BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010291
(513 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 102/196 (52%), Gaps = 1/196 (0%)
Query: 3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 62
GG+ LV+LL TD++VQ+ AA AL +A DE IV+ + L+ +L S DS +
Sbjct: 44 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQ 103
Query: 63 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 122
EA + N+ K ++ AG ++ ++ LL+S SE Q+EAA L A+ +
Sbjct: 104 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 163
Query: 123 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ-AGIAHNGGLVPLLKLLDS 181
IV G V L+++L S D ++++ +A AL +A + I GG+ L KLL S
Sbjct: 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS 223
Query: 182 KNGSLQHNAAFALYGL 197
+ +Q A AL +
Sbjct: 224 TDSEVQKEAQRALENI 239
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 38/234 (16%)
Query: 89 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREM 148
++ ++ LL+S SE+Q+EAA L + A+ + IV G V L+++L S D ++++
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKE 63
Query: 149 SAFALGRLAQ--DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN-VA 205
+A AL +A D +A I GG+ L+KLL S + +Q AA AL +A D +
Sbjct: 64 AARALANIASGPDEAIKA-IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 122
Query: 206 DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVA 265
+ GGV+ L+ L+ + VQ+ A
Sbjct: 123 AIVDAGGVE---------------------------------VLVKLLTSTDSEVQKEAA 149
Query: 266 LALAHLCS-PDDQRTIFIDXXXXXXXXXXXXSTNPKQQLDGAVALFKLANKATT 318
ALA++ S PD+ +D ST+ + Q + A AL +A+ T+
Sbjct: 150 RALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTS 203
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 331 PQVYLGDQF---VNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDI 387
P+ L D+ N+ +D V G+ F AH+ L A S F AMF+ E +
Sbjct: 157 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRV 216
Query: 388 EIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLEN 447
EI ++ EVF+ MM FIYTG +A DLL AAD+Y LE LK +CE + ++S+EN
Sbjct: 217 EINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVEN 276
Query: 448 VSSMYELSEAFHAISLRHTCILYIMEH 474
+ + L++ A L+ + +I H
Sbjct: 277 AAEILILADLHSADQLKTQAVDFINYH 303
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 3/138 (2%)
Query: 330 TPQVYLGDQF---VNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARD 386
P+ L D+ N+ +D V G+ F AH+ L A S F AMF+ E
Sbjct: 7 VPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNR 66
Query: 387 IEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLE 446
+EI ++ EVF+ MM FIYTG +A DLL AAD+Y LE LK +CE + ++S+E
Sbjct: 67 VEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVE 126
Query: 447 NVSSMYELSEAFHAISLR 464
N + + L++ A L+
Sbjct: 127 NAAEILILADLHSADQLK 144
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 98/196 (50%), Gaps = 1/196 (0%)
Query: 3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 62
G +P LV+LL + ++ + A AL +A +E +++ ALP L+ +L S + I
Sbjct: 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 63 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 122
EA+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173
Query: 123 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA-GIAHNGGLVPLLKLLDS 181
++ GA+ L+++L SP+ Q+ + + +AL +A + Q + G L L +L
Sbjct: 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 233
Query: 182 KNGSLQHNAAFALYGL 197
+N +Q A AL L
Sbjct: 234 ENEKIQKEAQEALEKL 249
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 105/215 (48%), Gaps = 2/215 (0%)
Query: 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
+P + + L D + Q +A + +E +++ ALP L+ +L S + I E
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 65 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
A+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-LLKLLDSKN 183
++ GA+ L+++L SP+ Q+ + + +AL +A + Q + G +P L++LL S N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 193
Query: 184 GSLQHNAAFALYGLADNEDNVADFIR-VGGVQKLQ 217
+ A +AL +A + ++ G ++KL+
Sbjct: 194 EQILQEALWALSNIASGGNEQKQAVKEAGALEKLE 228
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Query: 331 PQVYLGDQ---FVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDI 387
P+ L D+ N+ +D V G+ F AH+ L A S F A F+ E +
Sbjct: 17 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKKNRV 76
Query: 388 EIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLEN 447
EI ++ EVF+ FIYTG A DLL AAD+Y LE LK CE + ++S+EN
Sbjct: 77 EINDVEPEVFKEXXCFIYTGKAPNLDKXADDLLAAADKYALERLKVXCEDALCSNLSVEN 136
Query: 448 VSSMYELSEAFHAISLRHTCILYIMEH 474
+ + L++ A L+ + +I H
Sbjct: 137 AAEILILADLHSADQLKTQAVDFINYH 163
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 1/191 (0%)
Query: 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
+P +V+ L D + ++A L +A +E +++ ALP L+ +L S + I E
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 65 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
A+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK-N 183
++ GA+ L+++L SP+ Q+ + + +AL +A + Q G P L+ L S N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPN 193
Query: 184 GSLQHNAAFAL 194
+Q A AL
Sbjct: 194 EKIQKEAQEAL 204
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 62
G +P LV+LL + ++ + A AL +A +E +++ ALP L+ +L S + I
Sbjct: 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 63 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 122
EA+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++ K
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173
Query: 123 VHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRL 156
+ + GA P +E LQ SP+ ++++ + AL ++
Sbjct: 174 QAVKEAGA-EPALEQLQSSPNEKIQKEAQEALEKI 207
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 1/194 (0%)
Query: 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
+P +V+ L D + ++A L +A +E +++ ALP L+ +L S + I E
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 65 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
A+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA-GIAHNGGLVPLLKLLDSKN 183
++ GA+ L+++L SP+ Q+ + + +AL +A + Q + G L L +L +N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193
Query: 184 GSLQHNAAFALYGL 197
+Q A AL L
Sbjct: 194 EKIQKEAQEALEKL 207
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 1/138 (0%)
Query: 3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 62
G +P LV+LL + ++ + A AL +A +E +++ ALP L+ +L S + I
Sbjct: 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 63 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 122
EA+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++ K
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173
Query: 123 VHIVQRGAVRPLIEMLQS 140
+ + GA+ L E LQS
Sbjct: 174 QAVKEAGALEKL-EQLQS 190
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 1/194 (0%)
Query: 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
+P + + L D + Q +A + +E +++ ALP L+ +L S + I E
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 65 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
A+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA-GIAHNGGLVPLLKLLDSKN 183
++ GA+ L+++L SP+ Q+ + + +AL +A + Q + G L L +L +N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193
Query: 184 GSLQHNAAFALYGL 197
+Q A AL L
Sbjct: 194 EKIQKEAQEALEKL 207
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 1/138 (0%)
Query: 3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 62
G +P LV+LL + ++ + A AL +A +E +++ ALP L+ +L S + I
Sbjct: 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 63 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 122
EA+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++ K
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173
Query: 123 VHIVQRGAVRPLIEMLQS 140
+ + GA+ L E LQS
Sbjct: 174 QAVKEAGALEKL-EQLQS 190
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
+P LV LL D +V + A+ L +E +V+ +P L+ +L + + I
Sbjct: 253 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 312
Query: 65 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
A+ IGN+V + ++V+ AGAL LL++ + Q+EA + A D
Sbjct: 313 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 372
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKL 178
+V G V L+ +L D + ++ +A+A+ G + Q ++ + H G + PL+ L
Sbjct: 373 VVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNL 428
Query: 179 LDSKN 183
L +K+
Sbjct: 429 LSAKD 433
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 21 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 79
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 95 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154
Query: 80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 139
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 155 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLA 214
Query: 140 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 188
PD +S A G L + + N P L++LL + +
Sbjct: 215 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 269
Query: 189 NAAFALYGLADNEDNVADFIRVGGV 213
++ +A+ L D + + + GV
Sbjct: 270 DSCWAISYLTDGPNERIEMVVKKGV 294
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 3 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 178
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 97
+AV +GN+ + + V+ GA+ P++ LL+
Sbjct: 179 SEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLA 214
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
+P LV LL D +V + A+ L +E +V+ +P L+ +L + + I
Sbjct: 218 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 277
Query: 65 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
A+ IGN+V + ++V+ AGAL LL++ + Q+EA + A D
Sbjct: 278 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 337
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKL 178
+V G V L+ +L D + ++ +A+A+ G + Q ++ + H G + PL+ L
Sbjct: 338 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNL 393
Query: 179 LDSKN 183
L +K+
Sbjct: 394 LSAKD 398
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Query: 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
+G +P LV+LL T+ + A A+ + DE ++++ AL +L + + I
Sbjct: 257 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 316
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-D 120
EA + N+ + ++V+ G + ++G+LS ++Q+EAA + + + + +
Sbjct: 317 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE 376
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158
V++V G + PL+ +L + D ++ ++ A+ + Q
Sbjct: 377 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 414
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 21 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 79
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 60 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 119
Query: 80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 139
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 120 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 179
Query: 140 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 188
PD +S A G L + + N P L++LL + +
Sbjct: 180 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 234
Query: 189 NAAFALYGLADNEDNVADFIRVGGV 213
++ +A+ L D + + + GV
Sbjct: 235 DSCWAISYLTDGPNERIEMVVKKGV 259
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 3 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 84 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 143
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 97
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 144 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 179
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
+P LV LL D +V + A+ L +E +V+ +P L+ +L + + I
Sbjct: 234 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 293
Query: 65 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
A+ IGN+V + ++V+ AGAL LL++ + Q+EA + A D
Sbjct: 294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKL 178
+V G V L+ +L D + ++ +A+A+ G + Q ++ + H G + PL+ L
Sbjct: 354 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNL 409
Query: 179 LDSKN 183
L +K+
Sbjct: 410 LSAKD 414
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Query: 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
+G +P LV+LL T+ + A A+ + DE ++++ AL +L + + I
Sbjct: 273 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 332
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-D 120
EA + N+ + ++V+ G + ++G+LS ++Q+EAA + + + + +
Sbjct: 333 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE 392
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158
V++V G + PL+ +L + D ++ ++ A+ + Q
Sbjct: 393 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/275 (19%), Positives = 110/275 (40%), Gaps = 27/275 (9%)
Query: 21 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 79
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 76 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135
Query: 80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 139
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
Query: 140 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 188
PD +S A G L + + N P L++LL + +
Sbjct: 196 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 250
Query: 189 NAAFALYGLADNEDN----------VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE 238
++ +A+ L D + V +++ G +L ++A + V T ++ +
Sbjct: 251 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ 310
Query: 239 EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 273
+ I L L+ + +Q+ ++++ +
Sbjct: 311 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 345
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 3 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 159
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 97
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 160 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 10/189 (5%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
+E +P LV LL D +V + A+ L +E +V+ +P L+ +L + +
Sbjct: 206 VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP 265
Query: 61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
I A+ IGN+V + ++V+ AGAL LL++ + Q+EA + A D
Sbjct: 266 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 325
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVP 174
+V G V L+ +L D + ++ +A+A+ G + Q ++ + H G + P
Sbjct: 326 QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEP 381
Query: 175 LLKLLDSKN 183
L+ LL +K+
Sbjct: 382 LMNLLSAKD 390
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Query: 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
+G +P LV+LL T+ + A A+ + DE ++++ AL +L + + I
Sbjct: 249 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 308
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-D 120
EA + N+ + ++V+ G + ++G+LS ++Q+EAA + + + + +
Sbjct: 309 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE 368
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158
V++V G + PL+ +L + D ++ ++ A+ + Q
Sbjct: 369 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 406
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 21 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 79
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 52 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 111
Query: 80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 139
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 112 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 171
Query: 140 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 188
PD +S A G L + + N P L++LL + +
Sbjct: 172 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 226
Query: 189 NAAFALYGLADNEDNVADFIRVGGV 213
++ +A+ L D + + + GV
Sbjct: 227 DSCWAISYLTDGPNERIEMVVKKGV 251
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 3 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 76 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 135
