchHHHHHH
Confidence 478899999999999999988877644 444543 2345555666 7788999999999888887663 233444456
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHH-HHHHHH
Q 010290 89 PPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALK-TELRTI 167 (513)
Q Consensus 89 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~-~~l~~~ 167 (513)
+.+.+.++++++.+|..|+.+++.+. ...+.+.+.|.+.++..|+++.+|..|+.++..++...++... ..+++.
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~ 164 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDS 164 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHH
Confidence 77777788999999999988887764 3445667888888999999999999999999999886554432 478999
Q ss_pred HHHHcCCCchHHHHHHHHhHHHHHHHhhhh---hhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHH
Q 010290 168 YRQLCQDDMPMVRRSAATNLGKFAATVEAA---HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244 (513)
Q Consensus 168 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 244 (513)
+.++++|+++.|+..|+.+|..++..-+.. ......++.+.+.+.+.++..+...++.++.++.. +......+++
T Consensus 165 l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~--~~~~~~~~l~ 242 (591)
T 2vgl_B 165 LRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK--DDREAQSICE 242 (591)
T ss_dssp HHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC--SHHHHHHHHH
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC--ChHHHHHHHH
Confidence 999999999999999999999988753321 12233445555566677788888888777665532 1223456888
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhC--CCcc---ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHh
Q 010290 245 VIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPT---RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQH 319 (513)
Q Consensus 245 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~~~---~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 319 (513)
.+...+++.++.|+..+++++..+....+ .+.. ...+.+.+..++ ++++++|..|+.+++.+....+ +.+.+.
T Consensus 243 ~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p-~~~~~~ 320 (591)
T 2vgl_B 243 RVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRP-EILKQE 320 (591)
T ss_dssp HHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCC-STTTTC
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhCh-HHHHHH
Confidence 88888899999999999998888754331 1111 124455555554 4788999999999999887532 211111
Q ss_pred hhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHH
Q 010290 320 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399 (513)
Q Consensus 320 l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~ 399 (513)
+..+....+|+ +.+|..++..+..++..-+ .+.+++.+..++++.+..+|..++.+++.++..+... .+.++
T Consensus 321 -~~~~~~~~~d~-~~Ir~~al~~L~~l~~~~n----v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~--~~~~v 392 (591)
T 2vgl_B 321 -IKVFFVKYNDP-IYVKLEKLDIMIRLASQAN----IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS--AERCV 392 (591)
T ss_dssp -TTTTSCCTTSC-HHHHHHHHHHHHHTCCSST----HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH--HHHHH
T ss_pred -HHhheeccCCh-HHHHHHHHHHHHHHCChhh----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH--HHHHH
Confidence 11121222333 8888888888877764332 3456677777777878888888888888887765422 25667
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhChhhHhhhhHH
Q 010290 400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP 478 (513)
Q Consensus 400 ~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~ 478 (513)
+.+.+++.+....++..++..+..+....+.. ...+++.+...+. +..+.+|..+++.+|..+..... ...++.
T Consensus 393 ~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~--~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~l~ 467 (591)
T 2vgl_B 393 STLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK--YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN---ADELLE 467 (591)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS--CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHHHH
T ss_pred HHHHHHHcccchHHHHHHHHHHHHHHHHCcch--HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC---HHHHHH
Confidence 77777777777777777777777666553321 1224444555554 34566677777776665444322 123344
Q ss_pred HHHhhhcCcchHHH-HHHHHHHHhc
Q 010290 479 QVALIKSSRNLVLN-SVLSLLKNAG 502 (513)
Q Consensus 479 ~L~~~~~~~~~~~r-~~~~~~~~i~ 502 (513)
.+.+...+.+...| .++.++.+++
T Consensus 468 ~l~~~~~~~~~~vr~~~l~a~~Kl~ 492 (591)
T 2vgl_B 468 SFLEGFHDESTQVQLTLLTAIVKLF 492 (591)
T ss_dssp HHSTTCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHH
Confidence 44333333333333 4455555544
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.93 E-value=6.5e-23 Score=201.96 Aligned_cols=378 Identities=12% Similarity=0.033 Sum_probs=288.0
Q ss_pred hHHHHHhhccchhHHHHHHHHHHHHHHhh-cCh---HHHHh-hHHHHHHHhhcCC-CcchhhhHHhhhHhhcCCCCHH--
Q 010290 88 LPPLETLCTVEETCVRDKAVESLCRIGSQ-MRE---QDVVE-HFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPEA-- 159 (513)
Q Consensus 88 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~-~~~---~~~~~-~~~~~l~~l~~d~-~~~~R~~~~~~l~~~~~~~~~~-- 159 (513)
++.+...++++++.+|..|+.++..++.. .++ ..+.. .++|.+..+..++ ++.+|..++.++..++...++.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 66666666788888999999999987652 121 22333 5788888777776 7899999999999888754443
Q ss_pred --HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh---hhhHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhhccC
Q 010290 160 --LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLL 233 (513)
Q Consensus 160 --~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~ 233 (513)
.....++.+..+++++++.+|..++.+|+.++..... ......++|.+.+++.+ .++.+|..++.+++.++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 2356899999999999999999999999999864321 12223567888888885 78999999999999999654
Q ss_pred -C--hhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCcHHHHHHHHHhHHHH
Q 010290 234 -E--PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKI 307 (513)
Q Consensus 234 -~--~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~ 307 (513)
+ .......++|.+..++.+.++.+|..++.++..++..... ......++|.+..++.++++.+|..|+.+++.+
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 1 2233467899999999999999999999999998742111 111245889999999999999999999999999
Q ss_pred HhhhChH---HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCH---HHHHHhHHHHHHHhcCCCChHHHHHHHHH
Q 010290 308 CRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISK 381 (513)
Q Consensus 308 ~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 381 (513)
+...+.. .....++|.+..++.++++.+|..++.+++.++..... ......++|.+.++++++++.||..++.+
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~ 341 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA 341 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 8642211 11125788889999999999999999999999863221 11224789999999999999999999999
Q ss_pred HHHhhhhhhhh----hhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChh---------hHHHHH-----HHHHHH
Q 010290 382 LDQVNQVIGID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---------FFDDKL-----GALCMQ 443 (513)
Q Consensus 382 l~~i~~~~~~~----~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~---------~~~~~~-----~~~l~~ 443 (513)
|+.++.....+ .+...++|.+..++.++++.+|..++.++..++...+.. .+...+ ++.+..
T Consensus 342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 421 (450)
T 2jdq_A 342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF 421 (450)
T ss_dssp HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHH
Confidence 99997642222 123568899999999999999999999999998754321 122223 577777
Q ss_pred HhcCchhHHHHHHHHHHHHHHH
Q 010290 444 WLKDKVYSIRDAAANNVKRLAE 465 (513)
Q Consensus 444 ~l~d~~~~VR~~a~~~l~~l~~ 465 (513)
++.++++.||..|...+..++.
T Consensus 422 l~~~~~~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 422 LQSHENQEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHHHCC
Confidence 8888999999999998887763
No 15
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.92 E-value=6.9e-22 Score=199.93 Aligned_cols=457 Identities=14% Similarity=0.122 Sum_probs=334.0
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhh
Q 010290 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLL 88 (513)
Q Consensus 10 ~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~ 88 (513)
.+..+++.++++|...|..+.-.+..++.. .++. ..-+++.+.+ +.++++.+|..|...++.+. .......+.
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~-~~e~-~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~ 123 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKS-QPDM-AIMAVNSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLC 123 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHH-SHHH-HHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHccc-CchH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHH
Confidence 366778889999999998888777776553 2322 2334566666 88999999999999998864 456777888
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHH-hhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH----HHHH
Q 010290 89 PPLETLCTVEETCVRDKAVESLCRIGSQMREQDVV-EHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA----LKTE 163 (513)
Q Consensus 89 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~-~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~----~~~~ 163 (513)
|.+..++.|+++.||..|+.++..+....+ +... ..++|.+..+..|+++.+|..|+.+++.++..-++. ....
T Consensus 124 ~~l~~~L~d~~~~VRk~A~~al~~i~~~~p-~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~ 202 (591)
T 2vgl_B 124 EPLRKCLKDEDPYVRKTAAVCVAKLHDINA-QMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQ 202 (591)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHHSSC-CCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHH
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHhhCh-hhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHH
Confidence 888899999999999999999999998543 3332 357899999999999999999999999998765422 2344
Q ss_pred HHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCC--hhh---h
Q 010290 164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE--PQD---C 238 (513)
Q Consensus 164 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~~~---~ 238 (513)
.+..++..+.+.++..+..+.+.++.++.. .+.....+++.+..++++.++.|+..|+.++..+....+ ++. .
T Consensus 203 ~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~--~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~ 280 (591)
T 2vgl_B 203 NINKLLTALNECTEWGQIFILDCLSNYNPK--DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML 280 (591)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHTSCCC--SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH
T ss_pred HHHHHHHcCCCCCchHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH
Confidence 555666666677788887777777655422 123346788888888999999999999999999886542 211 2
Q ss_pred hhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHH
Q 010290 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQ 318 (513)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 318 (513)
...+.+.+..+. ++++.+|..++.+++.+....+... ...+- .+....+|+ ..||..|+..+..++..- ..+
T Consensus 281 ~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~-~~~~~-~~~~~~~d~-~~Ir~~al~~L~~l~~~~----nv~ 352 (591)
T 2vgl_B 281 LKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEIL-KQEIK-VFFVKYNDP-IYVKLEKLDIMIRLASQA----NIA 352 (591)
T ss_dssp HHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTT-TTCTT-TTSCCTTSC-HHHHHHHHHHHHHTCCSS----THH
T ss_pred HHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHH-HHHHH-hheeccCCh-HHHHHHHHHHHHHHCChh----hHH
Confidence 234556666555 4788999999999999998644322 22221 222233444 899999998888765422 235
Q ss_pred hhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhH
Q 010290 319 HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (513)
Q Consensus 319 ~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l 398 (513)
.+++.+..++.+.++.+|..++..++.++..++. ....+++.+.+++++....|+..++.++..+...... ..+.+
T Consensus 353 ~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~--~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~--~~~~~ 428 (591)
T 2vgl_B 353 QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ--SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN--KYESI 428 (591)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS--SCCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh--HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcc--hHHHH
Confidence 6777777888999999999999999999987643 2456889999999999999999999999988765432 22566
Q ss_pred HHHHHHhhc-CCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhH
Q 010290 399 LPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIV 477 (513)
Q Consensus 399 ~~~l~~l~~-~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~ 477 (513)
++.+.+.+. .....+|.++++++|..+..... ...++..+.+.+.+.++.||..++.++.++....++.. +..+
T Consensus 429 v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~--~~~i 503 (591)
T 2vgl_B 429 IATLCENLDSLDEPDARAAMIWIVGEYAERIDN---ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET--QELV 503 (591)
T ss_dssp HHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT--HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHcccccccC---HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH--HHHH
Confidence 777777776 45678999999999988766543 23566777777778889999999999999998765432 2344
Q ss_pred HHHHhh-hcC-cchHHH
Q 010290 478 PQVALI-KSS-RNLVLN 492 (513)
Q Consensus 478 ~~L~~~-~~~-~~~~~r 492 (513)
..+.+. ..| .++-.|
T Consensus 504 ~~ll~~~~~d~~d~evr 520 (591)
T 2vgl_B 504 QQVLSLATQDSDNPDLR 520 (591)
T ss_dssp HHHHHHHHTTCCCHHHH
T ss_pred HHHHHHhhhcCCChHHH
Confidence 444443 334 454343
No 16
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.92 E-value=5.5e-22 Score=206.52 Aligned_cols=490 Identities=12% Similarity=0.049 Sum_probs=334.5
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCch-h--hhh
Q 010290 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLE-Y--ANV 86 (513)
Q Consensus 11 i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~-~--~~~ 86 (513)
+..+++.|.+++...|..+++.+..... .......+|.+.+ +.++++.+|..++.+|+.++....... . ...
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~----~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~ 192 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDD----AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 192 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhH----HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence 5788899999988888888877664422 2223455666666 667899999999999999887432111 1 124
Q ss_pred hhHHHHHhhc-cchhHHHHHHHHHHHHHHhhcCh--HHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH---H
Q 010290 87 LLPPLETLCT-VEETCVRDKAVESLCRIGSQMRE--QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA---L 160 (513)
Q Consensus 87 l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~---~ 160 (513)
+++.|..++. ++++.+|..|+.+|..++..-.. .......+|.+..+..+++..+|..++.++..++...+.. .
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v 272 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAV 272 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 5565555554 45889999999999998764221 1223347888999999889999999999999887654332 2
Q ss_pred -HHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh---hhhHHHHHHHHHHhhhccchh-HHHHHHHHHHHhhccCCh
Q 010290 161 -KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDS-VRLLAVEGCGALGKLLEP 235 (513)
Q Consensus 161 -~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~-vr~~a~~~l~~l~~~~~~ 235 (513)
....++.+..++.++++.++..++.++..++..... .......++.+.+++.+.++. .+..+..++..++..-..
T Consensus 273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~ 352 (780)
T 2z6g_A 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 352 (780)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTH
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHH
Confidence 356889999999999999999999999877742111 112224567777777766544 555677778777753221
Q ss_pred h--hhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhCh
Q 010290 236 Q--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP 313 (513)
Q Consensus 236 ~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 313 (513)
. .....++|.+..++.+.+..++..++.+|.+++...........++|.+..++++.++.+|..|+.+|+.++..- .
T Consensus 353 ~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~-~ 431 (780)
T 2z6g_A 353 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN-Y 431 (780)
T ss_dssp HHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-H
T ss_pred HHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-H
Confidence 1 112347899999999999999999999999998765444334678999999999999999999999999987631 1
Q ss_pred H----HHHHhhhhhhhhhcCC-Cc-HHHHHHHHHHHHHhchhhCH------HHHHHhHHHHHHHhcCCCCh-HHHHHHHH
Q 010290 314 E----LAIQHILPCVKELSSD-SS-QHVRSALATVIMGMAPILGK------DATIEQLLPIFLSLLKDEFP-DVRLNIIS 380 (513)
Q Consensus 314 ~----~~~~~l~~~l~~~~~d-~~-~~vr~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~~l~d~~~-~vr~~a~~ 380 (513)
+ ......++.+..++.+ .+ ..+|..++.+++.++...+. .......+|.+.++|.+++. .+|..++.
T Consensus 432 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~ 511 (780)
T 2z6g_A 432 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 511 (780)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHH
Confidence 1 1112356667666654 23 48999999999999864332 12234568999999998774 99999999
Q ss_pred HHHHhhhhhhhh--hhhhhHHHHHHHhhcCCCh----------------------hHHHHHHHHHHHHHHHhChh--hHH
Q 010290 381 KLDQVNQVIGID--LLSQSLLPAIVELAEDRHW----------------------RVRLAIIEYIPLLASQLGVG--FFD 434 (513)
Q Consensus 381 ~l~~i~~~~~~~--~~~~~l~~~l~~l~~~~~~----------------------~vR~~~~~~l~~l~~~~~~~--~~~ 434 (513)
+|+.++..-... .....++|.|..++.+.++ .++..++.+++.++...... ...
T Consensus 512 aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~ 591 (780)
T 2z6g_A 512 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRG 591 (780)
T ss_dssp HHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHH
Confidence 999997532211 1234677778777765443 35566677776665321110 112
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC--hhhHhhhhHHHHHhhhcCcchHHH-HHHHHHHHhcccc
Q 010290 435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG--PDWAMQHIVPQVALIKSSRNLVLN-SVLSLLKNAGIDA 505 (513)
Q Consensus 435 ~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~--~~~~~~~i~~~L~~~~~~~~~~~r-~~~~~~~~i~~~~ 505 (513)
...+|.+..++.+++++||..++.+++.+...-. ........++.|..++++++.-.| .++.++.+++.+.
T Consensus 592 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 592 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp TCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTS
T ss_pred CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 3468999999999999999999999998863211 011124478889999988865444 7778888877543
No 17
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.91 E-value=2.4e-21 Score=198.71 Aligned_cols=479 Identities=12% Similarity=0.065 Sum_probs=339.8
Q ss_pred CcHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHh-h--hhhhhhhhhh-ccC-CchHHHHHHHHHhhcccccccCch-
Q 010290 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEER-T--RKELIPFLSE-NND-DDDEVLLAMAEELGVFIPYVGGLE- 82 (513)
Q Consensus 9 ~~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~-~--~~~l~~~l~~-~~~-~~~~vr~~~~~~l~~~~~~~~~~~- 82 (513)
-.+..++..|+++|+.+|..|+..|..++....... . ....++.+.+ +.+ +++++|..++..|..++.......
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~ 93 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 93 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHH
Confidence 348889999999999999999999999976443221 1 1245666666 544 489999999999998776422111
Q ss_pred -hhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChH--H-HHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCH
Q 010290 83 -YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ--D-VVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE 158 (513)
Q Consensus 83 -~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~--~-~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~ 158 (513)
.....++.|..++.++++.+|..|+.+|..++..-+.. . .....+|.+..+..++++.++..++.++..++...++
T Consensus 94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~ 173 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 173 (644)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcH
Confidence 12346788888888899999999999999999874331 2 2355889999998888888888888888887764322
Q ss_pred H----HHHHHHHHHHHHcCCCc-hHHHHHHHHhHHHHHHHhh--hhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhc
Q 010290 159 A----LKTELRTIYRQLCQDDM-PMVRRSAATNLGKFAATVE--AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGK 231 (513)
Q Consensus 159 ~----~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~ 231 (513)
. .....++.+..++.+.+ ..++..++.+|..++..-. ........+|.+..++.+.+..++..++.++..++.
T Consensus 174 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 2 22345788888887664 5677888888888774211 112223468888889999999999999999999987
Q ss_pred cCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCC--cHHHHHHHHHhHHH
Q 010290 232 LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDN--EAEVRIAAAGKVTK 306 (513)
Q Consensus 232 ~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d~--~~~vr~~a~~~l~~ 306 (513)
..+.......++|.+..++.+.++.+|..++.+|.+++..-.. .......++.+..++.+. .+.++..|+.+|+.
T Consensus 254 ~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~n 333 (644)
T 2z6h_A 254 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 333 (644)
T ss_dssp GCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 7554444456899999999999999999999999998752100 111234788888888763 27999999999999
Q ss_pred HHhhhChH------HHHHhhhhhhhhhcCCCc-HHHHHHHHHHHHHhchhhCH--HHHHHhHHHHHHHhcCCCC------
Q 010290 307 ICRILNPE------LAIQHILPCVKELSSDSS-QHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEF------ 371 (513)
Q Consensus 307 ~~~~~~~~------~~~~~l~~~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~------ 371 (513)
++...+.. ......+|.+..++.+++ +.+|..++.+++.++..-.. ......++|.+.+++.+.+
T Consensus 334 L~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~ 413 (644)
T 2z6h_A 334 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 413 (644)
T ss_dssp HTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC
T ss_pred HhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhH
Confidence 97532221 112356788888888764 89999999999999853221 1223467788888776643
Q ss_pred ----------------hHHHHHHHHHHHHhhhhhhhhh--hhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhCh-hh
Q 010290 372 ----------------PDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-GF 432 (513)
Q Consensus 372 ----------------~~vr~~a~~~l~~i~~~~~~~~--~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~-~~ 432 (513)
..++..++.+|..++....... .....+|.+..++.+++..+|..++.++..++..-.. ..
T Consensus 414 a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~ 493 (644)
T 2z6h_A 414 TSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEA 493 (644)
T ss_dssp ----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred hhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHH
Confidence 4566677777776654332211 2346789999999999999999999999888743111 11
Q ss_pred H-HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhhcCc
Q 010290 433 F-DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKSSR 487 (513)
Q Consensus 433 ~-~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~~~ 487 (513)
+ ....++.+..++.++++.||..|+.+++.+...-+..+...-.+..+..++.+.
T Consensus 494 i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~ 549 (644)
T 2z6h_A 494 IEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTE 549 (644)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCS
T ss_pred HHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCC
Confidence 1 123578889999999999999999999999876543332111345555555554
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.91 E-value=1.4e-21 Score=192.30 Aligned_cols=376 Identities=13% Similarity=0.077 Sum_probs=285.0
Q ss_pred HHHHHHhhcCCCcchhhhHHhhhHhhcC-CCCH--H--HHH-HHHHHHHHHcCCC-chHHHHHHHHhHHHHHHHhhh---
Q 010290 127 IPLVKRLAAGEWFTARVSSCGLFHVAYP-SAPE--A--LKT-ELRTIYRQLCQDD-MPMVRRSAATNLGKFAATVEA--- 196 (513)
Q Consensus 127 ~~~l~~l~~d~~~~~R~~~~~~l~~~~~-~~~~--~--~~~-~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~--- 196 (513)
+|.+.+...++++.+|..|+..+..+.. ..++ . ... .+++.+.++++++ ++.+|..++.++..++.....
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5556666677788899999999987653 1121 1 223 6899999999988 899999999999999863211
Q ss_pred hhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCh---hhhhhhHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHh
Q 010290 197 AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAV 272 (513)
Q Consensus 197 ~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~ 272 (513)
.......+|.+.+++.++++.+|..|+.+|+.++...+. ......++|.+..++.+ .++.+|..++.++++++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 122346889999999999999999999999999875322 11123578889998885 78999999999999998543
Q ss_pred CC---CccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhCh---HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHh
Q 010290 273 GP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGM 346 (513)
Q Consensus 273 ~~---~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l 346 (513)
+. .......+|.+..++.+.++.+|..++.+++.++..... ......++|.+..++.++++.+|..++.+++.+
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 11 122367899999999999999999999999999864211 112245788888999999999999999999999
Q ss_pred chhhCHH---HHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHhhcCCChhHHHHHHHH
Q 010290 347 APILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEY 420 (513)
Q Consensus 347 ~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~~~~~~vR~~~~~~ 420 (513)
+...+.. .....++|.+.++++++++.+|..++.+|+.++..... ......++|.+..++.+++..+|..++.+
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~ 341 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA 341 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 8643321 11235889999999999999999999999999853211 11235788999999999999999999999
Q ss_pred HHHHHHHhChhh----HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh---------hHhhhh-----HHHHHh
Q 010290 421 IPLLASQLGVGF----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---------WAMQHI-----VPQVAL 482 (513)
Q Consensus 421 l~~l~~~~~~~~----~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---------~~~~~i-----~~~L~~ 482 (513)
++.++....++. ....++|.+..++.++++.||..++.+++.++...... ...+.+ ++.|..
T Consensus 342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 421 (450)
T 2jdq_A 342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF 421 (450)
T ss_dssp HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHH
Confidence 999987644332 23458999999999999999999999999998754321 011222 677888
Q ss_pred hhcCcchHHH-HHHHHHHHhc
Q 010290 483 IKSSRNLVLN-SVLSLLKNAG 502 (513)
Q Consensus 483 ~~~~~~~~~r-~~~~~~~~i~ 502 (513)
+.+++++..+ .++.++.++-
T Consensus 422 l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 422 LQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHC
Confidence 8888877555 6777777654
No 19
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.91 E-value=1.2e-21 Score=196.51 Aligned_cols=382 Identities=13% Similarity=0.066 Sum_probs=293.4
Q ss_pred hhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcCh----HHHHhhHHHHHHHhhcCC-CcchhhhHHhhhHhhcCCCCHH
Q 010290 85 NVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE----QDVVEHFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPEA 159 (513)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~l~~d~-~~~~R~~~~~~l~~~~~~~~~~ 159 (513)
...++.+...+.++++.+|..|+.++..++..-.. ..+...++|.+..+..++ ++.+|..++.+++.++...+..
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 34466666666778889999999999998765321 223445788888888876 7899999999999988764333
Q ss_pred ----HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhh---hhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhcc
Q 010290 160 ----LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE---AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL 232 (513)
Q Consensus 160 ----~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 232 (513)
.....++.+..++.++++.||..++.+|+.++...+ .......++|.+..++.+.+..++..++.++..++..
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence 224568899999999999999999999999986421 1222345788889999999999999999999999965
Q ss_pred C-C--hhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCcHHHHHHHHHhHHH
Q 010290 233 L-E--PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTK 306 (513)
Q Consensus 233 ~-~--~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~ 306 (513)
- + .......++|.+..++.+.++.+|..++.+|+.++..... ......++|.+..++.+.++.+|..|+.+|+.
T Consensus 246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~ 325 (530)
T 1wa5_B 246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325 (530)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHH
Confidence 4 1 2234456899999999999999999999999999843111 11123678999999999999999999999999
Q ss_pred HHhhhCh---HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCH---HHHHHhHHHHHHHhcCCCChHHHHHHHH
Q 010290 307 ICRILNP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIIS 380 (513)
Q Consensus 307 ~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~ 380 (513)
++...+. ..+...++|.+..++.++++.+|..++.+++.++..... ......++|.+.+++.++++.+|..++.
T Consensus 326 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 405 (530)
T 1wa5_B 326 IVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACW 405 (530)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 8753211 112246788899999999999999999999999863221 1122467899999999999999999999
Q ss_pred HHHHhhhhhhh--h----hhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChh---------hHHH-----HHHHH
Q 010290 381 KLDQVNQVIGI--D----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---------FFDD-----KLGAL 440 (513)
Q Consensus 381 ~l~~i~~~~~~--~----~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~---------~~~~-----~~~~~ 440 (513)
+|+.++...+. + .....++|.+..++.++++.+|..++.++..+....... .+.. ..++.
T Consensus 406 aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 485 (530)
T 1wa5_B 406 AISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEK 485 (530)
T ss_dssp HHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHH
Confidence 99999875332 2 123468899999999999999999999999998764321 1221 24677
Q ss_pred HHHHhcCchhHHHHHHHHHHHHHHHH
Q 010290 441 CMQWLKDKVYSIRDAAANNVKRLAEE 466 (513)
Q Consensus 441 l~~~l~d~~~~VR~~a~~~l~~l~~~ 466 (513)
+..++.++++.|+..|...+..++..
T Consensus 486 L~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 486 IFNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp HHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 88889999999999999998887754
No 20
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.91 E-value=2.2e-20 Score=189.55 Aligned_cols=478 Identities=12% Similarity=0.080 Sum_probs=346.3
Q ss_pred HHHHHHHhhcHHHHHHHhChH----hhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccC---chh-hhhhhHHHHH
Q 010290 23 IQLRLNSIRRLSTIARALGEE----RTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG---LEY-ANVLLPPLET 93 (513)
Q Consensus 23 ~~~r~~a~~~l~~i~~~~~~~----~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~---~~~-~~~l~~~l~~ 93 (513)
+..|..|.=.+..+...++.+ .+.+.+-.|+.. ....+.+-...++.++..+...... ..+ ....++.+..
T Consensus 218 ~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~ 297 (810)
T 3now_A 218 GSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILA 297 (810)
T ss_dssp TTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHH
Confidence 467888888888888887742 233333444444 5556666677778888877663321 111 3466788888
Q ss_pred hhccchhHHHHHHHHHHHHHHhhcCh-HHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCC---------HHHHHH
Q 010290 94 LCTVEETCVRDKAVESLCRIGSQMRE-QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAP---------EALKTE 163 (513)
Q Consensus 94 l~~~~~~~vR~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~---------~~~~~~ 163 (513)
+++++++.++..|+.+++..+..-.. +.+.+.-.|.+..+.++++..+|..|+..+..+....+ ......
T Consensus 298 Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~ 377 (810)
T 3now_A 298 MATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALK 377 (810)
T ss_dssp HHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHH
Confidence 88899999999999999998776221 22222334888888888778889988888888764322 113567
Q ss_pred HHHHHHHHcCCC--chHHHHHHHHhHHHHHHHhhh-hh-h-HHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChh--
Q 010290 164 LRTIYRQLCQDD--MPMVRRSAATNLGKFAATVEA-AH-L-KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ-- 236 (513)
Q Consensus 164 l~~~l~~l~~d~--~~~vr~~a~~~l~~l~~~~~~-~~-~-~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-- 236 (513)
+++.+.+++.++ ++.+|+.++++|..++..-.. +. . ....+|.|.++++.++..++..++.++++++.....+
T Consensus 378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~ 457 (810)
T 3now_A 378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEM 457 (810)
T ss_dssp HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhh
Confidence 889999998887 899999999999998753321 11 2 2468899999999888999999999999999754210
Q ss_pred ---------------------------------hhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC--CCccccch
Q 010290 237 ---------------------------------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRSDV 281 (513)
Q Consensus 237 ---------------------------------~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l 281 (513)
-.....+|.+..++.++++.+|..++++|++++..-. ......-.
T Consensus 458 ~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Ga 537 (810)
T 3now_A 458 LPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGG 537 (810)
T ss_dssp CCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTH
T ss_pred hHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 0112378999999999999999999999999973211 01123457
Q ss_pred HHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHH-----HHhhhhhhhhhcCCC-cHHHHHHHHHHHHHhchhhCH---
Q 010290 282 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA-----IQHILPCVKELSSDS-SQHVRSALATVIMGMAPILGK--- 352 (513)
Q Consensus 282 l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~-----~~~l~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~--- 352 (513)
+|.++.++.+.++.+|..|+++|+.++....++.. ....+|.+..++.+. +...+..++.+|..++..-..
T Consensus 538 ip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~ 617 (810)
T 3now_A 538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQ 617 (810)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHH
Confidence 89999999999999999999999999876544421 124678888888754 445667889999999864211
Q ss_pred HHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhh-hhh--hhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhC
Q 010290 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-LLS--QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429 (513)
Q Consensus 353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~-~~~--~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~ 429 (513)
.......+|.+..++.++++.||.+|+++++.++..-... .+. ...++.|..++.+++..+|..|+++++.++....
T Consensus 618 ~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~ 697 (810)
T 3now_A 618 RIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSV 697 (810)
T ss_dssp HHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCH
Confidence 2223467899999999999999999999999997632211 111 3578899999999999999999999999987411
Q ss_pred ---hhhHH-HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh----hHhhhhHHHHHhhhcCc----chHHHHHHHH
Q 010290 430 ---VGFFD-DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD----WAMQHIVPQVALIKSSR----NLVLNSVLSL 497 (513)
Q Consensus 430 ---~~~~~-~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~----~~~~~i~~~L~~~~~~~----~~~~r~~~~~ 497 (513)
...+. ...+|.+..++.+++..+|..|++++..+... +++ ......++.|..+++++ +-++..++.+
T Consensus 698 ~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~a 776 (810)
T 3now_A 698 KCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQC 776 (810)
T ss_dssp HHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHH
Confidence 12233 45889999999999999999999999999873 222 12367889999988654 3455566666
Q ss_pred HHHh
Q 010290 498 LKNA 501 (513)
Q Consensus 498 ~~~i 501 (513)
++.+
T Consensus 777 L~~l 780 (810)
T 3now_A 777 LAAA 780 (810)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.90 E-value=2e-21 Score=195.03 Aligned_cols=378 Identities=12% Similarity=0.093 Sum_probs=289.0
Q ss_pred HHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCH---H--HHHHHHHHHHHHcCCC-chHHHHHHHHhHHHHHHHhh---h
Q 010290 126 FIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE---A--LKTELRTIYRQLCQDD-MPMVRRSAATNLGKFAATVE---A 196 (513)
Q Consensus 126 ~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~---~--~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~---~ 196 (513)
.+|.+.....++++.+|..|+..+..+....+. . ....+++.+..++.++ ++.+|..++.+|+.++.... .
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 167 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 167 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 356666666777888999999999988654321 1 3356789999999997 89999999999999986322 1
Q ss_pred hhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCh---hhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Q 010290 197 AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG 273 (513)
Q Consensus 197 ~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~ 273 (513)
.......+|.+..++.++++.+|..|+.+|+.++...+. ......++|.+..++.+.++.++..++.+|..++...+
T Consensus 168 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 247 (530)
T 1wa5_B 168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK 247 (530)
T ss_dssp HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC
Confidence 122245688899999999999999999999999864321 11233588999999999999999999999999985431
Q ss_pred CC---ccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhCh--H-HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhc
Q 010290 274 PE---PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--E-LAIQHILPCVKELSSDSSQHVRSALATVIMGMA 347 (513)
Q Consensus 274 ~~---~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~-~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~ 347 (513)
.. .....++|.+..++.+.++.+|..|+.+|+.++...+. . .....++|.+..++.++++.+|..++.+++.++
T Consensus 248 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 248 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 327 (530)
T ss_dssp SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHH
Confidence 11 12357899999999999999999999999999864211 1 122367889999999999999999999999998
Q ss_pred hhhCH---HHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHhhcCCChhHHHHHHHHH
Q 010290 348 PILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYI 421 (513)
Q Consensus 348 ~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l 421 (513)
...+. ......++|.+..++.++++.+|..|+.+|+.++..... ..+...++|.+..++.++++.+|..+++++
T Consensus 328 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL 407 (530)
T 1wa5_B 328 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAI 407 (530)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 54322 122346899999999999999999999999999763211 112356889999999999999999999999
Q ss_pred HHHHHHhCh--hh----HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh----------hH----hhhhHHHHH
Q 010290 422 PLLASQLGV--GF----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD----------WA----MQHIVPQVA 481 (513)
Q Consensus 422 ~~l~~~~~~--~~----~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~----------~~----~~~i~~~L~ 481 (513)
+.++...+. +. ....++|.+..++.++++.||..++++|..++...... +. ....++.|.
T Consensus 408 ~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~ 487 (530)
T 1wa5_B 408 SNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIF 487 (530)
T ss_dssp HHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHH
Confidence 999876443 22 22347899999999999999999999999998754321 11 133578888
Q ss_pred hhhcCcch-HHHHHHHHHHHhcc
Q 010290 482 LIKSSRNL-VLNSVLSLLKNAGI 503 (513)
Q Consensus 482 ~~~~~~~~-~~r~~~~~~~~i~~ 503 (513)
.+.++++. ++..+..++.++..
T Consensus 488 ~L~~~~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 488 NCQQNENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp GGGGCSCHHHHHHHHHHHHHHSS
T ss_pred HHHcCCCHHHHHHHHHHHHHHCC
Confidence 88888865 55577788877653
No 22
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.90 E-value=1.3e-21 Score=203.79 Aligned_cols=478 Identities=13% Similarity=0.068 Sum_probs=329.7
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHh-h--hhhhhhhhhh-cc-CCchHHHHHHHHHhhcccccccCc--hh
Q 010290 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEER-T--RKELIPFLSE-NN-DDDDEVLLAMAEELGVFIPYVGGL--EY 83 (513)
Q Consensus 11 i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~-~--~~~l~~~l~~-~~-~~~~~vr~~~~~~l~~~~~~~~~~--~~ 83 (513)
++.++..|.++|+.+|..|+..|..++....... . ....++.+.+ +. +.++++|..++.+|..++...... ..
T Consensus 152 ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~ 231 (780)
T 2z6g_A 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIF 231 (780)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 6678888889999999999999998875322111 1 1245666666 44 458999999999999877632111 11
Q ss_pred hhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcCh--HHH-HhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH-
Q 010290 84 ANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE--QDV-VEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA- 159 (513)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--~~~-~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~- 159 (513)
....++.|..++.++++.+|..|+.+|..++...+. ..+ ....+|.+..+..++++.+|..++.++..++....+.
T Consensus 232 ~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~ 311 (780)
T 2z6g_A 232 KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 311 (780)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHH
Confidence 235678888888889999999999999999986433 222 3457888888888888888988888888666432221
Q ss_pred ---HHHHHHHHHHHHcCCCchH-HHHHHHHhHHHHHHHhh--hhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccC
Q 010290 160 ---LKTELRTIYRQLCQDDMPM-VRRSAATNLGKFAATVE--AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL 233 (513)
Q Consensus 160 ---~~~~l~~~l~~l~~d~~~~-vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~ 233 (513)
.....++.+..++.+.+.. ++..++.++..++..-. ........+|.+..++.+.+..++..++.++..++...
T Consensus 312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~ 391 (780)
T 2z6g_A 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391 (780)
T ss_dssp HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccc
Confidence 1224567788888877654 45567777877774211 12223346788889999999999999999999998766
Q ss_pred ChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCC-c-HHHHHHHHHhHHHHH
Q 010290 234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDN-E-AEVRIAAAGKVTKIC 308 (513)
Q Consensus 234 ~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d~-~-~~vr~~a~~~l~~~~ 308 (513)
+.......++|.+..++.+.++.+|..++.+|+.++..-.. .......++.+.+++.+. + ..+|..|+.+|+.++
T Consensus 392 ~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~ 471 (780)
T 2z6g_A 392 TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 471 (780)
T ss_dssp TTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 54434456899999999999999999999999998642100 011235678888888653 3 489999999999986
Q ss_pred hhhChH------HHHHhhhhhhhhhcCCCc-HHHHHHHHHHHHHhchhhCHH--HHHHhHHHHHHHhcCCCC--------
Q 010290 309 RILNPE------LAIQHILPCVKELSSDSS-QHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDEF-------- 371 (513)
Q Consensus 309 ~~~~~~------~~~~~l~~~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~-------- 371 (513)
...+.. ......+|.+..++.+.+ +.+|..++.+++.++..-... .....++|.+.+++.+.+
T Consensus 472 ~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa 551 (780)
T 2z6g_A 472 SRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTS 551 (780)
T ss_dssp SSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred hcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHh
Confidence 532221 112355788888887665 699999999999998522111 112356777877776543
Q ss_pred --------------hHHHHHHHHHHHHhhhhhhhh--hhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhCh-hhH-
Q 010290 372 --------------PDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-GFF- 433 (513)
Q Consensus 372 --------------~~vr~~a~~~l~~i~~~~~~~--~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~-~~~- 433 (513)
..++..++.+|+.++...... ......+|.|..++.+++..+|..++.++..++..-.. ..+
T Consensus 552 ~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~ 631 (780)
T 2z6g_A 552 MGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIE 631 (780)
T ss_dssp ------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred hccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 346677777888775422111 12356789999999999999999999999988632111 111
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhhcCcc
Q 010290 434 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKSSRN 488 (513)
Q Consensus 434 ~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~~~~ 488 (513)
....++.+..++.++++.||..|+.+|..+...-...+...--+..+..++.+.+
T Consensus 632 ~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l~~~~~ 686 (780)
T 2z6g_A 632 AEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP 686 (780)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC-----
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhhhccccHHHHHHHHhCCC
Confidence 1236788999999999999999999999998865533321112333444454443
No 23
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.90 E-value=6e-21 Score=191.95 Aligned_cols=454 Identities=13% Similarity=0.032 Sum_probs=298.9
Q ss_pred hhhhhhhh-ccCCchHHHHHHHHHhhcccccccCch-h--hhhhhHHHHHhhc-cchhHHHHHHHHHHHHHHhhcCh--H
Q 010290 48 ELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLE-Y--ANVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRE--Q 120 (513)
Q Consensus 48 ~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~-~--~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~--~ 120 (513)
..+|.+.+ +.++++.+|..++..|+.++....... . ....++.+..++. ++++.+|..++.+|..++..-.. .
T Consensus 17 ~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~ 96 (529)
T 1jdh_A 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 96 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHH
Confidence 34555555 556677777777777777665321110 0 1133444444443 34677788888887777653211 1
Q ss_pred HHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH----HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhh-
Q 010290 121 DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA----LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE- 195 (513)
Q Consensus 121 ~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~- 195 (513)
......+|.+..+.+++++.+|..++..+..++..-+.. .....++.+.+++.++++.++..++.+|..++..-.
T Consensus 97 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~ 176 (529)
T 1jdh_A 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHH
Confidence 122336777777777777788888888888776543222 235678999999999999999999999988875211
Q ss_pred --hhhhHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhhccCChh--hhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 010290 196 --AAHLKSEIMSIFEELTQDDQ-DSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (513)
Q Consensus 196 --~~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 270 (513)
........+|.+.+++.+.+ ...+..+..++..++..-... -.....+|.+..++.+.++.++..++.++.+++.
T Consensus 177 ~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhc
Confidence 11122245666777776654 445666777888777532211 1123478899999999999999999999999987
Q ss_pred HhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH----HHHHhhhhhhhhhcCC--CcHHHHHHHHHHHH
Q 010290 271 AVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQHILPCVKELSSD--SSQHVRSALATVIM 344 (513)
Q Consensus 271 ~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~~~d--~~~~vr~~~~~~l~ 344 (513)
..+........+|.+.+++.+.++++|..|+.+|+.++..- ++ ......+|.+..++.+ .++.++..++.+++
T Consensus 257 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~ 335 (529)
T 1jdh_A 257 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN-YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335 (529)
T ss_dssp TCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC-HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 65444334578999999999999999999999999997631 11 1122446677676653 34899999999999
Q ss_pred HhchhhCH------HHHHHhHHHHHHHhcCCCC-hHHHHHHHHHHHHhhhhhhh--hhhhhhHHHHHHHhhcCCChhHHH
Q 010290 345 GMAPILGK------DATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRL 415 (513)
Q Consensus 345 ~l~~~~~~------~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~~~~~~~vR~ 415 (513)
.++...+. .......+|.+.++++++. +.+|..++.+++.++..-.. ......++|.+..++.++++.+|.
T Consensus 336 nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~ 415 (529)
T 1jdh_A 336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 415 (529)
T ss_dssp HHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred HHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHH
Confidence 99764332 1222356899999999886 59999999999998753221 122346788999988888888887
Q ss_pred HHHHHHHH----------------------HHHHhCh--hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH--hCh
Q 010290 416 AIIEYIPL----------------------LASQLGV--GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE--FGP 469 (513)
Q Consensus 416 ~~~~~l~~----------------------l~~~~~~--~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~--~~~ 469 (513)
.++++++. ++..... .......+|.+..++.|++++||..++.+++.+... ...
T Consensus 416 ~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~ 495 (529)
T 1jdh_A 416 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAE 495 (529)
T ss_dssp ----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHH
Confidence 66655443 2211000 011234678999999999999999999999988632 111
Q ss_pred hhHhhhhHHHHHhhhcCcchH-HHHHHHHHHHhc
Q 010290 470 DWAMQHIVPQVALIKSSRNLV-LNSVLSLLKNAG 502 (513)
Q Consensus 470 ~~~~~~i~~~L~~~~~~~~~~-~r~~~~~~~~i~ 502 (513)
.......++.|.+++++++.- +..+..++.+|+
T Consensus 496 ~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 496 AIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp HHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 111256788999999888654 447778877763
No 24
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.90 E-value=3.2e-21 Score=193.98 Aligned_cols=454 Identities=13% Similarity=0.058 Sum_probs=317.4
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChH-hhh--hhhhhhhhh-cc-CCchHHHHHHHHHhhcccccccCc--h
Q 010290 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEE-RTR--KELIPFLSE-NN-DDDDEVLLAMAEELGVFIPYVGGL--E 82 (513)
Q Consensus 10 ~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~-~~~--~~l~~~l~~-~~-~~~~~vr~~~~~~l~~~~~~~~~~--~ 82 (513)
.++.++..|+++|+.+|..|+..|..++..-... ... ...++.+.+ +. ++++++|..++..|..++...... .
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 4788899999999999999999999887432111 111 245666666 44 458899999999999887632211 1
Q ss_pred hhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcCh--HHH-HhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH
Q 010290 83 YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE--QDV-VEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA 159 (513)
Q Consensus 83 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--~~~-~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~ 159 (513)
.....+|.|..++.++++.++..++.+|..++..-+. ..+ ....+|.+..+..++++.+|..++.++..+....++.
T Consensus 98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~ 177 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHH
Confidence 1234678888888899999999999999999886432 222 3557899999999888999999988888776532221
Q ss_pred ----HHHHHHHHHHHHcCCCc-hHHHHHHHHhHHHHHHHhh--hhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhcc
Q 010290 160 ----LKTELRTIYRQLCQDDM-PMVRRSAATNLGKFAATVE--AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL 232 (513)
Q Consensus 160 ----~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 232 (513)
.....++.+..++.+.+ ..++..++..+..++..-. ........+|.+..++.++++.++..++.++..++..
T Consensus 178 ~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 257 (529)
T 1jdh_A 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 257 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcC
Confidence 22345677777776654 4556667777777764211 1122235788888899999999999999999999987
Q ss_pred CChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCC--CcHHHHHHHHHhHHHH
Q 010290 233 LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRD--NEAEVRIAAAGKVTKI 307 (513)
Q Consensus 233 ~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~ll~~l~~~l~d--~~~~vr~~a~~~l~~~ 307 (513)
.+.......++|.+.+++.++++.+|..++.+|++++..-. ........+|.+..++.+ .++.++..|+.+|+.+
T Consensus 258 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl 337 (529)
T 1jdh_A 258 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 337 (529)
T ss_dssp CTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 65544445689999999999999999999999999964210 001123467888888864 3479999999999998
Q ss_pred HhhhChH------HHHHhhhhhhhhhcCCCc-HHHHHHHHHHHHHhchhhCH--HHHHHhHHHHHHHhcCCCChHHHHHH
Q 010290 308 CRILNPE------LAIQHILPCVKELSSDSS-QHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPDVRLNI 378 (513)
Q Consensus 308 ~~~~~~~------~~~~~l~~~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a 378 (513)
+...+.. ......+|.+..++.+++ +.+|..++.+++.++..-.. ......++|.+.++++++++.+|..+
T Consensus 338 ~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 417 (529)
T 1jdh_A 338 TSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 417 (529)
T ss_dssp TSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC---
T ss_pred HcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHH
Confidence 6542221 122346788888888776 79999999999999853221 11224678999999988777887766
Q ss_pred HHHHHH----------------------hhhhhhh--hhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh--Chhh
Q 010290 379 ISKLDQ----------------------VNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL--GVGF 432 (513)
Q Consensus 379 ~~~l~~----------------------i~~~~~~--~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~--~~~~ 432 (513)
++++.. ++..... .......++.+..++.+++..+|..++.++..+...- ....
T Consensus 418 ~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i 497 (529)
T 1jdh_A 418 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI 497 (529)
T ss_dssp --------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 554443 3221110 1123456789999999999999999999998876320 0111
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q 010290 433 FDDKLGALCMQWLKDKVYSIRDAAANNVKRL 463 (513)
Q Consensus 433 ~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l 463 (513)
.....++.+..++.|+++.||..|..++..+
T Consensus 498 ~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 498 EAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 1223678899999999999999999999876
No 25
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.90 E-value=8.5e-21 Score=194.66 Aligned_cols=461 Identities=13% Similarity=0.044 Sum_probs=324.6
Q ss_pred hhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCch-h--hhhhhHHHHHhhc-cchhHHHHHHHHHHHHHHhhcCh
Q 010290 45 TRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLE-Y--ANVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRE 119 (513)
Q Consensus 45 ~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~-~--~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~ 119 (513)
.....+|.+.. +.++++.+|..++..|+.++....... . ....++.+...+. .+++.+|..|+.+|..++..-..
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~ 90 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 90 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh
Confidence 33445666666 678899999999999999987543211 1 1244555555554 45888999999999988764221
Q ss_pred --HHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH----HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHH
Q 010290 120 --QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA----LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAAT 193 (513)
Q Consensus 120 --~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 193 (513)
.......+|.+..+.++++..+|..++..+..++...+.. .....++.+..+++++++.++..++.+|..++..
T Consensus 91 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~ 170 (644)
T 2z6h_A 91 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170 (644)
T ss_dssp HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence 1122347888888888888999999999999887654332 2357899999999999999999999999988853
Q ss_pred hhh---hhhHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhhccCChh--hhhhhHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010290 194 VEA---AHLKSEIMSIFEELTQDDQ-DSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYE 267 (513)
Q Consensus 194 ~~~---~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~ 267 (513)
.+. .......+|.+.+++.+.+ +.++..++.++..++..-... -....+++.+..++.+.+..++..++.+|.+
T Consensus 171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~n 250 (644)
T 2z6h_A 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 250 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 211 1122345777777777654 567788888888887532211 1123478899999999999999999999999
Q ss_pred HHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhCh--H-HHHHhhhhhhhhhcCCC--cHHHHHHHHHH
Q 010290 268 LCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--E-LAIQHILPCVKELSSDS--SQHVRSALATV 342 (513)
Q Consensus 268 l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~-~~~~~l~~~l~~~~~d~--~~~vr~~~~~~ 342 (513)
++............+|.+.+++.+.++++|..|+.+|..++..-.. . ......++.+..++.+. .+.+|..++.+
T Consensus 251 L~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a 330 (644)
T 2z6h_A 251 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 330 (644)
T ss_dssp HGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence 9865444333457899999999999999999999999999763111 1 11224567777777653 37999999999
Q ss_pred HHHhchhhCHH------HHHHhHHHHHHHhcCCCC-hHHHHHHHHHHHHhhhhhhh--hhhhhhHHHHHHHhhcCCCh--
Q 010290 343 IMGMAPILGKD------ATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHW-- 411 (513)
Q Consensus 343 l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~~~~~~-- 411 (513)
++.++...+.. ......+|.+.++|.++. +.+|..++.+++.+...-.. ......++|.+.+++.+.++
T Consensus 331 L~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v 410 (644)
T 2z6h_A 331 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT 410 (644)
T ss_dssp HHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhh
Confidence 99998643321 222457899999999875 69999999999998753211 12345677888887766443
Q ss_pred --------------------hHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC-
Q 010290 412 --------------------RVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG- 468 (513)
Q Consensus 412 --------------------~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~- 468 (513)
.++..++.++..++...... ......+|.+..++.+++++||..++.++..+...-.
T Consensus 411 r~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~ 490 (644)
T 2z6h_A 411 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA 490 (644)
T ss_dssp TTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHH
T ss_pred hhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHH
Confidence 34556666666555432111 1123468999999999999999999999998874210
Q ss_pred -hhhHhhhhHHHHHhhhcCcchHHH-HHHHHHHHhcccc
Q 010290 469 -PDWAMQHIVPQVALIKSSRNLVLN-SVLSLLKNAGIDA 505 (513)
Q Consensus 469 -~~~~~~~i~~~L~~~~~~~~~~~r-~~~~~~~~i~~~~ 505 (513)
........++.|.+++.+++.-.| .++.++.+++.+.
