Query 010291
Match_columns 513
No_of_seqs 511 out of 2886
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 22:48:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010291.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010291hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 100.0 1.5E-33 3.3E-38 267.1 20.6 318 2-319 108-441 (514)
2 COG5064 SRP1 Karyopherin (impo 100.0 8.5E-33 1.8E-37 242.5 15.9 316 2-317 113-446 (526)
3 PLN03200 cellulose synthase-in 100.0 9.4E-30 2E-34 276.0 28.4 316 2-317 403-767 (2102)
4 KOG0166 Karyopherin (importin) 100.0 1.2E-29 2.7E-34 240.6 21.9 313 5-317 68-396 (514)
5 KOG4224 Armadillo repeat prote 100.0 1E-28 2.2E-33 218.8 18.3 286 2-323 166-455 (550)
6 KOG4224 Armadillo repeat prote 100.0 4.8E-29 1E-33 220.9 14.9 309 5-317 87-408 (550)
7 COG5064 SRP1 Karyopherin (impo 100.0 2.1E-29 4.5E-34 221.3 11.6 316 4-319 72-403 (526)
8 PHA02713 hypothetical protein; 100.0 1E-28 2.2E-33 249.5 17.0 159 337-500 17-177 (557)
9 PLN03200 cellulose synthase-in 100.0 5.3E-27 1.2E-31 254.9 29.8 314 2-315 445-812 (2102)
10 KOG4441 Proteins containing BT 100.0 4.9E-28 1.1E-32 243.2 16.6 162 337-501 28-189 (571)
11 PHA02790 Kelch-like protein; P 100.0 3.1E-28 6.8E-33 242.7 12.6 148 339-488 16-167 (480)
12 PHA03098 kelch-like protein; P 99.9 4.3E-27 9.4E-32 240.3 17.1 150 342-495 6-157 (534)
13 KOG4350 Uncharacterized conser 99.9 6E-26 1.3E-30 203.2 10.3 160 337-496 36-198 (620)
14 PF05804 KAP: Kinesin-associat 99.8 1E-19 2.2E-24 183.3 20.2 308 17-329 263-622 (708)
15 PF05804 KAP: Kinesin-associat 99.8 5.9E-18 1.3E-22 170.7 25.3 310 2-316 289-651 (708)
16 KOG2075 Topoisomerase TOP1-int 99.8 4.8E-19 1E-23 163.3 15.5 151 338-488 107-263 (521)
17 KOG4591 Uncharacterized conser 99.8 2.8E-19 6E-24 145.1 11.6 150 337-490 58-212 (280)
18 KOG4682 Uncharacterized conser 99.8 6.5E-19 1.4E-23 158.4 11.9 155 335-490 59-217 (488)
19 PF00651 BTB: BTB/POZ domain; 99.8 2.3E-19 5E-24 142.8 7.7 105 338-442 3-110 (111)
20 KOG2122 Beta-catenin-binding p 99.8 3.4E-17 7.4E-22 167.9 18.1 315 2-317 234-604 (2195)
21 KOG4199 Uncharacterized conser 99.7 1.1E-15 2.4E-20 135.2 23.9 310 3-317 104-447 (461)
22 KOG1048 Neural adherens juncti 99.7 4.9E-17 1.1E-21 160.1 16.6 309 5-319 235-600 (717)
23 smart00225 BTB Broad-Complex, 99.7 6.9E-17 1.5E-21 123.2 9.3 90 347-436 1-90 (90)
24 KOG0783 Uncharacterized conser 99.7 6.9E-17 1.5E-21 157.6 10.2 162 343-504 708-876 (1267)
25 KOG1048 Neural adherens juncti 99.7 7.3E-16 1.6E-20 152.0 16.6 283 3-315 275-642 (717)
26 KOG4500 Rho/Rac GTPase guanine 99.6 2E-14 4.4E-19 131.3 19.7 278 2-313 86-430 (604)
27 PF10508 Proteasom_PSMB: Prote 99.6 3.2E-14 6.8E-19 142.5 21.9 278 4-315 78-367 (503)
28 PF04826 Arm_2: Armadillo-like 99.6 1.8E-13 4E-18 122.6 18.7 191 3-200 12-206 (254)
29 KOG4500 Rho/Rac GTPase guanine 99.6 6E-14 1.3E-18 128.3 15.5 306 17-323 56-399 (604)
30 PF04826 Arm_2: Armadillo-like 99.5 1.5E-13 3.3E-18 123.2 14.7 193 42-273 9-205 (254)
31 PRK09687 putative lyase; Provi 99.5 8.3E-13 1.8E-17 121.4 18.2 252 4-310 24-278 (280)
32 cd00020 ARM Armadillo/beta-cat 99.5 5.8E-13 1.3E-17 107.5 14.5 118 40-157 2-119 (120)
33 PRK09687 putative lyase; Provi 99.5 1.4E-12 2.9E-17 120.0 16.4 223 4-270 55-279 (280)
34 cd00020 ARM Armadillo/beta-cat 99.5 1.2E-12 2.6E-17 105.7 13.9 114 2-115 6-119 (120)
35 KOG4199 Uncharacterized conser 99.5 4.6E-11 9.9E-16 106.3 23.4 273 4-277 146-448 (461)
36 PF10508 Proteasom_PSMB: Prote 99.5 1.4E-11 2.9E-16 123.6 22.8 293 2-324 118-430 (503)
37 PRK13800 putative oxidoreducta 99.4 1.3E-10 2.8E-15 125.1 24.7 255 3-310 621-895 (897)
38 cd00256 VATPase_H VATPase_H, r 99.4 1.2E-10 2.5E-15 111.5 20.7 310 5-316 55-427 (429)
39 KOG1222 Kinesin associated pro 99.3 2.7E-11 5.8E-16 112.7 12.3 312 17-333 277-640 (791)
40 KOG2122 Beta-catenin-binding p 99.3 3E-11 6.4E-16 125.4 12.3 240 3-275 339-603 (2195)
41 KOG2023 Nuclear transport rece 99.3 1E-10 2.3E-15 112.8 14.2 271 45-316 128-465 (885)
42 KOG2160 Armadillo/beta-catenin 99.2 1.1E-09 2.5E-14 99.6 19.5 185 14-199 94-282 (342)
43 PF01602 Adaptin_N: Adaptin N 99.1 4E-09 8.7E-14 108.4 19.6 288 3-315 42-334 (526)
44 KOG2171 Karyopherin (importin) 99.1 6.2E-07 1.3E-11 93.1 34.5 388 6-441 351-799 (1075)
45 PF03224 V-ATPase_H_N: V-ATPas 99.1 1.1E-09 2.4E-14 103.6 13.3 247 25-305 32-305 (312)
46 KOG3678 SARM protein (with ste 99.1 3.5E-09 7.6E-14 98.5 16.0 268 2-315 179-453 (832)
47 KOG0511 Ankyrin repeat protein 99.1 6.8E-10 1.5E-14 100.0 10.9 136 355-491 301-446 (516)
48 KOG2160 Armadillo/beta-catenin 99.1 9.4E-09 2E-13 93.7 17.9 163 2-164 123-288 (342)
49 KOG2973 Uncharacterized conser 99.1 9.1E-09 2E-13 91.0 16.6 299 2-319 2-320 (353)
50 KOG1222 Kinesin associated pro 99.1 1.4E-08 3E-13 95.0 17.7 312 3-319 304-668 (791)
51 KOG2759 Vacuolar H+-ATPase V1 99.1 1.8E-08 3.9E-13 93.1 18.2 300 6-316 117-440 (442)
52 KOG0168 Putative ubiquitin fus 99.0 1.2E-08 2.6E-13 101.6 16.3 259 6-296 170-437 (1051)
53 PF01602 Adaptin_N: Adaptin N 99.0 5.6E-09 1.2E-13 107.4 14.5 286 5-316 81-371 (526)
54 KOG1293 Proteins containing ar 99.0 4.3E-08 9.2E-13 95.4 19.1 307 11-317 17-493 (678)
55 KOG0946 ER-Golgi vesicle-tethe 98.9 8E-07 1.7E-11 88.3 25.4 289 4-317 23-349 (970)
56 PRK13800 putative oxidoreducta 98.9 1.9E-07 4.2E-12 100.8 23.3 228 3-270 652-896 (897)
57 KOG0168 Putative ubiquitin fus 98.9 2E-07 4.4E-12 93.1 20.0 193 3-200 211-414 (1051)
58 PF03224 V-ATPase_H_N: V-ATPas 98.9 5.8E-08 1.3E-12 91.9 15.6 207 6-214 58-286 (312)
59 KOG2023 Nuclear transport rece 98.8 1.1E-07 2.3E-12 92.5 15.6 158 4-164 129-291 (885)
60 PTZ00429 beta-adaptin; Provisi 98.8 4.7E-07 1E-11 93.8 21.2 217 48-315 108-327 (746)
61 KOG2171 Karyopherin (importin) 98.8 1.5E-07 3.2E-12 97.6 17.0 307 4-317 119-464 (1075)
62 KOG1293 Proteins containing ar 98.8 8.1E-07 1.8E-11 86.8 19.8 146 56-201 388-535 (678)
63 PTZ00429 beta-adaptin; Provisi 98.8 8.7E-07 1.9E-11 91.8 21.2 287 5-315 107-398 (746)
64 KOG4413 26S proteasome regulat 98.7 2.3E-06 4.9E-11 76.7 18.8 282 6-315 85-378 (524)
65 cd00256 VATPase_H VATPase_H, r 98.7 1.1E-06 2.3E-11 84.6 17.6 231 45-308 53-302 (429)
66 KOG1241 Karyopherin (importin) 98.6 1.1E-05 2.3E-10 80.3 22.7 273 4-317 126-438 (859)
67 KOG0212 Uncharacterized conser 98.6 2.2E-06 4.7E-11 82.2 15.0 314 2-318 83-410 (675)
68 KOG3678 SARM protein (with ste 98.5 1.8E-06 3.9E-11 80.9 12.9 176 36-214 171-351 (832)
69 KOG1517 Guanine nucleotide bin 98.5 4.8E-06 1E-10 85.3 16.7 181 20-200 487-672 (1387)
70 TIGR02270 conserved hypothetic 98.5 1.3E-05 2.7E-10 77.8 19.0 238 4-315 55-297 (410)
71 KOG4646 Uncharacterized conser 98.5 2.5E-06 5.4E-11 66.2 11.0 120 14-135 28-147 (173)
72 KOG2759 Vacuolar H+-ATPase V1 98.5 1.5E-05 3.3E-10 74.2 17.2 229 8-272 161-437 (442)
73 KOG1517 Guanine nucleotide bin 98.4 5.3E-06 1.1E-10 85.0 15.1 200 2-201 511-734 (1387)
74 KOG0946 ER-Golgi vesicle-tethe 98.4 4E-05 8.7E-10 76.7 20.1 215 46-296 23-265 (970)
75 KOG2734 Uncharacterized conser 98.4 3E-05 6.6E-10 72.4 18.2 259 22-315 103-401 (536)
76 KOG2716 Polymerase delta-inter 98.4 2.1E-06 4.6E-11 74.5 10.0 94 348-442 7-104 (230)
77 COG5369 Uncharacterized conser 98.4 7.4E-06 1.6E-10 78.2 14.0 188 21-208 407-603 (743)
78 KOG0783 Uncharacterized conser 98.4 2.9E-07 6.4E-12 91.5 4.7 67 343-409 556-634 (1267)
79 KOG1062 Vesicle coat complex A 98.3 2.1E-05 4.7E-10 78.8 16.5 268 8-315 112-415 (866)
80 KOG2838 Uncharacterized conser 98.3 1.4E-06 2.9E-11 75.6 7.0 98 355-452 261-397 (401)
81 TIGR02270 conserved hypothetic 98.3 7.3E-05 1.6E-09 72.5 19.3 122 45-199 54-176 (410)
82 KOG4646 Uncharacterized conser 98.3 1.4E-05 3E-10 62.1 11.1 104 97-201 27-130 (173)
83 KOG4413 26S proteasome regulat 98.3 0.00011 2.4E-09 66.2 17.7 288 3-323 128-448 (524)
84 PF10165 Ric8: Guanine nucleot 98.3 0.00019 4.2E-09 71.0 21.0 285 24-316 2-339 (446)
85 PF00514 Arm: Armadillo/beta-c 98.2 2.9E-06 6.3E-11 53.0 4.5 41 34-74 1-41 (41)
86 KOG1061 Vesicle coat complex A 98.2 5.3E-05 1.1E-09 76.0 15.0 291 5-319 123-420 (734)
87 KOG2973 Uncharacterized conser 98.2 0.00024 5.2E-09 63.6 17.1 205 4-214 45-288 (353)
88 PF14664 RICTOR_N: Rapamycin-i 98.1 0.0007 1.5E-08 65.0 21.7 251 27-315 7-270 (371)
89 KOG0213 Splicing factor 3b, su 98.1 2.5E-05 5.4E-10 77.5 11.8 257 48-317 802-1068(1172)
90 KOG1062 Vesicle coat complex A 98.1 0.00047 1E-08 69.5 20.6 257 4-314 143-451 (866)
91 COG5215 KAP95 Karyopherin (imp 98.1 0.00021 4.6E-09 69.1 17.5 296 9-317 100-440 (858)
92 PF00514 Arm: Armadillo/beta-c 98.1 6.3E-06 1.4E-10 51.5 4.8 40 76-115 1-40 (41)
93 PF05536 Neurochondrin: Neuroc 98.1 0.00033 7.2E-09 71.0 19.5 239 46-315 6-262 (543)
94 COG1413 FOG: HEAT repeat [Ener 98.1 0.00033 7.1E-09 67.5 18.9 155 4-201 44-211 (335)
95 KOG1241 Karyopherin (importin) 98.1 0.00025 5.4E-09 71.0 17.5 287 2-315 318-627 (859)
96 KOG1059 Vesicle coat complex A 98.1 0.00061 1.3E-08 67.9 19.9 192 6-209 147-374 (877)
97 COG5181 HSH155 U2 snRNP splice 98.1 2.3E-05 5E-10 76.1 10.0 262 46-317 605-873 (975)
98 PF10165 Ric8: Guanine nucleot 98.1 0.00017 3.7E-09 71.4 16.0 246 14-276 43-340 (446)
99 KOG1242 Protein containing ada 98.0 0.00012 2.5E-09 71.9 13.5 300 8-320 139-450 (569)
100 COG1413 FOG: HEAT repeat [Ener 98.0 0.00074 1.6E-08 65.0 19.1 156 4-200 75-243 (335)
101 PF13646 HEAT_2: HEAT repeats; 98.0 2.1E-05 4.5E-10 59.0 6.6 86 5-112 1-88 (88)
102 COG5231 VMA13 Vacuolar H+-ATPa 98.0 0.0002 4.3E-09 64.3 13.3 254 53-314 157-428 (432)
103 KOG0212 Uncharacterized conser 98.0 0.00018 4E-09 69.4 14.0 266 4-314 168-444 (675)
104 PF12348 CLASP_N: CLASP N term 98.0 0.00016 3.6E-09 65.3 13.5 189 5-199 5-206 (228)
105 PF14664 RICTOR_N: Rapamycin-i 98.0 0.00046 1E-08 66.2 16.9 168 7-180 29-198 (371)
106 PF09759 Atx10homo_assoc: Spin 98.0 5E-05 1.1E-09 57.2 8.0 67 20-86 3-71 (102)
107 KOG1061 Vesicle coat complex A 98.0 7.7E-05 1.7E-09 74.9 11.4 184 2-200 48-232 (734)
108 COG5240 SEC21 Vesicle coat com 97.9 0.0014 3.1E-08 63.7 19.1 268 12-315 273-556 (898)
109 PF07707 BACK: BTB And C-termi 97.9 2.3E-05 5E-10 60.8 6.1 49 448-496 1-49 (103)
110 KOG2259 Uncharacterized conser 97.9 0.00011 2.4E-09 72.2 11.5 216 8-271 203-473 (823)
111 COG5369 Uncharacterized conser 97.9 0.00015 3.2E-09 69.6 11.9 192 61-277 405-598 (743)
112 KOG2734 Uncharacterized conser 97.9 0.0014 3E-08 61.8 17.7 211 3-214 125-364 (536)
113 KOG1824 TATA-binding protein-i 97.9 0.00023 5E-09 72.8 13.3 271 7-317 9-289 (1233)
114 PF02214 BTB_2: BTB/POZ domain 97.9 1.5E-05 3.2E-10 60.6 3.8 87 348-435 1-94 (94)
115 PF05536 Neurochondrin: Neuroc 97.8 0.0012 2.7E-08 66.9 18.0 195 4-201 6-215 (543)
116 PF13646 HEAT_2: HEAT repeats; 97.8 7.8E-05 1.7E-09 55.9 7.1 86 47-154 1-88 (88)
117 KOG1987 Speckle-type POZ prote 97.8 1.5E-05 3.4E-10 75.1 3.9 131 354-484 109-244 (297)
118 PF12348 CLASP_N: CLASP N term 97.8 9.9E-05 2.2E-09 66.7 8.6 184 97-318 17-210 (228)
119 KOG1059 Vesicle coat complex A 97.8 0.0014 3E-08 65.4 16.4 99 12-122 118-216 (877)
120 KOG1060 Vesicle coat complex A 97.8 0.0035 7.5E-08 63.4 19.2 282 9-317 114-461 (968)
121 KOG1077 Vesicle coat complex A 97.7 0.0013 2.9E-08 65.4 15.8 102 10-121 118-221 (938)
122 PF09759 Atx10homo_assoc: Spin 97.7 0.00018 4E-09 54.2 7.7 67 61-127 2-70 (102)
123 KOG3473 RNA polymerase II tran 97.7 0.00013 2.7E-09 52.6 5.8 74 353-427 25-111 (112)
124 KOG1060 Vesicle coat complex A 97.6 0.0019 4.2E-08 65.1 15.2 230 47-314 110-350 (968)
125 KOG1242 Protein containing ada 97.6 0.0059 1.3E-07 60.4 17.9 298 4-317 97-404 (569)
126 KOG0213 Splicing factor 3b, su 97.6 0.0013 2.9E-08 65.8 13.3 303 8-318 641-958 (1172)
127 KOG1824 TATA-binding protein-i 97.6 0.0022 4.8E-08 66.0 14.9 291 15-315 582-887 (1233)
128 PF13513 HEAT_EZ: HEAT-like re 97.6 0.00014 3E-09 48.8 4.4 55 17-72 1-55 (55)
129 KOG1240 Protein kinase contain 97.5 0.0033 7.2E-08 66.5 15.9 259 15-314 435-725 (1431)
130 smart00875 BACK BTB And C-term 97.5 0.00014 3E-09 56.2 4.8 47 448-494 1-47 (101)
131 PF13513 HEAT_EZ: HEAT-like re 97.5 0.00018 3.9E-09 48.3 4.6 55 101-156 1-55 (55)
132 KOG3036 Protein involved in ce 97.5 0.014 3.1E-07 50.8 16.8 147 20-167 96-256 (293)
133 KOG2838 Uncharacterized conser 97.5 0.00019 4.1E-09 62.6 5.6 88 342-429 127-219 (401)
134 smart00185 ARM Armadillo/beta- 97.5 0.00031 6.8E-09 43.7 5.0 39 35-73 2-40 (41)
135 KOG0915 Uncharacterized conser 97.5 0.0051 1.1E-07 66.6 16.6 298 16-317 970-1309(1702)
136 COG5096 Vesicle coat complex, 97.4 0.0048 1E-07 63.5 15.5 168 12-200 28-196 (757)
137 smart00512 Skp1 Found in Skp1 97.4 0.00089 1.9E-08 51.8 7.8 80 348-428 4-104 (104)
138 PF11822 DUF3342: Domain of un 97.4 0.00047 1E-08 62.9 7.1 89 355-443 14-104 (317)
139 COG5181 HSH155 U2 snRNP splice 97.4 0.0014 2.9E-08 64.3 10.4 187 1-201 686-872 (975)
140 KOG2259 Uncharacterized conser 97.4 0.0013 2.9E-08 64.9 10.2 186 6-201 237-477 (823)
141 smart00185 ARM Armadillo/beta- 97.4 0.00057 1.2E-08 42.5 5.2 39 119-157 2-40 (41)
142 KOG1789 Endocytosis protein RM 97.3 0.023 5.1E-07 59.5 18.6 111 3-116 1771-1883(2235)
143 PF12717 Cnd1: non-SMC mitotic 97.3 0.011 2.3E-07 50.9 14.0 92 16-117 1-93 (178)
144 KOG0567 HEAT repeat-containing 97.3 0.016 3.5E-07 51.2 14.6 234 5-312 5-278 (289)
145 COG5215 KAP95 Karyopherin (imp 97.3 0.0066 1.4E-07 59.2 13.3 299 12-313 375-710 (858)
146 PF11841 DUF3361: Domain of un 97.2 0.0064 1.4E-07 49.9 11.1 122 38-160 4-133 (160)
147 KOG1789 Endocytosis protein RM 97.2 0.1 2.2E-06 55.0 21.8 300 19-324 1741-2086(2235)
148 KOG1077 Vesicle coat complex A 97.2 0.019 4.2E-07 57.5 16.2 259 8-314 151-433 (938)
149 COG5231 VMA13 Vacuolar H+-ATPa 97.2 0.013 2.9E-07 53.0 13.5 226 12-272 158-427 (432)
150 KOG1724 SCF ubiquitin ligase, 97.1 0.0036 7.8E-08 51.8 9.0 90 353-444 13-128 (162)
151 PF04078 Rcd1: Cell differenti 97.1 0.013 2.9E-07 52.1 12.9 193 15-208 7-227 (262)
152 COG5096 Vesicle coat complex, 97.1 0.014 3E-07 60.3 14.4 140 5-159 57-196 (757)
153 PF08569 Mo25: Mo25-like; Int 97.1 0.043 9.3E-07 51.9 16.7 200 3-205 76-289 (335)
154 KOG1240 Protein kinase contain 97.1 0.0072 1.6E-07 64.0 12.2 232 3-273 462-725 (1431)
155 PF04078 Rcd1: Cell differenti 97.0 0.0085 1.8E-07 53.3 11.0 176 20-197 67-260 (262)
156 PF11698 V-ATPase_H_C: V-ATPas 97.0 0.0014 3.1E-08 50.8 5.4 71 5-75 45-116 (119)
157 KOG1943 Beta-tubulin folding c 97.0 0.031 6.7E-07 58.9 15.9 255 44-312 340-609 (1133)
158 PF12755 Vac14_Fab1_bd: Vacuol 97.0 0.0037 7.9E-08 47.2 7.0 92 104-197 3-94 (97)
159 PF12755 Vac14_Fab1_bd: Vacuol 97.0 0.0084 1.8E-07 45.3 8.9 90 20-114 3-94 (97)
160 KOG3036 Protein involved in ce 96.9 0.26 5.5E-06 43.3 19.7 190 17-207 38-255 (293)
161 KOG4535 HEAT and armadillo rep 96.9 0.0023 4.9E-08 61.0 6.6 186 57-274 403-604 (728)
162 KOG4535 HEAT and armadillo rep 96.8 0.0038 8.3E-08 59.5 7.0 267 13-312 305-601 (728)
163 PF03931 Skp1_POZ: Skp1 family 96.8 0.0052 1.1E-07 42.2 6.0 51 353-406 9-59 (62)
164 PF08569 Mo25: Mo25-like; Int 96.7 0.014 3E-07 55.2 10.5 205 81-317 70-286 (335)
165 PF11841 DUF3361: Domain of un 96.7 0.041 9E-07 45.2 11.5 120 2-122 10-137 (160)
166 PF12717 Cnd1: non-SMC mitotic 96.7 0.064 1.4E-06 46.1 13.4 92 100-200 1-93 (178)
167 KOG1058 Vesicle coat complex C 96.7 0.032 6.9E-07 56.4 12.6 231 10-274 106-347 (948)
168 PF11698 V-ATPase_H_C: V-ATPas 96.6 0.0045 9.7E-08 48.1 5.2 72 45-116 43-115 (119)
169 PF05918 API5: Apoptosis inhib 96.6 0.069 1.5E-06 53.6 14.4 123 15-155 34-159 (556)
170 KOG2062 26S proteasome regulat 96.5 0.093 2E-06 53.2 14.8 130 132-314 522-653 (929)
171 KOG1078 Vesicle coat complex C 96.5 0.14 3E-06 52.4 15.8 65 245-313 467-531 (865)
172 KOG0567 HEAT repeat-containing 96.5 0.18 4E-06 44.8 14.7 194 47-315 38-250 (289)
173 KOG1665 AFH1-interacting prote 96.5 0.0074 1.6E-07 51.4 6.0 90 348-437 11-105 (302)
174 KOG0915 Uncharacterized conser 96.5 0.2 4.3E-06 55.1 17.7 179 5-186 1000-1188(1702)
175 KOG0211 Protein phosphatase 2A 96.4 0.05 1.1E-06 56.8 13.0 297 7-314 359-664 (759)
176 KOG2714 SETA binding protein S 96.4 0.011 2.4E-07 55.7 7.3 87 346-433 11-102 (465)
177 PF13764 E3_UbLigase_R4: E3 ub 96.4 0.45 9.8E-06 50.4 19.7 249 2-255 116-419 (802)
178 KOG2032 Uncharacterized conser 96.4 0.078 1.7E-06 51.2 12.8 257 44-314 253-531 (533)
179 KOG1058 Vesicle coat complex C 96.3 0.088 1.9E-06 53.5 13.4 287 3-315 134-464 (948)
180 KOG0211 Protein phosphatase 2A 96.2 0.15 3.2E-06 53.4 15.2 225 4-271 438-662 (759)
181 KOG2062 26S proteasome regulat 96.2 0.069 1.5E-06 54.1 12.1 157 9-188 525-683 (929)
182 PF04063 DUF383: Domain of unk 96.2 0.02 4.4E-07 49.3 7.2 112 98-209 6-142 (192)
183 PF08045 CDC14: Cell division 96.1 0.096 2.1E-06 47.1 11.3 99 17-115 105-206 (257)
184 PF06025 DUF913: Domain of Unk 96.1 0.37 8E-06 46.7 16.1 162 22-183 3-209 (379)
185 PF05004 IFRD: Interferon-rela 96.1 0.53 1.1E-05 44.4 16.7 188 7-198 47-256 (309)
186 PF02985 HEAT: HEAT repeat; I 95.9 0.015 3.2E-07 33.4 3.7 28 47-74 2-29 (31)
187 PF04063 DUF383: Domain of unk 95.9 0.079 1.7E-06 45.7 9.7 112 56-169 6-143 (192)
188 PF12719 Cnd3: Nuclear condens 95.9 0.67 1.5E-05 43.6 17.0 150 45-202 26-188 (298)
189 KOG4151 Myosin assembly protei 95.9 0.15 3.3E-06 52.3 13.1 191 2-198 503-698 (748)
190 PF12719 Cnd3: Nuclear condens 95.9 0.13 2.7E-06 48.5 12.0 169 5-182 28-209 (298)
191 PF08045 CDC14: Cell division 95.9 0.21 4.6E-06 44.9 12.5 99 60-158 106-207 (257)
192 KOG1943 Beta-tubulin folding c 95.8 0.25 5.5E-06 52.4 14.5 208 2-218 340-589 (1133)
193 PF02985 HEAT: HEAT repeat; I 95.8 0.016 3.4E-07 33.3 3.3 28 5-32 2-29 (31)
194 COG5240 SEC21 Vesicle coat com 95.6 1.8 3.9E-05 43.1 18.4 101 89-196 266-366 (898)
195 PF05004 IFRD: Interferon-rela 95.5 0.87 1.9E-05 42.9 15.7 192 47-272 45-256 (309)
196 COG5116 RPN2 26S proteasome re 95.4 0.22 4.7E-06 49.1 11.5 155 9-186 522-678 (926)
197 PF11701 UNC45-central: Myosin 95.3 0.12 2.7E-06 43.2 8.5 145 47-196 5-156 (157)
198 KOG1967 DNA repair/transcripti 95.3 0.2 4.3E-06 52.3 11.3 189 47-270 817-1021(1030)
199 PF05918 API5: Apoptosis inhib 95.2 0.19 4.2E-06 50.5 10.9 129 49-195 27-158 (556)
200 KOG1991 Nuclear transport rece 95.2 2.3 5E-05 45.2 18.6 134 3-139 410-557 (1010)
201 KOG4151 Myosin assembly protei 95.2 0.17 3.7E-06 52.0 10.4 139 19-157 558-698 (748)
202 KOG2999 Regulator of Rac1, req 95.1 0.39 8.4E-06 47.3 12.1 152 6-159 86-243 (713)
203 KOG4653 Uncharacterized conser 95.1 0.85 1.8E-05 47.5 14.9 181 8-200 732-919 (982)
204 KOG0511 Ankyrin repeat protein 95.0 0.091 2E-06 48.7 7.2 88 345-434 149-237 (516)
205 PF06025 DUF913: Domain of Unk 95.0 2.6 5.7E-05 41.0 17.6 109 16-125 122-241 (379)
206 KOG4464 Signaling protein RIC- 94.8 2.3 4.9E-05 40.5 15.7 83 58-140 110-198 (532)
207 KOG2025 Chromosome condensatio 94.8 0.55 1.2E-05 47.7 12.4 103 3-111 85-188 (892)
208 KOG2715 Uncharacterized conser 94.7 0.067 1.5E-06 43.4 4.9 98 346-443 21-122 (210)
209 KOG2956 CLIP-associating prote 94.7 0.69 1.5E-05 44.7 12.3 143 5-158 331-477 (516)
210 KOG2611 Neurochondrin/leucine- 94.6 2.2 4.8E-05 41.5 15.5 132 50-183 16-165 (698)
211 PF06371 Drf_GBD: Diaphanous G 94.6 0.3 6.6E-06 42.3 9.5 109 47-157 68-186 (187)
212 KOG1566 Conserved protein Mo25 94.5 1.6 3.4E-05 40.1 13.7 206 81-316 73-288 (342)
213 KOG0414 Chromosome condensatio 94.5 0.37 8E-06 51.8 11.0 140 46-199 920-1064(1251)
214 PF07814 WAPL: Wings apart-lik 94.4 3.8 8.2E-05 39.7 17.4 91 5-97 23-116 (361)
215 KOG1967 DNA repair/transcripti 94.4 0.17 3.7E-06 52.7 8.3 149 3-154 867-1020(1030)
216 PF11701 UNC45-central: Myosin 94.4 0.35 7.6E-06 40.5 8.9 147 3-155 3-156 (157)
217 KOG1820 Microtubule-associated 94.4 1.4 3E-05 46.9 15.0 185 6-199 256-443 (815)
218 PF12460 MMS19_C: RNAPII trans 94.3 0.34 7.3E-06 48.1 10.3 111 47-160 273-396 (415)
219 PF14668 RICTOR_V: Rapamycin-i 94.3 0.33 7.1E-06 34.3 7.1 66 20-87 4-70 (73)
220 KOG1248 Uncharacterized conser 94.2 0.58 1.3E-05 50.4 11.9 218 56-315 665-899 (1176)
221 KOG1778 CREB binding protein/P 94.2 0.041 8.9E-07 51.1 3.2 141 346-487 27-170 (319)
222 KOG1243 Protein kinase [Genera 94.0 0.17 3.8E-06 51.2 7.3 183 3-196 330-512 (690)
223 PF13764 E3_UbLigase_R4: E3 ub 94.0 9.6 0.00021 40.8 20.1 123 41-164 113-264 (802)
224 PF12460 MMS19_C: RNAPII trans 93.9 1.2 2.6E-05 44.2 13.1 185 6-201 192-396 (415)
225 KOG2274 Predicted importin 9 [ 93.8 2.1 4.6E-05 45.0 14.4 180 13-199 460-646 (1005)
226 PF11707 Npa1: Ribosome 60S bi 93.7 4.3 9.3E-05 38.8 16.1 161 47-207 58-245 (330)
227 COG5209 RCD1 Uncharacterized p 93.6 0.66 1.4E-05 40.2 9.1 146 20-166 117-276 (315)
228 KOG1248 Uncharacterized conser 93.6 3.2 6.9E-05 45.1 15.9 178 13-199 664-856 (1176)
229 KOG4653 Uncharacterized conser 93.6 1.2 2.5E-05 46.6 12.2 221 50-314 732-964 (982)
230 KOG1566 Conserved protein Mo25 93.5 6 0.00013 36.5 15.3 200 2-202 78-289 (342)
231 KOG2025 Chromosome condensatio 93.2 1.1 2.3E-05 45.7 11.1 98 101-201 60-157 (892)
232 PF06371 Drf_GBD: Diaphanous G 93.2 0.53 1.1E-05 40.8 8.3 106 7-115 70-186 (187)
233 COG5201 SKP1 SCF ubiquitin lig 93.1 0.76 1.7E-05 35.6 7.8 90 352-444 9-123 (158)
234 PF01466 Skp1: Skp1 family, di 93.1 0.26 5.7E-06 35.5 5.2 50 411-460 11-63 (78)
235 PF10363 DUF2435: Protein of u 93.0 0.4 8.6E-06 35.8 6.1 72 5-78 5-76 (92)
236 KOG2032 Uncharacterized conser 93.0 0.92 2E-05 44.2 10.0 138 13-154 268-412 (533)
237 PF12530 DUF3730: Protein of u 92.9 6.8 0.00015 35.3 17.1 138 5-158 2-151 (234)
238 PF14668 RICTOR_V: Rapamycin-i 92.9 0.36 7.8E-06 34.1 5.4 67 146-212 4-71 (73)
239 COG5098 Chromosome condensatio 92.8 1 2.2E-05 45.8 10.3 103 5-117 935-1038(1128)
240 KOG3665 ZYG-1-like serine/thre 92.7 1.6 3.5E-05 46.1 12.3 170 110-296 494-678 (699)
241 KOG2999 Regulator of Rac1, req 92.7 2.2 4.9E-05 42.2 12.1 151 47-199 85-242 (713)
242 COG5116 RPN2 26S proteasome re 92.6 2 4.3E-05 42.7 11.7 96 87-197 551-648 (926)
243 KOG0414 Chromosome condensatio 92.6 0.9 1.9E-05 49.0 10.1 159 4-182 920-1083(1251)
244 PRK14707 hypothetical protein; 92.5 16 0.00034 42.9 19.4 295 13-310 384-693 (2710)
245 KOG1832 HIV-1 Vpr-binding prot 92.4 4.5 9.8E-05 42.6 14.3 218 77-295 536-797 (1516)
246 KOG1020 Sister chromatid cohes 92.3 3.5 7.5E-05 46.0 14.1 146 4-160 817-962 (1692)
247 KOG1020 Sister chromatid cohes 92.2 2.6 5.7E-05 46.9 13.1 142 45-199 816-960 (1692)
248 PF13251 DUF4042: Domain of un 92.1 5.3 0.00012 34.2 12.6 140 19-161 2-177 (182)
249 COG5098 Chromosome condensatio 91.9 4 8.6E-05 41.8 13.1 129 57-199 908-1037(1128)
250 KOG2956 CLIP-associating prote 91.8 11 0.00025 36.7 15.5 171 16-199 300-477 (516)
251 COG5218 YCG1 Chromosome conden 91.8 8.2 0.00018 38.8 14.7 107 2-117 90-197 (885)
252 PF12830 Nipped-B_C: Sister ch 91.5 6.6 0.00014 34.0 12.9 143 5-158 10-167 (187)
253 KOG2933 Uncharacterized conser 91.3 1.6 3.5E-05 40.0 8.9 140 5-157 90-233 (334)
254 COG5209 RCD1 Uncharacterized p 91.1 9.9 0.00021 33.2 13.4 155 62-218 117-286 (315)
255 PF10363 DUF2435: Protein of u 90.4 1 2.2E-05 33.6 5.9 84 47-140 5-88 (92)
256 PF11822 DUF3342: Domain of un 90.2 0.15 3.3E-06 46.9 1.6 54 442-495 71-125 (317)
257 KOG1243 Protein kinase [Genera 89.6 8.8 0.00019 39.5 13.3 190 84-315 327-516 (690)
258 KOG1991 Nuclear transport rece 89.5 7.5 0.00016 41.6 13.0 156 21-182 390-559 (1010)
259 KOG2137 Protein kinase [Signal 89.1 5.8 0.00013 40.9 11.7 137 127-301 387-524 (700)
260 KOG2933 Uncharacterized conser 88.9 3.3 7.1E-05 38.1 8.9 141 88-272 89-233 (334)
261 PF11865 DUF3385: Domain of un 88.7 4.4 9.5E-05 34.0 9.2 144 46-198 11-156 (160)
262 PF12031 DUF3518: Domain of un 88.7 1.5 3.3E-05 38.7 6.5 83 18-101 139-230 (257)
263 PF01347 Vitellogenin_N: Lipop 88.1 9.8 0.00021 40.1 13.6 102 89-200 433-554 (618)
264 COG5218 YCG1 Chromosome conden 88.1 5 0.00011 40.3 10.1 96 103-200 67-162 (885)
265 PF08167 RIX1: rRNA processing 87.7 6.8 0.00015 33.1 9.8 110 46-159 26-144 (165)
266 KOG0301 Phospholipase A2-activ 87.7 15 0.00033 37.6 13.3 162 15-181 556-727 (745)
267 KOG1820 Microtubule-associated 87.6 9.9 0.00021 40.7 12.8 138 13-158 305-443 (815)
268 KOG2676 Uncharacterized conser 87.4 1.1 2.4E-05 41.6 5.1 64 23-86 376-441 (478)
269 PF08324 PUL: PUL domain; Int 87.3 6.3 0.00014 36.4 10.4 155 12-168 72-241 (268)
270 KOG2274 Predicted importin 9 [ 87.0 47 0.001 35.6 19.7 153 5-160 532-691 (1005)
271 KOG1078 Vesicle coat complex C 86.7 45 0.00098 35.1 17.4 241 49-317 68-314 (865)
272 PF14726 RTTN_N: Rotatin, an a 86.5 7.3 0.00016 29.4 8.2 93 18-111 2-95 (98)
273 PRK14707 hypothetical protein; 86.4 65 0.0014 38.3 18.3 147 13-161 342-491 (2710)
274 PF08167 RIX1: rRNA processing 86.3 7.6 0.00017 32.8 9.4 108 88-199 26-143 (165)
275 KOG3665 ZYG-1-like serine/thre 86.1 7 0.00015 41.4 10.9 153 26-179 494-676 (699)
276 PF11707 Npa1: Ribosome 60S bi 86.1 32 0.0007 32.9 20.6 159 89-276 58-240 (330)
277 PF12530 DUF3730: Protein of u 85.9 16 0.00035 32.9 11.8 137 48-199 3-151 (234)
278 KOG2137 Protein kinase [Signal 85.7 5.4 0.00012 41.1 9.3 132 3-142 389-521 (700)
279 COG5656 SXM1 Importin, protein 84.8 55 0.0012 34.3 15.8 145 2-150 407-563 (970)
280 cd03568 VHS_STAM VHS domain fa 84.5 3.8 8.3E-05 33.6 6.4 71 4-74 38-110 (144)
281 PF01603 B56: Protein phosphat 84.4 36 0.00078 33.7 14.4 183 5-194 135-321 (409)
282 PF12031 DUF3518: Domain of un 84.2 2.3 5E-05 37.6 5.3 82 60-142 139-229 (257)
283 cd03569 VHS_Hrs_Vps27p VHS dom 83.8 4.3 9.3E-05 33.2 6.5 71 4-74 42-114 (142)
284 PF01347 Vitellogenin_N: Lipop 83.1 3.7 8E-05 43.3 7.5 130 7-155 435-586 (618)
285 PF04869 Uso1_p115_head: Uso1 82.8 28 0.00061 32.8 12.2 143 16-158 51-231 (312)
286 cd03561 VHS VHS domain family; 82.7 6.4 0.00014 31.8 7.1 72 4-75 38-113 (133)
287 KOG1788 Uncharacterized conser 81.8 30 0.00065 37.7 12.8 262 24-295 663-960 (2799)
288 PF10521 DUF2454: Protein of u 81.5 17 0.00037 33.9 10.4 70 46-115 120-202 (282)
289 cd03567 VHS_GGA VHS domain fam 81.2 6.1 0.00013 32.2 6.4 71 4-74 39-116 (139)
290 KOG0301 Phospholipase A2-activ 81.2 54 0.0012 33.9 13.9 171 99-307 556-739 (745)
291 PF10521 DUF2454: Protein of u 80.5 20 0.00043 33.4 10.5 70 4-73 120-202 (282)
292 KOG2611 Neurochondrin/leucine- 80.4 64 0.0014 32.0 15.8 131 7-141 15-164 (698)
293 smart00638 LPD_N Lipoprotein N 79.7 39 0.00085 35.3 13.5 132 130-311 394-542 (574)
294 smart00288 VHS Domain present 79.6 7.6 0.00016 31.4 6.5 71 4-74 38-111 (133)
295 PF08506 Cse1: Cse1; InterPro 79.4 22 0.00047 34.6 10.6 130 18-153 226-370 (370)
296 PF11865 DUF3385: Domain of un 78.9 18 0.0004 30.3 8.8 142 5-157 12-156 (160)
297 PF13251 DUF4042: Domain of un 78.3 24 0.00051 30.3 9.3 111 6-119 42-177 (182)
298 cd03561 VHS VHS domain family; 78.1 23 0.00049 28.6 8.8 71 46-116 38-112 (133)
299 PF14500 MMS19_N: Dos2-interac 77.8 58 0.0012 29.9 15.5 217 7-273 3-237 (262)
300 cd03568 VHS_STAM VHS domain fa 77.5 8.5 0.00018 31.6 6.2 71 129-199 37-110 (144)
301 smart00638 LPD_N Lipoprotein N 77.2 12 0.00027 38.9 9.0 132 5-155 395-542 (574)
302 PF08324 PUL: PUL domain; Int 76.8 4.9 0.00011 37.1 5.3 108 15-123 122-238 (268)
303 KOG1832 HIV-1 Vpr-binding prot 76.3 18 0.00038 38.5 9.2 162 37-211 593-785 (1516)
304 PF14225 MOR2-PAG1_C: Cell mor 75.9 65 0.0014 29.6 15.4 164 19-198 78-256 (262)
305 KOG4464 Signaling protein RIC- 75.0 85 0.0018 30.5 13.6 83 16-98 110-198 (532)
306 KOG0392 SNF2 family DNA-depend 74.2 48 0.001 37.0 12.0 147 4-159 78-238 (1549)
307 PF10274 ParcG: Parkin co-regu 73.8 57 0.0012 27.9 10.7 75 5-79 40-114 (183)
308 PF14726 RTTN_N: Rotatin, an a 73.3 33 0.00073 25.9 7.9 67 127-193 28-94 (98)
309 PF07707 BACK: BTB And C-termi 73.2 10 0.00023 28.7 5.5 60 417-476 2-75 (103)
310 PF14225 MOR2-PAG1_C: Cell mor 72.8 78 0.0017 29.1 18.5 68 242-313 186-253 (262)
311 KOG3840 Uncharaterized conserv 72.8 3.2 6.9E-05 37.7 2.7 86 344-429 94-185 (438)
312 PF08216 CTNNBL: Catenin-beta- 72.4 5.3 0.00011 30.6 3.4 44 20-64 63-106 (108)
313 cd03567 VHS_GGA VHS domain fam 71.9 16 0.00036 29.7 6.4 69 130-198 39-115 (139)
314 KOG2723 Uncharacterized conser 71.5 9.4 0.0002 33.6 5.2 91 348-439 11-106 (221)
315 cd03569 VHS_Hrs_Vps27p VHS dom 70.1 18 0.00039 29.6 6.4 71 129-199 41-114 (142)
316 KOG0891 DNA-dependent protein 69.9 1.1E+02 0.0025 37.3 14.7 262 11-312 489-761 (2341)
317 KOG1949 Uncharacterized conser 69.4 1.5E+02 0.0033 31.1 17.4 146 132-315 177-332 (1005)
318 PF00790 VHS: VHS domain; Int 68.3 14 0.00031 30.1 5.5 70 5-74 44-118 (140)
319 PF00651 BTB: BTB/POZ domain; 68.2 9.2 0.0002 29.4 4.3 31 444-474 80-110 (111)
320 COG5656 SXM1 Importin, protein 68.1 42 0.00092 35.1 9.5 119 44-165 407-535 (970)
321 KOG1949 Uncharacterized conser 67.7 95 0.0021 32.5 11.8 142 8-157 179-330 (1005)
322 PF14500 MMS19_N: Dos2-interac 67.0 65 0.0014 29.6 10.0 146 49-199 3-153 (262)
323 KOG2005 26S proteasome regulat 66.8 1.1E+02 0.0024 31.8 12.0 103 3-117 415-519 (878)
324 KOG2676 Uncharacterized conser 66.5 8.2 0.00018 36.2 4.0 61 65-125 376-438 (478)
325 PF12231 Rif1_N: Rap1-interact 66.3 1.3E+02 0.0029 29.3 16.0 177 12-198 2-203 (372)
326 PF01365 RYDR_ITPR: RIH domain 66.0 22 0.00047 31.3 6.7 118 36-158 34-169 (207)
327 cd08050 TAF6 TATA Binding Prot 65.2 41 0.0009 32.3 8.8 110 46-157 211-339 (343)
328 PF12830 Nipped-B_C: Sister ch 64.7 88 0.0019 27.0 10.0 108 4-117 46-168 (187)
329 PF08506 Cse1: Cse1; InterPro 64.5 1.4E+02 0.0031 29.0 12.6 128 59-194 225-370 (370)
330 KOG2075 Topoisomerase TOP1-int 64.2 17 0.00037 35.7 5.8 44 443-489 185-228 (521)
331 KOG0413 Uncharacterized conser 62.2 54 0.0012 35.5 9.2 126 59-199 945-1073(1529)
332 KOG2549 Transcription initiati 60.7 1.1E+02 0.0024 31.0 10.6 139 8-158 212-370 (576)
333 PF07814 WAPL: Wings apart-lik 59.4 77 0.0017 30.8 9.6 92 47-139 23-116 (361)
334 PF12054 DUF3535: Domain of un 58.4 93 0.002 31.2 10.1 79 17-99 101-180 (441)
335 smart00288 VHS Domain present 57.8 43 0.00092 27.0 6.4 73 88-160 38-113 (133)
336 PF10274 ParcG: Parkin co-regu 56.7 1.3E+02 0.0028 25.9 9.5 74 47-120 40-113 (183)
337 cd08050 TAF6 TATA Binding Prot 56.6 1.3E+02 0.0028 29.0 10.5 109 88-197 211-338 (343)
338 PF11791 Aconitase_B_N: Aconit 56.5 26 0.00056 28.7 4.7 45 62-117 80-124 (154)
339 KOG1525 Sister chromatid cohes 56.3 23 0.00049 40.1 5.9 148 2-158 258-405 (1266)
340 PF11864 DUF3384: Domain of un 55.3 2.4E+02 0.0052 28.5 19.5 71 244-314 250-330 (464)
341 PHA03098 kelch-like protein; P 55.0 49 0.0011 34.2 8.0 84 411-495 105-210 (534)
342 KOG1788 Uncharacterized conser 55.0 3.5E+02 0.0075 30.3 15.6 270 12-295 476-784 (2799)
343 PF14666 RICTOR_M: Rapamycin-i 53.0 62 0.0013 28.9 7.1 130 142-272 77-224 (226)
344 PF04388 Hamartin: Hamartin pr 50.8 2.3E+02 0.0049 30.3 11.9 58 100-157 81-139 (668)
345 PF08216 CTNNBL: Catenin-beta- 49.8 21 0.00045 27.4 3.1 42 63-105 64-105 (108)
346 PF01466 Skp1: Skp1 family, di 49.2 57 0.0012 23.4 5.3 38 437-476 7-44 (78)
347 KOG1822 Uncharacterized conser 49.1 5.5E+02 0.012 30.9 15.2 245 47-313 878-1126(2067)
348 cd00197 VHS_ENTH_ANTH VHS, ENT 48.4 80 0.0017 24.5 6.5 69 4-72 38-113 (115)
349 KOG4231 Intracellular membrane 48.3 27 0.00058 34.6 4.3 64 136-199 335-399 (763)
350 PF12463 DUF3689: Protein of u 48.0 2.4E+02 0.0053 26.5 11.0 122 80-201 2-175 (303)
351 PF12726 SEN1_N: SEN1 N termin 48.0 1.3E+02 0.0028 32.6 9.9 110 47-158 443-553 (727)
352 PF01365 RYDR_ITPR: RIH domain 47.6 45 0.00097 29.3 5.5 95 17-116 75-169 (207)
353 cd03565 VHS_Tom1 VHS domain fa 47.4 1E+02 0.0022 25.2 7.0 70 5-74 40-115 (141)
354 PF08389 Xpo1: Exportin 1-like 47.1 50 0.0011 26.8 5.5 50 18-73 3-53 (148)
355 PF11864 DUF3384: Domain of un 46.5 3.3E+02 0.0071 27.6 18.1 90 102-198 230-329 (464)
356 cd03572 ENTH_epsin_related ENT 46.1 1.5E+02 0.0032 23.5 8.2 70 88-157 39-118 (122)
357 PF06012 DUF908: Domain of Unk 45.5 65 0.0014 30.8 6.5 65 145-209 238-307 (329)
358 PF00790 VHS: VHS domain; Int 45.3 1.6E+02 0.0034 23.9 8.0 70 46-115 43-117 (140)
359 KOG2149 Uncharacterized conser 44.9 1.3E+02 0.0028 29.2 8.1 113 6-119 61-173 (393)
360 KOG1525 Sister chromatid cohes 43.3 66 0.0014 36.6 6.9 147 45-199 259-405 (1266)
361 KOG4682 Uncharacterized conser 43.0 26 0.00057 33.6 3.3 33 411-443 170-202 (488)
362 KOG0413 Uncharacterized conser 42.8 1.1E+02 0.0023 33.5 7.7 103 46-153 577-680 (1529)
363 PF13001 Ecm29: Proteasome sta 42.8 1.2E+02 0.0027 30.9 8.5 171 15-199 249-443 (501)
364 PF06685 DUF1186: Protein of u 42.4 2.7E+02 0.0058 25.4 13.1 94 43-144 71-169 (249)
365 PF04388 Hamartin: Hamartin pr 40.6 3.2E+02 0.007 29.2 11.2 113 3-115 4-139 (668)
366 cd03572 ENTH_epsin_related ENT 40.5 1.9E+02 0.004 23.0 9.1 85 26-115 24-118 (122)
367 PF06685 DUF1186: Protein of u 40.4 2.9E+02 0.0062 25.2 14.3 117 85-215 71-201 (249)
368 smart00567 EZ_HEAT E-Z type HE 40.4 36 0.00078 18.8 2.5 27 18-55 2-28 (30)
369 PF12726 SEN1_N: SEN1 N termin 40.2 3.9E+02 0.0084 29.0 12.1 106 92-199 446-553 (727)
370 smart00875 BACK BTB And C-term 39.9 90 0.002 23.1 5.5 57 418-474 3-73 (101)
371 PF14663 RasGEF_N_2: Rapamycin 39.8 59 0.0013 25.4 4.4 38 46-84 9-46 (115)
372 PF06012 DUF908: Domain of Unk 39.7 1.3E+02 0.0029 28.7 7.7 62 19-81 238-304 (329)
373 PF07923 N1221: N1221-like pro 39.3 56 0.0012 30.6 5.0 51 5-55 62-126 (293)
374 PF14663 RasGEF_N_2: Rapamycin 39.1 1.2E+02 0.0026 23.7 6.1 39 171-209 9-47 (115)
375 KOG2038 CAATT-binding transcri 39.1 4.1E+02 0.0089 28.5 11.0 74 88-166 305-378 (988)
376 PF11791 Aconitase_B_N: Aconit 39.0 57 0.0012 26.8 4.2 26 246-271 96-121 (154)
377 KOG2011 Sister chromatid cohes 38.7 4.8E+02 0.01 29.3 12.0 92 98-192 298-392 (1048)
378 PF12231 Rif1_N: Rap1-interact 38.7 3.8E+02 0.0083 26.1 13.0 135 16-157 59-203 (372)
379 KOG4350 Uncharacterized conser 37.7 26 0.00057 33.5 2.5 57 386-442 107-176 (620)
380 KOG4231 Intracellular membrane 37.7 26 0.00057 34.7 2.5 70 89-158 330-399 (763)
381 PF08389 Xpo1: Exportin 1-like 37.6 66 0.0014 26.1 4.8 49 101-153 100-148 (148)
382 PHA02713 hypothetical protein; 37.5 53 0.0012 34.1 5.0 34 442-475 90-123 (557)
383 PF12074 DUF3554: Domain of un 36.8 3.4E+02 0.0073 26.0 10.1 64 7-74 26-90 (339)
384 PF12765 Cohesin_HEAT: HEAT re 36.7 39 0.00085 20.8 2.4 41 110-153 2-42 (42)
385 KOG2005 26S proteasome regulat 36.5 5.4E+02 0.012 27.2 13.2 74 3-78 48-129 (878)
386 cd03565 VHS_Tom1 VHS domain fa 36.0 2.4E+02 0.0052 23.0 8.3 70 130-199 39-115 (141)
387 KOG4524 Uncharacterized conser 35.9 1E+02 0.0022 33.6 6.4 93 5-97 805-899 (1014)
388 PF12783 Sec7_N: Guanine nucle 35.0 2.7E+02 0.0058 23.4 8.1 82 124-207 68-154 (168)
389 PLN03205 ATR interacting prote 34.6 1.1E+02 0.0024 29.5 6.0 111 5-115 325-445 (652)
390 KOG0891 DNA-dependent protein 34.6 5E+02 0.011 32.3 12.3 156 45-202 565-722 (2341)
391 KOG2038 CAATT-binding transcri 34.3 6.2E+02 0.013 27.2 17.8 101 5-115 306-408 (988)
392 PF12054 DUF3535: Domain of un 34.0 5E+02 0.011 26.1 15.8 207 102-317 102-345 (441)
393 KOG0392 SNF2 family DNA-depend 32.8 1.3E+02 0.0029 33.8 6.9 106 5-115 818-924 (1549)
394 PF13001 Ecm29: Proteasome sta 32.7 1.6E+02 0.0034 30.2 7.3 98 16-116 334-443 (501)
395 PF04499 SAPS: SIT4 phosphatas 32.6 4.1E+02 0.0088 27.0 10.0 79 121-199 54-148 (475)
396 PF03130 HEAT_PBS: PBS lyase H 32.2 24 0.00053 19.1 0.8 26 19-55 1-26 (27)
397 KOG4390 Voltage-gated A-type K 31.3 4.9E+02 0.011 25.2 10.3 123 320-452 20-148 (632)
398 KOG1410 Nuclear transport rece 31.3 6.6E+02 0.014 26.6 16.5 140 7-157 9-156 (1082)
399 PF09324 DUF1981: Domain of un 31.3 2E+02 0.0043 21.1 5.8 64 42-110 14-82 (86)
400 KOG2011 Sister chromatid cohes 30.9 4.6E+02 0.01 29.4 10.5 133 56-196 298-432 (1048)
401 PF09324 DUF1981: Domain of un 30.7 1.3E+02 0.0028 22.1 4.7 66 126-195 14-84 (86)
402 KOG3713 Voltage-gated K+ chann 30.4 2.9E+02 0.0062 27.7 8.2 95 345-442 30-140 (477)
403 PF08713 DNA_alkylation: DNA a 29.9 2.1E+02 0.0045 25.0 7.0 74 6-86 123-196 (213)
404 KOG1992 Nuclear export recepto 29.3 6.4E+02 0.014 27.4 10.7 123 19-158 309-435 (960)
405 PHA02790 Kelch-like protein; P 28.9 45 0.00098 33.9 2.8 32 443-474 88-119 (480)
406 PF08713 DNA_alkylation: DNA a 28.7 2E+02 0.0042 25.2 6.6 76 46-128 121-196 (213)
407 KOG2549 Transcription initiati 28.6 6.6E+02 0.014 25.8 12.6 138 50-198 212-369 (576)
408 KOG2149 Uncharacterized conser 28.5 4.4E+02 0.0096 25.7 8.9 111 47-158 60-170 (393)
409 PF14631 FancD2: Fanconi anaem 27.5 2.6E+02 0.0057 32.8 8.5 110 45-160 431-544 (1426)
410 KOG2199 Signal transducing ada 27.0 2.6E+02 0.0056 27.1 6.9 71 129-199 45-118 (462)
411 PF04499 SAPS: SIT4 phosphatas 26.9 4.5E+02 0.0098 26.7 9.3 38 79-116 54-92 (475)
412 PF07571 DUF1546: Protein of u 26.8 1.9E+02 0.0041 21.5 5.1 59 98-157 17-77 (92)
413 PF12783 Sec7_N: Guanine nucle 26.4 3.5E+02 0.0077 22.6 7.5 76 6-84 76-156 (168)
414 COG5537 IRR1 Cohesin [Cell div 24.1 6.3E+02 0.014 26.3 9.3 135 14-158 286-422 (740)
415 PF08767 CRM1_C: CRM1 C termin 23.9 6.3E+02 0.014 24.0 10.1 140 18-160 42-196 (319)
416 KOG2199 Signal transducing ada 23.8 2.5E+02 0.0054 27.2 6.2 70 4-73 46-117 (462)
417 COG5537 IRR1 Cohesin [Cell div 23.8 7.2E+02 0.016 25.9 9.6 135 56-199 286-422 (740)
418 PF08767 CRM1_C: CRM1 C termin 23.5 6.4E+02 0.014 23.9 10.8 137 60-199 42-194 (319)
419 cd00197 VHS_ENTH_ANTH VHS, ENT 23.1 3.6E+02 0.0077 20.8 6.8 69 88-156 38-113 (115)
420 PF08454 RIH_assoc: RyR and IP 22.9 3.6E+02 0.0079 20.8 6.8 81 17-97 7-106 (109)
421 PLN03076 ARF guanine nucleotid 22.8 8.8E+02 0.019 29.5 11.6 155 38-197 1126-1297(1780)
422 KOG1087 Cytosolic sorting prot 22.4 1.9E+02 0.0042 29.1 5.6 65 5-69 40-107 (470)
423 PF02519 Auxin_inducible: Auxi 22.4 2.6E+02 0.0057 21.2 5.1 55 347-404 40-99 (100)
424 PF12463 DUF3689: Protein of u 22.4 6.6E+02 0.014 23.7 11.6 77 3-79 95-178 (303)
425 PF08064 UME: UME (NUC010) dom 22.0 3.7E+02 0.008 20.6 7.0 67 4-75 12-84 (107)
426 PF07571 DUF1546: Protein of u 21.1 3E+02 0.0065 20.4 5.2 57 141-197 18-76 (92)
427 KOG1822 Uncharacterized conser 20.8 1.6E+03 0.034 27.4 16.4 128 8-139 881-1010(2067)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-33 Score=267.06 Aligned_cols=318 Identities=23% Similarity=0.315 Sum_probs=276.8
Q ss_pred CCChhHHHHhhcc-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 010291 2 EGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 80 (513)
Q Consensus 2 ~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 80 (513)
.|.+|.+|+.|.. .++.+|.+|+|+|.|++.++.+....+++.|++|.++.++.+++.++++.|+|+|+|++.+++.+|
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~R 187 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCR 187 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHH
Confidence 5899999999974 569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCChHHHHHhhcCCCh-HHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291 81 KEVLAAGALQPVIGLLSSCCS-ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 159 (513)
Q Consensus 81 ~~~~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~ 159 (513)
+.++..|+++.|+.++...+. ...+.+.|+|.|+|++..+....-.-..++|.|..++.+.|+++...|+|+|++|+.+
T Consensus 188 d~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg 267 (514)
T KOG0166|consen 188 DYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG 267 (514)
T ss_pred HHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999998775 7889999999999988743333333457899999999999999999999999999977
Q ss_pred cccc-hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHH-HHhhcCcccccchhhhhhhh--H--HHH---
Q 010291 160 MHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD-FIRVGGVQKLQDGEFIVQAT--K--DCV--- 230 (513)
Q Consensus 160 ~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~i~~L~~~~~~~~~~--~--~~~--- 230 (513)
...+ ..+++.|.++.|+.+|.+.+..++..|+++++|++...+.+.+ ++..|+++.|.......... + .||
T Consensus 268 ~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iS 347 (514)
T KOG0166|consen 268 SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTIS 347 (514)
T ss_pred ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHH
Confidence 7654 5677899999999999999999999999999999986666655 45889999887655533222 1 333
Q ss_pred ---HHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCC--cceeeecCCchHHHHhhhcCCCcchhhhH
Q 010291 231 ---AKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGSTNPKQQLDG 305 (513)
Q Consensus 231 ---~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~--~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 305 (513)
+++.++++.+.+.+++|.|+.+|++.+...|+.|+|+++|++.+.. .-..+++.|.|+.|..+|...+..+...+
T Consensus 348 NItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~ 427 (514)
T KOG0166|consen 348 NITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVA 427 (514)
T ss_pred HhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHH
Confidence 4456788999999999999999999999999999999999987644 45589999999999999988888888888
Q ss_pred HHHHHHhhhccccc
Q 010291 306 AVALFKLANKATTL 319 (513)
Q Consensus 306 ~~~L~~l~~~~~~~ 319 (513)
..++.++....+..