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 97
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 136 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 171
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
+P LV LL D +V + A+ L +E +V+ +P L+ +L + + I
Sbjct: 184 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 243
Query: 65 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
A+ IGN+V + ++V+ AGAL LL++ + Q+EA + A D
Sbjct: 244 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 303
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKL 178
+V G V L+ +L D + ++ +A+A+ G + Q ++ + H G + PL+ L
Sbjct: 304 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNL 359
Query: 179 LDSKN 183
L +K+
Sbjct: 360 LSAKD 364
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Query: 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
+G +P LV+LL T+ + A A+ + DE ++++ AL +L + + I
Sbjct: 223 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 282
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-D 120
EA + N+ + ++V+ G + ++G+LS ++Q+EAA + + + + +
Sbjct: 283 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE 342
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158
V++V G + PL+ +L + D ++ ++ A+ + Q
Sbjct: 343 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 380
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 21 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 79
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 26 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 85
Query: 80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 139
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 86 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
Query: 140 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 188
PD +S A G L + + N P L++LL + +
Sbjct: 146 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 200
Query: 189 NAAFALYGLADNEDNVADFIRVGGV 213
++ +A+ L D + + + GV
Sbjct: 201 DSCWAISYLTDGPNERIEMVVKKGV 225
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 3 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 50 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 109
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 97
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 110 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
+P LV LL D +V + A+ L +E +V+ +P L+ +L + + I
Sbjct: 220 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 279
Query: 65 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
A+ IGN+V + ++V+ AGAL LL++ + Q+EA + A D
Sbjct: 280 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 339
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKL 178
+V G V L+ +L D + ++ +A+A+ G + Q ++ + H G + PL+ L
Sbjct: 340 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNL 395
Query: 179 LDSKN 183
L +K+
Sbjct: 396 LSAKD 400
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Query: 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
+G +P LV+LL T+ + A A+ + DE ++++ AL +L + + I
Sbjct: 259 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 318
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-D 120
EA + N+ + ++V+ G + ++G+LS ++Q+EAA + + + + +
Sbjct: 319 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE 378
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158
V++V G + PL+ +L + D ++ ++ A+ + Q
Sbjct: 379 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 416
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 21 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 79
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 62 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 121
Query: 80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 139
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 122 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 181
Query: 140 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 188
PD +S A G L + + N P L++LL + +
Sbjct: 182 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 236
Query: 189 NAAFALYGLADNEDNVADFIRVGGV 213
++ +A+ L D + + + GV
Sbjct: 237 DSCWAISYLTDGPNERIEMVVKKGV 261
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 3 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 86 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 145
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 97
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 146 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 181
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 10/189 (5%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
+E +P LV LL D +V + A+ L +E +V+ +P L+ +L + +
Sbjct: 180 VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP 239
Query: 61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
I A+ IGN+V + ++V+ AGAL LL++ + Q+EA + A D
Sbjct: 240 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 299
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVP 174
+V G V L+ +L D + ++ +A+A+ G + Q ++ + H G + P
Sbjct: 300 QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEP 355
Query: 175 LLKLLDSKN 183
L+ LL +K+
Sbjct: 356 LMNLLSAKD 364
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Query: 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
+G +P LV+LL T+ + A A+ + DE ++++ AL +L + + I
Sbjct: 223 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 282
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-D 120
EA + N+ + ++V+ G + ++G+LS ++Q+EAA + + + + +
Sbjct: 283 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE 342
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158
V++V G + PL+ +L + D ++ ++ A+ + Q
Sbjct: 343 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 380
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 21 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 79
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 26 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 85
Query: 80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 139
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 86 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
Query: 140 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 188
PD +S A G L + + N P L++LL + +
Sbjct: 146 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 200
Query: 189 NAAFALYGLADNEDNVADFIRVGGV 213
++ +A+ L D + + + GV
Sbjct: 201 DSCWAISYLTDGPNERIEMVVKKGV 225
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 3 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 50 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 109
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 97
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 110 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
+P LV LL D +V + A+ L +E +V+ +P L+ +L + + I
Sbjct: 234 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 293
Query: 65 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
A+ IGN+V + ++V+ AGAL LL++ + Q+EA + A D
Sbjct: 294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKL 178
+V G V L+ +L D + ++ +A+A+ G + Q ++ + H G + PL+ L
Sbjct: 354 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNL 409
Query: 179 LDSKN 183
L +K+
Sbjct: 410 LSAKD 414
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Query: 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
+G +P LV+LL T+ + A A+ + DE ++++ AL +L + + I
Sbjct: 273 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 332
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-D 120
EA + N+ + ++V+ G + ++G+LS ++Q+EAA + + + + +
Sbjct: 333 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE 392
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158
V++V G + PL+ +L + D ++ ++ A+ + Q
Sbjct: 393 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/275 (19%), Positives = 110/275 (40%), Gaps = 27/275 (9%)
Query: 21 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 79
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 76 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135
Query: 80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 139
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
Query: 140 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 188
PD +S A G L + + N P L++LL + +
Sbjct: 196 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 250
Query: 189 NAAFALYGLADNEDN----------VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE 238
++ +A+ L D + V +++ G +L ++A + V T ++ +
Sbjct: 251 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ 310
Query: 239 EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 273
+ I L L+ + +Q+ ++++ +
Sbjct: 311 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 345
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 3 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 159
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 97
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 160 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
+P LV LL D +V + A+ L +E +V+ +P L+ +L + + I
Sbjct: 183 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 242
Query: 65 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
A+ IGN+V + ++V+ AGAL LL++ + Q+EA + A D
Sbjct: 243 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 302
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKL 178
+V G V L+ +L D + ++ +A+A+ G + Q ++ + H G + PL+ L
Sbjct: 303 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNL 358
Query: 179 LDSKN 183
L +K+
Sbjct: 359 LSAKD 363
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Query: 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
+G +P LV+LL T+ + A A+ + DE ++++ AL +L + + I
Sbjct: 222 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 281
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-D 120
EA + N+ + ++V+ G + ++G+LS ++Q+EAA + + + + +
Sbjct: 282 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE 341
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158
V++V G + PL+ +L + D ++ ++ A+ + Q
Sbjct: 342 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 379
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 21 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 79
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 25 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 84
Query: 80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 139
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 85 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 144
Query: 140 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 188
PD +S A G L + + N P L++LL + +
Sbjct: 145 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 199
Query: 189 NAAFALYGLADNEDNVADFIRVGGV 213
++ +A+ L D + + + GV
Sbjct: 200 DSCWAISYLTDGPNERIEMVVKKGV 224
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 3 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 49 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 108
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 97
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 109 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 144
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 10/189 (5%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
+E +P LV LL D +V + A+ L +E +V+ +P L+ +L + +
Sbjct: 179 VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP 238
Query: 61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
I A+ IGN+V + ++V+ AGAL LL++ + Q+EA + A D
Sbjct: 239 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 298
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVP 174
+V G V L+ +L D + ++ +A+A+ G + Q ++ + H G + P
Sbjct: 299 QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEP 354
Query: 175 LLKLLDSKN 183
L+ LL +K+
Sbjct: 355 LMNLLSAKD 363
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Query: 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
+G +P LV+LL T+ + A A+ + DE ++++ AL +L + + I
Sbjct: 222 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 281
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-D 120
EA + N+ + ++V+ G + ++G+LS ++Q+EAA + + + + +
Sbjct: 282 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE 341
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158
V++V G + PL+ +L + D ++ ++ A+ + Q
Sbjct: 342 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 379
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 21 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 79
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 25 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 84
Query: 80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 139
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 85 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 144
Query: 140 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 188
PD +S A G L + + N P L++LL + +
Sbjct: 145 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 199
Query: 189 NAAFALYGLADNEDNVADFIRVGGV 213
++ +A+ L D + + + GV
Sbjct: 200 DSCWAISYLTDGPNERIEMVVKKGV 224
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 3 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 49 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 108
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 97
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 109 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 144
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
+P LV LL D +V + A+ L +E +V+ +P L+ +L + + I
Sbjct: 234 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 293
Query: 65 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
A+ IGN+V + ++V+ AGAL LL++ + Q+EA + A D
Sbjct: 294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKL 178
+V G V L+ +L D + ++ +A+A+ G + Q ++ + H G + PL+ L
Sbjct: 354 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNL 409
Query: 179 LDSKN 183
L +K+
Sbjct: 410 LSAKD 414
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Query: 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
+G +P LV+LL T+ + A A+ + DE ++++ AL +L + + I
Sbjct: 273 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 332
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-D 120
EA + N+ + ++V+ G + ++G+LS ++Q+EAA + + + + +
Sbjct: 333 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE 392
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158
V++V G + PL+ +L + D ++ ++ A+ + Q
Sbjct: 393 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 21 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 79
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 76 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135
Query: 80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 139
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
Query: 140 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 188
PD +S A G L + + N P L++LL + +
Sbjct: 196 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 250
Query: 189 NAAFALYGLADNEDNVADFIRVGGV 213
++ +A+ L D + + + GV
Sbjct: 251 DSCWAISYLTDGPNERIEMVVKKGV 275
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 3 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 159
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 97
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 160 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
+P LV LL D +V + A+ L +E +V+ +P L+ +L + + I
Sbjct: 190 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 249
Query: 65 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
A+ IGN+V + ++V+ AGAL LL++ + Q+EA + A D
Sbjct: 250 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 309
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKL 178
+V G V L+ +L D + ++ +A+A+ G + Q ++ + H G + PL+ L