T Consensus 491 ~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 491 AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 111124567888898888876555 6778887777654
No 26
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.89 E-value=5.9e-21 Score=191.66 Aligned_cols=380 Identities=13% Similarity=0.090 Sum_probs=289.7
Q ss_pred hhHHHHHhhccchhHHHHHHHHHHHHHHhhcC----hHHHHhhHHHHHHHhhcCCC-cchhhhHHhhhHhhcCCCCHH--
Q 010290 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMR----EQDVVEHFIPLVKRLAAGEW-FTARVSSCGLFHVAYPSAPEA-- 159 (513)
Q Consensus 87 l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~----~~~~~~~~~~~l~~l~~d~~-~~~R~~~~~~l~~~~~~~~~~-- 159 (513)
-+|.+...+.++++.+|..|+.++..++..-+ ...+...++|.+..+..+++ +.+|..++.+++.++...++.
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 35666666677889999999999999976543 12344457888888887765 899999999999998754333
Q ss_pred --HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh---hhhHHHHHHHHHHhh-hccchhHHHHHHHHHHHhhccC
Q 010290 160 --LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELT-QDDQDSVRLLAVEGCGALGKLL 233 (513)
Q Consensus 160 --~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~ 233 (513)
.....++.+..++.++++.||..++.+|+.++..... .......+|.+..++ .+.++.++..++.++..++...
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 2235889999999999999999999999999864221 112224677778888 6788999999999999999764
Q ss_pred C--hhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCcHHHHHHHHHhHHHHH
Q 010290 234 E--PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKIC 308 (513)
Q Consensus 234 ~--~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~ 308 (513)
+ .......++|.+..++.+.++.++..++.+|+.++..... .......+|.+..++.++++.++..|+.+|+.++
T Consensus 235 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~ 314 (528)
T 4b8j_A 235 PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 314 (528)
T ss_dssp SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 2 2234466899999999999999999999999998742111 0112357899999999999999999999999998
Q ss_pred hhhChH---HHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHHhchhhCH---HHHHHhHHHHHHHhcCCCChHHHHHHHHH
Q 010290 309 RILNPE---LAIQHILPCVKELSSDS-SQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISK 381 (513)
Q Consensus 309 ~~~~~~---~~~~~l~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 381 (513)
...... .+...++|.+..++.++ ++.+|..++.+++.++..... ......++|.+..++.+.++.+|..++.+
T Consensus 315 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~a 394 (528)
T 4b8j_A 315 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWA 394 (528)
T ss_dssp TSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 632111 12235678888888888 999999999999999863211 11224678999999999999999999999
Q ss_pred HHHhhhhhhhhh----hhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChh---------hHHH-----HHHHHHHH
Q 010290 382 LDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---------FFDD-----KLGALCMQ 443 (513)
Q Consensus 382 l~~i~~~~~~~~----~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~---------~~~~-----~~~~~l~~ 443 (513)
|+.++.....+. ....+++.+..++.++++.++..++.++..+....+.. .+.. ..++.+..
T Consensus 395 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 474 (528)
T 4b8j_A 395 ISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIEN 474 (528)
T ss_dssp HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHH
Confidence 999987532221 23467899999999999999999999999998754221 1221 24667778
Q ss_pred HhcCchhHHHHHHHHHHHHHHHH
Q 010290 444 WLKDKVYSIRDAAANNVKRLAEE 466 (513)
Q Consensus 444 ~l~d~~~~VR~~a~~~l~~l~~~ 466 (513)
+.+++++.|+..|...+..++..
T Consensus 475 L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 475 LQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp GGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHcCCCHHHHHHHHHHHHHHCCC
Confidence 88999999999999999887654
No 27
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.88 E-value=9.7e-20 Score=184.91 Aligned_cols=448 Identities=13% Similarity=0.099 Sum_probs=327.3
Q ss_pred HHhcCccHHHHHHHhhcHHHHHHHhChHh-----hhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCch-hh-hhh
Q 010290 16 DELKNDDIQLRLNSIRRLSTIARALGEER-----TRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLE-YA-NVL 87 (513)
Q Consensus 16 ~~l~~~d~~~r~~a~~~l~~i~~~~~~~~-----~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~-~~-~~l 87 (513)
..+.+.+.+....|++++..+.... ++. .....+|.+.. +.++++.++..+..+++..+....... .. ..+
T Consensus 254 ~~~~~~~~~~~~~a~~alt~i~~g~-~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv 332 (810)
T 3now_A 254 DKLLAPDMESKVRVTVAITALLNGP-LDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGV 332 (810)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHSSS-HHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH
T ss_pred HHhccCChHhHHHHHHHHHHHhcCC-HHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc
Confidence 3466788888888888888775422 111 13355677777 778899999999999998665321111 11 233
Q ss_pred hHHHHHhhccchhHHHHHHHHHHHHHHhhcC---h-HHH----HhhHHHHHHHhhcCC--CcchhhhHHhhhHhhcCCCC
Q 010290 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMR---E-QDV----VEHFIPLVKRLAAGE--WFTARVSSCGLFHVAYPSAP 157 (513)
Q Consensus 88 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~---~-~~~----~~~~~~~l~~l~~d~--~~~~R~~~~~~l~~~~~~~~ 157 (513)
|.|..++..+++.+|..|+-+|+++..... + ..+ ...+++.+.++..++ +..+|..++..+..+.....
T Consensus 333 -~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~ 411 (810)
T 3now_A 333 -DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAE 411 (810)
T ss_dssp -HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHH
T ss_pred -HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcH
Confidence 888888888888999999999999975321 1 111 234567777777666 78999999999998876543
Q ss_pred HH--H--HHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhh-----------------------------------hhh
Q 010290 158 EA--L--KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE-----------------------------------AAH 198 (513)
Q Consensus 158 ~~--~--~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-----------------------------------~~~ 198 (513)
.. . ....++.+..+++++++.++..++.+|+.++.... ...
T Consensus 412 vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~V 491 (810)
T 3now_A 412 CKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVL 491 (810)
T ss_dssp HHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHH
Confidence 33 2 25688999999999999999999999999997431 011
Q ss_pred hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChh--hhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc
Q 010290 199 LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP 276 (513)
Q Consensus 199 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 276 (513)
+....+|.|..++..+++.+|..|+.++.+++..-... -.....+|.+..++.+.+..+|..++.+|.+++.......
T Consensus 492 veaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~ 571 (810)
T 3now_A 492 ANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV 571 (810)
T ss_dssp HHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhh
Confidence 12247899999999999999999999999998431111 1123378999999988899999999999999986533221
Q ss_pred c-----ccchHHHHHHhcCCC-cHHHHHHHHHhHHHHHhhhCh---HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhc
Q 010290 277 T-----RSDVVPAYVRLLRDN-EAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMA 347 (513)
Q Consensus 277 ~-----~~~ll~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~ 347 (513)
. ....+|.+..++... +...+..|+.+|..++..-+. .......+|.+..++.+.+..+|..++++++.++
T Consensus 572 ~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa 651 (810)
T 3now_A 572 SFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLV 651 (810)
T ss_dssp HTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHT
T ss_pred hhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 1 124689999998754 445566889999988764111 1122356788888888999999999999999998
Q ss_pred hhhCH-HHHH--HhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhh--hh-hhh-hhHHHHHHHhhcCCChhHHHHHHHH
Q 010290 348 PILGK-DATI--EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--ID-LLS-QSLLPAIVELAEDRHWRVRLAIIEY 420 (513)
Q Consensus 348 ~~~~~-~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~--~~-~~~-~~l~~~l~~l~~~~~~~vR~~~~~~ 420 (513)
..-.. ..+. ...+|.+..++..++..+|..|+.+|+.+..... .. .+. ...+|.|..++.+++..+|..++++
T Consensus 652 ~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~a 731 (810)
T 3now_A 652 MSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVI 731 (810)
T ss_dssp TSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred CChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHH
Confidence 53211 1111 2478999999999999999999999999987311 12 233 4688999999999999999999999
Q ss_pred HHHHHHHhChhh----HHHHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHHH
Q 010290 421 IPLLASQLGVGF----FDDKLGALCMQWLKDK---VYSIRDAAANNVKRLAEE 466 (513)
Q Consensus 421 l~~l~~~~~~~~----~~~~~~~~l~~~l~d~---~~~VR~~a~~~l~~l~~~ 466 (513)
+..+... +.+. .....+|.+..++.++ +..|++.|.++|..+.+.
T Consensus 732 L~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 732 ILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp HHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 9999863 2221 1224788999998655 789999999999988763
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.88 E-value=6.9e-20 Score=183.85 Aligned_cols=376 Identities=14% Similarity=0.109 Sum_probs=284.0
Q ss_pred HHHHHHhhcCCCcchhhhHHhhhHhhcCCCC-H--H--HHHHHHHHHHHHcCCCc-hHHHHHHHHhHHHHHHHhhh---h
Q 010290 127 IPLVKRLAAGEWFTARVSSCGLFHVAYPSAP-E--A--LKTELRTIYRQLCQDDM-PMVRRSAATNLGKFAATVEA---A 197 (513)
Q Consensus 127 ~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~-~--~--~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~~---~ 197 (513)
+|.+.....++++.+|..|+..+..+..... + . ....+++.+.+++.+++ +.+|..++.+|+.++..... .
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 5666666677788899999999988865443 1 1 34567899999999886 99999999999999974221 1
Q ss_pred hhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCh---hhhhhhHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhC
Q 010290 198 HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVG 273 (513)
Q Consensus 198 ~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~ 273 (513)
......+|.+..++.++++.+|..|+.+|+.++..-+. ......++|.+..++ .+.++.++..++.+|..++...+
T Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 22235789999999999999999999999999854221 111224688888888 67899999999999999986532
Q ss_pred CC--ccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH---HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhch
Q 010290 274 PE--PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 348 (513)
Q Consensus 274 ~~--~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 348 (513)
.. ......+|.+..++.+.++.++..|+.+|+.++...... .....++|.+..++.++++.+|..++.+++.++.
T Consensus 236 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 315 (528)
T 4b8j_A 236 QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT 315 (528)
T ss_dssp CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence 21 123568999999999999999999999999988642211 1223578899999999999999999999999986
Q ss_pred hhCHH---HHHHhHHHHHHHhcCCC-ChHHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHhhcCCChhHHHHHHHHH
Q 010290 349 ILGKD---ATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYI 421 (513)
Q Consensus 349 ~~~~~---~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l 421 (513)
..... .....++|.+..++.++ ++.+|..|+.+|+.++..-.. ..+...++|.+..++.+.+..+|..++.++
T Consensus 316 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL 395 (528)
T 4b8j_A 316 GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAI 395 (528)
T ss_dssp SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33221 11245789999999998 999999999999999763221 112347789999999999999999999999
Q ss_pred HHHHHHhChhhH----HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh----------hH----hhhhHHHHHhh
Q 010290 422 PLLASQLGVGFF----DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD----------WA----MQHIVPQVALI 483 (513)
Q Consensus 422 ~~l~~~~~~~~~----~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~----------~~----~~~i~~~L~~~ 483 (513)
+.++...+++.. ...+++.+..++.++++.|+..++.+|..++...... +. ....+..|..+
T Consensus 396 ~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L 475 (528)
T 4b8j_A 396 SNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENL 475 (528)
T ss_dssp HHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHG
T ss_pred HHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHH
Confidence 999876434322 2347899999999999999999999999998754321 11 13346777788
Q ss_pred hcCcch-HHHHHHHHHHHhc
Q 010290 484 KSSRNL-VLNSVLSLLKNAG 502 (513)
Q Consensus 484 ~~~~~~-~~r~~~~~~~~i~ 502 (513)
.++++. ++..+..++..+.
T Consensus 476 ~~~~~~~v~~~a~~il~~~~ 495 (528)
T 4b8j_A 476 QSHDNNEIYEKAVKILEAYW 495 (528)
T ss_dssp GGCSSHHHHHHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHHHHHC
Confidence 877765 4446667776654
No 29
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.85 E-value=9.1e-19 Score=177.65 Aligned_cols=468 Identities=10% Similarity=0.040 Sum_probs=314.1
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhhH
Q 010290 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLP 89 (513)
Q Consensus 11 i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~ 89 (513)
+..+.+.|+++|...|..+++.+..+ -..|.+- ..+.+-+.+ +.+.+.+.|+...-.+..+++. .++....+.+
T Consensus 36 ~~~ir~~l~~~~~~~k~~~l~kli~~-~~~G~d~--~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~--~~e~~~l~in 110 (618)
T 1w63_A 36 CAAIRSSFREEDNTYRCRNVAKLLYM-HMLGYPA--HFGQLECLKLIASQKFTDKRIGYLGAMLLLDE--RQDVHLLMTN 110 (618)
T ss_dssp HHHHHHHHTTTCTTTHHHHHHHHHHH-HHTTCCC--GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC--CHHHHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHH-HHcCCCC--cchHHHHHHHHcCCchHHHHHHHHHHHHHhCC--CcHHHHHHHH
Confidence 44455667777777777776666544 2334321 223333333 5678888998888887777662 2333345667
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHH
Q 010290 90 PLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYR 169 (513)
Q Consensus 90 ~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~ 169 (513)
.|.+-++++++.+|..|+.+++.++. ..+.+.++|.+.++..|+++.+|..|+.++..++...++ ....+++.+.
T Consensus 111 ~l~kDL~~~n~~vr~lAL~~L~~i~~----~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~-~v~~~~~~l~ 185 (618)
T 1w63_A 111 CIKNDLNHSTQFVQGLALCTLGCMGS----SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE-LMEMFLPATK 185 (618)
T ss_dssp HHHHHHSCSSSHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG-GGGGGGGGTT
T ss_pred HHHHhcCCCCHhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH-HHHHHHHHHH
Confidence 77777789999999999999999873 345567889999999999999999999999998876543 3446788888
Q ss_pred HHcCCCchHHHHHHHHhHHHHHHHhhh-hhhHHHHHHHHHHhhhc---------------cchhHHHHHHHHHHHhhccC
Q 010290 170 QLCQDDMPMVRRSAATNLGKFAATVEA-AHLKSEIMSIFEELTQD---------------DQDSVRLLAVEGCGALGKLL 233 (513)
Q Consensus 170 ~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~d---------------~~~~vr~~a~~~l~~l~~~~ 233 (513)
.++.|+++.|+..++.++..++..-+. ......++|.+.+.+.+ .++..+...+++++.++..-
T Consensus 186 ~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~ 265 (618)
T 1w63_A 186 NLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND 265 (618)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC
T ss_pred HHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC
Confidence 999999999999999999998764321 11223344544444432 46788888999998887642
Q ss_pred ChhhhhhhHHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHH
Q 010290 234 EPQDCVAHILPVIVNFS------QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKI 307 (513)
Q Consensus 234 ~~~~~~~~l~~~l~~~~------~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~ 307 (513)
+. ....+.+.+..++ ++.+..|...+++++..+.. .........+.+..++.++++++|..|+.+++.+
T Consensus 266 ~~--~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i 340 (618)
T 1w63_A 266 DD--SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS---ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKT 340 (618)
T ss_dssp HH--HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 21 2234455555443 23355678888877766421 1111123567778888999999999999999999
Q ss_pred HhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q 010290 308 CRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (513)
Q Consensus 308 ~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~ 387 (513)
.... ++ ......+.+...+.|++..+|..++.++..++..-.- +.+++.+...+.+.+.++|..++.+++.++.
T Consensus 341 ~~~~-p~-~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv----~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 341 VQTD-HN-AVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNI----RGMMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp HHHH-HH-HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSST----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HhhC-HH-HHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 8752 22 2344455666777899999999999999999865432 3456777777778889999999999999998
Q ss_pred hhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHH
Q 010290 388 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD--KVYSIRDAAANNVKRLAE 465 (513)
Q Consensus 388 ~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d--~~~~VR~~a~~~l~~l~~ 465 (513)
.+... ....++.+.+++.+....++..++..+..+....+. .....++.+...+.+ ....+...+++.+|..+.
T Consensus 415 k~~~~--~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~--l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~ 490 (618)
T 1w63_A 415 KYAPS--KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVE--MHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGD 490 (618)
T ss_dssp SSCCC--HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCS--THHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHH
T ss_pred HhCcc--HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChh--HHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHH
Confidence 76432 245677777777776655666666777777655322 234456666666654 223444578999999987
Q ss_pred HhChh---------hHhhhhHHHHHhhhc--CcchHHH-HHHHHHHHhcc
Q 010290 466 EFGPD---------WAMQHIVPQVALIKS--SRNLVLN-SVLSLLKNAGI 503 (513)
Q Consensus 466 ~~~~~---------~~~~~i~~~L~~~~~--~~~~~~r-~~~~~~~~i~~ 503 (513)
.+... .....+++.|..+++ ..+...| .++.++.+++.
T Consensus 491 ~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~ 540 (618)
T 1w63_A 491 LLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLST 540 (618)
T ss_dssp HHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHT
T ss_pred HhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 65320 011334555555543 2233334 66777766654
No 30
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.84 E-value=3e-18 Score=173.81 Aligned_cols=434 Identities=9% Similarity=0.068 Sum_probs=275.6
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhh
Q 010290 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLL 88 (513)
Q Consensus 10 ~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~ 88 (513)
.+..+.+.|+++++.+|..|+++++.+. .....+.++|.+.+ +.|.++.||+.|+.+++.+.+.. ++....++
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~----~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~--p~~v~~~~ 181 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMG----SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV--PELMEMFL 181 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC--GGGGGGGG
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--hHHHHHHH
Confidence 3556777788888888888888887773 33455677777777 77888889999998888887743 23445677
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHhhcChH-HHHhhHHHHHHHhhc---------------CCCcchhhhHHhhhHhh
Q 010290 89 PPLETLCTVEETCVRDKAVESLCRIGSQMREQ-DVVEHFIPLVKRLAA---------------GEWFTARVSSCGLFHVA 152 (513)
Q Consensus 89 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~l~~---------------d~~~~~R~~~~~~l~~~ 152 (513)
+.+..++.|.++.|+..|+.++..++..-+.. .....++|.+..... ..++-.+....++++.+
T Consensus 182 ~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l 261 (618)
T 1w63_A 182 PATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRIL 261 (618)
T ss_dssp GGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHh
Confidence 77778888888888888888888887642210 111223343332211 12344455566666666
Q ss_pred cCCCCHHHHHHHHHHHHHHc------CCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHH
Q 010290 153 YPSAPEALKTELRTIYRQLC------QDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGC 226 (513)
Q Consensus 153 ~~~~~~~~~~~l~~~l~~l~------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l 226 (513)
...- ++....+.+.+..++ ++.+..|...+++++..+.. .........+.+..++.++++++|..|+.++
T Consensus 262 ~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L 337 (618)
T 1w63_A 262 GRND-DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS---ESGLRVLAINILGRFLLNNDKNIRYVALTSL 337 (618)
T ss_dssp TTTC-HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHH
T ss_pred CCCC-HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 5542 222333444444433 23356777777777766432 1223334566777778888889999999999
Q ss_pred HHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHH
Q 010290 227 GALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTK 306 (513)
Q Consensus 227 ~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~ 306 (513)
+.++...+. ......+.+...+.|++..+|..+++.+..++.. ...+.+++.+...+.+.+.++|..++.+++.
T Consensus 338 ~~i~~~~p~--~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~----~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~ 411 (618)
T 1w63_A 338 LKTVQTDHN--AVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNG----NNIRGMMKELLYFLDSCEPEFKADCASGIFL 411 (618)
T ss_dssp HHHHHHHHH--HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS----SSTHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHhhCHH--HHHHHHHHHHHHccCCChhHHHHHHHHHHHHccc----ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888865322 2233455667777888888999888888777532 2134577777777778888999999999999
Q ss_pred HHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCC--CChHHHHHHHHHHHH
Q 010290 307 ICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQ 384 (513)
Q Consensus 307 ~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~ 384 (513)
++..+.+. ....++.+..++.+....++..++..+..+....+. .....++.+...+.+ ....+...+++.+|.
T Consensus 412 la~k~~~~--~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~--l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGE 487 (618)
T 1w63_A 412 AAEKYAPS--KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVE--MHAYTVQRLYKAILGDYSQQPLVQVAAWCIGE 487 (618)
T ss_dssp HHHSSCCC--HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCS--THHHHHHHHHHHHHHCCSCSHHHHHHHHHHHH
T ss_pred HHHHhCcc--HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChh--HHHHHHHHHHHHHhcccccHHHHHHHHHHHhh
Confidence 98866432 133345555555555555555555555555543221 123344555555543 233445568899998
Q ss_pred hhhhhhhh---------hhhhhHHHHHHHhhc--CCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHH
Q 010290 385 VNQVIGID---------LLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIR 453 (513)
Q Consensus 385 i~~~~~~~---------~~~~~l~~~l~~l~~--~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR 453 (513)
++..+... .....+.+.+..+++ ..+..+|..++.++..+....+.. .+.+...+-.+..|.+.+||
T Consensus 488 y~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~--~~~l~~~L~~~~~~~d~evr 565 (618)
T 1w63_A 488 YGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT--VNRIKKVVSIYGSSIDVELQ 565 (618)
T ss_dssp HHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC--HHHHHHHHHHHTTCSCHHHH
T ss_pred hHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch--HHHHHHHHHHhcCCCCHHHH
Confidence 87654220 011234555555554 467889999998888887765432 34455666667788889999
Q ss_pred HHHHHHHHHHHH
Q 010290 454 DAAANNVKRLAE 465 (513)
Q Consensus 454 ~~a~~~l~~l~~ 465 (513)
..|...+.-+..
T Consensus 566 dRA~~y~~ll~~ 577 (618)
T 1w63_A 566 QRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC
Confidence 999988776543
No 31
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.82 E-value=1.8e-17 Score=164.66 Aligned_cols=378 Identities=12% Similarity=0.086 Sum_probs=276.0
Q ss_pred hHHHHHhhccchhHHHHHHHHHHHHHHhhcCh----HHHHhhHHHHHHHhhc-CCCcchhhhHHhhhHhhcCCCCHH---
Q 010290 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRE----QDVVEHFIPLVKRLAA-GEWFTARVSSCGLFHVAYPSAPEA--- 159 (513)
Q Consensus 88 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~l~~-d~~~~~R~~~~~~l~~~~~~~~~~--- 159 (513)
++-+.+.+++++..++..|...+.++.+.-.. ..+..-++|.+.++.+ ++++.++..|+.++..++..-++.
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 34444455777888888888888887654221 3344557888888775 455788999999999988654443
Q ss_pred -HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh---hhhHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHhh
Q 010290 160 -LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQ-----DSVRLLAVEGCGALG 230 (513)
Q Consensus 160 -~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~-----~~vr~~a~~~l~~l~ 230 (513)
.....++.|..++++++..||+.++.+|+.++..... .......++.+..++...+ ..+...+..++..++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 2235789999999999999999999999999854221 1222345677777776543 235667778888877
Q ss_pred ccCCh---hhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCcHHHHHHHHHhH
Q 010290 231 KLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304 (513)
Q Consensus 231 ~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l 304 (513)
..-.+ -.....++|.+..++.+.++.++..++.+|..++..... ......++|.+..++.+++..++..++.++
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL 298 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence 64322 223456899999999999999999999999998742111 011245789999999999999999999999
Q ss_pred HHHHhhhChH---HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCH---HHHHHhHHHHHHHhcCCCChHHHHHH
Q 010290 305 TKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNI 378 (513)
Q Consensus 305 ~~~~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a 378 (513)
+.++..-+.. ......+|.+..++.+++..+|..++.+++.++..... ......++|.+..++.+.+..+|..|
T Consensus 299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 378 (510)
T 3ul1_B 299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA 378 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence 9987532111 22345678888999999999999999999999753222 12234688999999999999999999
Q ss_pred HHHHHHhhhhhhhhh----hhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh---Ch-hhHHH-----HHHHHHHHHh
Q 010290 379 ISKLDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GV-GFFDD-----KLGALCMQWL 445 (513)
Q Consensus 379 ~~~l~~i~~~~~~~~----~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~---~~-~~~~~-----~~~~~l~~~l 445 (513)
+.+|..++..-..+. ....+++.|..++.+++..++..+++++..+.+.. +. +.+.. ..+..+-.+.
T Consensus 379 a~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq 458 (510)
T 3ul1_B 379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ 458 (510)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHH
Confidence 999999876433222 23567899999999999999999999999887642 22 11211 2456677788
Q ss_pred cCchhHHHHHHHHHHHHHHH
Q 010290 446 KDKVYSIRDAAANNVKRLAE 465 (513)
Q Consensus 446 ~d~~~~VR~~a~~~l~~l~~ 465 (513)
.+++.+|++.|.+.+.+.+.
T Consensus 459 ~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 459 RHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp GCSSHHHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHHCC
Confidence 89999999999999877653
No 32
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.82 E-value=2.2e-17 Score=165.05 Aligned_cols=379 Identities=12% Similarity=0.080 Sum_probs=278.7
Q ss_pred hhHHHHHhhccchhHHHHHHHHHHHHHHhhcCh----HHHHhhHHHHHHHhhc-CCCcchhhhHHhhhHhhcCCCCHH--
Q 010290 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRE----QDVVEHFIPLVKRLAA-GEWFTARVSSCGLFHVAYPSAPEA-- 159 (513)
Q Consensus 87 l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~l~~-d~~~~~R~~~~~~l~~~~~~~~~~-- 159 (513)
.++-+...+..++...+..|+..+.++...-.. ..+...++|.+.++.. ++++.++..|+.++..++..-+..
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 345555556777888888899888887654221 3345558888887775 556889999999999998765444
Q ss_pred --HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhh---hhhhHHHHHHHHHHhhhccch-----hHHHHHHHHHHHh
Q 010290 160 --LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE---AAHLKSEIMSIFEELTQDDQD-----SVRLLAVEGCGAL 229 (513)
Q Consensus 160 --~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~l~~d~~~-----~vr~~a~~~l~~l 229 (513)
.....++.+..++.+++..+|..++.+|+.++..-. ........++.+..++.+++. .+...+..++..+
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 334578999999999999999999999999985321 112223456777777765432 3566777888887
Q ss_pred hccCCh---hhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCcHHHHHHHHHh
Q 010290 230 GKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGK 303 (513)
Q Consensus 230 ~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d~~~~vr~~a~~~ 303 (513)
+..-.+ -.....++|.+..++.++++.++..++.+|..++..... ......++|.+..++.++++.++..|+.+
T Consensus 237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~a 316 (529)
T 3tpo_A 237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 316 (529)
T ss_dssp HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHH
Confidence 765322 223456899999999999999999999999998743111 11134578999999999999999999999
Q ss_pred HHHHHhhhCh---HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCH---HHHHHhHHHHHHHhcCCCChHHHHH
Q 010290 304 VTKICRILNP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLN 377 (513)
Q Consensus 304 l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~ 377 (513)
++.++..-+. .......++.+..++.+++..+|..++++++.++..... ......++|.+..++.+++..+|..
T Consensus 317 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~ 396 (529)
T 3tpo_A 317 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKA 396 (529)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHH
Confidence 9998753211 122345678889999999999999999999999753221 1223468999999999999999999
Q ss_pred HHHHHHHhhhhhhhhh----hhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh---Ch-hhHHH-----HHHHHHHHH
Q 010290 378 IISKLDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GV-GFFDD-----KLGALCMQW 444 (513)
Q Consensus 378 a~~~l~~i~~~~~~~~----~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~---~~-~~~~~-----~~~~~l~~~ 444 (513)
|+.+|..++..-..+. ....+++.|..++.+++..++..++.++..+.... +. ..+.. ..+..+..+
T Consensus 397 A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L 476 (529)
T 3tpo_A 397 AAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL 476 (529)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHH
Confidence 9999999876433322 23467899999999999999999999999887542 21 22221 135556667
Q ss_pred hcCchhHHHHHHHHHHHHHHH
Q 010290 445 LKDKVYSIRDAAANNVKRLAE 465 (513)
Q Consensus 445 l~d~~~~VR~~a~~~l~~l~~ 465 (513)
..+++.+|++.|.+.+...+.
T Consensus 477 q~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 477 QRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp GGCSSHHHHHHHHHHHHHHC-
T ss_pred HcCCCHHHHHHHHHHHHHHCC
Confidence 889999999999999877654
No 33
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.81 E-value=9.9e-18 Score=166.52 Aligned_cols=339 Identities=12% Similarity=0.072 Sum_probs=240.3
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhC-h--H-hhhhhhhhhhhh-cc-CCchHHHHHHHHHhhcccccccCc--
Q 010290 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALG-E--E-RTRKELIPFLSE-NN-DDDDEVLLAMAEELGVFIPYVGGL-- 81 (513)
Q Consensus 10 ~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~-~--~-~~~~~l~~~l~~-~~-~~~~~vr~~~~~~l~~~~~~~~~~-- 81 (513)
.|..+++.++|+|+..+..|...+-.+.+.-. | + -+..-.+|.|.+ +. +++++++..++.+|++++......
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 48999999999999999999988876653221 1 1 123346888888 54 567899999999999998632211
Q ss_pred -hhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcCh---HHHHhhHHHHHHHhhcCCCcc-----hhhhHHhhhHhh
Q 010290 82 -EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE---QDVVEHFIPLVKRLAAGEWFT-----ARVSSCGLFHVA 152 (513)
Q Consensus 82 -~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~l~~d~~~~-----~R~~~~~~l~~~ 152 (513)
......+|.|..++.+++..+|..|+.+|+.++..-+. .......++.+..+..+.+.. ....++..+..+
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 12234688888999999999999999999999875322 122333566666666554322 234556666666
Q ss_pred cCCCCH----HHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh---hhhHHHHHHHHHHhhhccchhHHHHHHHH
Q 010290 153 YPSAPE----ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEG 225 (513)
Q Consensus 153 ~~~~~~----~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~ 225 (513)
+..-.. .....+++.+..++.++++.++..++.+|..++..-.. ......++|.+..++.+++..++..++.+
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a 297 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence 654322 25578899999999999999999999999998854321 11223467888889999999999999999
Q ss_pred HHHhhccCChh---hhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCcHHHHHH
Q 010290 226 CGALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIA 299 (513)
Q Consensus 226 l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d~~~~vr~~ 299 (513)
++.++..-+.. .....+++.+..++.+++..+|..++.+|++++..-.. ......++|.+..++.+.+..+|..
T Consensus 298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~ 377 (510)
T 3ul1_B 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 377 (510)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHH
T ss_pred HHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHH
Confidence 99987653321 11234677788888899999999999999998642111 1112457888888898888999999
Q ss_pred HHHhHHHHHhhhChHH----HHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhch
Q 010290 300 AAGKVTKICRILNPEL----AIQHILPCVKELSSDSSQHVRSALATVIMGMAP 348 (513)
Q Consensus 300 a~~~l~~~~~~~~~~~----~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 348 (513)
|+.+|..++.....+. .....++.+..++.++++.++..++.++..+.+
T Consensus 378 Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 378 AAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999988876544332 123456777777777777787777777766653
No 34
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.81 E-value=2e-17 Score=165.28 Aligned_cols=340 Identities=12% Similarity=0.075 Sum_probs=243.1
Q ss_pred CcHHHHHHHhcCccHHHHHHHhhcHHHHHHHhC-h---Hhhhhhhhhhhhh-c-cCCchHHHHHHHHHhhcccccccCc-
Q 010290 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALG-E---ERTRKELIPFLSE-N-NDDDDEVLLAMAEELGVFIPYVGGL- 81 (513)
Q Consensus 9 ~~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~-~---~~~~~~l~~~l~~-~-~~~~~~vr~~~~~~l~~~~~~~~~~- 81 (513)
..+..+++.++|+|+..+..|+..+-.+...-. | .-....++|.+.+ + .++++.++..++.+|+.++......
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 358899999999999999999988876643221 1 1234457888888 5 4567999999999999998743211
Q ss_pred --hhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcCh--H-HHHhhHHHHHHHhhcCCCc-----chhhhHHhhhHh
Q 010290 82 --EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE--Q-DVVEHFIPLVKRLAAGEWF-----TARVSSCGLFHV 151 (513)
Q Consensus 82 --~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--~-~~~~~~~~~l~~l~~d~~~-----~~R~~~~~~l~~ 151 (513)
......+|.|..++.+++..+|..|+.+|+.++..-+. + ......++.+..+..+.+. .....++..+..
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 12234688888999999999999999999999865321 1 2233356677776655432 223455666666
Q ss_pred hcCCCCH----HHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh---hhhHHHHHHHHHHhhhccchhHHHHHHH
Q 010290 152 AYPSAPE----ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVE 224 (513)
Q Consensus 152 ~~~~~~~----~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~ 224 (513)
++..-.+ .....+++.+..++.++++.++..++.+|..++..... ......++|.+..++.+++..++..++.
T Consensus 236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~ 315 (529)
T 3tpo_A 236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 315 (529)
T ss_dssp HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHH
Confidence 6654322 25578899999999999999999999999998864321 1123357788889999999999999999
Q ss_pred HHHHhhccCChh---hhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCcHHHHH
Q 010290 225 GCGALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRI 298 (513)
Q Consensus 225 ~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d~~~~vr~ 298 (513)
+++.++..-+.. .....+++.+..++.++++.+|..++.+|++++..-.. ......++|.+..++.+.+..+|.
T Consensus 316 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 395 (529)
T 3tpo_A 316 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK 395 (529)
T ss_dssp HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHH
Confidence 999988643221 12234678888889999999999999999998742111 111245788888888888899999
Q ss_pred HHHHhHHHHHhhhChHH----HHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhch
Q 010290 299 AAAGKVTKICRILNPEL----AIQHILPCVKELSSDSSQHVRSALATVIMGMAP 348 (513)
Q Consensus 299 ~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 348 (513)
.|+.+|..++.....+. ....++|.|..++.++++.++..++.+|..+.+
T Consensus 396 ~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 396 AAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999988876544432 123456777777777777777777777766653
No 35
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.80 E-value=4e-18 Score=156.10 Aligned_cols=252 Identities=20% Similarity=0.163 Sum_probs=186.4
Q ss_pred HHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHH
Q 010290 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244 (513)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 244 (513)
++.+...++|+++.+|..++.+|+.+.. +..+|.+.+++.|+++.+|..|+.+++.+... ......+++
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~---~~~~~~l~~ 93 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC---KKCEDNVFN 93 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC---TTTHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc---cccchHHHH
Confidence 5677788889999999999999988752 34667777888999999999999999887642 112334666
Q ss_pred HHHH-hcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhh
Q 010290 245 VIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPC 323 (513)
Q Consensus 245 ~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~ 323 (513)
.+.+ +.+|+++.||..++.+|+.+....+ ...+..++.+...++|+++.||..|+.+|+.+.. +..+|.
T Consensus 94 ~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~~ 163 (280)
T 1oyz_A 94 ILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIPL 163 (280)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHHH
Confidence 6653 5678899999999999999875321 1134678888888899999999999988887653 235677
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Q 010290 324 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 403 (513)
Q Consensus 324 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~ 403 (513)
+..++.|+++.||..++.+++.+... .+..+|.+.++++|+++.||..++.+|+.+.. +..++.+.
T Consensus 164 L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--------~~~~~~L~ 229 (280)
T 1oyz_A 164 LINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSVLC 229 (280)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhccC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--------HhhHHHHH
Confidence 77778888899999999988877421 13457788888888889999999988888752 45677777
Q ss_pred HhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Q 010290 404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD-KVYSIRDAAANNVK 461 (513)
Q Consensus 404 ~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d-~~~~VR~~a~~~l~ 461 (513)
..++|++ +|..++.+++.+.. . ..+|.+..++.+ ++.+++..+++.+.
T Consensus 230 ~~l~d~~--vr~~a~~aL~~i~~----~----~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 230 DELKKNT--VYDDIIEAAGELGD----K----TLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHTSSS--CCHHHHHHHHHHCC----G----GGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHhcCcc--HHHHHHHHHHhcCc----h----hhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 7777754 77888888877642 1 367778887754 56677777777664
No 36
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.79 E-value=6e-18 Score=154.92 Aligned_cols=252 Identities=20% Similarity=0.209 Sum_probs=195.7
Q ss_pred HHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHH
Q 010290 204 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVP 283 (513)
Q Consensus 204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~ 283 (513)
++.+...+.|+++.+|..|+.+|+.+.. +..++.+...+.|+++.+|..++.+|+.+.. .......+++
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~---~~~~~~~l~~ 93 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI---CKKCEDNVFN 93 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC---CTTTHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc---ccccchHHHH
Confidence 4566678899999999999999998862 4578888899999999999999999988642 1111234556
Q ss_pred HHH-HhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHH
Q 010290 284 AYV-RLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPI 362 (513)
Q Consensus 284 ~l~-~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 362 (513)
.+. .+++|+++.||..++.+|+.+....+ ...+.++|.+...++|+++.||..++.+++.+.. +..+|.
T Consensus 94 ~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~~ 163 (280)
T 1oyz_A 94 ILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIPL 163 (280)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHHH
Confidence 665 35789999999999999999875321 1234567888888999999999999999998753 346888
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHH
Q 010290 363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM 442 (513)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~ 442 (513)
+..+++|+++.||..++.+|+.+... .+.+++.+..+++|+++.+|..++.+++.+. . +..+|.+.
T Consensus 164 L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----~----~~~~~~L~ 229 (280)
T 1oyz_A 164 LINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK----D----KRVLSVLC 229 (280)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT----C----GGGHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhccC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC----C----HhhHHHHH
Confidence 99999999999999999999987421 2567888999999999999999999998775 2 23678888
Q ss_pred HHhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhhcCc--chHHHHHHHHHHH
Q 010290 443 QWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKSSR--NLVLNSVLSLLKN 500 (513)
Q Consensus 443 ~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~~~--~~~~r~~~~~~~~ 500 (513)
..+.|++ ||..++.+++.+ |. ...+|.|..++++. +...+.++..+++
T Consensus 230 ~~l~d~~--vr~~a~~aL~~i----~~----~~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 230 DELKKNT--VYDDIIEAAGEL----GD----KTLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp HHHTSSS--CCHHHHHHHHHH----CC----GGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred HHhcCcc--HHHHHHHHHHhc----Cc----hhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 8898865 999999999987 43 36788888887643 3344455665554
No 37
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.79 E-value=1.7e-16 Score=160.32 Aligned_cols=459 Identities=11% Similarity=0.045 Sum_probs=237.7
Q ss_pred HHHHHHhcC---ccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhh
Q 010290 12 AVLIDELKN---DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVL 87 (513)
Q Consensus 12 ~~l~~~l~~---~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l 87 (513)
..+.+.|++ .|...|..+++.+..+ -.+|.+- ..+.+.+.+ +.+++.+.|+.+.-.+..+++. .++....+
T Consensus 38 ~~ir~~~~~~~~~~~~~k~~~l~Kli~l-~~~G~d~--s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~--~~e~~~L~ 112 (621)
T 2vgl_A 38 ANIRSKFKGDKALDGYSKKKYVCKLLFI-FLLGHDI--DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNS--NSELIRLI 112 (621)
T ss_dssp HHHHHHHHSSSCCCHHHHHHHHHHHHHH-HHHSCCC--CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCC--CHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHH-HHcCCCC--chhHHHHHHHhcCCCHHHHHHHHHHHHHHccC--CcHHHHHH
Confidence 344444543 2455555555554433 2233221 122222233 4455555666555555555542 12222333
Q ss_pred hHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhh--cCCCcchhhhHHhhhHhhcCCCCHHHH-HHH
Q 010290 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLA--AGEWFTARVSSCGLFHVAYPSAPEALK-TEL 164 (513)
Q Consensus 88 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~--~d~~~~~R~~~~~~l~~~~~~~~~~~~-~~l 164 (513)
.+.+.+-++++++.+|..|+.+++.+.. + .+.+.+.|.+.++. .|.++.+|..|+.++..+++..++... +.+
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~~---~-e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~ 188 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVGS---R-EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDW 188 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHCC---H-HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccCC---H-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhH
Confidence 4444444455566666666666555543 2 23344555555555 555666666666655555553322211 245
Q ss_pred HHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhh--hhHHHHHHHHHHhhhcc-------------ch-------------
Q 010290 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDD-------------QD------------- 216 (513)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~-------------~~------------- 216 (513)
.+.+.++++|+++.|+.+++..+..++..-+.. ...+.++..+.+++.+. ++
T Consensus 189 ~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~ 268 (621)
T 2vgl_A 189 TSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCY 268 (621)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGS
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHh
Confidence 555555555666666666665555555432210 12222222222221100 12
Q ss_pred ---------------------------------------hHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHH
Q 010290 217 ---------------------------------------SVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRV 257 (513)
Q Consensus 217 ---------------------------------------~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~v 257 (513)
.|...++.++..+. +.........+.+..++.+.++.+
T Consensus 269 ~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~ni 345 (621)
T 2vgl_A 269 PPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRETNL 345 (621)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcch
Confidence 23333333333322 122233345556666666677777
Q ss_pred HHHHHHHHHHHHHHhCCCccccchHHHHHHhcC-CCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHH
Q 010290 258 RYMVANQLYELCEAVGPEPTRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVR 336 (513)
Q Consensus 258 r~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr 336 (513)
|..++..+..++...+.........+.++.+++ |++..||..++..+..++.. ...+.++..+...+.+.+...|
T Consensus 346 ry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~----~Nv~~Iv~eL~~yl~~~d~~~~ 421 (621)
T 2vgl_A 346 RYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR----SNAQQIVAEMLSYLETADYSIR 421 (621)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh----hhHHHHHHHHHHHHHhcCHHHH
Confidence 777777777776443211112344566666666 77777777777776665432 2234555555555566677777
Q ss_pred HHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCCh--hHH
Q 010290 337 SALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW--RVR 414 (513)
Q Consensus 337 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~--~vR 414 (513)
..++..++.++..+.... ...+..+.+++.+....+...++..+..++.... ......+..+.+.+.++.. .+-
T Consensus 422 ~~~v~~I~~la~k~~~~~--~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~--~~~~~~~~~l~~~l~~~~~~~~li 497 (621)
T 2vgl_A 422 EEIVLKVAILAEKYAVDY--TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRD--DVQGYAAKTVFEALQAPACHENLV 497 (621)
T ss_dssp HHHHHHHHHHHHHHCSST--HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGC--SCHHHHHHHHHHHHTSSSCCHHHH
T ss_pred HHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCh--hHHHHHHHHHHHHHcCccchHHHH
Confidence 777777777776554321 2345556666655444444444455554443221 1234455556666666543 344
Q ss_pred HHHHHHHHHHHHHhChhh--HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhhc--CcchH
Q 010290 415 LAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKS--SRNLV 490 (513)
Q Consensus 415 ~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~~--~~~~~ 490 (513)
..+++.+|..+..+.... ....++..+...+.+.++.||..++.++.++....++ ..+.+...|..... |.++-
T Consensus 498 ~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~d~e 575 (621)
T 2vgl_A 498 KVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE--VKATIQDVLRSDSQLKNADVE 575 (621)
T ss_dssp HHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHSSHHHHSCSSHH
T ss_pred HHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhcCCCCCHH
Confidence 556688888866543211 0123556677777888999999999999999887643 22444444444444 66553
Q ss_pred HH
Q 010290 491 LN 492 (513)
Q Consensus 491 ~r 492 (513)
.|
T Consensus 576 vr 577 (621)
T 2vgl_A 576 LQ 577 (621)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 38
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.78 E-value=4.4e-16 Score=157.30 Aligned_cols=435 Identities=11% Similarity=0.066 Sum_probs=288.4
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-c--cCCchHHHHHHHHHhhcccccccCchhhh--
Q 010290 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-N--NDDDDEVLLAMAEELGVFIPYVGGLEYAN-- 85 (513)
Q Consensus 11 i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~--~~~~~~vr~~~~~~l~~~~~~~~~~~~~~-- 85 (513)
+..+.+.|+++++.+|-.|++.++.+. .....+.+.|.+.+ + .|.++.||+.|+.++.++.+..+ +...
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~----~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~~~~ 186 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVG----SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLVPMG 186 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHC----CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGCCCC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccC----CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhcCch
Confidence 566778899999999999999998773 34567788999988 7 88999999999999999888433 2333
Q ss_pred hhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChH--HHHhhHHHHHHHhhcCC-------------CcchhhhHHhhhH
Q 010290 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ--DVVEHFIPLVKRLAAGE-------------WFTARVSSCGLFH 150 (513)
Q Consensus 86 ~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~l~~d~-------------~~~~R~~~~~~l~ 150 (513)
.+.+.+..++.|.++.|+..|+.++..++..-+.. ...+.+...+.++..+. ++-.+....+++.
T Consensus 187 ~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~ 266 (621)
T 2vgl_A 187 DWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQ 266 (621)
T ss_dssp SCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGG
T ss_pred hHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHH
Confidence 68888888999999999999999999998764321 11222334444443221 2334555566666
Q ss_pred hhcCCCCHHHHHHHHH---HHHHHcCC-C--------c--hHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccch
Q 010290 151 VAYPSAPEALKTELRT---IYRQLCQD-D--------M--PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQD 216 (513)
Q Consensus 151 ~~~~~~~~~~~~~l~~---~l~~l~~d-~--------~--~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~ 216 (513)
.+...-+++....+.+ .+...+.+ + + ..|-..+++++-.+. +.........+.+..++.+.++
T Consensus 267 ~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~ 343 (621)
T 2vgl_A 267 CYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRET 343 (621)
T ss_dssp GSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCH
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCc
Confidence 5554433443443333 33332222 1 2 256555666555443 2334556677788888888899
Q ss_pred hHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHH
Q 010290 217 SVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE 295 (513)
Q Consensus 217 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~ 295 (513)
++|..++.++..++...+.........+.+...+. |++..+|..++..+..++.. .....++..+...+.+.+.+
T Consensus 344 niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~----~Nv~~Iv~eL~~yl~~~d~~ 419 (621)
T 2vgl_A 344 NLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR----SNAQQIVAEMLSYLETADYS 419 (621)
T ss_dssp HHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHCCHH
T ss_pred chHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh----hhHHHHHHHHHHHHHhcCHH
Confidence 99999999999999776532334445566666677 88999999999888887632 22356778888888888999
Q ss_pred HHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCC--hH
Q 010290 296 VRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF--PD 373 (513)
Q Consensus 296 vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~--~~ 373 (513)
.|..++.+++.++..+.+.. ...+..+..++.+....+...++..+..+....+. ...+....+.+.+.|+. ..
T Consensus 420 ~~~~~v~~I~~la~k~~~~~--~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~--~~~~~~~~l~~~l~~~~~~~~ 495 (621)
T 2vgl_A 420 IREEIVLKVAILAEKYAVDY--TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDD--VQGYAAKTVFEALQAPACHEN 495 (621)
T ss_dssp HHHHHHHHHHHHHHHHCSST--HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCS--CHHHHHHHHHHHHTSSSCCHH
T ss_pred HHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChh--HHHHHHHHHHHHHcCccchHH
Confidence 99999999999988765321 22333334444333333444444444444432221 22344556677777764 35
Q ss_pred HHHHHHHHHHHhhhhhhhhh-h-hhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhc--Cch
Q 010290 374 VRLNIISKLDQVNQVIGIDL-L-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK--DKV 449 (513)
Q Consensus 374 vr~~a~~~l~~i~~~~~~~~-~-~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~--d~~ 449 (513)
+-..+++.+|+.+..+.... . ...++..+...+.+.+..+|..++.++..+....+. ..+.+...+-.... |.+
T Consensus 496 li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~d 573 (621)
T 2vgl_A 496 LVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE--VKATIQDVLRSDSQLKNAD 573 (621)
T ss_dssp HHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHSSHHHHSCSS
T ss_pred HHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhcCCCCC
Confidence 66677799999877654321 1 123455666666778899999999999998766432 23334444444555 999
Q ss_pred hHHHHHHHHHHHHHH
Q 010290 450 YSIRDAAANNVKRLA 464 (513)
Q Consensus 450 ~~VR~~a~~~l~~l~ 464 (513)
++||..|...+.-+.
T Consensus 574 ~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 574 VELQQRAVEYLRLST 588 (621)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999877653
No 39
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.77 E-value=5.5e-15 Score=158.45 Aligned_cols=464 Identities=11% Similarity=0.044 Sum_probs=288.0
Q ss_pred ccHHHHHHHhhcHHHHHHHh---------ChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhhHH
Q 010290 21 DDIQLRLNSIRRLSTIARAL---------GEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPP 90 (513)
Q Consensus 21 ~d~~~r~~a~~~l~~i~~~~---------~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~ 90 (513)
.+..+|..|+-.+......- -++..+..+...+.+ +.+....+|..++.++..+++.-.. ..|+.+++.
T Consensus 49 ~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~ 127 (960)
T 1wa5_C 49 LPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSD 127 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHH
Confidence 46788999988887665431 122333344444444 3344588999999999998875332 568999999
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHhhcCh-----HH---H---HhhHHH----HHHHh---hcCCCc---chh------h
Q 010290 91 LETLCTVEETCVRDKAVESLCRIGSQMRE-----QD---V---VEHFIP----LVKRL---AAGEWF---TAR------V 143 (513)
Q Consensus 91 l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-----~~---~---~~~~~~----~l~~l---~~d~~~---~~R------~ 143 (513)
+.+.+++++...+..++.++..+++.... +. + .....| ++... ..+... ..| .
T Consensus 128 L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 207 (960)
T 1wa5_C 128 LASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLL 207 (960)
T ss_dssp HHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 98888888888899999999999986542 11 1 111222 22111 233221 122 2
Q ss_pred hHHhhhHhhc-CCCCHH---HHHHHHHHHHHHcCC-----------C----chHHHHHHHHhHHHHHHHhhhh--hhHHH
Q 010290 144 SSCGLFHVAY-PSAPEA---LKTELRTIYRQLCQD-----------D----MPMVRRSAATNLGKFAATVEAA--HLKSE 202 (513)
Q Consensus 144 ~~~~~l~~~~-~~~~~~---~~~~l~~~l~~l~~d-----------~----~~~vr~~a~~~l~~l~~~~~~~--~~~~~ 202 (513)
.++.++..+. ...+.. ....+.+.+.+.+.. . .+.+|+.+++++..+....+.. .+.+.