T Consensus 428 Ld~l~nil~~~e~~ 441 (514)
T KOG0166|consen 428 LDGLENILKVGEAE 441 (514)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999988765544
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=8.5e-33 Score=242.49 Aligned_cols=316 Identities=21% Similarity=0.280 Sum_probs=268.3
Q ss_pred CCChhHHHHhh-ccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 010291 2 EGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 80 (513)
Q Consensus 2 ~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 80 (513)
+|++|.++++| ++...-.+.+|+|+|.|+++|.......+++.|++|.++++|.+.+.++++.++|+|+|++.+++.+|
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R 192 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR 192 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence 69999999999 55566789999999999999988888889999999999999999999999999999999999999999
Q ss_pred HHHHhCCChHHHHHhhcCCCh--HHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010291 81 KEVLAAGALQPVIGLLSSCCS--ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158 (513)
Q Consensus 81 ~~~~~~g~i~~L~~ll~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 158 (513)
+.+++.|++.+++.++.++.. .+.+.+.|+|+|||++..+....-.-...+|.|.+++.+.|+++...|+|++..|+.
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD 272 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD 272 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence 999999999999999987655 778999999999998765544444444689999999999999999999999999998
Q ss_pred ccccc-hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHH-HHhhcCcccccchhhhhh---hhHHHH---
Q 010291 159 DMHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD-FIRVGGVQKLQDGEFIVQ---ATKDCV--- 230 (513)
Q Consensus 159 ~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~i~~L~~~~~~~~---~~~~~~--- 230 (513)
++..+ ..+++.|....|+++|.+++..++..|++.++|+....+.+.+ ++..|+++.+..+..+-+ ....||
T Consensus 273 g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiS 352 (526)
T COG5064 273 GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTIS 352 (526)
T ss_pred CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeec
Confidence 77654 5577788888899999999999999999999999986655554 457887776544322211 122455
Q ss_pred ---HHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCC----CCcceeeecCCchHHHHhhhcCCCcchhh
Q 010291 231 ---AKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP----DDQRTIFIDGGGLELLLGLLGSTNPKQQL 303 (513)
Q Consensus 231 ---~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~----~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 303 (513)
+++..+++.+.+.+.+|+|+++|.+.+..+++.|||++.|..++ |+.-+.+++.|+|..|..+|.-.+..+-+
T Consensus 353 NITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiie 432 (526)
T COG5064 353 NITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIE 432 (526)
T ss_pred ccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchh
Confidence 56778999999999999999999999999999999999999875 34456889999999999999987777777
Q ss_pred hHHHHHHHhhhccc
Q 010291 304 DGAVALFKLANKAT 317 (513)
Q Consensus 304 ~a~~~L~~l~~~~~ 317 (513)
-+..++.++....+
T Consensus 433 v~LD~~eniLk~Ge 446 (526)
T COG5064 433 VALDAIENILKVGE 446 (526)
T ss_pred hhHHHHHHHHhhhh
Confidence 77888888775433
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=9.4e-30 Score=276.02 Aligned_cols=316 Identities=20% Similarity=0.189 Sum_probs=274.9
Q ss_pred CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 81 (513)
Q Consensus 2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 81 (513)
+|+++.|+.+|...+.++|..++++|.+++.++.+.+..+.+.|+++.|+++|++++..+++.|+++|++++.++++++.
T Consensus 403 ~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~ 482 (2102)
T PLN03200 403 AEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKW 482 (2102)
T ss_pred ccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 46889999999999999999999999999998899999999999999999999999999999999999999998899999
Q ss_pred HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccc
Q 010291 82 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH 161 (513)
Q Consensus 82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 161 (513)
.+.+.|+++.|+++|.+++.++++.|+|+|.|++.++++.+..+.+.|++++|+++|++++++.++.++++|.|+..+.+
T Consensus 483 aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d 562 (2102)
T PLN03200 483 AITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD 562 (2102)
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999998766666666688999999999999999999999999999974322
Q ss_pred cc--------------------------------------hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc-Ccc
Q 010291 162 NQ--------------------------------------AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NED 202 (513)
Q Consensus 162 ~~--------------------------------------~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~ 202 (513)
.. ......|+++.|++++.++++.+++.|+++|.+++. +++
T Consensus 563 ~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d 642 (2102)
T PLN03200 563 AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD 642 (2102)
T ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence 11 001135899999999999999999999999999987 555
Q ss_pred hHHHHHhhcCcccccchhhhhhh-hHHHHHHH---------HHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhcc
Q 010291 203 NVADFIRVGGVQKLQDGEFIVQA-TKDCVAKT---------LKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC 272 (513)
Q Consensus 203 ~~~~~~~~g~i~~L~~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~ 272 (513)
.+..++..|++++++....+... ...-.+.+ -.+...+.+.|++++|+.+|++++.+++..|+.+|.|++
T Consensus 643 ~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl 722 (2102)
T PLN03200 643 LCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLL 722 (2102)
T ss_pred HHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 57778899999999875553221 11111111 233445678899999999999999999999999999999
Q ss_pred CCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291 273 SPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 317 (513)
Q Consensus 273 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 317 (513)
..++.+..+.+.|+++.|++++++++++.|+.|+++|.+|+.+.+
T Consensus 723 ~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 723 SDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred cCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 999988888899999999999999999999999999999997665
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-29 Score=240.60 Aligned_cols=313 Identities=22% Similarity=0.333 Sum_probs=264.2
Q ss_pred hhHHHHhhccCCHHHHHHHHHHHHHhhccCc-hhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKE 82 (513)
Q Consensus 5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~ 82 (513)
.+..++.+.++++..+..+...+..+..... .-...++..|+++.++.+|. +.++.++..|+|+|.|++.++.+.-+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 4567777888999999999999998865311 22344555699999999998 667999999999999999999999899
Q ss_pred HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCH-HHHHHHHHHHHHHhhccc
Q 010291 83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV-QLREMSAFALGRLAQDMH 161 (513)
Q Consensus 83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~-~~~~~a~~~L~~l~~~~~ 161 (513)
+++.|+++.++.++.+++.++++.|.|+|+|++.+++.+|+.+++.|++++|+.++..++. ....++.|+|.|||++..
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999998865 788999999999998885
Q ss_pred cchhh-HhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcc-hHHHHHhhcCcccccchhhhhh---------hhHHHH
Q 010291 162 NQAGI-AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED-NVADFIRVGGVQKLQDGEFIVQ---------ATKDCV 230 (513)
Q Consensus 162 ~~~~~-~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~g~i~~L~~~~~~~~---------~~~~~~ 230 (513)
....+ .-...++.|..++.+.|+.+...|+|++++|+.++. ....+++.|+++.|+++..... ..-..+
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV 307 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence 44433 335788899999999999999999999999997554 4455568999998876433211 111223
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHH-hhcchhhhHHHHHhhccCCCC-cceeeecCCchHHHHhhhcCCCcchhhhHHHH
Q 010291 231 AKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVA 308 (513)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~ 308 (513)
+++-.+.+.+.+.++++.|..++.. +...++..|||+++|++.+.. ..+.++++|.+|.|+.++++.+-++|++|+|+
T Consensus 308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa 387 (514)
T KOG0166|consen 308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA 387 (514)
T ss_pred eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence 4556778899999999999999994 666699999999999987654 67789999999999999999999999999999
Q ss_pred HHHhhhccc
Q 010291 309 LFKLANKAT 317 (513)
Q Consensus 309 L~~l~~~~~ 317 (513)
+.|++....
T Consensus 388 IsN~ts~g~ 396 (514)
T KOG0166|consen 388 ISNLTSSGT 396 (514)
T ss_pred HHhhcccCC
Confidence 999886533
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1e-28 Score=218.80 Aligned_cols=286 Identities=27% Similarity=0.401 Sum_probs=261.8
Q ss_pred CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 81 (513)
Q Consensus 2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 81 (513)
.|++.++.++-++.+..+|.++..+|.++.. ..++|..++..|++|.|+.++++.++++|..++.++++++.+ ...|+
T Consensus 166 sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd-~~~Rk 243 (550)
T KOG4224|consen 166 SGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD-RRARK 243 (550)
T ss_pred ccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh-HHHHH
Confidence 6899999998889999999999999999997 899999999999999999999999999999999999999987 67788
Q ss_pred HHHhCC--ChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291 82 EVLAAG--ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 159 (513)
Q Consensus 82 ~~~~~g--~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~ 159 (513)
.+.+.+ .++.|+.+++++++.++-.|..+|+|++++ .+.+..+++.|.+|.++++++++..........+++|++.+
T Consensus 244 ~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih 322 (550)
T KOG4224|consen 244 ILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH 322 (550)
T ss_pred HHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc
Confidence 899888 999999999999999999999999999855 66677899999999999999999878888889999999999
Q ss_pred cccchhhHhcCChHHHHHHhcCCC-HHHHHHHHHHHHhccc-CcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHH
Q 010291 160 MHNQAGIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL 237 (513)
Q Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~ 237 (513)
+-+...+++.|.+.+|+.+|+.++ .+++.+|..+|+||+. ++.+...+.+.|
T Consensus 323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esg-------------------------- 376 (550)
T KOG4224|consen 323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESG-------------------------- 376 (550)
T ss_pred cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcC--------------------------
Confidence 999999999999999999999877 5599999999999997 666666665544
Q ss_pred HHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291 238 EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 317 (513)
Q Consensus 238 ~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 317 (513)
.++.+..++.++..++|.....++..|+..+..+..+.+.|.++.|+.+..+.+.+++..++.+|.|++.+..
T Consensus 377 -------Ai~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~ 449 (550)
T KOG4224|consen 377 -------AIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE 449 (550)
T ss_pred -------chHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH
Confidence 6778889999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred cccccC
Q 010291 318 TLSSVD 323 (513)
Q Consensus 318 ~~~~i~ 323 (513)
++..+.
T Consensus 450 ~Yarvi 455 (550)
T KOG4224|consen 450 HYARVI 455 (550)
T ss_pred HHHHHH
Confidence 776554
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.8e-29 Score=220.86 Aligned_cols=309 Identities=24% Similarity=0.296 Sum_probs=272.3
Q ss_pred hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 84 (513)
Q Consensus 5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 84 (513)
.+++.-++++.++.++..|..+++|++- +.+++..+++.+++..|+.-+.+++.++|..+++|+++++.. ..++..+.
T Consensus 87 ~epvl~llqs~d~~Iq~aa~~alGnlAV-n~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA 164 (550)
T KOG4224|consen 87 NEPVLALLQSCDKCIQCAAGEALGNLAV-NMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIA 164 (550)
T ss_pred hhHHHHHHhCcchhhhhhhhhhhcccee-ccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhh
Confidence 5677888999999999999999999998 789999999999999999888888899999999999999987 77788999
Q ss_pred hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccch
Q 010291 85 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA 164 (513)
Q Consensus 85 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 164 (513)
..|++.++.++-++.+..++.++..+|.|++ +..++++.++..|.+|.|+++++++|+++++.|+.++.|++.+...|+
T Consensus 165 ~sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk 243 (550)
T KOG4224|consen 165 RSGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARK 243 (550)
T ss_pred hccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHH
Confidence 9999999999888899999999999999997 567889999999999999999999999999999999999999999999
Q ss_pred hhHhcC--ChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHH--HHHHH---
Q 010291 165 GIAHNG--GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK--TLKRL--- 237 (513)
Q Consensus 165 ~~~~~~--~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~--~~~~~--- 237 (513)
.+.+.+ .++.|+.++.+++++++..|..+|.+++.+.+.+.+++++|++|.++++..+. ..+..++. ++.++
T Consensus 244 ~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~-~~plilasVaCIrnisih 322 (550)
T KOG4224|consen 244 ILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSP-MGPLILASVACIRNISIH 322 (550)
T ss_pred HHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCc-chhHHHHHHHHHhhcccc
Confidence 999987 89999999999999999999999999999999999999999999998866322 22222211 23233
Q ss_pred ----HHHhhhhhHHHHHHHHHHhhc-chhhhHHHHHhhccC-CCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHH
Q 010291 238 ----EEKIHGRVLNHLLYLMRVAEK-GVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 311 (513)
Q Consensus 238 ----~~~~~~~~l~~Lv~lL~~~~~-~v~~~a~~aL~~l~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 311 (513)
..+.+.|++.+|+.+|+-++. ++|..|..+|.||+. ...++..+.+.|+||.+..++.+..-.+|.+...++..
T Consensus 323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~ 402 (550)
T KOG4224|consen 323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQ 402 (550)
T ss_pred cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHH
Confidence 224788999999999998655 499999999999986 56688899999999999999999999999988888888
Q ss_pred hhhccc
Q 010291 312 LANKAT 317 (513)
Q Consensus 312 l~~~~~ 317 (513)
|+-...
T Consensus 403 Lal~d~ 408 (550)
T KOG4224|consen 403 LALNDN 408 (550)
T ss_pred HHhccc
Confidence 876533
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.96 E-value=2.1e-29 Score=221.26 Aligned_cols=316 Identities=20% Similarity=0.277 Sum_probs=261.8
Q ss_pred ChhHHHHhhccCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKK 81 (513)
Q Consensus 4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~ 81 (513)
-+|.+.+.|.|++-+.+..|..-++.+.+. ...-...+++.|++|.++++|. .+..-.+..|+|+|.|++.++....+
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 367888888899999999999888877652 2333567889999999999995 66777888999999999999888778
Q ss_pred HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC--CHHHHHHHHHHHHHHhhc
Q 010291 82 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQD 159 (513)
Q Consensus 82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~ 159 (513)
.+++.|++|.++++|.+...++++.+.|+|+|++.+++.+++.+.+.|++++++.++.++ +..+..++.|+|.|||++
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence 889999999999999999999999999999999999999999999999999999999886 458889999999999987
Q ss_pred cccchhh-HhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHH-HHHhhcCcccccchhhhhh----hhH-----H
Q 010291 160 MHNQAGI-AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVA-DFIRVGGVQKLQDGEFIVQ----ATK-----D 228 (513)
Q Consensus 160 ~~~~~~~-~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~g~i~~L~~~~~~~~----~~~-----~ 228 (513)
....... .-..+++.|.+++.+.|+++...|+|++..|+..+..+. .++..|....|+++..... +.. .
T Consensus 232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGN 311 (526)
T COG5064 232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGN 311 (526)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcC
Confidence 6554332 224578889999999999999999999999998665444 4557787777766443211 111 1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCC-cceeeecCCchHHHHhhhcCCCcchhhhHHH
Q 010291 229 CVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAV 307 (513)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 307 (513)
.+.++-.+.+.+++.|+++.+..+|.++...+|+.|||+++|++.+.. .-+.+++.+.+|.|+.+|.+.+-.++++|||
T Consensus 312 IVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACW 391 (526)
T COG5064 312 IVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACW 391 (526)
T ss_pred eeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 112233455777899999999999999988999999999999987654 6678899999999999999999999999999
Q ss_pred HHHHhhhccccc
Q 010291 308 ALFKLANKATTL 319 (513)
Q Consensus 308 ~L~~l~~~~~~~ 319 (513)
++.|...+...+
T Consensus 392 AisNatsgg~~~ 403 (526)
T COG5064 392 AISNATSGGLNR 403 (526)
T ss_pred HHHhhhccccCC
Confidence 999988775544
No 8
>PHA02713 hypothetical protein; Provisional
Probab=99.96 E-value=1e-28 Score=249.53 Aligned_cols=159 Identities=19% Similarity=0.314 Sum_probs=147.9
Q ss_pred hhcccCCCcccEEEEec-CeeehhhHHHHhhcCHHHHHhccCCCCCCC-CCceecCCCCHHHHHHHHHHHhcCccccCHH
Q 010291 337 DQFVNNATLSDVTFLVE-GRRFYAHRICLLASSDAFRAMFDGGYREKD-ARDIEIPNIRWEVFELMMRFIYTGSVDVTLD 414 (513)
Q Consensus 337 ~~~~~~~~~~Dv~~~~~-~~~~~~h~~il~~~s~~f~~~~~~~~~e~~-~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~ 414 (513)
..++.++.+|||++.++ |+.|+|||.||+++|+||++||+++++|++ +.+|.|+++++++|+.+|+|+|||. ++.+
T Consensus 17 ~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~--i~~~ 94 (557)
T PHA02713 17 SNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH--ISSM 94 (557)
T ss_pred HHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC--CCHH
Confidence 46788899999999998 899999999999999999999999999864 7899999999999999999999997 6899
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhhhhhhHHH
Q 010291 415 IAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPE 494 (513)
Q Consensus 415 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~ 494 (513)
++.+++.+|++||++.+++.|++||.+.++++||+.++.++..+.+.+|.+.|.+||.+||.++.++++|.+|+.+.
T Consensus 95 nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~~~--- 171 (557)
T PHA02713 95 NVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVFEI--- 171 (557)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCHHH---
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999996554
Q ss_pred HHHHHH
Q 010291 495 IHNYFA 500 (513)
Q Consensus 495 l~~~l~ 500 (513)
+.++|.
T Consensus 172 l~~lL~ 177 (557)
T PHA02713 172 LFDIIS 177 (557)
T ss_pred HHHHhc
Confidence 444444
No 9
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=5.3e-27 Score=254.85 Aligned_cols=314 Identities=23% Similarity=0.258 Sum_probs=264.0
Q ss_pred CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 81 (513)
Q Consensus 2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 81 (513)
.|++|.|+++|+++++.+|..|++.|++++.++++++..+++.|++|.|+++|.+++..+++.|+|+|+|++.++++.+.
T Consensus 445 ~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~ 524 (2102)
T PLN03200 445 REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRA 524 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence 47999999999999999999999999999998899999999999999999999999999999999999999998777777
Q ss_pred HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchh-------------------------------------hHH
Q 010291 82 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-------------------------------------KVH 124 (513)
Q Consensus 82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-------------------------------------~~~ 124 (513)
.+.+.|+++.|+++|++.+++.+..|+|+|.|++...+.. ...
T Consensus 525 iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g 604 (2102)
T PLN03200 525 CVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG 604 (2102)
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 7878999999999999999999999999999996322110 001
Q ss_pred HHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc-chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc--Cc
Q 010291 125 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD--NE 201 (513)
Q Consensus 125 ~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~--~~ 201 (513)
....|+++.|+++++++++.+++.|+|+|.+++.+... ...++..|++++++.++++++.+++..++++|.+++. +.
T Consensus 605 ~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~ 684 (2102)
T PLN03200 605 SAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKE 684 (2102)
T ss_pred hhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH
Confidence 12468999999999999999999999999999976655 5678889999999999999999999999999999986 44
Q ss_pred chHHHHHhhcCcccccchhhhhh-hhHHHHHHHHHHH-------HHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccC
Q 010291 202 DNVADFIRVGGVQKLQDGEFIVQ-ATKDCVAKTLKRL-------EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 273 (513)
Q Consensus 202 ~~~~~~~~~g~i~~L~~~~~~~~-~~~~~~~~~~~~~-------~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 273 (513)
+++..+++.|++++|++...... ....-+..++.++ .++.+.++++.|+.+|+++++..|+.|+++|.+||.
T Consensus 685 ~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~ 764 (2102)
T PLN03200 685 NRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLK 764 (2102)
T ss_pred HHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence 45566789999999988665332 2222333333332 444567889999999999999999999999999997
Q ss_pred CCC----cceeeecCCchHHHHhhhcCCCcchhhh--HHHHHHHhhhc
Q 010291 274 PDD----QRTIFIDGGGLELLLGLLGSTNPKQQLD--GAVALFKLANK 315 (513)
Q Consensus 274 ~~~----~~~~l~~~~~i~~L~~ll~~~~~~v~~~--a~~~L~~l~~~ 315 (513)
..+ ....+...|.+..|+.+|+..+.+.... +..+|..+++.
T Consensus 765 ~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 765 HFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred CCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence 654 2345677899999999999877776554 88888888875
No 10
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.95 E-value=4.9e-28 Score=243.22 Aligned_cols=162 Identities=28% Similarity=0.457 Sum_probs=154.5
Q ss_pred hhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccCHHHH
Q 010291 337 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 416 (513)
Q Consensus 337 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 416 (513)
+.++..+.+|||++.+++++|++||.||++.|+||++||+++++|+.+.+|.+.++++++++.+++|+|||.+.++.+++
T Consensus 28 ~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~nV 107 (571)
T KOG4441|consen 28 NELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISEDNV 107 (571)
T ss_pred HHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEechHhH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhhhhhhHHHHH
Q 010291 417 QDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIH 496 (513)
Q Consensus 417 ~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~l~ 496 (513)
++++.+|++||++.+.+.|.+||.++++++||..+..+|+.|++.+|.+.+..|+.+||.++.+++||.+|+.+ ++.
T Consensus 108 q~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~---~l~ 184 (571)
T KOG4441|consen 108 QELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLE---ELI 184 (571)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHH---HHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999655 444
Q ss_pred HHHHH
Q 010291 497 NYFAK 501 (513)
Q Consensus 497 ~~l~~ 501 (513)
++|.+
T Consensus 185 ~ll~~ 189 (571)
T KOG4441|consen 185 GLLSS 189 (571)
T ss_pred hhccc
Confidence 44443
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=99.95 E-value=3.1e-28 Score=242.73 Aligned_cols=148 Identities=17% Similarity=0.193 Sum_probs=137.9
Q ss_pred cccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceec--CCCCHHHHHHHHHHHhcCccccCHHHH
Q 010291 339 FVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI--PNIRWEVFELMMRFIYTGSVDVTLDIA 416 (513)
Q Consensus 339 ~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l--~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 416 (513)
++-.+.++||.+.+| +.|+|||.||++.|+|||+||+++++|+.+ .|.+ .++++++++.+|+|+|||++.++.+++
T Consensus 16 ~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV 93 (480)
T PHA02790 16 LSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNV 93 (480)
T ss_pred HHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEecccH
Confidence 455788899987554 599999999999999999999999999965 5665 389999999999999999999999999
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCc--hhhHhhh
Q 010291 417 QDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTR--PGHSNLI 488 (513)
Q Consensus 417 ~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~--~~f~~l~ 488 (513)
++++.+|++||++.+++.|++||.+.++++||+.++.+|+.|++++|.+.+.+||.+||.++.++ ++|..|+
T Consensus 94 ~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~ 167 (480)
T PHA02790 94 VNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLS 167 (480)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999987 8998885
No 12
>PHA03098 kelch-like protein; Provisional
Probab=99.95 E-value=4.3e-27 Score=240.32 Aligned_cols=150 Identities=23% Similarity=0.424 Sum_probs=143.6
Q ss_pred CCCcccEEEEe--cCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccCHHHHHHH
Q 010291 342 NATLSDVTFLV--EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDL 419 (513)
Q Consensus 342 ~~~~~Dv~~~~--~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~l 419 (513)
++.+||+.+.+ +|++|++||.||+++|+||++||+++++ +.+|.+++ ++++|+.+|+|+|||++.++.+++.++
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~l 81 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDI 81 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHH
Confidence 88899999998 9999999999999999999999999988 57899999 999999999999999999999999999
Q ss_pred HHHHHHhcHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhhhhhhHHHH
Q 010291 420 LRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEI 495 (513)
Q Consensus 420 l~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~l 495 (513)
+.+|++|+++.|++.|+++|.+.++.+||+.++.+|+.|++.+|.+.|.+||.+||.++.++++|.+|+.+.+.++
T Consensus 82 l~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~l 157 (534)
T PHA03098 82 LSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKI 157 (534)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987655444
No 13
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.93 E-value=6e-26 Score=203.22 Aligned_cols=160 Identities=30% Similarity=0.506 Sum_probs=152.3
Q ss_pred hhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCcccc---CH
Q 010291 337 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDV---TL 413 (513)
Q Consensus 337 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~---~~ 413 (513)
..++.+..++||+|.+++++|++||.||++||+|||+|+.|+|.|+.+..|+|++.+.++|..+|+|||||++.+ ..
T Consensus 36 ~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~e 115 (620)
T KOG4350|consen 36 DELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEE 115 (620)
T ss_pred HHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchH
Confidence 345678889999999999999999999999999999999999999999999999999999999999999999975 56
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhhhhhhHH
Q 010291 414 DIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIP 493 (513)
Q Consensus 414 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~ 493 (513)
+.+.+.+.+|++|++++|.....+++.+-+..+|++.++..|..|++++|...|+-|..+|..+++.++.|..|+++.+.
T Consensus 116 d~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LSk~sL~ 195 (620)
T KOG4350|consen 116 DILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLSKDSLK 195 (620)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhhHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHH
Q 010291 494 EIH 496 (513)
Q Consensus 494 ~l~ 496 (513)
++.
T Consensus 196 e~l 198 (620)
T KOG4350|consen 196 ELL 198 (620)
T ss_pred HHH
Confidence 765
No 14
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.84 E-value=1e-19 Score=183.27 Aligned_cols=308 Identities=21% Similarity=0.220 Sum_probs=255.1
Q ss_pred HHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhh
Q 010291 17 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 96 (513)
Q Consensus 17 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll 96 (513)
..+...++..|.|++. ++.....+.+.|+++.|+++|..++.++...++.+|.+|+.. .+++..+.+.|+++.|.+++
T Consensus 263 eqLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLL 340 (708)
T ss_pred HHHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHh
Confidence 3455577888999998 789999999999999999999999999999999999999987 66799999999999999999
Q ss_pred cCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHH
Q 010291 97 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL 176 (513)
Q Consensus 97 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~ 176 (513)
.+++.+++..++++|.||+ .++..+..+++.|++|.|+.++.+++ .+..+..+|.+++.+++.|..+...++++.++
T Consensus 341 ~s~~~~l~~~aLrlL~NLS-fd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~ 417 (708)
T PF05804_consen 341 PSENEDLVNVALRLLFNLS-FDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLM 417 (708)
T ss_pred cCCCHHHHHHHHHHHHHhC-cCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHH
Confidence 9999999999999999997 55788999999999999999998654 66779999999999999999999999999999
Q ss_pred HHhcC-CCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhh----------------hhH------------
Q 010291 177 KLLDS-KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ----------------ATK------------ 227 (513)
Q Consensus 177 ~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~----------------~~~------------ 227 (513)
+++.+ +++.+...++..+.|++.++.+...+++.|+++.|++...... ...
T Consensus 418 ~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~ 497 (708)
T PF05804_consen 418 QMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAK 497 (708)
T ss_pred HHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 87655 4566777888999999999999999999888888765222110 000
Q ss_pred -----------HHHHHHHHHH--------HHHhhhhhHHHHHHHHHH--hhcchhhhHHHHHhhccCCCCcceeeecCCc
Q 010291 228 -----------DCVAKTLKRL--------EEKIHGRVLNHLLYLMRV--AEKGVQRRVALALAHLCSPDDQRTIFIDGGG 286 (513)
Q Consensus 228 -----------~~~~~~~~~~--------~~~~~~~~l~~Lv~lL~~--~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~ 286 (513)
.-+.+++.++ ..+.+.+++|.|...|.. .++++...++..++.+|.++.+...+.+.|.
T Consensus 498 ~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgl 577 (708)
T PF05804_consen 498 IVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGL 577 (708)
T ss_pred HhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCCh
Confidence 0111222222 122345788888888876 3557889999999999999888889999999
Q ss_pred hHHHHhhhcC--CCcchhhhHHHHHHHhhhccccccccCCCCCCC
Q 010291 287 LELLLGLLGS--TNPKQQLDGAVALFKLANKATTLSSVDAAPPSP 329 (513)
Q Consensus 287 i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~~~ 329 (513)
++.|+.++.+ .+.++..+.+.+++++..+..++..+......+
T Consensus 578 i~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~ 622 (708)
T PF05804_consen 578 IPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIP 622 (708)
T ss_pred HHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchH
Confidence 9999999986 678889999999999999998888776654433
No 15
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.81 E-value=5.9e-18 Score=170.68 Aligned_cols=310 Identities=17% Similarity=0.198 Sum_probs=242.3
Q ss_pred CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 81 (513)
Q Consensus 2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 81 (513)
.|+++.|+++|++++.++...++..|.+++. ..+++..+.+.|+++.|++++.+++.+++..++++|.||+.+ +..|.
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~ 366 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD-PELRS 366 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC-HHHHH
Confidence 4889999999999999999999999999998 688999999999999999999999999999999999999987 77899
Q ss_pred HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHhhcc
Q 010291 82 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDM 160 (513)
Q Consensus 82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~ 160 (513)
.++..|++|.|+.++.++ ..+..+..+|.+++. +++.+..+...++++.+++++-+ +++.+...++..+.|++.+.
T Consensus 367 ~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~ 443 (708)
T PF05804_consen 367 QMVSLGLIPKLVELLKDP--NFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK 443 (708)
T ss_pred HHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH
Confidence 999999999999999864 455678999999975 56778888888999999987655 56677778889999999888
Q ss_pred ccchhhHhcCChHHHHHHh-------------------------------------cC-CCHHHHHHHHHHHHhcccCcc
Q 010291 161 HNQAGIAHNGGLVPLLKLL-------------------------------------DS-KNGSLQHNAAFALYGLADNED 202 (513)
Q Consensus 161 ~~~~~~~~~~~i~~L~~ll-------------------------------------~~-~~~~~~~~a~~~L~~l~~~~~ 202 (513)
.+.+.+.+.++++.|++.. .. ++++....++++|+||...+.
T Consensus 444 rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~l 523 (708)
T PF05804_consen 444 RNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDL 523 (708)
T ss_pred HHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCc
Confidence 8887777777766554332 11 235566678888888876544
Q ss_pred hHHHHH-hhcCcccccchhhhhhhhH------HHHHHHH----HHHHHHhhhhhHHHHHHHHHH--hhcchhhhHHHHHh
Q 010291 203 NVADFI-RVGGVQKLQDGEFIVQATK------DCVAKTL----KRLEEKIHGRVLNHLLYLMRV--AEKGVQRRVALALA 269 (513)
Q Consensus 203 ~~~~~~-~~g~i~~L~~~~~~~~~~~------~~~~~~~----~~~~~~~~~~~l~~Lv~lL~~--~~~~v~~~a~~aL~ 269 (513)
.-..++ +.+.++.|.+......... ..+.+++ +....+.+.|+++.|+.+|+. .|.+.....+.++.
T Consensus 524 d~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~ 603 (708)
T PF05804_consen 524 DWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFY 603 (708)
T ss_pred CHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 445555 4466665544222111111 1112221 222345678999999999998 56888999999999
Q ss_pred hccCCCCcceee-ecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhcc
Q 010291 270 HLCSPDDQRTIF-IDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 316 (513)
Q Consensus 270 ~l~~~~~~~~~l-~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 316 (513)
.+...++.|..+ .+.+++..|+.+++++++++|..|-.+|--++...
T Consensus 604 ~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 604 QLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 998888777655 44677889999999999999998888887777653
No 16
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.81 E-value=4.8e-19 Score=163.35 Aligned_cols=151 Identities=30% Similarity=0.493 Sum_probs=142.5
Q ss_pred hcccCCCcccEEEEecC-----eeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccC
Q 010291 338 QFVNNATLSDVTFLVEG-----RRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVT 412 (513)
Q Consensus 338 ~~~~~~~~~Dv~~~~~~-----~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~ 412 (513)
.++.+...+|+.|.+++ +.+++||.+|+..|+.|.+||+|++.++...+|.+||+.+.+|..+|+|+|++.+.+.
T Consensus 107 ~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~~ 186 (521)
T KOG2075|consen 107 ALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKLA 186 (521)
T ss_pred hhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhhh
Confidence 46788999999999984 6899999999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHhcCChhhHHHHHHH-HHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhhh
Q 010291 413 LDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYEL-SEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLI 488 (513)
Q Consensus 413 ~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~~~~-a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~ 488 (513)
.+++..++.+|++|.++.|.+.|.++|.+.+...|.+..+-- |..++-++|.+.|++-|..+|.+....++|.+..
T Consensus 187 ~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did 263 (521)
T KOG2075|consen 187 ADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDID 263 (521)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehh
Confidence 999999999999999999999999999999888877766666 9999999999999999999999999999999886
No 17
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.81 E-value=2.8e-19 Score=145.07 Aligned_cols=150 Identities=25% Similarity=0.473 Sum_probs=131.1
Q ss_pred hhcccCCCcccEEEEecC---eeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCcccc--
Q 010291 337 DQFVNNATLSDVTFLVEG---RRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDV-- 411 (513)
Q Consensus 337 ~~~~~~~~~~Dv~~~~~~---~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~-- 411 (513)
..+.....++|+.|.++| +.+++||.||++||++++ |..+-.| ......++|.++++|..+++||||+.+++
T Consensus 58 adL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de-kse~~~~dDad~Ea~~t~iRWIYTDEidfk~ 134 (280)
T KOG4591|consen 58 ADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE-KSEELDLDDADFEAFHTAIRWIYTDEIDFKE 134 (280)
T ss_pred HHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc-chhhhcccccCHHHHHHhheeeecccccccc
Confidence 456788899999999984 789999999999999987 3322122 23467889999999999999999999875
Q ss_pred CHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhhhhh
Q 010291 412 TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQR 490 (513)
Q Consensus 412 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~ 490 (513)
.++.+.++.+.|..|+++.|++.|++-+...++++||..+|.+|+..+...|...|.+.|.-+|+++- .++|.+.+..
T Consensus 135 dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~-~a~FaqMs~a 212 (280)
T KOG4591|consen 135 DDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLG-KADFAQMSAA 212 (280)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccC-hHHHHhccHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999974 4788888543
No 18
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.79 E-value=6.5e-19 Score=158.42 Aligned_cols=155 Identities=20% Similarity=0.358 Sum_probs=143.9
Q ss_pred chhhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceec----CCCCHHHHHHHHHHHhcCccc
Q 010291 335 LGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI----PNIRWEVFELMMRFIYTGSVD 410 (513)
Q Consensus 335 l~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l----~~~~~~~~~~~l~~~Y~~~~~ 410 (513)
+.+.++.++..+||++.+-|..++.||.-|. .|+||++||+|.|+|++...|.+ |.|+..+|..++.-+|.++++
T Consensus 59 iyq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve 137 (488)
T KOG4682|consen 59 IYQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE 137 (488)
T ss_pred HHHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee
Confidence 3456778999999999999999999999998 89999999999999999987766 469999999999999999999
Q ss_pred cCHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhhhhh
Q 010291 411 VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQR 490 (513)
Q Consensus 411 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~ 490 (513)
|..+.+..++++|.+++++++.+.|.+.+++.+++.|++.+|..+..|+.+.+++.|.+|+..|+-.+....-|.+++.+
T Consensus 138 I~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~~~ 217 (488)
T KOG4682|consen 138 IKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEISIN 217 (488)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877766666544
No 19
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.79 E-value=2.3e-19 Score=142.82 Aligned_cols=105 Identities=32% Similarity=0.661 Sum_probs=95.2
Q ss_pred hcccCCCcccEEEEec-CeeehhhHHHHhhcCHHHHHhccCC-CCCCCCCceecCCCCHHHHHHHHHHHhcCccccC-HH
Q 010291 338 QFVNNATLSDVTFLVE-GRRFYAHRICLLASSDAFRAMFDGG-YREKDARDIEIPNIRWEVFELMMRFIYTGSVDVT-LD 414 (513)
Q Consensus 338 ~~~~~~~~~Dv~~~~~-~~~~~~h~~il~~~s~~f~~~~~~~-~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~-~~ 414 (513)
+++.++.++|+++.++ +..|++||.+|+++|+||+.||.+. +++.+..+|.++++++++|..+++|+|+|...++ .+
T Consensus 3 ~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~~~ 82 (111)
T PF00651_consen 3 DLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINSDE 82 (111)
T ss_dssp HHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-TT
T ss_pred HHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCHHH
Confidence 4677889999999999 7999999999999999999999988 5676667899999999999999999999999998 99
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHhc
Q 010291 415 IAQDLLRAADQYLLEGLKRLCEYTIAQD 442 (513)
Q Consensus 415 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 442 (513)
++.+++.+|++|+++.|++.|+++|.++
T Consensus 83 ~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 83 NVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp THHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 9999999999999999999999999874
No 20
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.75 E-value=3.4e-17 Score=167.95 Aligned_cols=315 Identities=21% Similarity=0.240 Sum_probs=243.3
Q ss_pred CCChhHHHHhhccC---CHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHh----------hcC--------CCHH
Q 010291 2 EGGIPPLVELLEFT---DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM----------LRS--------EDSA 60 (513)
Q Consensus 2 ~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~l----------L~~--------~~~~ 60 (513)
.|+++.|+++|..+ +.+.+..|-.+|.|+...+++.+..-.+..++..|-++ +.. ++..
T Consensus 234 SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H 313 (2195)
T KOG2122|consen 234 SGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEH 313 (2195)
T ss_pred ccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccch
Confidence 58999999999754 46789999999999998777766555544444333321 111 1122
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcC------------CChHHHHHHHHHHHHhhcCCchhhHHHH-h
Q 010291 61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS------------CCSESQREAALLLGQFAATDSDCKVHIV-Q 127 (513)
Q Consensus 61 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~ 127 (513)
-...|+.+|.+++.+ ++.|..+.+.|++..+-+++.- ..-.+++++..+|.||+.++..++..+. .
T Consensus 314 ~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~ 392 (2195)
T KOG2122|consen 314 QLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQ 392 (2195)
T ss_pred hhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 233788899999877 8889999999999999998741 1247899999999999999888777654 6
Q ss_pred cCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcc--ccchhhHhcCChHHHHHHh-cCCCHHHHHHHHHHHHhccc-Ccch
Q 010291 128 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM--HNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLAD-NEDN 203 (513)
Q Consensus 128 ~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~-~~~~ 203 (513)
.|+|..++..|.+...++....+.+|+||+-.. ..++.+.+.|-+..|.... ...........+.+||||+. ..+|
T Consensus 393 rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteN 472 (2195)
T KOG2122|consen 393 RGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTEN 472 (2195)
T ss_pred hhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccccc
Confidence 899999999999998899999999999999443 3366677788888877664 45556778889999999987 6678
Q ss_pred HHHHHhh-cCcccccchhh------------hhh----hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHH
Q 010291 204 VADFIRV-GGVQKLQDGEF------------IVQ----ATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVAL 266 (513)
Q Consensus 204 ~~~~~~~-g~i~~L~~~~~------------~~~----~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~ 266 (513)
+..|+.. |.+.-|+.... +.. .....++.+..-.+.+...+.+..|++.|++.+-.+..++|+
T Consensus 473 KA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCG 552 (2195)
T KOG2122|consen 473 KAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACG 552 (2195)
T ss_pred chhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchh
Confidence 8888864 55555543111 111 112222333344456678889999999999999999999999
Q ss_pred HHhhcc-CCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291 267 ALAHLC-SPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 317 (513)
Q Consensus 267 aL~~l~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 317 (513)
+|+||+ ++++.++.+++.|+++.|.+++.+++..+..-++.+|.|+..+.+
T Consensus 553 TLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 553 TLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred hhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 999995 677788999999999999999999999999999999999987763
No 21
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1.1e-15 Score=135.20 Aligned_cols=310 Identities=18% Similarity=0.233 Sum_probs=247.2
Q ss_pred CChhHHHHhh---ccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCCh
Q 010291 3 GGIPPLVELL---EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSP 77 (513)
Q Consensus 3 g~i~~Lv~lL---~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~a~~~L~~l~~~~~ 77 (513)
|+.+.++.++ .+++..+...++.+|..+..+.|+ +.+..+...++.+|. .++.++-...+..+..-|..++
T Consensus 104 ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE 179 (461)
T KOG4199|consen 104 GAHDALITLLELAESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHE 179 (461)
T ss_pred CCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhH
Confidence 5555555554 457788899999999999876555 566778899999987 4578888889999999999889
Q ss_pred hHHHHHHhCCChHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCc---------hhhHHHHhcCChHHHHHHhCCC-CHHHH
Q 010291 78 NIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDS---------DCKVHIVQRGAVRPLIEMLQSP-DVQLR 146 (513)
Q Consensus 78 ~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~~i~~L~~~l~~~-~~~~~ 146 (513)
-+|+.+++.++.+.+.+.+... ..++.+.+.|+++-|...++ +....+...|++..|+..++.. +|.+.
T Consensus 180 ~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L 259 (461)
T KOG4199|consen 180 VNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSL 259 (461)
T ss_pred HHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHH
Confidence 9999999999999999877654 45689999999999985543 3345567788899999999875 78899
Q ss_pred HHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCH-H---HHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhh
Q 010291 147 EMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNG-S---LQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFI 222 (513)
Q Consensus 147 ~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~---~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~ 222 (513)
...+.+|..|+..++..+.+.+.|+++.|+.++.+.+. . ....++..|..|+.++.++..+++.|+.+.++.+...
T Consensus 260 ~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~ 339 (461)
T KOG4199|consen 260 VSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALR 339 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHH
Confidence 99999999999999999999999999999999988542 2 4467888999999999999999999999998876666
Q ss_pred hhhhHHHHHHHHH-----------HHHHHhhhhhHHHHHHHHHH--hhcchhhhHHHHHhhccCC-CCcceeeecCCchH
Q 010291 223 VQATKDCVAKTLK-----------RLEEKIHGRVLNHLLYLMRV--AEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLE 288 (513)
Q Consensus 223 ~~~~~~~~~~~~~-----------~~~~~~~~~~l~~Lv~lL~~--~~~~v~~~a~~aL~~l~~~-~~~~~~l~~~~~i~ 288 (513)
.......+..... .-...++.|.-...++.|+. ....+|.+||+.+.|++.. .+++..+ -..|++
T Consensus 340 h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~-l~~GiE 418 (461)
T KOG4199|consen 340 HSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTIL-LANGIE 418 (461)
T ss_pred cCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchH-HhccHH
Confidence 5555444433322 22344677777888888887 4567899999999999765 4455544 457799
Q ss_pred HHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291 289 LLLGLLGSTNPKQQLDGAVALFKLANKAT 317 (513)
Q Consensus 289 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 317 (513)
.|++.....++.....+-.+|..|..+.+
T Consensus 419 ~Li~~A~~~h~tce~~akaALRDLGc~v~ 447 (461)
T KOG4199|consen 419 KLIRTAKANHETCEAAAKAALRDLGCDVY 447 (461)
T ss_pred HHHHHHHhcCccHHHHHHHHHHhcCcchh
Confidence 99999999999998888889988876543
No 22
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.74 E-value=4.9e-17 Score=160.15 Aligned_cols=309 Identities=19% Similarity=0.245 Sum_probs=231.0
Q ss_pred hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh--HHHH
Q 010291 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN--IKKE 82 (513)
Q Consensus 5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~~ 82 (513)
+|..+.+|.+.++.+|.+|+..+..++.++...+..+.+.|+|+.|+.+|.+.+.+|+..|+++|.||..++.. ++-.
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla 314 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA 314 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999987766 8888
Q ss_pred HHhCCChHHHHHhhcC-CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC--------C------CHHHHH
Q 010291 83 VLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--------P------DVQLRE 147 (513)
Q Consensus 83 ~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--------~------~~~~~~ 147 (513)
+.+.++++.++++++. .|.++++....+|+||++. +..+..++. ..+..|...+-. + +..+..
T Consensus 315 i~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~ 392 (717)
T KOG1048|consen 315 IKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR 392 (717)
T ss_pred hhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceeee
Confidence 9999999999999986 7899999999999999866 344444443 344444433321 1 256779
Q ss_pred HHHHHHHHHhh-ccccchhhHh-cCChHHHHHHhc------CCCHHHHHHHHHHHHhcccCcc-----hHHHHH-hhcCc
Q 010291 148 MSAFALGRLAQ-DMHNQAGIAH-NGGLVPLLKLLD------SKNGSLQHNAAFALYGLADNED-----NVADFI-RVGGV 213 (513)
Q Consensus 148 ~a~~~L~~l~~-~~~~~~~~~~-~~~i~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~-----~~~~~~-~~g~i 213 (513)
++..+|+|++. +.+.|+.+.+ .|.|+.|+..++ ..+.+..++++..+.||+..-+ ...+.. ..+..