Sbjct: 310 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNL 365
Query: 179 LDSKN 183
L +K+
Sbjct: 366 LSAKD 370
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Query: 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
+G +P LV+LL T+ + A A+ + DE ++++ AL +L + + I
Sbjct: 229 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 288
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-D 120
EA + N+ + ++V+ G + ++G+LS ++Q+EAA + + + + +
Sbjct: 289 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE 348
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158
V++V G + PL+ +L + D ++ ++ A+ + Q
Sbjct: 349 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 386
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 21 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 79
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 32 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 91
Query: 80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 139
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 92 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 151
Query: 140 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 188
PD +S A G L + + N P L++LL + +
Sbjct: 152 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 206
Query: 189 NAAFALYGLADNEDNVADFIRVGGV 213
++ +A+ L D + + + GV
Sbjct: 207 DSCWAISYLTDGPNERIEMVVKKGV 231
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 3 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 56 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 115
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 97
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 116 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 151
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 10/189 (5%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
+E +P LV LL D +V + A+ L +E +V+ +P L+ +L + +
Sbjct: 175 VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP 234
Query: 61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
I A+ IGN+V + ++V+ AGAL LL++ + Q+EA + A D
Sbjct: 235 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 294
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVP 174
+V G V L+ +L D + ++ +A+A+ G + Q ++ + H G + P
Sbjct: 295 QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEP 350
Query: 175 LLKLLDSKN 183
L+ LL +K+
Sbjct: 351 LMNLLSAKD 359
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Query: 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
+G +P LV+LL T+ + A A+ + DE ++++ AL +L + + I
Sbjct: 218 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 277
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-D 120
EA + N+ + ++V+ G + ++G+LS ++Q+EAA + + + + +
Sbjct: 278 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE 337
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158
V++V G + PL+ +L + D ++ ++ A+ + Q
Sbjct: 338 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 375
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 21 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 79
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 21 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 80
Query: 80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 139
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 81 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 140
Query: 140 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 188
PD +S A G L + + N P L++LL + +
Sbjct: 141 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 195
Query: 189 NAAFALYGLADNEDNVADFIRVGGV 213
++ +A+ L D + + + GV
Sbjct: 196 DSCWAISYLTDGPNERIEMVVKKGV 220
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 3 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 45 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 104
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 97
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 105 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 140
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 10/189 (5%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
+E +P LV LL D +V + A+ L +E +V+ +P L+ +L + +
Sbjct: 180 VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP 239
Query: 61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
I A+ IGN+V + ++V+ AGAL LL++ + Q+EA + A D
Sbjct: 240 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 299
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVP 174
+V G V L+ +L D + ++ +A+A+ G + Q ++ + H G + P
Sbjct: 300 QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEP 355
Query: 175 LLKLLDSKN 183
L+ LL +K+
Sbjct: 356 LMNLLSAKD 364
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Query: 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
+G +P LV+LL T+ + A A+ + DE ++++ AL +L + + I
Sbjct: 223 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 282
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-D 120
EA + N+ + ++V+ G + ++G+LS ++Q+EAA + + + + +
Sbjct: 283 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE 342
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158
V++V G + PL+ +L + D ++ ++ A+ + Q
Sbjct: 343 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 380
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 21 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 79
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 26 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 85
Query: 80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 139
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 86 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
Query: 140 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 188
PD +S A G L + + N P L++LL + +
Sbjct: 146 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 200
Query: 189 NAAFALYGLADNEDNVADFIRVGGV 213
++ +A+ L D + + + GV
Sbjct: 201 DSCWAISYLTDGPNERIEMVVKKGV 225
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 3 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 50 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 109
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 97
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 110 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 10/189 (5%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
+E +P LV LL D +V + A+ L +E +V+ +P L+ +L + +
Sbjct: 175 VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP 234
Query: 61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
I A+ IGN+V + ++V+ AGAL LL++ + Q+EA + A D
Sbjct: 235 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 294
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVP 174
+V G V L+ +L D + ++ +A+A+ G + Q ++ + H G + P
Sbjct: 295 QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEP 350
Query: 175 LLKLLDSKN 183
L+ LL +K+
Sbjct: 351 LMNLLSAKD 359
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Query: 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
+G +P LV+LL T+ + A A+ + DE ++++ AL +L + + I
Sbjct: 218 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 277
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-D 120
EA + N+ + ++V+ G + ++G+LS ++Q+EAA + + + + +
Sbjct: 278 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE 337
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158
V++V G + PL+ +L + D ++ ++ A+ + Q
Sbjct: 338 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 375
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 21 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 79
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 21 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 80
Query: 80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 139
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 81 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 140
Query: 140 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 188
PD +S A G L + + N P L++LL + +
Sbjct: 141 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 195
Query: 189 NAAFALYGLADNEDNVADFIRVGGV 213
++ +A+ L D + + + GV
Sbjct: 196 DSCWAISYLTDGPNERIEMVVKKGV 220
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 3 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 45 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 104
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 97
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 105 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 140
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 10/185 (5%)
Query: 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
+P LV LL D +V A+ L +E +V+ +P L+ +L + + I
Sbjct: 185 LPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTP 244
Query: 65 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124
A+ IGN+V + + V+ AGAL LL++ + Q+EA + A D
Sbjct: 245 ALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 304
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKL 178
+V G V L+ +L D + ++ + +A+ G + Q ++ + H G + PL+ L
Sbjct: 305 VVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVY----LVHCGIIEPLMNL 360
Query: 179 LDSKN 183
L +K+
Sbjct: 361 LTAKD 365
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 18/209 (8%)
Query: 21 RAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNI 79
+A A + L+ + + I+ +P + L R++ S I +E+ + N+ +
Sbjct: 27 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQ 86
Query: 80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 139
K V+ GA+ I LL+S + +A LG A S + +++ GAV PL+ +L
Sbjct: 87 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLA 146
Query: 140 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 188
PD MS+ A G L + + N P L++LL + +
Sbjct: 147 VPD-----MSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLA 201
Query: 189 NAAFALYGLADN-EDNVADFIRVGGVQKL 216
+ +A+ L D + + ++ G V +L
Sbjct: 202 DTCWAISYLTDGPNERIGMVVKTGVVPQL 230
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 7/184 (3%)
Query: 3 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 51 GLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 110
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-----SSCCSESQREAALLLGQFAA 116
+AV +GN+ + V+ GA+ P++ LL SS R L
Sbjct: 111 SEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCR 170
Query: 117 TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-L 175
+ + L+ +L D ++ + +A+ L + + G+ G+VP L
Sbjct: 171 NKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQL 230
Query: 176 LKLL 179
+KLL
Sbjct: 231 VKLL 234
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 62
G + LL T +Q+ A + + + Q+V +P L+ +L D
Sbjct: 267 GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQ 326
Query: 63 YEAVGVIGNLVHSSPNIKKEVLA---AGALQPVIGLLSS 98
EAV + N ++S ++++ G ++P++ LL++
Sbjct: 327 KEAVWAVTN--YTSGGTVEQIVYLVHCGIIEPLMNLLTA 363
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 4/180 (2%)
Query: 3 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
G +P V+ L D ++Q AA AL +A EN +++ A+P + +L S +
Sbjct: 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDV 176
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ-REAALLLGQFAATDSD 120
+AV +GN+ SP + VLA GAL P++ L+ S R A L F
Sbjct: 177 REQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQ 236
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-LLKLL 179
R A+ L ++ S D ++ + +AL L+ +++ G+ P L++LL
Sbjct: 237 PSFEQT-RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 295
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 76/148 (51%), Gaps = 3/148 (2%)
Query: 1 MEGGI-PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED 58
+E G+ P LVELL V A + + +D I++ ALP L+ L+ ++
Sbjct: 283 IEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLK 342
Query: 59 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 118
+I EA I N+ + + + V+ AG + P++ LL + + ++EAA + +
Sbjct: 343 KSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGG 402
Query: 119 SDCKV-HIVQRGAVRPLIEMLQSPDVQL 145
S ++ ++V G ++PL ++L PD+++
Sbjct: 403 SHDQIKYLVSEGCIKPLCDLLICPDIRI 430
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 83/178 (46%), Gaps = 3/178 (1%)
Query: 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
+P L L+ D +V A AL L+ ++ ++E P L+ +L ++
Sbjct: 246 LPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIP 305
Query: 65 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES-QREAALLLGQFAATDSDCKV 123
A+ +GN+V + ++ AL ++ LL+ +S ++EA + A + D
Sbjct: 306 ALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQ 365
Query: 124 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGR-LAQDMHNQAG-IAHNGGLVPLLKLL 179
++ G + PL+ +LQ+ + +++ +A+A+ + H+Q + G + PL LL
Sbjct: 366 AVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLL 423
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 4/180 (2%)
Query: 3 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
G +P V+ L D ++Q AA AL +A EN +++ A+P + +L S +
Sbjct: 79 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDV 138
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ-REAALLLGQFAATDSD 120
+AV +GN+ SP + VLA GAL P++ L+ S R A L F
Sbjct: 139 REQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQ 198
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-LLKLL 179
R A+ L ++ S D ++ + +AL L+ +++ G+ P L++LL
Sbjct: 199 PSFEQT-RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 257
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 76/148 (51%), Gaps = 3/148 (2%)
Query: 1 MEGGI-PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED 58
+E G+ P LVELL V A + + +D I++ ALP L+ L+ ++
Sbjct: 245 IEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLK 304
Query: 59 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 118
+I EA I N+ + + + V+ AG + P++ LL + + ++EAA + +
Sbjct: 305 KSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGG 364
Query: 119 SDCKV-HIVQRGAVRPLIEMLQSPDVQL 145
S ++ ++V G ++PL ++L PD+++
Sbjct: 365 SHDQIKYLVSEGCIKPLCDLLICPDIRI 392
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 83/178 (46%), Gaps = 3/178 (1%)
Query: 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
+P L L+ D +V A AL L+ ++ ++E P L+ +L ++
Sbjct: 208 LPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIP 267
Query: 65 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES-QREAALLLGQFAATDSDCKV 123
A+ +GN+V + ++ AL ++ LL+ +S ++EA + A + D
Sbjct: 268 ALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQ 327
Query: 124 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGR-LAQDMHNQAG-IAHNGGLVPLLKLL 179
++ G + PL+ +LQ+ + +++ +A+A+ + H+Q + G + PL LL
Sbjct: 328 AVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLL 385
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 8 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 67
LVELL T VQ A A+ + ND ++ LP L L+L S I EA
Sbjct: 217 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 276
Query: 68 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD---SDCKVH 124
I N+ + + V+ A + P++ LL ++++EA + ++ D +
Sbjct: 277 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRY 336
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFAL 153
+V +G ++PL ++L+ D ++ E++ AL
Sbjct: 337 LVSQGCIKPLCDLLEIADNRIIEVTLDAL 365
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 3 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 43 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 102
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
+A+ +GN+ S + + VL A++P++GL +S R A L
Sbjct: 103 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 162
Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 179
V A+ L +++ S D + + +A+ L+ D +A A +P L++LL
Sbjct: 163 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 221
Query: 180 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 232
++ +Q A A+ + D + GV L ++ + K+ + K