T Consensus 208 ~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~ 287 (960)
T 1wa5_C 208 VLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINE 287 (960)
T ss_dssp HHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2444444332 233432 234555666654421 1 1468999999999888766542 22344
Q ss_pred HHHHHHHhhh-----ccchhHHHHHHHHHHHhhcc------CChhhhhhhHH-HHHHHhc--------------------
Q 010290 203 IMSIFEELTQ-----DDQDSVRLLAVEGCGALGKL------LEPQDCVAHIL-PVIVNFS-------------------- 250 (513)
Q Consensus 203 l~~~l~~l~~-----d~~~~vr~~a~~~l~~l~~~------~~~~~~~~~l~-~~l~~~~-------------------- 250 (513)
+++.+.+.+. ..++.++..+++.+..+++. +....+...++ +.+...+
T Consensus 288 ~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~ 367 (960)
T 1wa5_C 288 FIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRR 367 (960)
T ss_dssp HHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHh
Confidence 5555555554 34568888899988877643 11112233333 2222211
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC------CCcHHHHHHHHHhHHHHHhhh-----ChH--
Q 010290 251 ---QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLR------DNEAEVRIAAAGKVTKICRIL-----NPE-- 314 (513)
Q Consensus 251 ---~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~------d~~~~vr~~a~~~l~~~~~~~-----~~~-- 314 (513)
.+..+..|.++...+..++..++ +...+.+++.+.+.+. ++++..|.+|+.+++.+.... +..
T Consensus 368 d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~ 446 (960)
T 1wa5_C 368 DLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSST 446 (960)
T ss_dssp HHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCB
T ss_pred ccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccc
Confidence 12234688899999999998877 3334556666666665 667899999999999997642 111
Q ss_pred ----HHHHhhhhhhhhhcCCC---cHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q 010290 315 ----LAIQHILPCVKELSSDS---SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (513)
Q Consensus 315 ----~~~~~l~~~l~~~~~d~---~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~ 387 (513)
.+.+.+...+...+.++ ++.+|..++++++.++..+.++ ....+++.+.+.+.|++..||..|+.++..+++
T Consensus 447 ~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 447 NNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp CTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 12121222223333555 8999999999999999887644 466788999999999999999999999999887
Q ss_pred hhh----------hh---hhhhhHHHHHHHhhcCCC-----hhHHHHHHHHHHHHHHHhChhh--HHHHHHHHHHHHh--
Q 010290 388 VIG----------ID---LLSQSLLPAIVELAEDRH-----WRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL-- 445 (513)
Q Consensus 388 ~~~----------~~---~~~~~l~~~l~~l~~~~~-----~~vR~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l-- 445 (513)
... .+ .+.+.+++.+..+++... ......++.+++.++...+.+. +...+++.+...+
T Consensus 526 ~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~ 605 (960)
T 1wa5_C 526 IRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTI 605 (960)
T ss_dssp CBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 422 22 233556666666665531 1133577888888887766542 3344555555433
Q ss_pred --c-CchhHHHHHHHHHHHHHHHHhChhhH---hhhhHHHHHhhhcCc
Q 010290 446 --K-DKVYSIRDAAANNVKRLAEEFGPDWA---MQHIVPQVALIKSSR 487 (513)
Q Consensus 446 --~-d~~~~VR~~a~~~l~~l~~~~~~~~~---~~~i~~~L~~~~~~~ 487 (513)
. ..++..+..++++++.++...+++.. .+.++|.+...++..
T Consensus 606 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~ 653 (960)
T 1wa5_C 606 MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSED 653 (960)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhh
Confidence 2 34567888899999999998665432 367888887766543
No 40
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.73 E-value=2.1e-14 Score=153.96 Aligned_cols=451 Identities=14% Similarity=0.091 Sum_probs=284.8
Q ss_pred HHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccC----chh-----
Q 010290 14 LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG----LEY----- 83 (513)
Q Consensus 14 l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~----~~~----- 83 (513)
+++.+.+++..+|..+...+..++....| ..|++++|.+.+ +.++++..+..+..++..+++.... +..
T Consensus 90 ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~ 168 (960)
T 1wa5_C 90 IVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIK 168 (960)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHH
Confidence 55666667789999999999999988777 469999999999 7667777788888888877764321 111
Q ss_pred --hhhh----hHHHHHh---hccchh---HHH------HHHHHHHHHHHhhcChHHHH---hhHHHHHHHhhcC------
Q 010290 84 --ANVL----LPPLETL---CTVEET---CVR------DKAVESLCRIGSQMREQDVV---EHFIPLVKRLAAG------ 136 (513)
Q Consensus 84 --~~~l----~~~l~~l---~~~~~~---~vR------~~a~~~l~~l~~~~~~~~~~---~~~~~~l~~l~~d------ 136 (513)
.... +.++..+ +.+.+. .+| ..+++++..+...--++... ...++.+.++...
T Consensus 169 ~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~ 248 (960)
T 1wa5_C 169 LVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLE 248 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 1111 2222222 333211 133 23445554433221122222 2234554443321
Q ss_pred ----CC-----cchhhhHHhhhHhhcCCCCHH---HHHHHHHHHHHHcC-----CCchHHHHHHHHhHHHHHHHhh----
Q 010290 137 ----EW-----FTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQ-----DDMPMVRRSAATNLGKFAATVE---- 195 (513)
Q Consensus 137 ----~~-----~~~R~~~~~~l~~~~~~~~~~---~~~~l~~~l~~l~~-----d~~~~vr~~a~~~l~~l~~~~~---- 195 (513)
+. +.+|..++.++..+.+..++. +...+++.+.+.+. ..+..++..+++.+..+++.-.
T Consensus 249 ~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~ 328 (960)
T 1wa5_C 249 DPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEI 328 (960)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGG
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHH
Confidence 11 345777888888777666554 45566666666653 3466788888888877764211
Q ss_pred --hhhhHHHHH-HHHHHhhh-----------------------ccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHh
Q 010290 196 --AAHLKSEIM-SIFEELTQ-----------------------DDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNF 249 (513)
Q Consensus 196 --~~~~~~~l~-~~l~~l~~-----------------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 249 (513)
...+...++ +.+...+. +..+..|.+|..++..++..++ +...+.+++.+.+.
T Consensus 329 ~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~ 407 (960)
T 1wa5_C 329 FNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGF 407 (960)
T ss_dssp GCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHH
Confidence 012233333 33322210 1223689999999999999887 45566677777766
Q ss_pred cC------CCCHHHHHHHHHHHHHHHHHhC-CC-cccc-----chHHHH----HHhcCCC---cHHHHHHHHHhHHHHHh
Q 010290 250 SQ------DKSWRVRYMVANQLYELCEAVG-PE-PTRS-----DVVPAY----VRLLRDN---EAEVRIAAAGKVTKICR 309 (513)
Q Consensus 250 ~~------d~~~~vr~~~~~~l~~l~~~~~-~~-~~~~-----~ll~~l----~~~l~d~---~~~vr~~a~~~l~~~~~ 309 (513)
+. +.+|+.|.+++.+++.++.... .. .... ++.+.+ ...+.|+ .+-||..|++.++++++
T Consensus 408 l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~ 487 (960)
T 1wa5_C 408 VDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRN 487 (960)
T ss_dssp HHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGG
T ss_pred HHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHh
Confidence 65 6789999999999999975421 11 1111 444443 3345666 89999999999999998
Q ss_pred hhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhC----------HHH---HHHhHHHHHHHhcCCCC---h-
Q 010290 310 ILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG----------KDA---TIEQLLPIFLSLLKDEF---P- 372 (513)
Q Consensus 310 ~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----------~~~---~~~~l~~~l~~~l~d~~---~- 372 (513)
.+.+ .....++|.+...+.|++..||..++.++..++.... .+. +.+.+++.+.++++... .
T Consensus 488 ~~~~-~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~ 566 (960)
T 1wa5_C 488 QLTK-AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEK 566 (960)
T ss_dssp GSCH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHH
T ss_pred hCCH-HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCc
Confidence 8754 4567788888888889999999999999999887422 222 23556666677776531 1
Q ss_pred -HHHHHHHHHHHHhhhhhhhhh--hhhhHHHHHHHhh----cC-CChhHHHHHHHHHHHHHHHhChhh---HHHHHHHHH
Q 010290 373 -DVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELA----ED-RHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALC 441 (513)
Q Consensus 373 -~vr~~a~~~l~~i~~~~~~~~--~~~~l~~~l~~l~----~~-~~~~vR~~~~~~l~~l~~~~~~~~---~~~~~~~~l 441 (513)
.....+..+++.++...+.+. +...+++.+...+ ++ .+...+..++++++.++...+++. +.+.++|.+
T Consensus 567 ~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~ 646 (960)
T 1wa5_C 567 LAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTF 646 (960)
T ss_dssp HTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 134567778887777655321 2234444444333 33 356788889999999988755443 456788998
Q ss_pred HHHhcCchhHHHHHHHHHHHHHHHHh
Q 010290 442 MQWLKDKVYSIRDAAANNVKRLAEEF 467 (513)
Q Consensus 442 ~~~l~d~~~~VR~~a~~~l~~l~~~~ 467 (513)
...+......+...+...++.+....
T Consensus 647 ~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 647 LTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 88887766778888888888887664
No 41
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.72 E-value=4.4e-16 Score=136.00 Aligned_cols=190 Identities=19% Similarity=0.191 Sum_probs=148.9
Q ss_pred hhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHh
Q 010290 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQH 319 (513)
Q Consensus 240 ~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 319 (513)
+..++.+...+.|+++.+|..++..|+.+. .+..+|.+..+++|+++.||..|+.+|+.+.. +.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~ 81 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER 81 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GG
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence 446777888888999999999998888864 24678888889999999999999998888753 34
Q ss_pred hhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHH
Q 010290 320 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399 (513)
Q Consensus 320 l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~ 399 (513)
.++.+...+.|+++.+|..++.+++.+.. ...+|.+.++++|+++.||..++.+|+.+.. +..+
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~ 145 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV 145 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHH
Confidence 55777777889999999999999888753 2356888888999999999999999988743 4567
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh
Q 010290 400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP 469 (513)
Q Consensus 400 ~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~ 469 (513)
+.+..+++|+++.+|..++.+++.+.. +..++.+..+++|+++.||..|.++|+.+....+.
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~ 207 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNHH 207 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-------
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC
Confidence 888888889999999999999887742 34778888888899999999999999888765543
No 42
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.71 E-value=6.3e-16 Score=137.92 Aligned_cols=188 Identities=15% Similarity=0.154 Sum_probs=142.7
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhCh---HHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHHhchhhCHHH
Q 010290 279 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSS-DSSQHVRSALATVIMGMAPILGKDA 354 (513)
Q Consensus 279 ~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~ 354 (513)
..+.+.+.+.++|.++..|.+|+..|..+++..+. ..+ ..+++.+...+. |++..||..++.+++.++..++..+
T Consensus 14 ~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~ 92 (242)
T 2qk2_A 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF 92 (242)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred ccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH
Confidence 34444555566666666666666666666654211 112 345566666664 7777777777777777777766543
Q ss_pred --HHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChh-
Q 010290 355 --TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG- 431 (513)
Q Consensus 355 --~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~- 431 (513)
+...++|.+...++|+...||.++..++..++...+. +.++|.+...+++++|.+|..++.+++.+....+++
T Consensus 93 ~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 93 SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 3467889999999999999999999999999886552 568888999999999999999999999987766543
Q ss_pred ---hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh
Q 010290 432 ---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW 471 (513)
Q Consensus 432 ---~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~ 471 (513)
.+.+.++|.+..+++|+++.||.+|..+++.++..+|++.
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~ 211 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKA 211 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHH
T ss_pred ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHH
Confidence 2445799999999999999999999999999999999753
No 43
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.71 E-value=7.8e-16 Score=133.27 Aligned_cols=186 Identities=19% Similarity=0.200 Sum_probs=149.6
Q ss_pred hhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHH
Q 010290 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQ 318 (513)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 318 (513)
.+...+.+.+.++|+++.+|..++..|+.+. ....++.+.++++|+++.+|..|+.+|+.+.. +
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~ 75 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRAAADALGQIGD--------E 75 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------G
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------H
Confidence 3456778888888999999999988888764 23677888888899999999999988888642 2
Q ss_pred hhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhH
Q 010290 319 HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (513)
Q Consensus 319 ~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l 398 (513)
..++.+...+.|+++.+|..++.+++.+.. +...+.+.++++|+++.||..++.+|+.+.. ...
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~ 139 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERA 139 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHH
Confidence 445777777888999999999999888753 2357778888899999999999999988753 456
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 010290 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA 464 (513)
Q Consensus 399 ~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~ 464 (513)
++.+..++.|+++.+|..++.+++.+. . +..++.+..++.|+++.||..|.++++.+.
T Consensus 140 ~~~L~~~l~d~~~~vr~~A~~aL~~~~----~----~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 140 VEPLIKALKDEDGWVRQSAADALGEIG----G----ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC----S----HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC----c----hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 788888888999999999999998773 2 347788888889999999999999988764
No 44
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.70 E-value=1.2e-15 Score=133.20 Aligned_cols=185 Identities=22% Similarity=0.234 Sum_probs=127.6
Q ss_pred HHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchH
Q 010290 203 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV 282 (513)
Q Consensus 203 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll 282 (513)
.++.+.+.+.|+++.+|..++..|+.+.. +..+|.+...+.|+++.+|..++.+|+.+. .+..+
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------~~~~~ 83 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------DERAV 83 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------CGGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------CHHHH
Confidence 34555556677777777777777776553 245666777777777778887777777763 24566
Q ss_pred HHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHH
Q 010290 283 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPI 362 (513)
Q Consensus 283 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 362 (513)
+.+..+++|+++.||..|+.+|+.+.. +..+|.+..++.|+++.||..++.+++.+.. +..++.
T Consensus 84 ~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~ 147 (211)
T 3ltm_A 84 EPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEP 147 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHHH
Confidence 777777778788888888877777642 2344666667777888888888888777642 235667
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 010290 363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (513)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~ 427 (513)
+..+++|+++.||..++.+|+.+.. +...+.+..+++|+++.+|..+..++..+...
T Consensus 148 L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 148 LIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 7777778788888888888877643 45667777777777788888888877766544
No 45
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.70 E-value=9.7e-16 Score=136.68 Aligned_cols=195 Identities=15% Similarity=0.140 Sum_probs=162.8
Q ss_pred hhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcC-CCcHHHHHHHHHhHHHHHhhh
Q 010290 235 PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRIL 311 (513)
Q Consensus 235 ~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~ll~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~ 311 (513)
+.+....+-+.+.+.++|.+|..|.+++..|..+....+. .....++++.+...+. |++..||..|+.+++.++..+
T Consensus 9 ~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l 88 (242)
T 2qk2_A 9 PVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGL 88 (242)
T ss_dssp CBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 3444455566677788899999999999999999987433 1123578899999994 999999999999999999888
Q ss_pred ChH--HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhh
Q 010290 312 NPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (513)
Q Consensus 312 ~~~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~ 389 (513)
++. .+.+.++|.+...+.|++..||.++..++..++...+ .+.++|.+...++++++.+|..++..++.+....
T Consensus 89 ~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 89 AKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTRT 164 (242)
T ss_dssp GGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 764 5567889999999999999999999999999988765 3568899999999999999999999999987665
Q ss_pred hhh----hhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhH
Q 010290 390 GID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 433 (513)
Q Consensus 390 ~~~----~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~ 433 (513)
+.+ ...+.++|.+...++|+++.+|.++..+++.++..+|.+.+
T Consensus 165 ~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~ 212 (242)
T 2qk2_A 165 QPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAV 212 (242)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHH
Confidence 432 23478999999999999999999999999999999987643
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.70 E-value=1.9e-15 Score=130.88 Aligned_cols=186 Identities=22% Similarity=0.242 Sum_probs=141.5
Q ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcccc
Q 010290 200 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS 279 (513)
Q Consensus 200 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 279 (513)
.+...+.+.+.++|+++.+|..|+.+++.+.. ...++.+.+.+.|+++.+|..++.+|+.+. .+
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------~~ 75 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------DE 75 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CG
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------CH
Confidence 34556677778888888888888888887653 245677777778888888888888888763 24
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhH
Q 010290 280 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQL 359 (513)
Q Consensus 280 ~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 359 (513)
..++.+..+++|+++.||..|+.+|+.+.. +..++.+..++.|+++.||..++.+++.+.. ...
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~ 139 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERA 139 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHH
Confidence 567888888888888888888888887643 2345666677788888888888888887752 345
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 010290 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (513)
Q Consensus 360 ~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~ 425 (513)
++.+..+++|+++.||..++.+|+.+.. +..++.+..+++|+++.+|..+..+++.+.
T Consensus 140 ~~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 140 VEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 6778888888888888888888888743 456777777788888888888888887653
No 47
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.66 E-value=2.3e-12 Score=138.82 Aligned_cols=482 Identities=14% Similarity=0.083 Sum_probs=299.3
Q ss_pred ccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccC-----CchHHHHHHHHHhhcccccc-cC-------------
Q 010290 21 DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NND-----DDDEVLLAMAEELGVFIPYV-GG------------- 80 (513)
Q Consensus 21 ~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~-----~~~~vr~~~~~~l~~~~~~~-~~------------- 80 (513)
.++.+|......+..+++...|+. |+++++.+.+ +.. +++..+..+...|..+..-. ..
T Consensus 115 ~~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~ 193 (963)
T 2x19_B 115 GSKIVLTRLCVALASLALSMMPDA-WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTS 193 (963)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CC
T ss_pred CCHHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHH
Confidence 468899999999999998876654 8889888888 543 25555666666655444211 00
Q ss_pred -chhhhhhhHHHHHhhccchh--HHHHHHHHHHHHHHhhcChHH-HHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCC
Q 010290 81 -LEYANVLLPPLETLCTVEET--CVRDKAVESLCRIGSQMREQD-VVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSA 156 (513)
Q Consensus 81 -~~~~~~l~~~l~~l~~~~~~--~vR~~a~~~l~~l~~~~~~~~-~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~ 156 (513)
....+.+++++..++.+.+. .++..+++++...+. ++... ....+++.+.+... ++..|..++.++..++...
T Consensus 194 l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~ 270 (963)
T 2x19_B 194 LAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQP 270 (963)
T ss_dssp SGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHccc
Confidence 12345667777766654322 478888888877665 33211 12446676666553 5778999999999888754
Q ss_pred CH----HHHHHHHHHHHHH-------cCCCchHHHHHHHHhHHHHHHHhhh--------hhhHHHHHHHHHHhhhc----
Q 010290 157 PE----ALKTELRTIYRQL-------CQDDMPMVRRSAATNLGKFAATVEA--------AHLKSEIMSIFEELTQD---- 213 (513)
Q Consensus 157 ~~----~~~~~l~~~l~~l-------~~d~~~~vr~~a~~~l~~l~~~~~~--------~~~~~~l~~~l~~l~~d---- 213 (513)
.. .....+++.+... ..+.+....+..++.+..++..... ......+++.+.+...+
T Consensus 271 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~ 350 (963)
T 2x19_B 271 DAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHY 350 (963)
T ss_dssp TGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCT
T ss_pred ccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCC
Confidence 32 1333344433322 2334445666777777777654321 11223455555555554
Q ss_pred -cchhHHHHHHHHHHHhhccCC-------h------hhhhhhHHHHHHHhcCCC--------------CH-HHHHHHHHH
Q 010290 214 -DQDSVRLLAVEGCGALGKLLE-------P------QDCVAHILPVIVNFSQDK--------------SW-RVRYMVANQ 264 (513)
Q Consensus 214 -~~~~vr~~a~~~l~~l~~~~~-------~------~~~~~~l~~~l~~~~~d~--------------~~-~vr~~~~~~ 264 (513)
.++.+...++..+..+++... + ......+++.+...+.-+ .+ ..|..+...
T Consensus 351 ~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~ 430 (963)
T 2x19_B 351 PVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDT 430 (963)
T ss_dssp TTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHH
Confidence 456778888888877776221 0 112223344433332211 11 246777778
Q ss_pred HHHHHHHhCCCccccchHHHHHHhc----CCCcHHHHHHHHHhHHHHHhhhChH--HHHHhhhhhhhhhcCCCcHHHHHH
Q 010290 265 LYELCEAVGPEPTRSDVVPAYVRLL----RDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSA 338 (513)
Q Consensus 265 l~~l~~~~~~~~~~~~ll~~l~~~l----~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~ 338 (513)
+..++...+.. ..+.+.+.+...+ .+.++..|++++.+++.+++.+..+ .+...+++.+..+. ++++.+|..
T Consensus 431 L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~-~~~~~vr~~ 508 (963)
T 2x19_B 431 LMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRIS-ISNVQLADT 508 (963)
T ss_dssp HHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSC-CCSHHHHHH
T ss_pred HHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCC-CCcHHHHHH
Confidence 88887766632 2345556666666 6778999999999999999876532 34456666655554 357889999
Q ss_pred HHHHHHHhchhhCHH-HHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhh--hhhhhHHHHHHHhhcC--CChhH
Q 010290 339 LATVIMGMAPILGKD-ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAED--RHWRV 413 (513)
Q Consensus 339 ~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~l~~~l~~l~~~--~~~~v 413 (513)
++.+++.+++.++.. .+...+++.+...+.+ +.|+..|+.++..+++..+.. .+.+.++..+..++.. .+...
T Consensus 509 ~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~ 586 (963)
T 2x19_B 509 VMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQ 586 (963)
T ss_dssp HHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHH
Confidence 999999999876532 3456788888888876 789999999999999876543 1335666666666664 35689
Q ss_pred HHHHHHHHHHHHHHhChhh---HHHHHHHHHHHHhc-----CchhHHHH---HHHHHHHHHHHHhChh------------
Q 010290 414 RLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLK-----DKVYSIRD---AAANNVKRLAEEFGPD------------ 470 (513)
Q Consensus 414 R~~~~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~-----d~~~~VR~---~a~~~l~~l~~~~~~~------------ 470 (513)
|..++++++.++...+.+. +...+++.+...+. ..+++.+. ...++++.+++.++..
T Consensus 587 ~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~ 666 (963)
T 2x19_B 587 CMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELR 666 (963)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccc
Confidence 9999999999997765322 23345555554332 22344444 5677777788877631
Q ss_pred ----------h--HhhhhHHHHHhhhc---CcchHHHHHH----HHHHHhcccceeehh
Q 010290 471 ----------W--AMQHIVPQVALIKS---SRNLVLNSVL----SLLKNAGIDAVFYME 510 (513)
Q Consensus 471 ----------~--~~~~i~~~L~~~~~---~~~~~~r~~~----~~~~~i~~~~~~~~~ 510 (513)
. ..+.+.|.+..+++ +..++.+.+. ..+..+|.++.|||+
T Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~ 725 (963)
T 2x19_B 667 KLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVP 725 (963)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHH
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHH
Confidence 1 23566666655443 2234444333 444467777788876
No 48
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.66 E-value=2.9e-13 Score=145.76 Aligned_cols=484 Identities=11% Similarity=0.031 Sum_probs=287.8
Q ss_pred ccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCC------chHHHHHHHHHhhcccccc----cC---------
Q 010290 21 DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD------DDEVLLAMAEELGVFIPYV----GG--------- 80 (513)
Q Consensus 21 ~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~------~~~vr~~~~~~l~~~~~~~----~~--------- 80 (513)
+++.+|......+..++....| .|.++++.+.+ +..+ ++..+..+...|..+..-. ..
T Consensus 97 ~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~ 174 (971)
T 2x1g_F 97 GPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAE 174 (971)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHH
Confidence 3678999999999999988777 68888888887 4433 4566666666666544210 00
Q ss_pred -chhhhhhhHHHHHhhccc-h-------hHHHHHHHHHHHHHHh--hcChHHHHhhHHHHHHHh----h-----------
Q 010290 81 -LEYANVLLPPLETLCTVE-E-------TCVRDKAVESLCRIGS--QMREQDVVEHFIPLVKRL----A----------- 134 (513)
Q Consensus 81 -~~~~~~l~~~l~~l~~~~-~-------~~vR~~a~~~l~~l~~--~~~~~~~~~~~~~~l~~l----~----------- 134 (513)
....+.+++++..++.+. + ..++..+++++..+.. .++.. ....+++.+..+ .
T Consensus 175 l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~L~~~~~~~~~~~~~~~~ 253 (971)
T 2x1g_F 175 IAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLEVVHKCYWPCIHAGDGCM 253 (971)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHHHHHHHHSSSCC---CCC
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHhhhhhhcccccccccccc
Confidence 012345566665555322 2 2789999999998887 45555 555677766542 1
Q ss_pred cCCCcchhhhHHhhhHhhcCCCCH----HHHHHHHHHHHH-------HcCCCc---hHHHHHHHHhHHHHHHHhhh----
Q 010290 135 AGEWFTARVSSCGLFHVAYPSAPE----ALKTELRTIYRQ-------LCQDDM---PMVRRSAATNLGKFAATVEA---- 196 (513)
Q Consensus 135 ~d~~~~~R~~~~~~l~~~~~~~~~----~~~~~l~~~l~~-------l~~d~~---~~vr~~a~~~l~~l~~~~~~---- 196 (513)
.++++..|..++.++..+...... .....+++.+.. ...+.+ .......++.+..++.....
T Consensus 254 ~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~ 333 (971)
T 2x1g_F 254 TADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLS 333 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 124567899999999988865332 133334444333 224444 26777788888777743221
Q ss_pred ---------hhhHHHHHHHHHHhhhc-----cchhHHHHHHHHHHHhhccC-C------h-------hhhhhhHHHHHHH
Q 010290 197 ---------AHLKSEIMSIFEELTQD-----DQDSVRLLAVEGCGALGKLL-E------P-------QDCVAHILPVIVN 248 (513)
Q Consensus 197 ---------~~~~~~l~~~l~~l~~d-----~~~~vr~~a~~~l~~l~~~~-~------~-------~~~~~~l~~~l~~ 248 (513)
......+++.+...... .++.++..++..+..+++.+ . . ......+++.+..
T Consensus 334 ~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 413 (971)
T 2x1g_F 334 GITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVR 413 (971)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 11223445555554433 47889999999988877621 1 0 1122234444443
Q ss_pred hcC---CC-----C-------HHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC-----CcHHHHHHHHHhHHHHH
Q 010290 249 FSQ---DK-----S-------WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD-----NEAEVRIAAAGKVTKIC 308 (513)
Q Consensus 249 ~~~---d~-----~-------~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d-----~~~~vr~~a~~~l~~~~ 308 (513)
.+. |. + ...|..+...+..++..++ +...+.+++.+...+.. .++..|++|+.+++.++
T Consensus 414 ~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~ia 492 (971)
T 2x1g_F 414 KSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVA 492 (971)
T ss_dssp HTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTT
T ss_pred HhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 331 11 1 1367778888888776655 23344555555555543 67889999999999998
Q ss_pred hhhChH--HHHHhhhhhhhhhc-CCCcHHHHHHHHHHHHHhchhhCHH-HHHHhHHHHHHHhcCCCChHHHHHHHHHHHH
Q 010290 309 RILNPE--LAIQHILPCVKELS-SDSSQHVRSALATVIMGMAPILGKD-ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384 (513)
Q Consensus 309 ~~~~~~--~~~~~l~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 384 (513)
+.+... ...+.+++.+..+. .|+++.||..++.+++.++..++.. .+...++|.++..+ | +.|+..|+.++..
T Consensus 493 e~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~ 569 (971)
T 2x1g_F 493 EHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKE 569 (971)
T ss_dssp TC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHH
T ss_pred hhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHH
Confidence 866532 23455666554544 2568999999999999999887643 23466788888888 4 7899999999999
Q ss_pred hhhhhhhh--hhhhhHHHHHHHhhcC--CChhHHHHHHHHHHHHHHHhChhhH---HHHHHHHHHH----HhcCc--hhH
Q 010290 385 VNQVIGID--LLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQ----WLKDK--VYS 451 (513)
Q Consensus 385 i~~~~~~~--~~~~~l~~~l~~l~~~--~~~~vR~~~~~~l~~l~~~~~~~~~---~~~~~~~l~~----~l~d~--~~~ 451 (513)
+++..+.. .+.+.++..+..++.. .+...+..++++++.++...+.+.. ...+++.+.. .+..+ +..
T Consensus 570 l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~ 649 (971)
T 2x1g_F 570 LCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPA 649 (971)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHH
T ss_pred HHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChh
Confidence 99876643 2335666666676666 3578999999999999987653322 2234344443 22222 222
Q ss_pred HHHH---HHHHHHHHHHHhChh---------------hHhhhhHHHHHhhhcC---cchHHH----HHHHHHHHhcccce
Q 010290 452 IRDA---AANNVKRLAEEFGPD---------------WAMQHIVPQVALIKSS---RNLVLN----SVLSLLKNAGIDAV 506 (513)
Q Consensus 452 VR~~---a~~~l~~l~~~~~~~---------------~~~~~i~~~L~~~~~~---~~~~~r----~~~~~~~~i~~~~~ 506 (513)
-+.. .+..++.+...+++. -..+.++|.+..++++ ...+.+ .+-.++...|.++.
T Consensus 650 ~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~ 729 (971)
T 2x1g_F 650 ARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQ 729 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--C
T ss_pred hHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3333 444455555555431 0125677777665532 123333 33455667788888
Q ss_pred eehhc
Q 010290 507 FYMET 511 (513)
Q Consensus 507 ~~~~~ 511 (513)
|||+.
T Consensus 730 p~l~~ 734 (971)
T 2x1g_F 730 PMLQD 734 (971)
T ss_dssp THHHH
T ss_pred ccHHH
Confidence 88873
No 49
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.63 E-value=7.1e-13 Score=142.68 Aligned_cols=442 Identities=10% Similarity=0.049 Sum_probs=274.8
Q ss_pred CccHHHHHHHhhcHHHHHHH----hChH---hhhhhhhhhhhhccCCchHHHHHHHHHhhcccccccCchhhhhhhHHHH
Q 010290 20 NDDIQLRLNSIRRLSTIARA----LGEE---RTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLE 92 (513)
Q Consensus 20 ~~d~~~r~~a~~~l~~i~~~----~~~~---~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~ 92 (513)
+.+..+|..|+..|....+. ++++ ..+..+++.+.+...+.+.+|..++.++..+++.... .|+.+++-+.
T Consensus 51 ~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~ 128 (971)
T 2x1g_F 51 GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVI 128 (971)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC--C------HHH
T ss_pred CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc--cccHHHHHHH
Confidence 46788999999888776542 3332 2455666666662234588999999999998886544 5777888777
Q ss_pred Hhhccc------hhHHHHHHHHHHHHHHhhcC-----------hHHH---HhhHHHHHHHhhcCC-C-------cchhhh
Q 010290 93 TLCTVE------ETCVRDKAVESLCRIGSQMR-----------EQDV---VEHFIPLVKRLAAGE-W-------FTARVS 144 (513)
Q Consensus 93 ~l~~~~------~~~vR~~a~~~l~~l~~~~~-----------~~~~---~~~~~~~l~~l~~d~-~-------~~~R~~ 144 (513)
..++.+ ++..+..++..+..+++.+. .+.+ ...+++++.++..+. + +.++..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~ 208 (971)
T 2x1g_F 129 NTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNR 208 (971)
T ss_dssp HHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHH
Confidence 666553 56788889999988875421 0111 123445554443321 1 267888
Q ss_pred HHhhhHhhcC--CCCHHHHHHHHHHHHHHc----------------CCCchHHHHHHHHhHHHHHHHhhhh---hhHHHH
Q 010290 145 SCGLFHVAYP--SAPEALKTELRTIYRQLC----------------QDDMPMVRRSAATNLGKFAATVEAA---HLKSEI 203 (513)
Q Consensus 145 ~~~~l~~~~~--~~~~~~~~~l~~~l~~l~----------------~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l 203 (513)
+..++..... ..+......+++.+.. + .++++.+|..+++++..+...-.++ .....+
T Consensus 209 al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l 287 (971)
T 2x1g_F 209 AVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVL 287 (971)
T ss_dssp HHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHH
T ss_pred HHHHHHHHHhhCCcCccccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHH
Confidence 8888876554 3444455667776666 3 1246889999999999998742211 122333
Q ss_pred HHHHHHh-------hhccc---hhHHHHHHHHHHHhhccCCh-------------hhhhhhHHHHHHHhcCC-----CCH
Q 010290 204 MSIFEEL-------TQDDQ---DSVRLLAVEGCGALGKLLEP-------------QDCVAHILPVIVNFSQD-----KSW 255 (513)
Q Consensus 204 ~~~l~~l-------~~d~~---~~vr~~a~~~l~~l~~~~~~-------------~~~~~~l~~~l~~~~~d-----~~~ 255 (513)
+|.+..+ ..+++ ++......+.+..+++.... ......+++.+...... .+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~ 367 (971)
T 2x1g_F 288 IKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEE 367 (971)
T ss_dssp HHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTC
T ss_pred HHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcch
Confidence 3433321 13333 25666667777666643211 11223355555554422 356
Q ss_pred HHHHHHHHHHHHHHHHh-C-----C-Cc-------cccchHHHHHHhcC---CC-----c-------HHHHHHHHHhHHH
Q 010290 256 RVRYMVANQLYELCEAV-G-----P-EP-------TRSDVVPAYVRLLR---DN-----E-------AEVRIAAAGKVTK 306 (513)
Q Consensus 256 ~vr~~~~~~l~~l~~~~-~-----~-~~-------~~~~ll~~l~~~l~---d~-----~-------~~vr~~a~~~l~~ 306 (513)
.++..++..+..++... . . .. ....+++.+...+. |. + ...|.++...+..
T Consensus 368 ~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~ 447 (971)
T 2x1g_F 368 SCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMY 447 (971)
T ss_dssp TTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHH
Confidence 68888888888887632 1 1 11 11234444444442 11 1 2478888888888
Q ss_pred HHhhhChHHHHHhhhhhhhhhcCC-----CcHHHHHHHHHHHHHhchhhCHHH--HHHhHHHHHHHhc-CCCChHHHHHH
Q 010290 307 ICRILNPELAIQHILPCVKELSSD-----SSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLL-KDEFPDVRLNI 378 (513)
Q Consensus 307 ~~~~~~~~~~~~~l~~~l~~~~~d-----~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~d~~~~vr~~a 378 (513)
++...+ +...+.+++.+...+.. .+|+.|.+++.+++.+++.+.... ..+.+++.+..+. .|.++.||..+
T Consensus 448 ~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a 526 (971)
T 2x1g_F 448 CYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTA 526 (971)
T ss_dssp HHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHH
T ss_pred HHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHH
Confidence 887766 44456666666555443 789999999999999998776432 3345666444444 25689999999
Q ss_pred HHHHHHhhhhhhhh-hhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhcC--chhHHH
Q 010290 379 ISKLDQVNQVIGID-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKD--KVYSIR 453 (513)
Q Consensus 379 ~~~l~~i~~~~~~~-~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d--~~~~VR 453 (513)
+.+++.+.+.++.. .+.+.+++.+...+ + ..++..|+.++..+++.++.. .+.+.++..+..++.. ....++
T Consensus 527 ~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~ 603 (971)
T 2x1g_F 527 LETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDS 603 (971)
T ss_dssp HHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHH
Confidence 99999999887632 34467777777776 3 789999999999999876543 2334566666677766 357899
Q ss_pred HHHHHHHHHHHHHhC
Q 010290 454 DAAANNVKRLAEEFG 468 (513)
Q Consensus 454 ~~a~~~l~~l~~~~~ 468 (513)
..+.++++.++...+
T Consensus 604 ~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 604 VRLMFSIGKLMSLLR 618 (971)
T ss_dssp HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999998776
No 50
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.63 E-value=8.6e-12 Score=134.92 Aligned_cols=445 Identities=10% Similarity=0.055 Sum_probs=276.8
Q ss_pred CccHHHHHHHhhcHHHHHHH----hChH---hhhhhhhhhhhh-ccCC-----chHHHHHHHHHhhcccccccCchhhhh
Q 010290 20 NDDIQLRLNSIRRLSTIARA----LGEE---RTRKELIPFLSE-NNDD-----DDEVLLAMAEELGVFIPYVGGLEYANV 86 (513)
Q Consensus 20 ~~d~~~r~~a~~~l~~i~~~----~~~~---~~~~~l~~~l~~-~~~~-----~~~vr~~~~~~l~~~~~~~~~~~~~~~ 86 (513)
+.+..+|..|+..|...... ++++ ..+..++..+.+ ..++ ++.+|..++.++..+++.... ..|+.
T Consensus 60 s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ 138 (1049)
T 3m1i_C 60 STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPE 138 (1049)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTT
T ss_pred CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchH
Confidence 44566666666666554422 2222 234445555544 2222 367899999999988875332 45778
Q ss_pred hhHHHHHhhccchhHHHHHHHHHHHHHHhhcCh---------------HHHHh---hHHHHHHHhhc-CCCcchhhhHHh
Q 010290 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRE---------------QDVVE---HFIPLVKRLAA-GEWFTARVSSCG 147 (513)
Q Consensus 87 l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---------------~~~~~---~~~~~l~~l~~-d~~~~~R~~~~~ 147 (513)
+++.+.+.++ .++..+..++.+|..+...+.. +.+.. .+++.+..... ..+..++..+..
T Consensus 139 ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~ 217 (1049)
T 3m1i_C 139 FIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLE 217 (1049)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 8887777665 4555677788888877754321 11222 23444444333 344667888888
Q ss_pred hhHhhcCCCCHH--HHHHHHHHHHH-HcCCCchHHHHHHHHhHHHHHHHh-hhh--hhH-------HHHHHHHHH-h---
Q 010290 148 LFHVAYPSAPEA--LKTELRTIYRQ-LCQDDMPMVRRSAATNLGKFAATV-EAA--HLK-------SEIMSIFEE-L--- 210 (513)
Q Consensus 148 ~l~~~~~~~~~~--~~~~l~~~l~~-l~~d~~~~vr~~a~~~l~~l~~~~-~~~--~~~-------~~l~~~l~~-l--- 210 (513)
++.....-.+.. ..+.+++.+++ ++. ++.+|..+++++..+...- ++. .+. ..++..+.. +
T Consensus 218 ~l~~~l~wi~~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~ 295 (1049)
T 3m1i_C 218 SLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPV 295 (1049)
T ss_dssp HHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHhhCCHHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCC
Confidence 887766655543 22346666663 332 6889999999999888651 121 011 112222211 0
Q ss_pred ----------hhccchhHHHHHHHHHHHhhccC------Ch--hhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 010290 211 ----------TQDDQDSVRLLAVEGCGALGKLL------EP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272 (513)
Q Consensus 211 ----------~~d~~~~vr~~a~~~l~~l~~~~------~~--~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 272 (513)
..+.+.++.....+.+..++... ++ ......+++.+......++..++..+++.+..++...
T Consensus 296 ~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l 375 (1049)
T 3m1i_C 296 TADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADL 375 (1049)
T ss_dssp TSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 12334444444444444443321 11 1223446777777777778889999988888887733
Q ss_pred --CC---Cc---cccchHHHHHHhcCCC-------------------c---HHHHHHHHHhHHHHHhhhChHHHHHhhhh
Q 010290 273 --GP---EP---TRSDVVPAYVRLLRDN-------------------E---AEVRIAAAGKVTKICRILNPELAIQHILP 322 (513)
Q Consensus 273 --~~---~~---~~~~ll~~l~~~l~d~-------------------~---~~vr~~a~~~l~~~~~~~~~~~~~~~l~~ 322 (513)
.. .. +...+++.+...+.-+ + ...|.++...|..++. .++....+.+.+
T Consensus 376 ~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~-~~~~~~l~~v~~ 454 (1049)
T 3m1i_C 376 FYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTH-LNVIDTEEIMIS 454 (1049)
T ss_dssp HHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHH
T ss_pred HhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHc-cCHHHHHHHHHH
Confidence 11 11 1234555555544210 1 1456677777777764 455555677777
Q ss_pred hhhhhcC--CCcHHHHHHHHHHHHHhchhhCHH---HHHHhHHHHHHHhcC-----CCChHHHHHHHHHHHHhhhhhhhh
Q 010290 323 CVKELSS--DSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLK-----DEFPDVRLNIISKLDQVNQVIGID 392 (513)
Q Consensus 323 ~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~i~~~~~~~ 392 (513)
.+...++ ..+|+.|.+++.+++.++..++.. .+...+++.+..+.. |+.+.||..++.+++++.+.+...
T Consensus 455 ~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~ 534 (1049)
T 3m1i_C 455 KLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH 534 (1049)
T ss_dssp HHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH
Confidence 7766664 478999999999999999877654 224556666665442 345667777999999998776543
Q ss_pred -hhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChh----------hHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010290 393 -LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----------FFDDKLGALCMQWLKDKVYSIRDAAANNVK 461 (513)
Q Consensus 393 -~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~----------~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~ 461 (513)
.+...+++.+...+.+++..||..|+.++..+++.++.. .+.+.++..+..++.+....-+....++++
T Consensus 535 ~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~ 614 (1049)
T 3m1i_C 535 WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACG 614 (1049)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345677788888888989999999999999999987754 234556666667777665656678899999
Q ss_pred HHHHHhCh
Q 010290 462 RLAEEFGP 469 (513)
Q Consensus 462 ~l~~~~~~ 469 (513)
.++...++
T Consensus 615 ~ii~~~~~ 622 (1049)
T 3m1i_C 615 IIISEERS 622 (1049)
T ss_dssp HHHHTCCS
T ss_pred HHHHcCCC
Confidence 99988873
No 51
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.62 E-value=3.1e-12 Score=137.73 Aligned_cols=415 Identities=10% Similarity=0.047 Sum_probs=258.0
Q ss_pred hhhhhhhhhhccCCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhcc-----chhHHHHHHHHHHHHHHhhcCh-
Q 010290 46 RKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTV-----EETCVRDKAVESLCRIGSQMRE- 119 (513)
Q Consensus 46 ~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~-----~~~~vR~~a~~~l~~l~~~~~~- 119 (513)
+..+++.+.+...+.+.+|..++.++..+++.... ..|+.+++.+.+.++. +++..+..++..|..+.+.+..
T Consensus 102 r~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p-~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~ 180 (963)
T 2x19_B 102 KAQLFTQITRFASGSKIVLTRLCVALASLALSMMP-DAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTS 180 (963)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCc-cccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcc
Confidence 44455555442234588999999999988875332 3477888877776654 2556788888888888864311
Q ss_pred --------------HHHHhhHHHHHHHhhcCCCc--chhhhHHhhhHhhcCCCCHH--HHHHHHHHHHHHcCCCchHHHH
Q 010290 120 --------------QDVVEHFIPLVKRLAAGEWF--TARVSSCGLFHVAYPSAPEA--LKTELRTIYRQLCQDDMPMVRR 181 (513)
Q Consensus 120 --------------~~~~~~~~~~l~~l~~d~~~--~~R~~~~~~l~~~~~~~~~~--~~~~l~~~l~~l~~d~~~~vr~ 181 (513)
......+++++.....+.+. ..+..+..++..... .+.. ....+++.+.+.+. ++.+|.
T Consensus 181 ~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~ 257 (963)
T 2x19_B 181 RLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSELFD 257 (963)
T ss_dssp CC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--STTTHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--CchHHH
Confidence 11123456666666554432 256666666654443 3222 23678888888775 567899
Q ss_pred HHHHhHHHHHHHhhhh---hhHHHHHHHHHHh-------hhccchhHHHHHHHHHHHhhccCC--------hhhhhhhHH
Q 010290 182 SAATNLGKFAATVEAA---HLKSEIMSIFEEL-------TQDDQDSVRLLAVEGCGALGKLLE--------PQDCVAHIL 243 (513)
Q Consensus 182 ~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l-------~~d~~~~vr~~a~~~l~~l~~~~~--------~~~~~~~l~ 243 (513)
.+++++..+.....+. .....+++.+... ..+.+.+......+.+..+++... .......++
T Consensus 258 ~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l 337 (963)
T 2x19_B 258 SSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALV 337 (963)
T ss_dssp HHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHH
Confidence 9999999988643221 2223333333322 222333444444555555553211 111223455
Q ss_pred HHHHHhcCC-----CCHHHHHHHHHHHHHHHHHhCCC-------------ccccchHHHHHHhcCCCc------------
Q 010290 244 PVIVNFSQD-----KSWRVRYMVANQLYELCEAVGPE-------------PTRSDVVPAYVRLLRDNE------------ 293 (513)
Q Consensus 244 ~~l~~~~~d-----~~~~vr~~~~~~l~~l~~~~~~~-------------~~~~~ll~~l~~~l~d~~------------ 293 (513)
+.+.....+ .++.++..++..+..++...... .+..++++.+...+..++
T Consensus 338 ~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~ 417 (963)
T 2x19_B 338 NMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEK 417 (963)
T ss_dssp HHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHH
T ss_pred HHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHH
Confidence 666655553 34456666666666665532110 111234444444442111
Q ss_pred ---HHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhc----CCCcHHHHHHHHHHHHHhchhhCHH--HHHHhHHHHHH
Q 010290 294 ---AEVRIAAAGKVTKICRILNPELAIQHILPCVKELS----SDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFL 364 (513)
Q Consensus 294 ---~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~----~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~ 364 (513)
.+.|.++...+..++...+.+ ..+.+.+.+...+ .+.+|+.|.+++.+++.+++.+... .....+++.+.
T Consensus 418 ~~~~~~r~~~~~~L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~ 496 (963)
T 2x19_B 418 EQFRIYRVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP 496 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH
Confidence 134777777887777766643 3455666665555 6789999999999999999876542 23344555443
Q ss_pred HhcCCCChHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChh--hHHHHHHHHH
Q 010290 365 SLLKDEFPDVRLNIISKLDQVNQVIGID-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALC 441 (513)
Q Consensus 365 ~~l~d~~~~vr~~a~~~l~~i~~~~~~~-~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l 441 (513)
. +.++++.||..++.+++.+.+.++.. .+.+.+++.+...+.+ ..+|..|+.++..+++.++.. .+.+.+++.+
T Consensus 497 ~-l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l 573 (963)
T 2x19_B 497 R-ISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVS 573 (963)
T ss_dssp G-SCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHH
T ss_pred h-CCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3 34457889999999999999877632 3557888888887765 789999999999999876653 2345677777
Q ss_pred HHHhcC--chhHHHHHHHHHHHHHHHHhC
Q 010290 442 MQWLKD--KVYSIRDAAANNVKRLAEEFG 468 (513)
Q Consensus 442 ~~~l~d--~~~~VR~~a~~~l~~l~~~~~ 468 (513)
..++.. -...+|..+.++++.++...+
T Consensus 574 ~~~l~~~~~~~~~~~~~~eai~~i~~~~~ 602 (963)
T 2x19_B 574 QDVLMKQIHKTSQCMWLMQALGFLLSALQ 602 (963)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhccCCCChHHHHHHHHHHHHHHhcCC
Confidence 777764 356899999999999998776
No 52
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.59 E-value=5.6e-12 Score=136.36 Aligned_cols=470 Identities=9% Similarity=0.065 Sum_probs=288.3
Q ss_pred CCCcHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhhccCCchHHHHHHHHHhhccccc----ccCc-
Q 010290 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGL- 81 (513)
Q Consensus 7 ~~~~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~----~~~~- 81 (513)
++..+..++..+.+++...|..|-+.|.++-.. | ..+..+...+.. +.++.+|..++..|.+.++. +..+
T Consensus 14 ~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~--p-~~~~~l~~iL~~--s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~ 88 (1049)
T 3m1i_C 14 DIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN--P-DAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDH 88 (1049)
T ss_dssp CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS--T-TGGGGHHHHHHH--CSCHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred cHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhC--c-hHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHhhCccCCHHH
Confidence 345567777777788888999999888777432 2 233344444432 45789999999999876642 1111
Q ss_pred --hhhhhhhHHHHHhhccc-----hhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcC
Q 010290 82 --EYANVLLPPLETLCTVE-----ETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYP 154 (513)
Q Consensus 82 --~~~~~l~~~l~~l~~~~-----~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~ 154 (513)
.....++..+.....++ +..+|...+.++..++..--+ ..++.+++.+.+..+ .+...+..+..++..+.+
T Consensus 89 ~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~e 166 (1049)
T 3m1i_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSE 166 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHH
Confidence 12233344433322222 368899999999999887333 224556676666654 334445556666655442
Q ss_pred CC--------CH-------H----HHHHHHHHHHHHcCC-CchHHHHHHHHhHHHHHHHhhhhh-hHHHHHHHHHH-hhh
Q 010290 155 SA--------PE-------A----LKTELRTIYRQLCQD-DMPMVRRSAATNLGKFAATVEAAH-LKSEIMSIFEE-LTQ 212 (513)
Q Consensus 155 ~~--------~~-------~----~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~-l~~ 212 (513)
.+ +. + ..+.+++.+...+++ ++..++..+.+++..+..+.+... +.+.+++.+.+ ++.
T Consensus 167 ev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~ 246 (1049)
T 3m1i_C 167 EVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT 246 (1049)
T ss_dssp HHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH
T ss_pred HHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC
Confidence 11 11 1 233445555555543 467899999999988877665332 22345555552 332
Q ss_pred ccchhHHHHHHHHHHHhhcc-CChh--hhh-------hhHHHHHHH--------------hcCCCCHHHHHHHHHHHHHH
Q 010290 213 DDQDSVRLLAVEGCGALGKL-LEPQ--DCV-------AHILPVIVN--------------FSQDKSWRVRYMVANQLYEL 268 (513)
Q Consensus 213 d~~~~vr~~a~~~l~~l~~~-~~~~--~~~-------~~l~~~l~~--------------~~~d~~~~vr~~~~~~l~~l 268 (513)
++.+|..|++++..+... .++. .+. ..++..+.. ...+.++.....+++.+..+
T Consensus 247 --~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~ 324 (1049)
T 3m1i_C 247 --SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTY 324 (1049)
T ss_dssp --SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHH
T ss_pred --CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 678999999999988865 2222 011 112222221 11344555666666666555
Q ss_pred HHHh----CCC----ccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhh-----ChH---HHHHhhhhhhhhhcC---
Q 010290 269 CEAV----GPE----PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL-----NPE---LAIQHILPCVKELSS--- 329 (513)
Q Consensus 269 ~~~~----~~~----~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-----~~~---~~~~~l~~~l~~~~~--- 329 (513)
+... ... .....+++.++.+...++.+|+..++..+..+.+.+ ... .+...+++.+...+.