T Consensus 393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~ 472 (717)
T KOG1048|consen 393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL 472 (717)
T ss_pred hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc
Confidence 99999999996 5566788877 678898988876 3467788999999999986221 111111 11111
Q ss_pred ccccchhhhhhhhHHHHHHHHH-------------------HHHHHhhhhhHHHHHHHHHH-hhcchhhhHHHHHhhccC
Q 010291 214 QKLQDGEFIVQATKDCVAKTLK-------------------RLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCS 273 (513)
Q Consensus 214 ~~L~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~l~~Lv~lL~~-~~~~v~~~a~~aL~~l~~ 273 (513)
...- . ......|+....+ ..+.++...++..-+.+|.. .+....++++++|.|++.
T Consensus 473 ~~~~-~---~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA 548 (717)
T KOG1048|consen 473 PGVG-P---PAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTA 548 (717)
T ss_pred ccCC-C---cccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhc
Confidence 0000 0 0011122211111 12223555677765566654 678889999999999976
Q ss_pred CCC------cceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhccccc
Q 010291 274 PDD------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTL 319 (513)
Q Consensus 274 ~~~------~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 319 (513)
+.. .+..+.+..+.+.|+.++..+++.+.+.++.+|.||+.+....
T Consensus 549 ~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk 600 (717)
T KOG1048|consen 549 GLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNK 600 (717)
T ss_pred cCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhh
Confidence 422 3345588899999999999999999999999999999875543
No 23
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.70 E-value=6.9e-17 Score=123.24 Aligned_cols=90 Identities=37% Similarity=0.692 Sum_probs=85.8
Q ss_pred cEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHh
Q 010291 347 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQY 426 (513)
Q Consensus 347 Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~ 426 (513)
|+++.++|+.|++||.+|+++|+||++||.+++.++....+.+++.++++|+.+++|+|+|.+.++.+++.+++.+|++|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~ 80 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYL 80 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999998888778899999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHH
Q 010291 427 LLEGLKRLCE 436 (513)
Q Consensus 427 ~~~~l~~~c~ 436 (513)
+++++...|+
T Consensus 81 ~~~~l~~~c~ 90 (90)
T smart00225 81 QIPGLVELCE 90 (90)
T ss_pred CcHHHHhhhC
Confidence 9999999884
No 24
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.69 E-value=6.9e-17 Score=157.59 Aligned_cols=162 Identities=21% Similarity=0.396 Sum_probs=142.0
Q ss_pred CCcccEEEEe-cCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhc-Cccc-----cCHHH
Q 010291 343 ATLSDVTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT-GSVD-----VTLDI 415 (513)
Q Consensus 343 ~~~~Dv~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~-~~~~-----~~~~~ 415 (513)
...-|+.+.. +|+.++|||++|++|++||..||..-|.|++.-.+.+..++.+.+..+|+|+|+ +... -..+.
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF 787 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDF 787 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence 4455666666 567799999999999999999999999999887777777889999999999994 4443 24577
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhhhhhhHHHH
Q 010291 416 AQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEI 495 (513)
Q Consensus 416 ~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~l 495 (513)
+.+++..||.|.+.+|++.|+..|.+.++..||..++++|..|++..|+..|++||..|+..++.-....+++...+..+
T Consensus 788 ~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi~~~dg~~LK~l 867 (1267)
T KOG0783|consen 788 MFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSISEWDGFHLKKL 867 (1267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccHhhhcchHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999988777777777788888
Q ss_pred HHHHHHHhC
Q 010291 496 HNYFAKALT 504 (513)
Q Consensus 496 ~~~l~~~~~ 504 (513)
.+++++.+.
T Consensus 868 ~~~yrkm~~ 876 (1267)
T KOG0783|consen 868 AQRYRKMLS 876 (1267)
T ss_pred HHHHHHHhh
Confidence 888887775
No 25
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.69 E-value=7.3e-16 Score=151.96 Aligned_cols=283 Identities=25% Similarity=0.297 Sum_probs=211.0
Q ss_pred CChhHHHHhhccCCHHHHHHHHHHHHHhhccCch--hHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhH
Q 010291 3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE--NKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNI 79 (513)
Q Consensus 3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~--~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~ 79 (513)
|+|+.|+.+|.+++.+++.+|+++|.|+..++.. ++..+.+.++|+.++++|+ ..|.++++....+||||+.. +..
T Consensus 275 ggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~l 353 (717)
T KOG1048|consen 275 GGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DAL 353 (717)
T ss_pred ccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHH
Confidence 8999999999999999999999999999988665 9999999999999999999 58999999999999999976 555
Q ss_pred HHHHHhCCChHHHHHhhcC--------------CChHHHHHHHHHHHHhhcCCchhhHHHHh-cCChHHHHHHhC-----
Q 010291 80 KKEVLAAGALQPVIGLLSS--------------CCSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQ----- 139 (513)
Q Consensus 80 ~~~~~~~g~i~~L~~ll~~--------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~----- 139 (513)
+..++. .++..|..-+-. .+.++..++..+|+|+++...+.++.+.+ .|.|..|+..++
T Consensus 354 K~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~ 432 (717)
T KOG1048|consen 354 KMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQK 432 (717)
T ss_pred HHHHHH-HHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHh
Confidence 555544 344444443211 13567799999999999888888988876 889999998886
Q ss_pred -CCCHHHHHHHHHHHHHHhhcccc--------------------------------chh---------------------
Q 010291 140 -SPDVQLREMSAFALGRLAQDMHN--------------------------------QAG--------------------- 165 (513)
Q Consensus 140 -~~~~~~~~~a~~~L~~l~~~~~~--------------------------------~~~--------------------- 165 (513)
..|.+.+++|+.+|+||+..-+. +++
T Consensus 433 ~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e 512 (717)
T KOG1048|consen 433 SDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSE 512 (717)
T ss_pred ccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCce
Confidence 24778999999999999843220 000
Q ss_pred -hHhcCChHHHHHHh-cCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhh
Q 010291 166 -IAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 243 (513)
Q Consensus 166 -~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (513)
+....++..-+.++ .+.++.+.++++++|-|++...-.-...+... .+...
T Consensus 513 ~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~---------------------------v~~ke 565 (717)
T KOG1048|consen 513 WLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGA---------------------------VFRKE 565 (717)
T ss_pred eeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhh---------------------------hhhhc
Confidence 00000122212222 23456777888888888875332211111111 11355
Q ss_pred hhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCC------cchhhhHHHHHHHhhhc
Q 010291 244 RVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTN------PKQQLDGAVALFKLANK 315 (513)
Q Consensus 244 ~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~------~~v~~~a~~~L~~l~~~ 315 (513)
..++.|+.+|+..++.|...++.+|.||+.+..++..+- .++++.|++.+.... .+....++.+|.++...
T Consensus 566 kgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~ 642 (717)
T KOG1048|consen 566 KGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK 642 (717)
T ss_pred cCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH
Confidence 679999999999999999999999999999999987765 789999999997633 35556677777777754
No 26
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.65 E-value=2e-14 Score=131.32 Aligned_cols=278 Identities=18% Similarity=0.184 Sum_probs=211.6
Q ss_pred CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC---C----CHHHHHHHHHHHHHhhc
Q 010291 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS---E----DSAIHYEAVGVIGNLVH 74 (513)
Q Consensus 2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~---~----~~~v~~~a~~~L~~l~~ 74 (513)
+|+++.|.+..+|++.++-.+.+++|+|+|..+.++|..+.+.||-+.+++.|+. . +.+....+.+.|.|...
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 4677888888899999999999999999999999999999999998888888872 1 34677788899999999
Q ss_pred CChhHHHHHHhCCChHHHHHhhcC--CCh--------------------------------------------HHHHHHH
Q 010291 75 SSPNIKKEVLAAGALQPVIGLLSS--CCS--------------------------------------------ESQREAA 108 (513)
Q Consensus 75 ~~~~~~~~~~~~g~i~~L~~ll~~--~~~--------------------------------------------~~~~~a~ 108 (513)
++.+.+..+.+.|+++.|...+.- .+. ++.+.+.
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 999999999999999988776531 111 1222222
Q ss_pred HHHHHhhcCCchhhHHHHhcCChHHHHHHhCC-C-------CHHHHHHHHHHHHHHhhccccchhhHhcC-ChHHHHHHh
Q 010291 109 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-P-------DVQLREMSAFALGRLAQDMHNQAGIAHNG-GLVPLLKLL 179 (513)
Q Consensus 109 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~-------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~i~~L~~ll 179 (513)
..|...+ .+...+..+.+.|.+..++.+++. + .......++....-+..+++.-.++...+ .++.+..++
T Consensus 246 eila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 246 EILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHh
Confidence 2333332 222333446677777777777764 1 12233455555555556666655555544 677899999
Q ss_pred cCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH----
Q 010291 180 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV---- 255 (513)
Q Consensus 180 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~---- 255 (513)
.+.|...+..+..+++|+++.++++.++++. +++..|+.+|..
T Consensus 325 ~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~---------------------------------~~~nkL~~~l~~~~~v 371 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFARRDDICIQLVQK---------------------------------DFLNKLISCLMQEKDV 371 (604)
T ss_pred cCCchhHHHHHHHHHHhhhccchHHHHHHHH---------------------------------HHHHHHHHHHHHhcCC
Confidence 9999999999999999999999888888654 467777787766
Q ss_pred -hhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhh
Q 010291 256 -AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 313 (513)
Q Consensus 256 -~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 313 (513)
++.++|.+++.+|.|+..+..++..+..+|..+.++..++...|.++.+-...+..+.
T Consensus 372 dgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~ 430 (604)
T KOG4500|consen 372 DGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIR 430 (604)
T ss_pred CccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 5677899999999999999999999999999999999999988888877666655443
No 27
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.63 E-value=3.2e-14 Score=142.47 Aligned_cols=278 Identities=17% Similarity=0.204 Sum_probs=224.7
Q ss_pred ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 83 (513)
Q Consensus 4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 83 (513)
..+.|.+.|.++++.+|..+++.|++++.++......+.+.++++.++.+|.+++..+...|+.+|.+++...+. .+.+
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~-~~~l 156 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG-LEQL 156 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh-HHHH
Confidence 456778888999999999999999999987777777888899999999999999999999999999999987544 4667
Q ss_pred HhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccc
Q 010291 84 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 163 (513)
Q Consensus 84 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 163 (513)
+..+.++.|..++..++..+|..+..++.+++..+++....+.+.|+++.++..++++|.-++.+++.+|..|+..+.+.
T Consensus 157 ~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~ 236 (503)
T PF10508_consen 157 FDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGL 236 (503)
T ss_pred hCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHH
Confidence 78888999999998888889999999999999999999999999999999999999999999999999999999988889
Q ss_pred hhhHhcCChHHHHHHhcCCCHHH------HHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHH
Q 010291 164 AGIAHNGGLVPLLKLLDSKNGSL------QHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL 237 (513)
Q Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~~------~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~ 237 (513)
..+.+.|.++.|..++.+.+.+- .-..+...++++..... .+..
T Consensus 237 ~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~--~v~~---------------------------- 286 (503)
T PF10508_consen 237 QYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ--EVLE---------------------------- 286 (503)
T ss_pred HHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH--HHHH----------------------------
Confidence 99999999999999997653221 12222445555542111 0000
Q ss_pred HHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceee-ecC-CchHH----HHhhhcCCCcchhhhHHHHHHH
Q 010291 238 EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIF-IDG-GGLEL----LLGLLGSTNPKQQLDGAVALFK 311 (513)
Q Consensus 238 ~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l-~~~-~~i~~----L~~ll~~~~~~v~~~a~~~L~~ 311 (513)
.-..++..+..++.+.|+..+..|..+++.++...+++..+ .+. +.++. +.....+...++|..+..++.+
T Consensus 287 ---~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~ 363 (503)
T PF10508_consen 287 ---LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALAS 363 (503)
T ss_pred ---HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 11345667778888899999999999999999988887766 333 33344 3444455777899999999999
Q ss_pred hhhc
Q 010291 312 LANK 315 (513)
Q Consensus 312 l~~~ 315 (513)
+...
T Consensus 364 il~~ 367 (503)
T PF10508_consen 364 ILTS 367 (503)
T ss_pred HHhc
Confidence 9754
No 28
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.58 E-value=1.8e-13 Score=122.65 Aligned_cols=191 Identities=18% Similarity=0.152 Sum_probs=160.6
Q ss_pred CChhHHHHhhcc-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291 3 GGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 81 (513)
Q Consensus 3 g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 81 (513)
+-++.|+.+|+. .+|.++..|+.++++.+. .+.++..+.+.|+++.+..+|.++++.++..|+++|.|++.+. +++.
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~-en~~ 89 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND-ENQE 89 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh-hhHH
Confidence 446889999985 689999999999999886 7899999999999999999999999999999999999999774 4444
Q ss_pred HHHhCCChHHHHHhhcC--CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291 82 EVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 159 (513)
Q Consensus 82 ~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~ 159 (513)
.+-. .++.+++.+.+ .+.+++..+..+|.||+..+.. ...+. +.++.++.++.+++..++..++++|.||+.+
T Consensus 90 ~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~-~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 90 QIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY-HHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch-hhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 4432 46666664443 3678999999999999855433 34343 4799999999999999999999999999999
Q ss_pred cccchhhHhcCChHHHHHHhcCC-CHHHHHHHHHHHHhcccC
Q 010291 160 MHNQAGIAHNGGLVPLLKLLDSK-NGSLQHNAAFALYGLADN 200 (513)
Q Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~ 200 (513)
+...+.++..+++..++.++..+ +.++...++..+.|+..+
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 99988899999999999999876 577788899999999763
No 29
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.58 E-value=6e-14 Score=128.27 Aligned_cols=306 Identities=16% Similarity=0.111 Sum_probs=224.2
Q ss_pred HHHHHHHHHHHHHhhccCchhHHHHHhc----CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHH
Q 010291 17 TKVQRAAAGALRTLAFKNDENKNQIVEC----NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 92 (513)
Q Consensus 17 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~----g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 92 (513)
..++..+..++...+. ++-.|..+.+. +.+..|.+...+++.++..+..++|+|+|.++.+.|..+.+.||-..+
T Consensus 56 ~tv~~~qssC~A~~sk-~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqiv 134 (604)
T KOG4500|consen 56 DTVYLFQSSCLADRSK-NEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIV 134 (604)
T ss_pred chhhhhhHHHHHHHhh-hHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceeh
Confidence 3466677788888886 66666666655 445555556667789999999999999999999999999999998888
Q ss_pred HHhhcC----C---ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC--CHHHHHHHHHHHHHHhhcc-cc
Q 010291 93 IGLLSS----C---CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQDM-HN 162 (513)
Q Consensus 93 ~~ll~~----~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~~-~~ 162 (513)
+.+|+. . +.+...-+...|.|..-++.+.+.++.+.|+++.|...+.-+ +....+.......||..-. ++
T Consensus 135 id~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~ 214 (604)
T KOG4500|consen 135 IDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEM 214 (604)
T ss_pred HhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHh
Confidence 888764 1 236677788899999989999999999999999998887643 5555555555555554211 11
Q ss_pred -chhhHhcCChHHHHHHhcCC-CHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhh-----hhhhHHHHHHHH-
Q 010291 163 -QAGIAHNGGLVPLLKLLDSK-NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFI-----VQATKDCVAKTL- 234 (513)
Q Consensus 163 -~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~-----~~~~~~~~~~~~- 234 (513)
.....+......+++++.+. ++++.+.....+...+.++..+-.+.+.|.+..+++.... ............
T Consensus 215 ~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~ 294 (604)
T KOG4500|consen 215 LYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIA 294 (604)
T ss_pred hhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhh
Confidence 22233344455577777543 4667777888999999998888888888876665543332 111111111111
Q ss_pred ----------HHHHHHhhhh-hHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcC-----CC
Q 010291 235 ----------KRLEEKIHGR-VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS-----TN 298 (513)
Q Consensus 235 ----------~~~~~~~~~~-~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~-----~~ 298 (513)
+..+.++..+ ++..++.++++.+.+.+..+..+|+|+++.++.+..+++.+.+..|+.++.. ++
T Consensus 295 el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgn 374 (604)
T KOG4500|consen 295 ELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGN 374 (604)
T ss_pred hHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 2334455555 9999999999999999999999999999999999999999999999999853 55
Q ss_pred cchhhhHHHHHHHhhhccccccccC
Q 010291 299 PKQQLDGAVALFKLANKATTLSSVD 323 (513)
Q Consensus 299 ~~v~~~a~~~L~~l~~~~~~~~~i~ 323 (513)
-++|.+++.+|.|+.-...+...+.
T Consensus 375 V~~qhA~lsALRnl~IPv~nka~~~ 399 (604)
T KOG4500|consen 375 VERQHACLSALRNLMIPVSNKAHFA 399 (604)
T ss_pred chhHHHHHHHHHhccccCCchhhcc
Confidence 6778899999999986555444443
No 30
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.54 E-value=1.5e-13 Score=123.16 Aligned_cols=193 Identities=20% Similarity=0.213 Sum_probs=159.1
Q ss_pred HhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCch
Q 010291 42 VECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120 (513)
Q Consensus 42 ~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 120 (513)
.+.+-++.|+.+|+ +.++.+++.++.++++.+.. +..++.+.+.|+++.+..++.++++.++..|+++|.|++.. .+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~e 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DE 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hh
Confidence 45667899999999 57899999999999999865 78899999999999999999999999999999999999755 44
Q ss_pred hhHHHHhcCChHHHHHHhCCC--CHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 010291 121 CKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 198 (513)
Q Consensus 121 ~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 198 (513)
++..+- ..++.+++.+.+. +..++..+.++|.||+..++.+..+. +.++.++.++.+++..++..++.+|.||+
T Consensus 87 n~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 87 NQEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hHHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 444432 2577777655443 78999999999999998777766654 47888999999999999999999999999
Q ss_pred cCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh-hcchhhhHHHHHhhccC
Q 010291 199 DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHLCS 273 (513)
Q Consensus 199 ~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~-~~~v~~~a~~aL~~l~~ 273 (513)
.++...+.++..+ ++..++.++.+. +.++...++..+.|+..
T Consensus 163 ~np~~~~~Ll~~q---------------------------------~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 163 ENPDMTRELLSAQ---------------------------------VLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred cCHHHHHHHHhcc---------------------------------chhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 9998877776654 456677777774 56777888888888854
No 31
>PRK09687 putative lyase; Provisional
Probab=99.52 E-value=8.3e-13 Score=121.38 Aligned_cols=252 Identities=17% Similarity=0.113 Sum_probs=169.1
Q ss_pred ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 83 (513)
Q Consensus 4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 83 (513)
.++.|.++|.+++..+|..|++.|..+.. ..+++.+..++.++++.+|..|+++|+.+......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence 35788999999999999999999998764 24577888899999999999999999999643111
Q ss_pred HhCCChHHHHHh-hcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc
Q 010291 84 LAAGALQPVIGL-LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 162 (513)
Q Consensus 84 ~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 162 (513)
....++.|..+ ++++++.|+..|+.+|++++...... ....++.+...+.++++.++..++++|+.+.
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----- 156 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN----- 156 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC-----
Confidence 11246777766 67788999999999999996433211 1124556778888889999999999997653
Q ss_pred chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcc-hHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHh
Q 010291 163 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED-NVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 241 (513)
Q Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (513)
...+++.|+.++.++++.++..|+.+|+.+..... ....+.. .| .+........++..+....
T Consensus 157 -----~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~-----~L------~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 157 -----DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVA-----ML------QDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred -----CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHH-----Hh------cCCChHHHHHHHHHHHccC
Confidence 22468889999999999999999999999843222 1111110 00 0111122222333333344
Q ss_pred hhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhc-CCCcchhhhHHHHHH
Q 010291 242 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVALF 310 (513)
Q Consensus 242 ~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~ 310 (513)
+..+++.|+..|++++ ++..++.+|+++-. ..++|.|.+++. ++++.++..+.+++.
T Consensus 221 ~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 221 DKRVLSVLIKELKKGT--VGDLIIEAAGELGD----------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCC----------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 5556666666665543 45566666665532 235666666665 456666666665553
No 32
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.51 E-value=5.8e-13 Score=107.51 Aligned_cols=118 Identities=28% Similarity=0.412 Sum_probs=111.2
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCc
Q 010291 40 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 119 (513)
Q Consensus 40 ~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 119 (513)
.+.+.|+++.++++|.++++.++..++++|++++.+++..+..+.+.|+++.++.++.+++++++..++++|++++...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 46688999999999999999999999999999999988889999999999999999999999999999999999998877
Q ss_pred hhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010291 120 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 157 (513)
Q Consensus 120 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 157 (513)
.....+.+.|+++.+++++.+++..+++.++++|.+++
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 77888889999999999999999999999999999987
No 33
>PRK09687 putative lyase; Provisional
Probab=99.48 E-value=1.4e-12 Score=119.98 Aligned_cols=223 Identities=17% Similarity=0.157 Sum_probs=164.5
Q ss_pred ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKE 82 (513)
Q Consensus 4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 82 (513)
+++.+.++++++++.+|..|+++|+.+.... .. ....++.|..+ ++++++.||..|+.+|++++......
T Consensus 55 ~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~--- 125 (280)
T PRK09687 55 VFRLAIELCSSKNPIERDIGADILSQLGMAK-RC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY--- 125 (280)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc---
Confidence 4577888889999999999999999987521 11 12356777776 56889999999999999996432211
Q ss_pred HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc
Q 010291 83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 162 (513)
Q Consensus 83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 162 (513)
...++..+...+.++++.++..++++|+++. ++ ..++.|+.+++++++.++..|+.+|+.+..+
T Consensus 126 --~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--~~---------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--- 189 (280)
T PRK09687 126 --SPKIVEQSQITAFDKSTNVRFAVAFALSVIN--DE---------AAIPLLINLLKDPNGDVRNWAAFALNSNKYD--- 189 (280)
T ss_pred --chHHHHHHHHHhhCCCHHHHHHHHHHHhccC--CH---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC---
Confidence 1124556777788889999999999998773 12 2688999999999999999999999998321
Q ss_pred chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhh
Q 010291 163 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 242 (513)
Q Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (513)
....++.|+.++.+.+..++..|+++|+.+-. +.....+.+ ...... ....++.-+..+.+
T Consensus 190 -----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~---------~L~~~~----~~~~a~~ALg~ig~ 250 (280)
T PRK09687 190 -----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIK---------ELKKGT----VGDLIIEAAGELGD 250 (280)
T ss_pred -----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHH---------HHcCCc----hHHHHHHHHHhcCC
Confidence 11456679999999999999999999998653 333333322 111100 11234555666677
Q ss_pred hhhHHHHHHHHH-HhhcchhhhHHHHHhh
Q 010291 243 GRVLNHLLYLMR-VAEKGVQRRVALALAH 270 (513)
Q Consensus 243 ~~~l~~Lv~lL~-~~~~~v~~~a~~aL~~ 270 (513)
...+|.|..++. ++|..++..|.++|..
T Consensus 251 ~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 251 KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 889999999997 6899999999988753
No 34
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.47 E-value=1.2e-12 Score=105.66 Aligned_cols=114 Identities=37% Similarity=0.518 Sum_probs=108.6
Q ss_pred CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 81 (513)
Q Consensus 2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 81 (513)
.|+++.++++|+++++.++..++.+|.+++.++++....+.+.|+++.++++|.++++.++..++++|++++.+.+..+.
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 58999999999999999999999999999998799999999999999999999999999999999999999998878888
Q ss_pred HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhh
Q 010291 82 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 115 (513)
Q Consensus 82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 115 (513)
.+.+.|+++.+++++.+.+.+++..++++|.+++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 8899999999999999999999999999999997
No 35
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=4.6e-11 Score=106.33 Aligned_cols=273 Identities=14% Similarity=0.164 Sum_probs=210.2
Q ss_pred ChhHHHHhhc--cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCh---
Q 010291 4 GIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSP--- 77 (513)
Q Consensus 4 ~i~~Lv~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~--- 77 (513)
++..++.+|. .++.++-...+.++..-+.+++-+++.+.+.++.+.+.+.|. .+..++.+...++++-+..+.+
T Consensus 146 g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV 225 (461)
T KOG4199|consen 146 AMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRV 225 (461)
T ss_pred cHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceee
Confidence 5667778774 456788888999999999999999999999999999997777 3444688888999999986643
Q ss_pred ------hHHHHHHhCCChHHHHHhhcC-CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC-CH---HHH
Q 010291 78 ------NIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-DV---QLR 146 (513)
Q Consensus 78 ------~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~---~~~ 146 (513)
+..+.+.+.|++..|++.+.. -++++...++.+|..++.. .+....+.+.|++..|+.++.+. +. .+.
T Consensus 226 ~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~ 304 (461)
T KOG4199|consen 226 VFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRTLA 304 (461)
T ss_pred ecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHHHH
Confidence 234567778899999999986 3689999999999999855 55567789999999999999874 33 355
Q ss_pred HHHHHHHHHHhhccccchhhHhcCChHHHHHHhc--CCCHHHHHHHHHHHHhccc-CcchHHHHHhhcCcccccchhhhh
Q 010291 147 EMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD--SKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIV 223 (513)
Q Consensus 147 ~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~ 223 (513)
+.++..|+.|+.++.++..+++.|+.+.++.++. +.++.+...++.++..||- .+++...+++.|+-..-++.....
T Consensus 305 k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah 384 (461)
T KOG4199|consen 305 KTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH 384 (461)
T ss_pred HHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC
Confidence 7889999999999999999999999999888764 4578899999999999985 888888899988766655544433
Q ss_pred hhhH---HHHHHHHHHHHHH-------hhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCc
Q 010291 224 QATK---DCVAKTLKRLEEK-------IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ 277 (513)
Q Consensus 224 ~~~~---~~~~~~~~~~~~~-------~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~ 277 (513)
+... ......+.++... +-...++.|+..-+..++.....|-.+|..|-.+...
T Consensus 385 P~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLGc~v~l 448 (461)
T KOG4199|consen 385 PVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDLGCDVYL 448 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcCcchhh
Confidence 3222 2222233333221 2234678888888888888888888899888554443
No 36
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.46 E-value=1.4e-11 Score=123.64 Aligned_cols=293 Identities=20% Similarity=0.211 Sum_probs=222.7
Q ss_pred CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 81 (513)
Q Consensus 2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 81 (513)
.+.++.++.++.+++..+...|+.+|.+++. ++.....+.+.+.+..|.+++..++..+|..+..++.+++..+++...
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~ 196 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAE 196 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3677889999999999999999999999998 566666788888899999999988899999999999999999999999
Q ss_pred HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC--CH---H-HHHHHHHHHHH
Q 010291 82 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DV---Q-LREMSAFALGR 155 (513)
Q Consensus 82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~---~-~~~~a~~~L~~ 155 (513)
.+.+.|.++.++..++++|.=++..++.+|..++. .+.....+.+.|+++.|.+++... || . ..-..+...++
T Consensus 197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN 275 (503)
T ss_pred HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence 99999999999999999888899999999999997 677788899999999999999764 33 1 12333466677
Q ss_pred HhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHH-HhhcCcccccchhhhhhhhHHHHHHHH
Q 010291 156 LAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF-IRVGGVQKLQDGEFIVQATKDCVAKTL 234 (513)
Q Consensus 156 l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~g~i~~L~~~~~~~~~~~~~~~~~~ 234 (513)
++...+..-.-.-...+..+..++.+.|...+..|+.+++.++...+.+..+ ...|.
T Consensus 276 la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~---------------------- 333 (503)
T PF10508_consen 276 LARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGP---------------------- 333 (503)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcch----------------------
Confidence 7764332221112334455778888899999999999999999877766555 22110
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCc---------c-e--eeecCCchH-HHHhhhcCCCcch
Q 010291 235 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ---------R-T--IFIDGGGLE-LLLGLLGSTNPKQ 301 (513)
Q Consensus 235 ~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~---------~-~--~l~~~~~i~-~L~~ll~~~~~~v 301 (513)
.-..++........++..++|..++.+++++...+.. . . .....+... .+..+++.+-|++
T Consensus 334 ------~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~el 407 (503)
T PF10508_consen 334 ------AMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPEL 407 (503)
T ss_pred ------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHH
Confidence 0112344444555556778899999999998432111 0 1 112223344 6778888888999
Q ss_pred hhhHHHHHHHhhhccccccccCC
Q 010291 302 QLDGAVALFKLANKATTLSSVDA 324 (513)
Q Consensus 302 ~~~a~~~L~~l~~~~~~~~~i~~ 324 (513)
|..+...+..++.+.+....+..
T Consensus 408 r~a~~~~l~~l~~~~Wg~~~i~~ 430 (503)
T PF10508_consen 408 RCAAYRLLQALAAQPWGQREICS 430 (503)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHh
Confidence 99999999999999887665544
No 37
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.37 E-value=1.3e-10 Score=125.10 Aligned_cols=255 Identities=19% Similarity=0.133 Sum_probs=142.7
Q ss_pred CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291 3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 82 (513)
Q Consensus 3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 82 (513)
+.++.|++.|+++++.+|..|+..|+.+.. .+.++.|+..|+++++.+|..|+.+|..+....+
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----- 684 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----- 684 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-----
Confidence 456889999999999999999999998753 3468889999999999999999999988853211
Q ss_pred HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcc--
Q 010291 83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-- 160 (513)
Q Consensus 83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-- 160 (513)
..+.+...|.++++.++..++.+|..+...+ ...++..|.++++.++..|+.+|..+....
T Consensus 685 -----~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l 747 (897)
T PRK13800 685 -----PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDPDHRVRIEAVRALVSVDDVESV 747 (897)
T ss_pred -----chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH
Confidence 1235556666666777777766666653111 123444555555555555555554431000
Q ss_pred ---------ccchhh----H-----hcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhh
Q 010291 161 ---------HNQAGI----A-----HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFI 222 (513)
Q Consensus 161 ---------~~~~~~----~-----~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~ 222 (513)
..|... . ....++.|..++.++++.++..|+.+|+.+...+.....+.. .|.
T Consensus 748 ~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~-----aL~----- 817 (897)
T PRK13800 748 AGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATA-----ALR----- 817 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHH-----Hhc-----
Confidence 000000 0 011244566666666666666666666665432211111100 000
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchh
Q 010291 223 VQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQ 302 (513)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 302 (513)
+.....-..+...+..+.....++.|+.+|+++++.||..|+++|+.+.. .....+.|...+++.++.||
T Consensus 818 -d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~---------~~~a~~~L~~al~D~d~~Vr 887 (897)
T PRK13800 818 -ASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWPG---------DPAARDALTTALTDSDADVR 887 (897)
T ss_pred -CCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccCC---------CHHHHHHHHHHHhCCCHHHH
Confidence 00111222233334444445556666666666666666666666665410 11235556666666666666
Q ss_pred hhHHHHHH
Q 010291 303 LDGAVALF 310 (513)
Q Consensus 303 ~~a~~~L~ 310 (513)
..|..+|.
T Consensus 888 ~~A~~aL~ 895 (897)
T PRK13800 888 AYARRALA 895 (897)
T ss_pred HHHHHHHh
Confidence 66666554
No 38
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.36 E-value=1.2e-10 Score=111.47 Aligned_cols=310 Identities=14% Similarity=0.157 Sum_probs=224.4
Q ss_pred hhHHHHhhcc-CCHHHHHHHHHHHHHhhccCchhHHHHHhc-----CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh
Q 010291 5 IPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVEC-----NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 78 (513)
Q Consensus 5 i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-----g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~ 78 (513)
+..++.+|+. .++++....+..+..+...++.....+.+. ....+++++|..++.-+...|+.+|..+......
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~ 134 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLA 134 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCcc
Confidence 4566777754 567888888888999988766666666653 5678888999988999999999999999764332
Q ss_pred HHHHHHhCCChHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC--CHHHHHHHHHHHHH
Q 010291 79 IKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGR 155 (513)
Q Consensus 79 ~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~ 155 (513)
........-..+.+...+.+. +.+.+..++.+|..+... ++.|..+.+.++++.|+++++.. +..+++.++.+++-
T Consensus 135 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWl 213 (429)
T cd00256 135 KMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWL 213 (429)
T ss_pred ccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 211111111233445555543 467788888999999855 66688888888999999999863 56899999999999
Q ss_pred HhhccccchhhHhcCChHHHHHHhcCC-CHHHHHHHHHHHHhcccCc-------chHHHHHhhcCcccccchh---hh--
Q 010291 156 LAQDMHNQAGIAHNGGLVPLLKLLDSK-NGSLQHNAAFALYGLADNE-------DNVADFIRVGGVQKLQDGE---FI-- 222 (513)
Q Consensus 156 l~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~g~i~~L~~~~---~~-- 222 (513)
|+.+++....+...+.++.++++++.. ..++.+-++.++.|+...+ .....++..|.++.+..+. ++
T Consensus 214 LSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~De 293 (429)
T cd00256 214 LTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDE 293 (429)
T ss_pred HhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcH
Confidence 998877666666778899999999765 4789999999999998732 2334556666655432111 10
Q ss_pred -----hhh----------------------------------hHHHHHHHHHHHHHHhhhhhHHHHHHHHH-Hhhcchhh
Q 010291 223 -----VQA----------------------------------TKDCVAKTLKRLEEKIHGRVLNHLLYLMR-VAEKGVQR 262 (513)
Q Consensus 223 -----~~~----------------------------------~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~-~~~~~v~~ 262 (513)
... ....|..+..++.. .+..++..|+.+|. +.|+.+..
T Consensus 294 dL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~-~~~~llk~L~~iL~~s~d~~~la 372 (429)
T cd00256 294 DLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNE-KNYELLKILIHLLETSVDPIILA 372 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHh-cchHHHHHHHHHHhcCCCcceee
Confidence 000 11223333333321 23457899999996 46788888
Q ss_pred hHHHHHhhccCC-CCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhcc
Q 010291 263 RVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 316 (513)
Q Consensus 263 ~a~~aL~~l~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 316 (513)
-||.=++.+++. |.+|..+-+.|+=..+++++.+++++++.+|..++..+..+.
T Consensus 373 VAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~~ 427 (429)
T cd00256 373 VACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVHN 427 (429)
T ss_pred hhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 899999999975 568888888899999999999999999999999998886553
No 39
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=2.7e-11 Score=112.67 Aligned_cols=312 Identities=15% Similarity=0.110 Sum_probs=230.5
Q ss_pred HHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhh
Q 010291 17 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 96 (513)
Q Consensus 17 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll 96 (513)
.+....|+..|.|++. +-..-..++...++..|+..|..++.++.......|-.++-. .+++..+.+.|++..|+.++
T Consensus 277 eqLLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klf 354 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLF 354 (791)
T ss_pred HHHHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhc
Confidence 3455667888999997 567777888889999999999988899999999999999866 56678889999999999999
Q ss_pred cCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHH
Q 010291 97 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL 176 (513)
Q Consensus 97 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~ 176 (513)
...+++++......|.|++ .+...+..++..|.+|.+..++.++. -...|...+..++.++..+..+.....++.+.
T Consensus 355 p~~h~dL~~~tl~LlfNlS-FD~glr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~lm 431 (791)
T KOG1222|consen 355 PIQHPDLRKATLMLLFNLS-FDSGLRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLM 431 (791)
T ss_pred CCCCHHHHHHHHHHhhhcc-ccccccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 55777899999999999999998764 23447888899998888888888888888888
Q ss_pred HHhcCC-CHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhh---------------hhhh-hH------------
Q 010291 177 KLLDSK-NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF---------------IVQA-TK------------ 227 (513)
Q Consensus 177 ~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~---------------~~~~-~~------------ 227 (513)
+.+-++ +.++-...+..-.|+|-+..+...+++..++..|.+..+ .+.. ..
T Consensus 432 k~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~ 511 (791)
T KOG1222|consen 432 KDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAG 511 (791)
T ss_pred HHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 766544 344444444444678877766666666555554432111 0000 00
Q ss_pred -----------HHHHHHHHHH--------HHHhhhhhHHHHHHHHHH--hhcchhhhHHHHHhhccCCCCcceeeecCCc
Q 010291 228 -----------DCVAKTLKRL--------EEKIHGRVLNHLLYLMRV--AEKGVQRRVALALAHLCSPDDQRTIFIDGGG 286 (513)
Q Consensus 228 -----------~~~~~~~~~~--------~~~~~~~~l~~Lv~lL~~--~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~ 286 (513)
.-+.+++.++ ..+.+...+|.+-..|+. ...+++....-+++.++....+...+..+|.
T Consensus 512 i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~ 591 (791)
T KOG1222|consen 512 IAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKL 591 (791)
T ss_pred HhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCcccc
Confidence 0111222222 112344556666666655 3456778888899999998888889999999
Q ss_pred hHHHHhhhcC--CCcchhhhHHHHHHHhhhccccccccCCCCCCCCCcc
Q 010291 287 LELLLGLLGS--TNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQV 333 (513)
Q Consensus 287 i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~~~~~~~ 333 (513)
|+.|+++++. .++++......+..++..+..++..+..+...+...+
T Consensus 592 i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylI 640 (791)
T KOG1222|consen 592 IDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLI 640 (791)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Confidence 9999999986 6677778888888888888666666666555544443
No 40
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.27 E-value=3e-11 Score=125.36 Aligned_cols=240 Identities=20% Similarity=0.218 Sum_probs=193.2
Q ss_pred CChhHHHHhhcc-----C-------CHHHHHHHHHHHHHhhccCchhHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHHH
Q 010291 3 GGIPPLVELLEF-----T-------DTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGVI 69 (513)
Q Consensus 3 g~i~~Lv~lL~~-----~-------~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a~~~L 69 (513)
|++..+-+|++- + +..+|..|..+|.||..|+..++..+-. .|.+..+|..|.+...++.+..+.+|
T Consensus 339 G~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvL 418 (2195)
T KOG2122|consen 339 GGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVL 418 (2195)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHH
Confidence 667777776642 1 2468999999999999998888777654 68899999999988889999999999
Q ss_pred HHhhcCChh-HHHHHHhCCChHHHHHhh-cCCChHHHHHHHHHHHHhhcCCchhhHHHHh-cCChHHHHHHhCCC----C
Q 010291 70 GNLVHSSPN-IKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQSP----D 142 (513)
Q Consensus 70 ~~l~~~~~~-~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~~----~ 142 (513)
+||+...+. .++.+.+.|-+..|+..- ...........+.+||||+.++.+++..+.. .|++..|+..|... .
T Consensus 419 RNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~t 498 (2195)
T KOG2122|consen 419 RNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNT 498 (2195)
T ss_pred HhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcch
Confidence 999975544 466677789999988754 4455566778889999999888888876654 89999999999754 5
Q ss_pred HHHHHHHHHHHHHHhhcc----ccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc-CcchHHHHHhhcCccccc
Q 010291 143 VQLREMSAFALGRLAQDM----HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQ 217 (513)
Q Consensus 143 ~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~ 217 (513)
..+.+.+-.+|.|++..- +.|..+.+.+.+..|++.|++.+-.+..++|++||||+. +++.+..+
T Consensus 499 LaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~L---------- 568 (2195)
T KOG2122|consen 499 LAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQML---------- 568 (2195)
T ss_pred hhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHH----------
Confidence 578899999999988543 346677788999999999999999999999999999975 66555444
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCC
Q 010291 218 DGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 275 (513)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~ 275 (513)
++.++++.|..++++.+..+-+.++.+|.|+....
T Consensus 569 -----------------------wD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 569 -----------------------WDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred -----------------------HhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 45567788889999988888899999999986543
No 41
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1e-10 Score=112.83 Aligned_cols=271 Identities=16% Similarity=0.102 Sum_probs=200.2
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhC----CChHHHHHhhcCCChHHHHHHHHHHHHhhcCCch
Q 010291 45 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA----GALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120 (513)
Q Consensus 45 g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 120 (513)
.++|.|.++|.+++....+.|..+|.+++.++.+.-+.-.-. -.+|.++++.+++.+.+|..|..++....-..+.
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q 207 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ 207 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH
Confidence 457889999999999999999999999999876643321111 2578889999999999999999999888744333
Q ss_pred hhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccC
Q 010291 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 200 (513)
Q Consensus 121 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 200 (513)
.. ...-..+++.+..+-.+++++||.+.|.++..|......+-.---.+.++-+++..++.|.++...|+.....+|..
T Consensus 208 al-~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq 286 (885)
T KOG2023|consen 208 AL-YVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ 286 (885)
T ss_pred HH-HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC
Confidence 22 22223577788888888999999999999999987666554333345666778888888999999999999999987
Q ss_pred cchHHHHHh--hcCcccccchhh---------------------------------------------------------
Q 010291 201 EDNVADFIR--VGGVQKLQDGEF--------------------------------------------------------- 221 (513)
Q Consensus 201 ~~~~~~~~~--~g~i~~L~~~~~--------------------------------------------------------- 221 (513)
+..+..+.. .+.+|.|++...
T Consensus 287 pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~ 366 (885)
T KOG2023|consen 287 PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAF 366 (885)
T ss_pred cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccccc
Confidence 744333221 233443322000
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH----hhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCC
Q 010291 222 IVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV----AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGST 297 (513)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~----~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~ 297 (513)
+....+.|-+.+++.+..++...+++.++.+|+. .++.+|+.+..+++.++.+--.-..-.=...+|.|+++|.++
T Consensus 367 ~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DK 446 (885)
T KOG2023|consen 367 SDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDK 446 (885)
T ss_pred ccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccC
Confidence 0123357888899999999999988888888876 678899999999999986532111000113689999999999
Q ss_pred CcchhhhHHHHHHHhhhcc
Q 010291 298 NPKQQLDGAVALFKLANKA 316 (513)
Q Consensus 298 ~~~v~~~a~~~L~~l~~~~ 316 (513)
.+-+|.-+||+|.+.+...
T Consensus 447 kplVRsITCWTLsRys~wv 465 (885)
T KOG2023|consen 447 KPLVRSITCWTLSRYSKWV 465 (885)
T ss_pred ccceeeeeeeeHhhhhhhH
Confidence 9999999999999987653
No 42
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.1e-09 Score=99.61 Aligned_cols=185 Identities=23% Similarity=0.273 Sum_probs=160.3
Q ss_pred cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHH
Q 010291 14 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 93 (513)
Q Consensus 14 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 93 (513)
+.+.+-+..|+.-|..++. +-++...+...|+...++..+++.+..+|+.|+++|+..+.++|..+..+++.|+++.|+
T Consensus 94 s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 3467889999999999997 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCC-hHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC--CCHHHHHHHHHHHHHHhhcccc-chhhHhc
Q 010291 94 GLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMHN-QAGIAHN 169 (513)
Q Consensus 94 ~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~ 169 (513)
..+.+++ .+++..|..+++++.+..+.....+...++...|...+++ .+..++..++..+..+...... +..+...
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 9998755 5778999999999999999999999998899999999998 5778889999999999855443 4444445
Q ss_pred CChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291 170 GGLVPLLKLLDSKNGSLQHNAAFALYGLAD 199 (513)
Q Consensus 170 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 199 (513)
+....+..+....+.++.+.++.++..+..
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 556567788888888888888887776654
No 43
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.12 E-value=4e-09 Score=108.44 Aligned_cols=288 Identities=19% Similarity=0.147 Sum_probs=190.6
Q ss_pred CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291 3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 82 (513)
Q Consensus 3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 82 (513)
-+.+.+++++.+++...+.-+--++..+...+++.... ++..+.+-|.++++.+|..|+++|++++ +++..+.
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~ 114 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL-----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP 114 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH
Confidence 46678888889999999999988899888866663332 3567777788999999999999999997 3444333
Q ss_pred HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc
Q 010291 83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 162 (513)
Q Consensus 83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 162 (513)
.++.+.+++.++++.+|+.|+.++..+...+|+... .. +++.+.+++.++++.++..|+.++..+ ..++.
T Consensus 115 -----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~ 184 (526)
T PF01602_consen 115 -----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVE---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDD 184 (526)
T ss_dssp -----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHH---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHH
T ss_pred -----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHH---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcc
Confidence 478889999999999999999999999877665322 22 588999999999999999999999999 21111
Q ss_pred chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHH--
Q 010291 163 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK-- 240 (513)
Q Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~-- 240 (513)
...-.-...+..|.+++...++..+..++..+..++........- ...++.+..... .........+.+.+..+
T Consensus 185 ~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~--s~~~~V~~e~~~~i~~l~~ 260 (526)
T PF01602_consen 185 SYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQ--SSSPSVVYEAIRLIIKLSP 260 (526)
T ss_dssp HHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHSS
T ss_pred hhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhh--ccccHHHHHHHHHHHHhhc
Confidence 101112234555666778889999999999999998754432200 111112211111 01111112222222221
Q ss_pred ---hhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291 241 ---IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 315 (513)
Q Consensus 241 ---~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 315 (513)
.-..+++.|..++.++++.++..++..|..++... ...+ . ..-..+..+..++++.++..+...|..++..
T Consensus 261 ~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v-~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~ 334 (526)
T PF01602_consen 261 SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAV-F-NQSLILFFLLYDDDPSIRKKALDLLYKLANE 334 (526)
T ss_dssp SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHH-G-THHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhh-h-hhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence 23456777888888777888888888888887654 1111 1 2223333333467778888888888887754
No 44
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=6.2e-07 Score=93.12 Aligned_cols=388 Identities=18% Similarity=0.115 Sum_probs=228.0
Q ss_pred hHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHh
Q 010291 6 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 85 (513)
Q Consensus 6 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 85 (513)
+.+-.+|+|+++..|..|+.+|+.++.|..+.-..... .+++..++.|+++++.||..|+.+++.++.+-...-+.-..
T Consensus 351 ~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~ 429 (1075)
T KOG2171|consen 351 EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHH 429 (1075)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHH
Confidence 44556778999999999999999999987665555333 47888889999999999999999999999877666566666
Q ss_pred CCChHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChH-HHHHHhCCCCHHHHHHHHHHHHHHhhccccc
Q 010291 86 AGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVR-PLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 163 (513)
Q Consensus 86 ~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 163 (513)
...++.|+..+++. ++.++.+|+.++.|++...+...-.-.-.+++. .+..++.++.+.+++.++.+|+.++......
T Consensus 430 e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~ 509 (1075)
T KOG2171|consen 430 ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK 509 (1075)
T ss_pred HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Confidence 77888999999874 679999999999999877665444333345666 3444556778999999999999998644433
Q ss_pred hhhHhcCChHHHHHHhcCCC-H---HHHHHHHHHHHhccc--CcchHHHHHhhcCcccccchhh----hhhhhHHHHHHH
Q 010291 164 AGIAHNGGLVPLLKLLDSKN-G---SLQHNAAFALYGLAD--NEDNVADFIRVGGVQKLQDGEF----IVQATKDCVAKT 233 (513)
Q Consensus 164 ~~~~~~~~i~~L~~ll~~~~-~---~~~~~a~~~L~~l~~--~~~~~~~~~~~g~i~~L~~~~~----~~~~~~~~~~~~ 233 (513)
-.-.-...++.|.+.+...+ . .++.....++.-++. ..+...... ...+..+..+.. ..+....+....
T Consensus 510 F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a-~eliqll~~~~~~~~~~dd~~~sy~~~~ 588 (1075)
T KOG2171|consen 510 FIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA-EELIQLLLELQGSDQDDDDPLRSYMIAF 588 (1075)
T ss_pred hHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH-HHHHHHHHhhcccchhhccccHHHHHHH
Confidence 22222455666777776655 2 234444445544432 211111111 011111111111 111122333333
Q ss_pred HHHHHHHhhhh-------hHHHHHHHHHH-hh-----------------------------------cchhhhHHHHHhh
Q 010291 234 LKRLEEKIHGR-------VLNHLLYLMRV-AE-----------------------------------KGVQRRVALALAH 270 (513)
Q Consensus 234 ~~~~~~~~~~~-------~l~~Lv~lL~~-~~-----------------------------------~~v~~~a~~aL~~ 270 (513)
..++-.+...+ +++.++.-.+- ++ .+-+..|+.+|+.
T Consensus 589 warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~ 668 (1075)
T KOG2171|consen 589 WARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGE 668 (1075)
T ss_pred HHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHH
Confidence 33333333322 23333222211 00 0114556777777
Q ss_pred ccCCCCcceeeecCCchH-HHHhhhcCCCcchhhhHHHHHHHhhhccccccccCCCCCCCCCcccchhhcccCCCcccEE
Q 010291 271 LCSPDDQRTIFIDGGGLE-LLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVT 349 (513)
Q Consensus 271 l~~~~~~~~~l~~~~~i~-~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~Dv~ 349 (513)
++........-.-..+++ .+..+.-.-+..+|..|+.++..+.+.....+
T Consensus 669 ~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~----------------------------- 719 (1075)
T KOG2171|consen 669 YAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKAC----------------------------- 719 (1075)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHh-----------------------------
Confidence 765433222111122334 23333345788999999999988876422111
Q ss_pred EEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHh-----cCccccCHHHHHHHHHHHH
Q 010291 350 FLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIY-----TGSVDVTLDIAQDLLRAAD 424 (513)
Q Consensus 350 ~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y-----~~~~~~~~~~~~~ll~~A~ 424 (513)
.+...+ +..-..+|+.+..+...+ +...++...+++-++ .|...+.++....+...-.
T Consensus 720 ---~~~p~~-----l~~l~~~~~~~l~~~l~~---------E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~ 782 (1075)
T KOG2171|consen 720 ---QGGPEY-----LKQLWEAIRPALIKALEE---------EPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLL 782 (1075)
T ss_pred ---ccChHH-----HHHHHHHHHHHHHHHhhc---------CCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHH
Confidence 011111 222333343333322111 123344444444444 2667788899999999988
Q ss_pred HhcHHHHHHHHHHHHHh
Q 010291 425 QYLLEGLKRLCEYTIAQ 441 (513)
Q Consensus 425 ~~~~~~l~~~c~~~l~~ 441 (513)
.......++.+...=..
T Consensus 783 ~~~l~~~~~~~~r~~~~ 799 (1075)
T KOG2171|consen 783 AQLLQHFKRMQDRQEED 799 (1075)
T ss_pred HHHHHHHHHHHhhhhhh
Confidence 88888888877665543
No 45
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.10 E-value=1.1e-09 Score=103.56 Aligned_cols=247 Identities=19% Similarity=0.239 Sum_probs=167.7
Q ss_pred HHHHHhhccCchhHHHHHhc---CCHHHHHHhhc-C-CCHHHHHHHHHHHHHhhcCChhHHHHHHh------CCChHHHH
Q 010291 25 GALRTLAFKNDENKNQIVEC---NALPTLILMLR-S-EDSAIHYEAVGVIGNLVHSSPNIKKEVLA------AGALQPVI 93 (513)
Q Consensus 25 ~~L~~l~~~~~~~~~~i~~~---g~i~~Lv~lL~-~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~g~i~~L~ 93 (513)
..+..+-....+.+..+++. +....++++|+ . ++.++.+..+..+..+..+.+...+.+.. ......++
T Consensus 32 ~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl 111 (312)
T PF03224_consen 32 SLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFL 111 (312)
T ss_dssp HHHHHHHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHH
Confidence 33444433233344444443 34667778887 3 78999999999999999988876666665 13678889
Q ss_pred HhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC----CCHHHHHHHHHHHHHHhhccccchhhHhc
Q 010291 94 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS----PDVQLREMSAFALGRLAQDMHNQAGIAHN 169 (513)
Q Consensus 94 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 169 (513)
+++..+|..+...|+..|..+....+....... .+.++.+++.+++ ++.+.+..++.+|.+|...++.|..+.+.
T Consensus 112 ~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~ 190 (312)
T PF03224_consen 112 KLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKS 190 (312)
T ss_dssp HH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhc
Confidence 999999999999999999999877665443322 3556777777664 45667899999999999999999999999
Q ss_pred CChHHHHHHh-----cC--CCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhh
Q 010291 170 GGLVPLLKLL-----DS--KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 242 (513)
Q Consensus 170 ~~i~~L~~ll-----~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (513)
++++.+..++ .+ .+.+++.+++.++|.|+.+++....+..
T Consensus 191 ~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~--------------------------------- 237 (312)
T PF03224_consen 191 NGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNK--------------------------------- 237 (312)
T ss_dssp HHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHT---------------------------------
T ss_pred CcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhc---------------------------------
Confidence 9999999999 22 2367889999999999999887666644
Q ss_pred hhhHHHHHHHHHH-hhcchhhhHHHHHhhccCCCC--cceeeecCCchHHHHhhhcC--CCcchhhhH
Q 010291 243 GRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGS--TNPKQQLDG 305 (513)
Q Consensus 243 ~~~l~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~~~--~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a 305 (513)
.++++.|+.+++. ....+-.-++.++.|++..+. ....++..|+++.+..+... +|+++....