Sbjct: 222 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 279
Query: 233 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 282
++++ I ++ L+ L+ VAE ++ A+++ S QR I
Sbjct: 280 NITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDII 334
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 101/229 (44%), Gaps = 16/229 (6%)
Query: 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 63
+P L +L+ DT+ A A+ L+ E +++ L+ +L E + +
Sbjct: 171 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQT 230
Query: 64 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 123
A+ +GN+V + + V+ AG L + LLSS ++EA + A +++
Sbjct: 231 PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 290
Query: 124 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI----AHNGGLVPLLKLL 179
++ + PL+++L+ + + ++ + +A+ + + I G + PL LL
Sbjct: 291 AVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL 350
Query: 180 DSKNGSLQHNAAFAL-----YGLADNE------DNVADFI-RVGGVQKL 216
+ + + AL G AD E + ADFI + GG++K+
Sbjct: 351 EIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 399
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 8 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 67
LVELL T VQ A A+ + ND ++ LP L L+L S I EA
Sbjct: 217 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 276
Query: 68 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA---TDSDCKVH 124
I N+ + + V+ A + P++ LL ++++EA + ++ D +
Sbjct: 277 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRY 336
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFAL 153
+V +G ++PL ++L+ D ++ E++ AL
Sbjct: 337 LVSQGCIKPLCDLLEIADNRIIEVTLDAL 365
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 3 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 43 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 102
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
+A+ +GN+ S + + VL A++P++GL +S R A L
Sbjct: 103 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 162
Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 179
V A+ L +++ S D + + +A+ L+ D +A A +P L++LL
Sbjct: 163 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 221
Query: 180 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 232
++ +Q A A+ + D + GV L ++ + K+ + K
Sbjct: 222 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 279
Query: 233 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 282
++++ I ++ L+ L+ VAE ++ A+++ S QR I
Sbjct: 280 NITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDII 334
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 101/229 (44%), Gaps = 16/229 (6%)
Query: 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 63
+P L +L+ DT+ A A+ L+ E +++ L+ +L E + +
Sbjct: 171 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQT 230
Query: 64 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 123
A+ +GN+V + + V+ AG L + LLSS ++EA + A +++
Sbjct: 231 PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 290
Query: 124 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI----AHNGGLVPLLKLL 179
++ + PL+++L+ + + ++ + +A+ + + I G + PL LL
Sbjct: 291 AVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL 350
Query: 180 DSKNGSLQHNAAFAL-----YGLADNE------DNVADFI-RVGGVQKL 216
+ + + AL G AD E + ADFI + GG++K+
Sbjct: 351 EIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 399
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 8 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 67
LVELL T VQ A A+ + ND ++ LP L L+L S I EA
Sbjct: 218 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 277
Query: 68 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA---TDSDCKVH 124
I N+ + + V+ A + P++ LL ++++EA + ++ D +
Sbjct: 278 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRY 337
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFAL 153
+V +G ++PL ++L+ D ++ E++ AL
Sbjct: 338 LVSQGCIKPLCDLLEIADNRIIEVTLDAL 366
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 3 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 44 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 103
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
+A+ +GN+ S + + VL A++P++GL +S R A L
Sbjct: 104 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 163
Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 179
V A+ L +++ S D + + +A+ L+ D +A A +P L++LL
Sbjct: 164 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 222
Query: 180 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 232
++ +Q A A+ + D + GV L ++ + K+ + K
Sbjct: 223 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 280
Query: 233 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 282
++++ I ++ L+ L+ VAE ++ A+++ S QR I
Sbjct: 281 NITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDII 335
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 101/229 (44%), Gaps = 16/229 (6%)
Query: 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 63
+P L +L+ DT+ A A+ L+ E +++ L+ +L E + +
Sbjct: 172 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQT 231
Query: 64 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 123
A+ +GN+V + + V+ AG L + LLSS ++EA + A +++
Sbjct: 232 PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 291
Query: 124 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI----AHNGGLVPLLKLL 179
++ + PL+++L+ + + ++ + +A+ + + I G + PL LL
Sbjct: 292 AVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL 351
Query: 180 DSKNGSLQHNAAFAL-----YGLADNE------DNVADFI-RVGGVQKL 216
+ + + AL G AD E + ADFI + GG++K+
Sbjct: 352 EIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 400
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 8 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 67
LVELL T VQ A A+ + ND ++ LP L L+L S I EA
Sbjct: 218 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 277
Query: 68 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA---TDSDCKVH 124
I N+ + + V+ A + P++ LL ++++EA + ++ D +
Sbjct: 278 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRY 337
Query: 125 IVQRGAVRPLIEMLQSPDVQLREMSAFAL 153
+V +G ++PL ++L+ D ++ E++ AL
Sbjct: 338 LVSQGCIKPLCDLLEIADNRIIEVTLDAL 366
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 3 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 44 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 103
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
+A+ +GN+ S + + VL A++P++GL +S R A L
Sbjct: 104 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 163
Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 179
V A+ L +++ S D + + +A+ L+ D +A A +P L++LL
Sbjct: 164 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 222
Query: 180 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 232
++ +Q A A+ + D + GV L ++ + K+ + K
Sbjct: 223 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 280
Query: 233 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 282
++++ I ++ L+ L+ VAE ++ A+++ S QR I
Sbjct: 281 NITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDII 335
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 101/229 (44%), Gaps = 16/229 (6%)
Query: 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 63
+P L +L+ DT+ A A+ L+ E +++ L+ +L E + +
Sbjct: 172 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQT 231
Query: 64 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 123
A+ +GN+V + + V+ AG L + LLSS ++EA + A +++
Sbjct: 232 PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 291
Query: 124 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI----AHNGGLVPLLKLL 179
++ + PL+++L+ + + ++ + +A+ + + I G + PL LL
Sbjct: 292 AVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL 351
Query: 180 DSKNGSLQHNAAFAL-----YGLADNE------DNVADFI-RVGGVQKL 216
+ + + AL G AD E + ADFI + GG++K+
Sbjct: 352 EIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 400
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 354 GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI------PNIRWEVFELMMRFIYTG 407
GR F AHR L A+++ F + G + E + +E+ P + E ++ ++YTG
Sbjct: 62 GREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTG 121
Query: 408 SVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAF 458
+ V+ ++L AD++LL LK C + + + L N +++ L+ +
Sbjct: 122 RIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMY 172
>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1
Length = 457
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA-I 61
GGI LV+LL + VQ+AAAGALR L F++ NK + N + + +LR +A I
Sbjct: 44 GGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEI 103
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 93
+ G++ NL SS + KE L A AL PV+
Sbjct: 104 QKQLTGLLWNL--SSTDELKEELIADAL-PVL 132
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
IP V+ L D K Q A ++ F+++ K Q+ + + L+ +LRS + +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 65 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATD 118
A G + NLV S K E ++ + LL + +E Q++ LL ++TD
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLA---FKNDENKNQIV-ECNALPTLILMLRSE 57
E G+P + LL+ ++ V R+ A L ++ + NQ+ E L T S
Sbjct: 330 EKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSN 389
Query: 58 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLL 111
I A + NL+ S P + K+ ++ L +I L S S EAA LL
Sbjct: 390 SEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL 443
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%)
Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 404
L DV LVEGR F HR L A S F+ +F G EI + E +M F
Sbjct: 35 LCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFA 94
Query: 405 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 435
YT ++ V+ D+L AA + + +C
Sbjct: 95 YTATLTVSTANVGDILSAARLLEIPAVSHVC 125
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%)
Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 404
L DV LVEGR F HR L A S F+ +F G EI + E +M F
Sbjct: 25 LCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFA 84
Query: 405 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 435
YT ++ V+ D+L AA + + +C
Sbjct: 85 YTATLTVSTANVGDILSAARLLEIPAVSHVC 115
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 354 GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI------PNIRWEVFELMMRFIYTG 407
GR F AHR L A+++ F + G + E + +E P + E ++ + YTG
Sbjct: 44 GREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEXRKWSSEPGPEPDTVEAVIEYXYTG 103
Query: 408 SVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAF 458
+ V+ ++L AD++LL LK C + + + L N +++ L+ +
Sbjct: 104 RIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHXY 154
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 3 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 42 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 101
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
+A+ +GN+ S + + VL A++P++GL +S R A L
Sbjct: 102 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 161
Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 179
V A+ L +++ S D + + +A+ L+ D +A A +P L++LL
Sbjct: 162 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 220
Query: 180 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 232
++ +Q A A+ + D + GV L ++ + K+ + K
Sbjct: 221 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 278
Query: 233 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 282
++++ I ++ L+ L+ VAE ++ A+++ S QR I
Sbjct: 279 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII 333
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 101/229 (44%), Gaps = 16/229 (6%)
Query: 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 63
+P L +L+ DT+ A A+ L+ E +++ L+ +L E + +
Sbjct: 170 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQT 229
Query: 64 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 123
A+ +GN+V + + V+ AG L + LLSS ++EA + A +++
Sbjct: 230 PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 289
Query: 124 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI----AHNGGLVPLLKLL 179
++ + PL+++L+ + + ++ + +A+ + + I G + PL LL
Sbjct: 290 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL 349
Query: 180 DSKNGSLQHNAAFAL-----YGLADNE------DNVADFI-RVGGVQKL 216
+ + + AL G AD E + ADFI + GG++K+
Sbjct: 350 EIADNRIIEVTLDALENIIKMGEADKEARGLNINENADFIEKAGGMEKI 398
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 3 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 42 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 101
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
+A+ +GN+ S + + VL A++P++GL +S R A L
Sbjct: 102 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 161
Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 179
V A+ L +++ S D + + +A+ L+ D +A A +P L++LL
Sbjct: 162 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 220
Query: 180 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 232
++ +Q A A+ + D + GV L ++ + K+ + K
Sbjct: 221 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 278
Query: 233 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 282
++++ I ++ L+ L+ VAE ++ A+++ S QR I
Sbjct: 279 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII 333
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 101/229 (44%), Gaps = 16/229 (6%)
Query: 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 63
+P L +L+ DT+ A A+ L+ E +++ L+ +L E + +
Sbjct: 170 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQT 229
Query: 64 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 123
A+ +GN+V + + V+ AG L + LLSS ++EA + A +++
Sbjct: 230 PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 289
Query: 124 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI----AHNGGLVPLLKLL 179
++ + PL+++L+ + + ++ + +A+ + + I G + PL LL
Sbjct: 290 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL 349
Query: 180 DSKNGSLQHNAAFAL-----YGLADNE------DNVADFI-RVGGVQKL 216
+ + + AL G AD E + ADFI + GG++K+
Sbjct: 350 EIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 398
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 3 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 189
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
+A+ +GN+ S + + VL A++P++GL +S R A L
Sbjct: 190 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 249
Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 179
V A+ L +++ S D + + +A+ L+ D +A A +P L++LL
Sbjct: 250 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 308
Query: 180 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 232
++ +Q A A+ + D + GV L ++ + K+ + K
Sbjct: 309 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 366
Query: 233 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 282
++++ I ++ L+ L+ VAE ++ A+++ S QR I
Sbjct: 367 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII 421
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 101/229 (44%), Gaps = 16/229 (6%)
Query: 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 63
+P L +L+ DT+ A A+ L+ E +++ L+ +L E + +
Sbjct: 258 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQT 317
Query: 64 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 123
A+ +GN+V + + V+ AG L + LLSS ++EA + A +++
Sbjct: 318 PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 377
Query: 124 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI----AHNGGLVPLLKLL 179
++ + PL+++L+ + + ++ + +A+ + + I G + PL LL
Sbjct: 378 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL 437
Query: 180 DSKNGSLQHNAAFAL-----YGLADNE------DNVADFI-RVGGVQKL 216
+ + + AL G AD E + ADFI + GG++K+
Sbjct: 438 EIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 486
>pdb|3LTM|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
pdb|3LTM|B Chain B, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 211
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 43/176 (24%)
Query: 19 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 78