T Consensus 325 ~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~e 404 (1049)
T 3m1i_C 325 LARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPE 404 (1049)
T ss_dssp HHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4322 111 112345777777777788899999999998887732 111 233344444433221
Q ss_pred C-------------------CcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCC--CChHHHHHHHHHHHHhhhh
Q 010290 330 D-------------------SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQV 388 (513)
Q Consensus 330 d-------------------~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~i~~~ 388 (513)
| ..|..|.++..++..++.. +.....+.+.+.+.+.+.+ .++..|.+++.+++.+.+.
T Consensus 405 d~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~-~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~ 483 (1049)
T 3m1i_C 405 EVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHL-NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGT 483 (1049)
T ss_dssp TCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTS
T ss_pred ceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence 0 0235677788888888744 4444556677777777753 5788999999999999876
Q ss_pred hhhh---hhhhhHHHHHHHhhc-----CCChhHHHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010290 389 IGID---LLSQSLLPAIVELAE-----DRHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQWLKDKVYSIRDAAANN 459 (513)
Q Consensus 389 ~~~~---~~~~~l~~~l~~l~~-----~~~~~vR~~~~~~l~~l~~~~~~-~~~~~~~~~~l~~~l~d~~~~VR~~a~~~ 459 (513)
++.. .+...+++.+..+.. ++...+|..++++++.+...+.. ..+...+++.++..+.|+++.||..|+.+
T Consensus 484 ~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~a 563 (1049)
T 3m1i_C 484 MSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDT 563 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred cCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 5543 234566666666543 24556676788999887765432 23455688888999999999999999999
Q ss_pred HHHHHHHhChhhH----------hhhhHHHHHhhhcC
Q 010290 460 VKRLAEEFGPDWA----------MQHIVPQVALIKSS 486 (513)
Q Consensus 460 l~~l~~~~~~~~~----------~~~i~~~L~~~~~~ 486 (513)
+..+++..+.... .+.++..+..+..+
T Consensus 564 l~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~ 600 (1049)
T 3m1i_C 564 FIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTAD 600 (1049)
T ss_dssp HHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTT
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHh
Confidence 9999998876532 24555555555544
No 53
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.59 E-value=6.5e-14 Score=124.29 Aligned_cols=200 Identities=13% Similarity=0.124 Sum_probs=157.0
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHhHHH-HHhhhC-----hHHHHHhhhhhhhhhc-CCCcHHHHHHHHHHHHHhchhhC
Q 010290 279 SDVVPAYVRLLRDNEAEVRIAAAGKVTK-ICRILN-----PELAIQHILPCVKELS-SDSSQHVRSALATVIMGMAPILG 351 (513)
Q Consensus 279 ~~ll~~l~~~l~d~~~~vr~~a~~~l~~-~~~~~~-----~~~~~~~l~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~ 351 (513)
.++-+-+.+.+++.+|.-|.+|+..+.. +++... ...+ ..++..+...+ .|++..+|..++.+++.++..++
T Consensus 15 ~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~ 93 (249)
T 2qk1_A 15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLK 93 (249)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHC
T ss_pred hhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 3444556666778888888888888887 764321 1122 34566666777 79999999999999999998887
Q ss_pred -HH---HHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhh---hhhhhHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 010290 352 -KD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL 424 (513)
Q Consensus 352 -~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l 424 (513)
.. .+...++|.++..++|....||.++..++..+++..+.. ...+.+++.+...+++++|.+|..++.+++.+
T Consensus 94 ~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~ 173 (249)
T 2qk1_A 94 TPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNAS 173 (249)
T ss_dssp TTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 43 344678999999999999999999999999999877421 11367899999999999999999999999999
Q ss_pred HHHhCh--h---hHH-HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhh
Q 010290 425 ASQLGV--G---FFD-DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALI 483 (513)
Q Consensus 425 ~~~~~~--~---~~~-~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~ 483 (513)
+...+. . .+. +.++|.+.+++.|+++.||.+|.++++.++..+|++ .+.|.+.++
T Consensus 174 ~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~----~~~p~l~~L 234 (249)
T 2qk1_A 174 MKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN----TFVKTLEHL 234 (249)
T ss_dssp HHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG----GGHHHHHHS
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH----HHHHHHHHH
Confidence 988763 2 234 579999999999999999999999999999999974 345555443
No 54
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.57 E-value=5.9e-11 Score=118.61 Aligned_cols=451 Identities=12% Similarity=0.121 Sum_probs=286.0
Q ss_pred HHHHHHHh--cCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-c----cC-CchHHHHHHHHHhhccccccc---
Q 010290 11 IAVLIDEL--KNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-N----ND-DDDEVLLAMAEELGVFIPYVG--- 79 (513)
Q Consensus 11 i~~l~~~l--~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~----~~-~~~~vr~~~~~~l~~~~~~~~--- 79 (513)
+..++..+ ..+.+++|..++-.+.+.-... ++.+.+.+..++.. + .+ ++.. ...+...+..+.+...
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~-~~~~~~~~~~~~~~l~~e~~~~~~~~~-~~~~~~~l~~lfPi~p~~~ 247 (778)
T 3opb_A 170 VRFLVKELILRISEDEVKSMMLIIFAELQSSF-QKDFDKAVVDFMSSLIVEAEIDVGNDP-LSIIVKTLSELYPSLTTLC 247 (778)
T ss_dssp TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCSSCH-HHHHHHHHHHHTTTTHHHH
T ss_pred hhhHHHHhccccChhhhHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHhhccCCCCcc-HHHHHHHHHHHhcCCHHHH
Confidence 55555553 4667788888877776665544 34555555555543 2 11 2222 1222223333222221
Q ss_pred Cch-hhhhhhHHHHHhh-ccchhHHHHHHHHHHHHHHhhcC-hHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCC
Q 010290 80 GLE-YANVLLPPLETLC-TVEETCVRDKAVESLCRIGSQMR-EQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSA 156 (513)
Q Consensus 80 ~~~-~~~~l~~~l~~l~-~~~~~~vR~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~ 156 (513)
..- ..+.+.+.+...+ ...+..+....++.+...|..-. .+.+.+..+|.+.+..++ ..+|..++-++..++...
T Consensus 248 s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~ 325 (778)
T 3opb_A 248 SEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFT 325 (778)
T ss_dssp HHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGG
T ss_pred HHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCC
Confidence 111 1123345554443 34445566666666665554211 234455667888877765 467877777777766433
Q ss_pred CH--HHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh-hhh--HHHHHHHHHHhhhc-cchhHHHHHHHHHHHhh
Q 010290 157 PE--ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-AHL--KSEIMSIFEELTQD-DQDSVRLLAVEGCGALG 230 (513)
Q Consensus 157 ~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~--~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~ 230 (513)
+. ....++.+.+.+.+.+++...|+.++++|..+...-.- +.+ .+.+++.+.+++++ ++..+-..++..+.++.
T Consensus 326 ~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt 405 (778)
T 3opb_A 326 KLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLS 405 (778)
T ss_dssp TCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTT
T ss_pred CCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Confidence 22 24567889999988887666699999999987632110 111 12455666666664 55667777888888877
Q ss_pred ccCChh--------------------------------h---------hhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 010290 231 KLLEPQ--------------------------------D---------CVAHILPVIVNFSQDKSWRVRYMVANQLYELC 269 (513)
Q Consensus 231 ~~~~~~--------------------------------~---------~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~ 269 (513)
...+.. . ....++|.+..++.+.++.+|..++++|.+++
T Consensus 406 ~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS 485 (778)
T 3opb_A 406 TLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT 485 (778)
T ss_dssp CCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred CCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 653310 0 01127888889998999999999999999997
Q ss_pred HHhCC--CccccchHHHHHHhcCCCcHH---HHHHHHHhHHHHHhhhChHHHH-----HhhhhhhhhhcCC-CcH-----
Q 010290 270 EAVGP--EPTRSDVVPAYVRLLRDNEAE---VRIAAAGKVTKICRILNPELAI-----QHILPCVKELSSD-SSQ----- 333 (513)
Q Consensus 270 ~~~~~--~~~~~~ll~~l~~~l~d~~~~---vr~~a~~~l~~~~~~~~~~~~~-----~~l~~~l~~~~~d-~~~----- 333 (513)
..-.. ....+..++.++.++.+.... +|..|+.+|.++.-...+.... ...+|.+..++.. +..
T Consensus 486 ~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l 565 (778)
T 3opb_A 486 RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPL 565 (778)
T ss_dssp TSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC-
T ss_pred CCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccc
Confidence 43111 112345788888888776544 8999999999998655444321 1455677777662 221
Q ss_pred --------HHHHHHHHHHHHhchhhCH------HHHHH--hHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhh--hhhh
Q 010290 334 --------HVRSALATVIMGMAPILGK------DATIE--QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLS 395 (513)
Q Consensus 334 --------~vr~~~~~~l~~l~~~~~~------~~~~~--~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--~~~~ 395 (513)
.-+..++.+|..++..-+. ..+.. ..+|.+..++.+++..||.+|++++..++..-.. ..+.
T Consensus 566 ~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~ 645 (778)
T 3opb_A 566 HNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFF 645 (778)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTS
T ss_pred cccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 2377888998888875421 11222 5899999999999999999999999999864332 1221
Q ss_pred h----h---HHHHHHHhhcCCChhHHHHHHHHHHHHHHHhC---hhhHH-HHHHHHHHHHhcC--chhHHHHHHHHHHHH
Q 010290 396 Q----S---LLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFD-DKLGALCMQWLKD--KVYSIRDAAANNVKR 462 (513)
Q Consensus 396 ~----~---l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~-~~~~~~l~~~l~d--~~~~VR~~a~~~l~~ 462 (513)
. . =++.+..++...+..+|.+|+.+++.+....+ ...+. ...++.++.++.+ ++.++|..++.++..
T Consensus 646 ~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~N 725 (778)
T 3opb_A 646 NLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFG 725 (778)
T ss_dssp CCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 1 1 26778899999999999999999998864321 11122 2577888889988 899999999999999
Q ss_pred HHH
Q 010290 463 LAE 465 (513)
Q Consensus 463 l~~ 465 (513)
+.+
T Consensus 726 L~~ 728 (778)
T 3opb_A 726 LFE 728 (778)
T ss_dssp HHT
T ss_pred HHH
Confidence 997
No 55
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.7e-13 Score=121.56 Aligned_cols=196 Identities=14% Similarity=0.205 Sum_probs=156.0
Q ss_pred HHHHhhhccchhHHHHHHHHHHH-hhccCCh----hhhhhhHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhC-CCc--
Q 010290 206 IFEELTQDDQDSVRLLAVEGCGA-LGKLLEP----QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVG-PEP-- 276 (513)
Q Consensus 206 ~l~~l~~d~~~~vr~~a~~~l~~-l~~~~~~----~~~~~~l~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~-~~~-- 276 (513)
-+.+.+.+.+|..|..|+..+.. +.+..+. ......++..+.+.+ +|.+..||..++.+++.++..++ ..+
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 44556778888889988888888 7644221 111245788888888 79999999999999999999887 544
Q ss_pred -cccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH---HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCH
Q 010290 277 -TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 352 (513)
Q Consensus 277 -~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~ 352 (513)
+...++|.++..++|..+.||.++..++..+++..++. ...+.+++.+...+++++|.+|..++.++..++...+.
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 33568999999999999999999999999999987432 11356777777888999999999999999999987773
Q ss_pred ---H--HHH-HhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHh
Q 010290 353 ---D--ATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 405 (513)
Q Consensus 353 ---~--~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l 405 (513)
. ... +.++|.+.++++|.++.||.+|..+++.++..+|.+. +.|.+..+
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~----~~p~l~~L 234 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNT----FVKTLEHL 234 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGG----GHHHHHHS
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHH----HHHHHHHH
Confidence 2 245 7899999999999999999999999999999999643 45555544
No 56
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.57 E-value=4.3e-13 Score=120.46 Aligned_cols=227 Identities=13% Similarity=0.100 Sum_probs=173.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH----
Q 010290 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---- 314 (513)
Q Consensus 242 l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---- 314 (513)
.+|.+.+.+.++++.+|..++.+|..++..... .......+|.+.++++++++.+|..|+.+|+.++... ++
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-DEAIKA 81 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-hHHHHH
Confidence 356677777777788888888888777643210 1112468899999999999999999999999997631 11
Q ss_pred HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCH---HHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhh
Q 010290 315 LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 391 (513)
Q Consensus 315 ~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~ 391 (513)
......+|.+..++.++++.+|..++.++..++..... .......+|.+.++++++++.+|..++.+|+.++..-..
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 12235678888999999999999999999999853221 122245789999999999999999999999999764322
Q ss_pred ---hhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhCh---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 010290 392 ---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 465 (513)
Q Consensus 392 ---~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~ 465 (513)
.......+|.+..++.+++..+|..++.+++.++..-.. ......++|.+..++.++++.||..|+.+++.+..
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 123356889999999999999999999999999853111 11233478999999999999999999999999988
Q ss_pred HhCh
Q 010290 466 EFGP 469 (513)
Q Consensus 466 ~~~~ 469 (513)
..+.
T Consensus 242 ~~~~ 245 (252)
T 4hxt_A 242 GGWL 245 (252)
T ss_dssp TCBC
T ss_pred CCCc
Confidence 6544
No 57
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.55 E-value=7.4e-13 Score=118.93 Aligned_cols=189 Identities=13% Similarity=0.103 Sum_probs=125.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhCh---HH
Q 010290 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---EL 315 (513)
Q Consensus 242 l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~ 315 (513)
++|.+.++++++++.+|..++.+|+.++.... ........+|.+..+++++++.+|..|+.+|+.++..... ..
T Consensus 45 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 124 (252)
T 4hxt_A 45 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 124 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444444444445555555555554432100 0001234677777777777788888888888877742111 01
Q ss_pred HHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCH---HHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhh-
Q 010290 316 AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI- 391 (513)
Q Consensus 316 ~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~- 391 (513)
.....+|.+..++.++++.+|..++.+++.++..... .......+|.+.+++.++++.+|..++.+|+.++..-..
T Consensus 125 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 204 (252)
T 4hxt_A 125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA 204 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 2234677788888888888999999998888754221 122345788899999999999999999999998763211
Q ss_pred --hhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhCh
Q 010290 392 --DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 430 (513)
Q Consensus 392 --~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~ 430 (513)
......+++.+.+++.+++..+|..++.+++.+....+.
T Consensus 205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 112356788999999999999999999999999876443
No 58
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.55 E-value=9.2e-12 Score=122.49 Aligned_cols=342 Identities=12% Similarity=0.094 Sum_probs=225.0
Q ss_pred hhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcCh--H-HHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH--
Q 010290 85 NVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE--Q-DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA-- 159 (513)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--~-~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~-- 159 (513)
..-+|.+..++..+++.++..|+.++..++..-+. . ......+|.+..+..+++..++..|+.++..++..-+++
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 34456666666677777888788888777753222 1 222336777777777778888888888888877643333
Q ss_pred ---HHHHHHHHHHHHcCC-CchHHHHHHHHhHHHHHHHhh-hhhhHHHHHHHHHHhhh------------------ccch
Q 010290 160 ---LKTELRTIYRQLCQD-DMPMVRRSAATNLGKFAATVE-AAHLKSEIMSIFEELTQ------------------DDQD 216 (513)
Q Consensus 160 ---~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~l~~------------------d~~~ 216 (513)
.....++.+..++.+ ++..+++.++.+|..++..-. +..+....+|.|.+++. .++.
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccH
Confidence 223457777887775 577888888888887775321 11222344566665541 1245
Q ss_pred hHHHHHHHHHHHhhccCCh--hhhh--hhHHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHhCCC-----------
Q 010290 217 SVRLLAVEGCGALGKLLEP--QDCV--AHILPVIVNFS------QDKSWRVRYMVANQLYELCEAVGPE----------- 275 (513)
Q Consensus 217 ~vr~~a~~~l~~l~~~~~~--~~~~--~~l~~~l~~~~------~d~~~~vr~~~~~~l~~l~~~~~~~----------- 275 (513)
.|+..|..+|.+++..-.. .... ..+++.+..++ .+.+......++.+|.+++.....+
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 7888888888888754221 1111 12344444433 2345567777777887776432100
Q ss_pred -----------------ccccchHHHHHHhcC-CCcHHHHHHHHHhHHHHHhhhCh--HHH-----HHhhhhhhhhhcCC
Q 010290 276 -----------------PTRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNP--ELA-----IQHILPCVKELSSD 330 (513)
Q Consensus 276 -----------------~~~~~ll~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~--~~~-----~~~l~~~l~~~~~d 330 (513)
.+....++.++.+++ ..++.+++.|+.+|..++..-.+ ..+ ....+|.|..++.+
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s 366 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN 366 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC
Confidence 011245677888885 35689999999999999753211 111 13458999999999
Q ss_pred CcHHHHHHHHHHHHHhchhhCH-HHHHHhHHHHHHHhcCCC--------ChHHHHHHHHHHHHhhhhhh---hhhhhhhH
Q 010290 331 SSQHVRSALATVIMGMAPILGK-DATIEQLLPIFLSLLKDE--------FPDVRLNIISKLDQVNQVIG---IDLLSQSL 398 (513)
Q Consensus 331 ~~~~vr~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~--------~~~vr~~a~~~l~~i~~~~~---~~~~~~~l 398 (513)
++..++..++.+|..++..... ..+....+|.+.++|.+. ..+++..++.+|+.++..-. ........
T Consensus 367 ~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~ 446 (584)
T 3l6x_A 367 EHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQG 446 (584)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Confidence 9999999999999999875443 334467899999999876 35788899999998864311 11234578
Q ss_pred HHHHHHhhcCC--ChhHHHHHHHHHHHHHH
Q 010290 399 LPAIVELAEDR--HWRVRLAIIEYIPLLAS 426 (513)
Q Consensus 399 ~~~l~~l~~~~--~~~vR~~~~~~l~~l~~ 426 (513)
+|.|..++.+. +..+++.|+.++..+..
T Consensus 447 I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 447 IEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 89999998876 77889999999988874
No 59
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.55 E-value=1.1e-12 Score=128.08 Aligned_cols=132 Identities=14% Similarity=0.101 Sum_probs=68.9
Q ss_pred cHHHHHHHHHHHHHhchhhCHH-------HH-HHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHH
Q 010290 332 SQHVRSALATVIMGMAPILGKD-------AT-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-LLSQSLLPAI 402 (513)
Q Consensus 332 ~~~vr~~~~~~l~~l~~~~~~~-------~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~-~~~~~l~~~l 402 (513)
++.++..++.++..++..-+.. .+ ....+|.+.++|.+++..|+..|+.+|..+...-... .+....+|.+
T Consensus 297 ~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~L 376 (457)
T 1xm9_A 297 KDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEV 376 (457)
T ss_dssp CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHH
Confidence 4666666666666665422210 01 1245566666666666666666666666665432111 1233455666
Q ss_pred HHhhcCCCh------hHHHHHHHHHHHHHHHhChh---hHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHH
Q 010290 403 VELAEDRHW------RVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDK-VYSIRDAAANNVKRL 463 (513)
Q Consensus 403 ~~l~~~~~~------~vR~~~~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~d~-~~~VR~~a~~~l~~l 463 (513)
.+++.+++. .+...++.+++.+...-... ......+|.+..++.++ +..+++.|...|..+
T Consensus 377 v~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 377 TRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp HHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 666655432 34455555555554321110 01123566666666666 666666666666544
No 60
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.55 E-value=9.7e-13 Score=128.52 Aligned_cols=146 Identities=16% Similarity=0.127 Sum_probs=108.7
Q ss_pred chHHHHHHhcCCC-cHHHHHHHHHhHHHHHhhhChH--HH----H--HhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhh
Q 010290 280 DVVPAYVRLLRDN-EAEVRIAAAGKVTKICRILNPE--LA----I--QHILPCVKELSSDSSQHVRSALATVIMGMAPIL 350 (513)
Q Consensus 280 ~ll~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~--~~----~--~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 350 (513)
..++.+..++.++ ++.++++|+.+|..++..-+.. .. . ...+|.+..++.+.+..++..++.++..++..-
T Consensus 283 ~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred chHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 4677777777654 5899999999999997633221 11 1 356799999999999999999999999997643
Q ss_pred CH-HHHHHhHHHHHHHhcCCCCh------HHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHhhcCC-ChhHHHHHHH
Q 010290 351 GK-DATIEQLLPIFLSLLKDEFP------DVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDR-HWRVRLAIIE 419 (513)
Q Consensus 351 ~~-~~~~~~l~~~l~~~l~d~~~------~vr~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~~~-~~~vR~~~~~ 419 (513)
.. ..+....+|.+.++|...++ ++...++.+++.+...-.. .......++.+..++.++ +..++..|+.
T Consensus 363 ~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~ 442 (457)
T 1xm9_A 363 LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL 442 (457)
T ss_dssp GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHH
Confidence 22 22335688999999987643 6888888889888653221 112346789999999998 8999999999
Q ss_pred HHHHHH
Q 010290 420 YIPLLA 425 (513)
Q Consensus 420 ~l~~l~ 425 (513)
.+..+.
T Consensus 443 ~L~~~~ 448 (457)
T 1xm9_A 443 LLSDMW 448 (457)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 887664
No 61
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.53 E-value=2.2e-13 Score=122.39 Aligned_cols=223 Identities=13% Similarity=0.093 Sum_probs=163.4
Q ss_pred HHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh---hhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCh---hhh
Q 010290 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDC 238 (513)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~ 238 (513)
++.+..+++++++.+|..++.+|..+...-.+ .......+|.+.+++.++++.+|..|+.+|..++...+. ...
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 56777778888999999999999776654211 122345788899999999999999999999999864322 111
Q ss_pred hhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH-
Q 010290 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE- 314 (513)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~- 314 (513)
....+|.+..+++++++.+|..++.+|++++...... ......+|.+..+++++++.+|..|+.+|+.++......
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 173 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 2347888999999999999999999999986432111 112457899999999999999999999999987632111
Q ss_pred --HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCH---HHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q 010290 315 --LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (513)
Q Consensus 315 --~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~ 387 (513)
......+|.+..++.++++.+|..++.+++.++..... .......+|.+.+++.++++.+|..|+.+|..++.
T Consensus 174 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 12245678888888888999999999999988742211 11224577888888888888888888888887653
No 62
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.53 E-value=2.5e-10 Score=121.16 Aligned_cols=447 Identities=11% Similarity=0.055 Sum_probs=273.0
Q ss_pred CccHHHHHHHhhcHHHHHH----HhChH---hhhhhhhhhhhh-ccCC-----chHHHHHHHHHhhcccccccCchhhhh
Q 010290 20 NDDIQLRLNSIRRLSTIAR----ALGEE---RTRKELIPFLSE-NNDD-----DDEVLLAMAEELGVFIPYVGGLEYANV 86 (513)
Q Consensus 20 ~~d~~~r~~a~~~l~~i~~----~~~~~---~~~~~l~~~l~~-~~~~-----~~~vr~~~~~~l~~~~~~~~~~~~~~~ 86 (513)
+.++.+|..|+..|..... .++++ ..+..++..+.+ ..++ .+-++...+.++..+++..-. ..|+.
T Consensus 60 s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p-~~Wp~ 138 (1023)
T 4hat_C 60 STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPE 138 (1023)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTT
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh-hhchH
Confidence 4566777777777765544 23332 244555666555 2222 356777788888888775432 45777
Q ss_pred hhHHHHHhhccchhHHHHHHHHHHHHHHhhcC---hH--------HH-------HhhHHHHHHHhhc-CCCcchhhhHHh
Q 010290 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMR---EQ--------DV-------VEHFIPLVKRLAA-GEWFTARVSSCG 147 (513)
Q Consensus 87 l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~---~~--------~~-------~~~~~~~l~~l~~-d~~~~~R~~~~~ 147 (513)
+++-+..+++.+ +..+...+..|..+.+.+. .+ .+ .+.+++++....+ ..+......+..
T Consensus 139 ~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~ 217 (1023)
T 4hat_C 139 FIPELIGSSSSS-VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLE 217 (1023)
T ss_dssp HHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 777777666543 3456667777777666531 11 11 1224444444433 345666677888
Q ss_pred hhHhhcCCCCHH--HHHHHHHHHH-HHcCCCchHHHHHHHHhHHHHHH-Hh-hhh-hhHH-------HHHHHH-HHh---
Q 010290 148 LFHVAYPSAPEA--LKTELRTIYR-QLCQDDMPMVRRSAATNLGKFAA-TV-EAA-HLKS-------EIMSIF-EEL--- 210 (513)
Q Consensus 148 ~l~~~~~~~~~~--~~~~l~~~l~-~l~~d~~~~vr~~a~~~l~~l~~-~~-~~~-~~~~-------~l~~~l-~~l--- 210 (513)
++.....-++.. ....+++.+. .++. ++..|..|+++|..+.. .. ++. .+.+ .+++.+ ..+
T Consensus 218 ~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~ 295 (1023)
T 4hat_C 218 SLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPV 295 (1023)
T ss_dssp HHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 888777665555 2345777777 7765 46799999999999986 22 221 1111 122222 111
Q ss_pred -------h---hccchhHHHHHHHHHHHhhcc----CCh-h---hhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 010290 211 -------T---QDDQDSVRLLAVEGCGALGKL----LEP-Q---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272 (513)
Q Consensus 211 -------~---~d~~~~vr~~a~~~l~~l~~~----~~~-~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 272 (513)
. .+++.+....-...+..+++. +.. . .....++..+......+++.+-..+......+....
T Consensus 296 ~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l 375 (1023)
T 4hat_C 296 TADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADL 375 (1023)
T ss_dssp TCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Confidence 1 122333333333344333332 111 1 111223446666667778888777788877777644
Q ss_pred CCC-----cc---ccchHHHHHHhcCCC---------------------cHHHHHHHH-HhHHHHHhhhChHHHHHhhhh
Q 010290 273 GPE-----PT---RSDVVPAYVRLLRDN---------------------EAEVRIAAA-GKVTKICRILNPELAIQHILP 322 (513)
Q Consensus 273 ~~~-----~~---~~~ll~~l~~~l~d~---------------------~~~vr~~a~-~~l~~~~~~~~~~~~~~~l~~ 322 (513)
-.+ .+ ..++++.+.+.+.-+ +....-... ..|..+.. +..+...+.+++
T Consensus 376 ~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~-l~~~~~~~~~~~ 454 (1023)
T 4hat_C 376 FYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTH-LNVIDTEEIMIS 454 (1023)
T ss_dssp TTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHH-HCHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHH
Confidence 322 11 123445554444311 111111111 33333333 344455566777
Q ss_pred hhhhhcC--CCcHHHHHHHHHHHHHhchhhCHH---HHHHhHHHHHHHhcC-----CCChHHHHHHHHHHHHhhhhhhhh
Q 010290 323 CVKELSS--DSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLK-----DEFPDVRLNIISKLDQVNQVIGID 392 (513)
Q Consensus 323 ~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~i~~~~~~~ 392 (513)
.+...+. +.+|+.|.+++.++++++.....+ .+...++|.+..++. |+...||..++.++|++.+.+...
T Consensus 455 ~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~ 534 (1023)
T 4hat_C 455 KLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH 534 (1023)
T ss_dssp HHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 7765554 368999999999999999887654 345678888888876 345668888999999999887532
Q ss_pred -hhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhh----------HHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010290 393 -LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----------FDDKLGALCMQWLKDKVYSIRDAAANNVK 461 (513)
Q Consensus 393 -~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~----------~~~~~~~~l~~~l~d~~~~VR~~a~~~l~ 461 (513)
.+.+.++..+.+.+.+++.++..+|+.++..+++.++... +.+.++..+.....+-.+.-+..+.++++
T Consensus 535 ~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~ 614 (1023)
T 4hat_C 535 WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACG 614 (1023)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2446677777777778889999999999999999877643 45567777777777777788889999999
Q ss_pred HHHHHhChhh
Q 010290 462 RLAEEFGPDW 471 (513)
Q Consensus 462 ~l~~~~~~~~ 471 (513)
.+....+.+.
T Consensus 615 ~vi~~~~~~~ 624 (1023)
T 4hat_C 615 IIISEERSVA 624 (1023)
T ss_dssp HHHTTCCSHH
T ss_pred HHHHhCCCHh
Confidence 9999988654
No 63
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.52 E-value=2.9e-13 Score=121.66 Aligned_cols=223 Identities=14% Similarity=0.133 Sum_probs=156.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhCh--H-HH
Q 010290 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--E-LA 316 (513)
Q Consensus 243 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~-~~ 316 (513)
.+.+...+.++++.+|..++.+|..+...... .......+|.+.++++++++.+|..|+.+|+.++..... . ..
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 44455555555555666666666444332100 111245778888888888888888888888888752111 1 12
Q ss_pred HHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHH---HHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhh-
Q 010290 317 IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID- 392 (513)
Q Consensus 317 ~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~- 392 (513)
....+|.+..++.++++.+|..++.+++.++...... ......+|.+.++++++++.+|..++.+|+.++..-...
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 173 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 2346788888888889999999999999987643322 223458899999999999999999999999997642211
Q ss_pred --hhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhCh---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 010290 393 --LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 465 (513)
Q Consensus 393 --~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~ 465 (513)
.....++|.+..++.+++..+|..++.+++.++..-.. ......++|.+..++.++++.||..|+.+++.++.
T Consensus 174 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 12356788999999999999999999999998743111 11223478889999999999999999999987653
No 64
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.6e-10 Score=115.42 Aligned_cols=475 Identities=12% Similarity=0.072 Sum_probs=284.2
Q ss_pred HHHHHHHhc-CccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh---ccCCchHHHHHHHHHhhcccccccCchhhhh
Q 010290 11 IAVLIDELK-NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE---NNDDDDEVLLAMAEELGVFIPYVGGLEYANV 86 (513)
Q Consensus 11 i~~l~~~l~-~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~---~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~ 86 (513)
+..+...++ .+|+ ....-+..+.++...++- .+++ +.++.+ .....+++|..+-..+.++-+... +.+.+.
T Consensus 134 l~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~--~~~~-~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~-~~~~~~ 208 (778)
T 3opb_A 134 LNELQIRIHYGEDT-HVTYLLSIILQLLNKFKY--NFKE-VRFLVKELILRISEDEVKSMMLIIFAELQSSFQ-KDFDKA 208 (778)
T ss_dssp HHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCC--CSTT-TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHhhcCCCc-chhHHHHHHHHHHHHcCc--cccc-hhhHHHHhccccChhhhHHHHHHHHHHHHHhCc-hHHHHH
Confidence 333433333 3443 233344445555554432 2344 556555 345678899888877777666443 445566
Q ss_pred hhHHHHHhhccchhH----HHHHHHHHHHHHHhhcCh---HHH-HhhHHHHHHHhh-cCCCcchhhhHHhhhHhhcCC--
Q 010290 87 LLPPLETLCTVEETC----VRDKAVESLCRIGSQMRE---QDV-VEHFIPLVKRLA-AGEWFTARVSSCGLFHVAYPS-- 155 (513)
Q Consensus 87 l~~~l~~l~~~~~~~----vR~~a~~~l~~l~~~~~~---~~~-~~~~~~~l~~l~-~d~~~~~R~~~~~~l~~~~~~-- 155 (513)
+..++..++-+.+.. --..++.++..+....+. +-+ .+.+.|.+.... +.++.....++..++...+..
T Consensus 209 ~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~ 288 (778)
T 3opb_A 209 VVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDET 288 (778)
T ss_dssp HHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcH
Confidence 666776665222211 123344444444333322 111 112445555443 334444556666666655432
Q ss_pred CCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh-hhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCC
Q 010290 156 APEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE 234 (513)
Q Consensus 156 ~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 234 (513)
+-+......++.+.+.+++ ..+|..++-.|..+...-+. ..-...+.+.+.+++.+++...|..|++.|..+...-.
T Consensus 289 cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~ 366 (778)
T 3opb_A 289 MRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKAS 366 (778)
T ss_dssp HHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSH
T ss_pred HHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHH
Confidence 2222455667888888865 46787777778777764432 22235688888888887665568999999988875422
Q ss_pred hh-hhh--hhHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCC-----------------------------------
Q 010290 235 PQ-DCV--AHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPE----------------------------------- 275 (513)
Q Consensus 235 ~~-~~~--~~l~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~----------------------------------- 275 (513)
-. .+. ..+++.+.+++++ .+..+-..++..|.+++......
T Consensus 367 VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~ 446 (778)
T 3opb_A 367 VKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDIL 446 (778)
T ss_dssp HHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHH
Confidence 11 111 2245666666653 34456666666666665432210
Q ss_pred ------ccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH--HHHHhhhhhhhhhcCCCcHH---HHHHHHHHHH
Q 010290 276 ------PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQH---VRSALATVIM 344 (513)
Q Consensus 276 ------~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~d~~~~---vr~~~~~~l~ 344 (513)
......+|.+..+++..++.+|..|+++|..++..-... -..+..++.+..++.+.... .|..++.+|.
T Consensus 447 ~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALA 526 (778)
T 3opb_A 447 LFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALT 526 (778)
T ss_dssp HHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 011247888889999999999999999999998642111 23345567777777655443 8999999998
Q ss_pred HhchhhCHHHHH-----HhHHHHHHHhcCC-CCh-------------HHHHHHHHHHHHhhhhhhh------h-hhh-hh
Q 010290 345 GMAPILGKDATI-----EQLLPIFLSLLKD-EFP-------------DVRLNIISKLDQVNQVIGI------D-LLS-QS 397 (513)
Q Consensus 345 ~l~~~~~~~~~~-----~~l~~~l~~~l~d-~~~-------------~vr~~a~~~l~~i~~~~~~------~-~~~-~~ 397 (513)
.+.....+.... -..+|.+..+|.. +.. --+..|+.+|.+++..-+. . .+. ..
T Consensus 527 rLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g 606 (778)
T 3opb_A 527 RMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV 606 (778)
T ss_dssp HHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH
T ss_pred HHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC
Confidence 887433322211 1567888899872 221 1277899999999876421 1 233 25
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHHHhCh---hhHH------HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC
Q 010290 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFD------DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 468 (513)
Q Consensus 398 l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~---~~~~------~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~ 468 (513)
.+|.+..++.+.+..+|.+|+++++.++..... .++. .+-++.++.++...+..+|.+|+.+++.+.....
T Consensus 607 a~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~ 686 (778)
T 3opb_A 607 YWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIP 686 (778)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCh
Confidence 889999999999999999999999999865321 2321 1237889999999999999999999999865433
Q ss_pred h--hhHh--hhhHHHHHhhhc----CcchHHH
Q 010290 469 P--DWAM--QHIVPQVALIKS----SRNLVLN 492 (513)
Q Consensus 469 ~--~~~~--~~i~~~L~~~~~----~~~~~~r 492 (513)
. .... +..+..+..+++ +++.++|
T Consensus 687 ~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R 718 (778)
T 3opb_A 687 LIAKELLTKKELIENAIQVFADQIDDIELRQR 718 (778)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHccccHHHHHHHHhccCCCHHHHHH
Confidence 2 1111 234444555444 3456666
No 65
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.51 E-value=1.9e-11 Score=120.30 Aligned_cols=341 Identities=12% Similarity=0.040 Sum_probs=234.8
Q ss_pred hhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH----HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHH---hhh
Q 010290 124 EHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA----LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAAT---VEA 196 (513)
Q Consensus 124 ~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~---~~~ 196 (513)
..-+|.+..+..+.+..++..|+..+..++..-.+. .....++.|.+++.+++..++..++.+|..++.. -..
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 335677777777778888888888888777544332 2334689999999999999999999999999863 111
Q ss_pred -hhhHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhhccCC-hhhhhhhHHHHHHHhc------------------CCCCH
Q 010290 197 -AHLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLE-PQDCVAHILPVIVNFS------------------QDKSW 255 (513)
Q Consensus 197 -~~~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~~------------------~d~~~ 255 (513)
.......+|.|.+++.. .+.+++..+..+|..++..-. +..+....+|.+.+++ ...+.
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccH
Confidence 22233568888888886 577899999999998887421 1222334566666654 12256
Q ss_pred HHHHHHHHHHHHHHHHhCC--Ccc--ccchHHHHHHhcC------CCcHHHHHHHHHhHHHHHhhhChH-----------
Q 010290 256 RVRYMVANQLYELCEAVGP--EPT--RSDVVPAYVRLLR------DNEAEVRIAAAGKVTKICRILNPE----------- 314 (513)
Q Consensus 256 ~vr~~~~~~l~~l~~~~~~--~~~--~~~ll~~l~~~l~------d~~~~vr~~a~~~l~~~~~~~~~~----------- 314 (513)
.|+..++.+|.+++..-.. ... ..-+++.++.+++ +.+....+.|+.+|..++.....+
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 8999999999998642100 000 1234556666554 345567777888887766432100
Q ss_pred ----------------H-HHHhhhhhhhhhcC-CCcHHHHHHHHHHHHHhchhhCHH--H---HH--HhHHHHHHHhcCC
Q 010290 315 ----------------L-AIQHILPCVKELSS-DSSQHVRSALATVIMGMAPILGKD--A---TI--EQLLPIFLSLLKD 369 (513)
Q Consensus 315 ----------------~-~~~~l~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~--~---~~--~~l~~~l~~~l~d 369 (513)
. +....++.+..++. ..++.++..++.+|..++..-+.. . .. ...+|.+.++|..
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s 366 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN 366 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC
Confidence 0 11233455566663 457999999999999997532211 1 11 4569999999999
Q ss_pred CChHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHHHhhcCC--------ChhHHHHHHHHHHHHHHHhChh----hHHHH
Q 010290 370 EFPDVRLNIISKLDQVNQVIGID-LLSQSLLPAIVELAEDR--------HWRVRLAIIEYIPLLASQLGVG----FFDDK 436 (513)
Q Consensus 370 ~~~~vr~~a~~~l~~i~~~~~~~-~~~~~l~~~l~~l~~~~--------~~~vR~~~~~~l~~l~~~~~~~----~~~~~ 436 (513)
++..|+..++.+|..++...... .+....+|.|..++.++ +..+...++.+++.++.. +.+ .....
T Consensus 367 ~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~~I~~~g 445 (584)
T 3l6x_A 367 EHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAKKLRETQ 445 (584)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHHHHHHCC
Confidence 99999999999999997654322 24567889999998876 356788899999888643 111 22335
Q ss_pred HHHHHHHHhcCc--hhHHHHHHHHHHHHHHH
Q 010290 437 LGALCMQWLKDK--VYSIRDAAANNVKRLAE 465 (513)
Q Consensus 437 ~~~~l~~~l~d~--~~~VR~~a~~~l~~l~~ 465 (513)
.+|.+..++.+. .+.+++.|+.++..+..
T Consensus 446 ~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 446 GIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 799999999876 88999999999998873
No 66
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.48 E-value=2.3e-11 Score=123.97 Aligned_cols=312 Identities=13% Similarity=0.058 Sum_probs=162.4
Q ss_pred chhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcC---CCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccc-
Q 010290 140 TARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQ---DDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQ- 215 (513)
Q Consensus 140 ~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~- 215 (513)
..+.+++..++.+...-.++. +..+.+.+. +.++.+|..++.++|-+....+.+ ....+.+ .+.+++
T Consensus 373 ~~k~sA~aSLGlIh~g~~~~g----l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-~~~lL~~----~L~~~~~ 443 (963)
T 4ady_A 373 WAKFTATASLGVIHKGNLLEG----KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-TTDYLKN----IIVENSG 443 (963)
T ss_dssp HHHHHHHHHHHHHTSSCTTTH----HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-HHHHHHH----HHHHHSS
T ss_pred HHHHHHHHHhhhhccCchHHH----HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-HHHHHHH----HHcCccc
Confidence 346666666666654433322 333333333 456677777777777766655542 2233333 333222
Q ss_pred -------hhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHh
Q 010290 216 -------DSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRL 288 (513)
Q Consensus 216 -------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~ 288 (513)
+.+|..|+.+||.+....+.++ +.+.+...+.+++..+|..++.++|.+.-.-|.......++..+.
T Consensus 444 ~~~~~~~~~ir~gAaLGLGla~~GS~~ee----v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~-- 517 (963)
T 4ady_A 444 TSGDEDVDVLLHGASLGIGLAAMGSANIE----VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ-- 517 (963)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSTTCCCHH----HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH--
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh--
Confidence 5677777777776554444333 344444444445555666666666666433232222223333322
Q ss_pred cCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcC
Q 010290 289 LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK 368 (513)
Q Consensus 289 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 368 (513)
++.+..+|+.++.+|+.+. +|.+...+.++. .+..+.++.+|..++.+++.-....|.....+. .+..+.+
T Consensus 518 -e~~~e~vrR~aalgLGll~--~g~~e~~~~li~---~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~---LL~~~~~ 588 (963)
T 4ady_A 518 -ETQHGNITRGLAVGLALIN--YGRQELADDLIT---KMLASDESLLRYGGAFTIALAYAGTGNNSAVKR---LLHVAVS 588 (963)
T ss_dssp -HCSCHHHHHHHHHHHHHHT--TTCGGGGHHHHH---HHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHH---HHHHHHH
T ss_pred -ccCcHHHHHHHHHHHHhhh--CCChHHHHHHHH---HHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHH---HHHHhcc
Confidence 3445567777777776653 233322222222 223456677777777766655444444332222 2333345
Q ss_pred CCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHH-hhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcC
Q 010290 369 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD 447 (513)
Q Consensus 369 d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d 447 (513)
|.+..||.+|+.+|+.+.-. .+ + ..+.+.. +.++.++.+|.+++.+++.+...-+.. .++..+..+.+|
T Consensus 589 d~~d~VRraAViaLGlI~~g--~~---e-~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~----~aid~L~~L~~D 658 (963)
T 4ady_A 589 DSNDDVRRAAVIALGFVLLR--DY---T-TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ----SAIDVLDPLTKD 658 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTSS--SC---S-SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH----HHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHhhccC--CH---H-HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH----HHHHHHHHHccC
Confidence 66666777777777765321 11 2 2333333 445667777777777777665433321 355566666777
Q ss_pred chhHHHHHHHHHHHHHHHHhChh--hHhhhhHHHHHhhhc
Q 010290 448 KVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVALIKS 485 (513)
Q Consensus 448 ~~~~VR~~a~~~l~~l~~~~~~~--~~~~~i~~~L~~~~~ 485 (513)
++..||+.|+.++|.+...-.+. --...++..|.....
T Consensus 659 ~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~ 698 (963)
T 4ady_A 659 PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVIT 698 (963)
T ss_dssp SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHh
Confidence 77777777777777766543322 012455555555554
No 67
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.47 E-value=1.9e-09 Score=114.51 Aligned_cols=456 Identities=12% Similarity=0.034 Sum_probs=272.9
Q ss_pred HHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccc--------cC----------chh
Q 010290 23 IQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYV--------GG----------LEY 83 (513)
Q Consensus 23 ~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~--------~~----------~~~ 83 (513)
+.+|..-...+..++...-|+ .|+.+++.+.+ +.. ++.........|..+...+ +. ...
T Consensus 114 ~~i~nKLa~~la~I~~~~~p~-~Wp~~l~dL~~~l~~-~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~ 191 (1023)
T 4hat_C 114 KNLINKSDLTLVQILKQEWPQ-NWPEFIPELIGSSSS-SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKE 191 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChh-hchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 345555667777777766554 47888888888 443 3333333333333222211 10 112
Q ss_pred hhhhhHHHHHhhc-cchhHHHHHHHHHHHHHHhhcChHHHH-hhHHHHHH-HhhcCCCcchhhhHHhhhHhhcC-CC-CH
Q 010290 84 ANVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMREQDVV-EHFIPLVK-RLAAGEWFTARVSSCGLFHVAYP-SA-PE 158 (513)
Q Consensus 84 ~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~~~~~-~~~~~~l~-~l~~d~~~~~R~~~~~~l~~~~~-~~-~~ 158 (513)
.+.+++++...+. ..++.+...++++++...+-++...+. ..+++.+. .+.. ++..|..|+.++..++. .. ++
T Consensus 192 ~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~ 269 (1023)
T 4hat_C 192 FEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQD 269 (1023)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSS
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCc
Confidence 3455666655553 456778888999999999887765443 34777776 6664 35689999999998876 33 23
Q ss_pred --HHH---H----HHHHHH-H-------------HHcCCCchHHHHHHHHhHHHHHHHhhh-----hh---hHHHHHHHH
Q 010290 159 --ALK---T----ELRTIY-R-------------QLCQDDMPMVRRSAATNLGKFAATVEA-----AH---LKSEIMSIF 207 (513)
Q Consensus 159 --~~~---~----~l~~~l-~-------------~l~~d~~~~vr~~a~~~l~~l~~~~~~-----~~---~~~~l~~~l 207 (513)
.+. . .+++.+ . ...++.+.+..+..++.+..+++.... +. .....+..+
T Consensus 270 ~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~L 349 (1023)
T 4hat_C 270 NDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYL 349 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 221 1 222222 1 111234566666677777666654322 11 112233455
Q ss_pred HHhhhccchhHHHHHHHHHHHhhccCCh--------hhhhhhHHHHHHHhcC----------C-CCH----------HHH
Q 010290 208 EELTQDDQDSVRLLAVEGCGALGKLLEP--------QDCVAHILPVIVNFSQ----------D-KSW----------RVR 258 (513)
Q Consensus 208 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~--------~~~~~~l~~~l~~~~~----------d-~~~----------~vr 258 (513)
......++.++-..+++.+..+.+.+-. .+....+++.+.+-+. | .+| ...
T Consensus 350 l~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~ 429 (1023)
T 4hat_C 350 IQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL 429 (1023)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHH
T ss_pred HHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHH
Confidence 5566677788878888888777754321 1122334555544321 1 122 011
Q ss_pred H-HHHHHHHHHHHHhCCCccccchHHHHHHhcCC--CcHHHHHHHHHhHHHHHhhhChH---HHHHhhhhhhhhhcC---
Q 010290 259 Y-MVANQLYELCEAVGPEPTRSDVVPAYVRLLRD--NEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSS--- 329 (513)
Q Consensus 259 ~-~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~--- 329 (513)
. ..-.+|..++...+. ...+.+++.+.+.+.+ .++..|++++.++|.+.+....+ .+...++|.+..+..
T Consensus 430 f~~~Rd~L~~l~~l~~~-~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~ 508 (1023)
T 4hat_C 430 YKSEREVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKR 508 (1023)
T ss_dssp HHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhccCHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccc
Confidence 1 111445444443332 2234455655555553 67999999999999999877654 456677788877765
Q ss_pred --CCcHHHHHHHHHHHHHhchhhCH-HHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhh----------hhh
Q 010290 330 --DSSQHVRSALATVIMGMAPILGK-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----------LSQ 396 (513)
Q Consensus 330 --d~~~~vr~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~----------~~~ 396 (513)
|+...+|..++.++|.+++.+.. ..+.+.++..++..+.|+++.|..+|++++..+++..+... +.+
T Consensus 509 ~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~ 588 (1023)
T 4hat_C 509 GKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQ 588 (1023)
T ss_dssp SHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHH
Confidence 46677889999999999886642 22346677778888889899999999999999998776432 335
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhh----HHHHHHHHHHHH----h----cCch-------hHHHHHHH
Q 010290 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQW----L----KDKV-------YSIRDAAA 457 (513)
Q Consensus 397 ~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~----~~~~~~~~l~~~----l----~d~~-------~~VR~~a~ 457 (513)
.++..+.....+-+...+..+.++++.+++..+... +.+.+++.+... . .|++ ...-...+
T Consensus 589 ~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il 668 (1023)
T 4hat_C 589 TIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANII 668 (1023)
T ss_dssp HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHH
Confidence 555566666666677888999999999999877543 223333333321 1 1211 11223346
Q ss_pred HHHHHHHHHhChhhHh--hhhHHHHHhh
Q 010290 458 NNVKRLAEEFGPDWAM--QHIVPQVALI 483 (513)
Q Consensus 458 ~~l~~l~~~~~~~~~~--~~i~~~L~~~ 483 (513)
+++..++..+|..+.. +.+.|.+.++
T Consensus 669 ~~~~~v~~~lg~~f~~~~~~i~~~~l~~ 696 (1023)
T 4hat_C 669 KTNVAVCTSMGADFYPQLGHIYYNMLQL 696 (1023)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence 6777788888876552 4444544443
No 68
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.46 E-value=3.2e-11 Score=115.92 Aligned_cols=305 Identities=12% Similarity=0.046 Sum_probs=201.5
Q ss_pred HHHHHHHHHHcCCC------------chHHHHHHHHhHHHHHHHhhhhh---hHH----------HHHHHHHHhhhccc-
Q 010290 162 TELRTIYRQLCQDD------------MPMVRRSAATNLGKFAATVEAAH---LKS----------EIMSIFEELTQDDQ- 215 (513)
Q Consensus 162 ~~l~~~l~~l~~d~------------~~~vr~~a~~~l~~l~~~~~~~~---~~~----------~l~~~l~~l~~d~~- 215 (513)
...+|.|.++++.. ++.+|..++++|..++..-+.+. ... ...+.+.+++....