T Consensus 238 ~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl 305 (312)
T PF03224_consen 238 KYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDL 305 (312)
T ss_dssp TSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHH
T ss_pred cchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHH
Confidence 3378888898887 566788889999999987665 66677777777777777654 677776553
No 46
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=99.10 E-value=3.5e-09 Score=98.53 Aligned_cols=268 Identities=20% Similarity=0.257 Sum_probs=199.1
Q ss_pred CCChhHHHHhhccCCH--HHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChh
Q 010291 2 EGGIPPLVELLEFTDT--KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPN 78 (513)
Q Consensus 2 ~g~i~~Lv~lL~~~~~--~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~ 78 (513)
.|++..|++++++++. +++.+|.+.|..+.. .++++.+...| ...++.+-+ ...++.....+.+|.++..++++
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 4788999999999874 569999999999884 68888888876 666666666 45788999999999999999999
Q ss_pred HHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcC-CchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010291 79 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 157 (513)
Q Consensus 79 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 157 (513)
..+.+++.|++..++...+..++.+.+.++.+|.|++-+ ..+.+..+++..+-++|..+-.+.|.-++.+||-+++.++
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vla 335 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLA 335 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999843 4466678899999999999988889999999999999999
Q ss_pred hccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHH
Q 010291 158 QDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL 237 (513)
Q Consensus 158 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~ 237 (513)
.+.+....+..+|.+..+-.++.+-|+..- +++.. ...+ |
T Consensus 336 t~KE~E~~VrkS~TlaLVEPlva~~DP~~F----------ARD~h---d~aQ-G-------------------------- 375 (832)
T KOG3678|consen 336 TNKEVEREVRKSGTLALVEPLVASLDPGRF----------ARDAH---DYAQ-G-------------------------- 375 (832)
T ss_pred hhhhhhHHHhhccchhhhhhhhhccCcchh----------hhhhh---hhhc-c--------------------------
Confidence 888887777778877665566655554421 11100 0000 0
Q ss_pred HHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccC--CCC-cceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhh
Q 010291 238 EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS--PDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 314 (513)
Q Consensus 238 ~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~--~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 314 (513)
...+.++.|+.+|++...+.|.-++.-++.=+. ... ..+.+.+-|+|..|-++..+++.--..-|..+|.-+.+
T Consensus 376 ---~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 376 ---RGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred ---CChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 123457788888887655555444433322211 112 23466777899999999887665555566666666554
Q ss_pred c
Q 010291 315 K 315 (513)
Q Consensus 315 ~ 315 (513)
.
T Consensus 453 E 453 (832)
T KOG3678|consen 453 E 453 (832)
T ss_pred c
Confidence 3
No 47
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.10 E-value=6.8e-10 Score=100.01 Aligned_cols=136 Identities=25% Similarity=0.335 Sum_probs=116.1
Q ss_pred eeehhhHHHHhhcCHHHHHhccCCCCCCCC----CceecCCCCHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHhcHH-
Q 010291 355 RRFYAHRICLLASSDAFRAMFDGGYREKDA----RDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLE- 429 (513)
Q Consensus 355 ~~~~~h~~il~~~s~~f~~~~~~~~~e~~~----~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~- 429 (513)
.++|+|+.+++ |.+||+.||.|+|.|++. +...+|.....+.+..++|+|+++.++.++-+.+++-.|+++.++
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~ 379 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALAD 379 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhh
Confidence 45999999998 899999999999999652 245677788899999999999999999999999999999999776
Q ss_pred -H-HHHHHHHHHHhc---CChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhhhhhh
Q 010291 430 -G-LKRLCEYTIAQD---ISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRI 491 (513)
Q Consensus 430 -~-l~~~c~~~l~~~---~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~ 491 (513)
. |+......+.+. ++.-|+.+++..+-....++|..++-.|+.+|+..+...|+|.......
T Consensus 380 dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~s 446 (516)
T KOG0511|consen 380 DRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRTS 446 (516)
T ss_pred hhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHhc
Confidence 2 555555555443 5666799999999999999999999999999999999999999875543
No 48
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=9.4e-09 Score=93.74 Aligned_cols=163 Identities=25% Similarity=0.328 Sum_probs=142.2
Q ss_pred CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHH
Q 010291 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIK 80 (513)
Q Consensus 2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~ 80 (513)
-|++.+++..+++++..+|..|+++|+.++++||..+..+.+.|+.+.|+..|.+ ++..++..|+.+++.+..+++...
T Consensus 123 ~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~ 202 (342)
T KOG2160|consen 123 LGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQ 202 (342)
T ss_pred ccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHH
Confidence 3788899999999999999999999999999999999999999999999999984 566788999999999999999999
Q ss_pred HHHHhCCChHHHHHhhcC--CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010291 81 KEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158 (513)
Q Consensus 81 ~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 158 (513)
..+...++...|...+.+ .+...+..++..+..+...+......+...++...+..+....+.++.+.+..++..+..
T Consensus 203 ~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 203 DEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 999999999999999998 456778999999999998777777766677777777777777888899999888887775
Q ss_pred ccccch
Q 010291 159 DMHNQA 164 (513)
Q Consensus 159 ~~~~~~ 164 (513)
....+.
T Consensus 283 ~~~~~~ 288 (342)
T KOG2160|consen 283 ELSTRK 288 (342)
T ss_pred HHhhcc
Confidence 444443
No 49
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=9.1e-09 Score=91.02 Aligned_cols=299 Identities=16% Similarity=0.141 Sum_probs=199.3
Q ss_pred CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 010291 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 80 (513)
Q Consensus 2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 80 (513)
..-+..++++|.+.+|.++..|...+..++.+ ..+.... +...++.+.++++..++ .+.|+.+|.|++.+ +..+
T Consensus 2 ~s~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~ 76 (353)
T KOG2973|consen 2 TSELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELR 76 (353)
T ss_pred chHHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHH
Confidence 34456789999999999999999999988864 2222222 23467888899886666 77788999999977 7777
Q ss_pred HHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHh------cCChHHHHHHhCCC-CH-HHHHHHHHH
Q 010291 81 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ------RGAVRPLIEMLQSP-DV-QLREMSAFA 152 (513)
Q Consensus 81 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~L~~~l~~~-~~-~~~~~a~~~ 152 (513)
+.+++. .+..++..+.++...+....+..|.|+++.+......+.. .|.+.........+ +. .--.+.+..
T Consensus 77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 777776 7778888888887888899999999999776655443322 44555444544443 21 233677889
Q ss_pred HHHHhhccccchhhHhcCChHH--HHHHhcCCCHHH-HHHHHHHHHhcccCcchHHHHHhhc--CcccccchhhhhhhhH
Q 010291 153 LGRLAQDMHNQAGIAHNGGLVP--LLKLLDSKNGSL-QHNAAFALYGLADNEDNVADFIRVG--GVQKLQDGEFIVQATK 227 (513)
Q Consensus 153 L~~l~~~~~~~~~~~~~~~i~~--L~~ll~~~~~~~-~~~a~~~L~~l~~~~~~~~~~~~~g--~i~~L~~~~~~~~~~~ 227 (513)
+.|++....+|..+.+...++. ++.+-. .+..+ +...+++|.|.|.+...+..++..+ .++.+.-.
T Consensus 156 f~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlP-------- 226 (353)
T KOG2973|consen 156 FANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLP-------- 226 (353)
T ss_pred HHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhh--------
Confidence 9999998888888877654332 444444 44444 4567889999999888877776522 11111000
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHH-----HhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcC-CCcch
Q 010291 228 DCVAKTLKRLEEKIHGRVLNHLLYLMR-----VAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQ 301 (513)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~Lv~lL~-----~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v 301 (513)
+++ .+.+++- +..-+|.=+++|. .+++.++..-+.+|..||....+|..+...|+.+.+-.+-.. .++++
T Consensus 227 --lag-pee~sEE-dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~ 302 (353)
T KOG2973|consen 227 --LAG-PEELSEE-DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDI 302 (353)
T ss_pred --cCC-ccccCHH-HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHH
Confidence 000 0001000 1112333335554 268899999999999999999999999888887777777665 66677
Q ss_pred hhhHHHHHHHhhhccccc
Q 010291 302 QLDGAVALFKLANKATTL 319 (513)
Q Consensus 302 ~~~a~~~L~~l~~~~~~~ 319 (513)
++.+-...-.+.+..+..
T Consensus 303 ~~ace~vvq~Lv~~e~~~ 320 (353)
T KOG2973|consen 303 REACEQVVQMLVRLEPEI 320 (353)
T ss_pred HHHHHHHHHHHHhccccc
Confidence 655555555455543333
No 50
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.4e-08 Score=95.01 Aligned_cols=312 Identities=15% Similarity=0.158 Sum_probs=206.0
Q ss_pred CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291 3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 82 (513)
Q Consensus 3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 82 (513)
+++..|+..|...+.+........|..++. -.+++..+.+.|++..|+.+...++++++...+..|.|++.+ ...|..
T Consensus 304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD-~glr~K 381 (791)
T KOG1222|consen 304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFD-SGLRPK 381 (791)
T ss_pred hHHHHHHHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccc-ccccHH
Confidence 356778888988888888888999999988 679999999999999999999999999999999999999988 567889
Q ss_pred HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHhhccc
Q 010291 83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMH 161 (513)
Q Consensus 83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~ 161 (513)
+++.|.+|.+..++.++... .-|...|..++ .+...+..+....+++.+++.+-+ .+.++-......-.|+|.+..
T Consensus 382 Mv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S-~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR 458 (791)
T KOG1222|consen 382 MVNGGLLPHLASLLDSDTKH--GIALNMLYHLS-CDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKR 458 (791)
T ss_pred HhhccchHHHHHHhCCcccc--hhhhhhhhhhc-cCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccc
Confidence 99999999999999876542 22455666664 445556666677888888876654 355554444555567777666
Q ss_pred cchhhHhcCChHHHHHH------------h-------------------------cCC-CHHHHHHHHHHHHhcccCcch
Q 010291 162 NQAGIAHNGGLVPLLKL------------L-------------------------DSK-NGSLQHNAAFALYGLADNEDN 203 (513)
Q Consensus 162 ~~~~~~~~~~i~~L~~l------------l-------------------------~~~-~~~~~~~a~~~L~~l~~~~~~ 203 (513)
+.+.+.+-.++..|++. + ... +......++++++||.-..-.
T Consensus 459 NaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dld 538 (791)
T KOG1222|consen 459 NAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLD 538 (791)
T ss_pred cceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCC
Confidence 55444443333332221 1 111 123334455566666542222
Q ss_pred HHHHH-hhcCcccccchh-h-------hhhhhHHHHHHHH--HHHHHHhhhhhHHHHHHHHHH--hhcchhhhHHHHHhh
Q 010291 204 VADFI-RVGGVQKLQDGE-F-------IVQATKDCVAKTL--KRLEEKIHGRVLNHLLYLMRV--AEKGVQRRVALALAH 270 (513)
Q Consensus 204 ~~~~~-~~g~i~~L~~~~-~-------~~~~~~~~~~~~~--~~~~~~~~~~~l~~Lv~lL~~--~~~~v~~~a~~aL~~ 270 (513)
-..++ ....+|.+-... . ..+..--|-..+. ....-+..+++++.++++|+. .+.+.......+...
T Consensus 539 w~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q 618 (791)
T KOG1222|consen 539 WAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQ 618 (791)
T ss_pred HHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 23333 334444332100 0 0111111111111 111223567899999999998 566777777777777
Q ss_pred ccCCCCcceeeecC-CchHHHHhhhcCCCcchhhhHHHHHHHhhhccccc
Q 010291 271 LCSPDDQRTIFIDG-GGLELLLGLLGSTNPKQQLDGAVALFKLANKATTL 319 (513)
Q Consensus 271 l~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 319 (513)
+...+..|..+++. ..-..|+.++.+.+.++|+-+-.+|--++.+...+
T Consensus 619 ~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EW 668 (791)
T KOG1222|consen 619 FLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEW 668 (791)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHH
Confidence 77665555544444 44577999999999999988888887777665433
No 51
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.05 E-value=1.8e-08 Score=93.10 Aligned_cols=300 Identities=14% Similarity=0.187 Sum_probs=206.1
Q ss_pred hHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcC-CHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291 6 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN-ALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEV 83 (513)
Q Consensus 6 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g-~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~ 83 (513)
++.+.+|...+.-+...+.++++.++......-.. .+.. ....+-..+++ .+++.+..+++||..+... ++.|-.+
T Consensus 117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~-~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~ 194 (442)
T KOG2759|consen 117 LSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMEL-SELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAF 194 (442)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhhee
Confidence 56678888888888888999999887632221111 0000 11233344553 6788888999999999977 6778888
Q ss_pred HhCCChHHHHHhhc-C-CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC-CHHHHHHHHHHHHHHhhcc
Q 010291 84 LAAGALQPVIGLLS-S-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDM 160 (513)
Q Consensus 84 ~~~g~i~~L~~ll~-~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~~~ 160 (513)
...+++..++..+. + .+..+++..+.+++.|+.. |...+.+...+.++.|..++++. .++|.+.++.++.|+....
T Consensus 195 v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~ 273 (442)
T KOG2759|consen 195 VIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKG 273 (442)
T ss_pred eecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 88999999999883 2 4689999999999999855 55456667788999999999976 7789999999999999766
Q ss_pred ccc---h----hhHhcCChHHHHHHhcCC---CHHHHHHH-------HHHHHhcccCcchHHHHHhhcCcccccchhhhh
Q 010291 161 HNQ---A----GIAHNGGLVPLLKLLDSK---NGSLQHNA-------AFALYGLADNEDNVADFIRVGGVQKLQDGEFIV 223 (513)
Q Consensus 161 ~~~---~----~~~~~~~i~~L~~ll~~~---~~~~~~~a-------~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~ 223 (513)
+.+ + .++. +.+++.++.|... |+++.... -.-.-.|+.-++...++ ..|.+.- ...
T Consensus 274 ~~~~~~k~~~~~mv~-~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl-~sG~L~W-----SP~ 346 (442)
T KOG2759|consen 274 PDRETKKDIASQMVL-CKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSEL-RSGRLEW-----SPV 346 (442)
T ss_pred chhhHHHHHHHHHHh-cCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH-HhCCcCC-----Ccc
Confidence 432 2 2333 4445555555432 34433221 12223333333333332 2232210 012
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh-hcchhhhHHHHHhhccCC-CCcceeeecCCchHHHHhhhcCCCcch
Q 010291 224 QATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQ 301 (513)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~-~~~v~~~a~~aL~~l~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v 301 (513)
+.....|..+...+.+. +-.++..|+.+|+.+ ||.+..-||.=++...+. |+++..+.+-||=+.+++++++++|+|
T Consensus 347 Hk~e~FW~eNa~rlnen-nyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~V 425 (442)
T KOG2759|consen 347 HKSEKFWRENADRLNEN-NYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEV 425 (442)
T ss_pred ccccchHHHhHHHHhhc-cHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchH
Confidence 22334555555555432 345889999999985 588888889999999874 778989999999999999999999999
Q ss_pred hhhHHHHHHHhhhcc
Q 010291 302 QLDGAVALFKLANKA 316 (513)
Q Consensus 302 ~~~a~~~L~~l~~~~ 316 (513)
+..|..|+..+..+.
T Consensus 426 ry~ALlavQ~lm~~~ 440 (442)
T KOG2759|consen 426 RYHALLAVQKLMVHN 440 (442)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999998887653
No 52
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.2e-08 Score=101.56 Aligned_cols=259 Identities=16% Similarity=0.150 Sum_probs=191.6
Q ss_pred hHHHHhhccC-CHHHHHHHHHHHHH-hhccCchhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291 6 PPLVELLEFT-DTKVQRAAAGALRT-LAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKE 82 (513)
Q Consensus 6 ~~Lv~lL~~~-~~~~~~~a~~~L~~-l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~ 82 (513)
..|++-|+.. ++..|.+|+.-|.. ++.++++.-..+--..++|.|+.+|++ .+.+++..|+++|.+|+.--|.....
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence 3455555443 77788888776664 455666666655556789999999994 58999999999999999988888899
Q ss_pred HHhCCChHHHHHhhc-CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccc
Q 010291 83 VLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH 161 (513)
Q Consensus 83 ~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 161 (513)
+++.++||.|+.-|- -...++.+.++.+|..+++..+ ..+.+.|.+...+..+.--...+++.|+.+..|+|..-.
T Consensus 250 vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred eecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999988654 4678999999999999986544 457788999999999987788899999999999996543
Q ss_pred cchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHh
Q 010291 162 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 241 (513)
Q Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (513)
.-..-.-..++|.|..+|+..+.+..+.++-++..++..-.... +.++.+.
T Consensus 327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~-----------------------------~kLdql~ 377 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGP-----------------------------DKLDQLC 377 (1051)
T ss_pred CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccCh-----------------------------HHHHHHh
Confidence 32222223578899999999999999999999998876322111 1334445
Q ss_pred hhhhHHHHHHHHHHhhc----chhhhHHHHHhhccCC-CCcceeeecCCchHHHHhhhcC
Q 010291 242 HGRVLNHLLYLMRVAEK----GVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGS 296 (513)
Q Consensus 242 ~~~~l~~Lv~lL~~~~~----~v~~~a~~aL~~l~~~-~~~~~~l~~~~~i~~L~~ll~~ 296 (513)
..+.+....+++..... .+.....+.+..+|++ +.....+.+.+....|..++..
T Consensus 378 s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 378 SHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred chhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 56666666676665422 2344455667777766 4466667777777888887764
No 53
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.00 E-value=5.6e-09 Score=107.40 Aligned_cols=286 Identities=19% Similarity=0.186 Sum_probs=192.6
Q ss_pred hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 84 (513)
Q Consensus 5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 84 (513)
+..+..-|+++++.++..|++++++++. ++.... +++.+.+++.++++.||+.|+.++.++....++.-.
T Consensus 81 ~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~--- 150 (526)
T PF01602_consen 81 INSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVE--- 150 (526)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHH---
T ss_pred HHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHH---
Confidence 3556677889999999999999999984 554444 377888999999999999999999999877665421
Q ss_pred hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccch
Q 010291 85 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA 164 (513)
Q Consensus 85 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 164 (513)
.. .++.+..++.+.++.++..|+.++..+ ..++.... -.-...++.|.+++..+++..+..++..+..++.......
T Consensus 151 ~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~ 227 (526)
T PF01602_consen 151 DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDA 227 (526)
T ss_dssp GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHH
T ss_pred HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhh
Confidence 12 588899999999999999999999999 22222111 1122345666677788999999999999998875443322
Q ss_pred hhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhh-hHHHHHHHHHHHHHHhhh
Q 010291 165 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQA-TKDCVAKTLKRLEEKIHG 243 (513)
Q Consensus 165 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 243 (513)
.- ...+..+..++.+.++.+...++.++..+........ .+++.|.....+.+. .+-....++..+......
T Consensus 228 ~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~-----~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~ 300 (526)
T PF01602_consen 228 DK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQ-----KAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPP 300 (526)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHH-----HHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHH
T ss_pred hH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHH-----hhHHHHHHHhhcccchhehhHHHHHHHhhcccch
Confidence 10 3567778888888888899999999998877655222 222233322221111 222222233333111100
Q ss_pred h--hHHHHHHHHH-HhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhc-CCCcchhhhHHHHHHHhhhcc
Q 010291 244 R--VLNHLLYLMR-VAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVALFKLANKA 316 (513)
Q Consensus 244 ~--~l~~Lv~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~ 316 (513)
. .....+..+. +.+..++..++..|..++...+... .++.|.+.+. ..+++++..++..+..++...
T Consensus 301 ~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~------Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 301 AVFNQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKE------ILDELLKYLSELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp HHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHH------HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhheecCCCChhHHHHHHHHHhhcccccchhh------HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 0 2223344555 6888999999999999986544443 5788888884 458889999999999998764
No 54
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.99 E-value=4.3e-08 Score=95.43 Aligned_cols=307 Identities=15% Similarity=0.123 Sum_probs=222.1
Q ss_pred hhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChhHHHHHHhCCC
Q 010291 11 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 88 (513)
Q Consensus 11 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 88 (513)
-+.+.+|+...+|..-..+.+.++++.+..+++.|.++.++.++.. +..+.......++..+....+.....+.+.+.
T Consensus 17 ~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ 96 (678)
T KOG1293|consen 17 RLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIE 96 (678)
T ss_pred hhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhh
Confidence 3456788888899999999999999999999999999999999984 45667767777888888887888899999999
Q ss_pred hHHHHHhhcCCC-hHHHHHHHHHHHHhhcCCchhhH--HHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchh
Q 010291 89 LQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKV--HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG 165 (513)
Q Consensus 89 i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~ 165 (513)
++.|++++.+.+ ..++.....++.++.+.++.... .......++.+..+...+.......-+....+++.....+..
T Consensus 97 ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~I 176 (678)
T KOG1293|consen 97 LLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLI 176 (678)
T ss_pred HHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhhhe
Confidence 999999999988 78899999999999877654332 233344566666555535555666667777888887778888
Q ss_pred hHhcCChHHHHHHhcCCCHHHHHHHHHHHH---hcccCcchH-HHHH----hhcCccc-----ccc-hhhhh--------
Q 010291 166 IAHNGGLVPLLKLLDSKNGSLQHNAAFALY---GLADNEDNV-ADFI----RVGGVQK-----LQD-GEFIV-------- 223 (513)
Q Consensus 166 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~---~l~~~~~~~-~~~~----~~g~i~~-----L~~-~~~~~-------- 223 (513)
+.+.|..+.+.-++...+...+..|+.+++ ++..+++.. ..+. ..|..+. |.. ..++.
T Consensus 177 l~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl 256 (678)
T KOG1293|consen 177 LCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECL 256 (678)
T ss_pred eccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHH
Confidence 888888888888877777788888888888 555433322 2221 1121111 000 00000
Q ss_pred ----------------------------------------------hhhHHHHHH--------------HH---------
Q 010291 224 ----------------------------------------------QATKDCVAK--------------TL--------- 234 (513)
Q Consensus 224 ----------------------------------------------~~~~~~~~~--------------~~--------- 234 (513)
...-.|... +.
T Consensus 257 ~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~ 336 (678)
T KOG1293|consen 257 VPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFI 336 (678)
T ss_pred HHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHH
Confidence 000000000 00
Q ss_pred ----------------------------------HHH---------------------------------------HHHh
Q 010291 235 ----------------------------------KRL---------------------------------------EEKI 241 (513)
Q Consensus 235 ----------------------------------~~~---------------------------------------~~~~ 241 (513)
+.+ ....
T Consensus 337 ~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~ 416 (678)
T KOG1293|consen 337 CASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLK 416 (678)
T ss_pred HHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 000 0002
Q ss_pred hhhhHHHHHHHHHHhhcchhhhHHHHHhhccCC-CCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291 242 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 317 (513)
Q Consensus 242 ~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 317 (513)
..++..+|++++..++.-++..++++|+|+... .+.+..++..|||+.+..++.+.++..+..+.|+|+++.-++.
T Consensus 417 ~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~d 493 (678)
T KOG1293|consen 417 RNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCD 493 (678)
T ss_pred cchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcch
Confidence 335778899999889999999999999999764 6677889999999999999999999999999999999986654
No 55
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=8e-07 Score=88.31 Aligned_cols=289 Identities=14% Similarity=0.187 Sum_probs=198.5
Q ss_pred ChhHHHHhhccC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCh---
Q 010291 4 GIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSP--- 77 (513)
Q Consensus 4 ~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~~l~~~~~--- 77 (513)
-|+.|++-+.+. -.+-|+.|++.|..+++ ..|..+.. .|++++++.|.. .|+++...++.++.++....+
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 367778777654 47889999999999997 55665544 468999999983 589999999999999986542
Q ss_pred ---hH----------HHHHH-hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCc-hhhHHHH-hcCChHHHHHHhCCC
Q 010291 78 ---NI----------KKEVL-AAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIV-QRGAVRPLIEMLQSP 141 (513)
Q Consensus 78 ---~~----------~~~~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~-~~~~i~~L~~~l~~~ 141 (513)
+. .+.++ ..+.|..++..++..|..||..+...+.++.+..+ +.++.+. .+-++..++.+|.+.
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds 178 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS 178 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh
Confidence 11 12333 45789999999999999999999999999987665 4444443 466899999999999
Q ss_pred CHHHHHHHHHHHHHHhhcccc-chhhHhcCChHHHHHHhcCC---C-HHHHHHHHHHHHhccc-CcchHHHHHhhcCccc
Q 010291 142 DVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSK---N-GSLQHNAAFALYGLAD-NEDNVADFIRVGGVQK 215 (513)
Q Consensus 142 ~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~---~-~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~ 215 (513)
...+|..++..|..+..++.. ++.++-++++..|+.++... + .-+.+.++..|.||-. +..++..+.+.+.|+.
T Consensus 179 rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~r 258 (970)
T KOG0946|consen 179 REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPR 258 (970)
T ss_pred hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHH
Confidence 999999999999999987766 55566688899999998753 2 3477888899999987 5556666666666665
Q ss_pred ccchhhhhhhhH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCC-------CcceeeecCCch
Q 010291 216 LQDGEFIVQATK-DCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-------DQRTIFIDGGGL 287 (513)
Q Consensus 216 L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~-------~~~~~l~~~~~i 287 (513)
|.+......... ....++-.++ .+ -..++.++..++... .+++.+...+++
T Consensus 259 L~klL~~f~~~d~Ev~~W~~Qrv---~N------------------v~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll 317 (970)
T KOG0946|consen 259 LLKLLSVFEFGDGEVFGWSTQRV---QN------------------VIEALQIVRSLVSPGNTSSITHQNQKALVSSHLL 317 (970)
T ss_pred HHhhcCcccccCcccccccHHHH---HH------------------HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchH
Confidence 543111000000 0000000000 00 112223333333221 133466778889
Q ss_pred HHHHhhhcCC--CcchhhhHHHHHHHhhhccc
Q 010291 288 ELLLGLLGST--NPKQQLDGAVALFKLANKAT 317 (513)
Q Consensus 288 ~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~ 317 (513)
..|..++.++ ..+++..+..++.+..+...
T Consensus 318 ~~Lc~il~~~~vp~dIltesiitvAevVRgn~ 349 (970)
T KOG0946|consen 318 DVLCTILMHPGVPADILTESIITVAEVVRGNA 349 (970)
T ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHHHHHhch
Confidence 9999988774 44677777777877776654
No 56
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.92 E-value=1.9e-07 Score=100.85 Aligned_cols=228 Identities=22% Similarity=0.198 Sum_probs=138.4
Q ss_pred CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-----
Q 010291 3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP----- 77 (513)
Q Consensus 3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~----- 77 (513)
++++.|++.|+++++.+|..|+.+|..+....+ ..+.+...|.++++.+|..|+.+|..+.....
T Consensus 652 ~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~ 721 (897)
T PRK13800 652 GFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----------PAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAA 721 (897)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----------chHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHH
Confidence 457889999999999999999999988853111 12344455555555555555555544321100
Q ss_pred -------hHHHH----HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHH
Q 010291 78 -------NIKKE----VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLR 146 (513)
Q Consensus 78 -------~~~~~----~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~ 146 (513)
..|.. +...+..+.|..++.++++++|..++.+|..+....+ ..++.|..+++++++.++
T Consensus 722 ~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR 792 (897)
T PRK13800 722 ALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVR 792 (897)
T ss_pred HhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHH
Confidence 00000 0011223445556666666666666666666642211 236778888888888999
Q ss_pred HHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhh
Q 010291 147 EMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQAT 226 (513)
Q Consensus 147 ~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~ 226 (513)
..|+.+|.++.... ..+..+...+.++++.++..|+.+|..+.... ....+. .... +..
T Consensus 793 ~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~-a~~~L~---------~~L~--D~~ 851 (897)
T PRK13800 793 AAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAADV-AVPALV---------EALT--DPH 851 (897)
T ss_pred HHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhccccc-hHHHHH---------HHhc--CCC
Confidence 88888888874311 12245778888888889999999998875422 211111 1110 111
Q ss_pred HHHHHHHHHHHHHH-hhhhhHHHHHHHHHHhhcchhhhHHHHHhh
Q 010291 227 KDCVAKTLKRLEEK-IHGRVLNHLLYLMRVAEKGVQRRVALALAH 270 (513)
Q Consensus 227 ~~~~~~~~~~~~~~-~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~ 270 (513)
......+...+..+ .+....+.|...+++.+..||..|..+|..
T Consensus 852 ~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 852 LDVRKAAVLALTRWPGDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 22223333334333 355678889999999999999999999863
No 57
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2e-07 Score=93.09 Aligned_cols=193 Identities=21% Similarity=0.236 Sum_probs=150.5
Q ss_pred CChhHHHHhhccC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHH
Q 010291 3 GGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIK 80 (513)
Q Consensus 3 g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~ 80 (513)
-.+|.|+.+|+++ +.+++..|+++|.+++.--|+....+++.++||.|+.-|. -+--++.++++.+|-.|++..+
T Consensus 211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--- 287 (1051)
T KOG0168|consen 211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--- 287 (1051)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---
Confidence 3578999999875 6999999999999999988999999999999999997665 5678999999999999997543
Q ss_pred HHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcC-CchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291 81 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 159 (513)
Q Consensus 81 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~ 159 (513)
..+++.|++...+.+++-....+++.|+.+..|+|.. .++.-..++ ..+|.|..+|+..|.+..+.++-++..++..
T Consensus 288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~ 365 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADG 365 (1051)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 5678899999999999888889999999999999943 223233344 4799999999999999999999999999865
Q ss_pred ccc----chhhHhcCChHHHHHHhcCCC----HHHHHHHHHHHHhcccC
Q 010291 160 MHN----QAGIAHNGGLVPLLKLLDSKN----GSLQHNAAFALYGLADN 200 (513)
Q Consensus 160 ~~~----~~~~~~~~~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~ 200 (513)
... -..+...+.+....+++.-.. ..+....++.+..+|.+
T Consensus 366 f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~ 414 (1051)
T KOG0168|consen 366 FQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSG 414 (1051)
T ss_pred cccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccC
Confidence 533 233455566666666665332 23334445555555543
No 58
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.89 E-value=5.8e-08 Score=91.87 Aligned_cols=207 Identities=17% Similarity=0.220 Sum_probs=150.6
Q ss_pred hHHHHhhc--cCCHHHHHHHHHHHHHhhccCchhHHHHHh------cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh
Q 010291 6 PPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVE------CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP 77 (513)
Q Consensus 6 ~~Lv~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~------~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~ 77 (513)
..++.+|+ +.++++....+..+..+...++.....+.. .....++++++..+|.-++..|+..|..+....+
T Consensus 58 ~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~ 137 (312)
T PF03224_consen 58 SLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGP 137 (312)
T ss_dssp ----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC
Confidence 44555554 367889999999999999877766666655 2367889999888999999999999999987655
Q ss_pred hHHHHHHhCCChHHHHHhhcC----CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHh------C-CCCHHHH
Q 010291 78 NIKKEVLAAGALQPVIGLLSS----CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML------Q-SPDVQLR 146 (513)
Q Consensus 78 ~~~~~~~~~g~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l------~-~~~~~~~ 146 (513)
....... .+.++.++..+.+ ++.+++..++.+|.++. ..++.|..+.+.++++.+.+++ . ..+..++
T Consensus 138 ~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~ 215 (312)
T PF03224_consen 138 KRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ 215 (312)
T ss_dssp T--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSHHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred ccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh-CcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence 5433211 3456777777664 44567789999999998 5578899999999999999999 2 2367889
Q ss_pred HHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCC-CHHHHHHHHHHHHhcccCcc--hHHHHHhhcCcc
Q 010291 147 EMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK-NGSLQHNAAFALYGLADNED--NVADFIRVGGVQ 214 (513)
Q Consensus 147 ~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~--~~~~~~~~g~i~ 214 (513)
++++.++|-|+.+++....+...+.++.|+++++.. .+++.+-++.++.|+..... ....++..|+++
T Consensus 216 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~ 286 (312)
T PF03224_consen 216 YQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLK 286 (312)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHH
T ss_pred HHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHH
Confidence 999999999999999988898888888899888754 58899999999999998655 666666655433
No 59
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1.1e-07 Score=92.54 Aligned_cols=158 Identities=17% Similarity=0.149 Sum_probs=118.5
Q ss_pred ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHh----cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH
Q 010291 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE----CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 79 (513)
Q Consensus 4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~----~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 79 (513)
++|.|.++|.+++...++.|..+|.++++++++.-..=.. .-.+|.++++.+++++.+|..|+.++..+.-....
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q- 207 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ- 207 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH-
Confidence 5789999999999999999999999999865543332111 13588899999999999999999999888754322
Q ss_pred HHHHHhC-CChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010291 80 KKEVLAA-GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158 (513)
Q Consensus 80 ~~~~~~~-g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 158 (513)
...... ..++.+..+-++.+++||+..|.+|..|....++.... .-.++++.++...++.|.++...||.....++.
T Consensus 208 -al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p-hl~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 208 -ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP-HLDNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred -HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc-chHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 222221 24556666667889999999999999998665542211 124677778888888899999999999999998
Q ss_pred ccccch
Q 010291 159 DMHNQA 164 (513)
Q Consensus 159 ~~~~~~ 164 (513)
.+-.+.
T Consensus 286 qpi~~~ 291 (885)
T KOG2023|consen 286 QPICKE 291 (885)
T ss_pred CcCcHH
Confidence 774443
No 60
>PTZ00429 beta-adaptin; Provisional
Probab=98.83 E-value=4.7e-07 Score=93.76 Aligned_cols=217 Identities=16% Similarity=0.085 Sum_probs=111.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHh
Q 010291 48 PTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ 127 (513)
Q Consensus 48 ~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 127 (513)
..+.+=+.++|+.+|..|+++|+++-. +...+. .+..+.+.+.+.++-||+.|+.++.++...+++ .+.+
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~ 177 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQ 177 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccc
Confidence 344444445555555555555555532 121111 234445555555566666666666665544332 1223
Q ss_pred cCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHH
Q 010291 128 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 207 (513)
Q Consensus 128 ~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 207 (513)
.|+++.|.+++.+.++.++.+|+.+|..+....+.+- -...+.+..|+..+.+.++..+...+.+|.......+.
T Consensus 178 ~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~---- 252 (746)
T PTZ00429 178 QDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKE---- 252 (746)
T ss_pred cchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcH----
Confidence 4455555555555566666666666655553322211 11122333444444444455555555554332111000
Q ss_pred HhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecC---
Q 010291 208 IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDG--- 284 (513)
Q Consensus 208 ~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~--- 284 (513)
....++..+...|++.++.|...|++++.++....+ . .+.+.
T Consensus 253 ---------------------------------e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~-~-~~~~~~~~ 297 (746)
T PTZ00429 253 ---------------------------------SAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCS-Q-ELIERCTV 297 (746)
T ss_pred ---------------------------------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCC-H-HHHHHHHH
Confidence 012467777888888889999999999988865321 0 01110
Q ss_pred CchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291 285 GGLELLLGLLGSTNPKQQLDGAVALFKLANK 315 (513)
Q Consensus 285 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 315 (513)
...+.|+.+ .++++++|.-+...+..+...
T Consensus 298 rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~ 327 (746)
T PTZ00429 298 RVNTALLTL-SRRDAETQYIVCKNIHALLVI 327 (746)
T ss_pred HHHHHHHHh-hCCCccHHHHHHHHHHHHHHH
Confidence 112445555 456778888877777666554
No 61
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=1.5e-07 Score=97.56 Aligned_cols=307 Identities=14% Similarity=0.096 Sum_probs=185.1
Q ss_pred ChhHHHHhhccCCHHHHHHHHHHHHHhhccCc-hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 82 (513)
Q Consensus 4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 82 (513)
.++.|.+..+|+++..|+.|+.+|..+...-. ..+..+. .+.+.+.+.+.+++..+|..|+++++.++...++.+..
T Consensus 119 ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~ 196 (1075)
T KOG2171|consen 119 LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSE 196 (1075)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHH
Confidence 35566666788999999999999999976311 1111111 13455566677666569999999999998766433222
Q ss_pred HHh-CCChHHHHHhh----cCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC--CHHHHHHHHHHHHH
Q 010291 83 VLA-AGALQPVIGLL----SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGR 155 (513)
Q Consensus 83 ~~~-~g~i~~L~~ll----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~ 155 (513)
.-. ...+|.++..+ ..++.+....+..+|..+....+........ .++...+.+.++. +..+|..|+..|..
T Consensus 197 ~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs 275 (1075)
T KOG2171|consen 197 VDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVS 275 (1075)
T ss_pred HHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 222 13455555544 4567777788888999998776654443322 3555555666554 78899999999999
Q ss_pred Hhhccccchhh---HhcCChHHHHHHhcCCC----------------HHHHHHHHHHHHhcccCcch---HHHHHhhcCc
Q 010291 156 LAQDMHNQAGI---AHNGGLVPLLKLLDSKN----------------GSLQHNAAFALYGLADNEDN---VADFIRVGGV 213 (513)
Q Consensus 156 l~~~~~~~~~~---~~~~~i~~L~~ll~~~~----------------~~~~~~a~~~L~~l~~~~~~---~~~~~~~g~i 213 (513)
++...+...+. .-...++.++.++.... ......|..+|-.++.+-.. ...+.+ .+
T Consensus 276 ~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~--~l 353 (1075)
T KOG2171|consen 276 LSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFE--AL 353 (1075)
T ss_pred HHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHH--HH
Confidence 98774332111 11122344444443110 11344566677666653221 111111 12
Q ss_pred ccccchhh---h---hhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCC--CCcceeeecCC
Q 010291 214 QKLQDGEF---I---VQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQRTIFIDGG 285 (513)
Q Consensus 214 ~~L~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~l~~~~ 285 (513)
+.++.... . .-.......++-+.+.. .-..+++.++..|+++++.||.+|+.+++.++.+ ++-. .-...-
T Consensus 354 ~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~-~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iq-k~~~e~ 431 (1075)
T KOG2171|consen 354 EAMLQSTEWKERHAALLALSVIAEGCSDVMIG-NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQ-KKHHER 431 (1075)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcccHHHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHH-HHHHHh
Confidence 22221000 0 00111111222222222 2345788889999999999999999999999875 3322 223344
Q ss_pred chHHHHhhhcC-CCcchhhhHHHHHHHhhhccc
Q 010291 286 GLELLLGLLGS-TNPKQQLDGAVALFKLANKAT 317 (513)
Q Consensus 286 ~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~ 317 (513)
.++.|+..+.+ .++.++..|+.++.+++....
T Consensus 432 l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~ 464 (1075)
T KOG2171|consen 432 LPPALIALLDSTQNVRVQAHAAAALVNFSEECD 464 (1075)
T ss_pred ccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc
Confidence 67788888887 778999999999999988765
No 62
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.79 E-value=8.1e-07 Score=86.76 Aligned_cols=146 Identities=16% Similarity=0.151 Sum_probs=123.6
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHH
Q 010291 56 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 135 (513)
Q Consensus 56 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 135 (513)
..+.+++..|+-++.+++..-...+.-+....+..++++++.+++..+...+..+++|+.......+..++..|+++.+.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 46778899999999888876555555555667999999999999999999999999999988888899999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHhhccccchhhH--hcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCc
Q 010291 136 EMLQSPDVQLREMSAFALGRLAQDMHNQAGIA--HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 201 (513)
Q Consensus 136 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 201 (513)
+.+.++++.++..+.|+|+++..+.+...+.. ..=....+..+..++++.+++.+...+.|+..+.
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999998776644332 2223344788889999999999999999997653
No 63
>PTZ00429 beta-adaptin; Provisional
Probab=98.78 E-value=8.7e-07 Score=91.82 Aligned_cols=287 Identities=14% Similarity=0.033 Sum_probs=178.9
Q ss_pred hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 84 (513)
Q Consensus 5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 84 (513)
+..+.+-++++||.+|-.|+++++.+-. ++..+. +++.+.+.|.+.++.||+.|+.++.++-..+++ .+.
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~ 176 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFY 176 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---ccc
Confidence 4455666677888888888888887764 232222 356677888899999999999999999865553 334
Q ss_pred hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccch
Q 010291 85 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA 164 (513)
Q Consensus 85 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 164 (513)
+.|.++.|..++.+.++.+..+|+.+|..+...++... -...+.+..++..+.+-++..+...+.+|.... +....
T Consensus 177 ~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l--~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~ 252 (746)
T PTZ00429 177 QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI--ESSNEWVNRLVYHLPECNEWGQLYILELLAAQR--PSDKE 252 (746)
T ss_pred ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh--HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcH
Confidence 56788899999999999999999999999986655321 223456777888888778888877777775432 22211
Q ss_pred hhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCc--chHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhh
Q 010291 165 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE--DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 242 (513)
Q Consensus 165 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (513)
.. ...+..+...+++.++.+...|+.++.++.... +....... ....+++.+..+....+-.+..++..+....
T Consensus 253 e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~- 328 (746)
T PTZ00429 253 SA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLSRRDAETQYIVCKNIHALLVIF- 328 (746)
T ss_pred HH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhhCCCccHHHHHHHHHHHHHHHC-
Confidence 11 245666788888999999999999999988642 22222211 1112222221111112212222222221111
Q ss_pred hhhHHHHHHHH---HHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291 243 GRVLNHLLYLM---RVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 315 (513)
Q Consensus 243 ~~~l~~Lv~lL---~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 315 (513)
..++..-+... .+....++...+.+|..++...+... .+..|.+...+.+.+++.++..++.+++.+
T Consensus 329 P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~------IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k 398 (746)
T PTZ00429 329 PNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPE------ILKELAEYASGVDMVFVVEVVRAIASLAIK 398 (746)
T ss_pred HHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHH------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Confidence 12222212211 11223467788888888775544332 235566666677778888888888888765
No 64
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.3e-06 Score=76.70 Aligned_cols=282 Identities=15% Similarity=0.152 Sum_probs=196.4
Q ss_pred hHHHHhhccCCHHHHHHHHHHHHHhhccCchhH----HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291 6 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENK----NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 81 (513)
Q Consensus 6 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~----~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 81 (513)
|.|-+-|..++..++.-++..++.+..+.+.+. ..+++.|+.+.++.++..++.++...|...+..++.. +..-.
T Consensus 85 pdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf-paale 163 (524)
T KOG4413|consen 85 PDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALE 163 (524)
T ss_pred HHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHH
Confidence 344444556788899999999999988655332 2345789999999999999999999999999999976 55567
Q ss_pred HHHhCCChHHH--HHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHhh
Q 010291 82 EVLAAGALQPV--IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ 158 (513)
Q Consensus 82 ~~~~~g~i~~L--~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~ 158 (513)
.+++......+ .++-...+.-.|......+..+.+.+++.....-.+|.+..|..-++. .|.-++.++......|+.
T Consensus 164 aiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae 243 (524)
T KOG4413|consen 164 AIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE 243 (524)
T ss_pred HhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH
Confidence 77776655544 333334455567777888888988888888888899999999888877 677888999999999999
Q ss_pred ccccchhhHhcCChHHHHHHhcCCC--HHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHH
Q 010291 159 DMHNQAGIAHNGGLVPLLKLLDSKN--GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKR 236 (513)
Q Consensus 159 ~~~~~~~~~~~~~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~ 236 (513)
....++.+.+.|.++.+..++...+ +--.-.++-..+.+-. .++.....+......
T Consensus 244 teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffg-keaimdvseeaicea--------------------- 301 (524)
T KOG4413|consen 244 TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFG-KEAIMDVSEEAICEA--------------------- 301 (524)
T ss_pred HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc-chHHhhcCHHHHHHH---------------------
Confidence 9999999999999999988886544 2222222222222211 111111000000000
Q ss_pred HHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCc--hHHHHhhh-cCCCcchhhhHHHHHHHhh
Q 010291 237 LEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGG--LELLLGLL-GSTNPKQQLDGAVALFKLA 313 (513)
Q Consensus 237 ~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~--i~~L~~ll-~~~~~~v~~~a~~~L~~l~ 313 (513)
-.-++...+......|++.++.|..+++.+-++.++...+.+.|- ...++.-. ..+...-+..+..+|.+++
T Consensus 302 -----liiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIa 376 (524)
T KOG4413|consen 302 -----LIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA 376 (524)
T ss_pred -----HHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence 011344556677788999999999999999998888877777664 23333322 3344455677788888877
Q ss_pred hc
Q 010291 314 NK 315 (513)
Q Consensus 314 ~~ 315 (513)
..
T Consensus 377 ge 378 (524)
T KOG4413|consen 377 GE 378 (524)
T ss_pred cc
Confidence 54
No 65
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.70 E-value=1.1e-06 Score=84.61 Aligned_cols=231 Identities=15% Similarity=0.083 Sum_probs=170.1
Q ss_pred CCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhC-----CChHHHHHhhcCCChHHHHHHHHHHHHhhcCC
Q 010291 45 NALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-----GALQPVIGLLSSCCSESQREAALLLGQFAATD 118 (513)
Q Consensus 45 g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 118 (513)
..+..++++|+ ..+.++.+..+..+..+..+.+.....+.+. .....++.+|..++.-+...++..|..+...+
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 45778888888 5678999999999999998877766666653 56788888999888899999999999998654
Q ss_pred chhhHHHHhcCChHHHHHHhCCC-CHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCC--CHHHHHHHHHHHH
Q 010291 119 SDCKVHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK--NGSLQHNAAFALY 195 (513)
Q Consensus 119 ~~~~~~~~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~ 195 (513)
+.........-..+.+...++.+ +...+..|+.+|.+|...++.|..+.+.++++.|+.+++.. +.+.+..++.++|
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW 212 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW 212 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 43222111112445666777654 46788889999999999999999999989999999999763 4578899999999
Q ss_pred hcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-hhcchhhhHHHHHhhccCC
Q 010291 196 GLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSP 274 (513)
Q Consensus 196 ~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~ 274 (513)
-|+.+++....+ ...++++.|+.+++. ....+-.-++.++.|+...
T Consensus 213 lLSF~~~~~~~~---------------------------------~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 213 LLTFNPHAAEVL---------------------------------KRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred HHhccHHHHHhh---------------------------------ccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 999987643322 235678888898887 5567777888899999764
Q ss_pred CC-------cceeeecCCchHHHHhhhcC--CCcchhhhHHHH
Q 010291 275 DD-------QRTIFIDGGGLELLLGLLGS--TNPKQQLDGAVA 308 (513)
Q Consensus 275 ~~-------~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~~ 308 (513)
+. ....+++.|..+.+..+... +++++.......
T Consensus 260 ~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L 302 (429)
T cd00256 260 RVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFL 302 (429)
T ss_pred ccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 31 22355565665555555543 777776554443
No 66
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=1.1e-05 Score=80.33 Aligned_cols=273 Identities=14% Similarity=0.099 Sum_probs=177.0
Q ss_pred ChhHHHHhh----ccCCH-HHHHHHHHHHHHhhcc-CchhHHHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHhhcC
Q 010291 4 GIPPLVELL----EFTDT-KVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHS 75 (513)
Q Consensus 4 ~i~~Lv~lL----~~~~~-~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~a~~~L~~l~~~ 75 (513)
..|.|+..| ..+.+ .++..++.+|+.+|.+ +++ ...-..+.++..++.-.+ .++..+|..|+.+|.+-...
T Consensus 126 ~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe-vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef 204 (859)
T KOG1241|consen 126 QWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE-VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEF 204 (859)
T ss_pred hCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH-HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHH
Confidence 344455544 33333 4889999999999985 233 111122345666776665 45789999999999887532
Q ss_pred ChhH-HHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHH
Q 010291 76 SPNI-KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG 154 (513)
Q Consensus 76 ~~~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~ 154 (513)
...+ ....-..-+++...+.-.+++.+++..|..+|..+.+-.-+....-+.......-+..++++++++...+...-+
T Consensus 205 ~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWs 284 (859)
T KOG1241|consen 205 TKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWS 284 (859)
T ss_pred HHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 2211 111112235566666777899999999999999998654444444445556666778888999999999999999
Q ss_pred HHhhcccc----chhhHhc---------------CChHHHHHHhcCC-------CHHHHHHHHHHHHhcccCcchHHHHH
Q 010291 155 RLAQDMHN----QAGIAHN---------------GGLVPLLKLLDSK-------NGSLQHNAAFALYGLADNEDNVADFI 208 (513)
Q Consensus 155 ~l~~~~~~----~~~~~~~---------------~~i~~L~~ll~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~~ 208 (513)
++|..+-+ -....+. +.+|.|+++|... +......|..+|.-++.
T Consensus 285 ticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~--------- 355 (859)
T KOG1241|consen 285 TICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ--------- 355 (859)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH---------
Confidence 88854322 0111111 2344455555431 12333333334433332
Q ss_pred hhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHH----HhhcchhhhHHHHHhhccCCCC-cceeeec
Q 010291 209 RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR----VAEKGVQRRVALALAHLCSPDD-QRTIFID 283 (513)
Q Consensus 209 ~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~----~~~~~v~~~a~~aL~~l~~~~~-~~~~l~~ 283 (513)
....+++++++.+.+ ++++.-+..|+.+++.+-.+++ .+..-..
T Consensus 356 -------------------------------~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV 404 (859)
T KOG1241|consen 356 -------------------------------CVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIV 404 (859)
T ss_pred -------------------------------HhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHH
Confidence 223334555555555 4788889999999999987765 4445556
Q ss_pred CCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291 284 GGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 317 (513)
Q Consensus 284 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 317 (513)
.+++|.++.++.+++--++..++|++++++....
T Consensus 405 ~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~ 438 (859)
T KOG1241|consen 405 IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP 438 (859)
T ss_pred hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch
Confidence 7899999999998888889999999999998754
No 67
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=2.2e-06 Score=82.22 Aligned_cols=314 Identities=13% Similarity=0.085 Sum_probs=200.0
Q ss_pred CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 81 (513)
Q Consensus 2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 81 (513)
++.+++++..+++.+..+|.-||..+.|++.. ........-..+...+.++..+.+..++..| ..|-.+..+-...++
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv-~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKV-AKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESA 160 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHHH-hccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccc
Confidence 56789999999999999999999999999973 2222222223445666677667777766544 444444322111111
Q ss_pred -HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcc
Q 010291 82 -EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 160 (513)
Q Consensus 82 -~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 160 (513)
.+--.+.+|.|-+-+..-++..|......|.-+-+. |.....-.-..+++.|...|.+++++++..+-.++.++-..-
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI 239 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI 239 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 111123445555555567889999999998888533 432222233567888999999999999988888887776433
Q ss_pred ccchhhHh-cCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhh----cCcccccchhh-hhhhhHHHHHHHH
Q 010291 161 HNQAGIAH-NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV----GGVQKLQDGEF-IVQATKDCVAKTL 234 (513)
Q Consensus 161 ~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----g~i~~L~~~~~-~~~~~~~~~~~~~ 234 (513)
.+.....+ ...++.++.-+.++++.++..|+.-+..+..-....--..-. ++++.+.+... +....+....+.+
T Consensus 240 ~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l 319 (675)
T KOG0212|consen 240 RSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLL 319 (675)
T ss_pred hcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHH
Confidence 33333222 345667888889999999999888777776533222222222 33333333222 1221122222111
Q ss_pred HHHH-------HHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHH
Q 010291 235 KRLE-------EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAV 307 (513)
Q Consensus 235 ~~~~-------~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 307 (513)
..+. ++.-..++.-+...+.+...+.|..++.-+..+-...+++-........+.|+.-+.++++++...+..
T Consensus 320 ~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~ 399 (675)
T KOG0212|consen 320 LKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALS 399 (675)
T ss_pred HHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHH
Confidence 1111 111123566677777778888999999988888777666666666777899999999999999999999
Q ss_pred HHHHhhhcccc
Q 010291 308 ALFKLANKATT 318 (513)
Q Consensus 308 ~L~~l~~~~~~ 318 (513)
.+.+++.....