V+RAAA AL +I + A+ LI L+ ED+ + A +G +
Sbjct: 35 VRRAAAYAL-----------GKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-- 81
Query: 79 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 138
A++P+I L ++ AA+ LGQ I AV PLI+ L
Sbjct: 82 ---------AVEPLIKALKDEDGWVRQSAAVALGQ-----------IGDERAVEPLIKAL 121
Query: 139 QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 194
+ D +R +AFALG + + + PL+K L ++G ++ +AA AL
Sbjct: 122 KDEDWFVRIAAAFALGEIGDER----------AVEPLIKALKDEDGWVRQSAADAL 167
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 33/155 (21%)
Query: 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
E + PL++ L+ D V+RAAA AL QI + A+ LI L+ ED +
Sbjct: 49 ERAVEPLIKALKDEDAWVRRAAADAL-----------GQIGDERAVEPLIKALKDEDGWV 97
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
A +G + A++P+I L + AA LG+
Sbjct: 98 RQSAAVALGQIGDER-----------AVEPLIKALKDEDWFVRIAAAFALGE-------- 138
Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 156
I AV PLI+ L+ D +R+ +A ALG +
Sbjct: 139 ---IGDERAVEPLIKALKDEDGWVRQSAADALGEI 170
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 21/113 (18%)
Query: 88 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLRE 147
A++P+I L + +R AA LGQ I AV PLI+ L+ D +R+
Sbjct: 51 AVEPLIKALKDEDAWVRRAAADALGQ-----------IGDERAVEPLIKALKDEDGWVRQ 99
Query: 148 MSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 200
+A ALG++ + + PL+K L ++ ++ AAFAL + D
Sbjct: 100 SAAVALGQIGDER----------AVEPLIKALKDEDWFVRIAAAFALGEIGDE 142
>pdb|3LTJ|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 201
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 43/176 (24%)
Query: 19 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 78
V+RAAA AL +I + A+ LI L+ ED+ + A +G +
Sbjct: 30 VRRAAAYAL-----------GKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-- 76
Query: 79 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 138
A++P+I L ++ AA+ LGQ I AV PLI+ L
Sbjct: 77 ---------AVEPLIKALKDEDGWVRQSAAVALGQ-----------IGDERAVEPLIKAL 116
Query: 139 QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 194
+ D +R +AFALG I + PL+K L ++G ++ +AA AL
Sbjct: 117 KDEDWFVRIAAAFALGE----------IGDERAVEPLIKALKDEDGWVRQSAADAL 162
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 33/155 (21%)
Query: 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 61
E + PL++ L+ D V+RAAA AL QI + A+ LI L+ ED +
Sbjct: 44 ERAVEPLIKALKDEDAWVRRAAADAL-----------GQIGDERAVEPLIKALKDEDGWV 92
Query: 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
A +G + A++P+I L + AA LG+
Sbjct: 93 RQSAAVALGQIGDER-----------AVEPLIKALKDEDWFVRIAAAFALGE-------- 133
Query: 122 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 156
I AV PLI+ L+ D +R+ +A ALG +
Sbjct: 134 ---IGDERAVEPLIKALKDEDGWVRQSAADALGEI 165
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 21/113 (18%)
Query: 88 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLRE 147
A++P+I L + +R AA LGQ I AV PLI+ L+ D +R+
Sbjct: 46 AVEPLIKALKDEDAWVRRAAADALGQ-----------IGDERAVEPLIKALKDEDGWVRQ 94
Query: 148 MSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 200
+A ALG+ I + PL+K L ++ ++ AAFAL + D
Sbjct: 95 SAAVALGQ----------IGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE 137
>pdb|1BUO|A Chain A, Btb Domain From Plzf
Length = 121
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 326 PPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR 385
P PT + +Q TL DV +V+ + F+AHR L +S F +F ++++
Sbjct: 9 PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILF-----HRNSQ 63
Query: 386 DIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAA 423
+ + + F+ ++ + YT ++ + DLL AA
Sbjct: 64 HYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAA 101
>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM
PROMELOCYTIC Leukemia Zinc Finger Oncoprotein
Length = 116
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 326 PPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR 385
P PT + +Q TL DV +V+ + F+AHR L +S F +F ++++
Sbjct: 8 PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILF-----HRNSQ 62
Query: 386 DIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAA 423
+ + + F+ ++ + YT ++ + DLL AA
Sbjct: 63 HYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAA 100
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 347 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT 406
DVT +VE R+F AH+ L ASS F +F + +E+ IR E+F ++ +IY+
Sbjct: 35 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYS 89
Query: 407 GS-VDVTLDIAQDLLRAADQYLLEGLKRLCE 436
V V D+ +L+++ L G+K + E
Sbjct: 90 SKIVRVRSDLLDELIKSGQ---LLGVKFIAE 117
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-NKNQIVECNALPTLILMLR-SEDSAI 61
GIP LV LL+ +V A GAL+ ++F D+ NK I C+ +P L+ +LR + D +
Sbjct: 91 GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150
Query: 62 HYEAVGVIGNLVHSSPNIKKEVL 84
G + NL S +IK E++
Sbjct: 151 TEVITGTLWNL-SSHDSIKMEIV 172
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%)
Query: 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64
+P ++ +L F V+ AA L+ L ++ND+ K + + +P L+ +L +H
Sbjct: 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLG 109
Query: 65 AVGVIGNL 72
A G + N+
Sbjct: 110 ACGALKNI 117
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 12/120 (10%)
Query: 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDS 59
E + + +LL +V +AA+GALR LA D +++ +A+P L+ L ++S
Sbjct: 354 EKALSAIADLLTNEHERVVKAASGALRNLAV--DARNKELIGKHAIPNLVKNLPGGQQNS 411
Query: 60 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG-----LLSSCCSESQRE---AALLL 111
+ ++ VI L + I + + AA L+ G L++ + S++E AAL+L
Sbjct: 412 SWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVL 471
>pdb|3TT9|A Chain A, Crystal Structure Of The Stable Degradation Fragment Of
Human Plakophilin 2 Isoform A (Pkp2a) C752r Variant
Length = 233
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 19 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSP 77
VQRA GALR L F++++NK ++ E N +P L+ +L+ + D + G++ NL SS
Sbjct: 68 VQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL--SSN 125
Query: 78 NIKKEVLAAGAL 89
+ K ++ AL
Sbjct: 126 DKLKNLMITEAL 137
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 10/217 (4%)
Query: 8 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-----LMLRSEDSAIH 62
++E++ + Q +A R L K E I E + P ++ + R E+ +
Sbjct: 22 MIEMIFSKSPEQQLSATQKFRKLLSK--EPNPPIDEVISTPGVVARFVEFLKRKENCTLQ 79
Query: 63 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 122
+E+ V+ N+ + + V+ AGA+ I LLSS + Q +A LG A + C+
Sbjct: 80 FESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR 139
Query: 123 VHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK-LLD 180
+++ + PL+++ + + + + +AL L + A + +L LL
Sbjct: 140 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF 199
Query: 181 SKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKL 216
+ + +A +AL L+D D + I G ++L
Sbjct: 200 VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 236
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 85/178 (47%), Gaps = 2/178 (1%)
Query: 8 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 67
LVELL D KV A A+ + +D I+ C+AL +L+ +L S +I EA
Sbjct: 236 LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACW 295
Query: 68 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV-HIV 126
I N+ + + V+ A +I +L + +++EAA + + S ++ ++V
Sbjct: 296 TISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLV 355
Query: 127 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNG 184
+ G ++PL ++L D ++ +++ L + + + Q + G+ P L++ G
Sbjct: 356 ELGCIKPLCDLLTVMDSKIVQVALNGLENILR-LGEQEAKRNGTGINPYCALIEEAYG 412
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 7/166 (4%)
Query: 3 GGIPPLVELL--EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS- 59
G +P +ELL EF D VQ A AL +A + ++ +++CN LP L+ + ++
Sbjct: 104 GAVPIFIELLSSEFED--VQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRL 161
Query: 60 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 119
+ AV + NL + + L + LL ++ +A L + +
Sbjct: 162 TMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN 221
Query: 120 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL--AQDMHNQ 163
D ++ G R L+E+L D ++ + A+G + D+ Q
Sbjct: 222 DKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQ 267
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 7/181 (3%)
Query: 8 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 67
L LL +DT V A AL L+ ++ +++ L+ +L D + A+
Sbjct: 194 LSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALR 253
Query: 68 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES-QREAALLLGQFAATDSDCKVHIV 126
+GN+V + +I+ +V+ + + L S ES ++EA + A + ++
Sbjct: 254 AVGNIV-TGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVI 312
Query: 127 QRGAVRPLIEMLQSPDVQLREMSAFAL-----GRLAQDMHNQAGIAHNGGLVPLLKLLDS 181
LI +LQ+ + + R+ +A+A+ G A+ + + L LL ++DS
Sbjct: 313 DANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDS 372
Query: 182 K 182
K
Sbjct: 373 K 373
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 10/217 (4%)
Query: 8 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-----LMLRSEDSAIH 62
++E++ + Q +A R L K E I E + P ++ + R E+ +
Sbjct: 25 MIEMIFSKSPEQQLSATQKFRKLLSK--EPNPPIDEVISTPGVVARFVEFLKRKENCTLQ 82
Query: 63 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 122
+E+ V+ N+ + + V+ AGA+ I LLSS + Q +A LG A + C+
Sbjct: 83 FESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR 142
Query: 123 VHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK-LLD 180
+++ + PL+++ + + + + +AL L + A + +L LL
Sbjct: 143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF 202
Query: 181 SKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKL 216
+ + +A +AL L+D D + I G ++L
Sbjct: 203 VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 239
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 85/178 (47%), Gaps = 2/178 (1%)
Query: 8 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 67
LVELL D KV A A+ + +D I+ C+AL +L+ +L S +I EA
Sbjct: 239 LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACW 298
Query: 68 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV-HIV 126
I N+ + + V+ A +I +L + +++EAA + + S ++ ++V
Sbjct: 299 TISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLV 358
Query: 127 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNG 184
+ G ++PL ++L D ++ +++ L + + + Q + G+ P L++ G
Sbjct: 359 ELGCIKPLCDLLTVMDSKIVQVALNGLENILR-LGEQEAKRNGTGINPYCALIEEAYG 415
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 7/166 (4%)
Query: 3 GGIPPLVELL--EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS- 59
G +P +ELL EF D VQ A AL +A + ++ +++CN LP L+ + ++
Sbjct: 107 GAVPIFIELLSSEFED--VQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRL 164
Query: 60 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 119
+ AV + NL + + L + LL ++ +A L + +
Sbjct: 165 TMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN 224
Query: 120 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL--AQDMHNQ 163
D ++ G R L+E+L D ++ + A+G + D+ Q
Sbjct: 225 DKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQ 270
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 7/181 (3%)
Query: 8 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 67
L LL +DT V A AL L+ ++ +++ L+ +L D + A+
Sbjct: 197 LSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALR 256
Query: 68 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES-QREAALLLGQFAATDSDCKVHIV 126
+GN+V + +I+ +V+ + + L S ES ++EA + A + ++
Sbjct: 257 AVGNIV-TGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVI 315
Query: 127 QRGAVRPLIEMLQSPDVQLREMSAFAL-----GRLAQDMHNQAGIAHNGGLVPLLKLLDS 181
LI +LQ+ + + R+ +A+A+ G A+ + + L LL ++DS
Sbjct: 316 DANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDS 375
Query: 182 K 182
K
Sbjct: 376 K 376
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 347 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT 406
DVT +VE R+F AH+ L ASS F +F + +E+ IR E+F ++ +IY+
Sbjct: 33 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYS 87
Query: 407 GS-VDVTLDIAQDLLRAA 423
V V D+ +L+++
Sbjct: 88 SKIVRVRSDLLDELIKSG 105
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 347 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFIY 405
DV+ +V+G F AHR L ASS FR +F+ + +E+P ++ + F+ ++ F Y
Sbjct: 35 DVSVVVKGHAFKAHRAVLAASSSYFRDLFN----NSRSAVVELPAAVQPQSFQQILSFCY 90
Query: 406 TGSVDVTLDIAQDLLRAADQYL 427
TG + + + QDLL +L
Sbjct: 91 TGRLSMNVG-DQDLLMYTAGFL 111
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR-DIEIP-NIRWEVFELMMR 402
L DVT LVEG+RF AHR L A S F + G + DA + +P + + FE +++
Sbjct: 36 LCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVG---QTDAELTVTLPEEVTVKGFEPLIQ 92
Query: 403 FIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 435
F YT + ++ D ++ R + + ++ C
Sbjct: 93 FAYTAKLILSKDNVDEVCRCVEFLSVHNIEESC 125
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 2/185 (1%)
Query: 16 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 75
D + R AG L L+ + E I + +P L+ ML S ++ + A+ + NL+
Sbjct: 70 DVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 128
Query: 76 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 135
K V AG LQ ++ LL+ + L A + + K+ I+ G + L+
Sbjct: 129 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 188
Query: 136 EMLQSPDVQ-LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 194
++++ + L ++ L L+ N+ I GG+ L L + L N + L
Sbjct: 189 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 248
Query: 195 YGLAD 199
L+D
Sbjct: 249 RNLSD 253
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 100/276 (36%), Gaps = 72/276 (26%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED- 58
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 261 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 320
Query: 59 --------------SAIHYEA--------------------------------VGVIGNL 72
++ H EA VG+I NL
Sbjct: 321 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 380
Query: 73 VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL-------------------LLGQ 113
N + GA+ ++ LL ++QR ++ G
Sbjct: 381 ALCPAN-HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 439
Query: 114 FAATDSDCKVHIVQRG--AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGG 171
D IV RG + +++L SP ++ ++A L LAQD I G
Sbjct: 440 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGA 499
Query: 172 LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 207
PL +LL S+N + AA L+ ++ ED D+
Sbjct: 500 TAPLTELLHSRNEGVATYAAAVLFRMS--EDKPQDY 533
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 6/179 (3%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-S 59
+ GG+ +V LL T+ K L+ LA+ N E+K I+ L+ ++R+
Sbjct: 138 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE 197
Query: 60 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 119
+ + V+ L S N K ++ AG +Q +GL SQR L
Sbjct: 198 KLLWTTSRVLKVLSVCSSN-KPAIVEAGGMQ-ALGL--HLTDPSQRLVQNCLWTLRNLSD 253
Query: 120 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA-QDMHNQAGIAHNGGLVPLLK 177
G + L+++L S D+ + +A L L + N+ + GG+ L++
Sbjct: 254 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 312
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 2/185 (1%)
Query: 16 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 75
D + R AG L L+ + E I + +P L+ ML S ++ + A+ + NL+
Sbjct: 74 DVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 132
Query: 76 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 135
K V AG LQ ++ LL+ + L A + + K+ I+ G + L+
Sbjct: 133 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 192
Query: 136 EMLQSPDVQ-LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 194
++++ + L ++ L L+ N+ I GG+ L L + L N + L
Sbjct: 193 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 252
Query: 195 YGLAD 199
L+D
Sbjct: 253 RNLSD 257