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 34556666666542 26888888888888876433211 011 11233444443321
Q ss_pred -hh-----HHH-------HHHHHHHHhhccCChhh--hhhhHHHHHHHhcC-----------CCCHHHHHHHHHHHHHHH
Q 010290 216 -DS-----VRL-------LAVEGCGALGKLLEPQD--CVAHILPVIVNFSQ-----------DKSWRVRYMVANQLYELC 269 (513)
Q Consensus 216 -~~-----vr~-------~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~-----------d~~~~vr~~~~~~l~~l~ 269 (513)
++ ++. .|+.+|.+++..-...+ .....++.+..++. +.++.++..++.+|.+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 11 544 78888888764311111 11235666666652 134678999999999998
Q ss_pred HHhCC--Ccc--ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH---HH-HHhhhhhhhhh-cCCCcHHHHHHHH
Q 010290 270 EAVGP--EPT--RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LA-IQHILPCVKEL-SSDSSQHVRSALA 340 (513)
Q Consensus 270 ~~~~~--~~~--~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~-~~~l~~~l~~~-~~d~~~~vr~~~~ 340 (513)
..-.. ... ....+|.+..++.+.+++++..|+.+|..+...-+.+ .+ ....+|.+..+ ..+.+..++..++
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~ 308 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 308 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHH
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHH
Confidence 42110 011 1246899999999999999999999999986531121 12 22456778775 5667889999999
Q ss_pred HHHHHhchhhCH--HHH--HHhHHHHHHHhcCCCCh----HHHHHHHHHHHHhhhhh--hhh----hhhhhHHHHHHHhh
Q 010290 341 TVIMGMAPILGK--DAT--IEQLLPIFLSLLKDEFP----DVRLNIISKLDQVNQVI--GID----LLSQSLLPAIVELA 406 (513)
Q Consensus 341 ~~l~~l~~~~~~--~~~--~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~i~~~~--~~~----~~~~~l~~~l~~l~ 406 (513)
.++..++..... ..+ ....+|.+.+++.+... .++..++.+|..+...+ +.+ ......+|.+..++
T Consensus 309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL 388 (458)
T 3nmz_A 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL 388 (458)
T ss_dssp HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHS
T ss_pred HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHH
Confidence 999998863321 222 24578999999987654 48999999998887521 111 12346789999999
Q ss_pred cCCChhHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh
Q 010290 407 EDRHWRVRLAIIEYIPLLASQLGVG----FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF 467 (513)
Q Consensus 407 ~~~~~~vR~~~~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~ 467 (513)
.+++..++..|+.++..++.. +.+ ......+|.+..++.+++..+|+.|+.+|..|+..-
T Consensus 389 ~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 389 KSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp SCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred cCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999842 111 223457899999999999999999999999998753
No 69
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.46 E-value=1.5e-14 Score=126.21 Aligned_cols=187 Identities=21% Similarity=0.217 Sum_probs=139.0
Q ss_pred HHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHH
Q 010290 169 RQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN 248 (513)
Q Consensus 169 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 248 (513)
..+++|+++.||..++..+. + ..+..+++|+++.||..++..+. . +.+..
T Consensus 56 ~~ll~d~~~~VR~~AA~~l~-------~--------~~l~~L~~D~~~~VR~~aA~~L~-------~--------~~L~~ 105 (244)
T 1lrv_A 56 VQYLADPFWERRAIAVRYSP-------V--------EALTPLIRDSDEVVRRAVAYRLP-------R--------EQLSA 105 (244)
T ss_dssp GGGTTCSSHHHHHHHHTTSC-------G--------GGGGGGTTCSSHHHHHHHHTTSC-------S--------GGGGG
T ss_pred HHHhcCCCHHHHHHHHHhCC-------H--------HHHHHHccCcCHHHHHHHHHHCC-------H--------HHHHH
Confidence 35678999999999888652 1 23566889999999999997632 1 24667
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhc
Q 010290 249 FSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS 328 (513)
Q Consensus 249 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 328 (513)
+++|++|.||..++..+ . . +.+..+++|+++.||.+++..+ +. +.+..+.
T Consensus 106 ll~D~d~~VR~~aA~~l-------~-----~---~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l~ 155 (244)
T 1lrv_A 106 LMFDEDREVRITVADRL-------P-----L---EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFM 155 (244)
T ss_dssp TTTCSCHHHHHHHHHHS-------C-----T---GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTT
T ss_pred HHcCCCHHHHHHHHHhC-------C-----H---HHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHHH
Confidence 88999999999988743 1 1 2355678999999999998732 21 3455778
Q ss_pred CCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcC
Q 010290 329 SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 408 (513)
Q Consensus 329 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~ 408 (513)
+|+++.||..++..+ +. +.+..+++|+++.||.+++..+. .+.+..+++|
T Consensus 156 ~D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l~---------------~~~L~~Ll~D 205 (244)
T 1lrv_A 156 RDEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRLR---------------GDDLLELLHD 205 (244)
T ss_dssp TCSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHCC---------------GGGGGGGGGC
T ss_pred cCCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhCC---------------HHHHHHHHcC
Confidence 999999999998861 21 34557889999999999987641 1346667899
Q ss_pred CChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010290 409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVK 461 (513)
Q Consensus 409 ~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~ 461 (513)
++|.||..++..++ .+.+..+ .|+++.||.++...+|
T Consensus 206 ~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 206 PDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp SSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred CCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 99999999988764 1445556 9999999999988765
No 70
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.46 E-value=3.1e-10 Score=120.35 Aligned_cols=443 Identities=12% Similarity=0.094 Sum_probs=275.1
Q ss_pred cHHHHHHHhhcHHHHHHHhChH----h---hhhhhhhhhhhcc--CCchHHHHHHHHHhhcccccccCchhhhhhhHHHH
Q 010290 22 DIQLRLNSIRRLSTIARALGEE----R---TRKELIPFLSENN--DDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLE 92 (513)
Q Consensus 22 d~~~r~~a~~~l~~i~~~~~~~----~---~~~~l~~~l~~~~--~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~ 92 (513)
++.+|..|+..|....+.++++ . .+..++.++.+.. ++.+-+|..++.++..++..... ..|+.+++-+.
T Consensus 56 ~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p-~~Wp~~i~~l~ 134 (980)
T 3ibv_A 56 KPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP-SNWNDFFASLQ 134 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc-ccCchHHHHHH
Confidence 6889999998888777766554 2 3455666665522 35677999999999988875432 35666666666
Q ss_pred Hhhccchh-HHHHHHHHHHHHHHhhcCh-----------------HHH--------HhhHHHHHHHhhcCCCcchhhhHH
Q 010290 93 TLCTVEET-CVRDKAVESLCRIGSQMRE-----------------QDV--------VEHFIPLVKRLAAGEWFTARVSSC 146 (513)
Q Consensus 93 ~l~~~~~~-~vR~~a~~~l~~l~~~~~~-----------------~~~--------~~~~~~~l~~l~~d~~~~~R~~~~ 146 (513)
.+++.++. ..-...++.|..+.+.+.. +.+ .+..+..+..+....++..+..+.
T Consensus 135 ~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L 214 (980)
T 3ibv_A 135 GVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCL 214 (980)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 55544333 2333445555544444211 111 111223333333335667788888
Q ss_pred hhhHhhcCCCCHH--HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHH------HHHHHhhh-ccchh
Q 010290 147 GLFHVAYPSAPEA--LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIM------SIFEELTQ-DDQDS 217 (513)
Q Consensus 147 ~~l~~~~~~~~~~--~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~------~~l~~l~~-d~~~~ 217 (513)
.+++....-.+.. ....+++.+.+++.+ +.+|..++++|..+...-.+......++ +.+..+.. +++.+
T Consensus 215 ~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d 292 (980)
T 3ibv_A 215 QVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPN 292 (980)
T ss_dssp HHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHH
T ss_pred HHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHH
Confidence 8888888877766 336889999999986 7899999999999887543221111222 22222222 34445
Q ss_pred HHHHHHHHHHHhhcc------CC----hh------hhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---CC-Ccc
Q 010290 218 VRLLAVEGCGALGKL------LE----PQ------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GP-EPT 277 (513)
Q Consensus 218 vr~~a~~~l~~l~~~------~~----~~------~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~---~~-~~~ 277 (513)
+.....+.+..++.. .+ .+ .....+++.+.....++++.|-..+...+..+.... +. ...
T Consensus 293 ~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~ 372 (980)
T 3ibv_A 293 FDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKEL 372 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccc
Confidence 554333333322211 11 00 233458888889999998888888877777766543 21 111
Q ss_pred -------ccchHHHHHHhcC-------CC-----c----HHHHHHHHHhHHHHHhhhChHHHHH----hhhhhhhhhc--
Q 010290 278 -------RSDVVPAYVRLLR-------DN-----E----AEVRIAAAGKVTKICRILNPELAIQ----HILPCVKELS-- 328 (513)
Q Consensus 278 -------~~~ll~~l~~~l~-------d~-----~----~~vr~~a~~~l~~~~~~~~~~~~~~----~l~~~l~~~~-- 328 (513)
...+++.+.+-+. |. + .+.|.... .+-..+..++++.+.+ .+.+.+.+.+
T Consensus 373 ~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~ 451 (980)
T 3ibv_A 373 SASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATL 451 (980)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcc
Confidence 1234444443332 11 1 24676666 6777777778887767 6666665554
Q ss_pred -CCCcHHHHHHHHHHHHHhchhhCHHH--------HHHhHHHHHHHhcC-----CCChHHHHHHHHHHHHhhhhhhhh-h
Q 010290 329 -SDSSQHVRSALATVIMGMAPILGKDA--------TIEQLLPIFLSLLK-----DEFPDVRLNIISKLDQVNQVIGID-L 393 (513)
Q Consensus 329 -~d~~~~vr~~~~~~l~~l~~~~~~~~--------~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~i~~~~~~~-~ 393 (513)
.+.+|+.+++++.+++.+++.+.... ..+.+++.+..+++ ++.+.||..+++++++..+.+... .
T Consensus 452 ~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~ 531 (980)
T 3ibv_A 452 SPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESA 531 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCT
T ss_pred cCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCch
Confidence 24679999999999999998765311 12357777777765 788999999999999999887643 2
Q ss_pred hhhhHHHHHHH--hhcCCChhHHHHHHHHHHHHHHHhChhh--HHHHHHHHHHHHhcC---c------------------
Q 010290 394 LSQSLLPAIVE--LAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKD---K------------------ 448 (513)
Q Consensus 394 ~~~~l~~~l~~--l~~~~~~~vR~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d---~------------------ 448 (513)
+.+.+++.+.. .+.+++.++|..|+.++..+++.++... +.+.++..+-.++.- +
T Consensus 532 ~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~ 611 (980)
T 3ibv_A 532 AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNS 611 (980)
T ss_dssp THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTT
T ss_pred hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccC
Confidence 23444555555 5557888999999999999999876532 223344444444431 1
Q ss_pred hhHHHHHHHHHHHHHHHHhC
Q 010290 449 VYSIRDAAANNVKRLAEEFG 468 (513)
Q Consensus 449 ~~~VR~~a~~~l~~l~~~~~ 468 (513)
..+=+....+++|.+....+
T Consensus 612 ~~~~ql~L~eaig~li~~~~ 631 (980)
T 3ibv_A 612 DFNSQLYLFETVGVLISSGN 631 (980)
T ss_dssp THHHHHHHHHHHHHHHHHSC
T ss_pred CchHHHHHHHHHHHHHhCCC
Confidence 12346678999999998876
No 71
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.45 E-value=1e-10 Score=119.32 Aligned_cols=303 Identities=15% Similarity=0.067 Sum_probs=137.8
Q ss_pred CCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHc---CC-CchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhh
Q 010290 136 GEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLC---QD-DMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELT 211 (513)
Q Consensus 136 d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~---~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~ 211 (513)
.+++.+|..|+..++.+......+....+.+.+..-- .+ +++.+|..++-+||.+.--.+.+.+.+ .|...+
T Consensus 406 s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e----~L~~~L 481 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYE----ALKEVL 481 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHH----HHHHHH
T ss_pred CCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHH----HHHHHH
Confidence 3445566666666666655555443332333222210 00 024566666666655433222222222 233344
Q ss_pred hccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHh-cC
Q 010290 212 QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRL-LR 290 (513)
Q Consensus 212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~-l~ 290 (513)
.|++..+|..|..+++.+.-..+..+....++..+. ++.+..+|+.++.+|+.+. +|.+ +..+.+.+. ..
T Consensus 482 ~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---e~~~e~vrR~aalgLGll~--~g~~----e~~~~li~~L~~ 552 (963)
T 4ady_A 482 YNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---ETQHGNITRGLAVGLALIN--YGRQ----ELADDLITKMLA 552 (963)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHT--TTCG----GGGHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---ccCcHHHHHHHHHHHHhhh--CCCh----HHHHHHHHHHHh
Confidence 444445555555566555433333333333333322 2334455666655555552 2222 222222222 23
Q ss_pred CCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCC
Q 010290 291 DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE 370 (513)
Q Consensus 291 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 370 (513)
+.++.+|.+++.+++.-.-..|.....+.++. .+.+|.+..||++++..++.+.- |.. +.+.+.+..+..+.
T Consensus 553 ~~dp~vRygaa~alglAyaGTGn~~aIq~LL~---~~~~d~~d~VRraAViaLGlI~~--g~~---e~v~rlv~~L~~~~ 624 (963)
T 4ady_A 553 SDESLLRYGGAFTIALAYAGTGNNSAVKRLLH---VAVSDSNDDVRRAAVIALGFVLL--RDY---TTVPRIVQLLSKSH 624 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHH---HHHHCSCHHHHHHHHHHHHHHTS--SSC---SSHHHHTTTGGGCS
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH---HhccCCcHHHHHHHHHHHHhhcc--CCH---HHHHHHHHHHHhcC
Confidence 45566666666655554444444333232222 22245555566666666655432 111 11122222233455
Q ss_pred ChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhcC-
Q 010290 371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKD- 447 (513)
Q Consensus 371 ~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d- 447 (513)
++.||.+++.+||.++..-+. ..++..|..+..|++..||++|+.+++.+...-.+. .....++..+.+...|
T Consensus 625 d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk 700 (963)
T 4ady_A 625 NAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNK 700 (963)
T ss_dssp CHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcc
Confidence 566666666666665533222 344555555566666666666666666665443222 0122344444444432
Q ss_pred -chhHHHHHHHHHHHHH
Q 010290 448 -KVYSIRDAAANNVKRL 463 (513)
Q Consensus 448 -~~~~VR~~a~~~l~~l 463 (513)
.++.+|-.+.-+.|-+
T Consensus 701 ~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 701 HQEGLAKFGACVAQGIM 717 (963)
T ss_dssp SSCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHH
Confidence 4555555555555544
No 72
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.44 E-value=8.6e-11 Score=112.95 Aligned_cols=336 Identities=10% Similarity=0.021 Sum_probs=212.4
Q ss_pred HHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh--hhhHHHHHHHHHHhhhcc------------chhHHHHHHHHHHHhh
Q 010290 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDD------------QDSVRLLAVEGCGALG 230 (513)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~------------~~~vr~~a~~~l~~l~ 230 (513)
++.+...+.+.++. ..++.|..+....+. .......+|.|.+++... ++++|..|..++.+++
T Consensus 34 ~~~l~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~ 110 (458)
T 3nmz_A 34 VYSLLSMLGTHDKD---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNII 110 (458)
T ss_dssp -----------CCH---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHH---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHH
Confidence 33444444444333 244445554443321 224456788888888753 2699999999999999
Q ss_pred ccCChhhhh---hhHH----------HHHHHhcCCC----C---HHHHH-------HHHHHHHHHHHHhC--CCccccch
Q 010290 231 KLLEPQDCV---AHIL----------PVIVNFSQDK----S---WRVRY-------MVANQLYELCEAVG--PEPTRSDV 281 (513)
Q Consensus 231 ~~~~~~~~~---~~l~----------~~l~~~~~d~----~---~~vr~-------~~~~~l~~l~~~~~--~~~~~~~l 281 (513)
..-++.... ..++ +.+.+++... + ..++. .++.+|++++..-. ......-.
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~ 190 (458)
T 3nmz_A 111 HSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGG 190 (458)
T ss_dssp HHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTH
T ss_pred ccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Confidence 876653211 1122 2222223221 1 01444 67777877742100 00112346
Q ss_pred HHHHHHhcC-----------CCcHHHHHHHHHhHHHHHhhhChH--HH--HHhhhhhhhhhcCCCcHHHHHHHHHHHHHh
Q 010290 282 VPAYVRLLR-----------DNEAEVRIAAAGKVTKICRILNPE--LA--IQHILPCVKELSSDSSQHVRSALATVIMGM 346 (513)
Q Consensus 282 l~~l~~~l~-----------d~~~~vr~~a~~~l~~~~~~~~~~--~~--~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l 346 (513)
++.+..++. +.++.++..|+++|..++..-... .+ ....+|.+..++.+++..++..++.+|..+
T Consensus 191 l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nL 270 (458)
T 3nmz_A 191 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNL 270 (458)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 777777773 235789999999999998642211 22 234589999999999999999999999999
Q ss_pred chhhCH---HHH-HHhHHHHHHHh-cCCCChHHHHHHHHHHHHhhhhh-hh-hhh--hhhHHHHHHHhhcCCCh----hH
Q 010290 347 APILGK---DAT-IEQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVI-GI-DLL--SQSLLPAIVELAEDRHW----RV 413 (513)
Q Consensus 347 ~~~~~~---~~~-~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~i~~~~-~~-~~~--~~~l~~~l~~l~~~~~~----~v 413 (513)
+..-+. ..+ ....+|.+.++ +...+..++..++.+|..+.... +. ..+ ....+|.|..++.+.+. .+
T Consensus 271 s~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v 350 (458)
T 3nmz_A 271 SWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAI 350 (458)
T ss_dssp TSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHH
T ss_pred hcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHH
Confidence 853111 122 23568888996 45678899999999999887632 21 112 35688999999876543 48
Q ss_pred HHHHHHHHHHHHHH--hChhh----HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh----hHhhhhHHHHHhh
Q 010290 414 RLAIIEYIPLLASQ--LGVGF----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD----WAMQHIVPQVALI 483 (513)
Q Consensus 414 R~~~~~~l~~l~~~--~~~~~----~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~----~~~~~i~~~L~~~ 483 (513)
+..++.++..++.. .+.+. .....+|.+..++.+.+..++..|+.++..++.. .++ ....-.+|.|.++
T Consensus 351 ~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~L 429 (458)
T 3nmz_A 351 IESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNL 429 (458)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHH
Confidence 99999999988752 12221 1224789999999999999999999999999742 121 1235779999999
Q ss_pred hcCcchH-HHHHHHHHHHhccc
Q 010290 484 KSSRNLV-LNSVLSLLKNAGID 504 (513)
Q Consensus 484 ~~~~~~~-~r~~~~~~~~i~~~ 504 (513)
+.+++.. .+.++.++.++...
T Consensus 430 L~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 430 IHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTC
T ss_pred HhCCCHHHHHHHHHHHHHHHcC
Confidence 9877655 45888888888754
No 73
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.42 E-value=1.1e-10 Score=123.66 Aligned_cols=436 Identities=11% Similarity=0.062 Sum_probs=254.5
Q ss_pred chHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhccc--hhHHHHHHHHHHHHHHhhcChH----H---HHhhHHHHH
Q 010290 60 DDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVE--ETCVRDKAVESLCRIGSQMREQ----D---VVEHFIPLV 130 (513)
Q Consensus 60 ~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~--~~~vR~~a~~~l~~l~~~~~~~----~---~~~~~~~~l 130 (513)
+++.|+.|-..|..+-+. ++.|.....++ .... ++.+|..|+.++...++.++++ + +++.+++.+
T Consensus 21 d~~~r~~A~~~L~~~q~s---p~aw~~~~~iL---~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l 94 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSS---STGWKICHEIF---SEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYI 94 (980)
T ss_dssp CHHHHHHHHHHHHHHHHS---TTHHHHHHHHT---TCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcC---hhHHHHHHHHH---hCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHH
Confidence 567777777777666542 22333222222 1221 5778888888887777655444 3 334456665
Q ss_pred HHhhc-CCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCch-HHHHHHHHhHHHHHHHhhh------------
Q 010290 131 KRLAA-GEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMP-MVRRSAATNLGKFAATVEA------------ 196 (513)
Q Consensus 131 ~~l~~-d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~-~vr~~a~~~l~~l~~~~~~------------ 196 (513)
..... +....+|...+.++..++...-+..|+++++.+..+++.++. ..-....+.|..+.+.+..
T Consensus 95 ~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r 174 (980)
T 3ibv_A 95 KELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQK 174 (980)
T ss_dssp HHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhh
Confidence 55221 234567777777777666554444455556555555543222 2223344444433333211
Q ss_pred -----h----hhHHHHHHHHHHhh----hccchhHHHHHHHHHHHhhccCChhhhh-hhHHHHHHHhcCCCCHHHHHHHH
Q 010290 197 -----A----HLKSEIMSIFEELT----QDDQDSVRLLAVEGCGALGKLLEPQDCV-AHILPVIVNFSQDKSWRVRYMVA 262 (513)
Q Consensus 197 -----~----~~~~~l~~~l~~l~----~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~l~~~l~~~~~d~~~~vr~~~~ 262 (513)
+ .-.+.+.+.+..++ ...++.++..+++++..+....+..... +.+++.+.+.+.+ +.+|.+++
T Consensus 175 ~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ 252 (980)
T 3ibv_A 175 DNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAAC 252 (980)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHH
T ss_pred hHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHH
Confidence 0 00112233333333 3367789999999999999887765433 4588888888876 67999999
Q ss_pred HHHHHHHHHhCCCccccchHHH------HHHhcC-CCcHHHHHHHHHhHHHHHhh------hC----hH------HHHHh
Q 010290 263 NQLYELCEAVGPEPTRSDVVPA------YVRLLR-DNEAEVRIAAAGKVTKICRI------LN----PE------LAIQH 319 (513)
Q Consensus 263 ~~l~~l~~~~~~~~~~~~ll~~------l~~~l~-d~~~~vr~~a~~~l~~~~~~------~~----~~------~~~~~ 319 (513)
++|..+...-.+......++.. +..+.. +.+.++++..++.+..+++. .+ .+ .....
T Consensus 253 ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ 332 (980)
T 3ibv_A 253 ETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYN 332 (980)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHH
Confidence 9999998753321111122221 111111 45666665555444433322 11 11 33456
Q ss_pred hhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCH--------H---HHHHhHHHHHHHhcC-------CC----C-----h
Q 010290 320 ILPCVKELSSDSSQHVRSALATVIMGMAPILGK--------D---ATIEQLLPIFLSLLK-------DE----F-----P 372 (513)
Q Consensus 320 l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--------~---~~~~~l~~~l~~~l~-------d~----~-----~ 372 (513)
++|.+..+..+++..|-..++..+..+...... . .+...+++.+.+-+. |+ + .
T Consensus 333 ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~ 412 (980)
T 3ibv_A 333 LFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQ 412 (980)
T ss_dssp THHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHH
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHH
Confidence 788888888999999988888888776643221 1 122344444444332 11 1 2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhh----hHHHHHHHhhc---CCChhHHHHHHHHHHHHHHHhChh--------hHHHHH
Q 010290 373 DVRLNIISKLDQVNQVIGIDLLSQ----SLLPAIVELAE---DRHWRVRLAIIEYIPLLASQLGVG--------FFDDKL 437 (513)
Q Consensus 373 ~vr~~a~~~l~~i~~~~~~~~~~~----~l~~~l~~l~~---~~~~~vR~~~~~~l~~l~~~~~~~--------~~~~~~ 437 (513)
+.|.... .+...+..+|.+.+.+ .+.+.+.+.+. +.+|+.+++++.+++.+++.+... ...+.+
T Consensus 413 e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l 491 (980)
T 3ibv_A 413 EMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVL 491 (980)
T ss_dssp HHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHH
T ss_pred HHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHH
Confidence 4676666 6777777778777666 66666766553 457999999999999999876531 122357
Q ss_pred HHHHHHHhc-----CchhHHHHHHHHHHHHHHHHhChhh-HhhhhHHHHHh--hhcCcch-HHHHHHHHHHHhccc
Q 010290 438 GALCMQWLK-----DKVYSIRDAAANNVKRLAEEFGPDW-AMQHIVPQVAL--IKSSRNL-VLNSVLSLLKNAGID 504 (513)
Q Consensus 438 ~~~l~~~l~-----d~~~~VR~~a~~~l~~l~~~~~~~~-~~~~i~~~L~~--~~~~~~~-~~r~~~~~~~~i~~~ 504 (513)
++.+..++. ++++.||..+++++++..+.+..+- ....+++.+.. .+.+++- +...+.+++.+++.+
T Consensus 492 ~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~ 567 (980)
T 3ibv_A 492 SQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKS 567 (980)
T ss_dssp HHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHH
Confidence 788888765 8999999999999999988775421 12334444444 4445543 444555555555443
No 74
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.40 E-value=1.4e-11 Score=107.10 Aligned_cols=186 Identities=15% Similarity=0.129 Sum_probs=140.6
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH---HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCH---
Q 010290 279 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--- 352 (513)
Q Consensus 279 ~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--- 352 (513)
+...|.+..+++++++.+|..|+.+|..++..-... ......+|.+..++.++++.+|..++.+++.++.....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 456788888889899999999999998887531111 12235678888888889999999999999998743211
Q ss_pred HHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhC
Q 010290 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429 (513)
Q Consensus 353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~ 429 (513)
.......+|.+.++++++++.+|..++.+|+.++..-.. .......+|.+..++.+++..+|..++.++..++....
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 122245789999999999999999999999999753221 11235688999999999999999999999999986411
Q ss_pred h---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 010290 430 V---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA 464 (513)
Q Consensus 430 ~---~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~ 464 (513)
. .......++.+..++.++++.||..|+.+|+.++
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 1 1122347899999999999999999999998875
No 75
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.37 E-value=2e-13 Score=119.06 Aligned_cols=163 Identities=26% Similarity=0.341 Sum_probs=83.8
Q ss_pred HHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHH
Q 010290 168 YRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIV 247 (513)
Q Consensus 168 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 247 (513)
+..+++|+++.||..++..++ . +.+..+++|+++.||..++..+ +. +.+.
T Consensus 79 l~~L~~D~~~~VR~~aA~~L~-------~--------~~L~~ll~D~d~~VR~~aA~~l-------~~--------~~L~ 128 (244)
T 1lrv_A 79 LTPLIRDSDEVVRRAVAYRLP-------R--------EQLSALMFDEDREVRITVADRL-------PL--------EQLE 128 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTSC-------S--------GGGGGTTTCSCHHHHHHHHHHS-------CT--------GGGG
T ss_pred HHHHccCcCHHHHHHHHHHCC-------H--------HHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHH
Confidence 444555666666665555421 1 2344455666666666655532 11 1233
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhh
Q 010290 248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKEL 327 (513)
Q Consensus 248 ~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~ 327 (513)
.+++|+++.||..++..+ + . +.+..+++|+++.||.+++.. ++. +.+..+
T Consensus 129 ~L~~D~d~~VR~~aA~~l-------~-----~---~~l~~l~~D~d~~VR~~aa~~-------l~~--------~ll~~l 178 (244)
T 1lrv_A 129 QMAADRDYLVRAYVVQRI-------P-----P---GRLFRFMRDEDRQVRKLVAKR-------LPE--------ESLGLM 178 (244)
T ss_dssp GGTTCSSHHHHHHHHHHS-------C-----G---GGGGGTTTCSCHHHHHHHHHH-------SCG--------GGGGGS
T ss_pred HHHcCCCHHHHHHHHHhc-------C-----H---HHHHHHHcCCCHHHHHHHHHc-------CCH--------HHHHHH
Confidence 445666666666665421 1 0 123345566666666666554 111 333355
Q ss_pred cCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhc
Q 010290 328 SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 407 (513)
Q Consensus 328 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~ 407 (513)
++|++|.||.+++..+ + .+.+..+++|+++.||.+++..++ .+.+..+ +
T Consensus 179 l~D~d~~VR~aaa~~l-------~--------~~~L~~Ll~D~d~~VR~~aa~~l~---------------~~~L~~L-~ 227 (244)
T 1lrv_A 179 TQDPEPEVRRIVASRL-------R--------GDDLLELLHDPDWTVRLAAVEHAS---------------LEALREL-D 227 (244)
T ss_dssp TTCSSHHHHHHHHHHC-------C--------GGGGGGGGGCSSHHHHHHHHHHSC---------------HHHHHHC-C
T ss_pred HcCCCHHHHHHHHHhC-------C--------HHHHHHHHcCCCHHHHHHHHHcCC---------------HHHHHHc-c
Confidence 5666666666666542 1 123455566666666666666543 1334445 6
Q ss_pred CCChhHHHHHHHHH
Q 010290 408 DRHWRVRLAIIEYI 421 (513)
Q Consensus 408 ~~~~~vR~~~~~~l 421 (513)
|++|.||.++...+
T Consensus 228 D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 228 EPDPEVRLAIAGRL 241 (244)
T ss_dssp CCCHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHHh
Confidence 66666666665443
No 76
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.36 E-value=2.7e-10 Score=117.75 Aligned_cols=281 Identities=12% Similarity=0.153 Sum_probs=205.0
Q ss_pred HHHHHHHHHHHHh-hcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH-----HHHHHHHHHHHHcCCCc
Q 010290 103 RDKAVESLCRIGS-QMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA-----LKTELRTIYRQLCQDDM 176 (513)
Q Consensus 103 R~~a~~~l~~l~~-~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~-----~~~~l~~~l~~l~~d~~ 176 (513)
+..+...+..+.. ..........+...+.....++... ..|+..+..+++..+.. +.-.+++.++..+.|+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~ 108 (986)
T 2iw3_A 31 RHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKD 108 (986)
T ss_dssp HHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCc
Confidence 3444555555443 2222222224556666666655333 77888888888665431 44456889999999999
Q ss_pred hHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhhccCChh--hhhhhHHHHHHHhcCCC
Q 010290 177 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDK 253 (513)
Q Consensus 177 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~ 253 (513)
..||.+|..+...+++.++++.. ..++|.+.+.+... .|..+..|+.++..+++..+.. ...+.++|.+.....|.
T Consensus 109 ~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~ 187 (986)
T 2iw3_A 109 KEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDT 187 (986)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccC
Confidence 99999999999999999988665 78888888877665 6999999999999999876432 34567999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHH--HHhhhChHHHHHhhhhhhhhhcCCC
Q 010290 254 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTK--ICRILNPELAIQHILPCVKELSSDS 331 (513)
Q Consensus 254 ~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~--~~~~~~~~~~~~~l~~~l~~~~~d~ 331 (513)
.+.|+.++..++..++..++... ...++|.+..++.+++ +|-+ ++..|+. |...+. ......+.|.+...+.++
T Consensus 188 k~~v~~~~~~~~~~~~~~~~n~d-~~~~~~~~~~~~~~p~-~~~~-~~~~l~~~tfv~~v~-~~~l~~~~p~l~r~l~~~ 263 (986)
T 2iw3_A 188 KKEVKAAATAAMTKATETVDNKD-IERFIPSLIQCIADPT-EVPE-TVHLLGATTFVAEVT-PATLSIMVPLLSRGLNER 263 (986)
T ss_dssp SHHHHHHHHHHHHHHGGGCCCTT-TGGGHHHHHHHHHCTT-HHHH-HHHHHTTCCCCSCCC-HHHHHHHHHHHHHHHTSS
T ss_pred cHHHHHHHHHHHHHHHhcCCCcc-hhhhHHHHHHHhcChh-hhHH-HHHHhhcCeeEeeec-chhHHHHHHHHHhhhccC
Confidence 99999999999999998887765 4678999999999885 3433 3444433 111122 233467889999888999
Q ss_pred cHHHHHHHHHHHHHhchhhCHHHHHHhH----HHHHHHhcCC-CChHHHHHHHHHHHHhhhhhh
Q 010290 332 SQHVRSALATVIMGMAPILGKDATIEQL----LPIFLSLLKD-EFPDVRLNIISKLDQVNQVIG 390 (513)
Q Consensus 332 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l----~~~l~~~l~d-~~~~vr~~a~~~l~~i~~~~~ 390 (513)
+..+++.++-.+..+++..........+ +|-+.+.... .+|++|..+-+++..+....+
T Consensus 264 ~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 264 ETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp SHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred cchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999988765544444 4444443332 579999999999988865533
No 77
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.34 E-value=4.4e-11 Score=103.98 Aligned_cols=186 Identities=14% Similarity=0.124 Sum_probs=133.2
Q ss_pred hhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhCh---
Q 010290 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--- 313 (513)
Q Consensus 240 ~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--- 313 (513)
....|.+..++.++++.+|..++.+|..++..... .......+|.+.++++++++.+|..|+.+|+.++.....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 34566677777777777777777777777632110 111235788888888888888998888888888642111
Q ss_pred HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCH---HHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhh
Q 010290 314 ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 390 (513)
Q Consensus 314 ~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~ 390 (513)
.......+|.+..++.++++.+|..++.++..++..... .......+|.+.++++++++.+|..++.+|..++..-.
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 112234678888888999999999999999998853222 11234578999999999999999999999999976421
Q ss_pred h---hhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 010290 391 I---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (513)
Q Consensus 391 ~---~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~ 425 (513)
. .......++.+..++.+++..+|..++.++..++
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 1 1123467889999999999999999999998775
No 78
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.28 E-value=9.7e-11 Score=107.64 Aligned_cols=293 Identities=13% Similarity=0.034 Sum_probs=172.7
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhcc
Q 010290 153 YPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL 232 (513)
Q Consensus 153 ~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 232 (513)
.+.++......++..+.+++++++...|+-+.-.+..+++. . +... ...+.+.+-++|+++.+|..|+.+++.+..
T Consensus 58 G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~-~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~- 133 (355)
T 3tjz_B 58 GEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-A-EDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD- 133 (355)
T ss_dssp TCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-S-SCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC-
T ss_pred CCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-H-HHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC-
Confidence 35667766778888889999999999999999999888876 3 3333 677888889999999999999999999874
Q ss_pred CChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhC
Q 010290 233 LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN 312 (513)
Q Consensus 233 ~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 312 (513)
.+....+.+.+.+.+.|.++.||..++-+..++....++ ....+++.+..++.|.++.|...|+..+..+.+. +
T Consensus 134 ---~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe--~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d 207 (355)
T 3tjz_B 134 ---STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD--VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-D 207 (355)
T ss_dssp ---TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH--HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-C
T ss_pred ---HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-c
Confidence 345677999999999999999999999888877533211 1246788888899999999998888888888753 2
Q ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhh
Q 010290 313 PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392 (513)
Q Consensus 313 ~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~ 392 (513)
.. ....+++.+... .-.++......++.+..+++.- .......+.+.+..+|+..++.|...|++++-.+.. .+..
T Consensus 208 ~~-a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~ 283 (355)
T 3tjz_B 208 RL-AVSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAK 283 (355)
T ss_dssp HH-HHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC--------
T ss_pred hH-HHHHHHHHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHH
Confidence 21 224444444321 1123444444555554444321 012346788889999999999999999999888754 2222
Q ss_pred hhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 010290 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKR 462 (513)
Q Consensus 393 ~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~ 462 (513)
. .......+..++.+++..+|..++..+..++...+ +.+ ...-..+..+++|++..++--|+.++-+
T Consensus 284 ~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P-~~v-~~~n~~ie~li~d~n~sI~t~Aittllk 350 (355)
T 3tjz_B 284 E-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP-SAV-TACNLDLENLVTDANRSIATLAITTLLK 350 (355)
T ss_dssp -----CCCTHHHHHHSSSSSSHHHHHHCC-----------------------------------------
T ss_pred H-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc-HHH-HHHHHHHHHHccCCcHhHHHHHHHHhhh
Confidence 2 23445667777888889999999999999887532 222 2355667889999999998888887644
No 79
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.26 E-value=2e-07 Score=98.63 Aligned_cols=446 Identities=10% Similarity=0.065 Sum_probs=254.7
Q ss_pred ccHHHHHHHhhcHHHHHHH----hChH---hhhhhhhhhhhh-ccC-----CchHHHHHHHHHhhcccccccCchhhhhh
Q 010290 21 DDIQLRLNSIRRLSTIARA----LGEE---RTRKELIPFLSE-NND-----DDDEVLLAMAEELGVFIPYVGGLEYANVL 87 (513)
Q Consensus 21 ~d~~~r~~a~~~l~~i~~~----~~~~---~~~~~l~~~l~~-~~~-----~~~~vr~~~~~~l~~~~~~~~~~~~~~~l 87 (513)
.++.+|..|+..|...... ++++ ..+..++.++.+ ..+ .++.++...+.++..+++..-+ ..|+.+
T Consensus 73 ~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P-~~Wp~f 151 (1073)
T 3gjx_A 73 QNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWP-KHWPTF 151 (1073)
T ss_dssp CSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTT-TTCTTH
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhCh-hhccHH
Confidence 3555566665555544432 3322 234455666555 222 3567888899999888775322 346666
Q ss_pred hHHHHHhhccchhHHHHHHHHHHHHHHhhcCh--------H-------HHH---hhHHHHHHHhh-cCCCcchhhhHHhh
Q 010290 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRE--------Q-------DVV---EHFIPLVKRLA-AGEWFTARVSSCGL 148 (513)
Q Consensus 88 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--------~-------~~~---~~~~~~l~~l~-~d~~~~~R~~~~~~ 148 (513)
++-+..+.+. ++..+...+..|..+.+.+.. . .+. +.+++++.... ...+......+..+
T Consensus 152 i~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~ 230 (1073)
T 3gjx_A 152 ISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLET 230 (1073)
T ss_dssp HHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 6666655543 345567778888887766321 0 111 12444444433 33455566667778
Q ss_pred hHhhcCCCCHH--HHHHHHHHH-HHHcCCCchHHHHHHHHhHHHHHHH-hhh-hhhHHHHH----HHHHHhh--------
Q 010290 149 FHVAYPSAPEA--LKTELRTIY-RQLCQDDMPMVRRSAATNLGKFAAT-VEA-AHLKSEIM----SIFEELT-------- 211 (513)
Q Consensus 149 l~~~~~~~~~~--~~~~l~~~l-~~l~~d~~~~vr~~a~~~l~~l~~~-~~~-~~~~~~l~----~~l~~l~-------- 211 (513)
++....-++.. ....+++.+ ...+. ++..|..|+++|..+... .+. +.....++ ..+..++
T Consensus 231 L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~ 308 (1073)
T 3gjx_A 231 LLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRL 308 (1073)
T ss_dssp HHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHH
T ss_pred HHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence 87777666555 235577766 56664 568999999999998864 211 11111111 1111111
Q ss_pred -----hccchhHHHHHHHHHHHhhcc-------CCh-hhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC-----
Q 010290 212 -----QDDQDSVRLLAVEGCGALGKL-------LEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG----- 273 (513)
Q Consensus 212 -----~d~~~~vr~~a~~~l~~l~~~-------~~~-~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----- 273 (513)
.+++.+.-..-...+..+++. -+. .......+..+..+...++..+-+.+......+...+-
T Consensus 309 ~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~ 388 (1073)
T 3gjx_A 309 AYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPF 388 (1073)
T ss_dssp HHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccc
Confidence 111112111122222222221 111 11122234445666667788787777777766655321
Q ss_pred ---CCc------------cccchHHHHHH-------hcC---------------------CCcH-HHHHHHHHhHHHHHh
Q 010290 274 ---PEP------------TRSDVVPAYVR-------LLR---------------------DNEA-EVRIAAAGKVTKICR 309 (513)
Q Consensus 274 ---~~~------------~~~~ll~~l~~-------~l~---------------------d~~~-~vr~~a~~~l~~~~~ 309 (513)
... ....+.|.+.+ .+. |.+. .++...-.++.. +.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~-lt 467 (1073)
T 3gjx_A 389 STSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVY-LT 467 (1073)
T ss_dssp CCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHH-HH
T ss_pred cccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHH-Hh
Confidence 000 01113333322 221 1111 122222223322 23
Q ss_pred hhChHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHHhchhhCHH---HHHHhHHHHHHHhcCCC-----ChHHHHHHH
Q 010290 310 ILNPELAIQHILPCVKELSS--DSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDE-----FPDVRLNII 379 (513)
Q Consensus 310 ~~~~~~~~~~l~~~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-----~~~vr~~a~ 379 (513)
.++++...+.+.+.+..... ..+|..+.+++.++++++..+..+ .+...+++.+..+...+ .+.++..++
T Consensus 468 ~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~ 547 (1073)
T 3gjx_A 468 HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIM 547 (1073)
T ss_dssp HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHH
Confidence 44555555666676655443 457999999999999999877642 34566777777776433 244666677
Q ss_pred HHHHHhhhhhhhh-hhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhh----------HHHHHHHHHHHHhcCc
Q 010290 380 SKLDQVNQVIGID-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----------FDDKLGALCMQWLKDK 448 (513)
Q Consensus 380 ~~l~~i~~~~~~~-~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~----------~~~~~~~~l~~~l~d~ 448 (513)
..+|+..+.+... .+.+.++..+.+.+.+++..+..+|+.++..++..++... +...++..+.....+=
T Consensus 548 ~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l 627 (1073)
T 3gjx_A 548 YIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDL 627 (1073)
T ss_dssp HHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTC
T ss_pred HHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhc
Confidence 8899888776543 2456777777788889999999999999999999887653 4445555555555565
Q ss_pred hhHHHHHHHHHHHHHHHHhChhh
Q 010290 449 VYSIRDAAANNVKRLAEEFGPDW 471 (513)
Q Consensus 449 ~~~VR~~a~~~l~~l~~~~~~~~ 471 (513)
.+.=.....+++|.++...+++.
T Consensus 628 ~~~~~~~lyeav~~vi~~~p~~~ 650 (1073)
T 3gjx_A 628 QPQQVHTFYEAVGYMIGAQTDQT 650 (1073)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCcc
Confidence 56666778888999998888653
No 80
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.22 E-value=1.1e-08 Score=106.04 Aligned_cols=338 Identities=13% Similarity=0.146 Sum_probs=236.2
Q ss_pred cchhhhHHhhhHhhcC-CCCHH-HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh----hhhHHHHHHHHHHhhh
Q 010290 139 FTARVSSCGLFHVAYP-SAPEA-LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA----AHLKSEIMSIFEELTQ 212 (513)
Q Consensus 139 ~~~R~~~~~~l~~~~~-~~~~~-~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~ 212 (513)
...|..++..+..+.. ..+.. ....++..+.+.+.++... +.++..+..++...+. +.+.-.++|.+.....
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 105 (986)
T 2iw3_A 28 ADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAG 105 (986)
T ss_dssp TTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhc
Confidence 3445555555554433 22221 1136888888888887544 8899999999976643 2222235677778888
Q ss_pred ccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhc
Q 010290 213 DDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLL 289 (513)
Q Consensus 213 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~~--~~~~ll~~l~~~l 289 (513)
|....||.+|-.+...+...+++... ..++|.+...+.+. .|..+.+++..++.++...+... ..++++|.+..++
T Consensus 106 dk~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 184 (986)
T 2iw3_A 106 NKDKEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETM 184 (986)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhc
Confidence 99999999999999999999998765 77899988877654 69999999999999998754322 2468999999999
Q ss_pred CCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhch-----hhCHHHHHHhHHHHHH
Q 010290 290 RDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP-----ILGKDATIEQLLPIFL 364 (513)
Q Consensus 290 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~-----~~~~~~~~~~l~~~l~ 364 (513)
-|..++|..+|..++..++..+++.++ ...+|.+...+.+++. +-.++..++. ... .....-+.|.+.
T Consensus 185 ~d~k~~v~~~~~~~~~~~~~~~~n~d~-~~~~~~~~~~~~~p~~-----~~~~~~~l~~~tfv~~v~-~~~l~~~~p~l~ 257 (986)
T 2iw3_A 185 WDTKKEVKAAATAAMTKATETVDNKDI-ERFIPSLIQCIADPTE-----VPETVHLLGATTFVAEVT-PATLSIMVPLLS 257 (986)
T ss_dssp TCSSHHHHHHHHHHHHHHGGGCCCTTT-GGGHHHHHHHHHCTTH-----HHHHHHHHTTCCCCSCCC-HHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHhcCCCcch-hhhHHHHHHHhcChhh-----hHHHHHHhhcCeeEeeec-chhHHHHHHHHH
Confidence 999999999999999999999888776 5667888888888854 3344444432 111 223457899999
Q ss_pred HhcCCCChHHHHHHHHHHHHhhhhhhhh----hhhhhHHHHHHHhhcC-CChhHHHHHHHHHHHHHHHhCh-h-------
Q 010290 365 SLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGV-G------- 431 (513)
Q Consensus 365 ~~l~d~~~~vr~~a~~~l~~i~~~~~~~----~~~~~l~~~l~~l~~~-~~~~vR~~~~~~l~~l~~~~~~-~------- 431 (513)
..|+++...+++.++-.+.++++-+... .+.+.++|.+...... .++.+|..+-.++..+.+..+. .
T Consensus 258 r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~~~~~~~~~~ 337 (986)
T 2iw3_A 258 RGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNVGEDDAIPEL 337 (986)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTCBTTTBCCCC
T ss_pred hhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 9999999999999999999998877543 3556777777776543 5799999999999888665433 1
Q ss_pred ---hHHHHHHHHHHHHhcCc-----hhHHHHHHHHHHHHHHHHhChh--hHhhhhHHHHHhhhcC
Q 010290 432 ---FFDDKLGALCMQWLKDK-----VYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVALIKSS 486 (513)
Q Consensus 432 ---~~~~~~~~~l~~~l~d~-----~~~VR~~a~~~l~~l~~~~~~~--~~~~~i~~~L~~~~~~ 486 (513)
.-...+...+...+... ...+..-++...+.+...-..+ ...+.+.|.|..+..+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (986)
T 2iw3_A 338 SHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHE 402 (986)
T ss_dssp CCTTCHHHHHHHHHHHTTTSCCCGGGHHHHHHHHHHHHHHHHTTCCSHHHHHHHTHHHHTTTSCH
T ss_pred cccchHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHhcch
Confidence 01223445555555432 1234444445555554432211 1136777887776653
No 81
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.22 E-value=8.6e-10 Score=102.79 Aligned_cols=216 Identities=11% Similarity=0.063 Sum_probs=155.7
Q ss_pred CHHHHHHHHHHHHHHHHHhCC--Ccc--ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH---HH-HHhhhhhhh
Q 010290 254 SWRVRYMVANQLYELCEAVGP--EPT--RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LA-IQHILPCVK 325 (513)
Q Consensus 254 ~~~vr~~~~~~l~~l~~~~~~--~~~--~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~-~~~l~~~l~ 325 (513)
++.++..++.+|.+++..-.. ... ....+|.+..++.+.+++++..|+.+|..+...-+.+ .+ ....+|.+.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 456888888888888632110 011 1245899999999999999999999999997531121 11 224577787
Q ss_pred hh-cCCCcHHHHHHHHHHHHHhchhhCH--HHH--HHhHHHHHHHhcCCCCh----HHHHHHHHHHHHhhhhh--hhh--
Q 010290 326 EL-SSDSSQHVRSALATVIMGMAPILGK--DAT--IEQLLPIFLSLLKDEFP----DVRLNIISKLDQVNQVI--GID-- 392 (513)
Q Consensus 326 ~~-~~d~~~~vr~~~~~~l~~l~~~~~~--~~~--~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~i~~~~--~~~-- 392 (513)
.+ ..+.+..++..++.++..++..... ..+ ....+|.+.+++.++.. .++..++.+|..+...+ +.+
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 75 4667889999999999988863321 222 24678999999987654 58999999998887521 111
Q ss_pred --hhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhCh---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh
Q 010290 393 --LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF 467 (513)
Q Consensus 393 --~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~ 467 (513)
......+|.+..++.+++..++..++.++..++..-.. .......+|.+..++.+++..+|+.|+.+|..|+..-
T Consensus 257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 12245789999999999999999999999999742111 1122347899999999999999999999999999864
Q ss_pred Ch
Q 010290 468 GP 469 (513)
Q Consensus 468 ~~ 469 (513)
..
T Consensus 337 ~~ 338 (354)
T 3nmw_A 337 PA 338 (354)
T ss_dssp CG
T ss_pred HH
Confidence 43
No 82
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.21 E-value=1.4e-08 Score=80.71 Aligned_cols=216 Identities=16% Similarity=0.154 Sum_probs=147.1
Q ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcccc
Q 010290 200 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS 279 (513)
Q Consensus 200 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 279 (513)
-..++.-+..++.|.-|.|+..|+..+..+++.+++- +.+.+-..+.-+..++.-..-...++++|.++..-++. ..
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el-~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~--v~ 106 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDL-YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL--VK 106 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGG-HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH--HH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHH-HHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH--HH
Confidence 3456666677888888899999999888888776541 11212222222345666667778888888887652111 24
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhH
Q 010290 280 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQL 359 (513)
Q Consensus 280 ~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 359 (513)
.++|.+.....-.++.+|.....+|+.+.... ++ ....+..-+..++++++..=|.+++..++.++... ..+...+
T Consensus 107 ~vVp~lfanyrigd~kikIn~~yaLeeIaran-P~-l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~--~~yv~Pf 182 (253)
T 2db0_A 107 SMIPVLFANYRIGDEKTKINVSYALEEIAKAN-PM-LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS--FKYVNPF 182 (253)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC-HH-HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT--HHHHGGG
T ss_pred hhHHHHHHHHhcCCccceecHHHHHHHHHHhC-hH-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC--ccccCcc
Confidence 57788877777778888988888888888753 33 23455566667778888888888888888876532 2234567
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 010290 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (513)
Q Consensus 360 ~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~ 425 (513)
+|.+..+|.|.+..||..+.++|+.++..-. .+.+.+...+.++ +|++..+....-+.++.+.
T Consensus 183 LprL~aLL~D~deiVRaSaVEtL~~lA~~np--klRkii~~kl~e~-~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 183 LPRIINLLHDGDEIVRASAVEALVHLATLND--KLRKVVIKRLEEL-NDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH--HHHHHHHHHHHHC-CCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCcchhhhHHHHHHHHHHHHcCH--HHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999988877422 2334444444443 6777777777777776664
No 83
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=99.20 E-value=2e-10 Score=107.49 Aligned_cols=257 Identities=12% Similarity=0.078 Sum_probs=171.9
Q ss_pred HHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHH
Q 010290 164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHIL 243 (513)
Q Consensus 164 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 243 (513)
+.+.+..-+-|+.|++|..|+-+|.++.+..|...-.. -..+.+-.+|..++-++.+++.+.+++..
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~--------~~~N~DLAvRLLCVLALDRFGDYVSDqVV----- 241 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ--------IRVDSKLFSKIYEILVTDKFNDFVDDRTV----- 241 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC--------CCCCTTHHHHHHHHHHHBCCBBCSSSSCB-----
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee--------ccccHHHHHHHHHHHHhccccccccCeee-----
Confidence 67777888889999999999999999998776421110 11122446777777777777766555332
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhh
Q 010290 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPC 323 (513)
Q Consensus 244 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~ 323 (513)
..||++++++|+.+ ..++.+ -.++..++..+..+.|+||.+++-.+.-+.+.+.. .+.++|.