T Consensus 400 lla~i~~s~~~ 410 (675)
T KOG0212|consen 400 LLASICSSSNS 410 (675)
T ss_pred HHHHHhcCccc
Confidence 99999876543
No 68
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.51 E-value=1.8e-06 Score=80.91 Aligned_cols=176 Identities=20% Similarity=0.208 Sum_probs=147.2
Q ss_pred hhHHHHHhcCCHHHHHHhhcCCCH--HHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhc-CCChHHHHHHHHHHH
Q 010291 36 ENKNQIVECNALPTLILMLRSEDS--AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLG 112 (513)
Q Consensus 36 ~~~~~i~~~g~i~~Lv~lL~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~ 112 (513)
..+..+...|++..|++++..++. .+|..|.+.|-.+.. .++++.+...| +..++.+-. ....+..+..+.+|.
T Consensus 171 ~LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~ 247 (832)
T KOG3678|consen 171 GLCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILE 247 (832)
T ss_pred hhhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHH
Confidence 345667788999999999998765 459999999999875 45678887776 555555544 345788999999999
Q ss_pred HhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc--cccchhhHhcCChHHHHHHhcCCCHHHHHHH
Q 010291 113 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD--MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNA 190 (513)
Q Consensus 113 ~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a 190 (513)
++..++++....++..|+++.++-..+..+|.+..+|+.+|.|++-+ ...++.+++..+..-|..+..+.|+-.+.+|
T Consensus 248 ~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~A 327 (832)
T KOG3678|consen 248 HMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHA 327 (832)
T ss_pred HHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHH
Confidence 99999899889999999999999999999999999999999999844 3568889998888889999988999999999
Q ss_pred HHHHHhcccCcchHHHHHhhcCcc
Q 010291 191 AFALYGLADNEDNVADFIRVGGVQ 214 (513)
Q Consensus 191 ~~~L~~l~~~~~~~~~~~~~g~i~ 214 (513)
+.+++.++.+.+..+++.+.|.+.
T Consensus 328 ClAV~vlat~KE~E~~VrkS~Tla 351 (832)
T KOG3678|consen 328 CLAVAVLATNKEVEREVRKSGTLA 351 (832)
T ss_pred HHHHhhhhhhhhhhHHHhhccchh
Confidence 999999999888877777777543
No 69
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=4.8e-06 Score=85.34 Aligned_cols=181 Identities=16% Similarity=0.165 Sum_probs=154.1
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcC-
Q 010291 20 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS- 98 (513)
Q Consensus 20 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~- 98 (513)
|.+|+..|+.+..-.+-....-...|+.|..+++|+++-.++|..-+.+-..+..-.+.++..+++.++-..+++.|..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~ 566 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS 566 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence 6778888888887667677777788999999999999999999988888888766658888888888888888888876
Q ss_pred C--ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC-CHHHHHHHHHHHHHHhhccccchhh-HhcCChHH
Q 010291 99 C--CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHNQAGI-AHNGGLVP 174 (513)
Q Consensus 99 ~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~i~~ 174 (513)
. +++-+..|+.+|..++.+.+-.+....+.+.+...+..+.++ .+-++..++-+|+.|-.+.+..+.. .+.++-..
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek 646 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK 646 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence 2 358899999999999998888888899999999999999985 7889999999999999877654443 45678889
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcccC
Q 010291 175 LLKLLDSKNGSLQHNAAFALYGLADN 200 (513)
Q Consensus 175 L~~ll~~~~~~~~~~a~~~L~~l~~~ 200 (513)
|..+|.++-++++.+|+.+|+.+-.+
T Consensus 647 L~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 647 LILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999998763
No 70
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.50 E-value=1.3e-05 Score=77.78 Aligned_cols=238 Identities=17% Similarity=0.056 Sum_probs=168.9
Q ss_pred ChhHHHHhhc-cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291 4 GIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 82 (513)
Q Consensus 4 ~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 82 (513)
+++.++..|. .+++.++..++.++..... + .++..++..|.+.++.++..++.+|+.+-. +
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--~----- 116 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG--R----- 116 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--h-----
Confidence 4677888884 5667777766666543321 1 138899999999999999999999987632 2
Q ss_pred HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc
Q 010291 83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 162 (513)
Q Consensus 83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 162 (513)
+..+.|+.++.+.++.++..++.++.... ....+.+..+++++++.++..|+.+|+.+..
T Consensus 117 ----~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~---- 176 (410)
T TIGR02270 117 ----QAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPR---- 176 (410)
T ss_pred ----HHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----
Confidence 35778899999999999988887776632 1235678899999999999999999998753
Q ss_pred chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHh----hcCcccccchhhhhhhhHHHHHHHHHHHH
Q 010291 163 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR----VGGVQKLQDGEFIVQATKDCVAKTLKRLE 238 (513)
Q Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~g~i~~L~~~~~~~~~~~~~~~~~~~~~~ 238 (513)
...++.|...+.+.++.++..|++++..+.. +.....+.. .|. +. .......+.
T Consensus 177 ------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~-~~--------------~~~l~~~la 234 (410)
T TIGR02270 177 ------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGG-PH--------------RQRLLVLLA 234 (410)
T ss_pred ------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCc-cH--------------HHHHHHHHH
Confidence 2456668888999999999999999988754 222221111 111 10 000001111
Q ss_pred HHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291 239 EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 315 (513)
Q Consensus 239 ~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 315 (513)
.......++.|..+++++. ++..++.+++.+- ....++.|+..+.+.. ++..|..++..+..-
T Consensus 235 l~~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg----------~p~av~~L~~~l~d~~--~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 235 VAGGPDAQAWLRELLQAAA--TRREALRAVGLVG----------DVEAAPWCLEAMREPP--WARLAGEAFSLITGM 297 (410)
T ss_pred hCCchhHHHHHHHHhcChh--hHHHHHHHHHHcC----------CcchHHHHHHHhcCcH--HHHHHHHHHHHhhCC
Confidence 1134467888888888755 8999999998663 3457888999887644 899999999988754
No 71
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.49 E-value=2.5e-06 Score=66.16 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=103.5
Q ss_pred cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHH
Q 010291 14 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 93 (513)
Q Consensus 14 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 93 (513)
..+.+.+++...-|.|++. +|.+...+.+..+++.++..|..+|..+.+.+++.|+|+|.+ +.+.+.+.+.++++.++
T Consensus 28 tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~~I~ea~g~plii 105 (173)
T KOG4646|consen 28 TTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAKFIREALGLPLII 105 (173)
T ss_pred hccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHHHHHHhcCCceEE
Confidence 3578889999999999997 899999999999999999999999999999999999999988 67788999999999999
Q ss_pred HhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHH
Q 010291 94 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 135 (513)
Q Consensus 94 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 135 (513)
..+.++.......++.++..|+.+.-..+..+....++..+.
T Consensus 106 ~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~ 147 (173)
T KOG4646|consen 106 FVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQ 147 (173)
T ss_pred eecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHH
Confidence 999999999999999999999866555555555444444333
No 72
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.45 E-value=1.5e-05 Score=74.20 Aligned_cols=229 Identities=18% Similarity=0.206 Sum_probs=160.5
Q ss_pred HHHhhcc-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291 8 LVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVL 84 (513)
Q Consensus 8 Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 84 (513)
|-..+++ .+++...-|+++|..+.. .++.|-.++...++..++..+. ..+-.++-..+.|+|.|+.+ +...+.+.
T Consensus 161 l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~~~ 238 (442)
T KOG2759|consen 161 LKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEKLK 238 (442)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHHHh
Confidence 3445554 567788889999999998 7899999999999999999884 34677899999999999977 55557777
Q ss_pred hCCChHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCc------hhhHHHHhcCChHHHHHHhCC---CCHHHHHHHHHHHH
Q 010291 85 AAGALQPVIGLLSSC-CSESQREAALLLGQFAATDS------DCKVHIVQRGAVRPLIEMLQS---PDVQLREMSAFALG 154 (513)
Q Consensus 85 ~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~------~~~~~~~~~~~i~~L~~~l~~---~~~~~~~~a~~~L~ 154 (513)
..+.++.|..++... ...|.+-++.++.|++...+ .....++..++.+. ++.|.. +|+++....-..-.
T Consensus 239 ~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~-l~~L~~rkysDEDL~~di~~L~e 317 (442)
T KOG2759|consen 239 RFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKT-LQSLEERKYSDEDLVDDIEFLTE 317 (442)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHH-HHHHHhcCCCcHHHHHHHHHHHH
Confidence 778999999999865 47788999999999997764 23344555555544 444443 36665543332222
Q ss_pred HHhhc----------------------cccc---------hhhHhc--CChHHHHHHhcCCC-HHHHHHHHHHHHhccc-
Q 010291 155 RLAQD----------------------MHNQ---------AGIAHN--GGLVPLLKLLDSKN-GSLQHNAAFALYGLAD- 199 (513)
Q Consensus 155 ~l~~~----------------------~~~~---------~~~~~~--~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~- 199 (513)
.|-.. +..+ ..+.+. ..+..|+++|..++ +.+...|+.-++...+
T Consensus 318 ~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~ 397 (442)
T KOG2759|consen 318 KLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRH 397 (442)
T ss_pred HHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHh
Confidence 22110 1111 111111 12566888887765 7777888888888887
Q ss_pred CcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhcc
Q 010291 200 NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC 272 (513)
Q Consensus 200 ~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~ 272 (513)
+|+.+..+.+. |+=..++.+|.++|++|+.+|+.|+..+.
T Consensus 398 yP~gk~vv~k~---------------------------------ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 398 YPEGKAVVEKY---------------------------------GGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred CchHhHHHHHh---------------------------------chHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 55555444443 35567889999999999999999987664
No 73
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=5.3e-06 Score=85.05 Aligned_cols=200 Identities=16% Similarity=0.155 Sum_probs=166.4
Q ss_pred CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC-C--CHHHHHHHHHHHHHhhcCChh
Q 010291 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-E--DSAIHYEAVGVIGNLVHSSPN 78 (513)
Q Consensus 2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~--~~~v~~~a~~~L~~l~~~~~~ 78 (513)
-|+.|-++.+|+++-.+++---+.+-.++..-++..+..+++.++-..+++.|.. + +++-|..|+.+|..++.+...
T Consensus 511 VGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~l 590 (1387)
T KOG1517|consen 511 VGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKL 590 (1387)
T ss_pred cchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccch
Confidence 3889999999999999998888888888876678889999999999999999985 2 468899999999999999888
Q ss_pred HHHHHHhCCChHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010291 79 IKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 157 (513)
Q Consensus 79 ~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 157 (513)
.++...+.+.+..-+..++++ .+=+++.++.+|+.|..+.++.+..-.+.++.+.|+.+|+++-++||..|+.+|+.+.
T Consensus 591 GQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl 670 (1387)
T KOG1517|consen 591 GQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFL 670 (1387)
T ss_pred hHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHh
Confidence 888888999999889999885 6778999999999999999999988889999999999999999999999999999998
Q ss_pred hcc----ccchhhH------------hcCCh----HHHHHHhcCCCHHHHHHHHHHHHhcccCc
Q 010291 158 QDM----HNQAGIA------------HNGGL----VPLLKLLDSKNGSLQHNAAFALYGLADNE 201 (513)
Q Consensus 158 ~~~----~~~~~~~------------~~~~i----~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 201 (513)
.+. +.+.... -+..+ ..++.+++.+.+-++.....+|..+....
T Consensus 671 ~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 671 SNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred cccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 752 2222111 11122 25677778888888888888888877643
No 74
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=4e-05 Score=76.66 Aligned_cols=215 Identities=19% Similarity=0.241 Sum_probs=163.5
Q ss_pred CHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcC--CChHHHHHHHHHHHHhhcCCc---
Q 010291 46 ALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDS--- 119 (513)
Q Consensus 46 ~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~--- 119 (513)
-|+.|+.-..+ .=.+-|+.|++.|-.+++ ..|..+. ..|++++++.|.. .|+++...++.++.++.+.++
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 36666665553 346679999999999984 4455544 4568888898876 478999999999999987653
Q ss_pred ---hhh----------HH-HHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc--chhhH-hcCChHHHHHHhcCC
Q 010291 120 ---DCK----------VH-IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN--QAGIA-HNGGLVPLLKLLDSK 182 (513)
Q Consensus 120 ---~~~----------~~-~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~-~~~~i~~L~~ll~~~ 182 (513)
..+ +. +-..+.+..++..+...|-.+|..++..+.++-...+. +..+. ..-+|..|+.+|.+.
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds 178 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS 178 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh
Confidence 111 12 23477889999999999999999999999999865543 44444 467899999999999
Q ss_pred CHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-h--h-c
Q 010291 183 NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-A--E-K 258 (513)
Q Consensus 183 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~-~--~-~ 258 (513)
...++..++..|..++++.....+++. =.+++..|+.++.. + + .
T Consensus 179 rE~IRNe~iLlL~eL~k~n~~IQKlVA--------------------------------FENaFerLfsIIeeEGg~dGg 226 (970)
T KOG0946|consen 179 REPIRNEAILLLSELVKDNSSIQKLVA--------------------------------FENAFERLFSIIEEEGGLDGG 226 (970)
T ss_pred hhhhchhHHHHHHHHHccCchHHHHHH--------------------------------HHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999987766555432 34567788888877 2 2 2
Q ss_pred chhhhHHHHHhhccCCC-CcceeeecCCchHHHHhhhcC
Q 010291 259 GVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLLGS 296 (513)
Q Consensus 259 ~v~~~a~~aL~~l~~~~-~~~~~l~~~~~i~~L~~ll~~ 296 (513)
-|...++..|.||-... .++..+.+.+.||.|..++..
T Consensus 227 IVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~ 265 (970)
T KOG0946|consen 227 IVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSV 265 (970)
T ss_pred chHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCc
Confidence 46777888888988754 488899999999999988864
No 75
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=3e-05 Score=72.43 Aligned_cols=259 Identities=17% Similarity=0.187 Sum_probs=185.8
Q ss_pred HHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-----h----hHHHHHHhCCChHHH
Q 010291 22 AAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-----P----NIKKEVLAAGALQPV 92 (513)
Q Consensus 22 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~-----~----~~~~~~~~~g~i~~L 92 (513)
..++-+.-++. -|+....+++.++++.|+++|.++|.++....+..|..++... . ..-+.+++.++++.|
T Consensus 103 d~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 103 DIIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 34555666665 7889999999999999999999999999999999999998321 1 234567778899999
Q ss_pred HHhhcCCCh------HHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC--CHHHHHHHHHHHHHHhhccc-cc
Q 010291 93 IGLLSSCCS------ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQDMH-NQ 163 (513)
Q Consensus 93 ~~ll~~~~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~~~-~~ 163 (513)
++-++.-+. +-.......+.|+....+.....+++.|.+.+|++.+... -..-..+|..+|.-+..++. ++
T Consensus 182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~ 261 (536)
T KOG2734|consen 182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR 261 (536)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence 998875333 4456677889999988898888889999999999866543 34556778888888886665 67
Q ss_pred hhhHhcCChHHHHHHhc----CC-----CHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHH
Q 010291 164 AGIAHNGGLVPLLKLLD----SK-----NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL 234 (513)
Q Consensus 164 ~~~~~~~~i~~L~~ll~----~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~ 234 (513)
..+....+++.+++-+. ++ ..+..++...+|+.+-..+.++..++...++.
T Consensus 262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlq-------------------- 321 (536)
T KOG2734|consen 262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQ-------------------- 321 (536)
T ss_pred hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHH--------------------
Confidence 77777888888776653 11 24566777788888888899988888665543
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCC---cceeeecCCchHHHHhhhc-CCCc---------ch
Q 010291 235 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD---QRTIFIDGGGLELLLGLLG-STNP---------KQ 301 (513)
Q Consensus 235 ~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~---~~~~l~~~~~i~~L~~ll~-~~~~---------~v 301 (513)
|..++.......+..++++|-+...+++ ++..+++.+|+..++.+.. .+.+ +.
T Consensus 322 --------------Lm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~ 387 (536)
T KOG2734|consen 322 --------------LMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEH 387 (536)
T ss_pred --------------HHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHH
Confidence 2233333344457788888888877655 5667788888877776554 2222 22
Q ss_pred hhhHHHHHHHhhhc
Q 010291 302 QLDGAVALFKLANK 315 (513)
Q Consensus 302 ~~~a~~~L~~l~~~ 315 (513)
-+..+..|+.+...
T Consensus 388 eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 388 EEHVCSILASLLRN 401 (536)
T ss_pred HHHHHHHHHHHHHh
Confidence 24455556665543
No 76
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=98.41 E-value=2.1e-06 Score=74.50 Aligned_cols=94 Identities=30% Similarity=0.463 Sum_probs=80.3
Q ss_pred EEEEecCeeehhhHHHHhhcCHHHHHhccCCCC-C-CCCCceecCCCCHHHHHHHHHHHhcCccccC--HHHHHHHHHHH
Q 010291 348 VTFLVEGRRFYAHRICLLASSDAFRAMFDGGYR-E-KDARDIEIPNIRWEVFELMMRFIYTGSVDVT--LDIAQDLLRAA 423 (513)
Q Consensus 348 v~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~-e-~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~--~~~~~~ll~~A 423 (513)
+.+.|||..|..++.-|.....||+.|+.+++. + ...+.|-++. +|.-|+.+|+||-.|++.++ ...+.+|+.-|
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDR-SpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA 85 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDR-SPKHFDTILNFMRDGDVDLPESEKELKELLREA 85 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecC-ChhHHHHHHHhhhcccccCccchHHHHHHHHHH
Confidence 557899999999999999999999999998764 2 2334566654 99999999999999988865 55688999999
Q ss_pred HHhcHHHHHHHHHHHHHhc
Q 010291 424 DQYLLEGLKRLCEYTIAQD 442 (513)
Q Consensus 424 ~~~~~~~l~~~c~~~l~~~ 442 (513)
.+|.+++|.+.|...+...
T Consensus 86 ~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 86 EFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHhhHHHHHHHHHHHhhhc
Confidence 9999999999999987665
No 77
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=7.4e-06 Score=78.24 Aligned_cols=188 Identities=13% Similarity=0.120 Sum_probs=148.2
Q ss_pred HHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCC
Q 010291 21 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC 100 (513)
Q Consensus 21 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 100 (513)
..++.+|..+++.-.-.|..+.+..+.+.|+++|.+++..+.-.+...++|+.....+.+..+.+.|++..|+.++.+.|
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 34566777777755567778888899999999999887777888889999999888889999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcCCchh-hHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc----chhhHhc---C-C
Q 010291 101 SESQREAALLLGQFAATDSDC-KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN----QAGIAHN---G-G 171 (513)
Q Consensus 101 ~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~---~-~ 171 (513)
..++.+..|.|+.+..++.+. +-.....-+++.++++.++++-.+++.+...|+|+..+..- +..+.+. . .
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 999999999999998766544 34667778899999999999999999999999999864322 2111111 1 2
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHH
Q 010291 172 LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFI 208 (513)
Q Consensus 172 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 208 (513)
...|++.+...++-.....+..|.+++...++...++
T Consensus 567 fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V 603 (743)
T COG5369 567 FKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIV 603 (743)
T ss_pred HHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHH
Confidence 3346677777777767777888888887666655544
No 78
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.38 E-value=2.9e-07 Score=91.53 Aligned_cols=67 Identities=28% Similarity=0.473 Sum_probs=55.7
Q ss_pred CCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCC--C----------CCCceecCCCCHHHHHHHHHHHhcCcc
Q 010291 343 ATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYRE--K----------DARDIEIPNIRWEVFELMMRFIYTGSV 409 (513)
Q Consensus 343 ~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e--~----------~~~~i~l~~~~~~~~~~~l~~~Y~~~~ 409 (513)
..+.||+|.||+..|++||.||++||+|||++|-...+. + ....|.+.++++..|+.+|+||||+..
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~ 634 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTL 634 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccc
Confidence 457799999999999999999999999999999653222 1 123566889999999999999999854
No 79
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=2.1e-05 Score=78.77 Aligned_cols=268 Identities=18% Similarity=0.165 Sum_probs=164.1
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCC
Q 010291 8 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 87 (513)
Q Consensus 8 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 87 (513)
+..-|++++.-++-.|+-+|++++. ++.... ..|.+.++|++.++.+|+.|+.|...+-...++..+.+
T Consensus 112 lknDL~s~nq~vVglAL~alg~i~s--~Emard-----lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f---- 180 (866)
T KOG1062|consen 112 LKNDLNSSNQYVVGLALCALGNICS--PEMARD-----LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF---- 180 (866)
T ss_pred HHhhccCCCeeehHHHHHHhhccCC--HHHhHH-----hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh----
Confidence 4455677888889999999999985 444333 46778889999999999999999999988877765443
Q ss_pred ChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC---------------CCCHHHHHHHHHH
Q 010291 88 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ---------------SPDVQLREMSAFA 152 (513)
Q Consensus 88 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~---------------~~~~~~~~~a~~~ 152 (513)
++....+|.+.+..|.-.+...+..+|..+++......+ .++.|+..|+ -+||-++...++.
T Consensus 181 -~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrl 257 (866)
T KOG1062|consen 181 -VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRL 257 (866)
T ss_pred -hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHH
Confidence 445555666666666666666666666555544333332 4455555543 1356666666666
Q ss_pred HHHHhhccccchhhHh------------------c---CChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhc
Q 010291 153 LGRLAQDMHNQAGIAH------------------N---GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVG 211 (513)
Q Consensus 153 L~~l~~~~~~~~~~~~------------------~---~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g 211 (513)
|+-|..++.+....+. . ..+..++.+ .++...+..|+.+|+.+-.++++....+...
T Consensus 258 LriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I--~~~~~LrvlainiLgkFL~n~d~NirYvaLn 335 (866)
T KOG1062|consen 258 LRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI--RSNSGLRVLAINILGKFLLNRDNNIRYVALN 335 (866)
T ss_pred HHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHhcCCccceeeeehh
Confidence 6666655444222111 0 011111111 2356777788888888777666555444433
Q ss_pred CcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHH
Q 010291 212 GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLL 291 (513)
Q Consensus 212 ~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~ 291 (513)
.+..++....+.- ..-=..++++|+++|..+|..|...+..|....+.+. .+..|+
T Consensus 336 ~L~r~V~~d~~av------------------qrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~------mv~eLl 391 (866)
T KOG1062|consen 336 MLLRVVQQDPTAV------------------QRHRSTILECLKDPDVSIKRRALELSYALVNESNVRV------MVKELL 391 (866)
T ss_pred hHHhhhcCCcHHH------------------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHH------HHHHHH
Confidence 3333322111100 0112346778888888888888887777765444332 346677
Q ss_pred hhhcCCCcchhhhHHHHHHHhhhc
Q 010291 292 GLLGSTNPKQQLDGAVALFKLANK 315 (513)
Q Consensus 292 ~ll~~~~~~v~~~a~~~L~~l~~~ 315 (513)
.+|.+.+++.+...+.-+..++..
T Consensus 392 ~fL~~~d~~~k~~~as~I~~laEk 415 (866)
T KOG1062|consen 392 EFLESSDEDFKADIASKIAELAEK 415 (866)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHh
Confidence 777777888887777777777654
No 80
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.33 E-value=1.4e-06 Score=75.57 Aligned_cols=98 Identities=22% Similarity=0.315 Sum_probs=73.8
Q ss_pred eeehhhHHHHhhcCHHHHHhccCCCCCCC---------CCceecCC-CCHHHHH-HHHHHHhcCccccC-----------
Q 010291 355 RRFYAHRICLLASSDAFRAMFDGGYREKD---------ARDIEIPN-IRWEVFE-LMMRFIYTGSVDVT----------- 412 (513)
Q Consensus 355 ~~~~~h~~il~~~s~~f~~~~~~~~~e~~---------~~~i~l~~-~~~~~~~-~~l~~~Y~~~~~~~----------- 412 (513)
..+.+|+.|.++||++||.++.....|.. ...|.+++ |=|..|. .+++++||+.++++
T Consensus 261 eeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigS 340 (401)
T KOG2838|consen 261 EEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGS 340 (401)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcchhhhhhhhhhheecccchhhcccCCccccc
Confidence 46899999999999999999965443322 23455554 4555554 78999999987631
Q ss_pred -----------------HHHHHHHHHHHHHhcHHHHHHHHHHHHHhcCChhhHHHHH
Q 010291 413 -----------------LDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMY 452 (513)
Q Consensus 413 -----------------~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~~ 452 (513)
...+.+++++|-+|.++.|.+.|+..+......++...++
T Consensus 341 LSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~acaadlsn~cL 397 (401)
T KOG2838|consen 341 LSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRKACAADLSNGCL 397 (401)
T ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc
Confidence 2456789999999999999999999998877777665544
No 81
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.32 E-value=7.3e-05 Score=72.53 Aligned_cols=122 Identities=18% Similarity=0.083 Sum_probs=94.7
Q ss_pred CCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhH
Q 010291 45 NALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 123 (513)
Q Consensus 45 g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 123 (513)
.+++.++..|. +++++++..++.++... +.+. ++..++..+.+.++.++..++.+|+.+- ++
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i~--~~---- 116 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ--EDAL---------DLRSVLAVLQAGPEGLCAGIQAALGWLG--GR---- 116 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc--CChH---------HHHHHHHHhcCCCHHHHHHHHHHHhcCC--ch----
Confidence 36888999995 67788888776665422 2121 3788999999999999999999998773 22
Q ss_pred HHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291 124 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 199 (513)
Q Consensus 124 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 199 (513)
+..+.|+.+++++++.++..++.++.... ....+.+..++++.++.++..|+.+|+.+..
T Consensus 117 -----~a~~~L~~~L~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 117 -----QAEPWLEPLLAASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPR 176 (410)
T ss_pred -----HHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Confidence 35778999999999999988887777621 1345678899999999999999999998875
No 82
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.30 E-value=1.4e-05 Score=62.13 Aligned_cols=104 Identities=24% Similarity=0.197 Sum_probs=95.1
Q ss_pred cCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHH
Q 010291 97 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL 176 (513)
Q Consensus 97 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~ 176 (513)
...+.+.++....-|.|.+ .+|.+...+.+..+++.++..+..++..+++.++..|+|+|.+..+.+.+.+.++++.++
T Consensus 27 ~tt~~eakeqv~ANLANFA-YDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii 105 (173)
T KOG4646|consen 27 TTTNIEAKEQVTANLANFA-YDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLII 105 (173)
T ss_pred HhccHHHHHHHHHHHHhhc-cCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEE
Confidence 3467788888888888987 668888999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHhcccCc
Q 010291 177 KLLDSKNGSLQHNAAFALYGLADNE 201 (513)
Q Consensus 177 ~ll~~~~~~~~~~a~~~L~~l~~~~ 201 (513)
..++++...+...++.++..|+...
T Consensus 106 ~~lssp~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 106 FVLSSPPEITVHSAALFLQLLEFGE 130 (173)
T ss_pred eecCCChHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999744
No 83
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=0.00011 Score=66.18 Aligned_cols=288 Identities=16% Similarity=0.177 Sum_probs=189.9
Q ss_pred CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHH--HHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 010291 3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT--LILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 80 (513)
Q Consensus 3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~--Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 80 (513)
|.++.++.++...+.++-..|...|..++. .+..-..+........ +.++-...+.-+|......+..+..-++...
T Consensus 128 eilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesa 206 (524)
T KOG4413|consen 128 EILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESA 206 (524)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHH
Confidence 566778888888889999999999999998 6777777777665544 3344445566778888888999988888887
Q ss_pred HHHHhCCChHHHHHhhcC-CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC--CHHHHHHHHHHH----
Q 010291 81 KEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFAL---- 153 (513)
Q Consensus 81 ~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L---- 153 (513)
......|.+..|..-+.. .|.-++..+......++.. ...++.+.+.|.++.+.+++... +|.-.-.+....
T Consensus 207 neckkSGLldlLeaElkGteDtLVianciElvteLaet-eHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkff 285 (524)
T KOG4413|consen 207 NECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET-EHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFF 285 (524)
T ss_pred hHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH-hhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHh
Confidence 778888988888877776 6777788888888888743 45577788899999999999753 443333233333
Q ss_pred HHHhhccccchhhHh--cCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHH
Q 010291 154 GRLAQDMHNQAGIAH--NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVA 231 (513)
Q Consensus 154 ~~l~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~ 231 (513)
++.+..+-.-+.+.+ --+++..++++...|+..+..|+.+++.+..+.+....+...|- |
T Consensus 286 gkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgp-p----------------- 347 (524)
T KOG4413|consen 286 GKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGP-P----------------- 347 (524)
T ss_pred cchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCC-h-----------------
Confidence 333222211122222 12355567788888999999999999999988777655554441 0
Q ss_pred HHHHHHHHHhhhhhHHHHHH-HHHHhhcchhhhHHHHHhhccCC---CCcce-----------ee-------ecCCchHH
Q 010291 232 KTLKRLEEKIHGRVLNHLLY-LMRVAEKGVQRRVALALAHLCSP---DDQRT-----------IF-------IDGGGLEL 289 (513)
Q Consensus 232 ~~~~~~~~~~~~~~l~~Lv~-lL~~~~~~v~~~a~~aL~~l~~~---~~~~~-----------~l-------~~~~~i~~ 289 (513)
...+++. ....+...-++.+..+|.+++.. +..+. .+ -+..-...
T Consensus 348 -------------aaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleL 414 (524)
T KOG4413|consen 348 -------------AAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLEL 414 (524)
T ss_pred -------------HHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHH
Confidence 1122222 22222333456666666666542 11110 00 01122445
Q ss_pred HHhhhcCCCcchhhhHHHHHHHhhhccccccccC
Q 010291 290 LLGLLGSTNPKQQLDGAVALFKLANKATTLSSVD 323 (513)
Q Consensus 290 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~i~ 323 (513)
+..+++.+.|+++..+...+..++..+|....+.
T Consensus 415 FlgilqQpfpEihcAalktfTAiaaqPWalkeif 448 (524)
T KOG4413|consen 415 FLGILQQPFPEIHCAALKTFTAIAAQPWALKEIF 448 (524)
T ss_pred HHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHh
Confidence 6667777899999999999999988877665443
No 84
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.25 E-value=0.00019 Score=71.01 Aligned_cols=285 Identities=20% Similarity=0.177 Sum_probs=171.5
Q ss_pred HHHHHHhhccCchhHHHHHhcCCHHHHHHhh----------cCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHH
Q 010291 24 AGALRTLAFKNDENKNQIVECNALPTLILML----------RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 93 (513)
Q Consensus 24 ~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL----------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 93 (513)
+.+|+-+++ ++.+...+....++..|..+- ...+..+...|++||+|+...++..|+.+.+.|+...++
T Consensus 2 L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 455666666 566666666666677766655 246789999999999999999999999999999999999
Q ss_pred HhhcCC-----ChHHHHHHHHHHHHhhcCCchhhHHHHhc-CChHHHHHHhC----C-------------CCHHHHHHHH
Q 010291 94 GLLSSC-----CSESQREAALLLGQFAATDSDCKVHIVQR-GAVRPLIEMLQ----S-------------PDVQLREMSA 150 (513)
Q Consensus 94 ~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~~l~----~-------------~~~~~~~~a~ 150 (513)
..+... +.++.....+.|.-++...+..+..+++. +++..+...+. . .+......++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999876 78888889999988887777777777654 67777766652 0 1345667888
Q ss_pred HHHHHHhhccccchhhHhcCChHHHHHHhcC---------CCHHHHHHHHHHHHhcccCcchHHHHHhhcC-cccccchh
Q 010291 151 FALGRLAQDMHNQAGIAHNGGLVPLLKLLDS---------KNGSLQHNAAFALYGLADNEDNVADFIRVGG-VQKLQDGE 220 (513)
Q Consensus 151 ~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~---------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~-i~~L~~~~ 220 (513)
.++.|+.........-...+.++.++.++.+ +......+++.+|.|+--. ....++.... -..+.
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~--~~~~l~~~~~~~~~~~--- 235 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLE--CLDSLLSPKFQQSSLF--- 235 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChH--HHhhhhcccCCccccc---
Confidence 9999998665554331223444444444321 1245677888888888321 1111111000 00000
Q ss_pred hhhhhhHHHHHHHHHHHHHH----h---hhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCC--cceeeecCCc-hHHH
Q 010291 221 FIVQATKDCVAKTLKRLEEK----I---HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFIDGGG-LELL 290 (513)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~----~---~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~--~~~~l~~~~~-i~~L 290 (513)
.......++..-++.++.. . -...+.+++.+|..-.... ..+-..+....-.+. .+..+-+.+. -..|
T Consensus 236 -~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~-~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rL 313 (446)
T PF10165_consen 236 -PEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA-REVRKYLRARLLPPDKDRKKPPEKGDTLRSRL 313 (446)
T ss_pred -CCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc-HHHHHHHHHHhCCChhhcccCCCCCcchHHHH
Confidence 0000011111111111111 1 1245666667666521111 222223332222222 2223323333 4789
Q ss_pred HhhhcCCCcchhhhHHHHHHHhhhcc
Q 010291 291 LGLLGSTNPKQQLDGAVALFKLANKA 316 (513)
Q Consensus 291 ~~ll~~~~~~v~~~a~~~L~~l~~~~ 316 (513)
++++.+..+.++..++..|..++...
T Consensus 314 lrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 314 LRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred HHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 99999988999999999999998653
No 85
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.19 E-value=2.9e-06 Score=53.01 Aligned_cols=41 Identities=39% Similarity=0.621 Sum_probs=38.3
Q ss_pred CchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 010291 34 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 74 (513)
Q Consensus 34 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~ 74 (513)
+++++..+++.|+++.|+++|+++++++++.|+++|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46889999999999999999999999999999999999973
No 86
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=5.3e-05 Score=76.03 Aligned_cols=291 Identities=16% Similarity=0.171 Sum_probs=178.0
Q ss_pred hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 84 (513)
Q Consensus 5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 84 (513)
..++.+.++++++.+|..|+.+..++-. .......+.|.++.|-.++.++++.|...|+.+|..+...+++.-....
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l 199 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLEL 199 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccc
Confidence 4677888889999999999888888765 4556677889999999999999999999999999999876543111111
Q ss_pred hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccch
Q 010291 85 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA 164 (513)
Q Consensus 85 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 164 (513)
....+..++..++..+..-+.....++.+-.-.++... ...++.+...+.+.++.+...+...+.++........
T Consensus 200 ~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea-----~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~ 274 (734)
T KOG1061|consen 200 NPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREA-----EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVN 274 (734)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhH-----HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHH
Confidence 11233444444444444444444444444432222111 1256678888888888888888888888876554433
Q ss_pred hhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCccccc---chhhhhhhhHHHHHHHHHHHHHHh
Q 010291 165 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQ---DGEFIVQATKDCVAKTLKRLEEKI 241 (513)
Q Consensus 165 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~---~~~~~~~~~~~~~~~~~~~~~~~~ 241 (513)
.......-++++.++.... .++..++.-+.-+-..... +.....-.-+. +..+.-.....| +..+.
T Consensus 275 ~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~---~~~~~~~~Ff~kynDPiYvK~eKlei-------l~~la 343 (734)
T KOG1061|consen 275 ELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE---ILKVEIKVFFCKYNDPIYVKLEKLEI-------LIELA 343 (734)
T ss_pred HHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH---HHHhHhHeeeeecCCchhhHHHHHHH-------HHHHh
Confidence 3333455566777777665 6655555544333221111 11111000000 000000001111 11222
Q ss_pred hhh----hHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291 242 HGR----VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 317 (513)
Q Consensus 242 ~~~----~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 317 (513)
+.. ++..+...-..-|.+.-..+.+++++++..-+.. .+.++.|+.++.....-+..++...+..+.++-+
T Consensus 344 ~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP 418 (734)
T KOG1061|consen 344 NDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYP 418 (734)
T ss_pred hHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCC
Confidence 222 3444444444467777889999999998754332 6789999999998777888888999999888755
Q ss_pred cc
Q 010291 318 TL 319 (513)
Q Consensus 318 ~~ 319 (513)
+.
T Consensus 419 ~~ 420 (734)
T KOG1061|consen 419 NK 420 (734)
T ss_pred Cc
Confidence 43
No 87
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.00024 Score=63.63 Aligned_cols=205 Identities=17% Similarity=0.155 Sum_probs=134.8
Q ss_pred ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 83 (513)
Q Consensus 4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 83 (513)
.++.+.++++...+ -..|+.+|.|++. ++..+..+... .++.++..+.++...+-...+..|.|++++........
T Consensus 45 ~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll 120 (353)
T KOG2973|consen 45 LLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALL 120 (353)
T ss_pred hHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHH
Confidence 35667777776665 5678899999998 67888888777 77888888887767788888999999999866654443
Q ss_pred Hh------CCChHHHHHhhcCCCh--HHHHHHHHHHHHhhcCCchhhHHHHhcCCh--HHHHHHhCCCCHHHH-HHHHHH
Q 010291 84 LA------AGALQPVIGLLSSCCS--ESQREAALLLGQFAATDSDCKVHIVQRGAV--RPLIEMLQSPDVQLR-EMSAFA 152 (513)
Q Consensus 84 ~~------~g~i~~L~~ll~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i--~~L~~~l~~~~~~~~-~~a~~~ 152 (513)
.. .|.+.....+.+.+.. .--.+.+.++.|+++. +..|..+.+...+ +.+.. +.+.+..+| ...+.+
T Consensus 121 ~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~-~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~Gvagt 198 (353)
T KOG2973|consen 121 TNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQF-EAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGT 198 (353)
T ss_pred HhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhh-hhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHH
Confidence 32 2333333333333221 2335567788999744 5556666654432 22333 334555555 678899
Q ss_pred HHHHhhccccchhhHhcC--ChHH-HH--------------------HHhc-----CCCHHHHHHHHHHHHhcccCcchH
Q 010291 153 LGRLAQDMHNQAGIAHNG--GLVP-LL--------------------KLLD-----SKNGSLQHNAAFALYGLADNEDNV 204 (513)
Q Consensus 153 L~~l~~~~~~~~~~~~~~--~i~~-L~--------------------~ll~-----~~~~~~~~~a~~~L~~l~~~~~~~ 204 (513)
|.|+|.+...+..+.+.+ .++. |. +++. .+++.++...+.+|..||.....+
T Consensus 199 lkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GR 278 (353)
T KOG2973|consen 199 LKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGR 278 (353)
T ss_pred HHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhH
Confidence 999998888777666522 1221 11 2221 346788889999999999888887
Q ss_pred HHHHhhcCcc
Q 010291 205 ADFIRVGGVQ 214 (513)
Q Consensus 205 ~~~~~~g~i~ 214 (513)
..+...|+-+
T Consensus 279 e~lR~kgvYp 288 (353)
T KOG2973|consen 279 EVLRSKGVYP 288 (353)
T ss_pred HHHHhcCchH
Confidence 7777666443
No 88
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.14 E-value=0.0007 Score=65.05 Aligned_cols=251 Identities=20% Similarity=0.125 Sum_probs=169.2
Q ss_pred HHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCC--ChHHH
Q 010291 27 LRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQ 104 (513)
Q Consensus 27 L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~ 104 (513)
|..+.+.++..+..+.-....+.+..++-+++.++|..+.++++.+..+ +..-+.+.+.++--.++.-|..+ ...-|
T Consensus 7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER 85 (371)
T PF14664_consen 7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVER 85 (371)
T ss_pred HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHH
Confidence 3344444555555554444555555555555699999999999999987 45557777778777777777654 34456
Q ss_pred HHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCH
Q 010291 105 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNG 184 (513)
Q Consensus 105 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 184 (513)
++|...++.+....... . -...|++..++.+..+++...+..|..+|+.++..+ -..+..+||+..|++.+.++..
T Consensus 86 ~QALkliR~~l~~~~~~-~-~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~ 161 (371)
T PF14664_consen 86 EQALKLIRAFLEIKKGP-K-EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSF 161 (371)
T ss_pred HHHHHHHHHHHHhcCCc-c-cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccH
Confidence 78888888887552221 1 235578899999999999999999999999998633 3456788999999999888776
Q ss_pred HHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-------hh
Q 010291 185 SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-------AE 257 (513)
Q Consensus 185 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~-------~~ 257 (513)
++....+.++..+-.++..+..+...-- ++.++.-..+ ++
T Consensus 162 ~~~~~l~~~lL~lLd~p~tR~yl~~~~d---------------------------------L~~l~apftd~~~~~~~~~ 208 (371)
T PF14664_consen 162 SISESLLDTLLYLLDSPRTRKYLRPGFD---------------------------------LESLLAPFTDFHYRKIKDD 208 (371)
T ss_pred hHHHHHHHHHHHHhCCcchhhhhcCCcc---------------------------------HHHHHHhhhhhhccccccc
Confidence 7888888999999888776554432110 1111111111 11
Q ss_pred c--chhhhHHHHHhhccCCCCcceeeec--CCchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291 258 K--GVQRRVALALAHLCSPDDQRTIFID--GGGLELLLGLLGSTNPKQQLDGAVALFKLANK 315 (513)
Q Consensus 258 ~--~v~~~a~~aL~~l~~~~~~~~~l~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 315 (513)
. +--..+..++..+-++=++--.+.. ..++..|+..+..+++++|......+..+..-
T Consensus 209 ~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 209 RELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred hHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 1 2233444555555443332222222 25899999999999999999999999888763
No 89
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.14 E-value=2.5e-05 Score=77.51 Aligned_cols=257 Identities=15% Similarity=0.110 Sum_probs=167.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH--HHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHH
Q 010291 48 PTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI--KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 125 (513)
Q Consensus 48 ~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 125 (513)
..++..|++..+.+|+.|+..++.++.--..+ -+.+...|+ .|.+.|...++++.-..+.++..++..-.-.+..-
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~p 879 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTP 879 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCC
Confidence 34445667888999999999999987432221 122333343 36778888889888777776666653211100100
Q ss_pred HhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc----chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCc
Q 010291 126 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN----QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 201 (513)
Q Consensus 126 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 201 (513)
=-.+++|.|..+|++.+.+++++++..++.++...+. |+.+ ...-.|+++|.+.+..++++|...++.++.--
T Consensus 880 Pi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkahkK~iRRaa~nTfG~IakaI 956 (1172)
T KOG0213|consen 880 PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAHKKEIRRAAVNTFGYIAKAI 956 (1172)
T ss_pred ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence 1247899999999999999999999999999976654 3333 23445888999889999999999999998622
Q ss_pred chHHHHHhhcCcccccc-hhhhhhhhHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCC--CCc
Q 010291 202 DNVADFIRVGGVQKLQD-GEFIVQATKDCVAKTLKRLEEK-IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQ 277 (513)
Q Consensus 202 ~~~~~~~~~g~i~~L~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~ 277 (513)
..+.. +..|.+ +.....-...|..-++....+. .--.++|.|+.=-+.++..||...+.+++.+-.. .-.
T Consensus 957 GPqdV------LatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigems 1030 (1172)
T KOG0213|consen 957 GPQDV------LATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMS 1030 (1172)
T ss_pred CHHHH------HHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHh
Confidence 22111 112222 1222222234444343333221 2234677777766778999999999999988642 233
Q ss_pred ceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291 278 RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 317 (513)
Q Consensus 278 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 317 (513)
+..+. -..|.|...|.+.++.-|..|+.++.+++-+..
T Consensus 1031 kdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen 1031 KDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred hhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC
Confidence 44432 256788888888888889999999999886643
No 90
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.00047 Score=69.51 Aligned_cols=257 Identities=17% Similarity=0.220 Sum_probs=156.0
Q ss_pred ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 83 (513)
Q Consensus 4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 83 (513)
..|.+.++|++.++.+|..|+-+...+-+..|+..+.+ ++..-.+|.+.+..|...++..+..+|..+++.-..+
T Consensus 143 lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~f 217 (866)
T KOG1062|consen 143 LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYF 217 (866)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHH
Confidence 34677788999999999999999999998777766654 5677788888888888888888999988777655444
Q ss_pred HhCCChHHHHHhhcC---------------CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHH-------------
Q 010291 84 LAAGALQPVIGLLSS---------------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI------------- 135 (513)
Q Consensus 84 ~~~g~i~~L~~ll~~---------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~------------- 135 (513)
.+ .++.++..|+. ++|-++...++.|+-+..+++...+.+.+ ++..+.
T Consensus 218 r~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D--iLaqvatntdsskN~GnAI 293 (866)
T KOG1062|consen 218 RD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND--ILAQVATNTDSSKNAGNAI 293 (866)
T ss_pred HH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH--HHHHHHhcccccccchhHH
Confidence 44 55556555541 46778888888888888777765554432 111111
Q ss_pred ------HHhC-CCCHHHHHHHHHHHHHHhhccccchhhHh-----------cCChH----HHHHHhcCCCHHHHHHHHHH
Q 010291 136 ------EMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIAH-----------NGGLV----PLLKLLDSKNGSLQHNAAFA 193 (513)
Q Consensus 136 ------~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-----------~~~i~----~L~~ll~~~~~~~~~~a~~~ 193 (513)
.++. .++..++..|+.+|+....+.++..+.+. ..+++ .++++|+++|..+++.|+..
T Consensus 294 LYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralEL 373 (866)
T KOG1062|consen 294 LYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALEL 373 (866)
T ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 1111 13445666666666666554443221111 01111 24555555566666666555
Q ss_pred HHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccC
Q 010291 194 LYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 273 (513)
Q Consensus 194 L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 273 (513)
+..|.... |.. ..+..|+.+|.+.+++.+...+.-+..++.
T Consensus 374 s~~lvn~~-Nv~--------------------------------------~mv~eLl~fL~~~d~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 374 SYALVNES-NVR--------------------------------------VMVKELLEFLESSDEDFKADIASKIAELAE 414 (866)
T ss_pred HHHHhccc-cHH--------------------------------------HHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 55554322 222 245678888888888888888888877764
Q ss_pred C--CCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhh
Q 010291 274 P--DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 314 (513)
Q Consensus 274 ~--~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 314 (513)
. |+.+ . .|+.+.+.+...-.-++..+...+..+..
T Consensus 415 kfaP~k~-W-----~idtml~Vl~~aG~~V~~dv~~nll~LIa 451 (866)
T KOG1062|consen 415 KFAPDKR-W-----HIDTMLKVLKTAGDFVNDDVVNNLLRLIA 451 (866)
T ss_pred hcCCcch-h-----HHHHHHHHHHhcccccchhhHHHHHHHHh
Confidence 2 2221 1 23444444444334444444444444433
No 91
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.13 E-value=0.00021 Score=69.11 Aligned_cols=296 Identities=11% Similarity=0.028 Sum_probs=180.5
Q ss_pred HHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHH----HHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291 9 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL----ILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEV 83 (513)
Q Consensus 9 v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L----v~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~ 83 (513)
.+.|+++.|+....|+..++.++.-. .-.+..|-| +....+ +...++..++.++++.|..... ...+
T Consensus 100 l~aL~s~epr~~~~Aaql~aaIA~~E-------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P-e~li 171 (858)
T COG5215 100 LRALKSPEPRFCTMAAQLLAAIARME-------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP-EDLI 171 (858)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhh-------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH-HHHH
Confidence 45677788888888888888887621 112334444 443343 4567888999999999975333 2223
Q ss_pred HhCC-ChHHHHHh-hcC-CChHHHHHHHHHHHHhh-c-----CCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHH
Q 010291 84 LAAG-ALQPVIGL-LSS-CCSESQREAALLLGQFA-A-----TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG 154 (513)
Q Consensus 84 ~~~g-~i~~L~~l-l~~-~~~~~~~~a~~~L~~l~-~-----~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~ 154 (513)
...+ ++..++.- ++. .+..+|..++.+|.+-+ . ..++.+.. ++...+..-+.++.+++..+..+|.
T Consensus 172 ~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy-----~mqvvceatq~~d~e~q~aafgCl~ 246 (858)
T COG5215 172 QMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNY-----FMQVVCEATQGNDEELQHAAFGCLN 246 (858)
T ss_pred HHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhch-----hheeeehhccCCcHHHHHHHHHHHH
Confidence 2232 33444443 333 35678888888888732 1 11222222 3556677778899999999999999
Q ss_pred HHhhcccc-chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcc-hHHHHHh----------------hcCcccc
Q 010291 155 RLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED-NVADFIR----------------VGGVQKL 216 (513)
Q Consensus 155 ~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~----------------~g~i~~L 216 (513)
.+..-... -+...+........+.+.+.++++...+......+|..+- ...+... ..++|.|
T Consensus 247 kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~l 326 (858)
T COG5215 247 KIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPEL 326 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHH
Confidence 88743222 2223333333335566788899999999988888876321 1111111 1233333
Q ss_pred cchhhh--------hhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH----hhcchhhhHHHHHhhccCCCC-cceeeec
Q 010291 217 QDGEFI--------VQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV----AEKGVQRRVALALAHLCSPDD-QRTIFID 283 (513)
Q Consensus 217 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~----~~~~v~~~a~~aL~~l~~~~~-~~~~l~~ 283 (513)
+++... .......+..++..+..+....++.+.+.+... +++.-++.|+.+++.+-.++. .+..-+-
T Consensus 327 L~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V 406 (858)
T COG5215 327 LSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV 406 (858)
T ss_pred HHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH
Confidence 332211 011112222344555555555666666666655 567778999999999987765 2222233
Q ss_pred CCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291 284 GGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 317 (513)
Q Consensus 284 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 317 (513)
...+|.+...+.++.--++..++|+++.++.+..
T Consensus 407 ~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va 440 (858)
T COG5215 407 PQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA 440 (858)
T ss_pred HhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH
Confidence 5678999999998888889999999999987643
No 92
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.11 E-value=6.3e-06 Score=51.45 Aligned_cols=40 Identities=43% Similarity=0.612 Sum_probs=37.6
Q ss_pred ChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhh
Q 010291 76 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 115 (513)
Q Consensus 76 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 115 (513)
++++++.+++.|+++.|+.+|.+.+.++++.|+|+|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3677899999999999999999999999999999999997
No 93
>PF05536 Neurochondrin: Neurochondrin
Probab=98.10 E-value=0.00033 Score=70.96 Aligned_cols=239 Identities=15% Similarity=0.100 Sum_probs=160.8
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH---HHHHHhCCChHHHHHhhcC-------CChHHHHHHHHHHHHhh
Q 010291 46 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI---KKEVLAAGALQPVIGLLSS-------CCSESQREAALLLGQFA 115 (513)
Q Consensus 46 ~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~g~i~~L~~ll~~-------~~~~~~~~a~~~L~~l~ 115 (513)
.++..+.+|+..+.+-|-.++-.+.++..+.+.. ++.+.+.=+.+.+-++|.+ +....+.-|+.+|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 3667788999888777888888999998766533 3457777778999999987 23466777888999998
Q ss_pred cCCchhhHHHHhcCChHHHHHHhCCCCH-HHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHH
Q 010291 116 ATDSDCKVHIVQRGAVRPLIEMLQSPDV-QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 194 (513)
Q Consensus 116 ~~~~~~~~~~~~~~~i~~L~~~l~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L 194 (513)
. +|+....----+.+|.|+.++.+.+. .+...|..+|..++..++++..+.+.|+++.|.+.+.+ .+...+.|+.++
T Consensus 86 ~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 86 R-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred C-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 6 34432211112479999999988766 99999999999999999999999999999999999887 556678888888
Q ss_pred HhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCC
Q 010291 195 YGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 274 (513)
Q Consensus 195 ~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~ 274 (513)
.+++...... ...+.. . .-..+++.+-..........+..++..|..+-..
T Consensus 164 ~~Lls~~~~~-~~~~~~-----------------------~-----~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 164 LNLLSRLGQK-SWAEDS-----------------------Q-----LLHSILPSLARDFSSFHGEDKFELLEFLSAFLPR 214 (543)
T ss_pred HHHHHhcchh-hhhhhH-----------------------H-----HHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence 8887633211 000000 0 0012334444555555556677788888887554
Q ss_pred CCc--ceeeecCCch----HHHHhhhcC-CCcchhhhHHHHHHHhhhc
Q 010291 275 DDQ--RTIFIDGGGL----ELLLGLLGS-TNPKQQLDGAVALFKLANK 315 (513)
Q Consensus 275 ~~~--~~~l~~~~~i----~~L~~ll~~-~~~~v~~~a~~~L~~l~~~ 315 (513)
.+. .......+.. .-+..++++ ..+.-|..+..+...+...
T Consensus 215 ~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 215 SPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred CCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 321 2222333343 445566666 3445555665555555544
No 94
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.10 E-value=0.00033 Score=67.47 Aligned_cols=155 Identities=32% Similarity=0.424 Sum_probs=118.7
Q ss_pred ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 83 (513)
Q Consensus 4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 83 (513)
.++.+++.+.++++.++..|...++.+.. ...++.+..++.+.++.+|..|+.+|+.+-. +.