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 104/275 (37%), Gaps = 70/275 (25%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED- 58
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 265 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 324
Query: 59 --------------SAIHYEA------------VGVIGNLVHSS---PNIKKEV-----L 84
++ H EA + V+ L+H P IK V L
Sbjct: 325 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 384
Query: 85 A-----------AGALQPVIGLLSSCCSESQREAAL-------------------LLGQF 114
A GA+ ++ LL ++QR ++ G
Sbjct: 385 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL 444
Query: 115 AATDSDCKVHIVQRG--AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL 172
D IV RG + +++L SP ++ ++A L LAQD I G
Sbjct: 445 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 504
Query: 173 VPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 207
PL +LL S+N + AA L+ ++ ED D+
Sbjct: 505 APLTELLHSRNEGVATYAAAVLFRMS--EDKPQDY 537
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 86/217 (39%), Gaps = 45/217 (20%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
+ GG+ +V LL T+ K L+ LA+ N E+K I+ L+ ++R+
Sbjct: 142 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-- 199
Query: 61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
YE L+ ++ + K +LS C S
Sbjct: 200 --YE------KLLWTTSRVLK-------------VLSVCSSN------------------ 220
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
K IV+ G ++ L L P +L + + L L+ Q G+ G L L++LL
Sbjct: 221 -KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EGLLGTLVQLLG 277
Query: 181 SKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKL 216
S + ++ AA L L +N N +VGG++ L
Sbjct: 278 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 314
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 404
L D TF+V+G F AH+ L A S+ F+ +F +KD ++I N ++ F+
Sbjct: 27 LCDCTFVVDGVHFKAHKAVLAACSEYFKMLF---VDQKDVVHLDISNAAG--LGQVLEFM 81
Query: 405 YTGSVDVTLDIAQDLLRAA 423
YT + ++ + D+L A
Sbjct: 82 YTAKLSLSPENVDDVLAVA 100
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 2/185 (1%)
Query: 16 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 75
D + R AG L L+ + E I + +P L+ ML S ++ + A+ + NL+
Sbjct: 77 DVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 135
Query: 76 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 135
K V AG LQ ++ LL+ + L A + + K+ I+ G + L+
Sbjct: 136 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 195
Query: 136 EMLQSPDVQ-LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 194
++++ + L ++ L L+ N+ I GG+ L L + L N + L
Sbjct: 196 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 255
Query: 195 YGLAD 199
L+D
Sbjct: 256 RNLSD 260
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 104/275 (37%), Gaps = 70/275 (25%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED- 58
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 268 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 327
Query: 59 --------------SAIHYEA------------VGVIGNLVHSS---PNIKKEV-----L 84
++ H EA + V+ L+H P IK V L
Sbjct: 328 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 387
Query: 85 A-----------AGALQPVIGLLSSCCSESQREAAL-------------------LLGQF 114
A GA+ ++ LL ++QR ++ G
Sbjct: 388 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL 447
Query: 115 AATDSDCKVHIVQRG--AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL 172
D IV RG + +++L SP ++ ++A L LAQD I G
Sbjct: 448 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 507
Query: 173 VPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 207
PL +LL S+N + AA L+ ++ ED D+
Sbjct: 508 APLTELLHSRNEGVATYAAAVLFRMS--EDKPQDY 540
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 86/217 (39%), Gaps = 45/217 (20%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
+ GG+ +V LL T+ K L+ LA+ N E+K I+ L+ ++R+
Sbjct: 145 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-- 202
Query: 61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
YE L+ ++ + K +LS C S
Sbjct: 203 --YE------KLLWTTSRVLK-------------VLSVCSSN------------------ 223
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
K IV+ G ++ L L P +L + + L L+ Q G+ G L L++LL
Sbjct: 224 -KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EGLLGTLVQLLG 280
Query: 181 SKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKL 216
S + ++ AA L L +N N +VGG++ L
Sbjct: 281 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 317
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 2/185 (1%)
Query: 16 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 75
D + R AG L L+ + E I + +P L+ ML S ++ + A+ + NL+
Sbjct: 76 DVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 134
Query: 76 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 135
K V AG LQ ++ LL+ + L A + + K+ I+ G + L+
Sbjct: 135 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 194
Query: 136 EMLQSPDVQ-LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 194
++++ + L ++ L L+ N+ I GG+ L L + L N + L
Sbjct: 195 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 254
Query: 195 YGLAD 199
L+D
Sbjct: 255 RNLSD 259
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 104/275 (37%), Gaps = 70/275 (25%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED- 58
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 267 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 326
Query: 59 --------------SAIHYEA------------VGVIGNLVHSS---PNIKKEV-----L 84
++ H EA + V+ L+H P IK V L
Sbjct: 327 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 386
Query: 85 A-----------AGALQPVIGLLSSCCSESQREAAL-------------------LLGQF 114
A GA+ ++ LL ++QR ++ G
Sbjct: 387 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL 446
Query: 115 AATDSDCKVHIVQRG--AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL 172
D IV RG + +++L SP ++ ++A L LAQD I G
Sbjct: 447 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 506
Query: 173 VPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 207
PL +LL S+N + AA L+ ++ ED D+
Sbjct: 507 APLTELLHSRNEGVATYAAAVLFRMS--EDKPQDY 539
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 86/217 (39%), Gaps = 45/217 (20%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
+ GG+ +V LL T+ K L+ LA+ N E+K I+ L+ ++R+
Sbjct: 144 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-- 201
Query: 61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
YE L+ ++ + K +LS C S
Sbjct: 202 --YE------KLLWTTSRVLK-------------VLSVCSSN------------------ 222
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
K IV+ G ++ L L P +L + + L L+ Q G+ G L L++LL
Sbjct: 223 -KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EGLLGTLVQLLG 279
Query: 181 SKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKL 216
S + ++ AA L L +N N +VGG++ L
Sbjct: 280 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 316
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 2/185 (1%)
Query: 16 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 75
D + R AG L L+ + E I + +P L+ ML S ++ + A+ + NL+
Sbjct: 71 DVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 129
Query: 76 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 135
K V AG LQ ++ LL+ + L A + + K+ I+ G + L+
Sbjct: 130 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 189
Query: 136 EMLQSPDVQ-LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 194
++++ + L ++ L L+ N+ I GG+ L L + L N + L
Sbjct: 190 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 249
Query: 195 YGLAD 199
L+D
Sbjct: 250 RNLSD 254
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 104/275 (37%), Gaps = 70/275 (25%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED- 58
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 262 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 321
Query: 59 --------------SAIHYEA------------VGVIGNLVHSS---PNIKKEV-----L 84
++ H EA + V+ L+H P IK V L
Sbjct: 322 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 381
Query: 85 A-----------AGALQPVIGLLSSCCSESQREAAL-------------------LLGQF 114
A GA+ ++ LL ++QR ++ G
Sbjct: 382 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL 441
Query: 115 AATDSDCKVHIVQRG--AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL 172
D IV RG + +++L SP ++ ++A L LAQD I G
Sbjct: 442 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 501
Query: 173 VPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 207
PL +LL S+N + AA L+ ++ ED D+
Sbjct: 502 APLTELLHSRNEGVATYAAAVLFRMS--EDKPQDY 534
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 86/217 (39%), Gaps = 45/217 (20%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
+ GG+ +V LL T+ K L+ LA+ N E+K I+ L+ ++R+
Sbjct: 139 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-- 196
Query: 61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
YE L+ ++ + K +LS C S
Sbjct: 197 --YE------KLLWTTSRVLK-------------VLSVCSSN------------------ 217
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
K IV+ G ++ L L P +L + + L L+ Q G+ G L L++LL
Sbjct: 218 -KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EGLLGTLVQLLG 274
Query: 181 SKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKL 216
S + ++ AA L L +N N +VGG++ L
Sbjct: 275 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 311
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 2/185 (1%)
Query: 16 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 75
D + R AG L L+ + E I + +P L+ ML S ++ + A+ + NL+
Sbjct: 60 DVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 118
Query: 76 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 135
K V AG LQ ++ LL+ + L A + + K+ I+ G + L+
Sbjct: 119 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 178
Query: 136 EMLQSPDVQ-LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 194
++++ + L ++ L L+ N+ I GG+ L L + L N + L
Sbjct: 179 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 238
Query: 195 YGLAD 199
L+D
Sbjct: 239 RNLSD 243
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 102/268 (38%), Gaps = 68/268 (25%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED- 58
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 251 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 310
Query: 59 --------------SAIHYEA------------VGVIGNLVHSS---PNIKKEV-----L 84
++ H EA + V+ L+H P IK V L
Sbjct: 311 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 370
Query: 85 A-----------AGALQPVIGLLSSCCSESQREAAL-------------------LLGQF 114
A GA+ ++ LL ++QR ++ G
Sbjct: 371 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL 430
Query: 115 AATDSDCKVHIVQRG--AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL 172
D IV RG + +++L SP ++ ++A L LAQD I G
Sbjct: 431 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 490
Query: 173 VPLLKLLDSKNGSLQHNAAFALYGLADN 200
PL +LL S+N + AA L+ ++++
Sbjct: 491 APLTELLHSRNEGVATYAAAVLFRMSED 518
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 86/217 (39%), Gaps = 45/217 (20%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
+ GG+ +V LL T+ K L+ LA+ N E+K I+ L+ ++R+
Sbjct: 128 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-- 185
Query: 61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
YE L+ ++ + K +LS C S
Sbjct: 186 --YE------KLLWTTSRVLK-------------VLSVCSSN------------------ 206
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
K IV+ G ++ L L P +L + + L L+ Q G+ G L L++LL
Sbjct: 207 -KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EGLLGTLVQLLG 263
Query: 181 SKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKL 216
S + ++ AA L L +N N +VGG++ L
Sbjct: 264 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 300
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 2/185 (1%)
Query: 16 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 75
D + R AG L L+ + E I + +P L+ ML S ++ + A+ + NL+
Sbjct: 75 DVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 133
Query: 76 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 135
K V AG LQ ++ LL+ + L A + + K+ I+ G + L+
Sbjct: 134 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 193
Query: 136 EMLQSPDVQ-LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 194
++++ + L ++ L L+ N+ I GG+ L L + L N + L
Sbjct: 194 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 253
Query: 195 YGLAD 199
L+D
Sbjct: 254 RNLSD 258
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 102/268 (38%), Gaps = 68/268 (25%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED- 58
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 266 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 325
Query: 59 --------------SAIHYEA------------VGVIGNLVHSS---PNIKKEV-----L 84
++ H EA + V+ L+H P IK V L
Sbjct: 326 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 385
Query: 85 A-----------AGALQPVIGLLSSCCSESQREAAL-------------------LLGQF 114
A GA+ ++ LL ++QR ++ G
Sbjct: 386 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL 445
Query: 115 AATDSDCKVHIVQRG--AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL 172
D IV RG + +++L SP ++ ++A L LAQD I G
Sbjct: 446 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 505
Query: 173 VPLLKLLDSKNGSLQHNAAFALYGLADN 200
PL +LL S+N + AA L+ ++++
Sbjct: 506 APLTELLHSRNEGVATYAAAVLFRMSED 533
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 86/217 (39%), Gaps = 45/217 (20%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
+ GG+ +V LL T+ K L+ LA+ N E+K I+ L+ ++R+
Sbjct: 143 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-- 200
Query: 61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
YE L+ ++ + K +LS C S
Sbjct: 201 --YE------KLLWTTSRVLK-------------VLSVCSSN------------------ 221
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
K IV+ G ++ L L P +L + + L L+ Q G+ G L L++LL
Sbjct: 222 -KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EGLLGTLVQLLG 278
Query: 181 SKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKL 216
S + ++ AA L L +N N +VGG++ L
Sbjct: 279 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 315
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 2/185 (1%)
Query: 16 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 75
D + R AG L L+ + E I + +P L+ ML S ++ + A+ + NL+
Sbjct: 75 DVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 133
Query: 76 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 135
K V AG LQ ++ LL+ + L A + + K+ I+ G + L+
Sbjct: 134 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 193
Query: 136 EMLQSPDVQ-LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 194
++++ + L ++ L L+ N+ I GG+ L L + L N + L
Sbjct: 194 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 253
Query: 195 YGLAD 199
L+D
Sbjct: 254 RNLSD 258
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 101/267 (37%), Gaps = 68/267 (25%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED- 58
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 266 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 325
Query: 59 --------------SAIHYEA------------VGVIGNLVHSS---PNIKKEV-----L 84
++ H EA + V+ L+H P IK V L
Sbjct: 326 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 385
Query: 85 A-----------AGALQPVIGLLSSCCSESQREAAL-------------------LLGQF 114
A GA+ ++ LL ++QR ++ G
Sbjct: 386 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL 445
Query: 115 AATDSDCKVHIVQRG--AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL 172
D IV RG + +++L SP ++ ++A L LAQD I G
Sbjct: 446 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 505
Query: 173 VPLLKLLDSKNGSLQHNAAFALYGLAD 199
PL +LL S+N + AA L+ +++
Sbjct: 506 APLTELLHSRNEGVATYAAAVLFRMSE 532
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 86/217 (39%), Gaps = 45/217 (20%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
+ GG+ +V LL T+ K L+ LA+ N E+K I+ L+ ++R+
Sbjct: 143 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-- 200