T Consensus 242 -----------APVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~a 303 (800)
T 3oc3_A 242 -----------APVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRK 303 (800)
T ss_dssp -----------CHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHH
T ss_pred -----------eehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHH
Confidence 23899999999998 666555 24444444555777889999888888776333322 4677788
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Q 010290 324 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 403 (513)
Q Consensus 324 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~ 403 (513)
+...++|.+..||..++.++..++..-.-+.....++..+.++ |+-..--..++..|+.++..-......+.++|.+.
T Consensus 304 VL~GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~L--DDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~ 381 (800)
T 3oc3_A 304 LVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESE--ELISVSKTSNLSLLTKIYRENPELSIPPERLKDIF 381 (800)
T ss_dssp HHHHTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTC--CSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTG
T ss_pred HHhhcCCcccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhh--cccchhhHHHHHHHHHHHcCCcccccChHHHHHHH
Confidence 8888889999999999999888882211222233444444433 33233334455566666553321112247889999
Q ss_pred HhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHH-HhcCchhHHHHHHHHHHH
Q 010290 404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ-WLKDKVYSIRDAAANNVK 461 (513)
Q Consensus 404 ~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~-~l~d~~~~VR~~a~~~l~ 461 (513)
.++.++-..||.+++.++..+. ...++..+.+ ++-+++.+|+..+.+++.
T Consensus 382 PFLRHtITSVR~AVL~TL~tfL--------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 382 PCFTSPVPEVRTSILNMVKNLS--------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GGGTCSSHHHHHHHHHHTTTCC--------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred hhhcCCcHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999999999999987665 1235555555 677889999999999885
No 84
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.18 E-value=2.8e-09 Score=93.19 Aligned_cols=178 Identities=13% Similarity=0.161 Sum_probs=134.7
Q ss_pred HhcCCCcHHHHHHHHHhHHHHHhhhChHHH---HHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHH------HHHH
Q 010290 287 RLLRDNEAEVRIAAAGKVTKICRILNPELA---IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD------ATIE 357 (513)
Q Consensus 287 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~------~~~~ 357 (513)
..+-+.+..-|.+|+..|....+.. ++.. .+.+++.+.-.+.|++..+-..++..+..+...++.. ....
T Consensus 53 ~~lfs~d~k~~~~ale~L~~~l~~~-~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~ 131 (266)
T 2of3_A 53 SQLFHKDFKQHLAALDSLVRLADTS-PRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVS 131 (266)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHHHC-HHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhhhC-hHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 3334455666666666666555432 2221 1223444433345789999999999988887655432 1235
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHH
Q 010290 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 437 (513)
Q Consensus 358 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~ 437 (513)
.++|.+..-++|....||..+-..+..+....+. ..+.+.+.+.+++.||++|..++..++.+....|... ...
T Consensus 132 ~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~~~ 205 (266)
T 2of3_A 132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--LKS 205 (266)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--GGG
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--ccc
Confidence 7899999999999999999999999888776554 4577778888899999999999999999999988762 346
Q ss_pred H---HHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh
Q 010290 438 G---ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW 471 (513)
Q Consensus 438 ~---~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~ 471 (513)
+ |.+.++++|++.+||.+|++++..+....|+..
T Consensus 206 l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 206 LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp GCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 7 999999999999999999999999999999764
No 85
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.18 E-value=2.6e-07 Score=97.81 Aligned_cols=438 Identities=8% Similarity=-0.005 Sum_probs=238.9
Q ss_pred cCCchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhh----cCh---HHHHhhHHHH
Q 010290 57 NDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQ----MRE---QDVVEHFIPL 129 (513)
Q Consensus 57 ~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~----~~~---~~~~~~~~~~ 129 (513)
.+++++.|+.|-..|..+-+. +..|.....++ ..+.++.+|..|+..|...++. +++ ..++..++..
T Consensus 38 y~p~~~~r~qA~~~L~q~q~s---p~aw~~~~~iL---~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~ 111 (1073)
T 3gjx_A 38 YHGEGAQQRMAQEVLTHLKEH---PDAWTRVDTIL---EFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGL 111 (1073)
T ss_dssp TCSSHHHHHHHHHHHHTSSCC---SCHHHHHTCC------CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHcC---chHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHH
Confidence 345566677777777665442 22333333322 1234667777777777776653 333 2345556666
Q ss_pred HHHhhcCC-----CcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh---h----
Q 010290 130 VKRLAAGE-----WFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---A---- 197 (513)
Q Consensus 130 l~~l~~d~-----~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~---- 197 (513)
+.+...++ +..++...+.+++.++...-++.|+++++.+..+++. ++..+......|..+.+.+.. .
T Consensus 112 l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~ 190 (1073)
T 3gjx_A 112 IIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQ 190 (1073)
T ss_dssp HHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCH
T ss_pred HHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccH
Confidence 66654332 3444555566666555442223345555555555542 334455556666666554321 0
Q ss_pred -----------hhHHHHHHHHHHhhh-ccchhHHHHHHHHHHHhhccCChhhhh-hhHHHHH-HHhcCCCCHHHHHHHHH
Q 010290 198 -----------HLKSEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEPQDCV-AHILPVI-VNFSQDKSWRVRYMVAN 263 (513)
Q Consensus 198 -----------~~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~l~~~l-~~~~~d~~~~vr~~~~~ 263 (513)
...+.+++.+...+. ..++.+...++++++.+...++...+. +.+++.+ ...+. ++..|.++++
T Consensus 191 ~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~d 268 (1073)
T 3gjx_A 191 VKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLK 268 (1073)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHH
Confidence 012345666655554 356778888999999999888765433 4477776 46664 4679999999
Q ss_pred HHHHHHHHhCCCccccchHHHH-------HHhc-------------CCCcHHHHHHHHHhHHHHHhhhC------hH--H
Q 010290 264 QLYELCEAVGPEPTRSDVVPAY-------VRLL-------------RDNEAEVRIAAAGKVTKICRILN------PE--L 315 (513)
Q Consensus 264 ~l~~l~~~~~~~~~~~~ll~~l-------~~~l-------------~d~~~~vr~~a~~~l~~~~~~~~------~~--~ 315 (513)
+|..+... ..+.+.+.+...+ ...+ .+.+.+.-..-+..+..+++... ++ .
T Consensus 269 cL~eIv~k-~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~ 347 (1073)
T 3gjx_A 269 CLTEIAGV-SVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLRE 347 (1073)
T ss_dssp HHHHHHHS-CSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHhc-cccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchH
Confidence 99998764 1111222221111 1111 23333433333344444333221 11 1
Q ss_pred HHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHH--------------------HH-------HHhHHHHHHHhcC
Q 010290 316 AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--------------------AT-------IEQLLPIFLSLLK 368 (513)
Q Consensus 316 ~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--------------------~~-------~~~l~~~l~~~l~ 368 (513)
.....+.++..+...++..+-......+..+...+-.+ .. ...+...+...+.
T Consensus 348 ~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~ 427 (1073)
T 3gjx_A 348 ALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMA 427 (1073)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcC
Confidence 11222334455556677777666666666665433211 01 1222222333222
Q ss_pred CC---------------------Ch-HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcC--CChhHHHHHHHHHHHH
Q 010290 369 DE---------------------FP-DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLL 424 (513)
Q Consensus 369 d~---------------------~~-~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~--~~~~vR~~~~~~l~~l 424 (513)
-+ +. .++...-.+|..+ ..++.+.....+++.+.+.+.. .+|..+.+++.+++++
T Consensus 428 ~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~l-t~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaI 506 (1073)
T 3gjx_A 428 KPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYL-THLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSI 506 (1073)
T ss_dssp CSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHT
T ss_pred CCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHH
Confidence 10 00 1222222333332 2334444446666777665443 4699999999999999
Q ss_pred HHHhChh---hHHHHHHHHHHHHhcCc-----hhHHHHHHHHHHHHHHHHhChhhH-hhhhHHHHHhhhcCcc-hHHHHH
Q 010290 425 ASQLGVG---FFDDKLGALCMQWLKDK-----VYSIRDAAANNVKRLAEEFGPDWA-MQHIVPQVALIKSSRN-LVLNSV 494 (513)
Q Consensus 425 ~~~~~~~---~~~~~~~~~l~~~l~d~-----~~~VR~~a~~~l~~l~~~~~~~~~-~~~i~~~L~~~~~~~~-~~~r~~ 494 (513)
+..+.++ .+...+++.++.+...+ .+.|+...+.++|+..+.+..++. .+.++..|.+...+++ -+..++
T Consensus 507 ag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA 586 (1073)
T 3gjx_A 507 SGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMA 586 (1073)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHH
T ss_pred HCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8776642 45566788888777543 455777777899998877655442 4677777777766654 567788
Q ss_pred HHHHHHhcccc
Q 010290 495 LSLLKNAGIDA 505 (513)
Q Consensus 495 ~~~~~~i~~~~ 505 (513)
..++..|+.+.
T Consensus 587 ~~af~~i~~~C 597 (1073)
T 3gjx_A 587 CDTFIKIAQKC 597 (1073)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 88887776553
No 86
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.17 E-value=6e-08 Score=105.65 Aligned_cols=470 Identities=10% Similarity=0.017 Sum_probs=264.1
Q ss_pred CCCcHHHHHHHhcCc--cHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhhccCCchHHHHHHHHHhhccccc----ccC
Q 010290 7 PLYPIAVLIDELKND--DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGG 80 (513)
Q Consensus 7 ~~~~i~~l~~~l~~~--d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~----~~~ 80 (513)
.+..+..+++.+.++ |...|.+|-+.|.++-.. |+ .+..+.-.+. -.+.++.+|..++..|.+.++. +..
T Consensus 9 ~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p~-~~~~~~~~L~-~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~ 84 (1204)
T 3a6p_A 9 LCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--CP-ICVPCGLRLA-EKTQVAIVRHFGLQILEHVVKFRWNGMSR 84 (1204)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--CT-THHHHHHHHT-STTSCHHHHHHHHHHHHHHHHHSGGGSCH
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--ch-HHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHHhcccCCH
Confidence 344566666666665 777899999888776432 11 1222222222 1355788999999999876642 111
Q ss_pred c---hhhhhhhHHHHHhhc---cchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcC
Q 010290 81 L---EYANVLLPPLETLCT---VEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYP 154 (513)
Q Consensus 81 ~---~~~~~l~~~l~~l~~---~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~ 154 (513)
+ .....++..+..... +.+..||.....++..++..--+ .....+++.+.++.+. +...+..+..++..+.+
T Consensus 85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 1 122333443332211 14688999999999999887433 2245566666666554 33456667777666543
Q ss_pred C------CCHHH-----------HHHHHHHHHHHcCC-------------------CchHHHHHHHHhHHHHHHHhhhhh
Q 010290 155 S------APEAL-----------KTELRTIYRQLCQD-------------------DMPMVRRSAATNLGKFAATVEAAH 198 (513)
Q Consensus 155 ~------~~~~~-----------~~~l~~~l~~l~~d-------------------~~~~vr~~a~~~l~~l~~~~~~~~ 198 (513)
. ..... .+++++.+...+++ ++..++..+.+++..+..+++...
T Consensus 163 ev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~ 242 (1204)
T 3a6p_A 163 DVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSH 242 (1204)
T ss_dssp HHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHH
T ss_pred HHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHH
Confidence 1 11111 12444555444432 234566777777776666555433
Q ss_pred hHH---HHHHHHHHhhhccchhHHHHHHHHHHHhhccCC-hhh---hhhhH----HHHHHHhc--------CCCCHHHHH
Q 010290 199 LKS---EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE-PQD---CVAHI----LPVIVNFS--------QDKSWRVRY 259 (513)
Q Consensus 199 ~~~---~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-~~~---~~~~l----~~~l~~~~--------~d~~~~vr~ 259 (513)
..+ .+++.+..++.+ +.+|..|++++..+..... +++ +...+ +..+.... .+.+..+++
T Consensus 243 i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k 320 (1204)
T 3a6p_A 243 ITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLK 320 (1204)
T ss_dssp HHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHH
T ss_pred HHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHH
Confidence 322 377777766664 6799999999999987643 221 11111 11222221 222455666
Q ss_pred HHHHHHHHHHHHhC----------CCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhC--h-H---HHHHhhhhh
Q 010290 260 MVANQLYELCEAVG----------PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN--P-E---LAIQHILPC 323 (513)
Q Consensus 260 ~~~~~l~~l~~~~~----------~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~--~-~---~~~~~l~~~ 323 (513)
.+++.+..++.... .......+++.++.++.+++..|-..++..+..+.+... . + .+...+++.
T Consensus 321 ~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~v 400 (1204)
T 3a6p_A 321 RLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRA 400 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 66666555542211 122235789999999999998888888888887766532 1 1 233444444
Q ss_pred hh---hhc---CCC---------------------cHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCC------
Q 010290 324 VK---ELS---SDS---------------------SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE------ 370 (513)
Q Consensus 324 l~---~~~---~d~---------------------~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~------ 370 (513)
+. .-+ .+. -+..|......+..++...+. .....+.+.+...+.+.
T Consensus 401 l~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~-~~l~~v~~~l~~~l~~~l~~~~~ 479 (1204)
T 3a6p_A 401 SMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPK-TSFQMAGEWLKYQLSTFLDAGSV 479 (1204)
T ss_dssp HHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHTCC------
T ss_pred HHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHhhhhccccc
Confidence 41 111 100 135677777777666654432 22344445554443321
Q ss_pred -------------------ChHHHHHHHHHHHHhhhhhh----hhhhhhhHHHHHHHhh---cCCChhHHHHHHHHHHHH
Q 010290 371 -------------------FPDVRLNIISKLDQVNQVIG----IDLLSQSLLPAIVELA---EDRHWRVRLAIIEYIPLL 424 (513)
Q Consensus 371 -------------------~~~vr~~a~~~l~~i~~~~~----~~~~~~~l~~~l~~l~---~~~~~~vR~~~~~~l~~l 424 (513)
......+....++.+.+.+. .+.....+.+.+...+ +..+..+|...+.+++.+
T Consensus 480 ~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l 559 (1204)
T 3a6p_A 480 NSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSAL 559 (1204)
T ss_dssp -----------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 11223444444554444331 1111112344444432 335778999999999888
Q ss_pred HHHhCh-hhHHHHHHHHHHHHhcC------------chhHHHHHHHHHHHHHHHHhChhhH--hhhhHHHHHhhhc
Q 010290 425 ASQLGV-GFFDDKLGALCMQWLKD------------KVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVALIKS 485 (513)
Q Consensus 425 ~~~~~~-~~~~~~~~~~l~~~l~d------------~~~~VR~~a~~~l~~l~~~~~~~~~--~~~i~~~L~~~~~ 485 (513)
...+.. ..+...+++.++..+.+ .+.+||.+|+.++..++...+.... .+.+...+..++.
T Consensus 560 ~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~ 635 (1204)
T 3a6p_A 560 FPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLS 635 (1204)
T ss_dssp GGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 776542 23445577777777666 4668999999999999998876543 2555555555454
No 87
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.15 E-value=3.5e-09 Score=92.63 Aligned_cols=173 Identities=12% Similarity=0.101 Sum_probs=133.1
Q ss_pred CCCcchhhhHHhhhHhhcCCCCHHH---HHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhh------hhHHHHHHH
Q 010290 136 GEWFTARVSSCGLFHVAYPSAPEAL---KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA------HLKSEIMSI 206 (513)
Q Consensus 136 d~~~~~R~~~~~~l~~~~~~~~~~~---~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~~ 206 (513)
++++..|..++..+....+..+.+. .+-++..+.-.+.|.++.|-..+++.+..+...++.. .-...++|.
T Consensus 57 s~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~ 136 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPY 136 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 3455666666666555443322221 1223444443455889999999999999988766542 224678999
Q ss_pred HHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchH---H
Q 010290 207 FEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV---P 283 (513)
Q Consensus 207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll---~ 283 (513)
+..-+.|+.+.||..+-..+..+...+++. .+.+.+.+.+.+.+|++|..++..++.+...+|.. ....+ |
T Consensus 137 LveKlGd~k~~vR~~~r~il~~l~~v~~~~----~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~~~l~~~~ 210 (266)
T 2of3_A 137 LLLKTGEAKDNMRTSVRDIVNVLSDVVGPL----KMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--PLKSLSVEK 210 (266)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GGGGGCHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--ccccccchH
Confidence 999999999999999999998888776653 46777778889999999999999999999999987 35577 9
Q ss_pred HHHHhcCCCcHHHHHHHHHhHHHHHhhhChH
Q 010290 284 AYVRLLRDNEAEVRIAAAGKVTKICRILNPE 314 (513)
Q Consensus 284 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 314 (513)
.+..++.|++..||.+|+.++..+....|..
T Consensus 211 ~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 211 TVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp HHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999888765
No 88
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.14 E-value=5.6e-08 Score=77.26 Aligned_cols=216 Identities=16% Similarity=0.184 Sum_probs=148.8
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhh
Q 010290 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAH 241 (513)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 241 (513)
.+++..+..+++|+-|.|++.+...+..+++..+. ...+.+-.++.-+-.++.-..-.....++|.++..-|+ ....
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e-l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe--~v~~ 107 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--LVKS 107 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH--HHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH-HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH--HHHh
Confidence 45777888888898999999999988888876643 22222222222223455445555666777777765333 3556
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhh
Q 010290 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHIL 321 (513)
Q Consensus 242 l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~ 321 (513)
++|.+.....-.++++|-....+|+.++..-+.- ...+..-+..++.+++..=|.+|+..++.+++. ...+....+
T Consensus 108 vVp~lfanyrigd~kikIn~~yaLeeIaranP~l--~~~v~rdi~smltskd~~Dkl~aLnFi~alGen--~~~yv~PfL 183 (253)
T 2db0_A 108 MIPVLFANYRIGDEKTKINVSYALEEIAKANPML--MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN--SFKYVNPFL 183 (253)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH--HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT--THHHHGGGH
T ss_pred hHHHHHHHHhcCCccceecHHHHHHHHHHhChHH--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc--CccccCcch
Confidence 7888887777778889999999999998651110 123444556678888888888888877777653 223446677
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q 010290 322 PCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (513)
Q Consensus 322 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~ 387 (513)
|.+..++.|.+.-||.++++++..++..-++ ...++..-++-++|...-|...+-..|+.+.-
T Consensus 184 prL~aLL~D~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 184 PRIINLLHDGDEIVRASAVEALVHLATLNDK---LRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999864332 23344444566788888888888888887643
No 89
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.14 E-value=3.3e-09 Score=98.82 Aligned_cols=214 Identities=12% Similarity=0.044 Sum_probs=152.6
Q ss_pred chhHHHHHHHHHHHhhccCCh--hhh--hhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC----ccccchHHHHH
Q 010290 215 QDSVRLLAVEGCGALGKLLEP--QDC--VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRSDVVPAYV 286 (513)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~~~~--~~~--~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~ll~~l~ 286 (513)
++.++..|+.+|..++..-.. ..+ ...++|.+..++.+++..++..++.+|.+++..-..+ ......+|.+.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 467888899999988854321 112 1236889999998888999999999999986431111 11234678888
Q ss_pred Hh-cCCCcHHHHHHHHHhHHHHHhhhC--hHHH--HHhhhhhhhhhcCCCcH----HHHHHHHHHHHHhchhh--CHHH-
Q 010290 287 RL-LRDNEAEVRIAAAGKVTKICRILN--PELA--IQHILPCVKELSSDSSQ----HVRSALATVIMGMAPIL--GKDA- 354 (513)
Q Consensus 287 ~~-l~d~~~~vr~~a~~~l~~~~~~~~--~~~~--~~~l~~~l~~~~~d~~~----~vr~~~~~~l~~l~~~~--~~~~- 354 (513)
++ ++..++++++.|+.+|..++...+ ...+ ....+|.+..++.+.+. .++..++.++..++... +.+.
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 86 456678899999888888876321 1122 24567888888765543 58888888888887521 2211
Q ss_pred --H-HHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhh-hhh--hhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q 010290 355 --T-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV-IGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 428 (513)
Q Consensus 355 --~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~-~~~--~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~ 428 (513)
+ ....+|.+.++|++++..++..|+.+|..++.. -.. .......+|.|.+++.+++..+|..++.++..++..-
T Consensus 257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 1 134789999999999999999999999999742 111 1233567899999999999999999999999998763
No 90
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.10 E-value=3.8e-09 Score=95.70 Aligned_cols=186 Identities=10% Similarity=0.091 Sum_probs=139.5
Q ss_pred chHHHHHHhcCCC------------cHHHHHHHHHhHHHHHhhhChH--HHHHhhhhhhhh-hcCCCcHHHHHHHHHHHH
Q 010290 280 DVVPAYVRLLRDN------------EAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKE-LSSDSSQHVRSALATVIM 344 (513)
Q Consensus 280 ~ll~~l~~~l~d~------------~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~-~~~d~~~~vr~~~~~~l~ 344 (513)
+.++..+..+.++ +.+-|..|+..|..+++..+.. ......+|.+.. ++.+++..+|..++++++
T Consensus 28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg 107 (296)
T 1xqr_A 28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIG 107 (296)
T ss_dssp HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4455555555554 2346777888888887754322 112245677778 889999999999999999
Q ss_pred HhchhhC---HHHHHHhHHHHHHHhcC-CCChHHHHHHHHHHHHhhhhhhh--hh-hhhhHHHHHHHhhcCCChhHHHHH
Q 010290 345 GMAPILG---KDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGI--DL-LSQSLLPAIVELAEDRHWRVRLAI 417 (513)
Q Consensus 345 ~l~~~~~---~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~i~~~~~~--~~-~~~~l~~~l~~l~~~~~~~vR~~~ 417 (513)
.++..-. ........+|.+.++|+ +++..+|..|+++|+.++..... +. .....+|.|..++++++..+|..+
T Consensus 108 ~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A 187 (296)
T 1xqr_A 108 TCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKS 187 (296)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 9985322 12223467899999998 45789999999999999864322 22 234688999999999999999999
Q ss_pred HHHHHHHHHHhChh----hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 010290 418 IEYIPLLASQLGVG----FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (513)
Q Consensus 418 ~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~ 466 (513)
+++++.++.. +++ .....++|.+..++.++++.||..++.+++.|...
T Consensus 188 ~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 188 AFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999876 332 23345899999999999999999999999999875
No 91
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.09 E-value=3.3e-09 Score=96.24 Aligned_cols=183 Identities=11% Similarity=0.072 Sum_probs=125.5
Q ss_pred HHHhcCCCcHHHHHHHHHhHHHHHhhhChHHH-------HHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHH----
Q 010290 285 YVRLLRDNEAEVRIAAAGKVTKICRILNPELA-------IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---- 353 (513)
Q Consensus 285 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~-------~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---- 353 (513)
+..-+.+.+|..|..|+..+..++........ ...+.+.+...+.|.|..+...++.++..++..++..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 34455666666666666666555543221110 1233455566667888888888888887777655432
Q ss_pred ----HHHHhHHHHHH-HhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q 010290 354 ----ATIEQLLPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 428 (513)
Q Consensus 354 ----~~~~~l~~~l~-~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~ 428 (513)
.....++|.+. +.+.|....+|..+..++-.+++..+. ...++..+...+++.++.+|..++.++..+...+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 12345667666 468999999999999988887765432 1446677777889999999999999999999887
Q ss_pred Chhh-----HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh
Q 010290 429 GVGF-----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 470 (513)
Q Consensus 429 ~~~~-----~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 470 (513)
|... ..+.+++.+.+++.|++++||.+|.++++.+...+|+.
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 7643 23456777888999999999999999999999999864
No 92
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.06 E-value=6e-09 Score=95.81 Aligned_cols=307 Identities=13% Similarity=0.080 Sum_probs=160.6
Q ss_pred hcCc--cHHHHHHHhhcHHHHHHHhChHhh---hhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccCchhhhhhhHHH
Q 010290 18 LKND--DIQLRLNSIRRLSTIARALGEERT---RKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPL 91 (513)
Q Consensus 18 l~~~--d~~~r~~a~~~l~~i~~~~~~~~~---~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l 91 (513)
+.+. |+..+..+++.+..+- ..|.... ...+.+.+.+ +.+++.+.|+..--.+..+++. .++.. ...+.+
T Consensus 34 fn~~~~~~~kc~~~l~kll~l~-~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~--~~e~i-Lv~Nsl 109 (355)
T 3tjz_B 34 FNETPINPRKCAHILTKILYLI-NQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI--AEDVI-IVTSSL 109 (355)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHH-HHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT--SSCGG-GGHHHH
T ss_pred hcCCCCcHHHHHHHHHHHHHHH-HCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC--HHHHH-HHHHHH
Confidence 4444 5554455555554432 2232211 2244555555 7789999999999998888775 23333 556777
Q ss_pred HHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHH
Q 010290 92 ETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQL 171 (513)
Q Consensus 92 ~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l 171 (513)
.+-++++++.+|..|+.+++.+.. +.+.+.+.+.+.+...|.++.+|..|+-+...++...++ ....+++.+.++
T Consensus 110 ~kDl~~~N~~iR~lALRtL~~I~~----~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe-~v~~~~~~l~~l 184 (355)
T 3tjz_B 110 TKDMTGKEDSYRGPAVRALCQITD----STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD-VVKRWVNEAQEA 184 (355)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCC----TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH-HHHTTHHHHHHH
T ss_pred HhhcCCCcHhHHHHHHHHHhcCCC----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH-HHHHHHHHHHHH
Confidence 777789999999999999988854 334567788899999999999999999988888876544 345678888889
Q ss_pred cCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChh--hhhhhHHHHHHHh
Q 010290 172 CQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNF 249 (513)
Q Consensus 172 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~ 249 (513)
+.|.++.|...+...+..+.+.- ......+++.+.+. .-.++......++.+..++ +.+ .....+++.+...
T Consensus 185 l~d~n~~V~~~Al~lL~ei~~~d--~~a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~---~~d~~~~~~~~~~~l~~~ 258 (355)
T 3tjz_B 185 ASSDNIMVQYHALGLLYHVRKND--RLAVSKMISKFTRH-GLKSPFAYCMMIRVASRQL---EDEDGSRDSPLFDFIESC 258 (355)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC--------------------CC
T ss_pred hcCCCccHHHHHHHHHHHHHhhc--hHHHHHHHHHHhcC-CCcChHHHHHHHHHHHHhc---cccchhhHHHHHHHHHHH
Confidence 99999999887777777776531 11233444433221 0012333333333332222 221 2235577777777
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcC
Q 010290 250 SQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSS 329 (513)
Q Consensus 250 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 329 (513)
+++.++.|...+++++-.+... +... .......+..++..+++++|-.|+..+..+....+ ...+..-..+..+++
T Consensus 259 L~~~~~aVvyEa~k~I~~l~~~-~~~~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P--~~v~~~n~~ie~li~ 334 (355)
T 3tjz_B 259 LRNKHEMVVYEAASAIVNLPGC-SAKE-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP--SAVTACNLDLENLVT 334 (355)
T ss_dssp CCCSSHHHHHHHHHHHTC-------------CCCTHHHHHHSSSSSSHHHHHHCC-------------------------
T ss_pred HcCCChHHHHHHHHHHHhccCC-CHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc--HHHHHHHHHHHHHcc
Confidence 8888888888888877776541 1111 12233444555666777788888887777766422 122334445556667
Q ss_pred CCcHHHHHHHHHHH
Q 010290 330 DSSQHVRSALATVI 343 (513)
Q Consensus 330 d~~~~vr~~~~~~l 343 (513)
|++..++.-|+.++
T Consensus 335 d~n~sI~t~Aittl 348 (355)
T 3tjz_B 335 DANRSIATLAITTL 348 (355)
T ss_dssp --------------
T ss_pred CCcHhHHHHHHHHh
Confidence 77777766666554
No 93
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=99.02 E-value=6e-09 Score=97.78 Aligned_cols=242 Identities=12% Similarity=0.035 Sum_probs=164.3
Q ss_pred hhHHHHHhhccchhHHHHHHHHHHHHHHhhcChH------HHHhhHHHHHHHhh--------cCCC-cchhhhHHhhhHh
Q 010290 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ------DVVEHFIPLVKRLA--------AGEW-FTARVSSCGLFHV 151 (513)
Q Consensus 87 l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~------~~~~~~~~~l~~l~--------~d~~-~~~R~~~~~~l~~ 151 (513)
+...|..-+-++.+++|+.|+-+|.++.+..+.. .-......++.-++ +|.. ..+|.++++.++.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 5555655556899999999999999998876421 00011222222221 2332 6899999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhc
Q 010290 152 AYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGK 231 (513)
Q Consensus 152 ~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~ 231 (513)
+ .+.+++ -.++..+...+..+.|+||..+.-+|.-+...+.. .+.++|.+...++|.+++||..|+.+|.-++.
T Consensus 255 L-~hLp~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~ 328 (800)
T 3oc3_A 255 I-YPLIGP--NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFPI 328 (800)
T ss_dssp H-TTTSCS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSCC
T ss_pred H-HhCChh--HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhcc
Confidence 9 888877 23444444556788999999999999888333321 67888999999999999999999999988881
Q ss_pred cCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhh
Q 010290 232 LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 311 (513)
Q Consensus 232 ~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 311 (513)
.-.-......+...+.++ .|-+. -..+++..|+.++..-......+.++|-+..++.++-++||.++++++..+.
T Consensus 329 p~~l~~LL~iLWd~L~~L-DDLSA-STgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL--- 403 (800)
T 3oc3_A 329 TDSLDLVLEKCWKNIESE-ELISV-SKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS--- 403 (800)
T ss_dssp SSTHHHHHHHHHHHHHTC-CSCCT-THHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC---
T ss_pred hhhHHHHHHHHHHHhhhh-cccch-hhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH---
Confidence 111112223334444444 33332 3455667777777654332334589999999999999999999999987776
Q ss_pred ChHHHHHhhhhhh-hhhcCCCcHHHHHHHHHHHH
Q 010290 312 NPELAIQHILPCV-KELSSDSSQHVRSALATVIM 344 (513)
Q Consensus 312 ~~~~~~~~l~~~l-~~~~~d~~~~vr~~~~~~l~ 344 (513)
. ..++..+ ..++-+++..++..+.+.+.
T Consensus 404 ~-----~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 404 E-----ESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp C-----HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred h-----hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1 2233333 45556788888888888875
No 94
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.01 E-value=3.6e-08 Score=89.26 Aligned_cols=172 Identities=13% Similarity=0.120 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHHhhccCChhh--hhhhHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcC
Q 010290 217 SVRLLAVEGCGALGKLLEPQD--CVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLR 290 (513)
Q Consensus 217 ~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~ll~~l~~~l~ 290 (513)
+-|..|+..|..+++...... .....+|.+.. +++++++.+|..++++|++++..-. ........+|.++.+++
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 456777777777776543211 12236788888 9999999999999999999985311 11122457889999998
Q ss_pred -CCcHHHHHHHHHhHHHHHhhhCh--HHHH-HhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCH---HHHHHhHHHHH
Q 010290 291 -DNEAEVRIAAAGKVTKICRILNP--ELAI-QHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIF 363 (513)
Q Consensus 291 -d~~~~vr~~a~~~l~~~~~~~~~--~~~~-~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l 363 (513)
+++..+|..|+++|+.++....+ +.+. ...+|.+..++.+++..++..+++++..++..... ......++|.+
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L 214 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence 45789999999999999874322 2222 35678888888999999999999999999865221 22335688999
Q ss_pred HHhcCCCChHHHHHHHHHHHHhhhh
Q 010290 364 LSLLKDEFPDVRLNIISKLDQVNQV 388 (513)
Q Consensus 364 ~~~l~d~~~~vr~~a~~~l~~i~~~ 388 (513)
..+|.+++..||..++.+|+.+...
T Consensus 215 v~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 215 VALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999875
No 95
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=99.00 E-value=4.3e-08 Score=82.65 Aligned_cols=139 Identities=19% Similarity=0.181 Sum_probs=113.3
Q ss_pred HhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHH-HcCCCchHHHHHHHHhHHHHHHHhhhhhhHH
Q 010290 123 VEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQ-LCQDDMPMVRRSAATNLGKFAATVEAAHLKS 201 (513)
Q Consensus 123 ~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~-l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 201 (513)
.+.++++...+..++...+|..|+.+++.. . ....+++.+.. +..|++|.||..++.+++.++...+++.
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--- 139 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--- 139 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence 345778888889999999999999988877 3 12567888887 7889999999999999999997555543
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 010290 202 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (513)
Q Consensus 202 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 271 (513)
.++.+.....|++..||..|++.+...+...........++|.+..+..|+++.||++++..|..+++.
T Consensus 140 -~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 140 -ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 557778899999999999999987655544333334556899999999999999999999999998864
No 96
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.99 E-value=2.4e-06 Score=93.23 Aligned_cols=422 Identities=10% Similarity=0.005 Sum_probs=241.9
Q ss_pred ccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccc---c---Cc----------hh
Q 010290 21 DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYV---G---GL----------EY 83 (513)
Q Consensus 21 ~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~---~---~~----------~~ 83 (513)
.++.+|......+..+++...| ..|+++++.+.+ +.. ++..+..+...|..+..-+ . .. ..
T Consensus 108 ~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~ 185 (1204)
T 3a6p_A 108 EENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQN 185 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH
Confidence 4678999999999999988766 458889998888 433 4555666666666554311 0 00 01
Q ss_pred hhhhhHHHHHhhcc-------------------chhHHHHHHHHHHHHHHhhcChHHHHh---hHHHHHHHhhcCCCcch
Q 010290 84 ANVLLPPLETLCTV-------------------EETCVRDKAVESLCRIGSQMREQDVVE---HFIPLVKRLAAGEWFTA 141 (513)
Q Consensus 84 ~~~l~~~l~~l~~~-------------------~~~~vR~~a~~~l~~l~~~~~~~~~~~---~~~~~l~~l~~d~~~~~ 141 (513)
...+++.+...+.+ ++..++..+++++......++...+.+ .+++.+..+..+ +..
T Consensus 186 ~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~l 263 (1204)
T 3a6p_A 186 MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QEL 263 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHH
Confidence 22444444444332 234567777787777666666544433 377777776654 678
Q ss_pred hhhHHhhhHhhcCCCC-HHHH--------HHHHHHHHHHc--------CCCchHHHHHHHHhHHHHHHHhhh--------
Q 010290 142 RVSSCGLFHVAYPSAP-EALK--------TELRTIYRQLC--------QDDMPMVRRSAATNLGKFAATVEA-------- 196 (513)
Q Consensus 142 R~~~~~~l~~~~~~~~-~~~~--------~~l~~~l~~l~--------~d~~~~vr~~a~~~l~~l~~~~~~-------- 196 (513)
|..|+.++..++..-. ++.. ...+..+.... .+.+..+++..++.+..++..+-.
T Consensus 264 r~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~ 343 (1204)
T 3a6p_A 264 QLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDV 343 (1204)
T ss_dssp HHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999998876442 2211 11122223322 233567788888877776643221
Q ss_pred --hhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCC--hh----hhhhhHHHHHHH---hc---CCCC--------
Q 010290 197 --AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE--PQ----DCVAHILPVIVN---FS---QDKS-------- 254 (513)
Q Consensus 197 --~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~~----~~~~~l~~~l~~---~~---~d~~-------- 254 (513)
......+++.+..+..+++..+-..++..+..+.+... .. .+...+++.+.. -. .+.+
T Consensus 344 ~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~ 423 (1204)
T 3a6p_A 344 ETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSR 423 (1204)
T ss_dssp CCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHH
T ss_pred cChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhh
Confidence 22345788999999999988888888888887776532 21 233344555411 11 1100
Q ss_pred -------------HHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC-------------------------CcHHH
Q 010290 255 -------------WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD-------------------------NEAEV 296 (513)
Q Consensus 255 -------------~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d-------------------------~~~~v 296 (513)
+..|+.....+..++...+... ...+.+.+...+.+ +....
T Consensus 424 ~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~-l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 502 (1204)
T 3a6p_A 424 FDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTS-FQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQ 502 (1204)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHTCC-----------------CCSCSSSHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHH
Confidence 2456666666666665432211 22333444333222 11223
Q ss_pred HHHHHHhHHHHHhhh---C-hH----HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHH-HHHHhHHHHHHHhc
Q 010290 297 RIAAAGKVTKICRIL---N-PE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD-ATIEQLLPIFLSLL 367 (513)
Q Consensus 297 r~~a~~~l~~~~~~~---~-~~----~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l 367 (513)
..+....+..+.+.+ . .+ .+...+++.+..+ +..++.+|...+.+++.+...+... .+...++..++..+
T Consensus 503 ~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~-~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l 581 (1204)
T 3a6p_A 503 WEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNF-DTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSV 581 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHC-CCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhh
Confidence 344444455444433 1 11 1223344433322 3457889999999999888766532 22344555555555
Q ss_pred CC------------CChHHHHHHHHHHHHhhhhhhhhh--hhhhHHHHHHHhhcCC---ChhHHHHHHHHHHHHHHHhCh
Q 010290 368 KD------------EFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDR---HWRVRLAIIEYIPLLASQLGV 430 (513)
Q Consensus 368 ~d------------~~~~vr~~a~~~l~~i~~~~~~~~--~~~~l~~~l~~l~~~~---~~~vR~~~~~~l~~l~~~~~~ 430 (513)
.+ ....||.+|+.++..+++..+... +.+.+...+..++... +..-+....+++..++..+++
T Consensus 582 ~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~ 661 (1204)
T 3a6p_A 582 TFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKN 661 (1204)
T ss_dssp HCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCC
T ss_pred ccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCC
Confidence 44 234799999999999998776432 2355666666655533 356677777888777655444
Q ss_pred hh----HHHHHHHHHHHHhcCc
Q 010290 431 GF----FDDKLGALCMQWLKDK 448 (513)
Q Consensus 431 ~~----~~~~~~~~l~~~l~d~ 448 (513)
.. +.+.+++.+..-..++
T Consensus 662 ~~~~~~~l~~ll~P~~~~w~~~ 683 (1204)
T 3a6p_A 662 YERQKVFLEELMAPVASIWLSQ 683 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHccH
Confidence 32 2344566666555543
No 97
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.98 E-value=3.2e-08 Score=89.69 Aligned_cols=183 Identities=13% Similarity=0.171 Sum_probs=139.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc-------ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH----
Q 010290 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-------RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---- 314 (513)
Q Consensus 246 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~-------~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---- 314 (513)
+.+.+.+.+|..|..+++.+..+......... ...+.+.+...+.|++..|...++.++..++..++..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 55788899999999999988887764332111 2346678888999999999999999999998866532
Q ss_pred ----HHHHhhhhhhhh-hcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhh
Q 010290 315 ----LAIQHILPCVKE-LSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (513)
Q Consensus 315 ----~~~~~l~~~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~ 389 (513)
.....++|.+.. .+.|....+|..+..++..++...+. ...+++.+...++..++.+|..++..|..+...+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 234566776654 47899999999999998887755442 2335677788899999999999999999999887
Q ss_pred hhhh-----hhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChh
Q 010290 390 GIDL-----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431 (513)
Q Consensus 390 ~~~~-----~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~ 431 (513)
|... ..+.+++.+..++.|.+..||.+|..++..+...+|..
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 7543 22456777888899999999999999999999988864
No 98
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.98 E-value=8e-09 Score=87.04 Aligned_cols=139 Identities=21% Similarity=0.240 Sum_probs=113.7
Q ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhCCCccc
Q 010290 200 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTR 278 (513)
Q Consensus 200 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 278 (513)
.+.++++...+.+++.++||..|+..++.. . ....+++.+.. +..|++|.||..++.+++.++...+.+
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 567889999999999999999999988877 2 12568999998 888999999999999999999744433
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchh
Q 010290 279 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI 349 (513)
Q Consensus 279 ~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 349 (513)
..++.+....+|+++.||+.|+..+..++.........+.++|.+..+..|++..||.++...|..+++.
T Consensus 139 -~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 139 -KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 4778889999999999999999876544432222233466789999999999999999999999999875
No 99
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.97 E-value=1.3e-10 Score=92.26 Aligned_cols=119 Identities=16% Similarity=0.128 Sum_probs=73.3
Q ss_pred hhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhH
Q 010290 319 HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (513)
Q Consensus 319 ~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l 398 (513)
.-.+.+...++|+++.+|..++..++.+... . .+.+.+.++|+++.||..++.+|+.+.. +..
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--------~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a 74 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGDE--------A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERA 74 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSST--------T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHH
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCch--------H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHH
Confidence 3345555666777777777777666555321 1 3666677777777777777777776643 334
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 010290 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKR 462 (513)
Q Consensus 399 ~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~ 462 (513)
++.+...++|+++.||..++++++.+.. ...+|.+..+++|+++.||..|+.+|+.
T Consensus 75 ~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 75 VEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 5666666677777777777777766531 2356777777777777777777777654
No 100
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.95 E-value=1.2e-10 Score=92.39 Aligned_cols=121 Identities=21% Similarity=0.218 Sum_probs=79.6
Q ss_pred ccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHH
Q 010290 278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE 357 (513)
Q Consensus 278 ~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 357 (513)
.+...+.+..+++|+++.+|..|+.+|+.+.. . . ++.+...++|+++.||..++.+++.+.. .
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----~----~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~ 72 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD----E----A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------E 72 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS----T----T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------H
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----h----H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------H
Confidence 34566777778888888888888877776532 1 1 2666667778888888888888777652 2
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHH
Q 010290 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423 (513)
Q Consensus 358 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~ 423 (513)
..++.+...++|+++.||..++.+|+.+.. +..++.+..+++|+++.+|..++.+++.
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 346677777788888888888888887653 4466777777788888888888877753
No 101
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.94 E-value=4.6e-07 Score=75.53 Aligned_cols=183 Identities=13% Similarity=0.111 Sum_probs=152.0
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh---hhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCh-hh
Q 010290 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-QD 237 (513)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~ 237 (513)
++.+..+..++.|.++.++..+...++.+.+..+. ......++|-+.+++.++++.|.-.|++++..+....+- +.
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 34678888899999999999999999999987532 345667889999999999999999999999999987653 23
Q ss_pred hhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHH
Q 010290 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAI 317 (513)
Q Consensus 238 ~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 317 (513)
....+...+.....+++...+..+++.++.+ ..-.....+...+..++.+.+..++.+++.++-.+...-+.....
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl----kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~ 187 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL----QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL 187 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC----CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC----CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH
Confidence 3566888899999999999999999999998 212224678899999999999999999999999998766655556
Q ss_pred HhhhhhhhhhcCCCcHHHHHHHHHHHHHhch
Q 010290 318 QHILPCVKELSSDSSQHVRSALATVIMGMAP 348 (513)
Q Consensus 318 ~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 348 (513)
+.++.-+..++++.++.++.-++..+..+..
T Consensus 188 ~~I~~eI~elL~~eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 188 TLILDEIPSLLQNDNEFIVELALDVLEKALS 218 (265)
T ss_dssp GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 7788888889999999999999999888764
No 102
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.93 E-value=1.5e-07 Score=78.38 Aligned_cols=182 Identities=12% Similarity=0.023 Sum_probs=146.9
Q ss_pred hhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHH---HHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCC--HHH
Q 010290 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQD---VVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAP--EAL 160 (513)
Q Consensus 86 ~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~--~~~ 160 (513)
..+..+..++.++++.++..++.++..+.+..+... ..+.++|-+.++..+++..+-..|.+++..+.+..+ ++.
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 456677788899999999999999999999875532 234467888888888888888889999998887654 447
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhh
Q 010290 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 240 (513)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 240 (513)
...+...+.....+++...+..+++.++.+ +. -.....++.++.+++...+..++.+|+.++.+++...++.....
T Consensus 113 y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv---~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~ 188 (265)
T 3b2a_A 113 FLKAAKTLVSLLESPDDMMRIETIDVLSKL-QP---LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLT 188 (265)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CB---SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGG
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cc---ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHH
Confidence 778888899999999999999999999888 22 23355677788888888888999999999999998887766777
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 010290 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (513)
Q Consensus 241 ~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 271 (513)
.++.-+..+++++++.++.-++..+..+...
T Consensus 189 ~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 189 LILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 7888888888888999999888888887643
No 103
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.55 E-value=2.2e-06 Score=90.16 Aligned_cols=405 Identities=13% Similarity=0.075 Sum_probs=229.2
Q ss_pred Hhhhhhhhhhhhh-ccCCchHHHHHHHHHhhcccccccC------chhhhhhhHHHHHhhc-cchhHHHHHHHHHHHHHH
Q 010290 43 ERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG------LEYANVLLPPLETLCT-VEETCVRDKAVESLCRIG 114 (513)
Q Consensus 43 ~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~------~~~~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~ 114 (513)
....+.+.|.+.. +.+++..-.+.+++.++-+...... +..+..+.|++...+. +-.++....+..++..+.
T Consensus 503 ~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~ 582 (997)
T 1vsy_5 503 ELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLP 582 (997)
T ss_dssp CCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 3456777788777 6777888899999999877764332 3578889999988877 577778888888888888
Q ss_pred hhcChHHHHhhHHHHHHHhh--c------CCC---cchhhhHHhh-hHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHH
Q 010290 115 SQMREQDVVEHFIPLVKRLA--A------GEW---FTARVSSCGL-FHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRS 182 (513)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~l~--~------d~~---~~~R~~~~~~-l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~ 182 (513)
...++.-. -|++.-+. . .++ ...|...... +..+.=.++. ...++..+. ++++...||+.
T Consensus 583 ~~~DprR~----~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~--~~~~l~~~~--l~h~y~~VRe~ 654 (997)
T 1vsy_5 583 AVVDLRRS----KTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD--VGKLFDELV--FDHPYDQVRQA 654 (997)
T ss_dssp HHSCGGGC----HHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC--CHHHHHHCC--SCCSCHHHHHH
T ss_pred cCCChhhh----HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc--HHHHHHHHH--hCCChHHHHHH
Confidence 87665322 23444331 1 111 1223333332 2222223332 244555555 78899999999
Q ss_pred HHHhHHHHHHHhhhhhh--HHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHH---HHHhcC---C--
Q 010290 183 AATNLGKFAATVEAAHL--KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPV---IVNFSQ---D-- 252 (513)
Q Consensus 183 a~~~l~~l~~~~~~~~~--~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~---l~~~~~---d-- 252 (513)
+...|..+....-.+.+ .+.++. ...+.+.. ++ +-...++......+... +..... +
T Consensus 655 Ig~~L~~i~~~~~~~~~~~~~~~l~----~~~~~~~~--------~~-~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~ 721 (997)
T 1vsy_5 655 VAKLLTTLVQNQSNPSISDPTTLLE----AERNDPDG--------LG-LPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLN 721 (997)
T ss_dssp HHHHHHHHHHTSCCCCBSCHHHHHH----HHHSCSSS--------SC-CCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCC
T ss_pred HHHHHHHHHHhhcccCCCCHHHHHH----hhcccccc--------cc-CccccCcchHHHHHHHHHHHHHHhhhcccccC
Confidence 99999887764310000 011111 11111000 00 00000011111111111 111111 1
Q ss_pred CCHHH---HHHHHHHHH-HHHHHhCCCc------cccc-hHHHHHHhcCCCcH-HHHHH-HHHhHHHHHhhhChHHHHHh
Q 010290 253 KSWRV---RYMVANQLY-ELCEAVGPEP------TRSD-VVPAYVRLLRDNEA-EVRIA-AAGKVTKICRILNPELAIQH 319 (513)
Q Consensus 253 ~~~~v---r~~~~~~l~-~l~~~~~~~~------~~~~-ll~~l~~~l~d~~~-~vr~~-a~~~l~~~~~~~~~~~~~~~ 319 (513)
+.... .....+++- -+...++... +... ++|.++.+.++.+. ++... |...+..+....-+....+.
T Consensus 722 ~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~ 801 (997)
T 1vsy_5 722 PQQFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAA 801 (997)
T ss_dssp STTTTTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHH
Confidence 10000 111112222 1222222210 1122 66767666666654 55554 44555555544434444566
Q ss_pred hhhhhhhhcC-CCcHHHHHHHHHHHHHhch----hhCHHHHHHhHHHHHHHhcCCCC-hHHHHHHHHHHHHhhhhh-hhh
Q 010290 320 ILPCVKELSS-DSSQHVRSALATVIMGMAP----ILGKDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVI-GID 392 (513)
Q Consensus 320 l~~~l~~~~~-d~~~~vr~~~~~~l~~l~~----~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~i~~~~-~~~ 392 (513)
++..+..... +++| +|.+++..+..+.- .++.+ ....++..+..+|.|+. .+||..|+.+|..++... ...
T Consensus 802 ~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~-~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~ 879 (997)
T 1vsy_5 802 IVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEE-EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQ 879 (997)
T ss_dssp HHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTT-HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHH
T ss_pred HHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchh
Confidence 6777766665 6899 99999988766542 11222 23578889999999999 999999999999997654 212
Q ss_pred hhhhhHHHHHHHhhcC------------CChhHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhcCchhHHHHHH
Q 010290 393 LLSQSLLPAIVELAED------------RHWRVRLAIIEYIPLLASQLGVG----FFDDKLGALCMQWLKDKVYSIRDAA 456 (513)
Q Consensus 393 ~~~~~l~~~l~~l~~~------------~~~~vR~~~~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~VR~~a 456 (513)
.. ..++..+...+.. .+-..|.+++-.+++++..++-. .+.+.++..+-...+|+.+ |+..+
T Consensus 880 ~~-~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tv 957 (997)
T 1vsy_5 880 PL-LSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAA 957 (997)
T ss_dssp HH-HHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHT
T ss_pred hH-HHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHH
Confidence 22 2333333333211 12257889999999998875433 3555566666667788666 99999
Q ss_pred HHHHHHHHHHhChhhH
Q 010290 457 ANNVKRLAEEFGPDWA 472 (513)
Q Consensus 457 ~~~l~~l~~~~~~~~~ 472 (513)
-++++.+.+.....|.