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--~~----- 105 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD--PE----- 105 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--hh-----
Confidence 46778888888889999999988776654 2468999999999999999999998888742 22
Q ss_pred HhCCChHHHHHhhc-CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCH------------HHHHHHH
Q 010291 84 LAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV------------QLREMSA 150 (513)
Q Consensus 84 ~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~------------~~~~~a~ 150 (513)
.++.++.++. +.+..++..++++|..+-.. ..+..++..++++.. .++..+.
T Consensus 106 ----a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 106 ----AVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred ----HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 5788899888 58899999999999999522 236778888877652 2344444
Q ss_pred HHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCc
Q 010291 151 FALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 201 (513)
Q Consensus 151 ~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 201 (513)
..|..+ .+...++.+...+.+.+..++..+..+|..+....
T Consensus 171 ~~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 171 EALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred HHHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence 444443 23345778899999999999999999999887654
No 95
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00025 Score=71.00 Aligned_cols=287 Identities=21% Similarity=0.220 Sum_probs=168.8
Q ss_pred CCChhHHHHhhcc-------CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 010291 2 EGGIPPLVELLEF-------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 74 (513)
Q Consensus 2 ~g~i~~Lv~lL~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~ 74 (513)
.+.+|.|+++|.. +++..-..|..+|.-++.. ....|+. -+++.+-+-+++++..-|+.|+.+++.+-.
T Consensus 318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~ 393 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---VGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILE 393 (859)
T ss_pred hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH---hcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhc
Confidence 3578889998843 2345666777777766652 1112222 233333345557888999999999999998
Q ss_pred CChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH-HHhcCChHHHHHHhCCCCHHHHHHHHHHH
Q 010291 75 SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH-IVQRGAVRPLIEMLQSPDVQLREMSAFAL 153 (513)
Q Consensus 75 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~i~~L~~~l~~~~~~~~~~a~~~L 153 (513)
+.+..+..-...++++.++.++.++.-.++..++|+|+.++...++.... ....+.++.++.-|. +.|.+..+++|++
T Consensus 394 gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf 472 (859)
T KOG1241|consen 394 GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAF 472 (859)
T ss_pred CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHH
Confidence 87777777777899999999999888889999999999999776654321 122333444444443 4678999999999
Q ss_pred HHHhhcccc--ch----hhHh---cCChHHHHHHhcCC---CHHHHHHHHHHHHhcccCc-chHHHHHhhcCcccccchh
Q 010291 154 GRLAQDMHN--QA----GIAH---NGGLVPLLKLLDSK---NGSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGE 220 (513)
Q Consensus 154 ~~l~~~~~~--~~----~~~~---~~~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~i~~L~~~~ 220 (513)
.+|+..... .. .... ...+..|++..... ....+..|-.+|..+..+. +....++. +
T Consensus 473 ~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~-~--------- 542 (859)
T KOG1241|consen 473 ISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ-K--------- 542 (859)
T ss_pred HHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH-H---------
Confidence 999943211 11 1221 11233333333332 3567888888999887633 33222211 0
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHH-HhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcC-CC
Q 010291 221 FIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-VAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS-TN 298 (513)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~-~~ 298 (513)
...-...++....+. ..+.+-. ..-.++|...|.+|..+.+.-..+..-.....+..+++++.+ .+
T Consensus 543 --------~~l~il~kl~q~i~~----~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s 610 (859)
T KOG1241|consen 543 --------LTLVILEKLDQTISS----QILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRS 610 (859)
T ss_pred --------HHHHHHHHHHHHHHH----HhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCcc
Confidence 000111112111110 1111111 122456677777777775432212222233456778888887 55
Q ss_pred cchhhhHHHHHHHhhhc
Q 010291 299 PKQQLDGAVALFKLANK 315 (513)
Q Consensus 299 ~~v~~~a~~~L~~l~~~ 315 (513)
.-+.+.|..++..++.+
T Consensus 611 ~~v~e~a~laV~tl~~~ 627 (859)
T KOG1241|consen 611 AVVHEEAFLAVSTLAES 627 (859)
T ss_pred ccchHHHHHHHHHHHHH
Confidence 56677777776666543
No 96
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00061 Score=67.86 Aligned_cols=192 Identities=20% Similarity=0.288 Sum_probs=108.2
Q ss_pred hHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH----
Q 010291 6 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK---- 81 (513)
Q Consensus 6 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~---- 81 (513)
+.++.+|++.-|-+|..|...+..+.-.-|+ .+.. .+|.|++-|.++++.|+..|+..++.|+..+|.+.-
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe---Alr~--~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP 221 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPE---ALRP--CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAP 221 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhH---hHhh--hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccH
Confidence 4455666666666666666666655542222 2222 256666666666666666666666666665554321
Q ss_pred ----HHHh-------------------------CCChHHHHHhhcCCC-hHHHHHHHHHHH--HhhcCCchhhHHHHhcC
Q 010291 82 ----EVLA-------------------------AGALQPVIGLLSSCC-SESQREAALLLG--QFAATDSDCKVHIVQRG 129 (513)
Q Consensus 82 ----~~~~-------------------------~g~i~~L~~ll~~~~-~~~~~~a~~~L~--~l~~~~~~~~~~~~~~~ 129 (513)
.+.. .-.+++|.+++++.. ..+.+.+..++. ++..+.+.+...+ .-
T Consensus 222 ~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qL 299 (877)
T KOG1059|consen 222 LFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QL 299 (877)
T ss_pred HHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HH
Confidence 1111 112444555554422 344444444432 2333322221111 12
Q ss_pred ChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHh
Q 010291 130 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR 209 (513)
Q Consensus 130 ~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 209 (513)
++..|--++.+.|+.+++.++-+++.+...++.- + ..--+.++++|.+.|+.++..|+..+..+.. .+|..++++
T Consensus 300 CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~---V-qa~kdlIlrcL~DkD~SIRlrALdLl~gmVs-kkNl~eIVk 374 (877)
T KOG1059|consen 300 CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA---V-QAHKDLILRCLDDKDESIRLRALDLLYGMVS-KKNLMEIVK 374 (877)
T ss_pred HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH---H-HHhHHHHHHHhccCCchhHHHHHHHHHHHhh-hhhHHHHHH
Confidence 4556666777888889988888888887533221 1 1223467899999999999999999988874 445555543
No 97
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.08 E-value=2.3e-05 Score=76.11 Aligned_cols=262 Identities=15% Similarity=0.127 Sum_probs=167.7
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH--HHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhH
Q 010291 46 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI--KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 123 (513)
Q Consensus 46 ~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 123 (513)
++..++.+|++..+++|..|+...+.|+.--..+ -+.+...|. .|.+-+...++++.-..+.+++.+.+...-...
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 3556677888999999999999888886321111 123333333 356667778888887777777776532111000
Q ss_pred HHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHh-cCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcc
Q 010291 124 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAH-NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED 202 (513)
Q Consensus 124 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 202 (513)
+-=-.|++|.|..+|++.+.+++.+....++.+|...+...-..+ ....-.|+.+|.+-+.+++++|...++.+++--.
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiG 762 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIG 762 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcC
Confidence 011247899999999999999999999999999977665221111 1233458888999999999999999999886222
Q ss_pred hHHHHHhhcCcccccc-hhhhhhhhHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCC--CCcc
Q 010291 203 NVADFIRVGGVQKLQD-GEFIVQATKDCVAKTLKRLEEK-IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQR 278 (513)
Q Consensus 203 ~~~~~~~~g~i~~L~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~ 278 (513)
.+..+ ..|.+ +.....-...|.+-++....+. .--.++|.|+.=-.+++..||...+.+++.+-.. ...+
T Consensus 763 PqdvL------~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~ 836 (975)
T COG5181 763 PQDVL------DILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASL 836 (975)
T ss_pred HHHHH------HHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHH
Confidence 21111 11222 1122222334444333333221 2234677776666668889999999999887542 2223
Q ss_pred eeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291 279 TIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 317 (513)
Q Consensus 279 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 317 (513)
..+. ...|.|...+.+.++.-|..|...+.+++-++.
T Consensus 837 dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 837 DYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred HHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 3321 245777788888888889999999999887644
No 98
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.05 E-value=0.00017 Score=71.44 Aligned_cols=246 Identities=19% Similarity=0.151 Sum_probs=171.0
Q ss_pred cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCC-----CHHHHHHHHHHHHHhhcCChhHHHHHHhC-C
Q 010291 14 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-----DSAIHYEAVGVIGNLVHSSPNIKKEVLAA-G 87 (513)
Q Consensus 14 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g 87 (513)
.+++.+..+|+++|.|+...++..|..+.+.|..+.++..|+.. +.++.-...++|.-++......+..+++. +
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 45789999999999999999999999999999999999999954 78999999999999998878887777655 7
Q ss_pred ChHHHHHhhcC-----------------CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC-------C--C
Q 010291 88 ALQPVIGLLSS-----------------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-------S--P 141 (513)
Q Consensus 88 ~i~~L~~ll~~-----------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~-------~--~ 141 (513)
++..+...+.. .+......++.++.|++...+.... -...+.++.++.++. . +
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~ 201 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPP 201 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCc
Confidence 88888776641 1334567788899999865554332 011223333333321 1 2
Q ss_pred CHHHHHHHHHHHHHHhhccccc--------hh----hHhcCChHHHHHHhcC----C----CHHHHHHHHHHHHhcccCc
Q 010291 142 DVQLREMSAFALGRLAQDMHNQ--------AG----IAHNGGLVPLLKLLDS----K----NGSLQHNAAFALYGLADNE 201 (513)
Q Consensus 142 ~~~~~~~a~~~L~~l~~~~~~~--------~~----~~~~~~i~~L~~ll~~----~----~~~~~~~a~~~L~~l~~~~ 201 (513)
......+++.+|.|+-...... .. ......+..|+.+|.. . -.......+.+|.+++...
T Consensus 202 l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~ 281 (446)
T PF10165_consen 202 LDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA 281 (446)
T ss_pred chhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc
Confidence 3456788888888884211111 00 1112234556666531 1 1356678888999999877
Q ss_pred chHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCC
Q 010291 202 DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 276 (513)
Q Consensus 202 ~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~ 276 (513)
...+..++...+|++.+...... ....+-..|+.++.++.+.++..++..|..||..+.
T Consensus 282 ~~~Rk~lr~~lLP~~~Dr~~~~e----------------~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 282 REVRKYLRARLLPPDKDRKKPPE----------------KGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred HHHHHHHHHHhCCChhhcccCCC----------------CCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence 88888888888888744222111 123466789999999889999999999999986544
No 99
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=0.00012 Score=71.95 Aligned_cols=300 Identities=16% Similarity=0.102 Sum_probs=161.2
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHH-HHHHHHHhhcCChhHHHHHHhC
Q 010291 8 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE-AVGVIGNLVHSSPNIKKEVLAA 86 (513)
Q Consensus 8 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~-a~~~L~~l~~~~~~~~~~~~~~ 86 (513)
+.++++......+..|...+..+..+ ..-..+.+.+++..+-..+++.++..+.. +..+.......-. ...+.
T Consensus 139 l~~ll~~~~~~~~~~aa~~~ag~v~g--~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg----~~~EP 212 (569)
T KOG1242|consen 139 LLELLTSTKIAERAGAAYGLAGLVNG--LGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG----PPFEP 212 (569)
T ss_pred HHHHhccccHHHHhhhhHHHHHHHcC--cHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC----CCCCc
Confidence 33444444444445555555554432 22233334455555555555443333332 2222222211100 11122
Q ss_pred CChHHHH---HhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccc
Q 010291 87 GALQPVI---GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 163 (513)
Q Consensus 87 g~i~~L~---~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 163 (513)
+.++.+- .-..+....+|..+..+...+.+.-+..... -+++.++.-+.+..=..+..++..++.++...+.+
T Consensus 213 yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~q 288 (569)
T KOG1242|consen 213 YIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQ 288 (569)
T ss_pred hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHH
Confidence 3333333 3334556778877777766665433322111 12344443333333356678899999998887878
Q ss_pred hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhh-hhHHHHHHH-HHHHHHHh
Q 010291 164 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ-ATKDCVAKT-LKRLEEKI 241 (513)
Q Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~-~~~~~~~~~-~~~~~~~~ 241 (513)
-...-...++.+.+.|.+.+++++..+..++..++.--++-. +. ..++.|++...... ....|...- ...+...+
T Consensus 289 Ls~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~--~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V 365 (569)
T KOG1242|consen 289 LSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQ--KIIPTLLDALADPSCYTPECLDSLGATTFVAEV 365 (569)
T ss_pred HHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HH--HHHHHHHHHhcCcccchHHHHHhhcceeeeeee
Confidence 778888999999999999999999999999999987333322 11 11222222111111 111221110 00111112
Q ss_pred hhhhHHHHHHHHHH----hhcchhhhHHHHHhhccCCCCcceeeec--CCchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291 242 HGRVLNHLLYLMRV----AEKGVQRRVALALAHLCSPDDQRTIFID--GGGLELLLGLLGSTNPKQQLDGAVALFKLANK 315 (513)
Q Consensus 242 ~~~~l~~Lv~lL~~----~~~~v~~~a~~aL~~l~~~~~~~~~l~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 315 (513)
+.-.+..++.+|+. .+...+..++.++.|+|.--+....+.. ...+|-|-..+.+..|++|..++.+|+.+.+.
T Consensus 366 ~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 366 DAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLER 445 (569)
T ss_pred cchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 33344455555544 6778889999999999975432222211 12345555555667899999999999888876
Q ss_pred ccccc
Q 010291 316 ATTLS 320 (513)
Q Consensus 316 ~~~~~ 320 (513)
....+
T Consensus 446 ~g~~~ 450 (569)
T KOG1242|consen 446 LGEVS 450 (569)
T ss_pred HHhhc
Confidence 55444
No 100
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.99 E-value=0.00074 Score=65.02 Aligned_cols=156 Identities=32% Similarity=0.424 Sum_probs=121.9
Q ss_pred ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKE 82 (513)
Q Consensus 4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~ 82 (513)
+++.+..++.+.++.+|..|+.+|+.+-. ...++.++.++. +++..+|..+.++|+.+-..
T Consensus 75 av~~l~~~l~d~~~~vr~~a~~aLg~~~~-----------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~------- 136 (335)
T COG1413 75 AVPLLRELLSDEDPRVRDAAADALGELGD-----------PEAVPPLVELLENDENEGVRAAAARALGKLGDE------- 136 (335)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHccCC-----------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-------
Confidence 57888999999999999999998887764 236889999999 68999999999999998532
Q ss_pred HHhCCChHHHHHhhcCCCh------------HHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHH
Q 010291 83 VLAAGALQPVIGLLSSCCS------------ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSA 150 (513)
Q Consensus 83 ~~~~g~i~~L~~ll~~~~~------------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~ 150 (513)
..+..++..+.+... .++..+...|..+- + ...++.+...+.+.+..++..+.
T Consensus 137 ----~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~--~---------~~~~~~l~~~l~~~~~~vr~~Aa 201 (335)
T COG1413 137 ----RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG--D---------PEAIPLLIELLEDEDADVRRAAA 201 (335)
T ss_pred ----hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC--C---------hhhhHHHHHHHhCchHHHHHHHH
Confidence 136677777776541 45666666666663 1 23577889999999989999999
Q ss_pred HHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccC
Q 010291 151 FALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 200 (513)
Q Consensus 151 ~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 200 (513)
.+|..+.... ......+...+.+.+..++..++.+++.+-..
T Consensus 202 ~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~ 243 (335)
T COG1413 202 SALGQLGSEN--------VEAADLLVKALSDESLEVRKAALLALGEIGDE 243 (335)
T ss_pred HHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcc
Confidence 9999987644 23456788899999999999999998876643
No 101
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.99 E-value=2.1e-05 Score=59.04 Aligned_cols=86 Identities=34% Similarity=0.450 Sum_probs=70.0
Q ss_pred hhHHHHhh-ccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291 5 IPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 83 (513)
Q Consensus 5 i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 83 (513)
|+.|++.| +++++.+|..|+++|+.+.. + .+++.|+++++++++.+|..|+++|+.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIGD--------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCHH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence 57899999 88899999999999996643 1 358999999999999999999999998831
Q ss_pred HhCCChHHHHHhhcCCC-hHHHHHHHHHHH
Q 010291 84 LAAGALQPVIGLLSSCC-SESQREAALLLG 112 (513)
Q Consensus 84 ~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~ 112 (513)
..+++.|.+++.+++ ..++..|+.+|+
T Consensus 61 --~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 237889999887754 556888888774
No 102
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.98 E-value=0.0002 Score=64.34 Aligned_cols=254 Identities=11% Similarity=0.110 Sum_probs=156.6
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCChhHHHH-HHhCCChHHHHHhhcC--CChHHHHHHHHHHHHhhcCCchhhHHHHh-c
Q 010291 53 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKE-VLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIVQ-R 128 (513)
Q Consensus 53 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~ 128 (513)
+++.-++-.+..|+.+|.++... ++.|.. ..+...-..++.++.+ ++.+++++.+.+++-++.. +...+.+-. .
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K~~ 234 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDKMD 234 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHHHH
Confidence 33334566788999999999987 444444 4455566677888776 4578999999999999744 444432221 3
Q ss_pred CChHHHHHHhCCC-CHHHHHHHHHHHHHHhhcccc--chhhHhcCChHHHHHHhcCC---CHHHHHHHHHHHHhcccCcc
Q 010291 129 GAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLDSK---NGSLQHNAAFALYGLADNED 202 (513)
Q Consensus 129 ~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~ 202 (513)
..+..|+.+.++. ..++-+.++.++.|++...+. -..+...|.+.+.++.|... |.+++...-..=..|..+..
T Consensus 235 dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k 314 (432)
T COG5231 235 DLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTK 314 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhh
Confidence 4577788888765 667889999999999873321 22344456677777777543 34443322221112221111
Q ss_pred hHHH------HHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcc-hhhhHHHHHhhccC-C
Q 010291 203 NVAD------FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKG-VQRRVALALAHLCS-P 274 (513)
Q Consensus 203 ~~~~------~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~-v~~~a~~aL~~l~~-~ 274 (513)
.... -+..|.+.. . ..+-....|..+++.+.+ .+-.++..|.++++..++. .-.-||.-++.+.+ .
T Consensus 315 ~l~~fD~Y~~ELdsg~l~w----S-p~H~~~dFWs~N~d~l~k-dny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~ 388 (432)
T COG5231 315 KLCIFDNYLNELDSGRLEW----S-PYHHKKDFWSTNLDMLIK-DNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS 388 (432)
T ss_pred hhhHHHHHHHHHhhCcccC----C-CcccccCchhhhHHHHhh-hhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC
Confidence 1000 012221110 0 011112233333333321 2334788999999997665 44556666777765 5
Q ss_pred CCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhh
Q 010291 275 DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 314 (513)
Q Consensus 275 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 314 (513)
|+.+..+.+-|+-..+++++++++++++.+|..++..+..
T Consensus 389 PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 389 PEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred chHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 7788888899999999999999999999999999877654
No 103
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.00018 Score=69.44 Aligned_cols=266 Identities=15% Similarity=0.112 Sum_probs=170.8
Q ss_pred ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC---ChhHH
Q 010291 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS---SPNIK 80 (513)
Q Consensus 4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~---~~~~~ 80 (513)
.+|.|-+-+...++..|.--+..|..+-. .|+....-.-....+-|..+|.++++++|..+=.+|+++... +|..
T Consensus 168 ~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s- 245 (675)
T KOG0212|consen 168 FIPLLRERIYVINPMTRQFLVSWLYVLDS-VPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS- 245 (675)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhc-CCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc-
Confidence 34444444445678888777777776654 233222111234567788899999999998777666665421 1211
Q ss_pred HHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHH-HHHHHH---HHHHHH
Q 010291 81 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSA---FALGRL 156 (513)
Q Consensus 81 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~-~~~~a~---~~L~~l 156 (513)
+--...++.++.-+.++++.++..|...+..+..-.+. .....-+|++..++.++.+..+. .++.+. ..+..+
T Consensus 246 --~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~-~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l 322 (675)
T KOG0212|consen 246 --MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR-DLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKL 322 (675)
T ss_pred --cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc-chhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHH
Confidence 11234788889999999999999999999988754332 33445578888888888876553 333222 223344
Q ss_pred hhccccchhhHhc-CChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHH
Q 010291 157 AQDMHNQAGIAHN-GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLK 235 (513)
Q Consensus 157 ~~~~~~~~~~~~~-~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~ 235 (513)
+........ ++- ..+..+.+.+.++..+.+..++.-+..+-....+...
T Consensus 323 ~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~----------------------------- 372 (675)
T KOG0212|consen 323 VSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLL----------------------------- 372 (675)
T ss_pred Hhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhh-----------------------------
Confidence 433333333 332 3456688888888888888888777666543332111
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhc---CCCcchhhhHHHHHHHh
Q 010291 236 RLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG---STNPKQQLDGAVALFKL 312 (513)
Q Consensus 236 ~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~a~~~L~~l 312 (513)
+....+.+.|+.-|.+++.+|...++..++++|.++... +..+.+..++. ....-+...+.-.+.++
T Consensus 373 ----~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~------~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRql 442 (675)
T KOG0212|consen 373 ----VHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP------NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQL 442 (675)
T ss_pred ----hhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc------cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Confidence 124557888899999999999999999999999887655 33555555553 44444566676777776
Q ss_pred hh
Q 010291 313 AN 314 (513)
Q Consensus 313 ~~ 314 (513)
+.
T Consensus 443 C~ 444 (675)
T KOG0212|consen 443 CL 444 (675)
T ss_pred HH
Confidence 64
No 104
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.98 E-value=0.00016 Score=65.28 Aligned_cols=189 Identities=20% Similarity=0.184 Sum_probs=118.9
Q ss_pred hhHHHHhh----ccCCHHHHHHHHHHHHHhhccC--chhHHHHHhc--CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 010291 5 IPPLVELL----EFTDTKVQRAAAGALRTLAFKN--DENKNQIVEC--NALPTLILMLRSEDSAIHYEAVGVIGNLVHSS 76 (513)
Q Consensus 5 i~~Lv~lL----~~~~~~~~~~a~~~L~~l~~~~--~~~~~~i~~~--g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~ 76 (513)
+..+...| .+.++..|..|+..|..+..++ ......+.+. .++..+...+.+....+...|+.++..++..-
T Consensus 5 ~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l 84 (228)
T PF12348_consen 5 FEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL 84 (228)
T ss_dssp -GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34445555 5578999999999999999876 3333333321 45667778888778889999999999998543
Q ss_pred hhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010291 77 PNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 156 (513)
Q Consensus 77 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l 156 (513)
...-+.. -...++.|+..+.+....++..|..+|..++...+..... ..+.+...+++.++.++..++..+..+
T Consensus 85 ~~~~~~~-~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~ 158 (228)
T PF12348_consen 85 GSHFEPY-ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNPQVREECAEWLAII 158 (228)
T ss_dssp GGGGHHH-HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred hHhHHHH-HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3322222 2346788899998888899999999999998665411111 155677788889999999999999998
Q ss_pred hhccc-cchhhHh----cCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291 157 AQDMH-NQAGIAH----NGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 199 (513)
Q Consensus 157 ~~~~~-~~~~~~~----~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 199 (513)
..... ....+.. ...++.+.+.+.+++++++..|-.+++.+..
T Consensus 159 l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 159 LEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp HTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 75544 2222222 2356668899999999999999999998865
No 105
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.97 E-value=0.00046 Score=66.25 Aligned_cols=168 Identities=15% Similarity=0.150 Sum_probs=128.4
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291 7 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKEVL 84 (513)
Q Consensus 7 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 84 (513)
.+..++-+++.+++..+.++++.+.. +++....+.+.++--.++..|.. .+..-|++|+..++.+..-....+ .+
T Consensus 29 ~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~--~~ 105 (371)
T PF14664_consen 29 RIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK--EI 105 (371)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc--cC
Confidence 33433444458999999999999987 67788888888866667777763 345678899999988875522211 12
Q ss_pred hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccch
Q 010291 85 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA 164 (513)
Q Consensus 85 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 164 (513)
-.|++..++.+.++.+...+..|..+|+.++..+|+ .+...|++..|++.+.++..++.+..+.++..+...+..|+
T Consensus 106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~ 182 (371)
T PF14664_consen 106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRK 182 (371)
T ss_pred CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhh
Confidence 446888999999999999999999999999977765 56788999999999998766788999999999998888887
Q ss_pred hhHhcCChHHHHHHhc
Q 010291 165 GIAHNGGLVPLLKLLD 180 (513)
Q Consensus 165 ~~~~~~~i~~L~~ll~ 180 (513)
.+...--+..++.-+.
T Consensus 183 yl~~~~dL~~l~apft 198 (371)
T PF14664_consen 183 YLRPGFDLESLLAPFT 198 (371)
T ss_pred hhcCCccHHHHHHhhh
Confidence 6655444555554444
No 106
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.97 E-value=5e-05 Score=57.16 Aligned_cols=67 Identities=19% Similarity=0.286 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhHHHHHHhC
Q 010291 20 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 86 (513)
Q Consensus 20 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 86 (513)
+...++.|++++..++.++..+++.|+++.+++... ..+|-+++.|++++.+|+.+++++++.+.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 566789999999999999999999999999999877 5689999999999999999999998887654
No 107
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=7.7e-05 Score=74.90 Aligned_cols=184 Identities=15% Similarity=0.086 Sum_probs=128.8
Q ss_pred CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 81 (513)
Q Consensus 2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 81 (513)
++..+.++..++..+-+.+.-.--.+.+.+.+.++... +.+..++.=.+++++.+|..|++.++.+..+ ...+
T Consensus 48 SslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~-----~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~i~e 120 (734)
T KOG1061|consen 48 SSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI-----LAVNTFLKDCEDPNPLIRALALRTMGCLRVD--KITE 120 (734)
T ss_pred HhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH-----hhhhhhhccCCCCCHHHHHHHhhceeeEeeh--HHHH
Confidence 34556666676666666666666677777766555332 3455666666688999999999988877643 2112
Q ss_pred HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccc
Q 010291 82 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH 161 (513)
Q Consensus 82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 161 (513)
.....+...+++.++.++..++....++-..+ .+.....|.++.|-+++.++++.+..+|..+|..+.....
T Consensus 121 -----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 121 -----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred -----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 25678999999999999999999999996444 3456778999999999999999999999999999987665
Q ss_pred cc-hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccC
Q 010291 162 NQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 200 (513)
Q Consensus 162 ~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 200 (513)
+. ........+..++..+...+...+...+.++.+-...
T Consensus 193 ~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~ 232 (734)
T KOG1061|consen 193 SVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPK 232 (734)
T ss_pred CCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCC
Confidence 41 1111222344455555555566666666666655443
No 108
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.94 E-value=0.0014 Score=63.68 Aligned_cols=268 Identities=15% Similarity=0.133 Sum_probs=152.6
Q ss_pred hccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHH
Q 010291 12 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 91 (513)
Q Consensus 12 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 91 (513)
|++.-..+..++++.+..++..+ ......+ ..+..|-.+|++.....|-.|+++|..++...|+.. .+ .=+-
T Consensus 273 ls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv-~v----cN~e 344 (898)
T COG5240 273 LSDKFEMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV-SV----CNKE 344 (898)
T ss_pred hcCcchhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee-ee----cChh
Confidence 34444678889999888887643 1222222 246667777888889999999999999998766521 11 1123
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchh------
Q 010291 92 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG------ 165 (513)
Q Consensus 92 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~------ 165 (513)
+-.++.+.+..+...|..+|..- +.++..+.++. .++.+++=++++ .+..+..+++.|+-..+.++.
T Consensus 345 vEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv~--~I~sfvhD~SD~---FKiI~ida~rsLsl~Fp~k~~s~l~FL 417 (898)
T COG5240 345 VESLISDENRTISTYAITTLLKT--GTEETIDRLVN--LIPSFVHDMSDG---FKIIAIDALRSLSLLFPSKKLSYLDFL 417 (898)
T ss_pred HHHHhhcccccchHHHHHHHHHc--CchhhHHHHHH--HHHHHHHhhccC---ceEEeHHHHHHHHhhCcHHHHHHHHHH
Confidence 34455566666666666665543 44555554443 344444444333 344455555666544444322
Q ss_pred ---hHhcCC-------hHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHH
Q 010291 166 ---IAHNGG-------LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLK 235 (513)
Q Consensus 166 ---~~~~~~-------i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~ 235 (513)
+.++|+ ++.+..++. .+|+.++.|+..|+.+..+.+.....++- +..|-+.......
T Consensus 418 ~~~L~~eGg~eFK~~~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrI--L~iLG~EgP~a~~---------- 484 (898)
T COG5240 418 GSSLLQEGGLEFKKYMVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRI--LGILGREGPRAKT---------- 484 (898)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHH--HHHhcccCCCCCC----------
Confidence 233444 333444443 34566666766666665544433222210 0000000000000
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291 236 RLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 315 (513)
Q Consensus 236 ~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 315 (513)
-...+.++..-+--.+.-+|.+|..+|..++.+.+.. +........|-+.+++.++++|..|..++.++-..
T Consensus 485 ------P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~--~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~ 556 (898)
T COG5240 485 ------PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV--VSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLS 556 (898)
T ss_pred ------cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc--ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhh
Confidence 1124444555444467788999999998887654432 23344567788999999999999999999888643
No 109
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=97.93 E-value=2.3e-05 Score=60.82 Aligned_cols=49 Identities=24% Similarity=0.412 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhhhhhhHHHHH
Q 010291 448 VSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIH 496 (513)
Q Consensus 448 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~l~ 496 (513)
|+.++.+|..|++.+|.+.|.+||.+||.++.++++|.+||.+.+..+.
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL 49 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEIL 49 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHH
Confidence 7899999999999999999999999999999999999999766544443
No 110
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.00011 Score=72.21 Aligned_cols=216 Identities=19% Similarity=0.192 Sum_probs=137.7
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-----hHHHH
Q 010291 8 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-----NIKKE 82 (513)
Q Consensus 8 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~-----~~~~~ 82 (513)
+..+..+.++.++..|+..|..+..+..- .. -.....+.+|.+.+..||..|+.+++-...-.+ +.-+.
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL-~~-----~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKL-SK-----ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccc-cH-----HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 44444555566666666666555542111 11 125567888999999999999777766553321 11111
Q ss_pred HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhH---------------------------------------
Q 010291 83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV--------------------------------------- 123 (513)
Q Consensus 83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~--------------------------------------- 123 (513)
-..-.+...+...+++....+|..|+.+|+.+...+++...
T Consensus 277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ad 356 (823)
T KOG2259|consen 277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNAD 356 (823)
T ss_pred hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccccc
Confidence 11123566677777777777777777777666433332222
Q ss_pred -----------HHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHH
Q 010291 124 -----------HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAF 192 (513)
Q Consensus 124 -----------~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~ 192 (513)
.++.+|..-.++.-+.+.-.+|++.|+..++.|+.+.+.-. ...++-|+.++.+....++..|+.
T Consensus 357 vpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA----~~aldfLvDMfNDE~~~VRL~ai~ 432 (823)
T KOG2259|consen 357 VPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA----VRALDFLVDMFNDEIEVVRLKAIF 432 (823)
T ss_pred CchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccHHHHHHHHHHH
Confidence 23344555566666666667899999999999986544321 135778899999888899999999
Q ss_pred HHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhc
Q 010291 193 ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL 271 (513)
Q Consensus 193 ~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l 271 (513)
+|..++.+-. ++..-++.++..|.+.+.++|++.-..|.+.
T Consensus 433 aL~~Is~~l~--------------------------------------i~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 433 ALTMISVHLA--------------------------------------IREEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHHHHHHHhe--------------------------------------ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9888876522 1334567778888888888888877777655
No 111
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.00015 Score=69.65 Aligned_cols=192 Identities=12% Similarity=0.068 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC
Q 010291 61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS 140 (513)
Q Consensus 61 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~ 140 (513)
-...++.+|-.++..-...|.-+.+..+.+.|+++|.+++..+..-+...++|+.......+..+.+.|++..+++++.+
T Consensus 405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence 34445566777776655667777888899999999999888888888889999987778888899999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhcccc--chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccc
Q 010291 141 PDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQD 218 (513)
Q Consensus 141 ~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ 218 (513)
.|..++.+..|.++.+..+.+. +-++...-++..++.+..+++..+++..+..+.|+..+.....+. ...+..
T Consensus 485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEks-----kdv~~K 559 (743)
T COG5369 485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKS-----KDVFIK 559 (743)
T ss_pred chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccccccccccc-----ceeEEe
Confidence 9999999999999999977655 345666788889999999999999999999999997643221111 111111
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCc
Q 010291 219 GEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ 277 (513)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~ 277 (513)
.. -..-....|+.-++..+|-.-...+..|.+++..++.
T Consensus 560 ~~--------------------p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~ 598 (743)
T COG5369 560 AT--------------------PRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDT 598 (743)
T ss_pred cC--------------------hHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccch
Confidence 00 0112456677778887776667778888888765543
No 112
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.0014 Score=61.75 Aligned_cols=211 Identities=18% Similarity=0.223 Sum_probs=157.3
Q ss_pred CChhHHHHhhccCCHHHHHHHHHHHHHhhcc-----Cc----hhHHHHHhcCCHHHHHHhhcCCC------HHHHHHHHH
Q 010291 3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFK-----ND----ENKNQIVECNALPTLILMLRSED------SAIHYEAVG 67 (513)
Q Consensus 3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-----~~----~~~~~i~~~g~i~~Lv~lL~~~~------~~v~~~a~~ 67 (513)
++++.|+++|.+.|.++-...+..+..++.. +. .....+++.++++.|++.++.-+ .+-...++.
T Consensus 125 n~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~ 204 (536)
T KOG2734|consen 125 NAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLA 204 (536)
T ss_pred ccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHH
Confidence 6789999999999999999999999999752 11 33456778899999999887322 334556677
Q ss_pred HHHHhhcCChhHHHHHHhCCChHHHHHhhcC--CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC-----C
Q 010291 68 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-----S 140 (513)
Q Consensus 68 ~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~-----~ 140 (513)
.+-|+..-.+.....+++.|.+.-|+.-+.. .-..-+..|..+|.-+...+.+++..+-...++..+++-+. +
T Consensus 205 vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~d 284 (536)
T KOG2734|consen 205 VVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHD 284 (536)
T ss_pred HHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccC
Confidence 8888888778888888888877777664433 33455677788888887777777877878888888887774 1
Q ss_pred C----CHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCc---chHHHHHhhcCc
Q 010291 141 P----DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE---DNVADFIRVGGV 213 (513)
Q Consensus 141 ~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~g~i 213 (513)
| ..+..++...+|+.+...+.++..+....+++...-+++. ....+..++.+|-....++ +++..+++.+++
T Consensus 285 P~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGL 363 (536)
T KOG2734|consen 285 PATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGL 363 (536)
T ss_pred CCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhH
Confidence 1 3467889999999999999999999999998776666665 4445667888888777644 456666655544
Q ss_pred c
Q 010291 214 Q 214 (513)
Q Consensus 214 ~ 214 (513)
.
T Consensus 364 r 364 (536)
T KOG2734|consen 364 R 364 (536)
T ss_pred H
Confidence 3
No 113
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.88 E-value=0.00023 Score=72.79 Aligned_cols=271 Identities=16% Similarity=0.089 Sum_probs=158.1
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhC
Q 010291 7 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 86 (513)
Q Consensus 7 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 86 (513)
.|++.+.+++.+.|..|+.-|.+=.....-.-..=.+..++..++++|.+.+.+|+..|+.||+-++..-++.+-.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le---- 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE---- 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH----
Confidence 5778888999999999988766544322111111123457889999999999999999999999998543332211
Q ss_pred CChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC----C--CCHHHHHHHHHHHHHHhhcc
Q 010291 87 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ----S--PDVQLREMSAFALGRLAQDM 160 (513)
Q Consensus 87 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~----~--~~~~~~~~a~~~L~~l~~~~ 160 (513)
..+..|..-+-++....+.-+...|......-++.........+++.+...+. . +...++..++..++.+....
T Consensus 85 ~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~ 164 (1233)
T KOG1824|consen 85 TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF 164 (1233)
T ss_pred HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh
Confidence 12333443333344444444333333332222222222223333444444443 2 34447777777776665332
Q ss_pred ccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHH
Q 010291 161 HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 240 (513)
Q Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~ 240 (513)
..--.-.+.+.+..++.-+.+....++..++.+|+.++..-... .
T Consensus 165 g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~-l---------------------------------- 209 (1233)
T KOG1824|consen 165 GTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD-L---------------------------------- 209 (1233)
T ss_pred cccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH-H----------------------------------
Confidence 22111133445556667777778889999999999998633210 0
Q ss_pred hhhhhHHHHHHHHHH-hhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhh---cCCCcchhhhHHHHHHHhhhcc
Q 010291 241 IHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLL---GSTNPKQQLDGAVALFKLANKA 316 (513)
Q Consensus 241 ~~~~~l~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll---~~~~~~v~~~a~~~L~~l~~~~ 316 (513)
-.+++..|+.-|.. ..+..-..-..+|+.+|+....|.--.-...+|.+.+.. ...++++|+.+..++..+....
T Consensus 210 -y~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rc 288 (1233)
T KOG1824|consen 210 -YVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRC 288 (1233)
T ss_pred -HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhC
Confidence 01233344443433 223333344567777777655554334456788888888 5688899999999998887664
Q ss_pred c
Q 010291 317 T 317 (513)
Q Consensus 317 ~ 317 (513)
+
T Consensus 289 p 289 (1233)
T KOG1824|consen 289 P 289 (1233)
T ss_pred h
Confidence 4
No 114
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.87 E-value=1.5e-05 Score=60.63 Aligned_cols=87 Identities=25% Similarity=0.369 Sum_probs=66.3
Q ss_pred EEEEecCeeehhhHHHHh-hcCHHHHHhccCC---CCCCCCCceecCCCCHHHHHHHHHHHhc-CccccC-HHHHHHHHH
Q 010291 348 VTFLVEGRRFYAHRICLL-ASSDAFRAMFDGG---YREKDARDIEIPNIRWEVFELMMRFIYT-GSVDVT-LDIAQDLLR 421 (513)
Q Consensus 348 v~~~~~~~~~~~h~~il~-~~s~~f~~~~~~~---~~e~~~~~i~l~~~~~~~~~~~l~~~Y~-~~~~~~-~~~~~~ll~ 421 (513)
|.+.|||+.|.+-+..|. ....+|..|+.++ ........+-++ =+++.|+.+|+|+.+ +.++.+ ......++.
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD-Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~ 79 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID-RDPELFEYILNYLRTGGKLPIPDEICLEELLE 79 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES-S-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec-cChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence 578899999999999998 6677999999864 333445566664 599999999999999 666654 556889999
Q ss_pred HHHHhcHHHH-HHHH
Q 010291 422 AADQYLLEGL-KRLC 435 (513)
Q Consensus 422 ~A~~~~~~~l-~~~c 435 (513)
-|++|+++.+ ++.|
T Consensus 80 Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 80 EAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHT-HHHHBHHC
T ss_pred HHHHcCCCccccCCC
Confidence 9999999998 6655
No 115
>PF05536 Neurochondrin: Neurochondrin
Probab=97.83 E-value=0.0012 Score=66.85 Aligned_cols=195 Identities=18% Similarity=0.188 Sum_probs=140.9
Q ss_pred ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchh---HHHHHhcCCHHHHHHhhcC-------CCHHHHHHHHHHHHHhh
Q 010291 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN---KNQIVECNALPTLILMLRS-------EDSAIHYEAVGVIGNLV 73 (513)
Q Consensus 4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~---~~~i~~~g~i~~Lv~lL~~-------~~~~v~~~a~~~L~~l~ 73 (513)
.+...+++|++.+..-|..++-.+.++..+++.. ++.+.+.=+.+.+-++|++ +....+..|+.+|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 3567788899888888999999999999865532 3456676667888899986 34577888999999999
Q ss_pred cCChhHHHHHHhCCChHHHHHhhcCCCh-HHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHH
Q 010291 74 HSSPNIKKEVLAAGALQPVIGLLSSCCS-ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFA 152 (513)
Q Consensus 74 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~ 152 (513)
.+ ++....---.+-||.|++.+...+. ++...|..+|..++ ..++.+..+.+.|.++.|++.+.+ .+...+.+..+
T Consensus 86 ~~-~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 86 RD-PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred CC-hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 85 5543222223579999999988776 99999999999999 667888999999999999999988 55678899999
Q ss_pred HHHHhhccccchhhHh----cCChHHHHHHhcCCCHHHHHHHHHHHHhcccCc
Q 010291 153 LGRLAQDMHNQAGIAH----NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 201 (513)
Q Consensus 153 L~~l~~~~~~~~~~~~----~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 201 (513)
+.+++........-.. ...+..+...+.......+-..+..|..+-...
T Consensus 163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 9998865432111111 122334555555444455556677777665433
No 116
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.82 E-value=7.8e-05 Score=55.90 Aligned_cols=86 Identities=35% Similarity=0.506 Sum_probs=70.0
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHH
Q 010291 47 LPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 125 (513)
Q Consensus 47 i~~Lv~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 125 (513)
|+.|++.| +++++.+|..++++|+++-. + .+++.|..+++++++.++..|+++|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57899988 78999999999999996531 2 25889999999999999999999999983
Q ss_pred HhcCChHHHHHHhCCC-CHHHHHHHHHHHH
Q 010291 126 VQRGAVRPLIEMLQSP-DVQLREMSAFALG 154 (513)
Q Consensus 126 ~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~ 154 (513)
....++.|.+++.++ +..++..|+.+|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 124788999999876 5567888888874
No 117
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.81 E-value=1.5e-05 Score=75.15 Aligned_cols=131 Identities=21% Similarity=0.190 Sum_probs=113.6
Q ss_pred CeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccCHHHHH---HHHHHHHHhcHHH
Q 010291 354 GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQ---DLLRAADQYLLEG 430 (513)
Q Consensus 354 ~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~---~ll~~A~~~~~~~ 430 (513)
++.+..|+.+++++|+.|+.|+..+..+.....+.+.+.+++.++.+..|.|...-....+... ..+..+.+++.+.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~ 188 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRH 188 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHH
Confidence 5669999999999999999999887666666677888999999999999999976665566555 8899999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCcHHHHHHHHHHHHH--HHHHhhCchhh
Q 010291 431 LKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIME--HFDKLSTRPGH 484 (513)
Q Consensus 431 l~~~c~~~l~~~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~--~~~~~~~~~~f 484 (513)
++..|...+...++..++...+..+..++...+...+..++.. ++..+.++.++
T Consensus 189 lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~ 244 (297)
T KOG1987|consen 189 LKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNE 244 (297)
T ss_pred HHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999986 66666654444
No 118
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.79 E-value=9.9e-05 Score=66.71 Aligned_cols=184 Identities=18% Similarity=0.174 Sum_probs=116.3
Q ss_pred cCCChHHHHHHHHHHHHhhcCC--chhhHHHHh--cCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCCh
Q 010291 97 SSCCSESQREAALLLGQFAATD--SDCKVHIVQ--RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL 172 (513)
Q Consensus 97 ~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~--~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i 172 (513)
.+.+++.+..++.-|..+..++ ......+.+ ..++..+...+.+....+...|+.++..++..-...-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4578889999999999998665 222222221 256677888888878889999999999999654443222234567
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhh-HHHHHH
Q 010291 173 VPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV-LNHLLY 251 (513)
Q Consensus 173 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~Lv~ 251 (513)
+.|++.+.+++..++..|..+|..++.+-... ..+ ++.+..
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~--------------------------------------~~~~~~~l~~ 138 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYS--------------------------------------PKILLEILSQ 138 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H----------------------------------------HHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcH--------------------------------------HHHHHHHHHH
Confidence 88999999988899999999999988754311 112 455666
Q ss_pred HHHHhhcchhhhHHHHHhhccCCCC-cceeeec----CCchHHHHhhhcCCCcchhhhHHHHHHHhhhcccc
Q 010291 252 LMRVAEKGVQRRVALALAHLCSPDD-QRTIFID----GGGLELLLGLLGSTNPKQQLDGAVALFKLANKATT 318 (513)
Q Consensus 252 lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~l~~----~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 318 (513)
.+.+.++.+|..++..+..+...-. ....+.. ...++.+...+.+.++++|..|-.++..+....+.
T Consensus 139 ~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 139 GLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 7778899999999999988865432 2222222 23568888889999999999999999888766443
No 119
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.0014 Score=65.41 Aligned_cols=99 Identities=10% Similarity=0.116 Sum_probs=77.7
Q ss_pred hccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHH
Q 010291 12 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 91 (513)
Q Consensus 12 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 91 (513)
+++++....--|+..|..+.. ++..+.+ .+-++.+|.+..+.+|..|+.++..+...-++.-.. .++.
T Consensus 118 l~S~n~ye~giAL~GLS~fvT--pdLARDL-----a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~-----~Fpr 185 (877)
T KOG1059|consen 118 LNSSNVYEVGLALSGLSCIVT--PDLARDL-----ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP-----CFPR 185 (877)
T ss_pred hccCccchhhheecccccccC--chhhHHH-----HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh-----hHHH
Confidence 456665555667777777764 4544433 566889999999999999999999998765554322 5899
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhcCCchhh
Q 010291 92 VIGLLSSCCSESQREAALLLGQFAATDSDCK 122 (513)
Q Consensus 92 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 122 (513)
|.+-|+++|+.++..|+.+++.|++.+|.+.
T Consensus 186 L~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 186 LVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred HHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 9999999999999999999999999888654
No 120
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.0035 Score=63.35 Aligned_cols=282 Identities=17% Similarity=0.151 Sum_probs=153.3
Q ss_pred HHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCC
Q 010291 9 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 88 (513)
Q Consensus 9 v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 88 (513)
-+-|+++|+-+|..|+++|..+--. ++..-++-.+-++..+..+.||..|+.++-++-.-.++.+..+
T Consensus 114 Qk~L~DpN~LiRasALRvlSsIRvp-------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL----- 181 (968)
T KOG1060|consen 114 QKALKDPNQLIRASALRVLSSIRVP-------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL----- 181 (968)
T ss_pred HhhhcCCcHHHHHHHHHHHHhcchh-------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH-----
Confidence 3445555555555555555544220 1110011122233345667777777777777755444444432
Q ss_pred hHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchh---
Q 010291 89 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG--- 165 (513)
Q Consensus 89 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~--- 165 (513)
+..+-.+|.+.++-|.-.|+.+...+| |+..+.+. +-...++.++.+-+.--+...+..|..-|+..-.+..
T Consensus 182 ~e~I~~LLaD~splVvgsAv~AF~evC---PerldLIH--knyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~ 256 (968)
T KOG1060|consen 182 EEVIKKLLADRSPLVVGSAVMAFEEVC---PERLDLIH--KNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVD 256 (968)
T ss_pred HHHHHHHhcCCCCcchhHHHHHHHHhc---hhHHHHhh--HHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccc
Confidence 445556666777777777777777776 44333222 4566677777666655565566666655543211110
Q ss_pred --hHhcC--------------------C----hHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccch
Q 010291 166 --IAHNG--------------------G----LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDG 219 (513)
Q Consensus 166 --~~~~~--------------------~----i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~ 219 (513)
..+.| - ++..-.++.+.++.+...++.+.+.++...+.. .+ +.+|+++
T Consensus 257 ~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~-~i-----~kaLvrL 330 (968)
T KOG1060|consen 257 SSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVT-KI-----AKALVRL 330 (968)
T ss_pred cccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHH-HH-----HHHHHHH
Confidence 00011 1 222335667788899999999999998643221 11 1122221
Q ss_pred hhhhhhhHHHH-------------------------------H--HHHHHHHHHhhhh----hHHHHHHHHHHhhcchhh
Q 010291 220 EFIVQATKDCV-------------------------------A--KTLKRLEEKIHGR----VLNHLLYLMRVAEKGVQR 262 (513)
Q Consensus 220 ~~~~~~~~~~~-------------------------------~--~~~~~~~~~~~~~----~l~~Lv~lL~~~~~~v~~ 262 (513)
..+....+..+ . .-++.+..+.+.. +++.+-...++.+..+-.
T Consensus 331 Lrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa 410 (968)
T KOG1060|consen 331 LRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAA 410 (968)
T ss_pred HhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHH
Confidence 11111111000 0 0112223333333 455555566666666777
Q ss_pred hHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291 263 RVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 317 (513)
Q Consensus 263 ~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 317 (513)
.+..+|+.++.... -+...++.-|+.++.+.+..+..++...+..|....+
T Consensus 411 ~aV~AiGrCA~~~~----sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p 461 (968)
T KOG1060|consen 411 AAVKAIGRCASRIG----SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP 461 (968)
T ss_pred HHHHHHHHHHHhhC----chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh
Confidence 88888888865321 2334567889999999888898999999998887644
No 121
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.0013 Score=65.39 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=69.7
Q ss_pred HhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChhHHHHHHhCC
Q 010291 10 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 87 (513)
Q Consensus 10 ~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 87 (513)
.-|.+.|+....-|+.+++++.. .+.++.+... |+ .+|.+ ....+++.|+-+|..|-+.+++.. -..+
T Consensus 118 nDL~srn~~fv~LAL~~I~niG~--re~~ea~~~D--I~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~---~~~~ 187 (938)
T KOG1077|consen 118 NDLSSRNPTFVCLALHCIANIGS--REMAEAFADD--IP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLV---NPGE 187 (938)
T ss_pred hhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhhhh--hH---HHHhCCcchHHHHHHHHHHHHHHHhcCcccc---Chhh
Confidence 34456677777888888888874 4555555332 33 55554 346788888888888888776541 1124
Q ss_pred ChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchh
Q 010291 88 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 121 (513)
Q Consensus 88 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 121 (513)
....++.+|++.+..+...+...+..++...++.
T Consensus 188 W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~ 221 (938)
T KOG1077|consen 188 WAQRIVHLLDDQHMGVVTAATSLIEALVKKNPES 221 (938)
T ss_pred HHHHHHHHhCccccceeeehHHHHHHHHHcCCHH
Confidence 6778889998888877777777777777665553
No 122
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.73 E-value=0.00018 Score=54.15 Aligned_cols=67 Identities=13% Similarity=0.184 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhc--CCChHHHHHHHHHHHHhhcCCchhhHHHHh
Q 010291 61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQ 127 (513)
Q Consensus 61 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 127 (513)
++...+++|++++..++..++.+.+.|+++.++.... ..+|-++++|.+++.||+.++++++..+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4567889999999999999999999999999998754 467899999999999999999998876654
No 123
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.68 E-value=0.00013 Score=52.64 Aligned_cols=74 Identities=26% Similarity=0.453 Sum_probs=60.8
Q ss_pred cCeeehhhHHHHhhcCHHHHHhccCC--CCCCCCCceecCCCCHHHHHHHHHHH-----hcCc------cccCHHHHHHH
Q 010291 353 EGRRFYAHRICLLASSDAFRAMFDGG--YREKDARDIEIPNIRWEVFELMMRFI-----YTGS------VDVTLDIAQDL 419 (513)
Q Consensus 353 ~~~~~~~h~~il~~~s~~f~~~~~~~--~~e~~~~~i~l~~~~~~~~~~~l~~~-----Y~~~------~~~~~~~~~~l 419 (513)
+|..|-..|. .+..|+-.|+||+|. +.+...++|.+++++...++.+.+|+ |++. .+++++-+.+|
T Consensus 25 Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleL 103 (112)
T KOG3473|consen 25 DDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALEL 103 (112)
T ss_pred CCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHH
Confidence 4566766666 466899999999975 56677789999999999999999998 4444 35889999999
Q ss_pred HHHHHHhc
Q 010291 420 LRAADQYL 427 (513)
Q Consensus 420 l~~A~~~~ 427 (513)
+.+|+++.
T Consensus 104 L~aAn~Le 111 (112)
T KOG3473|consen 104 LMAANYLE 111 (112)
T ss_pred HHHhhhhc
Confidence 99999985
No 124
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.0019 Score=65.11 Aligned_cols=230 Identities=16% Similarity=0.127 Sum_probs=130.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHH
Q 010291 47 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 126 (513)
Q Consensus 47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 126 (513)
|..+-+-|+++|+.+|..|+++|..+=.. ++..=++-++-+...+..+-||..|+.++-.+-+-+++....+.
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsIRvp-------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~ 182 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSIRVP-------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE 182 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhcchh-------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH
Confidence 34444556678888888888887666321 11111233344455667788999999999999887777666443
Q ss_pred hcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHH-
Q 010291 127 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVA- 205 (513)
Q Consensus 127 ~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~- 205 (513)
..+-.+|.+.++.|.-.|+.+...+|- ++-.++. +....+-+++.+-+..-+..++..|...|++.-...