Query: 61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
YE L+ ++ + K +LS C S
Sbjct: 201 --YE------KLLWTTSRVLK-------------VLSVCSSN------------------ 221
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
K IV+ G ++ L L P +L + + L L+ Q G+ G L L++LL
Sbjct: 222 -KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EGLLGTLVQLLG 278
Query: 181 SKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKL 216
S + ++ AA L L +N N +VGG++ L
Sbjct: 279 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 315
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 2/185 (1%)
Query: 16 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 75
D + R AG L L+ + E I + +P L+ ML S ++ + A+ + NL+
Sbjct: 73 DVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 131
Query: 76 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 135
K V AG LQ ++ LL+ + L A + + K+ I+ G + L+
Sbjct: 132 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 191
Query: 136 EMLQSPDVQ-LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 194
++++ + L ++ L L+ N+ I GG+ L L + L N + L
Sbjct: 192 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 251
Query: 195 YGLAD 199
L+D
Sbjct: 252 RNLSD 256
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 100/266 (37%), Gaps = 68/266 (25%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED- 58
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 264 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 323
Query: 59 --------------SAIHYEA------------VGVIGNLVHSS---PNIKKEV-----L 84
++ H EA + V+ L+H P IK V L
Sbjct: 324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 383
Query: 85 A-----------AGALQPVIGLLSSCCSESQREAAL-------------------LLGQF 114
A GA+ ++ LL ++QR ++ G
Sbjct: 384 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL 443
Query: 115 AATDSDCKVHIVQRG--AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL 172
D IV RG + +++L SP ++ ++A L LAQD I G
Sbjct: 444 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 503
Query: 173 VPLLKLLDSKNGSLQHNAAFALYGLA 198
PL +LL S+N + AA L+ ++
Sbjct: 504 APLTELLHSRNEGVATYAAAVLFRMS 529
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 86/217 (39%), Gaps = 45/217 (20%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
+ GG+ +V LL T+ K L+ LA+ N E+K I+ L+ ++R+
Sbjct: 141 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-- 198
Query: 61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
YE L+ ++ + K +LS C S
Sbjct: 199 --YE------KLLWTTSRVLK-------------VLSVCSSN------------------ 219
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
K IV+ G ++ L L P +L + + L L+ Q G+ G L L++LL
Sbjct: 220 -KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EGLLGTLVQLLG 276
Query: 181 SKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKL 216
S + ++ AA L L +N N +VGG++ L
Sbjct: 277 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 313
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 2/185 (1%)
Query: 16 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 75
D + R AG L L+ + E I + +P L+ ML S ++ + A+ + NL+
Sbjct: 71 DVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 129
Query: 76 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 135
K V AG LQ ++ LL+ + L A + + K+ I+ G + L+
Sbjct: 130 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 189
Query: 136 EMLQSPDVQ-LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 194
++++ + L ++ L L+ N+ I GG+ L L + L N + L
Sbjct: 190 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 249
Query: 195 YGLAD 199
L+D
Sbjct: 250 RNLSD 254
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 100/266 (37%), Gaps = 68/266 (25%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED- 58
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 262 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 321
Query: 59 --------------SAIHYEA------------VGVIGNLVHSS---PNIKKEV-----L 84
++ H EA + V+ L+H P IK V L
Sbjct: 322 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 381
Query: 85 A-----------AGALQPVIGLLSSCCSESQREAAL-------------------LLGQF 114
A GA+ ++ LL ++QR ++ G
Sbjct: 382 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL 441
Query: 115 AATDSDCKVHIVQRG--AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL 172
D IV RG + +++L SP ++ ++A L LAQD I G
Sbjct: 442 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 501
Query: 173 VPLLKLLDSKNGSLQHNAAFALYGLA 198
PL +LL S+N + AA L+ ++
Sbjct: 502 APLTELLHSRNEGVATYAAAVLFRMS 527
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 86/217 (39%), Gaps = 45/217 (20%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
+ GG+ +V LL T+ K L+ LA+ N E+K I+ L+ ++R+
Sbjct: 139 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-- 196
Query: 61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
YE L+ ++ + K +LS C S
Sbjct: 197 --YE------KLLWTTSRVLK-------------VLSVCSSN------------------ 217
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
K IV+ G ++ L L P +L + + L L+ Q G+ G L L++LL
Sbjct: 218 -KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EGLLGTLVQLLG 274
Query: 181 SKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKL 216
S + ++ AA L L +N N +VGG++ L
Sbjct: 275 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 311
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 404
L D TF+V+G F AH+ L A S+ F+ +F +KD ++I N ++ F+
Sbjct: 25 LCDCTFVVDGVHFKAHKAVLAACSEYFKMLF---VDQKDVVHLDISNAAG--LGQVLEFM 79
Query: 405 YTGSVDVTLDIAQDLLRAA 423
YT + ++ + D+L A
Sbjct: 80 YTAKLSLSPENVDDVLAVA 98
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 2/185 (1%)
Query: 16 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 75
D + R AG L L+ + E I + +P L+ ML S ++ + A+ + NL+
Sbjct: 58 DVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 116
Query: 76 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 135
K V AG LQ ++ LL+ + L A + + K+ I+ G + L+
Sbjct: 117 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 176
Query: 136 EMLQSPDVQ-LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 194
++++ + L ++ L L+ N+ I GG+ L L + L N + L
Sbjct: 177 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 236
Query: 195 YGLAD 199
L+D
Sbjct: 237 RNLSD 241
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 102/268 (38%), Gaps = 68/268 (25%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED- 58
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 249 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 308
Query: 59 --------------SAIHYEA------------VGVIGNLVHSS---PNIKKEV-----L 84
++ H EA + V+ L+H P IK V L
Sbjct: 309 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 368
Query: 85 A-----------AGALQPVIGLLSSCCSESQREAAL-------------------LLGQF 114
A GA+ ++ LL ++QR ++ G
Sbjct: 369 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL 428
Query: 115 AATDSDCKVHIVQRG--AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL 172
D IV RG + +++L SP ++ ++A L LAQD I G
Sbjct: 429 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 488
Query: 173 VPLLKLLDSKNGSLQHNAAFALYGLADN 200
PL +LL S+N + AA L+ ++++
Sbjct: 489 APLTELLHSRNEGVATYAAAVLFRMSED 516
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 86/217 (39%), Gaps = 45/217 (20%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
+ GG+ +V LL T+ K L+ LA+ N E+K I+ L+ ++R+
Sbjct: 126 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-- 183
Query: 61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
YE L+ ++ + K +LS C S
Sbjct: 184 --YE------KLLWTTSRVLK-------------VLSVCSSN------------------ 204
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
K IV+ G ++ L L P +L + + L L+ Q G+ G L L++LL
Sbjct: 205 -KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EGLLGTLVQLLG 261
Query: 181 SKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKL 216
S + ++ AA L L +N N +VGG++ L
Sbjct: 262 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 298
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 2/185 (1%)
Query: 16 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 75
D + R AG L L+ + E I + +P L+ ML S ++ + A+ + NL+
Sbjct: 58 DVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 116
Query: 76 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 135
K V AG LQ ++ LL+ + L A + + K+ I+ G + L+
Sbjct: 117 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 176
Query: 136 EMLQSPDVQ-LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 194
++++ + L ++ L L+ N+ I GG+ L L + L N + L
Sbjct: 177 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 236
Query: 195 YGLAD 199
L+D
Sbjct: 237 RNLSD 241
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 100/266 (37%), Gaps = 68/266 (25%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED- 58
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 249 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 308
Query: 59 --------------SAIHYEA------------VGVIGNLVHSS---PNIKKEV-----L 84
++ H EA + V+ L+H P IK V L
Sbjct: 309 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 368
Query: 85 A-----------AGALQPVIGLLSSCCSESQREAAL-------------------LLGQF 114
A GA+ ++ LL ++QR ++ G
Sbjct: 369 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL 428
Query: 115 AATDSDCKVHIVQRG--AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL 172
D IV RG + +++L SP ++ ++A L LAQD I G
Sbjct: 429 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 488
Query: 173 VPLLKLLDSKNGSLQHNAAFALYGLA 198
PL +LL S+N + AA L+ ++
Sbjct: 489 APLTELLHSRNEGVATYAAAVLFRMS 514
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 86/217 (39%), Gaps = 45/217 (20%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
+ GG+ +V LL T+ K L+ LA+ N E+K I+ L+ ++R+
Sbjct: 126 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-- 183
Query: 61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
YE L+ ++ + K +LS C S
Sbjct: 184 --YE------KLLWTTSRVLK-------------VLSVCSSN------------------ 204
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
K IV+ G ++ L L P +L + + L L+ Q G+ G L L++LL
Sbjct: 205 -KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EGLLGTLVQLLG 261
Query: 181 SKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKL 216
S + ++ AA L L +N N +VGG++ L
Sbjct: 262 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 298
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 2/185 (1%)
Query: 16 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 75
D + R AG L L+ + E I + +P L+ ML S ++ + A+ + NL+
Sbjct: 62 DVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 120
Query: 76 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 135
K V AG LQ ++ LL+ + L A + + K+ I+ G + L+
Sbjct: 121 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 180
Query: 136 EMLQSPDVQ-LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 194
++++ + L ++ L L+ N+ I GG+ L L + L N + L
Sbjct: 181 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 240
Query: 195 YGLAD 199
L+D
Sbjct: 241 RNLSD 245
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 101/267 (37%), Gaps = 68/267 (25%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED- 58
MEG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 253 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 312
Query: 59 --------------SAIHYEA------------VGVIGNLVHSS---PNIKKEV-----L 84
++ H EA + V+ L+H P IK V L
Sbjct: 313 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 372
Query: 85 A-----------AGALQPVIGLLSSCCSESQREAAL-------------------LLGQF 114
A GA+ ++ LL ++QR ++ G
Sbjct: 373 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL 432
Query: 115 AATDSDCKVHIVQRG--AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL 172
D IV RG + +++L SP ++ ++A L LAQD I G
Sbjct: 433 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 492
Query: 173 VPLLKLLDSKNGSLQHNAAFALYGLAD 199
PL +LL S+N + AA L+ +++
Sbjct: 493 APLTELLHSRNEGVATYAAAVLFRMSE 519
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 86/217 (39%), Gaps = 45/217 (20%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
+ GG+ +V LL T+ K L+ LA+ N E+K I+ L+ ++R+
Sbjct: 130 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-- 187
Query: 61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
YE L+ ++ + K +LS C S
Sbjct: 188 --YE------KLLWTTSRVLK-------------VLSVCSSN------------------ 208
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
K IV+ G ++ L L P +L + + L L+ Q G+ G L L++LL
Sbjct: 209 -KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EGLLGTLVQLLG 265
Query: 181 SKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKL 216
S + ++ AA L L +N N +VGG++ L
Sbjct: 266 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 302
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 2/185 (1%)
Query: 16 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 75
D + R +G L L+ E I + +P L+ ML S ++ + A+ + NL+
Sbjct: 206 DVETARCTSGTLHNLSHHR-EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLH 264
Query: 76 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 135
K V AG LQ ++ LL+ + L A + + K+ I+ G + L+
Sbjct: 265 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 324
Query: 136 EMLQSPDVQ-LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 194
++++ + L ++ L L+ N+ I GG+ L L + L N + L
Sbjct: 325 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 384
Query: 195 YGLAD 199
L+D
Sbjct: 385 RNLSD 389
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 101/275 (36%), Gaps = 70/275 (25%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI--------- 51
MEG + LV+LL D V AAG L L N +NK + + + L+
Sbjct: 397 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 456
Query: 52 -------------LMLRSEDSAIHYEAV------GVIGNLVHSS---PNIKKEV-----L 84
L R +D+ + AV V+ L+H P IK V L
Sbjct: 457 EDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 516
Query: 85 A-----------AGALQPVIGLLSSCCSESQREAAL-------------------LLGQF 114
A GA+ ++ LL ++QR ++ G
Sbjct: 517 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGAL 576
Query: 115 AATDSDCKVHIVQRG--AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL 172
D IV RG + +++L SP ++ ++A L LAQD I G
Sbjct: 577 HILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 636
Query: 173 VPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 207
PL +LL S+N + AA L+ ++ ED D+
Sbjct: 637 APLTELLHSRNEGVATYAAAVLFRMS--EDKPQDY 669
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 6/179 (3%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-S 59
+ GG+ +V LL T+ K L+ LA+ N E+K I+ L+ ++R+
Sbjct: 274 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE 333
Query: 60 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 119
+ + V+ L S N K ++ AG +Q +GL SQR L
Sbjct: 334 KLLWTTSRVLKVLSVCSSN-KPAIVEAGGMQ-ALGL--HLTDPSQRLVQNCLWTLRNLSD 389
Query: 120 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA-QDMHNQAGIAHNGGLVPLLK 177
G + L+++L S D+ + +A L L + N+ + GG+ L++
Sbjct: 390 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 448
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRF 403
L DVT VEG+RF AHR L A S F + G + +I +P + + FE +++F
Sbjct: 29 LCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVG--QADGELNITLPEEVTVKGFEPLIQF 86
Query: 404 IYTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 435
YT + ++ + ++ + + + ++ C
Sbjct: 87 AYTAKLILSKENVDEVCKCVEFLSVHNIEESC 118
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 1/160 (0%)
Query: 41 IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC 100
I + +P L+ ML S ++ + A+ + NL+ K V A LQ ++ LL+
Sbjct: 99 IFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKNN 158
Query: 101 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALGRLAQD 159
+ L A + + K+ I+ G + L++++++ + L ++ L L+
Sbjct: 159 PKFLAITTDCLQLLAYGNQESKLIILANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSVC 218