T Consensus 958 k~tlseFkrTH~D~W~ 973 (997)
T 1vsy_5 958 KNTISEFKKVRADTWK 973 (997)
T ss_dssp HHHHHHHHHHTSTTHH
T ss_pred HHHHHHHHhccchhHH
Confidence 9999999998887775
No 104
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.39 E-value=0.0022 Score=62.90 Aligned_cols=290 Identities=11% Similarity=0.044 Sum_probs=164.7
Q ss_pred CchHHHHHHHHHhhcccccccCchhhhhhhHHHHHhhcc-chhHHHHHHHHHHHHHHhhcChH-----------------
Q 010290 59 DDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTV-EETCVRDKAVESLCRIGSQMREQ----------------- 120 (513)
Q Consensus 59 ~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~~vR~~a~~~l~~l~~~~~~~----------------- 120 (513)
.-.+-|+.|...|..+++......-...+-+++..+-+| ++.++-+.++++|..+...-+.+
T Consensus 34 tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~ 113 (651)
T 3grl_A 34 TLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQF 113 (651)
T ss_dssp CSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHH
Confidence 445667777777777776433222222233333444444 34444555666665544322110
Q ss_pred --HH--HhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHH------HHHHHHHHcCCCchHHHHHHHHhHHHH
Q 010290 121 --DV--VEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTE------LRTIYRQLCQDDMPMVRRSAATNLGKF 190 (513)
Q Consensus 121 --~~--~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~------l~~~l~~l~~d~~~~vr~~a~~~l~~l 190 (513)
.+ ...-++.+..+.+.+++.+|..+.+++..++..-+...++- -++.+..+++|+...+|..+...|..+
T Consensus 114 ~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~L 193 (651)
T 3grl_A 114 TEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQAL 193 (651)
T ss_dssp HHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 00 12246777888889999999999999999998877754433 468889999999999999999999998
Q ss_pred HHHhhh---hhhHHHHHHHHHHhhhccch----hHHHHHHHHHHHhhccCC-hhhhh--hhHHHHHHHhcC----CCCHH
Q 010290 191 AATVEA---AHLKSEIMSIFEELTQDDQD----SVRLLAVEGCGALGKLLE-PQDCV--AHILPVIVNFSQ----DKSWR 256 (513)
Q Consensus 191 ~~~~~~---~~~~~~l~~~l~~l~~d~~~----~vr~~a~~~l~~l~~~~~-~~~~~--~~l~~~l~~~~~----d~~~~ 256 (513)
++.-.. -...+..++.+..++..+.. .|-.-++..+..+...-+ .+.+. ...+|.+..+++ +..|.
T Consensus 194 t~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~ 273 (651)
T 3grl_A 194 TRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWS 273 (651)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCC
T ss_pred hcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccH
Confidence 864322 11222345555556655443 455556666777776522 11111 113444444443 22343
Q ss_pred HHH--HHHHHHHHHHHHhCCCc------------cccchHHHHHHhcCCC--cHHHHHHHHHhHHHHHhhhCh--HHHHH
Q 010290 257 VRY--MVANQLYELCEAVGPEP------------TRSDVVPAYVRLLRDN--EAEVRIAAAGKVTKICRILNP--ELAIQ 318 (513)
Q Consensus 257 vr~--~~~~~l~~l~~~~~~~~------------~~~~ll~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~--~~~~~ 318 (513)
-++ .+...+..+.-.+.... ....+++.+.+++..+ ...+|..|+.+++.++..-.. +.+.+
T Consensus 274 ~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~ 353 (651)
T 3grl_A 274 AQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFAS 353 (651)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhh
Confidence 221 11112222222222211 1234677777776544 578999999999998764211 11211
Q ss_pred ----------hhhhhhhhhcCC-CcHHHHHHHHHHHHHhch
Q 010290 319 ----------HILPCVKELSSD-SSQHVRSALATVIMGMAP 348 (513)
Q Consensus 319 ----------~l~~~l~~~~~d-~~~~vr~~~~~~l~~l~~ 348 (513)
.++..+..+..+ ....+|.+++.++..+..
T Consensus 354 ~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 354 VNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp CEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence 122223333443 457899999999988763
No 105
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.26 E-value=3.3e-05 Score=81.38 Aligned_cols=326 Identities=11% Similarity=0.040 Sum_probs=176.9
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhh------hhhhHHHHHHHHHHhhh-ccchhHHHHHHHHH
Q 010290 154 PSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE------AAHLKSEIMSIFEELTQ-DDQDSVRLLAVEGC 226 (513)
Q Consensus 154 ~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~l~~~l~~l~~-d~~~~vr~~a~~~l 226 (513)
.++++...+.+.+.+..++.|.+..-.+.+++.++.+..... .+..++.+.|.+.+.+. +-.++....=..++
T Consensus 499 rn~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i 578 (997)
T 1vsy_5 499 SGFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLA 578 (997)
T ss_dssp TTTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 566777778888889999999888888899999988865321 14567789999999888 45555544444444
Q ss_pred HHhhccCChhhhhhhHHHHHHHh----c-CCCCHHHHHHHHHHHHHHHHHhCCCcc-ccchHHHHHHhcCCCcHHHHHHH
Q 010290 227 GALGKLLEPQDCVAHILPVIVNF----S-QDKSWRVRYMVANQLYELCEAVGPEPT-RSDVVPAYVRLLRDNEAEVRIAA 300 (513)
Q Consensus 227 ~~l~~~~~~~~~~~~l~~~l~~~----~-~d~~~~vr~~~~~~l~~l~~~~~~~~~-~~~ll~~l~~~l~d~~~~vr~~a 300 (513)
.-+....++.. ...++..+... . +..+.-....-+..|..+....+-... .+.++..++ +.++...||++.
T Consensus 579 ~~~~~~~DprR-~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~I 655 (997)
T 1vsy_5 579 WWLPAVVDLRR-SKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAV 655 (997)
T ss_dssp HHHHHHSCGGG-CHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHH
T ss_pred HHHhcCCChhh-hHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHH
Confidence 43333333321 22344444221 0 111110111112223333322222111 234444444 677778888888
Q ss_pred HHhHHHHHhhhC----------------------------hHHHHH---hhhhhhhhhcC---C--C-----cH--HHHH
Q 010290 301 AGKVTKICRILN----------------------------PELAIQ---HILPCVKELSS---D--S-----SQ--HVRS 337 (513)
Q Consensus 301 ~~~l~~~~~~~~----------------------------~~~~~~---~l~~~l~~~~~---d--~-----~~--~vr~ 337 (513)
...|..+....- ++.+.+ .++..+..... + + +. ..-.
T Consensus 656 g~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~k 735 (997)
T 1vsy_5 656 AKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTS 735 (997)
T ss_dssp HHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHH
T ss_pred HHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHH
Confidence 888877665431 011111 11111111100 1 1 11 2223
Q ss_pred HHHHHHHHhchhhCHHHHH----HhHHHHHHHhcCCCCh-HHHHH-HHHHHHHhhhhhhhhhhhhhHHHHHHHhhc-CCC
Q 010290 338 ALATVIMGMAPILGKDATI----EQLLPIFLSLLKDEFP-DVRLN-IISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRH 410 (513)
Q Consensus 338 ~~~~~l~~l~~~~~~~~~~----~~l~~~l~~~l~d~~~-~vr~~-a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~-~~~ 410 (513)
+++..+...........+. +.++|.++.+.++++. ++... +..++..+....-.....+.++..+.+... +++
T Consensus 736 Tvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~s 815 (997)
T 1vsy_5 736 TIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSS 815 (997)
T ss_dssp HHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCS
T ss_pred HHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCc
Confidence 4454444443322111111 2256666666665543 44444 444555554332222223455556655555 679
Q ss_pred hhHHHHHHHHHHHHHHH----hChhhHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhh
Q 010290 411 WRVRLAIIEYIPLLASQ----LGVGFFDDKLGALCMQWLKDKV-YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIK 484 (513)
Q Consensus 411 ~~vR~~~~~~l~~l~~~----~~~~~~~~~~~~~l~~~l~d~~-~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~ 484 (513)
| .|.+++..+..+.-. ++.+. ...+...+..+|.|+. .+||+.|+.+|+.+....+.....+.++..+.+..
T Consensus 816 W-~R~~~L~~lq~~~f~n~f~l~~~~-~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~ 892 (997)
T 1vsy_5 816 N-QTKLQLAFIQHFLSAELLQLTEEE-KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGL 892 (997)
T ss_dssp S-SHHHHHHHHHHHHHHHTTTSCTTH-HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSS
T ss_pred H-HHHHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 9 999999998766543 23332 2468899999999999 99999999999999877524223334555555433
No 106
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=98.14 E-value=0.00085 Score=62.75 Aligned_cols=87 Identities=18% Similarity=0.207 Sum_probs=42.4
Q ss_pred cchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhH
Q 010290 139 FTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSV 218 (513)
Q Consensus 139 ~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~v 218 (513)
...+..|++.++..++.+++- ..+.++.+..+|+|.+..||..|.+.|..+|+. ...+.+.++|.++++.+++..
T Consensus 42 ~k~K~LaaQ~I~kffk~FP~l-~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~~E 116 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFPEL-ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDSAE 116 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCGGG-HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHhhChhh-HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccchHH
Confidence 444555555555555555432 344555555555555555555555555555543 234445555555555444433
Q ss_pred HHHHHHHHHHhh
Q 010290 219 RLLAVEGCGALG 230 (513)
Q Consensus 219 r~~a~~~l~~l~ 230 (513)
+...-.+|..+.
T Consensus 117 ~~~V~~sL~sll 128 (507)
T 3u0r_A 117 FNLVNNALLSIF 128 (507)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333443333
No 107
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.13 E-value=0.0022 Score=65.64 Aligned_cols=89 Identities=12% Similarity=0.099 Sum_probs=60.5
Q ss_pred hhhhhhhhhhccCCchHHHHHHHHHhhcccccccCchh-hhh--hhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHH
Q 010290 46 RKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEY-ANV--LLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDV 122 (513)
Q Consensus 46 ~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~-~~~--l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~ 122 (513)
...++|.+..+.++++..|..|+.++..++........ ... +.+++..++.|++..||..|+.+|..++..-+.+..
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 45778887778888888999999998888752111111 111 235567788888889999999998888887666433
Q ss_pred Hh----hHHHHHHHhh
Q 010290 123 VE----HFIPLVKRLA 134 (513)
Q Consensus 123 ~~----~~~~~l~~l~ 134 (513)
.. .+++.+..+.
T Consensus 113 ~~l~~~~il~~L~~~l 128 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAA 128 (684)
T ss_dssp HHHHHTTHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHH
Confidence 22 2666665554
No 108
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=98.10 E-value=0.0015 Score=61.05 Aligned_cols=258 Identities=14% Similarity=0.111 Sum_probs=138.1
Q ss_pred hhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchH
Q 010290 99 ETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPM 178 (513)
Q Consensus 99 ~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~ 178 (513)
+...+..|...+.++.+.++. ..+.-+..+..+++|++..+|..|...+..+++. +....+...+.++++..++.
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~--l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~kiaDvL~QlLqtdd~~ 115 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPE--LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPRVADILTQLLQTDDSA 115 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGG--GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHHHHHHHHHHTTCCCHH
T ss_pred CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhhHHHHHHHHHhccchH
Confidence 455666666666666666543 1223344555666777777777777777777665 45667777888888877777
Q ss_pred HHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCh----hhhhhhHHHHHHHhcCCCC
Q 010290 179 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAHILPVIVNFSQDKS 254 (513)
Q Consensus 179 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~ 254 (513)
-+..+-.+|..+.+.-+. ..+..++..+.+ +++.+|..++..|..-...++. .+....+...+.+.++|-+
T Consensus 116 E~~~V~~sL~sllk~Dpk----~tl~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT 190 (507)
T 3u0r_A 116 EFNLVNNALLSIFKMDAK----GTLGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVT 190 (507)
T ss_dssp HHHHHHHHHHHHHHHCHH----HHHHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHhcChH----HHHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhcccc
Confidence 777777777777764322 223333333333 3578888888877554443333 3344456667777776654
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc------CCCcHHHH----HHHHHhHHHHHhhhChH----HHHHhh
Q 010290 255 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL------RDNEAEVR----IAAAGKVTKICRILNPE----LAIQHI 320 (513)
Q Consensus 255 ~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l------~d~~~~vr----~~a~~~l~~~~~~~~~~----~~~~~l 320 (513)
..-=..++..|..+ ..++.....+++++.+..-. +-.+++.- .++-.++.-+....... .+.+.+
T Consensus 191 ~~EF~L~m~lL~~l-kl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kI 269 (507)
T 3u0r_A 191 GEEFVLFMKILSGL-KSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQV 269 (507)
T ss_dssp HHHHHHHHHHHHTS-GGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc-ccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhh
Confidence 32111222222111 11111111234555555432 11233322 23333333333333333 334566
Q ss_pred hhhhhhhcCC-CcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhc
Q 010290 321 LPCVKELSSD-SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 367 (513)
Q Consensus 321 ~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 367 (513)
+|.+..+-.. +....+...+..+..++...|........++.+.+.|
T Consensus 270 lP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L 317 (507)
T 3u0r_A 270 LPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKL 317 (507)
T ss_dssp GGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHH
T ss_pred ccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHH
Confidence 6766544332 2223677888999999988883333344455555444
No 109
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.07 E-value=0.0034 Score=61.63 Aligned_cols=324 Identities=15% Similarity=0.122 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHcCCC-chHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhh-hc-cchhHHHHHHHHHHHhhccCChh
Q 010290 160 LKTELRTIYRQLCQDD-MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELT-QD-DQDSVRLLAVEGCGALGKLLEPQ 236 (513)
Q Consensus 160 ~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~-~d-~~~~vr~~a~~~l~~l~~~~~~~ 236 (513)
...+-++.+...+++. -.+=|++|+..|..+++.+..+ +...-+|.+...+ +| ++.++-..++++|..+...-+.+
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~-Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLE-VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTH-HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHH-hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 4566677777666544 5778888888888888766543 3344445444444 44 34455566677765544322211
Q ss_pred hhhhhHHHHHHHhcCCCCHHHHH-HHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHH
Q 010290 237 DCVAHILPVIVNFSQDKSWRVRY-MVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL 315 (513)
Q Consensus 237 ~~~~~l~~~l~~~~~d~~~~vr~-~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 315 (513)
.. .. .++.... ...+.-..+.. .++-++.++.++++.+..+|..+++.|..++..-+. .
T Consensus 97 ~~-~~-----------~~~~~~~~~~~~~~d~f~~-------~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~-~ 156 (651)
T 3grl_A 97 EV-EE-----------NSTRQSEDLGSQFTEIFIK-------QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGP-Q 156 (651)
T ss_dssp -----------------------CHHHHHHHHHHH-------STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHH-H
T ss_pred cc-cc-----------cccccchHHHHHHHHHHHc-------CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcH-H
Confidence 10 00 0000000 01111111111 356789999999999999999999999999976332 2
Q ss_pred HHH------hhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHH---HHHHhHHHHHHHhcCCCCh----HHHHHHHHHH
Q 010290 316 AIQ------HILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFP----DVRLNIISKL 382 (513)
Q Consensus 316 ~~~------~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~----~vr~~a~~~l 382 (513)
..+ .-+|.+..++.|+...+|..++..+..+++.-..- ...+..++.+++.+.++.. .|-.-++..+
T Consensus 157 ~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll 236 (651)
T 3grl_A 157 VQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILL 236 (651)
T ss_dssp HHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHH
Confidence 222 34578889999999999999999999998643221 1123567778887776543 6667777777
Q ss_pred HHhhhhhh-hhh-hh-hhHHHHHHHhhcCC----ChhHHH-----HHHHHHHHHHHHhCh---------hhHHHHHHHHH
Q 010290 383 DQVNQVIG-IDL-LS-QSLLPAIVELAEDR----HWRVRL-----AIIEYIPLLASQLGV---------GFFDDKLGALC 441 (513)
Q Consensus 383 ~~i~~~~~-~~~-~~-~~l~~~l~~l~~~~----~~~vR~-----~~~~~l~~l~~~~~~---------~~~~~~~~~~l 441 (513)
..+...-. .+. +. ...+|.+..+++.+ .|.-+. .++.++..+...-++ ..+...+++.+
T Consensus 237 ~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~L 316 (651)
T 3grl_A 237 QNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQL 316 (651)
T ss_dssp HHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHH
Confidence 77765421 111 11 24455555555422 354221 233334333332121 11223467788
Q ss_pred HHHhcCc--hhHHHHHHHHHHHHHHHHhCh--hhHh----------hhhHHHHHhhhcCc-chHHH-HHHHHHHHhccc
Q 010290 442 MQWLKDK--VYSIRDAAANNVKRLAEEFGP--DWAM----------QHIVPQVALIKSSR-NLVLN-SVLSLLKNAGID 504 (513)
Q Consensus 442 ~~~l~d~--~~~VR~~a~~~l~~l~~~~~~--~~~~----------~~i~~~L~~~~~~~-~~~~r-~~~~~~~~i~~~ 504 (513)
++++..+ ...||..|+.+++.+.+.... +.+. ..++..|..+.++. .+-.| .++.+++++..+
T Consensus 317 l~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~ 395 (651)
T 3grl_A 317 CTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK 395 (651)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC
Confidence 8876544 467999999999998763221 1111 12333344445443 46677 555777766543
No 110
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.93 E-value=0.00034 Score=60.38 Aligned_cols=182 Identities=12% Similarity=0.061 Sum_probs=109.9
Q ss_pred hhhhhhhcCCCcH--HHHHHHHHHHHHhchhhCH---HHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhh-hh--h
Q 010290 321 LPCVKELSSDSSQ--HVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GI--D 392 (513)
Q Consensus 321 ~~~l~~~~~d~~~--~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~-~~--~ 392 (513)
+|.+..++.++++ .++..++..+..++..-.. .......+|.+.++|+++++.++..|+.+|..+...- .. .
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3555555555554 6666666666665532211 1112345788888888888899999999988886521 11 1
Q ss_pred hhhhhHHHHHHHhhc-CCChhHHHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHhc-------C---------chhHHHH
Q 010290 393 LLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLK-------D---------KVYSIRD 454 (513)
Q Consensus 393 ~~~~~l~~~l~~l~~-~~~~~vR~~~~~~l~~l~~~~~-~~~~~~~~~~~l~~~l~-------d---------~~~~VR~ 454 (513)
......+|.|..++. ++++.++..++.++-.++..-. ...+.+.-+|.+..++. + .+..|+.
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~ 169 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFY 169 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHH
Confidence 123467888888887 4688899988888888865322 22223345666655432 1 2568999
Q ss_pred HHHHHHHHHHHHh--ChhhHh--hhhHHHHHhhhcCc-------chHHHHHHHHHHHhc
Q 010290 455 AAANNVKRLAEEF--GPDWAM--QHIVPQVALIKSSR-------NLVLNSVLSLLKNAG 502 (513)
Q Consensus 455 ~a~~~l~~l~~~~--~~~~~~--~~i~~~L~~~~~~~-------~~~~r~~~~~~~~i~ 502 (513)
.|..+|..+...- +..... .-+++.|..+++.. +-.....+-++.+++
T Consensus 170 na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 170 NVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence 9999999887531 111111 34667776665431 234446666666654
No 111
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.77 E-value=0.001 Score=57.37 Aligned_cols=185 Identities=8% Similarity=-0.040 Sum_probs=116.1
Q ss_pred hhhHHHHHhhccchh--HHHHHHHHHHHHHHhhcCh--HH-HHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH-
Q 010290 86 VLLPPLETLCTVEET--CVRDKAVESLCRIGSQMRE--QD-VVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA- 159 (513)
Q Consensus 86 ~l~~~l~~l~~~~~~--~vR~~a~~~l~~l~~~~~~--~~-~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~- 159 (513)
..+|.+.+++..+++ .++..|+.++..++..-++ .. .....+|.+..+..+++..++..|+..+..+...-++.
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 345666666666666 7777788888877754322 22 23346788888888888888888888888887643222
Q ss_pred ---HHHHHHHHHHHHcC-CCchHHHHHHHHhHHHHHHHhh-hhhhHHHHHHHHHHhhh-------c---------cchhH
Q 010290 160 ---LKTELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVE-AAHLKSEIMSIFEELTQ-------D---------DQDSV 218 (513)
Q Consensus 160 ---~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~l~~-------d---------~~~~v 218 (513)
.....++.+.+++. .+++.+++.++.+|-.++..-. +..+...-+|.|..++. + .+..+
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 23446888888887 5789999999988888875322 22333344566655431 1 24589
Q ss_pred HHHHHHHHHHhhccCC--hhhhh--hhHHHHHHHhc------CCCCHHHHHHHHHHHHHHHH
Q 010290 219 RLLAVEGCGALGKLLE--PQDCV--AHILPVIVNFS------QDKSWRVRYMVANQLYELCE 270 (513)
Q Consensus 219 r~~a~~~l~~l~~~~~--~~~~~--~~l~~~l~~~~------~d~~~~vr~~~~~~l~~l~~ 270 (513)
+..|..+|.+++..-. ...+. ..+++.+..++ .+.+.+.++.++.+|.+++.
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 9999999998875311 11111 12444444332 22345667777777777653
No 112
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=97.58 E-value=0.032 Score=48.56 Aligned_cols=129 Identities=15% Similarity=0.201 Sum_probs=79.5
Q ss_pred HHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHH
Q 010290 295 EVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDV 374 (513)
Q Consensus 295 ~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v 374 (513)
+.+...+.....++-.-.+. +.+.+++.+..+..|++..+|...+..+...+.. +.......++.+..+++|+++.|
T Consensus 30 ~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V 106 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQV 106 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHH
Confidence 35554544444443332232 4466666666676777777777777777666532 22334556677777777777777
Q ss_pred HHHHHHHHHHhhhhh--------h------hhh-hhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 010290 375 RLNIISKLDQVNQVI--------G------IDL-LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426 (513)
Q Consensus 375 r~~a~~~l~~i~~~~--------~------~~~-~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~ 426 (513)
...++.+...+.... + ..| ....+...+..+..+.+..+|..+++++..++-
T Consensus 107 ~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 107 IKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 777777666654321 1 011 123455666667778889999999999988774
No 113
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=97.46 E-value=0.064 Score=49.59 Aligned_cols=111 Identities=14% Similarity=0.077 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccC------
Q 010290 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL------ 233 (513)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~------ 233 (513)
..+++++.++++..|++..||+.++..+.+.+.. .......+++.|..++.|+++.|-+.++.+.+.+....
T Consensus 60 Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~ 137 (386)
T 3o2t_A 60 LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVK 137 (386)
T ss_dssp GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666667777777777777777777766653 23345666677777777777777777776666554321
Q ss_pred -Ch-----hhhh---hhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 010290 234 -EP-----QDCV---AHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272 (513)
Q Consensus 234 -~~-----~~~~---~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 272 (513)
+. +..+ ..+-..+.....+.+..||..+++.+..+....
T Consensus 138 ~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~q 185 (386)
T 3o2t_A 138 SRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTL 185 (386)
T ss_dssp C-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHT
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHh
Confidence 00 1111 123334445566678888888888888876544
No 114
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=97.42 E-value=0.014 Score=62.58 Aligned_cols=170 Identities=10% Similarity=0.027 Sum_probs=99.8
Q ss_pred HHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHhCCC------ccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhh
Q 010290 242 ILPVIVNFSQD----KSWRVRYMVANQLYELCEAVGPE------PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 311 (513)
Q Consensus 242 l~~~l~~~~~d----~~~~vr~~~~~~l~~l~~~~~~~------~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 311 (513)
++..+..++.+ .++.+|.+++-+++.+....... ...+.+...+.+.+...+.+-+..++++||.+..
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-- 469 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-- 469 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--
Confidence 44444455543 46789999999999998754322 1123344455555566677778889999998864
Q ss_pred ChHHHHHhhhhhhhhh---cCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhc--CCCChHHHHHHHHHHHHhh
Q 010290 312 NPELAIQHILPCVKEL---SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL--KDEFPDVRLNIISKLDQVN 386 (513)
Q Consensus 312 ~~~~~~~~l~~~l~~~---~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~i~ 386 (513)
....+.+.+++... ..+...++|.+|+.++..++... ...+.+++.+.. .+.++++|.+|+..|-...
T Consensus 470 --p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-----p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~ 542 (1056)
T 1lsh_A 470 --PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-----PRKVQEIVLPIFLNVAIKSELRIRSCIVFFESK 542 (1056)
T ss_dssp --GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-----HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTC
T ss_pred --hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-----hHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHC
Confidence 22223444444321 12345689999999998887432 234556666666 4467899999988765432
Q ss_pred hhhhhhhhhhhHHHHHHH-hhcCCChhHHHHHHHHHHHHHHH
Q 010290 387 QVIGIDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQ 427 (513)
Q Consensus 387 ~~~~~~~~~~~l~~~l~~-l~~~~~~~vR~~~~~~l~~l~~~ 427 (513)
.. ...+..+.. +..+++..|+......+..++..
T Consensus 543 P~-------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 543 PS-------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp CC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred cC-------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 21 122222222 22345555655555555555443
No 115
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.33 E-value=0.0012 Score=67.50 Aligned_cols=66 Identities=12% Similarity=0.010 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcC---chhHHHHHHHHHHHHHHHHhChhh--Hh----hhhHHHHHhhhcCcchHHHHHHHHHHHh
Q 010290 436 KLGALCMQWLKD---KVYSIRDAAANNVKRLAEEFGPDW--AM----QHIVPQVALIKSSRNLVLNSVLSLLKNA 501 (513)
Q Consensus 436 ~~~~~l~~~l~d---~~~~VR~~a~~~l~~l~~~~~~~~--~~----~~i~~~L~~~~~~~~~~~r~~~~~~~~i 501 (513)
..+|.++.++.+ ...+|+..|+.+|..+.+...+-. +. ..+...+..+.++.....+.+...+.++
T Consensus 182 ~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni 256 (684)
T 4gmo_A 182 QTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNV 256 (684)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhH
Confidence 356666666533 235899999999998876432110 00 1344555555555555555444444444
No 116
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=97.08 E-value=0.022 Score=61.09 Aligned_cols=117 Identities=10% Similarity=0.036 Sum_probs=70.5
Q ss_pred CcHHHHHHHHHHHHHhchhhCH------HHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHH
Q 010290 331 SSQHVRSALATVIMGMAPILGK------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE 404 (513)
Q Consensus 331 ~~~~vr~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~ 404 (513)
.++.+|.+++-+++.++..... ......+...+.+.+...+..-+..++.+||++.. +..++.+..
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--------p~~l~~l~~ 478 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--------PNSIKKIQR 478 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------GGGHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--------hhHHHHHHH
Confidence 3566777777777666543211 11134455556666666677777888888887755 234444444
Q ss_pred hhc-------CCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHh--cCchhHHHHHHHHHH
Q 010290 405 LAE-------DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL--KDKVYSIRDAAANNV 460 (513)
Q Consensus 405 l~~-------~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l--~d~~~~VR~~a~~~l 460 (513)
++. +...++|.+|+.++..+... ..+.+-+.+++.. .+..++||.+|+..+
T Consensus 479 ~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~-----~p~~v~~il~~i~~n~~e~~EvRiaA~~~L 538 (1056)
T 1lsh_A 479 FLPGQGKSLDEYSTRVQAEAIMALRNIAKR-----DPRKVQEIVLPIFLNVAIKSELRIRSCIVF 538 (1056)
T ss_dssp TSTTSSSCCCCSCHHHHHHHHHTTTTGGGT-----CHHHHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred hhcCccccccccchHHHHHHHHHHHHhhhh-----chHHHHHHHHHHhcCCCCChHHHHHHHHHH
Confidence 442 22346788888888776532 1234566677766 445678888888775
No 117
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.82 E-value=0.22 Score=43.38 Aligned_cols=90 Identities=18% Similarity=0.179 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHH
Q 010290 217 SVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 296 (513)
Q Consensus 217 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~v 296 (513)
+.+...+.-...++-.-.+ .+.+.+++.+..+..|++..+|+-++..+...+.. +.......++.+..+++|+++.|
T Consensus 30 ~~kl~~L~qa~el~~~~dp-~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V 106 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCA-ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQV 106 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTG-GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHHHHHccCH-hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHH
Confidence 3555555555554433223 25677888888888888888888888888887743 22334567788888888888888
Q ss_pred HHHHHHhHHHHHh
Q 010290 297 RIAAAGKVTKICR 309 (513)
Q Consensus 297 r~~a~~~l~~~~~ 309 (513)
.+.++.+...+..
T Consensus 107 ~K~~I~~~~~iY~ 119 (257)
T 3gs3_A 107 IKRVIQACGSIYK 119 (257)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777654
No 118
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.56 E-value=0.47 Score=43.86 Aligned_cols=89 Identities=22% Similarity=0.281 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHH
Q 010290 218 VRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVR 297 (513)
Q Consensus 218 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr 297 (513)
.+...+.-...+.-.-.+ ...+.+++.+..+..|.+..+|+.++..+.+.+.. ........++.+..+++|.++.|.
T Consensus 41 ~Kl~~L~q~~EL~l~~dp-sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~ 117 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDP-TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVV 117 (386)
T ss_dssp HHHHHHHHHHHHHHTTCG-GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHHhccCH-HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 455555555554333222 35667888888888888888888888888887753 222235677778888888888888
Q ss_pred HHHHHhHHHHHh
Q 010290 298 IAAAGKVTKICR 309 (513)
Q Consensus 298 ~~a~~~l~~~~~ 309 (513)
+.++.+.+.+..
T Consensus 118 K~~I~~~tslYp 129 (386)
T 3o2t_A 118 KKAILTMTQLYK 129 (386)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887777653
No 119
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.43 E-value=0.48 Score=42.44 Aligned_cols=126 Identities=11% Similarity=0.086 Sum_probs=91.2
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhhhh---hhhhh---hhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHH-
Q 010290 362 IFLSLLKDEFPDVRLNIISKLDQVNQVI---GIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD- 434 (513)
Q Consensus 362 ~l~~~l~d~~~~vr~~a~~~l~~i~~~~---~~~~~---~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~- 434 (513)
.+++....+..+|-.-|..++..+...- -.+.+ .+.+......++.++||-.|..++..++.+.-.-....+.
T Consensus 168 ~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~ 247 (341)
T 1upk_A 168 DFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMT 247 (341)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHH
Confidence 4557788888888888888887775431 11211 1456677778999999999999999999997542222211
Q ss_pred -----HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh--------hHhhhhHHHHHhhhcCc
Q 010290 435 -----DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD--------WAMQHIVPQVALIKSSR 487 (513)
Q Consensus 435 -----~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--------~~~~~i~~~L~~~~~~~ 487 (513)
..-+..++.+|.|++.+|+..|...+.-+..+-... ...+.++..|.++..|+
T Consensus 248 ~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~ 313 (341)
T 1upk_A 248 KYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDR 313 (341)
T ss_dssp HHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred HHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 235788899999999999999999999877654332 11377888888888765
No 120
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.92 E-value=0.18 Score=41.53 Aligned_cols=73 Identities=10% Similarity=0.084 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHH--hChhhHHHHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHHHhChhh--HhhhhHHHHHhhhcCc
Q 010290 415 LAIIEYIPLLASQ--LGVGFFDDKLGALCMQWLKDK---VYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVALIKSSR 487 (513)
Q Consensus 415 ~~~~~~l~~l~~~--~~~~~~~~~~~~~l~~~l~d~---~~~VR~~a~~~l~~l~~~~~~~~--~~~~i~~~L~~~~~~~ 487 (513)
...++.+.++..+ +.-+.+..+++|.++.++-.+ ...+|..|++.++.+++.+|..+ ...++...+.+.+.|+
T Consensus 64 ~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp 143 (196)
T 4atg_A 64 KTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDP 143 (196)
T ss_dssp HHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCC
Confidence 3344444444433 222334455666666643110 01566666666666666665532 2355555555555444
No 121
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.15 E-value=0.94 Score=37.30 Aligned_cols=141 Identities=13% Similarity=0.101 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCC------ChHHHHHHHHHHHHhhhh--hhhhhhhhhHHHHHHHhh
Q 010290 335 VRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE------FPDVRLNIISKLDQVNQV--IGIDLLSQSLLPAIVELA 406 (513)
Q Consensus 335 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~------~~~vr~~a~~~l~~i~~~--~~~~~~~~~l~~~l~~l~ 406 (513)
.|.+++..+..=. | ...++|.+.+++.+. +..+-...+.....+..+ +.-+.+.+.++|.+...+
T Consensus 24 ~r~~aL~sL~~D~---g----L~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCl 96 (196)
T 4atg_A 24 MKDIAIECLEKES---G----LQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCV 96 (196)
T ss_dssp THHHHHHHHHHCS---S----CTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC---C----hhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 3555555543322 2 234566666554331 233333333333333321 223445677888777654
Q ss_pred cCC---ChhHHHHHHHHHHHHHHHhCh--hhHHHHHHHHHHHHhcCch--hHHHHHHHHHHHHHHHHhChhhHhhhhHHH
Q 010290 407 EDR---HWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLKDKV--YSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 479 (513)
Q Consensus 407 ~~~---~~~vR~~~~~~l~~l~~~~~~--~~~~~~~~~~l~~~l~d~~--~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~ 479 (513)
-.. ...+|..|+..++.++..++. ....+++...+.+.+.|+. ......|+..+..+ |++.....++|.
T Consensus 97 l~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l----G~~~vr~~llP~ 172 (196)
T 4atg_A 97 IGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL----SKNVVNTVIREH 172 (196)
T ss_dssp HCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH----CHHHHHTHHHHH
T ss_pred HhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh----HHHHHHHhhhcC
Confidence 221 227999999999999999877 4567789999999888764 56777777776654 776666777899
Q ss_pred HHhhhcC
Q 010290 480 VALIKSS 486 (513)
Q Consensus 480 L~~~~~~ 486 (513)
+..+.++
T Consensus 173 l~~~~~~ 179 (196)
T 4atg_A 173 AEEYKRT 179 (196)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9776644
No 122
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=94.85 E-value=0.38 Score=41.01 Aligned_cols=131 Identities=8% Similarity=-0.030 Sum_probs=87.2
Q ss_pred HHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcC-CCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHH
Q 010290 128 PLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEAAHLKSEIMSI 206 (513)
Q Consensus 128 ~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 206 (513)
.++..+..++....|+.++.++........++ -++.+...+. -++|.+-...+.+++.+....+ ..+.+.
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~----~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~-----~~~~~~ 128 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLE----EVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHL-----TELPTI 128 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHH----HHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSG-----GGHHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHH----HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHCh-----HHHHHH
Confidence 45555666666777888887777655444332 2333444443 4578887777655666654322 234566
Q ss_pred HHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 010290 207 FEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (513)
Q Consensus 207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 271 (513)
+.....+++..+|..|+.++-.. ..+.....+++.+.....|++..|+++++.+|..++..
T Consensus 129 i~~W~~s~~~w~rR~ai~~~l~~----~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~ 189 (220)
T 2b6c_A 129 FALFYGAENFWNRRVALNLQLML----KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT 189 (220)
T ss_dssp HHHHTTCSSHHHHHHHHHTTTTC----GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHH----HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence 77789999999999988866322 22233456788888899999999999999999988643
No 123
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=94.60 E-value=1 Score=38.23 Aligned_cols=131 Identities=5% Similarity=-0.028 Sum_probs=92.9
Q ss_pred HHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCCccccchHH
Q 010290 205 SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRSDVVP 283 (513)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~ 283 (513)
..+..+...+..+.|..|+..+......+.+ .-++.+...+. -.+|.+....+.+++.+... ....+.+
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~-----~~~~~~~ 127 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-----HLTELPT 127 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-----SGGGHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-----ChHHHHH
Confidence 4455566667788899999888876544333 23445555554 56899999888667777643 1234778
Q ss_pred HHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchh
Q 010290 284 AYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI 349 (513)
Q Consensus 284 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 349 (513)
.+.....+++.-+|+.|+.++-...+ +...+.+++.+.....|++..||.++...|..+++.
T Consensus 128 ~i~~W~~s~~~w~rR~ai~~~l~~~~----~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~ 189 (220)
T 2b6c_A 128 IFALFYGAENFWNRRVALNLQLMLKE----KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT 189 (220)
T ss_dssp HHHHHTTCSSHHHHHHHHHTTTTCGG----GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence 88999999999999988875532222 222355677777788999999999999999998865
No 124
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=94.17 E-value=0.69 Score=35.96 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=60.0
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHH----HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh
Q 010290 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 470 (513)
Q Consensus 396 ~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~----~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 470 (513)
...+..+..-+++++..+...|+..+..+++++|..+.. ..++..+.+++...++.||...+..+..+...++.+
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 456667777778888888888899999999998887653 347777777777778899999999999999887654
No 125
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=93.84 E-value=1.6 Score=37.43 Aligned_cols=130 Identities=12% Similarity=0.097 Sum_probs=85.2
Q ss_pred HHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhc-CCCCHHHHHHHH-HHHHHHHHHhCCCccccchHH
Q 010290 206 IFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMVA-NQLYELCEAVGPEPTRSDVVP 283 (513)
Q Consensus 206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~d~~~~vr~~~~-~~l~~l~~~~~~~~~~~~ll~ 283 (513)
.+..+..++..+.|..|+..+....+.+.++. ++.+...+ ...+|.+....+ ..++.+.... .....+
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~-----l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~-----p~~~~~ 134 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHINETH-----IPFLEELIVTKSWWDSVDSIVPTFLGDIFLKH-----PELISA 134 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGG-----HHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHC-----GGGGGG
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHH-----HHHHHHHHccCCChHHHHHhhHHHHHHHHHHC-----HHHHHH
Confidence 44456666777889888888876554444332 22333332 357899888774 5566666541 123667
Q ss_pred HHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchh
Q 010290 284 AYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI 349 (513)
Q Consensus 284 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 349 (513)
.+.....|++.-+|+.|+..+-....... ...+.+.+.....|++..|+.++..+|..+++.
T Consensus 135 ~l~~W~~s~~~w~rR~ai~~~l~~~~~~d----~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~ 196 (232)
T 3jxy_A 135 YIPKWIASDNIWLQRAAILFQLKYKQKMD----EELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT 196 (232)
T ss_dssp THHHHHHSSCHHHHHHHHHTTTTCGGGCC----HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHhCCC----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 77788888888888888766522211111 234556677788999999999999999998865
No 126
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=93.67 E-value=1.8 Score=33.93 Aligned_cols=74 Identities=4% Similarity=-0.022 Sum_probs=57.9
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHH----HHHHHHHHHHhcC------chhHHHHHHHHHHHHHHH
Q 010290 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLKD------KVYSIRDAAANNVKRLAE 465 (513)
Q Consensus 396 ~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~----~~~~~~l~~~l~d------~~~~VR~~a~~~l~~l~~ 465 (513)
...+..+..-+++++..+-..|+..+..+++.+|..+.. ..++..+.+++.+ +...||...+..+..+..
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 455666766677888888888888888888888877643 3577778888765 467899999999999999
Q ss_pred HhCh
Q 010290 466 EFGP 469 (513)
Q Consensus 466 ~~~~ 469 (513)
.++.
T Consensus 127 ~f~~ 130 (149)
T 3g2s_A 127 GLPE 130 (149)
T ss_dssp HCTT
T ss_pred HhCC
Confidence 8865
No 127
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=93.55 E-value=1.3 Score=38.03 Aligned_cols=159 Identities=10% Similarity=-0.051 Sum_probs=90.3
Q ss_pred HHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHH-HhHHHHHHHhhhhhhHHHHHHHH
Q 010290 129 LVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA-TNLGKFAATVEAAHLKSEIMSIF 207 (513)
Q Consensus 129 ~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~-~~l~~l~~~~~~~~~~~~l~~~l 207 (513)
++..+..++....|..|+..+....+...++....+ ..+.. ..++|.+-...+ ..++.+....+ + ...+.+
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l~~~-~~~l~--~~~nWd~~D~~a~~~~g~~~~~~p-~----~~~~~l 136 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHINETHIPFL-EELIV--TKSWWDSVDSIVPTFLGDIFLKHP-E----LISAYI 136 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGHHHH-HHHHT--SSCCHHHHHHHTTTHHHHHHHHCG-G----GGGGTH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHc--cCCChHHHHHhhHHHHHHHHHHCH-H----HHHHHH
Confidence 344444444444555555555444333333322222 22222 346787766553 34555554322 1 234556
Q ss_pred HHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHH
Q 010290 208 EELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVR 287 (513)
Q Consensus 208 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~ 287 (513)
.....+++..+|..|+..+-... .+.....+.+.+.....|++..|+.+++.+|..++.. ..+.+.+++.+
T Consensus 137 ~~W~~s~~~w~rR~ai~~~l~~~----~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-----~p~~v~~fl~~ 207 (232)
T 3jxy_A 137 PKWIASDNIWLQRAAILFQLKYK----QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT-----NPDVVWEYVQN 207 (232)
T ss_dssp HHHHHSSCHHHHHHHHHTTTTCG----GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-----CHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHH----hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-----CHHHHHHHHHH
Confidence 66888888888888887653221 1122345777788888999999999999999888643 12445566655
Q ss_pred hcCCCcHHHHHHHHHhHHH
Q 010290 288 LLRDNEAEVRIAAAGKVTK 306 (513)
Q Consensus 288 ~l~d~~~~vr~~a~~~l~~ 306 (513)
. .-++.++..|++.|+.
T Consensus 208 ~--~l~~~~~r~A~k~l~~ 224 (232)
T 3jxy_A 208 N--ELAPLSKREAIKHIKQ 224 (232)
T ss_dssp S--CCCHHHHHHHTTTTHH
T ss_pred C--CCCHHHHHHHHHhccc
Confidence 4 2334555666665543
No 128
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=92.92 E-value=5.3 Score=37.69 Aligned_cols=217 Identities=12% Similarity=0.040 Sum_probs=97.7
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHh--hhhhhhhhhhh-c-cCCchHHHHHHHHHhhccccccc---Cchh
Q 010290 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEER--TRKELIPFLSE-N-NDDDDEVLLAMAEELGVFIPYVG---GLEY 83 (513)
Q Consensus 11 i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~--~~~~l~~~l~~-~-~~~~~~vr~~~~~~l~~~~~~~~---~~~~ 83 (513)
+..|++.+.|+|+..|-..-..|-.+...+...+ ++..+-..+.+ + ......--..+-+.+|.+...+. .+++
T Consensus 164 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeeh 243 (449)
T 2npp_B 164 VLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEH 243 (449)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHH
Confidence 5668888899999988887777766655442221 22222222222 1 11111112233344444444332 1222
Q ss_pred hhhhhHHHHHhhccchhHHH-HHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH---
Q 010290 84 ANVLLPPLETLCTVEETCVR-DKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA--- 159 (513)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vR-~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~--- 159 (513)
...+...|.-|.....-..- ..-..|+..++.+-+ .....++..+.+.-.-.+..-...-..-+..+.+..++.
T Consensus 244 k~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp--~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~ 321 (449)
T 2npp_B 244 KIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDS--TLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFV 321 (449)
T ss_dssp HHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCG--GGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCc--HhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHH
Confidence 22222222222222221111 122344444444321 122233333333322222222333444555666777666
Q ss_pred -HHHHHHHHHHHHcCCCchHHHHHHHHhHH--HHHHHhhhhhhHHHHHHHHHHhh-----hccchhHHHHHHHHHHHhhc
Q 010290 160 -LKTELRTIYRQLCQDDMPMVRRSAATNLG--KFAATVEAAHLKSEIMSIFEELT-----QDDQDSVRLLAVEGCGALGK 231 (513)
Q Consensus 160 -~~~~l~~~l~~l~~d~~~~vr~~a~~~l~--~l~~~~~~~~~~~~l~~~l~~l~-----~d~~~~vr~~a~~~l~~l~~ 231 (513)
....++..+..++++++..|-+.|..... .+...+. .....++|++...+ ++=+..||..+..++..+.+
T Consensus 322 ~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~--~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e 399 (449)
T 2npp_B 322 KIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLIS--DNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 399 (449)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHH--TTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHH--hchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 23445666667778888888777665432 1122111 11234445444332 12245677777777665553
No 129
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=91.91 E-value=3.7 Score=32.14 Aligned_cols=75 Identities=11% Similarity=-0.065 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhh----hHHHHHHHHHHhhhc------cchhHHHHHHHHHHHhh
Q 010290 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQD------DQDSVRLLAVEGCGALG 230 (513)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~d------~~~~vr~~a~~~l~~l~ 230 (513)
-.+.+..+.+-++++++.+...+...|..+.+.+|+.. ....++.-+.+++.+ .+..||..++..+..++
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 45567777788889999999999999999999888633 234567777777764 36789999999888888
Q ss_pred ccCCh
Q 010290 231 KLLEP 235 (513)
Q Consensus 231 ~~~~~ 235 (513)
..++.
T Consensus 116 ~~f~~ 120 (148)
T 1mhq_A 116 VWFPE 120 (148)
T ss_dssp HHCTT
T ss_pred HHcCC
Confidence 77654
No 130
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=91.89 E-value=3.7 Score=32.13 Aligned_cols=76 Identities=11% Similarity=-0.042 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhh----hHHHHHHHHHHhhhc------cchhHHHHHHHHHHHhh
Q 010290 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQD------DQDSVRLLAVEGCGALG 230 (513)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~d------~~~~vr~~a~~~l~~l~ 230 (513)
-.+.+..+.+-++++++.+...+...|..+.+.+|... ....++.-+.+++.+ .+..||...++.+..++
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 35567777788888999999999999999999888632 234566666667653 46789999999888888
Q ss_pred ccCChh
Q 010290 231 KLLEPQ 236 (513)
Q Consensus 231 ~~~~~~ 236 (513)
..++..
T Consensus 126 ~~f~~~ 131 (149)
T 3g2s_A 126 VGLPEE 131 (149)
T ss_dssp HHCTTC
T ss_pred HHhCCC
Confidence 776543
No 131
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=91.75 E-value=2.9 Score=32.70 Aligned_cols=74 Identities=7% Similarity=-0.010 Sum_probs=55.9
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHH----HHHHHHHHHHhcC------chhHHHHHHHHHHHHHHH
Q 010290 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLKD------KVYSIRDAAANNVKRLAE 465 (513)
Q Consensus 396 ~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~----~~~~~~l~~~l~d------~~~~VR~~a~~~l~~l~~ 465 (513)
...+..+..-+++++..+...|+..+..+++++|..+.. ..++..+.+++.+ ....||...+..+..+..
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 445556666667788888888888888888888876543 3577777777764 367999999999999988
Q ss_pred HhCh
Q 010290 466 EFGP 469 (513)
Q Consensus 466 ~~~~ 469 (513)
.++.
T Consensus 117 ~f~~ 120 (148)
T 1mhq_A 117 WFPE 120 (148)
T ss_dssp HCTT
T ss_pred HcCC
Confidence 8764
No 132
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=91.44 E-value=4 Score=31.60 Aligned_cols=75 Identities=11% Similarity=-0.013 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhh----HHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCh
Q 010290 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHL----KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 235 (513)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (513)
-.+.+..+.+-+++.++.+...+...|..+.+.+|+... ...++.-+.+++...++.|+...+..+..++..++.
T Consensus 40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 456677777778888888888888888888888876322 234555555555556677777777777777765544
No 133
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=91.17 E-value=4.9 Score=32.07 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=57.0
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHH----HHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHHhChh
Q 010290 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPD 470 (513)
Q Consensus 396 ~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~----~~~~~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~ 470 (513)
...+..+..-+++++..+...|+..+..+++++|..+.. ..++..+.+++.. .++.||..++..+..+...++.+
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 130 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD 130 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 455666666677788888888899999999888876542 3466666676654 56799999999999998887653
No 134
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=91.01 E-value=8.4 Score=34.56 Aligned_cols=187 Identities=9% Similarity=0.024 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhhccC-Chh----hh---hhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 010290 200 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL-EPQ----DC---VAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (513)
Q Consensus 200 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~-~~~----~~---~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 271 (513)
.+.++..+...+..-+.+.|..+...+..+...- +.. ++ .+.++..+....++++-..- +...|-.....
T Consensus 76 ~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~--~G~mLRecir~ 153 (341)
T 1upk_A 76 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALN--CGIMLRECIRH 153 (341)
T ss_dssp HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHH--HHHHHHHHHTS
T ss_pred HhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhH--HHHHHHHHHHh
Confidence 3455556666666666777777777776665432 111 01 23466666666666543211 11111111100
Q ss_pred --hCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhCh---H---HHHHhhhhhhhhhcCCCcHHHHHHHHHHH
Q 010290 272 --VGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---E---LAIQHILPCVKELSSDSSQHVRSALATVI 343 (513)
Q Consensus 272 --~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l 343 (513)
+.........+-.+....+.++.+|-.-|...+..+...... + ...+.+...+..+++++++-.|+..+..|
T Consensus 154 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLL 233 (341)
T 1upk_A 154 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLL 233 (341)
T ss_dssp HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 000000112233455677888889988888888776653110 1 11234455666788889999999999999
Q ss_pred HHhchhhCHHHHH------HhHHHHHHHhcCCCChHHHHHHHHHHHHhhhh
Q 010290 344 MGMAPILGKDATI------EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (513)
Q Consensus 344 ~~l~~~~~~~~~~------~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~ 388 (513)
+.+.-.-....+. ..-+..+..+|+|+...++..|...+.-++..
T Consensus 234 gelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 234 GELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 8886332222111 34577888889999999998888888877653
No 135
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=90.96 E-value=3.8 Score=32.71 Aligned_cols=74 Identities=11% Similarity=0.042 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhh----hHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhhccCCh
Q 010290 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP 235 (513)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~ 235 (513)
.+.+..+.+.++++++.++..++..|..+.+.+|+.. ....++.-+.+++.. .++.||..++..+..+...++.
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4566677777788888898888888888888887632 223455555555544 4567888888877777766554
No 136
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=90.26 E-value=3.8 Score=33.03 Aligned_cols=74 Identities=5% Similarity=-0.007 Sum_probs=51.5
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHH----HHHHHHHHHHhcC------chhHHHHHHHHHHHHHHH
Q 010290 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLKD------KVYSIRDAAANNVKRLAE 465 (513)
Q Consensus 396 ~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~----~~~~~~l~~~l~d------~~~~VR~~a~~~l~~l~~ 465 (513)
...+..+..-+++++..+...|+..+..+++++|..+.. ..++.-+.+++.. ....||..++..+..+..
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 344555655566777777777777777777777765533 3466667776652 357899999999998888
Q ss_pred HhCh
Q 010290 466 EFGP 469 (513)
Q Consensus 466 ~~~~ 469 (513)
.++.