T Consensus 183 -----e~I~~LLaD~splVvgsAv~AF~evCP---erldLIH-knyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~ 253 (968)
T KOG1060|consen 183 -----EVIKKLLADRSPLVVGSAVMAFEEVCP---ERLDLIH-KNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPT 253 (968)
T ss_pred -----HHHHHHhcCCCCcchhHHHHHHHHhch---hHHHHhh-HHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCcc
Confidence 355567777888888888888887763 3333333 445567777777676667777777776665221111
Q ss_pred ---HHH-hhcCcccccchh------hhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCC
Q 010291 206 ---DFI-RVGGVQKLQDGE------FIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 275 (513)
Q Consensus 206 ---~~~-~~g~i~~L~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~ 275 (513)
... ..|.-..+.... ...+.+. .-++...-.+|.+.++.|..+++.+..+++...
T Consensus 254 ~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~---------------~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~ 318 (968)
T KOG1060|consen 254 VVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDL---------------KLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN 318 (968)
T ss_pred ccccccccCcccccccccccccCCCcccCccH---------------HHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH
Confidence 111 111000000000 0000000 012333445666777778888888888877543
Q ss_pred CcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhh
Q 010291 276 DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 314 (513)
Q Consensus 276 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 314 (513)
+. .+.++.|+++|.+ ++.+|.-....+..++.
T Consensus 319 ~~------~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~ 350 (968)
T KOG1060|consen 319 QV------TKIAKALVRLLRS-NREVQYVVLQNIATISI 350 (968)
T ss_pred HH------HHHHHHHHHHHhc-CCcchhhhHHHHHHHHh
Confidence 21 2346777777765 34555555555555543
No 125
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.0059 Score=60.36 Aligned_cols=298 Identities=16% Similarity=0.074 Sum_probs=179.0
Q ss_pred ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 83 (513)
Q Consensus 4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 83 (513)
.++.+.+-+..+++++|+....+|..+......... ....+.+.+++......-+..+.+.++.+..+... ..+
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~~ 170 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ESL 170 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hhh
Confidence 356677777888999999888888877652221111 12356677888877888899999999999876433 556
Q ss_pred HhCCChHHHHHhhcCCChHHHHH-HHHHHHHhhcC-CchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccc
Q 010291 84 LAAGALQPVIGLLSSCCSESQRE-AALLLGQFAAT-DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH 161 (513)
Q Consensus 84 ~~~g~i~~L~~ll~~~~~~~~~~-a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 161 (513)
.+.+.+..+...+.+.....++. +..+....+.. .+...-.+ ...+|.++..+.+..+.+|..+..+...+...-.
T Consensus 171 ~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyi--v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~ 248 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYI--VPILPSILTNFGDKINKVREAAVEAAKAIMRCLS 248 (569)
T ss_pred hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchH--HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence 67788899998888765544443 33333222211 11111111 1245556666667788888888777776653222
Q ss_pred cchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhh-hhhhhHHHHHHHHHHHHHH
Q 010291 162 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF-IVQATKDCVAKTLKRLEEK 240 (513)
Q Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~-~~~~~~~~~~~~~~~~~~~ 240 (513)
... -...++.++.-+..........++..++.++.....+........+|.+.+... +....+.-..+++.++..+
T Consensus 249 ~~a---VK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~sv 325 (569)
T KOG1242|consen 249 AYA---VKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSV 325 (569)
T ss_pred cch---hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 110 011233433333333677788899999999888877778888888888776444 3334455556677777766
Q ss_pred hhhhhHHHHHHHHHH--hhcc-hhhhHHHHHhhccCCCCcceeeecCCc----hHHHHhhhcCCCcchhhhHHHHHHHhh
Q 010291 241 IHGRVLNHLLYLMRV--AEKG-VQRRVALALAHLCSPDDQRTIFIDGGG----LELLLGLLGSTNPKQQLDGAVALFKLA 313 (513)
Q Consensus 241 ~~~~~l~~Lv~lL~~--~~~~-v~~~a~~aL~~l~~~~~~~~~l~~~~~----i~~L~~ll~~~~~~v~~~a~~~L~~l~ 313 (513)
.+..-|..++..|-. .++. --..+...|+.-.- ...++.-. +|.|.+-+...+...++.++..+.|++
T Consensus 326 idN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttF-----V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~ 400 (569)
T KOG1242|consen 326 IDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTF-----VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMC 400 (569)
T ss_pred hccHHHHHHHHHHHHHhcCcccchHHHHHhhcceee-----eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHH
Confidence 666544444443333 2333 22233333332111 11222222 455666666678888899999999988
Q ss_pred hccc
Q 010291 314 NKAT 317 (513)
Q Consensus 314 ~~~~ 317 (513)
.-.+
T Consensus 401 ~Lve 404 (569)
T KOG1242|consen 401 KLVE 404 (569)
T ss_pred Hhhc
Confidence 7643
No 126
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.59 E-value=0.0013 Score=65.76 Aligned_cols=303 Identities=11% Similarity=0.040 Sum_probs=168.5
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCC
Q 010291 8 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 87 (513)
Q Consensus 8 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 87 (513)
+++-.++++.+.+.-.+.++..+|. ....-...+...+++.+...........-...-..|-..+ ....+.+....
T Consensus 641 l~rEf~sPDeemkkivLKVv~qcc~-t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~tt---v~ia~KvG~~~ 716 (1172)
T KOG0213|consen 641 LIREFGSPDEEMKKIVLKVVKQCCA-TDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTT---VEIAAKVGSDP 716 (1172)
T ss_pred HHHhhCCChHHHHHHHHHHHHHHhc-ccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHH---HHHHHHhCchH
Confidence 4444567888888888888888886 4555556666667777776655211100000001111111 11112221122
Q ss_pred ChHHHHHhhcCCChHHHHHHHHHHHHhhcCCc-hhhHHHHhcCChHHHHHHhCCC--CHHHHHHHHHHHHHHhhccccch
Q 010291 88 ALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQDMHNQA 164 (513)
Q Consensus 88 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~ 164 (513)
.+..++.=+.++.+..+...+.+..++...-+ .....-.+...+..++..+++. ...+.-.+..++.|=. ..|.
T Consensus 717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~l---g~r~ 793 (1172)
T KOG0213|consen 717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNAL---GGRV 793 (1172)
T ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHH---hhcc
Confidence 44555555666777777777777666652211 1111222334566777777654 3334455555554422 1111
Q ss_pred hhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHH---HHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHh
Q 010291 165 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD---FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 241 (513)
Q Consensus 165 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (513)
+-.-...+..++..|.++++.++..|+..++.++.--..+.+ +...|.+ ..-.+..........+.+++..+..+.
T Consensus 794 kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv-LyEylgeeypEvLgsILgAikaI~nvi 872 (1172)
T KOG0213|consen 794 KPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV-LYEYLGEEYPEVLGSILGAIKAIVNVI 872 (1172)
T ss_pred ccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH-HHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence 111123345677889999999999999999988763222222 2222221 111111111222233344444444333
Q ss_pred --------hhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeec-CCchHHHHhhhcCCCcchhhhHHHHHHHh
Q 010291 242 --------HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKL 312 (513)
Q Consensus 242 --------~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 312 (513)
-.+++|.|..+|++.+..|++++...++.+|.......-..+ .-.---|+.+|.+-+.++|+.|...+..+
T Consensus 873 gm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~I 952 (1172)
T KOG0213|consen 873 GMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYI 952 (1172)
T ss_pred cccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 357899999999999999999999999999864332110000 00123477778888889999999999988
Q ss_pred hhcccc
Q 010291 313 ANKATT 318 (513)
Q Consensus 313 ~~~~~~ 318 (513)
++-..+
T Consensus 953 akaIGP 958 (1172)
T KOG0213|consen 953 AKAIGP 958 (1172)
T ss_pred HHhcCH
Confidence 875443
No 127
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.57 E-value=0.0022 Score=65.96 Aligned_cols=291 Identities=16% Similarity=0.128 Sum_probs=158.3
Q ss_pred CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHH
Q 010291 15 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 94 (513)
Q Consensus 15 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 94 (513)
.+.+++++|..+++.+...-.+. ...--...++.+++-| ++.-.|..|++++..++...-..-..-.-..+++.+..
T Consensus 582 ~DqeVkeraIscmgq~i~~fgD~-l~~eL~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~ 658 (1233)
T KOG1824|consen 582 SDQEVKERAISCMGQIIANFGDF-LGNELPRTLPILLERL--GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELAS 658 (1233)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHH--hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHH
Confidence 46889999999998887521111 0000112344444444 46678999999999998654332211122346777777
Q ss_pred hhcCCChHHHHHHHHHHHHhhcCCchhh-HHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChH
Q 010291 95 LLSSCCSESQREAALLLGQFAATDSDCK-VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLV 173 (513)
Q Consensus 95 ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~ 173 (513)
.+......++.....++..|........ ..+. .-++..+..++.+.+..+.+.|...|..+....+..........++
T Consensus 659 flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~-e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~ 737 (1233)
T KOG1824|consen 659 FLRKNQRALRLATLTALDKLVKNYSDSIPAELL-EAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILD 737 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHH
Confidence 7776666677666666666653221111 1111 1234456666777888899999999999988776655445566788
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH----hccc--Ccch-HHHHHh--hcCcccccc---hhhhhhhhHHHHHHHHHHHHHHh
Q 010291 174 PLLKLLDSKNGSLQHNAAFALY----GLAD--NEDN-VADFIR--VGGVQKLQD---GEFIVQATKDCVAKTLKRLEEKI 241 (513)
Q Consensus 174 ~L~~ll~~~~~~~~~~a~~~L~----~l~~--~~~~-~~~~~~--~g~i~~L~~---~~~~~~~~~~~~~~~~~~~~~~~ 241 (513)
.++.+++++- ++..|+.++. .+.. .++. ...... .+-+..-+. ..........|++.-.......
T Consensus 738 ~ii~ll~Spl--lqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~- 814 (1233)
T KOG1824|consen 738 EIIRLLRSPL--LQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQK- 814 (1233)
T ss_pred HHHHHhhCcc--ccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhcccc-
Confidence 8999998764 2222222222 2222 1111 111111 011110000 0012233445544322222211
Q ss_pred hhhhHHHHHHHHHH--hhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291 242 HGRVLNHLLYLMRV--AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 315 (513)
Q Consensus 242 ~~~~l~~Lv~lL~~--~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 315 (513)
.......|+.-+++ .+..++.-|...++.+-+..+. ....+.-..++..+++++.+++.+|+.||++++.+
T Consensus 815 s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~---s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vg 887 (1233)
T KOG1824|consen 815 SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL---SPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVG 887 (1233)
T ss_pred chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC---CcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcC
Confidence 22234444444443 3455677777777777654331 11223345677778888888888888888888763
No 128
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.55 E-value=0.00014 Score=48.83 Aligned_cols=55 Identities=36% Similarity=0.391 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 010291 17 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL 72 (513)
Q Consensus 17 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l 72 (513)
|.+|..|+++|++++...++.... ....+++.|+.+|+++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578999999999998765555444 4445799999999999999999999999875
No 129
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.53 E-value=0.0033 Score=66.46 Aligned_cols=259 Identities=15% Similarity=0.102 Sum_probs=150.7
Q ss_pred CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC---ChhHHHHHHhCCChHH
Q 010291 15 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS---SPNIKKEVLAAGALQP 91 (513)
Q Consensus 15 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~g~i~~ 91 (513)
...+.+..|+..|..++..-. ....-..++|.++.++.++..+||..|+.+|..+... -+..-..++..-.+|.
T Consensus 435 k~~~tK~~ALeLl~~lS~~i~---de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~ 511 (1431)
T KOG1240|consen 435 KTIQTKLAALELLQELSTYID---DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPH 511 (1431)
T ss_pred hcchhHHHHHHHHHHHhhhcc---hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhh
Confidence 356788999999999887421 1122234799999999999999999999999888632 2222344555567888
Q ss_pred HHHhhcC-CChHHHHHHHHHHHHhhcC------------------Cchh----------hHHHHhcCChHHHHHHhCCCC
Q 010291 92 VIGLLSS-CCSESQREAALLLGQFAAT------------------DSDC----------KVHIVQRGAVRPLIEMLQSPD 142 (513)
Q Consensus 92 L~~ll~~-~~~~~~~~a~~~L~~l~~~------------------~~~~----------~~~~~~~~~i~~L~~~l~~~~ 142 (513)
|-.++.+ ....++..-+..|..|+.. +++. .......++-..+..++.+++
T Consensus 512 L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~ 591 (1431)
T KOG1240|consen 512 LNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSP 591 (1431)
T ss_pred hHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCc
Confidence 8888887 3444454444444444310 1110 000011122233445555555
Q ss_pred HHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhh
Q 010291 143 VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFI 222 (513)
Q Consensus 143 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~ 222 (513)
+-|+..-+..|.-||.-...++ .+.-.+..|...|.+.|+.++..-...|..+|..-..+
T Consensus 592 ~~Vkr~Lle~i~~LC~FFGk~k--sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r------------------ 651 (1431)
T KOG1240|consen 592 PIVKRALLESIIPLCVFFGKEK--SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR------------------ 651 (1431)
T ss_pred hHHHHHHHHHHHHHHHHhhhcc--cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee------------------
Confidence 5666655555666653111100 01112445667777777666665555555544321110
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchh
Q 010291 223 VQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQ 302 (513)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 302 (513)
-.+...+|.|.+-|.++++.|...|++++.-|+...-.++..+ -..++...-++..++.=+|
T Consensus 652 -----------------s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v-~~i~~~v~PlL~hPN~WIR 713 (1431)
T KOG1240|consen 652 -----------------SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV-KDILQDVLPLLCHPNLWIR 713 (1431)
T ss_pred -----------------eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH-HHHHHhhhhheeCchHHHH
Confidence 0134467777777888888888888888888876554332211 1244555566667777888
Q ss_pred hhHHHHHHHhhh
Q 010291 303 LDGAVALFKLAN 314 (513)
Q Consensus 303 ~~a~~~L~~l~~ 314 (513)
..++..+...+.
T Consensus 714 ~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 714 RAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHHHHHh
Confidence 888777776654
No 130
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=97.52 E-value=0.00014 Score=56.16 Aligned_cols=47 Identities=11% Similarity=0.191 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhhhhhhHHH
Q 010291 448 VSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPE 494 (513)
Q Consensus 448 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~ 494 (513)
|+.++.+|+.|+++.|.+.|.+||.+||..+.++++|.+||.+.+.+
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~ 47 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLS 47 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHH
Confidence 56789999999999999999999999999999999999997654443
No 131
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.51 E-value=0.00018 Score=48.27 Aligned_cols=55 Identities=31% Similarity=0.381 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010291 101 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 156 (513)
Q Consensus 101 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l 156 (513)
+.+|..|+++|++++...++.... ....+++.|+.+|+++++.|+..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999988665554433 4567899999999999999999999999875
No 132
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.50 E-value=0.014 Score=50.83 Aligned_cols=147 Identities=15% Similarity=0.196 Sum_probs=111.0
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCCh-hHHHHHHhCCChHHHH
Q 010291 20 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHSSP-NIKKEVLAAGALQPVI 93 (513)
Q Consensus 20 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~ 93 (513)
..+|+..|.-++. +++.+..+.+..+--.+-.+|.. +...+|..+++.++.+....+ +.-..+...++++..+
T Consensus 96 VcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 96 VCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred HHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 4567777777777 79999999998876667777762 457799999999999997544 4556677889999999
Q ss_pred HhhcCCChHHHHHHHHHHHHhhcCCchhhH------HHHh-cCChH-HHHHHhCCCCHHHHHHHHHHHHHHhhccccchh
Q 010291 94 GLLSSCCSESQREAALLLGQFAATDSDCKV------HIVQ-RGAVR-PLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG 165 (513)
Q Consensus 94 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~------~~~~-~~~i~-~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~ 165 (513)
+.++.+....+..|..++..+..++....- .+.. ...+. .+.++.+.+++.+.++++++..+|+.++..|..
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~a 254 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAA 254 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999999999866553221 1111 11223 334555678999999999999999988877765
Q ss_pred hH
Q 010291 166 IA 167 (513)
Q Consensus 166 ~~ 167 (513)
+.
T Consensus 255 L~ 256 (293)
T KOG3036|consen 255 LR 256 (293)
T ss_pred HH
Confidence 54
No 133
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.50 E-value=0.00019 Score=62.60 Aligned_cols=88 Identities=17% Similarity=0.277 Sum_probs=64.7
Q ss_pred CCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCC--ceecCCCCHHHHHHHHHHHhcCccccC---HHHH
Q 010291 342 NATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR--DIEIPNIRWEVFELMMRFIYTGSVDVT---LDIA 416 (513)
Q Consensus 342 ~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~--~i~l~~~~~~~~~~~l~~~Y~~~~~~~---~~~~ 416 (513)
.....|+.+......|++||++|++|+|+|+-+.+++-...... .+..-+++-+.|+.+|+|+|+|..-+. ..++
T Consensus 127 ~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgmEd~~fqn~ 206 (401)
T KOG2838|consen 127 RKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGMEDLGFQNS 206 (401)
T ss_pred eeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccchhhcCCchH
Confidence 34556888888889999999999999999999887643222222 345557899999999999999987543 3445
Q ss_pred HHHHHHHHHhcHH
Q 010291 417 QDLLRAADQYLLE 429 (513)
Q Consensus 417 ~~ll~~A~~~~~~ 429 (513)
.-+-.++.-|+.+
T Consensus 207 diL~QL~edFG~~ 219 (401)
T KOG2838|consen 207 DILEQLCEDFGCF 219 (401)
T ss_pred HHHHHHHHhhCCc
Confidence 5556666666643
No 134
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.47 E-value=0.00031 Score=43.69 Aligned_cols=39 Identities=38% Similarity=0.609 Sum_probs=36.0
Q ss_pred chhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 010291 35 DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 73 (513)
Q Consensus 35 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~ 73 (513)
++++..+.+.|+++.|+++|.+++++++..++++|+|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 357888999999999999999989999999999999997
No 135
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.0051 Score=66.63 Aligned_cols=298 Identities=16% Similarity=0.104 Sum_probs=165.7
Q ss_pred CHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHh
Q 010291 16 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 95 (513)
Q Consensus 16 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 95 (513)
.+.-+..|+..++.++.. ...+..-.-...||.|.+.=.++++.|+..-..+...|..++....+... ..++.-|+.-
T Consensus 970 ~wnSk~GaAfGf~~i~~~-a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~ 1047 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQ-AGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVN 1047 (1702)
T ss_pred hhhcccchhhchHHHHHH-HHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHh
Confidence 356677888888888873 22222222234577777776688999988777666667666544433322 3467777777
Q ss_pred hcCCChHHHHHHHHHHHHhhcCCchhhHHHHh--cCChHHHHHHhCCCCHHHHHH---HHHHHHHHhhcc-ccchhhHhc
Q 010291 96 LSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGAVRPLIEMLQSPDVQLREM---SAFALGRLAQDM-HNQAGIAHN 169 (513)
Q Consensus 96 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~~~~~~~~~~---a~~~L~~l~~~~-~~~~~~~~~ 169 (513)
+.+..+++|+.+|.+|..|..+.+... +.+ ......+...+.+=.+.+|+. ++.+|..++... +.-.-....
T Consensus 1048 lt~kewRVReasclAL~dLl~g~~~~~--~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~ 1125 (1702)
T KOG0915|consen 1048 LTSKEWRVREASCLALADLLQGRPFDQ--VKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGK 1125 (1702)
T ss_pred ccchhHHHHHHHHHHHHHHHcCCChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHH
Confidence 788899999999999999997755322 221 123333444444434556544 455555555211 110000001
Q ss_pred CChHHHHHHhc-----CCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhh--------------------hh
Q 010291 170 GGLVPLLKLLD-----SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFI--------------------VQ 224 (513)
Q Consensus 170 ~~i~~L~~ll~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~--------------------~~ 224 (513)
..++.++..+- +.-+++++.++.++..|+.+....-.-.-...|+.|.+.... .+
T Consensus 1126 ~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealD 1205 (1702)
T KOG0915|consen 1126 EALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALD 1205 (1702)
T ss_pred HHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHH
Confidence 12333333332 444788999999999998754331111112222222220000 00
Q ss_pred hhH----------HHHHHHHHHHHHHhhhhhHHHHHHHHHH-hhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhh
Q 010291 225 ATK----------DCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGL 293 (513)
Q Consensus 225 ~~~----------~~~~~~~~~~~~~~~~~~l~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~l 293 (513)
+.+ ..+..+++.+..-.-...+|.+.++++. -.-..+..++..+..|+..-..-..-.....+..++..
T Consensus 1206 t~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g 1285 (1702)
T KOG0915|consen 1206 TLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPG 1285 (1702)
T ss_pred HHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhc
Confidence 000 0011112222222334567777777776 34455777777777776421111112234456778888
Q ss_pred hcCCCcchhhhHHHHHHHhhhccc
Q 010291 294 LGSTNPKQQLDGAVALFKLANKAT 317 (513)
Q Consensus 294 l~~~~~~v~~~a~~~L~~l~~~~~ 317 (513)
+.+.++.+++.-+.++.+++....
T Consensus 1286 ~~dRNesv~kafAsAmG~L~k~Ss 1309 (1702)
T KOG0915|consen 1286 AKDRNESVRKAFASAMGYLAKFSS 1309 (1702)
T ss_pred cccccHHHHHHHHHHHHHHHhcCC
Confidence 888999999999999999987544
No 136
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.43 E-value=0.0048 Score=63.54 Aligned_cols=168 Identities=15% Similarity=0.165 Sum_probs=122.9
Q ss_pred hccCCHHHHHHHHH-HHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChH
Q 010291 12 LEFTDTKVQRAAAG-ALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 90 (513)
Q Consensus 12 L~~~~~~~~~~a~~-~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 90 (513)
+.+.+...|..|++ +|+.++.|++ ... ..+-+++...+.|.++++..-.-|...+...++..-. ++.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-mss------Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----avN 95 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-MSS------LFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AVN 95 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-hHH------HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HHH
Confidence 44556777778876 5556666533 111 2344555555788999998888888888877743222 467
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcC
Q 010291 91 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG 170 (513)
Q Consensus 91 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 170 (513)
.+.+=+.++++.+|-.|.++++.+- .++.. ..+++++.+++.++++.||..|+-++.++-+ -++....+.|
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~--~~el~-----~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g 166 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLR--VKELL-----GNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELG 166 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcC--hHHHH-----HHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhccc
Confidence 7778888899999999999988883 22221 2367889999999999999999999999864 2344455677
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHhcccC
Q 010291 171 GLVPLLKLLDSKNGSLQHNAAFALYGLADN 200 (513)
Q Consensus 171 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 200 (513)
.+..+..++.+.++.+..+|+.++..+...
T Consensus 167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 167 LIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 888889999999999999999999988754
No 137
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.40 E-value=0.00089 Score=51.78 Aligned_cols=80 Identities=16% Similarity=0.287 Sum_probs=58.6
Q ss_pred EEEEe-cCeeehhhHHHHhhcCHHHHHhccCCCCC-CCCCceecCCCCHHHHHHHHHHHhcCccc---------------
Q 010291 348 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYRE-KDARDIEIPNIRWEVFELMMRFIYTGSVD--------------- 410 (513)
Q Consensus 348 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e-~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~--------------- 410 (513)
+.+.. +|..|.+.+.+.. .|..++.|+.+.-.+ .....|++++++..+++.+++|++.-.-.
T Consensus 4 v~L~S~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~ 82 (104)
T smart00512 4 IKLISSDGEVFEVEREVAR-QSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDA 82 (104)
T ss_pred EEEEeCCCCEEEecHHHHH-HHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHH
Confidence 33443 6789999999775 999999999753222 22258999999999999999999853211
Q ss_pred ----cCHHHHHHHHHHHHHhcH
Q 010291 411 ----VTLDIAQDLLRAADQYLL 428 (513)
Q Consensus 411 ----~~~~~~~~ll~~A~~~~~ 428 (513)
++.+.+.+|+.||+++++
T Consensus 83 ~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 83 EFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC
Confidence 344567788888887764
No 138
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.40 E-value=0.00047 Score=62.88 Aligned_cols=89 Identities=18% Similarity=0.274 Sum_probs=75.0
Q ss_pred eeehhhHHHHhhcCHHHHHhccCCCCC-CCCCceecC-CCCHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHhcHHHHH
Q 010291 355 RRFYAHRICLLASSDAFRAMFDGGYRE-KDARDIEIP-NIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLK 432 (513)
Q Consensus 355 ~~~~~h~~il~~~s~~f~~~~~~~~~e-~~~~~i~l~-~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~~l~ 432 (513)
+.|.+.+.+|...=.||+..+.....+ +...+|+|. +.+-.+|+=+++|++.....++.+++..++.-|+|++|++|.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lv 93 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESLV 93 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHHH
Confidence 679999999999999999999652222 222345554 478899999999999988889999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 010291 433 RLCEYTIAQDI 443 (513)
Q Consensus 433 ~~c~~~l~~~~ 443 (513)
+.|-.|+..++
T Consensus 94 e~cl~y~~~~~ 104 (317)
T PF11822_consen 94 EECLQYCHDHM 104 (317)
T ss_pred HHHHHHHHHhH
Confidence 99999996653
No 139
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.39 E-value=0.0014 Score=64.31 Aligned_cols=187 Identities=13% Similarity=0.075 Sum_probs=120.0
Q ss_pred CCCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 010291 1 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 80 (513)
Q Consensus 1 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 80 (513)
+.|++|.|...|++....++.+....++.++...++....--.-.+---|+.+|++-+.++|..|...++.++..
T Consensus 686 i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a----- 760 (975)
T COG5181 686 ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA----- 760 (975)
T ss_pred hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh-----
Confidence 468899999999999999999999999999987776322211222344688899999999999999999999743
Q ss_pred HHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcc
Q 010291 81 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 160 (513)
Q Consensus 81 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 160 (513)
+.-..++..|++-|+..+...+.-..-+++-.+..+-. -.++|.|+.=-..++..++.-.+.+++.+...-
T Consensus 761 --iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyi 831 (975)
T COG5181 761 --IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLKAMCFMFEYI 831 (975)
T ss_pred --cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHHHHHHHHHHH
Confidence 11112344444444444333332222233322211111 135667776666778889988888888776433
Q ss_pred ccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCc
Q 010291 161 HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 201 (513)
Q Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 201 (513)
.+...-.--...+.|-..+.+.|+.-+..|...+.+|+-+.
T Consensus 832 g~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 832 GQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred HHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 22211111123444667777788888888889999888654
No 140
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.0013 Score=64.91 Aligned_cols=186 Identities=18% Similarity=0.217 Sum_probs=129.1
Q ss_pred hHHHHhhccCCHHHHHHHHHHHHHhhccCc-----hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 010291 6 PPLVELLEFTDTKVQRAAAGALRTLAFKND-----ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 80 (513)
Q Consensus 6 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-----~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 80 (513)
...++++++++.++|..|++.+.-.+...+ ++-+.-....+...+.+.+.+.+..+|..|+.+|+.+-.-+++.-
T Consensus 237 ~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i 316 (823)
T KOG2259|consen 237 SRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEII 316 (823)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHH
Confidence 456778888899999999776665543221 111111122346677777777778888888888877755444321
Q ss_pred H--------------------------------------------------HHHhCCChHHHHHhhcCCChHHHHHHHHH
Q 010291 81 K--------------------------------------------------EVLAAGALQPVIGLLSSCCSESQREAALL 110 (513)
Q Consensus 81 ~--------------------------------------------------~~~~~g~i~~L~~ll~~~~~~~~~~a~~~ 110 (513)
. .++..|+-..++.-++++-.+||.+|+..
T Consensus 317 ~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~S 396 (823)
T KOG2259|consen 317 QQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVAS 396 (823)
T ss_pred HHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHH
Confidence 1 12223344566666777778999999999
Q ss_pred HHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHH
Q 010291 111 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNA 190 (513)
Q Consensus 111 L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a 190 (513)
++.|+...|..... .+..|+++++++...++..|..+|..++.+-..+ +.-++.+...|.+.+.++++..
T Consensus 397 l~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~-----eeql~~il~~L~D~s~dvRe~l 466 (823)
T KOG2259|consen 397 LCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIR-----EEQLRQILESLEDRSVDVREAL 466 (823)
T ss_pred HHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHheec-----HHHHHHHHHHHHhcCHHHHHHH
Confidence 99999877765443 5679999999999999999999999998763333 3456678888888888888777
Q ss_pred HHHHHhcccCc
Q 010291 191 AFALYGLADNE 201 (513)
Q Consensus 191 ~~~L~~l~~~~ 201 (513)
-..|.+.-...
T Consensus 467 ~elL~~~~~~d 477 (823)
T KOG2259|consen 467 RELLKNARVSD 477 (823)
T ss_pred HHHHHhcCCCc
Confidence 66666543333
No 141
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.35 E-value=0.00057 Score=42.47 Aligned_cols=39 Identities=31% Similarity=0.516 Sum_probs=35.4
Q ss_pred chhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010291 119 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 157 (513)
Q Consensus 119 ~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 157 (513)
++.+..+.+.|+++.|++++++++++++..++++|+|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346777889999999999999999999999999999986
No 142
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.023 Score=59.49 Aligned_cols=111 Identities=26% Similarity=0.389 Sum_probs=87.6
Q ss_pred CChhHHHHhhc-cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291 3 GGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 81 (513)
Q Consensus 3 g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 81 (513)
|-.+-+..++. ..++.++.-|+..+..... +.+....+...|++..|+.+|. +-|..|+.++..|..|+.. ++.-+
T Consensus 1771 g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLH-S~PS~R~~vL~vLYAL~S~-~~i~k 1847 (2235)
T KOG1789|consen 1771 GNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLH-SQPSMRARVLDVLYALSSN-GQIGK 1847 (2235)
T ss_pred cccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHh-cChHHHHHHHHHHHHHhcC-cHHHH
Confidence 44555666664 3678899999999988876 7889999999998888888886 4578899999999999976 55556
Q ss_pred HHHhCCChHHHHHhh-cCCChHHHHHHHHHHHHhhc
Q 010291 82 EVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAA 116 (513)
Q Consensus 82 ~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~ 116 (513)
...+.|++..+..++ .+..+..+..++..+..+..
T Consensus 1848 eA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1848 EALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 667788877777655 45667888889999998864
No 143
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.29 E-value=0.011 Score=50.90 Aligned_cols=92 Identities=23% Similarity=0.279 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCC-ChHHHHH
Q 010291 16 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG-ALQPVIG 94 (513)
Q Consensus 16 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-~i~~L~~ 94 (513)
+|.+|.+++.+++.++...+...+. .++.+...|.++++.+|+.|+.+|.+|....- +.-.| .+..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~-----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEP-----YLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHh-----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHH
Confidence 5789999999999999754443322 47889999999999999999999999985421 11123 3477888
Q ss_pred hhcCCChHHHHHHHHHHHHhhcC
Q 010291 95 LLSSCCSESQREAALLLGQFAAT 117 (513)
Q Consensus 95 ll~~~~~~~~~~a~~~L~~l~~~ 117 (513)
++.+++++++..|..++..+...
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999855
No 144
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.26 E-value=0.016 Score=51.19 Aligned_cols=234 Identities=20% Similarity=0.234 Sum_probs=141.4
Q ss_pred hhHHHHhhccC--CHHHHHHHHHHHHHhhccCc----------h----------hHHHHHhcCCHHHHHHhhc--CCCHH
Q 010291 5 IPPLVELLEFT--DTKVQRAAAGALRTLAFKND----------E----------NKNQIVECNALPTLILMLR--SEDSA 60 (513)
Q Consensus 5 i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~----------~----------~~~~i~~~g~i~~Lv~lL~--~~~~~ 60 (513)
+..+.+.|... ...-+.+|+..|.++..... + .-.++.+...++.++..|. ++.+-
T Consensus 5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~~Av~~l~~vl~desq~pm 84 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRALFNLRNLLGPAAIKAITKAFIDDSALLKHELAYVLGQMQDEDAVPVLVEVLLDESQEPM 84 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccchhhhhhhhccchhhHHHHHHhcccccchH
Confidence 34555555442 23456677777776654211 0 0112334567888888887 45688
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhh-------HHH-----Hhc
Q 010291 61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK-------VHI-----VQR 128 (513)
Q Consensus 61 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-------~~~-----~~~ 128 (513)
+|..|..+|+.+. . + +.++.+-++.+++..++++.+..++..+-..+.-.. ... ...
T Consensus 85 vRhEAaealga~~-~-~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ 153 (289)
T KOG0567|consen 85 VRHEAAEALGAIG-D-P---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANL 153 (289)
T ss_pred HHHHHHHHHHhhc-c-h---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCcccc
Confidence 8999999999886 3 2 245666677766777788777777766642111000 000 011
Q ss_pred CChHHHHHHhCCC--CHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHH
Q 010291 129 GAVRPLIEMLQSP--DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD 206 (513)
Q Consensus 129 ~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 206 (513)
+-+..+-..+.+. ..--++.+...|+|+.. +..+..+.+-+..++.-.+..++.++++|-.
T Consensus 154 ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s------- 216 (289)
T KOG0567|consen 154 SSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQS------- 216 (289)
T ss_pred ccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccc-------
Confidence 1233333333322 11234555666666421 1235556666666667777778778777653
Q ss_pred HHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH--hhcchhhhHHHHHhhccCCCCcceeeecC
Q 010291 207 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV--AEKGVQRRVALALAHLCSPDDQRTIFIDG 284 (513)
Q Consensus 207 ~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~--~~~~v~~~a~~aL~~l~~~~~~~~~l~~~ 284 (513)
...++.|...|.. .++-||..|+.+|+.++. .
T Consensus 217 ------------------------------------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e 250 (289)
T KOG0567|consen 217 ------------------------------------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------E 250 (289)
T ss_pred ------------------------------------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------H
Confidence 2246667777766 567789999999997763 5
Q ss_pred CchHHHHhhhcCCCcchhhhHHHHHHHh
Q 010291 285 GGLELLLGLLGSTNPKQQLDGAVALFKL 312 (513)
Q Consensus 285 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l 312 (513)
..++.|.+.+.+..+-+++.+..+|-.+
T Consensus 251 ~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 251 DCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 5788899999998888888777766544
No 145
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.26 E-value=0.0066 Score=59.23 Aligned_cols=299 Identities=12% Similarity=0.023 Sum_probs=164.8
Q ss_pred hccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHH
Q 010291 12 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 91 (513)
Q Consensus 12 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 91 (513)
++++++.-+..|+.+++....+..+....-+-...+|.+...+.++.--++..++||++.++.. ....+-..|.++.
T Consensus 375 i~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~---va~~i~p~~Hl~~ 451 (858)
T COG5215 375 IRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH---VAMIISPCGHLVL 451 (858)
T ss_pred ccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH---HHHhcCccccccH
Confidence 4567888899999999999987555444444456788888888888888999999999999844 2233333454544
Q ss_pred HHHhhc---CCChHHHHHHHHHHHHhhcCCchhhHH---HHh---cCChHHHHHHhC--CCCHHHHHHHHHHHHHHhhcc
Q 010291 92 VIGLLS---SCCSESQREAALLLGQFAATDSDCKVH---IVQ---RGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQDM 160 (513)
Q Consensus 92 L~~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~~---~~~i~~L~~~l~--~~~~~~~~~a~~~L~~l~~~~ 160 (513)
.+.... .+.+.+..++.|...|+..+-++.... ++. ..++..|+..-. .++...|..+..+|+.|..-.
T Consensus 452 ~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~ 531 (858)
T COG5215 452 EVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILIC 531 (858)
T ss_pred HHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhc
Confidence 444322 256778889999999998654443211 111 112223332221 235567777777777776433
Q ss_pred ccchhhHhcCC-----------hHHHHHHhcCCC----HHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhh--
Q 010291 161 HNQAGIAHNGG-----------LVPLLKLLDSKN----GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIV-- 223 (513)
Q Consensus 161 ~~~~~~~~~~~-----------i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~-- 223 (513)
+..-.-...|. +..+-+.+...| .+++.+.+..|..+.+....--+-++...+..+++...+.
T Consensus 532 ~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~ 611 (858)
T COG5215 532 PDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKP 611 (858)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCC
Confidence 33211111111 222222222222 4556666666665543111100000000111111111111
Q ss_pred ----hhhH---HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcC
Q 010291 224 ----QATK---DCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS 296 (513)
Q Consensus 224 ----~~~~---~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~ 296 (513)
+..- .....++..-.+.+-..++|-|..-|+..+..+...|.+.++.|+..-..............|++.+++
T Consensus 612 t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss 691 (858)
T COG5215 612 TTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSS 691 (858)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC
Confidence 0000 111223333445566778999999998899999999999999997643322223334456778888876
Q ss_pred --CCcchhhhHHHHHHHhh
Q 010291 297 --TNPKQQLDGAVALFKLA 313 (513)
Q Consensus 297 --~~~~v~~~a~~~L~~l~ 313 (513)
.+-+++-....+...++
T Consensus 692 ~~~~R~lKPaiLSvFgDIA 710 (858)
T COG5215 692 EATHRDLKPAILSVFGDIA 710 (858)
T ss_pred hhhccccchHHHHHHHHHH
Confidence 33344444444444444
No 146
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.22 E-value=0.0064 Score=49.90 Aligned_cols=122 Identities=13% Similarity=0.164 Sum_probs=96.6
Q ss_pred HHHHHhcCCHHHHHHhhcCCC------HHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCC--ChHHHHHHHH
Q 010291 38 KNQIVECNALPTLILMLRSED------SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAAL 109 (513)
Q Consensus 38 ~~~i~~~g~i~~Lv~lL~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~ 109 (513)
...+++.||+..|+++++++. .+....++.++..|-.+. ...........+..++.+++.. +..+.+.|..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 456788899999999999654 367777888888877542 3234555556677788887764 5789999999
Q ss_pred HHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcc
Q 010291 110 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 160 (513)
Q Consensus 110 ~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 160 (513)
.|.++...++.....+.+.=-++.|+..|+.++++++.++...+..|....
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 999999887776777777778999999999999999999999998887443
No 147
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.1 Score=55.03 Aligned_cols=300 Identities=14% Similarity=0.109 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHh----cCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHH
Q 010291 19 VQRAAAGALRTLAFKNDENKNQIVE----CNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 93 (513)
Q Consensus 19 ~~~~a~~~L~~l~~~~~~~~~~i~~----~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 93 (513)
-...++.+|.|+...+|+....+.. .|..+.+..+|. ..++.++..|+..+..++.+ .++...+...|.+..|+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHHHH
Confidence 4567899999999888876554433 366777778887 56788999999999888766 66778889999999999
Q ss_pred HhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHhhcccc--chhhHhcC
Q 010291 94 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHN--QAGIAHNG 170 (513)
Q Consensus 94 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~ 170 (513)
.+|. +-+..++.++.+|..|++. ++......+.|++..+.+++.. .++..+..++..++.|..++-. |-.+--..
T Consensus 1820 ~lLH-S~PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~k 1897 (2235)
T KOG1789|consen 1820 TLLH-SQPSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIK 1897 (2235)
T ss_pred HHHh-cChHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHH
Confidence 8885 4677899999999999855 5656667777888777777764 5788999999999999876532 21111112
Q ss_pred ChHH-HHHHhcCC-------------CHH------HHHHHHHHHHhcccCc--ch-HHHHHhhcCcccccchhhhhhhhH
Q 010291 171 GLVP-LLKLLDSK-------------NGS------LQHNAAFALYGLADNE--DN-VADFIRVGGVQKLQDGEFIVQATK 227 (513)
Q Consensus 171 ~i~~-L~~ll~~~-------------~~~------~~~~a~~~L~~l~~~~--~~-~~~~~~~g~i~~L~~~~~~~~~~~ 227 (513)
.++. ++..++++ +++ .+...-..+..++..- +. ....++.+.-+. ........+
T Consensus 1898 FLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEq---sAg~~Ea~~ 1974 (2235)
T KOG1789|consen 1898 FLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQ---SAGTSEADK 1974 (2235)
T ss_pred hchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchh---hcchhhhcc
Confidence 2222 33333322 111 1111112222222100 00 000000000000 000111223
Q ss_pred HHHHHHHHHHHHH------------hhhhhHHHHHHHHHHhhcchhh--hHHHHHhhccC-CCCcceeeecCCchHHHHh
Q 010291 228 DCVAKTLKRLEEK------------IHGRVLNHLLYLMRVAEKGVQR--RVALALAHLCS-PDDQRTIFIDGGGLELLLG 292 (513)
Q Consensus 228 ~~~~~~~~~~~~~------------~~~~~l~~Lv~lL~~~~~~v~~--~a~~aL~~l~~-~~~~~~~l~~~~~i~~L~~ 292 (513)
.|..+..-....+ +-.+.+++++++|..++++-.. ....++..|.+ .+.....+-..|.+|+++.
T Consensus 1975 E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~ 2054 (2235)
T KOG1789|consen 1975 ECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCT 2054 (2235)
T ss_pred CcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHH
Confidence 3333322111111 2234667777777776554322 22233444433 4555667778899999999
Q ss_pred hhcCCCcchhhhHHHHHHHhhhccccccccCC
Q 010291 293 LLGSTNPKQQLDGAVALFKLANKATTLSSVDA 324 (513)
Q Consensus 293 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~i~~ 324 (513)
.+...+..+-..|..+|-.|+.+..+...+.+
T Consensus 2055 Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~ 2086 (2235)
T KOG1789|consen 2055 AMCLQNTSAPRSAIRVLHELSENQFCCDAMAQ 2086 (2235)
T ss_pred HHHhcCCcCcHHHHHHHHHHhhccHHHHHHhc
Confidence 99877766667888888888877665555544
No 148
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.019 Score=57.49 Aligned_cols=259 Identities=16% Similarity=0.180 Sum_probs=157.1
Q ss_pred HHHhhccCC--HHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHh
Q 010291 8 LVELLEFTD--TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 85 (513)
Q Consensus 8 Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 85 (513)
+-.+|-+++ +-++..|+-+|..+-+.+|+.. ...+..+.++.+|.+.+..+...+...+-.++..+++...--+
T Consensus 151 I~KlLvS~~~~~~vkqkaALclL~L~r~spDl~---~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~- 226 (938)
T KOG1077|consen 151 IPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV---NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCL- 226 (938)
T ss_pred hHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc---ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhH-
Confidence 335565543 6788899999999988666532 2234578899999988888888888888888887765422111
Q ss_pred CCChHHHHHhhc-------------CCChHHHHHHHHHHHHhhcC-CchhhHHHHhcCChHHHHHHhCCC----C---HH
Q 010291 86 AGALQPVIGLLS-------------SCCSESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEMLQSP----D---VQ 144 (513)
Q Consensus 86 ~g~i~~L~~ll~-------------~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~----~---~~ 144 (513)
.-.+..|..+.. -+.|.+....+++|.+.-.. ++..+..+.+ +++.++...+++ + ..
T Consensus 227 ~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~n 304 (938)
T KOG1077|consen 227 PLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSN 304 (938)
T ss_pred HHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhh
Confidence 001222222221 14578888888888887422 2233333332 445555544432 1 11
Q ss_pred HHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhh
Q 010291 145 LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ 224 (513)
Q Consensus 145 ~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~ 224 (513)
.+...+.-.-+++.+-+.-..+. ...+..|-+++.+....++.-|+..++.|+........+-
T Consensus 305 a~naVLFeaI~l~~h~D~e~~ll-~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK---------------- 367 (938)
T KOG1077|consen 305 AKNAVLFEAISLAIHLDSEPELL-SRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVK---------------- 367 (938)
T ss_pred hHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHH----------------
Confidence 22333333444443333222222 1355667777777777888888887777776543322221
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHH-HhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhh
Q 010291 225 ATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-VAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQL 303 (513)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 303 (513)
. -...++..|+ ..|..+|..|+..|..+|..++.+. .+..|++.+.+.++.+|+
T Consensus 368 ------------------~-h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~------IV~elLqYL~tAd~sire 422 (938)
T KOG1077|consen 368 ------------------K-HQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQ------IVAELLQYLETADYSIRE 422 (938)
T ss_pred ------------------H-HHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHH------HHHHHHHHHhhcchHHHH
Confidence 1 1455677788 5889999999999999997666543 356678888878888887
Q ss_pred hHHHHHHHhhh
Q 010291 304 DGAVALFKLAN 314 (513)
Q Consensus 304 ~a~~~L~~l~~ 314 (513)
+.+.-+.-|++
T Consensus 423 eivlKvAILaE 433 (938)
T KOG1077|consen 423 EIVLKVAILAE 433 (938)
T ss_pred HHHHHHHHHHH
Confidence 76554444444
No 149
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.18 E-value=0.013 Score=53.01 Aligned_cols=226 Identities=14% Similarity=0.119 Sum_probs=135.0
Q ss_pred hccCCHHHHHHHHHHHHHhhccCchhHHHHHhc-CCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChhHHHHHHh-CC
Q 010291 12 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AG 87 (513)
Q Consensus 12 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~Lv~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g 87 (513)
++.-++-.+.-|.+++.++.. .++.|..+..+ ..-..++.+++. ++..++-..+.+++.++.+ +.+.+.+-. ..
T Consensus 158 ~Q~i~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K~~d 235 (432)
T COG5231 158 SQLIDFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHHHHH
Confidence 344566678889999999987 56666655443 344567777774 4678999999999999976 444333322 24
Q ss_pred ChHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCch-hhHHHHhcCChHHHHHHhCC---CCHHHHHHHHHHHHHHhhc---
Q 010291 88 ALQPVIGLLSSC-CSESQREAALLLGQFAATDSD-CKVHIVQRGAVRPLIEMLQS---PDVQLREMSAFALGRLAQD--- 159 (513)
Q Consensus 88 ~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~~l~~---~~~~~~~~a~~~L~~l~~~--- 159 (513)
.+..++.+.+.. ...+.+-++.++.|++...|. ....+.-.|-+.+-++.|.+ .|++++...-..=..|..+
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 566666666543 467788899999999975442 22333444545555655543 3666553332222222111
Q ss_pred -------------------cccc---------hhhHhc--CChHHHHHHhcCCCHH-HHHHHHHHHHhccc-CcchHHHH
Q 010291 160 -------------------MHNQ---------AGIAHN--GGLVPLLKLLDSKNGS-LQHNAAFALYGLAD-NEDNVADF 207 (513)
Q Consensus 160 -------------------~~~~---------~~~~~~--~~i~~L~~ll~~~~~~-~~~~a~~~L~~l~~-~~~~~~~~ 207 (513)
+..+ ..+.+. ..+..|.++++..++. ....|+.-+..+.+ .|+....+
T Consensus 316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl 395 (432)
T COG5231 316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVL 395 (432)
T ss_pred hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHH
Confidence 0000 111111 1244466666665544 33445555555544 34333322
Q ss_pred HhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhcc
Q 010291 208 IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC 272 (513)
Q Consensus 208 ~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~ 272 (513)
...|+-..++.++.+++++|+..|+.++..+.
T Consensus 396 ---------------------------------~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 396 ---------------------------------SKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred ---------------------------------HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 34556778899999999999999999987664
No 150
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0036 Score=51.81 Aligned_cols=90 Identities=21% Similarity=0.261 Sum_probs=70.4
Q ss_pred cCeeehhhHHHHhhcCHHHHHhccCC-CCCCCCCceecCCCCHHHHHHHHHHHhcCccc---------------------
Q 010291 353 EGRRFYAHRICLLASSDAFRAMFDGG-YREKDARDIEIPNIRWEVFELMMRFIYTGSVD--------------------- 410 (513)
Q Consensus 353 ~~~~~~~h~~il~~~s~~f~~~~~~~-~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~--------------------- 410 (513)
+|+.|.+-..+.. .|..+++++... ..... ..|+|+.++...|..+++|+|.-.-+
T Consensus 13 DG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~-~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~ 90 (162)
T KOG1724|consen 13 DGEIFEVEEEVAR-QSQTISAHMIEDGCADEN-DPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDA 90 (162)
T ss_pred CCceeehhHHHHH-HhHHHHHHHHHcCCCccC-CccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHH
Confidence 6778888877655 888888888532 22222 58999999999999999999973311
Q ss_pred ----cCHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcCC
Q 010291 411 ----VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDIS 444 (513)
Q Consensus 411 ----~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~ 444 (513)
+..+++.+++.+|+||++++|...|.+.+...+.
T Consensus 91 ~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mik 128 (162)
T KOG1724|consen 91 EFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIK 128 (162)
T ss_pred HHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHc
Confidence 2345789999999999999999999998887763
No 151
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.12 E-value=0.013 Score=52.08 Aligned_cols=193 Identities=12% Similarity=0.116 Sum_probs=134.2
Q ss_pred CCHHHHHHHHHHHHHhhccCchhHHHHHh-cCCHHHHHH-------hhcCCC-----HHHHHHHHHHHHHhhcCChhHHH
Q 010291 15 TDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLIL-------MLRSED-----SAIHYEAVGVIGNLVHSSPNIKK 81 (513)
Q Consensus 15 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~-------lL~~~~-----~~v~~~a~~~L~~l~~~~~~~~~ 81 (513)
-+++.|+.|+.-|+.--+..++....+-. .|.+..|++ .+..++ ..-...|+..|..+|.+ ++.|.
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~ 85 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRM 85 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHH
Confidence 36788999988888776655565555554 466666654 222221 13344566666677765 88899
Q ss_pred HHHhCCChHHHHHhhcCCC-----hHHHHHHHHHHHHhhcC-CchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 010291 82 EVLAAGALQPVIGLLSSCC-----SESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 155 (513)
Q Consensus 82 ~~~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~ 155 (513)
.+++.++.-.|..+|+..+ +.+|-.+.++++.+... +++....+.+.+++|..++.++.++.-.+..|..++..
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999999988988887532 46788888999998843 45666677889999999999999988888999999999
Q ss_pred HhhccccchhhHh--------cCChHH-HHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHH
Q 010291 156 LAQDMHNQAGIAH--------NGGLVP-LLKLLDSKNGSLQHNAAFALYGLADNEDNVADFI 208 (513)
Q Consensus 156 l~~~~~~~~~~~~--------~~~i~~-L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 208 (513)
+-.++.+-..+.. ...+.. +..+...+++.+..+.+++-..|+.++..+..+.
T Consensus 166 IL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~ 227 (262)
T PF04078_consen 166 ILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALR 227 (262)
T ss_dssp HHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHH
T ss_pred HHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHH
Confidence 8877665433221 122333 3345567889999999999999999998776665
No 152
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.08 E-value=0.014 Score=60.31 Aligned_cols=140 Identities=18% Similarity=0.183 Sum_probs=105.0
Q ss_pred hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 84 (513)
Q Consensus 5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 84 (513)
.+.+++...+.|.++++-.-..|...++.+|+.... .+..+..=++++|+.+|-.|+++++.+=. ++.-
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----avNti~kDl~d~N~~iR~~AlR~ls~l~~--~el~---- 125 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AVNTIQKDLQDPNEEIRGFALRTLSLLRV--KELL---- 125 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HHHHHHhhccCCCHHHHHHHHHHHHhcCh--HHHH----
Confidence 344555555566666666666666666655522221 35667777789999999999999988842 2221
Q ss_pred hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291 85 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 159 (513)
Q Consensus 85 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~ 159 (513)
..+++++.++++++++.||+.|+.++.++-+.++. ...+.|.+..+..++.+.+|.+..+|..+|..+...
T Consensus 126 -~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 126 -GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred -HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 23688999999999999999999999999866543 455678888899999999999999999999998653
No 153
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.07 E-value=0.043 Score=51.92 Aligned_cols=200 Identities=14% Similarity=0.129 Sum_probs=143.8
Q ss_pred CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHH-----HHHhc--CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 010291 3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN-----QIVEC--NALPTLILMLRSEDSAIHYEAVGVIGNLVHS 75 (513)
Q Consensus 3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~-----~i~~~--g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~ 75 (513)
|.+..|+..|..-+-+.|..++.+..++.+...+.+. .+... .++..|+.. .+++++-..+-..|+..+..
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~g--y~~~dial~~g~mlRec~k~ 153 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRG--YENPDIALNCGDMLRECIKH 153 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHG--GGSTTTHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHH--hcCccccchHHHHHHHHHhh
Confidence 4567788888888888999999999999876544432 22221 222333322 34677777777788888876
Q ss_pred ChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHh---cCChHHHHHHhCCCCHHHHHHHHHH
Q 010291 76 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ---RGAVRPLIEMLQSPDVQLREMSAFA 152 (513)
Q Consensus 76 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~~L~~~l~~~~~~~~~~a~~~ 152 (513)
+...+.+.....+..+.+.+..++.++...|..++..+-............ ..+......++.+++--++..++..