Query: 160 MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 199
N+ I GG+ L K L S + L N + L L+D
Sbjct: 219 PSNKPAIVEAGGMQALGKHLTSNSPRLVQNCLWTLRNLSD 258
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 86/205 (41%), Gaps = 34/205 (16%)
Query: 4 GIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 62
GIP +V+LL + + +A G +R LA N + E +P L+ +L
Sbjct: 358 GIPAIVKLLNQPNQWPLVKATIGLIRNLAL-CPANHAPLQEAAVIPRLVQLL-------- 408
Query: 63 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG-----QFAAT 117
V + + ++ V AAG QP ++ R ++ G A
Sbjct: 409 ----------VKAHQDAQRHV-AAGTQQPY--------TDGVRMEEIVEGCTGALHILAR 449
Query: 118 DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK 177
D ++ I + + +++L S ++ ++A L LAQD I G PL++
Sbjct: 450 DPMNRMEIFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQDKEAADAIDAEGASAPLME 509
Query: 178 LLDSKNGSLQHNAAFALYGLADNED 202
LL S+N AA L+ ++++++
Sbjct: 510 LLHSRNEGTATYAAAVLFRISEDKN 534
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRF 403
L DVT +VE + F AHR L A S+ F G + K+ + +P + F +++F
Sbjct: 32 LCDVTLIVERKEFRAHRAVLAACSEYFWQALVG--QTKNDLVVSLPEEVTARGFGPLLQF 89
Query: 404 IYTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 435
YT + ++ + ++++R A+ + L+ C
Sbjct: 90 AYTAKLLLSRENIREVIRCAEFLRMHNLEDSC 121
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 35.8 bits (81), Expect = 0.065, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDI--EIPNIRWEVFELMMR 402
L D T ++ +F AHR L + S+ F A+ YR ++ + ++ + F+ ++
Sbjct: 22 LCDCTIVIGEFQFKAHRNVLASFSEYFGAI----YRSTSENNVFLDQSQVKADGFQKLLE 77
Query: 403 FIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCE 436
FIYTG++++ +++ +AAD +E + C+
Sbjct: 78 FIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCK 111
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMF-DGGYREKDARDIEIPNIRWEVFELMMRF 403
L+DV +V +F AH+ L+A S F ++F D R +++ P I E F +++ F
Sbjct: 29 LTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLD-PEINPEGFNILLDF 87
Query: 404 IYTGSVDV 411
+YT +++
Sbjct: 88 MYTSRLNL 95
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 2/185 (1%)
Query: 16 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 75
D + R AG L L+ + E I + +P L+ L S ++ + A+ + NL+
Sbjct: 15 DVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLLH 73
Query: 76 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 135
K V AG LQ + LL+ + L A + + K+ I+ G + L+
Sbjct: 74 QEGAKXAVRLAGGLQKXVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 133
Query: 136 EMLQSPDVQ-LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 194
+ ++ + L ++ L L+ N+ I GG L L + L N + L
Sbjct: 134 NIXRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGXQALGLHLTDPSQRLVQNCLWTL 193
Query: 195 YGLAD 199
L+D
Sbjct: 194 RNLSD 198
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 93/263 (35%), Gaps = 70/263 (26%)
Query: 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSED-- 58
EG + LV+LL D V AAG L L N +NK + + + L+ +LR+ D
Sbjct: 207 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKXXVCQVGGIEALVRTVLRAGDRE 266
Query: 59 -------------SAIHYEA--------------------------------VGVIGNLV 73
++ H EA VG+I NL
Sbjct: 267 DITEPAICALRHLTSRHQEAEXAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA 326
Query: 74 HSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL-------------------LLGQF 114
N + GA+ ++ LL ++QR ++ G
Sbjct: 327 LCPAN-HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRXEEIVEGCTGAL 385
Query: 115 AATDSDCKVHIVQRG--AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL 172
D IV RG + +++L SP ++ ++A L LAQD I G
Sbjct: 386 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 445
Query: 173 VPLLKLLDSKNGSLQHNAAFALY 195
PL +LL S+N + AA L+
Sbjct: 446 APLTELLHSRNEGVATYAAAVLF 468
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 82/217 (37%), Gaps = 45/217 (20%)
Query: 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 60
+ GG+ V LL T+ K L+ LA+ N E+K I+ L+ + R+
Sbjct: 83 LAGGLQKXVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIXRTYT-- 140
Query: 61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120
YE L+ ++ + K +LS C S
Sbjct: 141 --YE------KLLWTTSRVLK-------------VLSVCSSN------------------ 161
Query: 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180
K IV+ G + L L P +L + + L L+ Q G G L L++LL
Sbjct: 162 -KPAIVEAGGXQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGX--EGLLGTLVQLLG 218
Query: 181 SKNGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKL 216
S + ++ AA L L +N N +VGG++ L
Sbjct: 219 SDDINVVTCAAGILSNLTCNNYKNKXXVCQVGGIEAL 255
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 5 IPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 63
+ +V ++ T D + R AG L L+ + E I + +P L+ ML S ++ +
Sbjct: 57 VSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLF 115
Query: 64 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
A+ + NL+ K V AG LQ ++ LL+ +F A +DC
Sbjct: 116 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV-----------KFLAITTDC 162
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 5 IPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 63
+ +V ++ T D + R AG L L+ + E I + +P L+ ML S ++ +
Sbjct: 57 VSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLF 115
Query: 64 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121
A+ + NL+ K V AG LQ ++ LL+ +F A +DC
Sbjct: 116 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV-----------KFLAITTDC 162
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The Krueppel
Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 347 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT 406
D T V G F AH L S F++++ G + +P E+F L++ F YT
Sbjct: 26 DATLDVGGLVFKAHWSVLACCSHFFQSLYGDG----SGGSVVLPAGFAEIFGLLLDFFYT 81
Query: 407 GSVDVTLDIAQDLLRAADQYLLEGLKRLCE 436
G + +T +L AA + + LC+
Sbjct: 82 GHLALTSGNRDQVLLAARELRVPEAVELCQ 111
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 345 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 404
L+DV +V +F AH+ L+A S F ++F + + P I E F +++ F+
Sbjct: 32 LTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPEGFCILLDFM 91
Query: 405 YTGSVDV 411
YT +++
Sbjct: 92 YTSRLNL 98
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 32.0 bits (71), Expect = 0.78, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 347 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT 406
D T V G F AH L S F+ ++ G + +P E+F L++ F YT
Sbjct: 27 DATLDVGGLVFKAHWSVLACCSHFFQRIYGDG----TGGSVVLPAGFAEIFGLLLDFFYT 82
Query: 407 GSVDVTLDIAQDLLRAADQYLLEGLKRLCE 436
G + +T +L AA + + LC+
Sbjct: 83 GHLALTSGNRDQVLLAAKELRVPEAVELCQ 112
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 130 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD---SKNGSL 186
A+ LIE+++ P V +R+ +A+ +GR+ ++ +A I ++ L PLL+ L S +
Sbjct: 409 AMPTLIELMKDPSVVVRDTTAWTVGRIC-ELLPEAAI-NDVYLAPLLQCLIEGLSAEPRV 466
Query: 187 QHNAAFALYGLADNEDNVAD 206
N +A LA+ AD
Sbjct: 467 ASNVCWAFSSLAEAAYEAAD 486
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 130 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD---SKNGSL 186
A+ LIE+++ P V +R+ +A+ +GR+ ++ +A I ++ L PLL+ L S +
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRIC-ELLPEAAI-NDVYLAPLLQCLIEGLSAEPRV 466
Query: 187 QHNAAFALYGLAD 199
N +A LA+
Sbjct: 467 ASNVCWAFSSLAE 479
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 130 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD---SKNGSL 186
A+ LIE+++ P V +R+ +A+ +GR+ ++ +A I ++ L PLL+ L S +
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRIC-ELLPEAAI-NDVYLAPLLQCLIEGLSAEPRV 466
Query: 187 QHNAAFALYGLADNEDNVAD 206
N +A LA+ AD
Sbjct: 467 ASNVCWAFSSLAEAAYEAAD 486
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 130 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD---SKNGSL 186
A+ LIE+++ P V +R+ +A+ +GR+ ++ +A I ++ L PLL+ L S +
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRIC-ELLPEAAI-NDVYLAPLLQCLIEGLSAEPRV 466
Query: 187 QHNAAFALYGLADNEDNVAD 206
N +A LA+ AD
Sbjct: 467 ASNVCWAFSSLAEAAYEAAD 486
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 130 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD---SKNGSL 186
A+ LIE+++ P V +R+ +A+ +GR+ + + A ++ L PLL+ L S +
Sbjct: 284 AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA--INDVYLAPLLQCLIEGLSAEPRV 341
Query: 187 QHNAAFALYGLADNEDNVAD 206
N +A LA+ AD
Sbjct: 342 ASNVCWAFSSLAEAAYEAAD 361
>pdb|3AU3|A Chain A, Crystal Structure Of Armadillo Repeat Domain Of Apc
Length = 344
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 1 MEGGIPPLVELLEF---TDT-KVQRAAAGALR---TLAFKNDENKNQIVECNALPTLILM 53
++G + LV L + T+T + + G LR +L N++++ + E N L TL+
Sbjct: 221 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 280
Query: 54 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 98
L+S I A G + NL +P ++ + GA+ + L+ S
Sbjct: 281 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDXGAVSXLKNLIHS 325
>pdb|3NMW|A Chain A, Crytal Structure Of Armadillo Repeats Domain Of Apc
pdb|3NMW|B Chain B, Crytal Structure Of Armadillo Repeats Domain Of Apc
Length = 354
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 1 MEGGIPPLVELLEF---TDT-KVQRAAAGALR---TLAFKNDENKNQIVECNALPTLILM 53
++G + LV L + T+T + + G LR +L N++++ + E N L TL+
Sbjct: 212 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 271
Query: 54 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 98
L+S I A G + NL +P ++ + GA+ + L+ S
Sbjct: 272 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDXGAVSXLKNLIHS 316
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 1 MEGGIPPLVELLEF---TDT-KVQRAAAGALR---TLAFKNDENKNQIVECNALPTLILM 53
++G + LV L + T+T + + G LR +L N++++ + E N L TL+
Sbjct: 328 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 387
Query: 54 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 98
L+S I A G + NL +P ++ + GA+ + L+ S
Sbjct: 388 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS 432
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 1 MEGGIPPLVELLEF---TDT-KVQRAAAGALR---TLAFKNDENKNQIVECNALPTLILM 53
++G + LV L + T+T + + G LR +L N++++ + E N L TL+
Sbjct: 214 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 273
Query: 54 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 98
L+S I A G + NL +P ++ + GA+ + L+ S
Sbjct: 274 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS 318
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 1 MEGGIPPLVELLEF---TDT-KVQRAAAGALR---TLAFKNDENKNQIVECNALPTLILM 53
++G + LV L + T+T + + G LR +L N++++ + E N L TL+
Sbjct: 212 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 271
Query: 54 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 98
L+S I A G + NL +P ++ + GA+ + L+ S
Sbjct: 272 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS 316
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 1 MEGGIPPLVELLEF---TDT-KVQRAAAGALR---TLAFKNDENKNQIVECNALPTLILM 53
++G + LV L + T+T + + G LR +L N++++ + E N L TL+
Sbjct: 212 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 271
Query: 54 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 98
L+S I A G + NL +P ++ + GA+ + L+ S
Sbjct: 272 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS 316
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 2/144 (1%)
Query: 339 FVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR--DIEIPNIRWEV 396
F + D +++G + L A+S R + + D IE+ I V
Sbjct: 25 FREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVXV 84
Query: 397 FELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSE 456
++ +I++G + + D QD+++AAD LL LK LC + I+ EN + + +
Sbjct: 85 XREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFAL 144
Query: 457 AFHAISLRHTCILYIMEHFDKLST 480
+ + + Y+ HF +S+
Sbjct: 145 HYCLHHVHYLATEYLETHFRDVSS 168
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 130 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL 179
A+ LIE+++ P V +R+ +A+ +GR+ ++ +A I ++ L PLL+ L
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRIC-ELLPEAAI-NDVYLAPLLQCL 456
>pdb|3HVE|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 14/144 (9%)
Query: 339 FVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR--DIEIPNIRWEV 396
F + D +++G + L A+S R + + D IE+ I V
Sbjct: 25 FREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVXV 84
Query: 397 FELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSE 456
++ +I++G + + D QD+++AAD LL LK LC + I+ EN
Sbjct: 85 XREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAEN--------- 135
Query: 457 AFHAISLRHTCILYIMEHFDKLST 480
I +R + Y + H L+T
Sbjct: 136 ---CIGIRDFALHYCLHHVHYLAT 156
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 403 FIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAIS 462
++ D+TL+ + + A+++L K + E+T D++ NV ++ E +A
Sbjct: 666 MMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTAKGDVAALNVDALTENQKA----- 720
Query: 463 LRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKALT 504
LR I + D + R + I I+ E+ N AKA T
Sbjct: 721 LRRDVHKTIAKVTDDIGRRQTFNTAIAAIM-ELMNKLAKAPT 761
>pdb|1XQS|A Chain A, Crystal Structure Of The Hspbp1 Core Domain Complexed With
The Fragment Of Hsp70 Atpase Domain
pdb|1XQS|B Chain B, Crystal Structure Of The Hspbp1 Core Domain Complexed With
The Fragment Of Hsp70 Atpase Domain
Length = 280
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 37/80 (46%)
Query: 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 63
G L+ ++ K++ +A L+ L + E+K + + L+ ++R+E S H
Sbjct: 152 GFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHE 211
Query: 64 EAVGVIGNLVHSSPNIKKEV 83
+G + +LV P +E
Sbjct: 212 HVLGALCSLVTDFPQGVREC 231
>pdb|1TE4|A Chain A, Solution Structure Of Mth187. Ontario Centre For
Structural Proteomics Target Mth0187_1_111; Northeast
Structural Genomics Target Tt740
Length = 131
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 130 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 189
A PL+E L + D ++R +A+ +G + + PL+KLL+ +G ++
Sbjct: 43 AFEPLLESLSNEDWRIRGAAAWIIGNFQDER----------AVEPLIKLLEDDSGFVRSG 92
Query: 190 AAFAL 194
AA +L
Sbjct: 93 AARSL 97
>pdb|3LTX|A Chain A, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|B Chain B, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|C Chain C, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|D Chain D, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
Length = 243
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 15/146 (10%)
Query: 344 TLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRF 403
+LSD L+E + LL + AFR++ GG A D+ + W E M
Sbjct: 66 SLSDQVHLIE-----CCWMELLLLNCAFRSIEHGGKSLAFAPDLVLDRSSWSTVE--MTE 118
Query: 404 IYTGSVDVTLDIAQDLLRAADQYLLEGL-------KRLCEYTIAQDISLENVSSMYELSE 456
I+ V+ + Q+ L + LL+ + +RL Y ++ + ++ + ++
Sbjct: 119 IFEQVAAVSEQMMQNHLHKDELLLLQAMVLVNAEVRRLASYNQIFNMQQSLLDAIVDTAQ 178
Query: 457 AFHAISLRHT-CILYIMEHFDKLSTR 481
+H ++RH +L ++ H + R
Sbjct: 179 KYHPDNVRHVPAVLLLLTHIRQAGER 204
>pdb|1XQR|A Chain A, Crystal Structure Of The Hspbp1 Core Domain
pdb|1XQR|B Chain B, Crystal Structure Of The Hspbp1 Core Domain
Length = 296
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%)
Query: 18 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP 77
K++ +A L+ L + E+K + + L+ ++R+E S H +G + +LV P
Sbjct: 182 KLKVKSAFLLQNLLVGHPEHKGTLCSXGXVQQLVALVRTEHSPFHEHVLGALCSLVTDFP 241
Query: 78 NIKKEV 83
+E
Sbjct: 242 QGVREC 247
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,518,945
Number of Sequences: 62578
Number of extensions: 507540
Number of successful extensions: 1697
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1282
Number of HSP's gapped (non-prelim): 288
length of query: 513
length of database: 14,973,337
effective HSP length: 103
effective length of query: 410
effective length of database: 8,527,803
effective search space: 3496399230
effective search space used: 3496399230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)