T Consensus 129 ~f~~ 132 (171)
T 1juq_A 129 ALPE 132 (171)
T ss_dssp HCTT
T ss_pred HcCC
Confidence 8765
No 137
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=90.18 E-value=6.3 Score=31.72 Aligned_cols=75 Identities=11% Similarity=-0.044 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhh----hHHHHHHHHHHhhhc------cchhHHHHHHHHHHHhh
Q 010290 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQD------DQDSVRLLAVEGCGALG 230 (513)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~d------~~~~vr~~a~~~l~~l~ 230 (513)
-.+.+..+.+-++++++.|...++..|..+.+.+|... ....++.-+.+++.. .+..||..+++.+..+.
T Consensus 48 ~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 35567778888889999999999999999999888632 234566666666652 35789999999999888
Q ss_pred ccCCh
Q 010290 231 KLLEP 235 (513)
Q Consensus 231 ~~~~~ 235 (513)
..++.
T Consensus 128 ~~f~~ 132 (171)
T 1juq_A 128 MALPE 132 (171)
T ss_dssp HHCTT
T ss_pred HHcCC
Confidence 77654
No 138
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=88.82 E-value=7.9 Score=32.84 Aligned_cols=75 Identities=16% Similarity=0.175 Sum_probs=51.3
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHH----HHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhChh
Q 010290 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPD 470 (513)
Q Consensus 396 ~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~----~~~~~~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~ 470 (513)
...+..|..-+++++..+...|+..+..+++++|..+.. ..++..+.+++. .+...||..++..+..+...+..+
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNE 123 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 455566666666777777777777777777777775433 235555555553 345789999999998888887553
No 139
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=87.09 E-value=11 Score=32.04 Aligned_cols=75 Identities=12% Similarity=0.041 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhh----hHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhhccCCh
Q 010290 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP 235 (513)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~ 235 (513)
-.+.+..+.+-++++++.+...++..|..+.+..|... ....++..+.++++. .+..|+..+++.+..++..+..
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 35567777888889999999999999999999887632 233455555555543 4567888888888887766554
No 140
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=86.38 E-value=21 Score=33.13 Aligned_cols=174 Identities=14% Similarity=0.043 Sum_probs=78.9
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHh--hhhhhhhhhhh-c-cCCchHHHHHHHHHhhcccccccC---chh
Q 010290 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEER--TRKELIPFLSE-N-NDDDDEVLLAMAEELGVFIPYVGG---LEY 83 (513)
Q Consensus 11 i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~--~~~~l~~~l~~-~-~~~~~~vr~~~~~~l~~~~~~~~~---~~~ 83 (513)
+..+++.+.|+|+..|-..-..|-.+...+...+ ++..+-..+.+ + ..+...--..+-+.+|.+...+.. +++
T Consensus 131 i~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeeh 210 (403)
T 3fga_B 131 VLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEH 210 (403)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHH
Confidence 5667888889999988887777766654443221 22222222222 1 111111112333444444443321 222
Q ss_pred hhhhhHHHHHhhccchhHH-HHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH---
Q 010290 84 ANVLLPPLETLCTVEETCV-RDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA--- 159 (513)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~v-R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~--- 159 (513)
...+...|.-|-..+.-.+ -..-..|+..++++-+ .....++..+.+.-.-.+..-...-..-+..+.+..++.
T Consensus 211 k~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp--~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~ 288 (403)
T 3fga_B 211 KIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDS--TLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFV 288 (403)
T ss_dssp HHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCG--GGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCc--hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHH
Confidence 2222222222222221111 1122334444444321 122223333333322333333334444555677777766
Q ss_pred -HHHHHHHHHHHHcCCCchHHHHHHHHh
Q 010290 160 -LKTELRTIYRQLCQDDMPMVRRSAATN 186 (513)
Q Consensus 160 -~~~~l~~~l~~l~~d~~~~vr~~a~~~ 186 (513)
....++..+..++.+++..|-+.|...
T Consensus 289 ~i~~~lf~~la~ci~S~hfqVAErAL~~ 316 (403)
T 3fga_B 289 KIMEPLFRQLAKCVSSPHFQVAERALYY 316 (403)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 334456666677788888887766544
No 141
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=85.36 E-value=7.5 Score=30.74 Aligned_cols=70 Identities=7% Similarity=0.102 Sum_probs=45.5
Q ss_pred HHHHHHhhc-CCCcchhhhHHhhhHhhcCCCCHHHH-----HHHHHH-HHHHcC---CCchHHHHHHHHhHHHHHHHhhh
Q 010290 127 IPLVKRLAA-GEWFTARVSSCGLFHVAYPSAPEALK-----TELRTI-YRQLCQ---DDMPMVRRSAATNLGKFAATVEA 196 (513)
Q Consensus 127 ~~~l~~l~~-d~~~~~R~~~~~~l~~~~~~~~~~~~-----~~l~~~-l~~l~~---d~~~~vr~~a~~~l~~l~~~~~~ 196 (513)
+..|..-.+ ..++.+...|..++..+++++|.... .++++. +..++. ++...||..+.+.+...+..++.
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~ 134 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRS 134 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 334443333 46677778888888888888887732 334554 455553 34468888888888888876653
No 142
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=85.34 E-value=20 Score=32.04 Aligned_cols=71 Identities=8% Similarity=0.064 Sum_probs=53.2
Q ss_pred hHHHHHHHhhcC---CChhHHHHHHHHHHHHHHHh-------ChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 010290 397 SLLPAIVELAED---RHWRVRLAIIEYIPLLASQL-------GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (513)
Q Consensus 397 ~l~~~l~~l~~~---~~~~vR~~~~~~l~~l~~~~-------~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~ 466 (513)
.+..+-.++.++ ..++.|......+..+...+ +++.+. .++..+....+++..+|-..+++.+-.+..+
T Consensus 119 ~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fk-lvidsiiWa~kH~~r~V~e~gL~il~~ll~n 197 (321)
T 1w9c_A 119 AVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFK-LVLDSIIWAFKHTMRNVADTGLQILFTLLQN 197 (321)
T ss_dssp HHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHH-HHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 333334445553 46889999999998888763 333333 4788888889999999999999999999888
Q ss_pred hC
Q 010290 467 FG 468 (513)
Q Consensus 467 ~~ 468 (513)
++
T Consensus 198 ~~ 199 (321)
T 1w9c_A 198 VA 199 (321)
T ss_dssp HH
T ss_pred Hh
Confidence 74
No 143
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=84.13 E-value=26 Score=32.34 Aligned_cols=208 Identities=11% Similarity=0.104 Sum_probs=115.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHH--h----CCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhh-ChH-HHHHhhhh
Q 010290 251 QDKSWRVRYMVANQLYELCEA--V----GPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL-NPE-LAIQHILP 322 (513)
Q Consensus 251 ~d~~~~vr~~~~~~l~~l~~~--~----~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~-~~~~~l~~ 322 (513)
.+++|.--..+-+.+-.+... + .......+++-.++.+++.+|+.=|......+.++...+ +.. .+...+-.
T Consensus 139 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~n 218 (392)
T 2jak_A 139 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 218 (392)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888777776777666543 1 123334567788888899999988888877776665432 221 22233333
Q ss_pred hhhhhcCCCcH-HHHHHHHHHHHHhchhhC---HHHHHHhHHHHHHHhcCCCChHHHH-HHHHHHHHhhhhhhhhhhhhh
Q 010290 323 CVKELSSDSSQ-HVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPDVRL-NIISKLDQVNQVIGIDLLSQS 397 (513)
Q Consensus 323 ~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~-~a~~~l~~i~~~~~~~~~~~~ 397 (513)
.+..+..+... .--...++.++.+...+. ++.....+...++.+.+.+...+-. .-..++..+++. ...+...
T Consensus 219 if~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK--Dp~L~~~ 296 (392)
T 2jak_A 219 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTEP 296 (392)
T ss_dssp HHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHH--CGGGHHH
T ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhc--CchhHHH
Confidence 33444332221 111245666666666554 2222333455555555554322221 222333333332 1123344
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHH---HHHHhcCchhHHHHHHHHHH
Q 010290 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL---CMQWLKDKVYSIRDAAANNV 460 (513)
Q Consensus 398 l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~---l~~~l~d~~~~VR~~a~~~l 460 (513)
++..+....--.+..-....+.-+..+...+++..|.....|. +-+++++++..|-+.|+..+
T Consensus 297 vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 297 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 4444444433334444456777788888888888776543333 45578899999999888776
No 144
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=83.72 E-value=24 Score=32.59 Aligned_cols=30 Identities=17% Similarity=0.147 Sum_probs=21.2
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHHh
Q 010290 11 IAVLIDELKNDDIQLRLNSIRRLSTIARAL 40 (513)
Q Consensus 11 i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~ 40 (513)
+..+++.+.|+|+..|-.-...|-.+....
T Consensus 176 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf 205 (392)
T 2jak_A 176 VLQLLELFDSEDPRERDFLKTTLHRIYGKF 205 (392)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHH
Confidence 556777788888888877776666665443
No 145
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=83.56 E-value=15 Score=29.03 Aligned_cols=74 Identities=11% Similarity=0.160 Sum_probs=55.5
Q ss_pred hhHHHHHHHhhc-CCChhHHHHHHHHHHHHHHHhChhhHH----HHHHHH-HHHHhc---CchhHHHHHHHHHHHHHHHH
Q 010290 396 QSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGAL-CMQWLK---DKVYSIRDAAANNVKRLAEE 466 (513)
Q Consensus 396 ~~l~~~l~~l~~-~~~~~vR~~~~~~l~~l~~~~~~~~~~----~~~~~~-l~~~l~---d~~~~VR~~a~~~l~~l~~~ 466 (513)
...+..+..-++ +++..+...|+..+..+++++|..+.. ..++.- +.+++. ++...||..++..+..+...
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 455566666665 578888889999999999998887643 346665 566663 34568999999999999988
Q ss_pred hCh
Q 010290 467 FGP 469 (513)
Q Consensus 467 ~~~ 469 (513)
++.
T Consensus 132 f~~ 134 (157)
T 1elk_A 132 FRS 134 (157)
T ss_dssp HTT
T ss_pred cCC
Confidence 764
No 146
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=80.51 E-value=11 Score=31.69 Aligned_cols=73 Identities=11% Similarity=0.099 Sum_probs=45.2
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHH----HHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhCh
Q 010290 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGP 469 (513)
Q Consensus 397 ~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~----~~~~~~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~ 469 (513)
..+..+..-+++++..+...|+..+..+++.+|..+.. ..++..+.+++. .+...||..+++.+..+...++.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 34444444455566666666666666666665554322 234555555544 45678999999998888887764
No 147
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=79.90 E-value=18 Score=27.49 Aligned_cols=84 Identities=11% Similarity=0.033 Sum_probs=54.6
Q ss_pred ChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhh
Q 010290 312 NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 391 (513)
Q Consensus 312 ~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~ 391 (513)
+.+.. ..++|.+...++|.||.+...++..+..+. +.+.|.+.+.+++.+..=....+..+ ...+..
T Consensus 25 ~~~~i-~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~---------~~l~p~I~~vl~s~D~~W~ywil~~l---v~~~~~ 91 (134)
T 3ut4_A 25 IDNEI-EPIIFDLLKWLQDYNWPIAKDILPVVVLHQ---------SIAMPHILTILQGNDIMWKYWVIKLM---IPYLIY 91 (134)
T ss_dssp CHHHH-HHHHHHHHGGGSCTTSTTHHHHHHHHHHTH---------HHHHHHHHHHHHSSCHHHHHHHHHHH---GGGCCH
T ss_pred CHHHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHcc---------HhhHHHHHHHHHcCChHHHHHHHHHH---HHcCCH
Confidence 44443 556788888899999999888888776542 34667777777776665555544433 333332
Q ss_pred hhhhhhHHHHHHHhhcCC
Q 010290 392 DLLSQSLLPAIVELAEDR 409 (513)
Q Consensus 392 ~~~~~~l~~~l~~l~~~~ 409 (513)
+ ....+.+.+..+...+
T Consensus 92 ~-~~~~l~~eL~rl~~~p 108 (134)
T 3ut4_A 92 P-NKQLVKSELERLSSLE 108 (134)
T ss_dssp H-HHHHHHHHHHHHHTCC
T ss_pred H-HHHHHHHHHHHHHhCC
Confidence 2 3367778888887765
No 148
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=79.68 E-value=25 Score=29.52 Aligned_cols=73 Identities=11% Similarity=0.088 Sum_probs=49.9
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhh----hHHHHHHHHHHhhh-ccchhHHHHHHHHHHHhhccCC
Q 010290 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLE 234 (513)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~ 234 (513)
.+.+..+.+-++++++.+...++..|..+.+..|+.. ....++..+.+++. ..+..||..+++.+..++..+.
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 4566677777888999999999999999988877532 22334454555544 3456788877777777665544
No 149
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=78.68 E-value=19 Score=27.27 Aligned_cols=87 Identities=7% Similarity=-0.165 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccC
Q 010290 154 PSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL 233 (513)
Q Consensus 154 ~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~ 233 (513)
+..+.+....+++.++.-++|.||.+...++..|..+.. .++|.+.+.++.+++.=.. ..+..+...+
T Consensus 22 ~~~~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~~---------~l~p~I~~vl~s~D~~W~y---wil~~lv~~~ 89 (134)
T 3ut4_A 22 CKLIDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLHQS---------IAMPHILTILQGNDIMWKY---WVIKLMIPYL 89 (134)
T ss_dssp TTCCHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHTHH---------HHHHHHHHHHHSSCHHHHH---HHHHHHGGGC
T ss_pred HhCCHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHccH---------hhHHHHHHHHHcCChHHHH---HHHHHHHHcC
Confidence 344666778889999999999999998888777776542 4556666666544433222 2233344444
Q ss_pred ChhhhhhhHHHHHHHhcCCC
Q 010290 234 EPQDCVAHILPVIVNFSQDK 253 (513)
Q Consensus 234 ~~~~~~~~l~~~l~~~~~d~ 253 (513)
+.+ ....+.+-+.++...+
T Consensus 90 ~~~-~~~~l~~eL~rl~~~p 108 (134)
T 3ut4_A 90 IYP-NKQLVKSELERLSSLE 108 (134)
T ss_dssp CHH-HHHHHHHHHHHHHTCC
T ss_pred CHH-HHHHHHHHHHHHHhCC
Confidence 432 3445666677766554
No 150
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=78.40 E-value=46 Score=31.42 Aligned_cols=229 Identities=11% Similarity=0.097 Sum_probs=119.9
Q ss_pred CCCHHHHHHHHHHHHHHHHH--hCC----CccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhh-ChH-HHHHhhhhh
Q 010290 252 DKSWRVRYMVANQLYELCEA--VGP----EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL-NPE-LAIQHILPC 323 (513)
Q Consensus 252 d~~~~vr~~~~~~l~~l~~~--~~~----~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~-~~~~~l~~~ 323 (513)
+++|.--..+-+.|-.+... +.. ......++-.++.+++.+|+.=|...-..|.++...+ +.. .+...+-..
T Consensus 128 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~ni 207 (449)
T 2npp_B 128 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 207 (449)
T ss_dssp CTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66787666666666666532 211 1223457777888888888888887777776665433 221 222223233
Q ss_pred hhhhcCCCc-HHHHHHHHHHHHHhchhhC---HHHHHHhHHHHHHHhcCCCChHHHH-HHHHHHHHhhhhhhhhhhhhhH
Q 010290 324 VKELSSDSS-QHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPDVRL-NIISKLDQVNQVIGIDLLSQSL 398 (513)
Q Consensus 324 l~~~~~d~~-~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~-~a~~~l~~i~~~~~~~~~~~~l 398 (513)
+..++.+.. ..--...++.++.+...+. ++.....+...++.+.+.+...+-. .-..++..+++. ...+...+
T Consensus 208 f~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK--Dp~L~~~v 285 (449)
T 2npp_B 208 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTEPV 285 (449)
T ss_dssp HHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHH--CGGGHHHH
T ss_pred HHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhc--CcHhHHHH
Confidence 333332211 1111245666666665443 1222333445555555554433221 222333333332 11233344
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHH---HHHHHHHHhcCchhHHHHHHHHHHH--HHHHHhChhhHh
Q 010290 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK---LGALCMQWLKDKVYSIRDAAANNVK--RLAEEFGPDWAM 473 (513)
Q Consensus 399 ~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~---~~~~l~~~l~d~~~~VR~~a~~~l~--~l~~~~~~~~~~ 473 (513)
+..+...---.+..-....+.-+..+...+++..|... +...+-+++++++..|-+.|+..+. .+...+.. ..
T Consensus 286 i~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~--n~ 363 (449)
T 2npp_B 286 VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD--NA 363 (449)
T ss_dssp HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHT--TH
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHh--ch
Confidence 44444443344544445667777778877777777654 3444455788999999999887762 23333221 12
Q ss_pred hhhHHHHHhhh
Q 010290 474 QHIVPQVALIK 484 (513)
Q Consensus 474 ~~i~~~L~~~~ 484 (513)
+.++|.+...+
T Consensus 364 ~~IlPii~p~L 374 (449)
T 2npp_B 364 AKILPIMFPSL 374 (449)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhHHhhHHHH
Confidence 45666665533
No 151
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=76.55 E-value=19 Score=30.85 Aligned_cols=87 Identities=15% Similarity=0.214 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhcCh------HHHHhhHHHHHHHhhcCC-CcchhhhHHhhhHhhcCCCCHH-----HHHHHHHHHHHHc
Q 010290 105 KAVESLCRIGSQMRE------QDVVEHFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPEA-----LKTELRTIYRQLC 172 (513)
Q Consensus 105 ~a~~~l~~l~~~~~~------~~~~~~~~~~l~~l~~d~-~~~~R~~~~~~l~~~~~~~~~~-----~~~~l~~~l~~l~ 172 (513)
.|+..+..++.+-.. ..+.-++.|++....++. ....|.++...++.+++.-+.+ ...+++|..+..+
T Consensus 75 naLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim 154 (268)
T 2fv2_A 75 NALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM 154 (268)
T ss_dssp HHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH
Confidence 455555666654332 233445777776544443 3677889999999998876666 3356777777777
Q ss_pred CCCchHHHHHHHHhHHHHH
Q 010290 173 QDDMPMVRRSAATNLGKFA 191 (513)
Q Consensus 173 ~d~~~~vr~~a~~~l~~l~ 191 (513)
+..+..-|.-|.-.+..+.
T Consensus 155 e~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 155 ESGSELSKTVATFILQKIL 173 (268)
T ss_dssp HHSCHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHh
Confidence 7777666665555555544
No 152
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=76.08 E-value=25 Score=27.20 Aligned_cols=72 Identities=17% Similarity=0.082 Sum_probs=52.2
Q ss_pred hhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhh---HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 010290 395 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (513)
Q Consensus 395 ~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~ 466 (513)
.+.++..+.+.+.......|..++..+..+++..|.++ |...+.+.+.......+..+|....+.+..+-+.
T Consensus 41 a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 41 AQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCc
Confidence 36677777777777778888999999999999887653 3334555555555555678898888888887754
No 153
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=72.84 E-value=12 Score=28.81 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=45.9
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhH
Q 010290 403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 472 (513)
Q Consensus 403 ~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~ 472 (513)
.+...+.+|..=-..+.=|+.+......+. ...+++++.+-|+++.++|...|++.|..++..-++.+.
T Consensus 17 ~~ATs~d~~~~pgylm~EIA~~T~~s~~~~-~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~ 85 (140)
T 1vdy_A 17 DAVTSDEDKVAPVYKLEEICDLLRSSHVSI-VKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFR 85 (140)
T ss_dssp HHTTCSCSSCCCHHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHH
T ss_pred HHHhcCCCCCCcHHHHHHHHHHHHhcchhH-HHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHH
Confidence 344455555544444444444443322232 356999999999999999999999999999976554443
No 154
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=72.65 E-value=53 Score=29.36 Aligned_cols=60 Identities=13% Similarity=0.022 Sum_probs=46.4
Q ss_pred CCCcchhhhHHhhhHhhcCCC-------CHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhh
Q 010290 136 GEWFTARVSSCGLFHVAYPSA-------PEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE 195 (513)
Q Consensus 136 d~~~~~R~~~~~~l~~~~~~~-------~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 195 (513)
++.+..|..-..++.++..++ +++..+.+++.+...++++..+|...+...+..+.+.+.
T Consensus 133 ~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 133 EEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp TCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 356888888888887766543 555667788888888999999999999888887777664
No 155
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=70.27 E-value=62 Score=29.14 Aligned_cols=11 Identities=18% Similarity=-0.073 Sum_probs=6.1
Q ss_pred HHHHHhcCchh
Q 010290 440 LCMQWLKDKVY 450 (513)
Q Consensus 440 ~l~~~l~d~~~ 450 (513)
.+..++.|+..
T Consensus 274 ~l~~L~~d~~g 284 (333)
T 3bwt_A 274 GIQSLLNDSYG 284 (333)
T ss_dssp HHHHHHTSTTH
T ss_pred HHHHHHcCChH
Confidence 44556666554
No 156
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=68.47 E-value=54 Score=27.80 Aligned_cols=126 Identities=13% Similarity=0.029 Sum_probs=74.6
Q ss_pred HHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHH
Q 010290 206 IFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAY 285 (513)
Q Consensus 206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l 285 (513)
...++..++.-+.|..|...+.. ..+. ...++.+.. .-.+|.+...++..+ ++. .+...+.+
T Consensus 52 la~~Lw~~~~~E~r~lA~li~~~--~~~~-----~~~~~~~v~--~~~nWd~~D~~~~~l------~~~---~~~~~~~~ 113 (235)
T 1t06_A 52 LAEELYATGNYDAMYFAGIIADP--KAMS-----ESDFDRWID--GAYFYMLSDYVVAVT------LSE---SNIAQDVA 113 (235)
T ss_dssp HHHHHHHTCCHHHHHHHHHHCCG--GGCC-----HHHHHHHHH--TCCSHHHHHHTHHHH------HTT---SSSHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHhhCH--HhcC-----HHHHHHHHh--CCCcHHHHHHHHHHH------Hhc---CchHHHHH
Confidence 34456666666667666633211 1111 112222211 235688776653333 222 24466777
Q ss_pred HHhcCCCcHHHHHHHHH----hHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchh
Q 010290 286 VRLLRDNEAEVRIAAAG----KVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI 349 (513)
Q Consensus 286 ~~~l~d~~~~vr~~a~~----~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 349 (513)
...+.+++.-+|..|+. .+..+......+...+.++..+...+.|+.+.|+.++..+|..++..
T Consensus 114 ~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~ 181 (235)
T 1t06_A 114 DKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAIS 181 (235)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhh
Confidence 88888999899988887 33431111112344567778887788999999999999998777653
No 157
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=67.21 E-value=80 Score=29.27 Aligned_cols=208 Identities=10% Similarity=0.070 Sum_probs=114.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhC------CCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhCh-H-HHHHhhhh
Q 010290 251 QDKSWRVRYMVANQLYELCEAVG------PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-E-LAIQHILP 322 (513)
Q Consensus 251 ~d~~~~vr~~~~~~l~~l~~~~~------~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-~-~~~~~l~~ 322 (513)
.+++|.--..+-+.+..+...-. +......++-.++.+++.+|+.=|...-..+.++...+.. . .+...+-.
T Consensus 94 ~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~inn 173 (403)
T 3fga_B 94 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 173 (403)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 46788877777777766654321 2233445777788899999998888877777765543321 1 12222223
Q ss_pred hhhhhcCCCc-HHHHHHHHHHHHHhchhhCH---HHHHHhHHHHHHHhcCCCChHHH-HHHHHHHHHhhhhhhhhhhhhh
Q 010290 323 CVKELSSDSS-QHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVR-LNIISKLDQVNQVIGIDLLSQS 397 (513)
Q Consensus 323 ~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr-~~a~~~l~~i~~~~~~~~~~~~ 397 (513)
.+..++-+.. ..--...++.++.+...+.. +.....+...++.+-+.+...+- ..-..++..+++. ...+...
T Consensus 174 if~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eK--Dp~L~~~ 251 (403)
T 3fga_B 174 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTEP 251 (403)
T ss_dssp HHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHH--CGGGHHH
T ss_pred HHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHh--CchhHHH
Confidence 3333322211 11112456666666655431 11223344555555555443322 2333334444332 1123344
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHH---HHHHHHHhcCchhHHHHHHHHHH
Q 010290 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL---GALCMQWLKDKVYSIRDAAANNV 460 (513)
Q Consensus 398 l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~---~~~l~~~l~d~~~~VR~~a~~~l 460 (513)
++..+...---.+..-....+.-+..+...+++..|.... ...+-+++++++..|-+.|+..+
T Consensus 252 vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~w 317 (403)
T 3fga_B 252 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 317 (403)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGG
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 4444444444455555556777778888888877766543 33444577899999999988877
No 158
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=66.86 E-value=73 Score=28.65 Aligned_cols=110 Identities=9% Similarity=0.025 Sum_probs=62.7
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhhhh-hhhhh--hhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChh--hHH
Q 010290 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFD 434 (513)
Q Consensus 360 ~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~-~~~~~--~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~--~~~ 434 (513)
+..+++...+.+.+...-++.+|+.+.... |.+.+ ....+..+..+..+.+..|-+.++..+..++...... .+.
T Consensus 162 L~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~ 241 (339)
T 3dad_A 162 LSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFI 241 (339)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHH
Confidence 445555555556666666666666665542 21111 1345555555656555556666666666655442111 111
Q ss_pred HH-----------HHHHHHHHhc---CchhHHHHHHHHHHHHHHHHhCh
Q 010290 435 DK-----------LGALCMQWLK---DKVYSIRDAAANNVKRLAEEFGP 469 (513)
Q Consensus 435 ~~-----------~~~~l~~~l~---d~~~~VR~~a~~~l~~l~~~~~~ 469 (513)
+. .++.++..+. ..+.+++..|...+..+....+.
T Consensus 242 ~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd 290 (339)
T 3dad_A 242 RAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPD 290 (339)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 00 1446666775 56788888888888888877654
No 159
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=66.43 E-value=33 Score=26.33 Aligned_cols=64 Identities=13% Similarity=0.076 Sum_probs=39.0
Q ss_pred HHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHH
Q 010290 130 VKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAAT 193 (513)
Q Consensus 130 l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 193 (513)
+.+..+|++|..--....=++.+......+...++++.+.+-++++++.|+..+++.|.-++..
T Consensus 16 V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~ 79 (140)
T 1vdy_A 16 IDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGK 79 (140)
T ss_dssp HHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHh
Confidence 4455555554433222222222222223334578889999999999999888888888877754
No 160
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=62.60 E-value=88 Score=28.12 Aligned_cols=145 Identities=12% Similarity=0.010 Sum_probs=77.1
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHhh---cChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH----HHH
Q 010290 90 PLETLCTVEETCVRDKAVESLCRIGSQ---MREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA----LKT 162 (513)
Q Consensus 90 ~l~~l~~~~~~~vR~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~----~~~ 162 (513)
+++.+.+.... .+..++..|..+... +-.+.+...-+..+.....+.+......+..++..+..+...- ...
T Consensus 123 iiekL~~~~~~-~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 123 ILEKLYSSSGP-ELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHCCHH-HHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHhcCCcH-HHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 34444433333 344455555553321 1123333444555555555555566666666666666542111 135
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhh--hhhHHH-----------HHHHHHHhhh---ccchhHHHHHHHHH
Q 010290 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHLKSE-----------IMSIFEELTQ---DDQDSVRLLAVEGC 226 (513)
Q Consensus 163 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~-----------l~~~l~~l~~---d~~~~vr~~a~~~l 226 (513)
.++..+..++...+..|-+.+.+.|..++..... ..+... .++.+...++ ..+.+++..|+..+
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 5677777777778888888888888888765421 111111 1233444444 34566666666666
Q ss_pred HHhhccCCh
Q 010290 227 GALGKLLEP 235 (513)
Q Consensus 227 ~~l~~~~~~ 235 (513)
..+....+.
T Consensus 282 N~lL~~apd 290 (339)
T 3dad_A 282 NKTLAALPD 290 (339)
T ss_dssp HHHHHHCSS
T ss_pred HHHHhcCCC
Confidence 666655553
No 161
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=60.98 E-value=38 Score=28.81 Aligned_cols=69 Identities=7% Similarity=0.026 Sum_probs=50.6
Q ss_pred HHHHHHHhhhccchhHHHHHHH----HHHHhhccCChhhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 010290 203 IMSIFEELTQDDQDSVRLLAVE----GCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (513)
Q Consensus 203 l~~~l~~l~~d~~~~vr~~a~~----~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 271 (513)
..+.+...+.+++.-+|..++. .+..+.....++.....+++.+...+.|++..|+.++..+|..++..
T Consensus 109 ~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~ 181 (235)
T 1t06_A 109 AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAIS 181 (235)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhh
Confidence 4556667888888888888888 44442211113345667888888888999999999999999888765
No 162
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=60.48 E-value=1e+02 Score=28.20 Aligned_cols=16 Identities=6% Similarity=0.274 Sum_probs=8.1
Q ss_pred hHHhhhHhhcCCCCHH
Q 010290 144 SSCGLFHVAYPSAPEA 159 (513)
Q Consensus 144 ~~~~~l~~~~~~~~~~ 159 (513)
.+++.+..+.+..+++
T Consensus 41 ~gsR~lQ~~l~~~~~~ 56 (369)
T 3k49_A 41 HGSRFIQRELATSPAS 56 (369)
T ss_dssp HHHHHHHHHHTTCCHH
T ss_pred cchHHHHHHhccCCHH
Confidence 3445555555555544
No 163
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=58.74 E-value=1.7e+02 Score=30.17 Aligned_cols=113 Identities=9% Similarity=0.022 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhh--hhhhHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhhccCC
Q 010290 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE--AAHLKSEIMSIFEELTQD---DQDSVRLLAVEGCGALGKLLE 234 (513)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~l~~d---~~~~vr~~a~~~l~~l~~~~~ 234 (513)
....+++.+...+.+++..+...+..++..++-.-+ ++.+.+.++..+...+.. .+..--.++++++..++..+-
T Consensus 336 fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv 415 (799)
T 1vsy_4 336 IVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIV 415 (799)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHh
Confidence 345566777777889999999999999998886433 145555555554445544 334444567888887776543
Q ss_pred h-hhhhhhHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHh
Q 010290 235 P-QDCVAHILPVIVN---FSQDKSWRVRYMVANQLYELCEAV 272 (513)
Q Consensus 235 ~-~~~~~~l~~~l~~---~~~d~~~~vr~~~~~~l~~l~~~~ 272 (513)
. ..+..++.+.+.. .+.-.++.--....+.+..+...+
T Consensus 416 ~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~i 457 (799)
T 1vsy_4 416 MDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFI 457 (799)
T ss_dssp TSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTS
T ss_pred cCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhc
Confidence 2 2233445544443 444445554555667777776654
No 164
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=58.56 E-value=63 Score=25.20 Aligned_cols=70 Identities=10% Similarity=0.081 Sum_probs=38.6
Q ss_pred HHHHHHHhcC-ccHHHHHHHhhcHHHHHHHhChHhh----hhhhhhh-hhh-cc---CCchHHHHHHHHHhhcccccccC
Q 010290 11 IAVLIDELKN-DDIQLRLNSIRRLSTIARALGEERT----RKELIPF-LSE-NN---DDDDEVLLAMAEELGVFIPYVGG 80 (513)
Q Consensus 11 i~~l~~~l~~-~d~~~r~~a~~~l~~i~~~~~~~~~----~~~l~~~-l~~-~~---~~~~~vr~~~~~~l~~~~~~~~~ 80 (513)
+..+...|++ .++.+...|+..|....+..|.... ..+++.- +.. +. .....|+..+...+..++..+++
T Consensus 55 ~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~ 134 (152)
T 3rru_A 55 VKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPG 134 (152)
T ss_dssp HHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 4445566663 4666667777777777777765421 1223321 222 11 12335777777777766665554
No 165
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=56.30 E-value=62 Score=24.37 Aligned_cols=115 Identities=6% Similarity=0.001 Sum_probs=64.9
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhCh---hhHHHH
Q 010290 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDK 436 (513)
Q Consensus 360 ~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~ 436 (513)
+...++-|+.....+...+..++...-. .+.++..+.+.+.......|...+..+..+.+..+. ..|.+.
T Consensus 10 l~~~L~~L~~s~~sI~~~s~w~l~h~~~-------a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~ 82 (132)
T 4flb_A 10 LDRKFQSVTNTMESIQGLSSWCIENKKH-------HSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRES 82 (132)
T ss_dssp HHHHHHHCCSSHHHHHHHHHHHHHTGGG-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHH
T ss_pred HHHHHHHCcccHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHH
Confidence 3334445666666677766666665322 255666666666666777888999999999887643 234444
Q ss_pred HHHHHHHHhcC-chhHHHHHHHHHHHHHHHHhChhhHhhhhHHHHHhhh
Q 010290 437 LGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIK 484 (513)
Q Consensus 437 ~~~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~~L~~~~ 484 (513)
+.+.+...+.. .++..|....+.+..+-+. ..+.+.++..|...+
T Consensus 83 f~~~l~~~~~~~~~~~~~~kl~~ll~iW~~r---~vf~~~~i~~L~~~L 128 (132)
T 4flb_A 83 FADVLPEAAALVKDPSVSKSVERIFKIWEDR---NVYPEEMIVALREAL 128 (132)
T ss_dssp HHTTHHHHHHTTCSTTTHHHHHHHHHHHHHH---TSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhccC---CCcCHHHHHHHHHHH
Confidence 44444333321 1345666666666655442 112234555555444
No 166
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=54.05 E-value=2e+02 Score=29.61 Aligned_cols=112 Identities=13% Similarity=0.053 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCC--hhhhhhhHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHh
Q 010290 198 HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE--PQDCVAHILPVIVNFSQD---KSWRVRYMVANQLYELCEAV 272 (513)
Q Consensus 198 ~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~~~d---~~~~vr~~~~~~l~~l~~~~ 272 (513)
.+.+.+.|.+...+...+..+...+..++..++..-| ++.+.+.++..+...++. .++.-..++++++..++..+
T Consensus 335 ~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~l 414 (799)
T 1vsy_4 335 EIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFI 414 (799)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHH
Confidence 3556678888878888888888999999998887655 134455566666666666 44555556678888877655
Q ss_pred CCC-ccccchHHHH---HHhcCCCcHHHHHHHHHhHHHHHh
Q 010290 273 GPE-PTRSDVVPAY---VRLLRDNEAEVRIAAAGKVTKICR 309 (513)
Q Consensus 273 ~~~-~~~~~ll~~l---~~~l~d~~~~vr~~a~~~l~~~~~ 309 (513)
-.. .+...+.+.+ +..++-+|+.--..+++.+..+..
T Consensus 415 v~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 415 VMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp TTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred hcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 442 3334444443 344555565555556666666554
No 167
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=53.66 E-value=1.3e+02 Score=27.26 Aligned_cols=13 Identities=15% Similarity=0.480 Sum_probs=5.8
Q ss_pred hhhHHHHHhhhcC
Q 010290 474 QHIVPQVALIKSS 486 (513)
Q Consensus 474 ~~i~~~L~~~~~~ 486 (513)
+.+.|.+..+.++
T Consensus 317 ~~i~~~~~~L~~~ 329 (351)
T 3gvo_A 317 HKIRPHITTLRKY 329 (351)
T ss_dssp HHHGGGHHHHTTS
T ss_pred HHHHHHHHHHhcC
Confidence 3444444444443
No 168
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=53.04 E-value=79 Score=24.62 Aligned_cols=75 Identities=4% Similarity=-0.071 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCC-CchHHHHHHHHhHHHHHHHhhhhhh----HHHHHH-HHHHhhhcc---chhHHHHHHHHHHHhhc
Q 010290 161 KTELRTIYRQLCQD-DMPMVRRSAATNLGKFAATVEAAHL----KSEIMS-IFEELTQDD---QDSVRLLAVEGCGALGK 231 (513)
Q Consensus 161 ~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~-~l~~l~~d~---~~~vr~~a~~~l~~l~~ 231 (513)
-.+.+..+.+-++. +++.+...+...|..+.+.+|.... ...++. .+.+++.+. ...||..+++.+..++.
T Consensus 51 pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 51 PKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 34556666666663 5777777788888888888876322 223443 244455432 23688888888887777
Q ss_pred cCCh
Q 010290 232 LLEP 235 (513)
Q Consensus 232 ~~~~ 235 (513)
.++.
T Consensus 131 ~F~~ 134 (152)
T 3rru_A 131 GFPG 134 (152)
T ss_dssp CCSS
T ss_pred HhCC
Confidence 6654
No 169
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=51.49 E-value=1.2e+02 Score=26.12 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=10.4
Q ss_pred HhcCchhHHHHHHHHHHHHHHH
Q 010290 444 WLKDKVYSIRDAAANNVKRLAE 465 (513)
Q Consensus 444 ~l~d~~~~VR~~a~~~l~~l~~ 465 (513)
+..++++.+-+..+++.-++.+
T Consensus 203 l~~~ps~RLLKhiircYlRLsd 224 (268)
T 2fv2_A 203 LSKEPSARLLKHVVRCYLRLSD 224 (268)
T ss_dssp TTTSCCHHHHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHHhc
Confidence 3345555554444544444443
No 170
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=50.22 E-value=1.3e+02 Score=29.83 Aligned_cols=35 Identities=11% Similarity=-0.080 Sum_probs=19.0
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhh
Q 010290 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392 (513)
Q Consensus 358 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~ 392 (513)
.-++++..+++++...+...++..+..+...++..
T Consensus 317 ~~l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~ 351 (596)
T 4f52_E 317 FNMGHIEVFLQRTEESVISKGLELLENSLLRIEDN 351 (596)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHHcCCchHHHHhHHHHHHHHHHhccCc
Confidence 33445555566666555555555555555555443
No 171
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=47.05 E-value=1.6e+02 Score=26.55 Aligned_cols=15 Identities=0% Similarity=-0.144 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhhcCh
Q 010290 105 KAVESLCRIGSQMRE 119 (513)
Q Consensus 105 ~a~~~l~~l~~~~~~ 119 (513)
.+...+..+.+..++
T Consensus 36 ~gsR~lQ~~l~~~~~ 50 (351)
T 3gvo_A 36 HGSRFIQQKLERATP 50 (351)
T ss_dssp HHHHHHHHHHHHCCH
T ss_pred cchHHHHHHHhhCCH
Confidence 344444444444443
No 172
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=43.96 E-value=1e+02 Score=23.23 Aligned_cols=58 Identities=9% Similarity=0.030 Sum_probs=38.5
Q ss_pred HHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q 010290 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 428 (513)
Q Consensus 364 ~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~ 428 (513)
+.-|+.....+...+..++...-. .+.++..+.+.+.......|...+..+..+....
T Consensus 13 L~~L~~s~~sI~~~s~w~l~~~~~-------a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns 70 (135)
T 4fu3_A 13 LSELSNSQQSVQTLSLWLIHHRKH-------AGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNS 70 (135)
T ss_dssp HHHCCSSTTHHHHHHHHHHHTGGG-------HHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 344566667777777777765322 2456666666555555567888898998888765
No 173
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=41.55 E-value=1.9e+02 Score=25.78 Aligned_cols=25 Identities=8% Similarity=0.193 Sum_probs=10.8
Q ss_pred hhhHHHHHhhhcCcc-hHHHHHHHHH
Q 010290 474 QHIVPQVALIKSSRN-LVLNSVLSLL 498 (513)
Q Consensus 474 ~~i~~~L~~~~~~~~-~~~r~~~~~~ 498 (513)
.+++..+.+...+.+ ++++.++..+
T Consensus 285 nyViq~~l~~~~~~~~~~~~~l~~~l 310 (333)
T 3bwt_A 285 NYVLQTALDISHKQNDYLYKRLSEIV 310 (333)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCccHHHHHHHHHHH
Confidence 445555554444432 3444444333
No 174
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=35.61 E-value=3e+02 Score=26.20 Aligned_cols=155 Identities=12% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCC--chHHHHHHH
Q 010290 107 VESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDD--MPMVRRSAA 184 (513)
Q Consensus 107 ~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~--~~~vr~~a~ 184 (513)
+..+..+++.-.++.+...++..+.++.+.........+...+. ...+++.+..+...+ ++++....-
T Consensus 273 ~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~----------~~~~l~~l~~L~~rk~~Dedl~edl~ 342 (480)
T 1ho8_A 273 FLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLL----------LGNALPTVQSLSERKYSDEELRQDIS 342 (480)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHH----------HHCHHHHHHHHHSSCCSSHHHHHHHH
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHH----------HccchHHHHHHhhCCCCcHHHHHHHH
Q ss_pred HhHHHHHHHhhh------------------------hhhHHH-----------HHHHHHHhhh----------ccchhHH
Q 010290 185 TNLGKFAATVEA------------------------AHLKSE-----------IMSIFEELTQ----------DDQDSVR 219 (513)
Q Consensus 185 ~~l~~l~~~~~~------------------------~~~~~~-----------l~~~l~~l~~----------d~~~~vr 219 (513)
.....+.+.+.. +.|+.+ ++..|.+++. +.++.+-
T Consensus 343 ~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~l 422 (480)
T 1ho8_A 343 NLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIII 422 (480)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceE
Q ss_pred HHHHHHHHHhhccCChhhhhhh---HHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 010290 220 LLAVEGCGALGKLLEPQDCVAH---ILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (513)
Q Consensus 220 ~~a~~~l~~l~~~~~~~~~~~~---l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 271 (513)
..|+.=++.++.++|.....-. .-..+.++++++++.||..++.++..+...
T Consensus 423 aVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 423 QVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred EeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
No 175
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=34.12 E-value=1.1e+02 Score=20.99 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCch--hHHHHHHHHHHHHHHHHh-ChhhHhhhhHHHHHhhhcCcch--HHH----HHHHHHHH
Q 010290 436 KLGALCMQWLKDKV--YSIRDAAANNVKRLAEEF-GPDWAMQHIVPQVALIKSSRNL--VLN----SVLSLLKN 500 (513)
Q Consensus 436 ~~~~~l~~~l~d~~--~~VR~~a~~~l~~l~~~~-~~~~~~~~i~~~L~~~~~~~~~--~~r----~~~~~~~~ 500 (513)
+++..+.+..+|.. .++|.+|-++...|...- .+..-....+..|.+..+|||. .-| ++++.++.
T Consensus 14 ~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~~~~~vRAA~aIs~LDeISnDPNmP~h~RT~IW~ivS~LEt 87 (89)
T 2qsb_A 14 EVMYLLDELSQDITVPKNVRKVAQDSKAKLSQENESLDLRCATVLSMLDEMANDPNVPAHGRTDLYTIISKLEA 87 (89)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhc
Confidence 35556666777765 389999988888875532 2222246788888889999862 222 55565554
No 176
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=31.69 E-value=5.5e+02 Score=28.18 Aligned_cols=148 Identities=7% Similarity=0.082 Sum_probs=83.5
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHH-H
Q 010290 279 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI-E 357 (513)
Q Consensus 279 ~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~-~ 357 (513)
..++.....++...++.|+.-+......+...++ +...++++..+.....+.+..--.+++..+..++...+..... .
T Consensus 399 ~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd-~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~a 477 (1323)
T 3s4w_B 399 PSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFD-TYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLNA 477 (1323)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHTH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHHH
Confidence 3556666677888999999888887777777664 3445677777766554454444555788888777543322111 1
Q ss_pred hHHHHHHHhcCCCC-hHHHHHHHHHHHHhhhhh---hhhhhhhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q 010290 358 QLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVI---GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 428 (513)
Q Consensus 358 ~l~~~l~~~l~d~~-~~vr~~a~~~l~~i~~~~---~~~~~~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~ 428 (513)
.++.-+++.+.+=. ..+|.. ...|..++-.- |...+.+.+.-.+.+.+.+++...+...+-....+++.+
T Consensus 478 ~~l~giLD~l~~l~~~QiRkl-f~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~v~~~ 551 (1323)
T 3s4w_B 478 AFVKGILDYLENMSPQQIRKI-FCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTMAGIM 551 (1323)
T ss_dssp HHHHGGGGGGGGCCHHHHHHH-HHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCCCHHHHHHH-HHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHHHHHH
Confidence 22333334444433 455543 55555554221 122344566666666677777666654444444444443
No 177
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=27.14 E-value=2e+02 Score=21.51 Aligned_cols=111 Identities=13% Similarity=-0.007 Sum_probs=58.7
Q ss_pred hhhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHHHHH--hChhh
Q 010290 395 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ-WLKDKVYSIRDAAANNVKRLAEE--FGPDW 471 (513)
Q Consensus 395 ~~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~-~l~d~~~~VR~~a~~~l~~l~~~--~~~~~ 471 (513)
...+.+.+.+++.+.+. ..|+.++..+ +...|...++...+. .+.-.....|...++.+..+... +..+.
T Consensus 7 ~kki~~ll~EY~~~~D~---~Ea~~cl~eL----~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 7 VKEIDMLLKEYLLSGDI---SEAEHCLKEL----EVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHHHHCCH---HHHHHHHHHH----TCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHHcCCCH---HHHHHHHHHh----CCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 34555566666555443 3455555444 223444444444444 34333457788888888887642 12221
Q ss_pred H---hhhhHHHHHhhhcC-c---chHHHHHHHHH--HHhcccceeehhcc
Q 010290 472 A---MQHIVPQVALIKSS-R---NLVLNSVLSLL--KNAGIDAVFYMETR 512 (513)
Q Consensus 472 ~---~~~i~~~L~~~~~~-~---~~~~r~~~~~~--~~i~~~~~~~~~~~ 512 (513)
+ ...++..+-++.-| | +|+-+.+..++ +.+..+++..+|||
T Consensus 80 ~~~Gf~~v~~~l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~~~~~~~~p~~ 129 (129)
T 2nsz_A 80 MKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSR 129 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTCTTC
T ss_pred HHHHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHhhCCCC
Confidence 1 24555555554433 2 45555444444 45667777788877
No 178
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=24.40 E-value=2.2e+02 Score=21.18 Aligned_cols=59 Identities=7% Similarity=-0.104 Sum_probs=33.5
Q ss_pred HHHhcCCCcHHHHHHHHHhHHHHHhhhChHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhh
Q 010290 285 YVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL 350 (513)
Q Consensus 285 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 350 (513)
.++-++.+...+...+..++...- ..+.++..+...+....+..|...+..+..++...
T Consensus 13 ~L~~L~~s~~sI~~~s~w~l~h~~-------~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns 71 (132)
T 4flb_A 13 KFQSVTNTMESIQGLSSWCIENKK-------HHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNC 71 (132)
T ss_dssp HHHHCCSSHHHHHHHHHHHHHTGG-------GHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCcccHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Confidence 344455555666655555544321 12444555545555556677778888877777654
No 179
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=24.23 E-value=2.4e+02 Score=21.56 Aligned_cols=89 Identities=6% Similarity=0.016 Sum_probs=55.6
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChh------hHHHHHHHHHHHH---hcCchhHHHHHHHHHHHHHHHH
Q 010290 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG------FFDDKLGALCMQW---LKDKVYSIRDAAANNVKRLAEE 466 (513)
Q Consensus 396 ~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~------~~~~~~~~~l~~~---l~d~~~~VR~~a~~~l~~l~~~ 466 (513)
+.++..+...+.......|..++..+..+++..+.. .|...+.+.+... .....+..|....+.+.-+-+.
T Consensus 41 ~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~~~~~~r~kl~rLl~iW~~r 120 (145)
T 3d9j_A 41 KHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN 120 (145)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCC
Confidence 566667766666667788899999999999887652 3444443333332 2233478888888888777642
Q ss_pred hChhhHhhhhHHHHHhhhcCc
Q 010290 467 FGPDWAMQHIVPQVALIKSSR 487 (513)
Q Consensus 467 ~~~~~~~~~i~~~L~~~~~~~ 487 (513)
..+...++..+.+.++.+
T Consensus 121 ---~vF~~~~l~~l~~~l~~~ 138 (145)
T 3d9j_A 121 ---NVFKSEIIQPLLDMAAAL 138 (145)
T ss_dssp ---TSSCHHHHHHHHHHHHHC
T ss_pred ---CCCCHHHHHHHHHHhcCc
Confidence 223345566666555443
No 180
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=23.47 E-value=4.2e+02 Score=24.01 Aligned_cols=11 Identities=9% Similarity=0.030 Sum_probs=5.4
Q ss_pred hhhHHHHHhhh
Q 010290 474 QHIVPQVALIK 484 (513)
Q Consensus 474 ~~i~~~L~~~~ 484 (513)
+.+.|.+..+.
T Consensus 334 ~~i~p~l~~L~ 344 (369)
T 3k49_A 334 IAIRAYLDKLN 344 (369)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44555555543
No 181
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=23.08 E-value=7.8e+02 Score=27.06 Aligned_cols=104 Identities=10% Similarity=0.024 Sum_probs=64.1
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhChhhH-h
Q 010290 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWA-M 473 (513)
Q Consensus 396 ~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~~~-~ 473 (513)
..++.....++.+.+..+|..+......+...++ ..+.+.++..++.... ....+| ..|+.++..++........ .
T Consensus 399 ~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd-~~~qqeVl~~Lv~hi~sg~~~eV-d~ALdvL~~L~~~~~~~l~~~ 476 (1323)
T 3s4w_B 399 PSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFD-TYCQQEVVGALVTHVCSGTEAEV-DTALDVLLELIVLNASAMRLN 476 (1323)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHCHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHhhhcCCCcHHH-HHHHHHHHHHHhcCHHHHhHH
Confidence 4555566667778888888888888877777774 4445667777766544 444555 4488888888875433222 1
Q ss_pred hhhHHHHHhhhcCcc-hHHHHHHHHHHHh
Q 010290 474 QHIVPQVALIKSSRN-LVLNSVLSLLKNA 501 (513)
Q Consensus 474 ~~i~~~L~~~~~~~~-~~~r~~~~~~~~i 501 (513)
..++..+.+.+.+-+ .+.|.+..++..+
T Consensus 477 a~~l~giLD~l~~l~~~QiRklf~iL~~l 505 (1323)
T 3s4w_B 477 AAFVKGILDYLENMSPQQIRKIFCILSTL 505 (1323)
T ss_dssp HHHHHGGGGGGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 345555556555543 4555555444433
Done!