T Consensus 154 -e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 154 -ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp -HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred -HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 666778888888889999999999999999999999977665555444443 2356677888999999999999999
Q ss_pred HHHHhhccccchh----hHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHH
Q 010291 153 LGRLAQDMHNQAG----IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVA 205 (513)
Q Consensus 153 L~~l~~~~~~~~~----~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 205 (513)
|+.+-.+..+... +.+...+..++.+|++++..++-.|..++--+..++..-.
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~ 289 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPP 289 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BH
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCCh
Confidence 9999988887543 3345667789999999999999999999888877665433
No 154
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.05 E-value=0.0072 Score=64.05 Aligned_cols=232 Identities=17% Similarity=0.070 Sum_probs=142.2
Q ss_pred CChhHHHHhhccCCHHHHHHHHHHHHHhhcc---CchhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChh
Q 010291 3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFK---NDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN 78 (513)
Q Consensus 3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~ 78 (513)
.++|-++.++.++..++|..|+.+|..+... -+..-..+..+=+.|.|-.++.+ ....+|..-+.+|..||...-.
T Consensus 462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r 541 (1431)
T KOG1240|consen 462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR 541 (1431)
T ss_pred hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH
Confidence 4688999999999999999999999888642 11112223333356677777776 4556666666677766632111
Q ss_pred H---HHHHHhCC-------------------------ChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCC
Q 010291 79 I---KKEVLAAG-------------------------ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA 130 (513)
Q Consensus 79 ~---~~~~~~~g-------------------------~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 130 (513)
. -+.+.+.| +=+....++.++.+-|++..+..|.-||...... -.+.=+
T Consensus 542 Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~---ksND~i 618 (1431)
T KOG1240|consen 542 FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE---KSNDVI 618 (1431)
T ss_pred HHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc---ccccch
Confidence 1 01111111 1133344555566666666666666666221110 011225
Q ss_pred hHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhh
Q 010291 131 VRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV 210 (513)
Q Consensus 131 i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 210 (513)
++.|+..|++.|..+|..-...+..++.-- ...-+++..++.|.+-|.++.+-+...|++++..|+...--++..
T Consensus 619 LshLiTfLNDkDw~LR~aFfdsI~gvsi~V--G~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~--- 693 (1431)
T KOG1240|consen 619 LSHLITFLNDKDWRLRGAFFDSIVGVSIFV--GWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPA--- 693 (1431)
T ss_pred HHHHHHHhcCccHHHHHHHHhhccceEEEE--eeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHH---
Confidence 778888888888888866555555544211 122245566777888889999999999999999988754322211
Q ss_pred cCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccC
Q 010291 211 GGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 273 (513)
Q Consensus 211 g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 273 (513)
-.+++.....+|-+++.-+|..++..|...+.
T Consensus 694 -------------------------------v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 694 -------------------------------VKDILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred -------------------------------HHHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 12245556677777888888888888877654
No 155
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.05 E-value=0.0085 Score=53.28 Aligned_cols=176 Identities=15% Similarity=0.170 Sum_probs=117.3
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCC-----CHHHHHHHHHHHHHhhcC-ChhHHHHHHhCCChHHHH
Q 010291 20 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-----DSAIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQPVI 93 (513)
Q Consensus 20 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~ 93 (513)
..+|+..+..++. +++.+..+.+..+.-.|.+.|+.. -..+|..+++.++.+... +++.-..+.+.+++|..+
T Consensus 67 VcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL 145 (262)
T PF04078_consen 67 VCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL 145 (262)
T ss_dssp HHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence 4456677777787 899999999999888888888743 257899999999999973 345667777889999999
Q ss_pred HhhcCCChHHHHHHHHHHHHhhcCCchhh------HHHH-hcCChHHHH-HHhCCCCHHHHHHHHHHHHHHhhccccchh
Q 010291 94 GLLSSCCSESQREAALLLGQFAATDSDCK------VHIV-QRGAVRPLI-EMLQSPDVQLREMSAFALGRLAQDMHNQAG 165 (513)
Q Consensus 94 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~------~~~~-~~~~i~~L~-~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~ 165 (513)
+.++.++.-.+..|..++..+..++.+.. +.+. -..++..++ .+.+++++.+.++.+++-..|+.++..+..
T Consensus 146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~a 225 (262)
T PF04078_consen 146 RIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREA 225 (262)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHH
Confidence 99999888888889999998875543221 1111 112333333 344567999999999999999998888776
Q ss_pred hHhcCChHHH----HHHhcCCCHHHHHHHHHHHHhc
Q 010291 166 IAHNGGLVPL----LKLLDSKNGSLQHNAAFALYGL 197 (513)
Q Consensus 166 ~~~~~~i~~L----~~ll~~~~~~~~~~a~~~L~~l 197 (513)
+.. ...+.| ...+-.+|+.++..-...+.|+
T Consensus 226 L~~-~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 226 LRQ-CLPDQLRDGTFSNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp HHH-HS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred HHH-hCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 653 111111 1112233566666555555554
No 156
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.04 E-value=0.0014 Score=50.78 Aligned_cols=71 Identities=20% Similarity=0.309 Sum_probs=61.0
Q ss_pred hhHHHHhh-ccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 010291 5 IPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 75 (513)
Q Consensus 5 i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~ 75 (513)
+..|+++| .+.++.+..-||.-|+.+++..|..+..+-+.|+-..+++++.++|++|+..|+.++..+..+
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 56788888 456788888999999999999999999888899999999999999999999999999887643
No 157
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.031 Score=58.91 Aligned_cols=255 Identities=17% Similarity=0.173 Sum_probs=151.9
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCchhh
Q 010291 44 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCK 122 (513)
Q Consensus 44 ~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~ 122 (513)
++++..|++.|++.+..+|..|+..++.++...|.. ....++..++.++.-. ++..-..++.+|..++...--..
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~----Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE----LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH----HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 357888888889999999999999999999876632 1123566666655432 34445588999999985432222
Q ss_pred HHHHhcCChHHHHHHhCC--------CCHHHHHHHHHHHHHHhhccccc--hhhHhcCChHHHHHHhcCCCHHHHHHHHH
Q 010291 123 VHIVQRGAVRPLIEMLQS--------PDVQLREMSAFALGRLAQDMHNQ--AGIAHNGGLVPLLKLLDSKNGSLQHNAAF 192 (513)
Q Consensus 123 ~~~~~~~~i~~L~~~l~~--------~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~i~~L~~ll~~~~~~~~~~a~~ 192 (513)
..+. .++|.+++-+.- ....+|..|+.+++.+++..... +.+...=.-..|...+-+.+-..++.|..
T Consensus 416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 2222 356666665542 24568999999999998654433 22222111112344455667788888888
Q ss_pred HHHhcccCcchHHHHHhhcCcccccc-hhhhhhhhHHHHHHHHHHHHHH--hhhhhHHHHHHH-HHHhhcchhhhHHHHH
Q 010291 193 ALYGLADNEDNVADFIRVGGVQKLQD-GEFIVQATKDCVAKTLKRLEEK--IHGRVLNHLLYL-MRVAEKGVQRRVALAL 268 (513)
Q Consensus 193 ~L~~l~~~~~~~~~~~~~g~i~~L~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~Lv~l-L~~~~~~v~~~a~~aL 268 (513)
++.....-..+. .-|++.+.. ..++......|...-...+... +...++.+|+.- +.+.|..+|+.++++|
T Consensus 494 AlqE~VGR~~n~-----p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL 568 (1133)
T KOG1943|consen 494 ALQENVGRQGNF-----PHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYAL 568 (1133)
T ss_pred HHHHHhccCCCC-----CCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 887655322221 012222222 2224444455554433222221 233455555554 6667899999999999
Q ss_pred hhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHh
Q 010291 269 AHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 312 (513)
Q Consensus 269 ~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 312 (513)
.+|+.... .....+.++.++....+.+...+.-+..+...+
T Consensus 569 ~~Ls~~~p---k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev 609 (1133)
T KOG1943|consen 569 HKLSLTEP---KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEV 609 (1133)
T ss_pred HHHHHhhH---HhhcccchhhhhhhhcCCChHHhhhhHHHHHHH
Confidence 99875422 223345677888777777777765544444443
No 158
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.97 E-value=0.0037 Score=47.24 Aligned_cols=92 Identities=15% Similarity=0.087 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCC
Q 010291 104 QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 183 (513)
Q Consensus 104 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~ 183 (513)
|..++.+|...+..-+.... -.-..++++++..+.+++..+|..|+.+|.|++........-.-...++.|.+++.+.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~-~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDIS-KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHH-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 45566677766644333322 22235889999999999999999999999999865433222222456777889999999
Q ss_pred HHHHHHHHHHHHhc
Q 010291 184 GSLQHNAAFALYGL 197 (513)
Q Consensus 184 ~~~~~~a~~~L~~l 197 (513)
+.++..| ..|-++
T Consensus 82 ~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 82 ENVRSAA-ELLDRL 94 (97)
T ss_pred hhHHHHH-HHHHHH
Confidence 9986654 555443
No 159
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.96 E-value=0.0084 Score=45.31 Aligned_cols=90 Identities=17% Similarity=0.261 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHh--CCChHHHHHhhc
Q 010291 20 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLS 97 (513)
Q Consensus 20 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~ 97 (513)
|..++.+|...+.+-+....... ..++++++.++.+++..||..|+.+|.+++... +..+.. ..+.+.|.+++.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~---~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVA---RGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHc
Confidence 56777788877765443322222 347899999999999999999999999998543 333332 357888888898
Q ss_pred CCChHHHHHHHHHHHHh
Q 010291 98 SCCSESQREAALLLGQF 114 (513)
Q Consensus 98 ~~~~~~~~~a~~~L~~l 114 (513)
+.+++|+..| ..|-++
T Consensus 79 D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRL 94 (97)
T ss_pred CCchhHHHHH-HHHHHH
Confidence 9999888766 444443
No 160
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.92 E-value=0.26 Score=43.33 Aligned_cols=190 Identities=13% Similarity=0.125 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHhhccCchhHHHHHh-cCCHHHHHH-h------hc----CC-CHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291 17 TKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLIL-M------LR----SE-DSAIHYEAVGVIGNLVHSSPNIKKEV 83 (513)
Q Consensus 17 ~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~-l------L~----~~-~~~v~~~a~~~L~~l~~~~~~~~~~~ 83 (513)
+..++.|+.-|...-+..++....+.. .|....+++ . |. ++ .+.-...|+..|..++.+ ++.|..+
T Consensus 38 ~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvASH-pdTr~~F 116 (293)
T KOG3036|consen 38 PPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVASH-PDTRRAF 116 (293)
T ss_pred CchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhcC-cchHHHH
Confidence 445666666666655544454444433 354444443 1 11 11 223344555555556655 8889999
Q ss_pred HhCCChHHHHHhhcC-----CChHHHHHHHHHHHHhhcCCc-hhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010291 84 LAAGALQPVIGLLSS-----CCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 157 (513)
Q Consensus 84 ~~~g~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 157 (513)
++..+.-.+-.+|.. +.+-+|-.+.++++.+...++ +....+...+++|..++.+..++...+..|..++..+-
T Consensus 117 L~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 117 LRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKIL 196 (293)
T ss_pred HHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 999888888888764 345788889999999985544 45556778999999999999999999999999999988
Q ss_pred hccccchhhHh--------cCChHH-HHHHhcCCCHHHHHHHHHHHHhcccCcchHHHH
Q 010291 158 QDMHNQAGIAH--------NGGLVP-LLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 207 (513)
Q Consensus 158 ~~~~~~~~~~~--------~~~i~~-L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 207 (513)
.++.+-..+.. ...+.. +.++.+.++.....+++++..+|+.++..+..+
T Consensus 197 ldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL 255 (293)
T KOG3036|consen 197 LDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAAL 255 (293)
T ss_pred hccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 77766433322 112223 445667788999999999999999988665544
No 161
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.91 E-value=0.0023 Score=60.98 Aligned_cols=186 Identities=16% Similarity=0.117 Sum_probs=112.4
Q ss_pred CCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhc----CCchh---hHHHHhcC
Q 010291 57 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA----TDSDC---KVHIVQRG 129 (513)
Q Consensus 57 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~----~~~~~---~~~~~~~~ 129 (513)
.+.-++..|+++++-+.-+.........-......+...+.+.....+.++.|+++|++. +-|.. ...+.. -
T Consensus 403 ~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ 481 (728)
T KOG4535|consen 403 KNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-L 481 (728)
T ss_pred HHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-H
Confidence 344567777777776666533333334444566667777777778899999999999972 22321 111111 1
Q ss_pred ChHHHHHHhC---CCCHHHHHHHHHHHHHHhhccccch----hhHhcCChHHH-HHHhcCCCHHHHHHHHHHHHhcccCc
Q 010291 130 AVRPLIEMLQ---SPDVQLREMSAFALGRLAQDMHNQA----GIAHNGGLVPL-LKLLDSKNGSLQHNAAFALYGLADNE 201 (513)
Q Consensus 130 ~i~~L~~~l~---~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~i~~L-~~ll~~~~~~~~~~a~~~L~~l~~~~ 201 (513)
.+..++..-. ..+.+++.++.++|.|+..--+.-. .....+.+..+ ....-.....++.+++.+++||-.++
T Consensus 482 ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~ 561 (728)
T KOG4535|consen 482 LLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNP 561 (728)
T ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence 2333333222 2466899999999999974222100 01112222222 22233456789999999999999877
Q ss_pred chHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-hhcchhhhHHHHHhhccCC
Q 010291 202 DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSP 274 (513)
Q Consensus 202 ~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~ 274 (513)
...-+- .-+...+++.|..++.+ .+..+|.+|+.+|..-...
T Consensus 562 a~~lq~-------------------------------~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 562 ALPLQT-------------------------------APWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred cccccC-------------------------------CCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 431100 00233467788888877 7899999999999877654
No 162
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.78 E-value=0.0038 Score=59.52 Aligned_cols=267 Identities=18% Similarity=0.165 Sum_probs=133.0
Q ss_pred ccCCHHHHHHHHHHHHHhhcc-----CchhHHHHHhcCCHHH------HHHhhc-CCCHHHHHHHHHHHHHhhcCChhHH
Q 010291 13 EFTDTKVQRAAAGALRTLAFK-----NDENKNQIVECNALPT------LILMLR-SEDSAIHYEAVGVIGNLVHSSPNIK 80 (513)
Q Consensus 13 ~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i~~------Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~ 80 (513)
....+.++..+++++..+..+ .|+..+.-...|-.-. .-.... +..+..+..++.++.++.......
T Consensus 305 ~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~- 383 (728)
T KOG4535|consen 305 GEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSN- 383 (728)
T ss_pred CCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcC-
Confidence 345688888888888777542 2222221111111110 111111 223456667777777775332111
Q ss_pred HHHHhCCChHHHHHhhc-CCC---hHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010291 81 KEVLAAGALQPVIGLLS-SCC---SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 156 (513)
Q Consensus 81 ~~~~~~g~i~~L~~ll~-~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l 156 (513)
...|--+...-++. ..| .-++..|.+++.-+.-+............+...+...+.+..-..++.+.|+++|+
T Consensus 384 ---lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnI 460 (728)
T KOG4535|consen 384 ---LPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNI 460 (728)
T ss_pred ---CCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhh
Confidence 01111111222222 222 22445555555555434333233333445666677777777778899999999999
Q ss_pred hhcc----cc-chhhHh-cC-ChHHHHHHh---cCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhh
Q 010291 157 AQDM----HN-QAGIAH-NG-GLVPLLKLL---DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQAT 226 (513)
Q Consensus 157 ~~~~----~~-~~~~~~-~~-~i~~L~~ll---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~ 226 (513)
+..- ++ +..-.. .| .+..++... ...+.+++.++.++|+|+..--+. +.+.+
T Consensus 461 TdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~---i~~~~--------------- 522 (728)
T KOG4535|consen 461 TDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQP---IEKPT--------------- 522 (728)
T ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHH---hhhcc---------------
Confidence 8421 11 111100 01 111222222 123467888888888887641110 00000
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHH-HHHHHhhcchhhhHHHHHhhccCCCCcc--eeeecCCchHHHHhhhcC-CCcchh
Q 010291 227 KDCVAKTLKRLEEKIHGRVLNHLL-YLMRVAEKGVQRRVALALAHLCSPDDQR--TIFIDGGGLELLLGLLGS-TNPKQQ 302 (513)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~Lv-~lL~~~~~~v~~~a~~aL~~l~~~~~~~--~~l~~~~~i~~L~~ll~~-~~~~v~ 302 (513)
.. +..+. .+..+. ...-.....||.++|.+++||..++... ..-....+.+.|..++.+ .+-.+|
T Consensus 523 -------~~---e~~~~-~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVR 591 (728)
T KOG4535|consen 523 -------FA---EIIEE-SIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVR 591 (728)
T ss_pred -------HH---HHHHH-HHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEe
Confidence 00 00011 111111 1222356789999999999999877642 222223345777777765 888999
Q ss_pred hhHHHHHHHh
Q 010291 303 LDGAVALFKL 312 (513)
Q Consensus 303 ~~a~~~L~~l 312 (513)
..|+.+|..-
T Consensus 592 i~AA~aL~vp 601 (728)
T KOG4535|consen 592 IRAAAALSVP 601 (728)
T ss_pred ehhhhhhcCC
Confidence 9998877653
No 163
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.78 E-value=0.0052 Score=42.16 Aligned_cols=51 Identities=18% Similarity=0.354 Sum_probs=41.8
Q ss_pred cCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhc
Q 010291 353 EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT 406 (513)
Q Consensus 353 ~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~ 406 (513)
+|+.|.+.+.+.. .|+.++.|+.+...+.. .|++++++.+.++.+++|++.
T Consensus 9 Dg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 9 DGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp TSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred CCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHHh
Confidence 6789999999777 99999999975432222 899999999999999999974
No 164
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.74 E-value=0.014 Score=55.18 Aligned_cols=205 Identities=13% Similarity=0.120 Sum_probs=148.0
Q ss_pred HHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhH-----HHHh--cCChHHHHHHhCCCCHHHHHHHHHHH
Q 010291 81 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV-----HIVQ--RGAVRPLIEMLQSPDVQLREMSAFAL 153 (513)
Q Consensus 81 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-----~~~~--~~~i~~L~~~l~~~~~~~~~~a~~~L 153 (513)
..+...+.+..|+..|..-+.+.+..++.+..++.+...+.+. .+.. ..++..|+..-. ++++.-.+...|
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~ml 147 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDML 147 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHH
Confidence 4455668889999999999999999999999999866544432 2322 233444444333 556777888999
Q ss_pred HHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhc-ccCcchHHHHHhhcCcccccchhhhhhhhHHHHHH
Q 010291 154 GRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK 232 (513)
Q Consensus 154 ~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l-~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~ 232 (513)
+.+.+++.-.+.+.....+..+.+....++-++...|..++..+ ..+.....++....
T Consensus 148 Rec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n--------------------- 206 (335)
T PF08569_consen 148 RECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNN--------------------- 206 (335)
T ss_dssp HHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT---------------------
T ss_pred HHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHH---------------------
Confidence 99998887777888888899999999999999999999988875 44555545544322
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcc----eeeecCCchHHHHhhhcCCCcchhhhHHHH
Q 010291 233 TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR----TIFIDGGGLELLLGLLGSTNPKQQLDGAVA 308 (513)
Q Consensus 233 ~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~----~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~ 308 (513)
-..++...-.+|.+++.-.+..++..|+.+-.+..+. +.+-+..-+..++.+|++++..+|.+|-.+
T Consensus 207 ---------~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhv 277 (335)
T PF08569_consen 207 ---------YDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHV 277 (335)
T ss_dssp ---------HHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHH
Confidence 2235667778899999999999999999998766542 344444567889999999999999999998
Q ss_pred HHHhhhccc
Q 010291 309 LFKLANKAT 317 (513)
Q Consensus 309 L~~l~~~~~ 317 (513)
..-+..++.
T Consensus 278 FKvFVANp~ 286 (335)
T PF08569_consen 278 FKVFVANPN 286 (335)
T ss_dssp HHHHHH-SS
T ss_pred HHHHHhCCC
Confidence 888777643
No 165
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.70 E-value=0.041 Score=45.24 Aligned_cols=120 Identities=18% Similarity=0.222 Sum_probs=96.2
Q ss_pred CCChhHHHHhhccCC------HHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhh
Q 010291 2 EGGIPPLVELLEFTD------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLV 73 (513)
Q Consensus 2 ~g~i~~Lv~lL~~~~------~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~~l~ 73 (513)
.||+..|++++.++. .++...++.++..+..++--..+ ......|..++.....+ +..+.+.|+..|-++.
T Consensus 10 ~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~V 88 (160)
T PF11841_consen 10 RDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSLAILESIV 88 (160)
T ss_pred ccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHHHHHHHHH
Confidence 478999999998765 36777788899998886443443 44555778888887733 6899999999999999
Q ss_pred cCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhh
Q 010291 74 HSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 122 (513)
Q Consensus 74 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 122 (513)
.+++.....+.+.=-++.|+..|...+.+++.++...+..|....++.+
T Consensus 89 l~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~ 137 (160)
T PF11841_consen 89 LNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSK 137 (160)
T ss_pred hCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHH
Confidence 9988877888887789999999999999999999998888876655443
No 166
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.67 E-value=0.064 Score=46.14 Aligned_cols=92 Identities=20% Similarity=0.207 Sum_probs=74.5
Q ss_pred ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCCh-HHHHHH
Q 010291 100 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL-VPLLKL 178 (513)
Q Consensus 100 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i-~~L~~l 178 (513)
++.+|..++.+++-|+...+...+ ..++.+...|+++++.+|..|+.+|..|...+..+.. |-+ ..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHH
Confidence 467899999999999966655333 4688999999999999999999999999865443322 333 678888
Q ss_pred hcCCCHHHHHHHHHHHHhcccC
Q 010291 179 LDSKNGSLQHNAAFALYGLADN 200 (513)
Q Consensus 179 l~~~~~~~~~~a~~~L~~l~~~ 200 (513)
+.++++.++..|..++..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999998864
No 167
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.032 Score=56.45 Aligned_cols=231 Identities=16% Similarity=0.133 Sum_probs=140.1
Q ss_pred HhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCCh
Q 010291 10 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 89 (513)
Q Consensus 10 ~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 89 (513)
.-|++||+-+|-..++.|..+-. ++.- ...+|.+..+|++.++.||+.|+-++..+-...+.. -.++.
T Consensus 106 kDLQHPNEyiRG~TLRFLckLkE--~ELl-----epl~p~IracleHrhsYVRrNAilaifsIyk~~~~L-----~pDap 173 (948)
T KOG1058|consen 106 KDLQHPNEYIRGSTLRFLCKLKE--PELL-----EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHL-----IPDAP 173 (948)
T ss_pred hhccCchHhhcchhhhhhhhcCc--HHHh-----hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhh-----cCChH
Confidence 44678888888888887777654 3322 235788888999999999999999998887553221 12344
Q ss_pred HHHHHhhc-CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHH---HHhCCCCHHHHHHHHHHHHHHhhccccchh
Q 010291 90 QPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI---EMLQSPDVQLREMSAFALGRLAQDMHNQAG 165 (513)
Q Consensus 90 ~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~---~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~ 165 (513)
..+-.+|. ..|+..+++|-..|... +++. ++..|. .-+.+-++.++...+..+...|...+..+
T Consensus 174 eLi~~fL~~e~DpsCkRNAFi~L~~~---D~Er--------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~- 241 (948)
T KOG1058|consen 174 ELIESFLLTEQDPSCKRNAFLMLFTT---DPER--------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK- 241 (948)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHhc---CHHH--------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh-
Confidence 55555554 45788888776655544 2331 222333 33333467777778888888775443322
Q ss_pred hHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhh-hhhhhHHHHHHHHHHHHHH----
Q 010291 166 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF-IVQATKDCVAKTLKRLEEK---- 240 (513)
Q Consensus 166 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~-~~~~~~~~~~~~~~~~~~~---- 240 (513)
...+..+..+|.+.++.++-.|+.+|.+++.++...+.... ..+..+++... +.+. -.++++..+
T Consensus 242 ---~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~-~~i~l~~kesdnnvkl------Ivldrl~~l~~~~ 311 (948)
T KOG1058|consen 242 ---ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAAS-TYIDLLVKESDNNVKL------IVLDRLSELKALH 311 (948)
T ss_pred ---hHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHH-HHHHHHHhccCcchhh------hhHHHHHHHhhhh
Confidence 23466788888888888888888888888776654332221 11111111000 0000 011122222
Q ss_pred --hhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCC
Q 010291 241 --IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 274 (513)
Q Consensus 241 --~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~ 274 (513)
+-.+.+-.++.+|.+++-+++..++.....|+.+
T Consensus 312 ~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 312 EKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS 347 (948)
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence 2344566677788888899999998887777654
No 168
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.61 E-value=0.0045 Score=48.07 Aligned_cols=72 Identities=28% Similarity=0.314 Sum_probs=62.2
Q ss_pred CCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 010291 45 NALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 116 (513)
Q Consensus 45 g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 116 (513)
.++..|+.+|. +.++.+...|+.=|+.++...|..|..+-+.|+-..++.++.+++++|+..|+.++..+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 35788999995 5688899999999999999999999999889999999999999999999999999988753
No 169
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.57 E-value=0.069 Score=53.56 Aligned_cols=123 Identities=20% Similarity=0.196 Sum_probs=85.8
Q ss_pred CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHH
Q 010291 15 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 94 (513)
Q Consensus 15 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 94 (513)
++..++.-|+..|......-|+..+. ++..++.++++++..||..|++.|..+|.++++....+ ...|++
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~Q 103 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQ 103 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHH
Confidence 46778888888888888877776655 47789999999999999999999999999877665554 678999
Q ss_pred hhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC---CCCHHHHHHHHHHHHH
Q 010291 95 LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ---SPDVQLREMSAFALGR 155 (513)
Q Consensus 95 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~---~~~~~~~~~a~~~L~~ 155 (513)
+|.++++.....+-.+|..+...++. +.+..+.+.+. +.++.+|+.++..|..
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 99998887777777888888765554 34555665554 5677889888877754
No 170
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.093 Score=53.19 Aligned_cols=130 Identities=20% Similarity=0.183 Sum_probs=90.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHH-hcCCCHHHHHHHHHHHHhcccCcchHHHHHhh
Q 010291 132 RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKL-LDSKNGSLQHNAAFALYGLADNEDNVADFIRV 210 (513)
Q Consensus 132 ~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 210 (513)
+.+-+++.+.||-+|...+.++.- +.....+ .+++..|+.. .++.++++++.|..+|+-++..+..
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~al-Ay~GTgn-----nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~------- 588 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLAL-AYVGTGN-----NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE------- 588 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHH-HHhccCc-----hhhHHHhhcccccccchHHHHHHHHHheeeEecChh-------
Confidence 334456667788888877766543 2222211 2445566666 5677899999999999988763322
Q ss_pred cCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-hhcchhhhHHHHHhhccCCCCcceeeecCCchHH
Q 010291 211 GGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLEL 289 (513)
Q Consensus 211 g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~ 289 (513)
.++..+++|.. -++.||..++.+|+-.|.+...+. ++..
T Consensus 589 ----------------------------------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e------Ai~l 628 (929)
T KOG2062|consen 589 ----------------------------------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE------AINL 628 (929)
T ss_pred ----------------------------------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH------HHHH
Confidence 35566677765 689999999999999887655442 4666
Q ss_pred HHhhhcCCCcchhhhHHHHHHHhhh
Q 010291 290 LLGLLGSTNPKQQLDGAVALFKLAN 314 (513)
Q Consensus 290 L~~ll~~~~~~v~~~a~~~L~~l~~ 314 (513)
|-.+..++..-||+.|+.++.-+.-
T Consensus 629 Lepl~~D~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 629 LEPLTSDPVDFVRQGALIALAMIMI 653 (929)
T ss_pred HhhhhcChHHHHHHHHHHHHHHHHH
Confidence 7777778888899988888777653
No 171
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.14 Score=52.37 Aligned_cols=65 Identities=17% Similarity=0.105 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhh
Q 010291 245 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 313 (513)
Q Consensus 245 ~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 313 (513)
.+..+.....=.+..+|.+|..+|.++..... .........|.+.+.+.+.++|..|...|..+-
T Consensus 467 yir~iyNRviLEn~ivRaaAv~alaKfg~~~~----~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 467 YIRFIYNRVILENAIVRAAAVSALAKFGAQDV----VLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC----CccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 34444444444567788999999999873322 122335566778888999999999988888876
No 172
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.48 E-value=0.18 Score=44.78 Aligned_cols=194 Identities=19% Similarity=0.207 Sum_probs=115.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCC--ChHHHHHHHHHHHHhhcCCchhhHH
Q 010291 47 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVH 124 (513)
Q Consensus 47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~ 124 (513)
+..+-....+++...+...+.+|+... ....++.|+..+.+. .+-+|..|+.+|+++. .+
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~-----------~~~Av~~l~~vl~desq~pmvRhEAaealga~~--~~----- 99 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQ-----------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--DP----- 99 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhc-----------cchhhHHHHHHhcccccchHHHHHHHHHHHhhc--ch-----
Confidence 333334433333344445555555543 235788898888764 5778889999999985 23
Q ss_pred HHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchh-----hH--------hcCChHHHHHHhcCCC-HHH-HHH
Q 010291 125 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG-----IA--------HNGGLVPLLKLLDSKN-GSL-QHN 189 (513)
Q Consensus 125 ~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~-----~~--------~~~~i~~L~~ll~~~~-~~~-~~~ 189 (513)
...+.+-+..+++...+++.+..++..+-..+..... .. ..+.+..+-..+.+.+ +.. +..
T Consensus 100 ----~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~ 175 (289)
T KOG0567|consen 100 ----ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYR 175 (289)
T ss_pred ----hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHh
Confidence 2456677777777888888888888777533222110 00 0011111221111111 111 112
Q ss_pred HHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHh
Q 010291 190 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALA 269 (513)
Q Consensus 190 a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~ 269 (513)
|...|.|+- ....+..+..-+...+.-.|..++.+++
T Consensus 176 amF~LRn~g-------------------------------------------~EeaI~al~~~l~~~SalfrhEvAfVfG 212 (289)
T KOG0567|consen 176 AMFYLRNIG-------------------------------------------TEEAINALIDGLADDSALFRHEVAFVFG 212 (289)
T ss_pred hhhHhhccC-------------------------------------------cHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence 222222221 1224555666666677888999999998
Q ss_pred hccCCCCcceeeecCCchHHHHhhhcC--CCcchhhhHHHHHHHhhhc
Q 010291 270 HLCSPDDQRTIFIDGGGLELLLGLLGS--TNPKQQLDGAVALFKLANK 315 (513)
Q Consensus 270 ~l~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~ 315 (513)
.|-+ .-.|+.|...|.+ .++.+|..|+.+|..++..
T Consensus 213 Ql~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e 250 (289)
T KOG0567|consen 213 QLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE 250 (289)
T ss_pred hccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH
Confidence 7743 3468889988865 7899999999999998754
No 173
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=96.48 E-value=0.0074 Score=51.38 Aligned_cols=90 Identities=19% Similarity=0.271 Sum_probs=65.3
Q ss_pred EEEEecCeeehhhHHHHhhc--CHHHHHhccCCC--CCCCCCceecCCCCHHHHHHHHHHHhcCccc-cCHHHHHHHHHH
Q 010291 348 VTFLVEGRRFYAHRICLLAS--SDAFRAMFDGGY--REKDARDIEIPNIRWEVFELMMRFIYTGSVD-VTLDIAQDLLRA 422 (513)
Q Consensus 348 v~~~~~~~~~~~h~~il~~~--s~~f~~~~~~~~--~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~-~~~~~~~~ll~~ 422 (513)
|.+.++|+.|...+.-+.-+ -....+||.+.- .+.+..--.+-|-++..|+.++.|+-.|.+. .+.-++.++++.
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLee 90 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEE 90 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHHHHHH
Confidence 55666777776555544443 346778887642 2222233344456999999999999999987 455678999999
Q ss_pred HHHhcHHHHHHHHHH
Q 010291 423 ADQYLLEGLKRLCEY 437 (513)
Q Consensus 423 A~~~~~~~l~~~c~~ 437 (513)
|+||++-+|+...+.
T Consensus 91 Arff~i~sL~~hle~ 105 (302)
T KOG1665|consen 91 ARFFQILSLKDHLED 105 (302)
T ss_pred hhHHhhHhHHhHHhh
Confidence 999999999998877
No 174
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.2 Score=55.13 Aligned_cols=179 Identities=16% Similarity=0.122 Sum_probs=101.7
Q ss_pred hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH--HHH
Q 010291 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI--KKE 82 (513)
Q Consensus 5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~--~~~ 82 (513)
||.|.+.==+|++.+| .|...|++....++.....-.-..+.+-|+.-|.+....+|+.++-+|..|..+.+.. .+.
T Consensus 1000 IPrLyRY~yDP~~~Vq-~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~ 1078 (1702)
T KOG0915|consen 1000 IPRLYRYQYDPDKKVQ-DAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEK 1078 (1702)
T ss_pred hHHHhhhccCCcHHHH-HHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 4555555456777777 5666666665433333222222346777777777888999999999999999875442 222
Q ss_pred HHhCCChHHHHHhhcCCChHHHHH---HHHHHHHhhcC--Cc--hhhHHHHhcCChHHHHH-HhCCCCHHHHHHHHHHHH
Q 010291 83 VLAAGALQPVIGLLSSCCSESQRE---AALLLGQFAAT--DS--DCKVHIVQRGAVRPLIE-MLQSPDVQLREMSAFALG 154 (513)
Q Consensus 83 ~~~~g~i~~L~~ll~~~~~~~~~~---a~~~L~~l~~~--~~--~~~~~~~~~~~i~~L~~-~l~~~~~~~~~~a~~~L~ 154 (513)
+- ..+..+.+.+++-...+|+. ++.+|..+|.. ++ .....-.-..++|.|+. -+-+.-++++..++.++.
T Consensus 1079 lp--elw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~ 1156 (1702)
T KOG0915|consen 1079 LP--ELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLM 1156 (1702)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHH
Confidence 21 34555566666555566644 55667776621 11 11111111123444431 112456789999999999
Q ss_pred HHhhccccchhhHhcCChHHHHHHhcCCCHHH
Q 010291 155 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSL 186 (513)
Q Consensus 155 ~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~ 186 (513)
.|+......-+-.-...++.|+.....-.+.+
T Consensus 1157 dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~v 1188 (1702)
T KOG0915|consen 1157 DLAKSSGKELKPHFPKLIPLLLNAYSELEPQV 1188 (1702)
T ss_pred HHHHhchhhhcchhhHHHHHHHHHccccchHH
Confidence 99976654322222234555566555444443
No 175
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.44 E-value=0.05 Score=56.83 Aligned_cols=297 Identities=18% Similarity=0.122 Sum_probs=168.1
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHh
Q 010291 7 PLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 85 (513)
Q Consensus 7 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 85 (513)
+...+++....+.+..++.-...++.. +......+....+++.+-.+..+.+..++...+.....+.--.+. .-.-
T Consensus 359 ~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k---~~ti 435 (759)
T KOG0211|consen 359 PVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK---ERTI 435 (759)
T ss_pred hHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc---CcCc
Confidence 334444444445555555444444432 223344455555566666666677777777776666555422221 0001
Q ss_pred CCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchh
Q 010291 86 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG 165 (513)
Q Consensus 86 ~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~ 165 (513)
....+.++..+.+..++++.+..+.+..+-...+...........++.+..+-....-.++....+.+..++.... ..
T Consensus 436 ~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~ 513 (759)
T KOG0211|consen 436 SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VE 513 (759)
T ss_pred cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hH
Confidence 2345666777788889999988887766654444434445555667777777666666777777777777775333 22
Q ss_pred hHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc--CcchHHHHHhhcCcccccchhhh-hhhhHHHHHHHHHHH-----
Q 010291 166 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADFIRVGGVQKLQDGEFI-VQATKDCVAKTLKRL----- 237 (513)
Q Consensus 166 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~i~~L~~~~~~-~~~~~~~~~~~~~~~----- 237 (513)
+.+...-+.+...+.+....++++|+..+..++. +...... ..++.+...... ..........++..+
T Consensus 514 ~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~----~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g 589 (759)
T KOG0211|consen 514 FFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARL----EEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG 589 (759)
T ss_pred HhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHH----HhhHHHHHHhcCcccchhhHHHHHHHHHHHHhc
Confidence 3332223334445555556788888887777764 2111111 111111100000 000111111222222
Q ss_pred HHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhh
Q 010291 238 EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 314 (513)
Q Consensus 238 ~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 314 (513)
+......+++.+..+..++.+.||.+++..|..+...-.. ...+....|.+..+..+++.+++..|..+...+..
T Consensus 590 ~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~--~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 590 QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE--SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch--HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 2234566888888888889999999999999887543221 12334456777777778888999888777666543
No 176
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=96.40 E-value=0.011 Score=55.69 Aligned_cols=87 Identities=25% Similarity=0.316 Sum_probs=69.0
Q ss_pred ccEEEEecCeeehhhHHHHhhcC--HHHHHhccCCCCCCCCCc--eecCCCCHHHHHHHHHHHhcCccccCHHHHHHHHH
Q 010291 346 SDVTFLVEGRRFYAHRICLLASS--DAFRAMFDGGYREKDARD--IEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLR 421 (513)
Q Consensus 346 ~Dv~~~~~~~~~~~h~~il~~~s--~~f~~~~~~~~~e~~~~~--i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~ 421 (513)
.-|.+.|||+.|...+.-|+-.. .||.+++++.+.-..... |-+ |=+|+.|..+|+|+-||+++++.-....++.
T Consensus 11 ~~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-DRDPdlFaviLn~LRTg~L~~~g~~~~~llh 89 (465)
T KOG2714|consen 11 DRVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-DRDPDLFAVILNLLRTGDLDASGVFPERLLH 89 (465)
T ss_pred ceEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-cCCchHHHHHHHHHhcCCCCCccCchhhhhh
Confidence 34788899999998888877554 799999998775443332 444 4499999999999999999987666665555
Q ss_pred -HHHHhcHHHHHH
Q 010291 422 -AADQYLLEGLKR 433 (513)
Q Consensus 422 -~A~~~~~~~l~~ 433 (513)
-|.||++..|.+
T Consensus 90 dEA~fYGl~~llr 102 (465)
T KOG2714|consen 90 DEAMFYGLTPLLR 102 (465)
T ss_pred hhhhhcCcHHHHH
Confidence 999999999876
No 177
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.40 E-value=0.45 Score=50.36 Aligned_cols=249 Identities=14% Similarity=0.130 Sum_probs=142.6
Q ss_pred CCChhHHHHhhcc-----CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc----CCC----HHHHHHHHHH
Q 010291 2 EGGIPPLVELLEF-----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR----SED----SAIHYEAVGV 68 (513)
Q Consensus 2 ~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~----~~~----~~v~~~a~~~ 68 (513)
.|++..+++++.+ .........+..|..++. -+.+|+.+.+.|+++.|+..|. .+. +.+-+.-+.+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 5889999999865 234555566777777776 7999999999999999998775 333 5677777766
Q ss_pred HHHhhcCChhHHHH----HHhCC--------ChHHHHHhhcC----CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChH
Q 010291 69 IGNLVHSSPNIKKE----VLAAG--------ALQPVIGLLSS----CCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 132 (513)
Q Consensus 69 L~~l~~~~~~~~~~----~~~~g--------~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 132 (513)
+..+..+....... ..... -+..+++.+++ .++.+....+++|-.|+.++++..+.+++ ...
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--~F~ 272 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--HFK 272 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--HHH
Confidence 66665432211110 01111 25666666665 35788999999999999888887666554 122
Q ss_pred HHHHHhC--CC-CHHHHHHHHHHHHHHhh----cc---ccchhhHhcCChHHHHHHhcCCC--------HH--------H
Q 010291 133 PLIEMLQ--SP-DVQLREMSAFALGRLAQ----DM---HNQAGIAHNGGLVPLLKLLDSKN--------GS--------L 186 (513)
Q Consensus 133 ~L~~~l~--~~-~~~~~~~a~~~L~~l~~----~~---~~~~~~~~~~~i~~L~~ll~~~~--------~~--------~ 186 (513)
+.+++=+ .. .++- ...+.+++.++. +. .-|..+++.|.+...++++...- ++ .
T Consensus 273 p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps 351 (802)
T PF13764_consen 273 PYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS 351 (802)
T ss_pred HhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence 2222111 11 1111 122444444442 22 22667888899988887775321 22 2
Q ss_pred HHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 010291 187 QHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV 255 (513)
Q Consensus 187 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~ 255 (513)
...++..|.-||............+.++ +++...........-..+.+.++.+.+..-+...+.-++.
T Consensus 352 Lp~iL~lL~GLa~gh~~tQ~~~~~~~l~-~lH~LEqvss~~~IGslAEnlLeal~~~~~v~~~I~~lR~ 419 (802)
T PF13764_consen 352 LPYILRLLRGLARGHEPTQLLIAEQLLP-LLHRLEQVSSEEHIGSLAENLLEALAENEDVAKKIQNLRK 419 (802)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHhhHHH-HHHHhhcCCCccchHHHHHHHHHHHhcChhHHHHHHHHHH
Confidence 3357788888888655444555566663 3332222222222222233334444444445555555544
No 178
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.078 Score=51.24 Aligned_cols=257 Identities=16% Similarity=0.071 Sum_probs=135.1
Q ss_pred cCCHHHHHHhh----cCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHh-hcCCChHHHHHHHHHHHHhhcCC
Q 010291 44 CNALPTLILML----RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL-LSSCCSESQREAALLLGQFAATD 118 (513)
Q Consensus 44 ~g~i~~Lv~lL----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~ 118 (513)
.|....++..+ .+++..+|..|++.|++.+...+.-...... -.+..++.- .+..+.+|.-.+..+|..+...
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~- 330 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK- 330 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh-
Confidence 35555444433 3677889999999999999885543222222 234445444 4455688999999888887622
Q ss_pred chhhHHHHhcCCh---HHHHHHhCCCCHHHHHHHHHHHHHHhhcccc--chhhHh--cCChHHHHHHhcCCCHHHHHHHH
Q 010291 119 SDCKVHIVQRGAV---RPLIEMLQSPDVQLREMSAFALGRLAQDMHN--QAGIAH--NGGLVPLLKLLDSKNGSLQHNAA 191 (513)
Q Consensus 119 ~~~~~~~~~~~~i---~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~--~~~i~~L~~ll~~~~~~~~~~a~ 191 (513)
....-+..+.+ -.+..+..+.+++++..+...++.|+.-... +..+.+ .+...+++-.++++++.+ ..|+
T Consensus 331 --~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~AC 407 (533)
T KOG2032|consen 331 --ASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARAC 407 (533)
T ss_pred --hhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHH
Confidence 11122223333 3456677788999999999999999854443 333332 234455666667777776 4567
Q ss_pred HHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH--------hhcchhhh
Q 010291 192 FALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV--------AEKGVQRR 263 (513)
Q Consensus 192 ~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~--------~~~~v~~~ 263 (513)
+.....|...-.+.+.. +.++...+... .....-.+.. -+.-....+.++.++.+ .-+.+|..
T Consensus 408 r~~~~~c~p~l~rke~~--~~~q~~ld~~~------~~~q~Fyn~~-c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~a 478 (533)
T KOG2032|consen 408 RSELRTCYPNLVRKELY--HLFQESLDTDM------ARFQAFYNQW-CIQLNHIHPDILMLLLTEDQHIFSSSWEQVREA 478 (533)
T ss_pred HHHHHhcCchhHHHHHH--HHHhhhhHHhH------HHHHHHHHHH-HHHHhhhCHHHHHHHHHhchhheecchHHHHHH
Confidence 76666664222222211 11111111000 0000000000 00011122222222222 22345555
Q ss_pred HHHHHhhccCC--CCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhh
Q 010291 264 VALALAHLCSP--DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 314 (513)
Q Consensus 264 a~~aL~~l~~~--~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 314 (513)
+...-.+...+ +..+...-.......|..+..++-|+++..+..++..+..
T Consensus 479 avl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 479 AVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 55544444322 1111111111234667777778999999999998877654
No 179
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.088 Score=53.46 Aligned_cols=287 Identities=18% Similarity=0.185 Sum_probs=137.4
Q ss_pred CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHH-Hhhc-CCCHHHHHHHHHH------------
Q 010291 3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLR-SEDSAIHYEAVGV------------ 68 (513)
Q Consensus 3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv-~lL~-~~~~~v~~~a~~~------------ 68 (513)
..+|.+...|.+..+-+|.+|.-++..+-...+ .++. . .|.|+ ..|. ..++..++.|...
T Consensus 134 pl~p~IracleHrhsYVRrNAilaifsIyk~~~----~L~p-D-apeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Y 207 (948)
T KOG1058|consen 134 PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE----HLIP-D-APELIESFLLTEQDPSCKRNAFLMLFTTDPERALNY 207 (948)
T ss_pred hhHHHHHHHHhCcchhhhhhhheeehhHHhhhh----hhcC-C-hHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHH
Confidence 356778888999999999999999888876311 1111 0 12222 2222 3344444444333
Q ss_pred ----------------------HHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHH
Q 010291 69 ----------------------IGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 126 (513)
Q Consensus 69 ----------------------L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 126 (513)
+...+..++..+. ..+..+..+|.+.++.++..|+.+|.+++ .+|.....
T Consensus 208 l~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~-----~~i~~i~~lL~stssaV~fEaa~tlv~lS-~~p~alk~-- 279 (948)
T KOG1058|consen 208 LLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA-----RYIRCIYNLLSSTSSAVIFEAAGTLVTLS-NDPTALKA-- 279 (948)
T ss_pred HHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh-----HHHHHHHHHHhcCCchhhhhhcceEEEcc-CCHHHHHH--
Confidence 3333322222211 13445555565566666666666666664 22322211
Q ss_pred hcCChHHHHHHhCC-CCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcch--
Q 010291 127 QRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN-- 203 (513)
Q Consensus 127 ~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-- 203 (513)
....++.++.+ +|-.+......-|..+. ...+.+. .|.+-.++..|.++|-+++..++.....|+.+...
T Consensus 280 ---Aa~~~i~l~~kesdnnvklIvldrl~~l~---~~~~~il-~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNved 352 (948)
T KOG1058|consen 280 ---AASTYIDLLVKESDNNVKLIVLDRLSELK---ALHEKIL-QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVED 352 (948)
T ss_pred ---HHHHHHHHHHhccCcchhhhhHHHHHHHh---hhhHHHH-HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHH
Confidence 12233333322 22223322333333332 1111111 23444577888999999999999988888764422
Q ss_pred HHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccC-CCCcce
Q 010291 204 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE---KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRT 279 (513)
Q Consensus 204 ~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~ 279 (513)
...+++......--......+.-...+..++..... -..+.+++.|+.++.+.++......+..+..... .|..|
T Consensus 353 iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr- 431 (948)
T KOG1058|consen 353 IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR- 431 (948)
T ss_pred HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH-
Confidence 122222221111100000001111222222222211 1345678888888877665544444433333322 23233
Q ss_pred eeecCCchHHHHhhhcC-CCcchhhhHHHHHHHhhhc
Q 010291 280 IFIDGGGLELLLGLLGS-TNPKQQLDGAVALFKLANK 315 (513)
Q Consensus 280 ~l~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~ 315 (513)
...+..|+.-+.. .++.+-+.|+|.++..+..
T Consensus 432 ----~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~ 464 (948)
T KOG1058|consen 432 ----ASIIEKLLETFPQIRSSKICRGALWILGEYCEG 464 (948)
T ss_pred ----HHHHHHHHHhhhhhcccccchhHHHHHHHHHhh
Confidence 2345555555543 5667777777877766644
No 180
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.25 E-value=0.15 Score=53.43 Aligned_cols=225 Identities=19% Similarity=0.127 Sum_probs=147.7
Q ss_pred ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 83 (513)
Q Consensus 4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 83 (513)
.+|.++..+++..+.++.+..+.+..+-.-++...........++.+..+-.+....++....+.+..++.... ..+
T Consensus 438 llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~ 514 (759)
T KOG0211|consen 438 LLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEF 514 (759)
T ss_pred cChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHH
Confidence 45667777888889999999887766655444555555566677777777776678888888888888875422 222
Q ss_pred HhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccc
Q 010291 84 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 163 (513)
Q Consensus 84 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 163 (513)
...-.-+.+...+.+...+++..|+..+..++.... ........++.++....+++-..|...+.++..++.-- -
T Consensus 515 ~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G---~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~--g 589 (759)
T KOG0211|consen 515 FDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG---SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVL--G 589 (759)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC---cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHh--c
Confidence 222233334444555567889999888888873322 11122245667777776666667777777776655311 2
Q ss_pred hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhh
Q 010291 164 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 243 (513)
Q Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (513)
..+.....++.+..+..++.+.++-+++..+-.+...-.. ...+.
T Consensus 590 ~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~-----------------------------------~~~~~ 634 (759)
T KOG0211|consen 590 QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE-----------------------------------SVRDE 634 (759)
T ss_pred cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch-----------------------------------HHHHH
Confidence 2344455677888998999999999999888766542111 12344
Q ss_pred hhHHHHHHHHHHhhcchhhhHHHHHhhc
Q 010291 244 RVLNHLLYLMRVAEKGVQRRVALALAHL 271 (513)
Q Consensus 244 ~~l~~Lv~lL~~~~~~v~~~a~~aL~~l 271 (513)
.+.+.+..+.++++.+++..|..+.+.+
T Consensus 635 ~v~pll~~L~~d~~~dvr~~a~~a~~~i 662 (759)
T KOG0211|consen 635 EVLPLLETLSSDQELDVRYRAILAFGSI 662 (759)
T ss_pred HHHHHHHHhccCcccchhHHHHHHHHHH
Confidence 5666666777778888888888877655
No 181
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.069 Score=54.05 Aligned_cols=157 Identities=22% Similarity=0.185 Sum_probs=92.5
Q ss_pred HHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCC
Q 010291 9 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 87 (513)
Q Consensus 9 v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 87 (513)
-+++.+.+|-+|...+..+.---.+. .+.++|..|++. ..+.|.+||+.|+.+|+-++...++.
T Consensus 525 ~el~~dkdpilR~~Gm~t~alAy~GT-------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~-------- 589 (929)
T KOG2062|consen 525 KELLRDKDPILRYGGMYTLALAYVGT-------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ-------- 589 (929)
T ss_pred HHHhcCCchhhhhhhHHHHHHHHhcc-------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChhh--------
Confidence 34455566666666655444222111 123456666666 44678888888888888888776653
Q ss_pred ChHHHHHhhc-CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhh
Q 010291 88 ALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI 166 (513)
Q Consensus 88 ~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 166 (513)
++..+.+|. +.++.||..++.+|+-.|.+... +. ++..|-.+.+++..-||..|+-++.-+......+.--
T Consensus 590 -~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~p 661 (929)
T KOG2062|consen 590 -LPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCP 661 (929)
T ss_pred -chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCc
Confidence 444555554 56788888888888888865332 22 2344445555666678888877777766433222111
Q ss_pred HhcCChHHHHHHhcCCCHHHHH
Q 010291 167 AHNGGLVPLLKLLDSKNGSLQH 188 (513)
Q Consensus 167 ~~~~~i~~L~~ll~~~~~~~~~ 188 (513)
.-.+..+.+.+.+.+++.+...
T Consensus 662 kv~~frk~l~kvI~dKhEd~~a 683 (929)
T KOG2062|consen 662 KVNGFRKQLEKVINDKHEDGMA 683 (929)
T ss_pred hHHHHHHHHHHHhhhhhhHHHH
Confidence 1123444567777766655433
No 182
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.16 E-value=0.02 Score=49.31 Aligned_cols=112 Identities=16% Similarity=0.111 Sum_probs=82.3
Q ss_pred CCChHHHHHHHHHHHHhhcCCchhhHHHH---------------hcCChHHHHHHhCC------CCHHHHHHHHHHHHHH
Q 010291 98 SCCSESQREAALLLGQFAATDSDCKVHIV---------------QRGAVRPLIEMLQS------PDVQLREMSAFALGRL 156 (513)
Q Consensus 98 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~---------------~~~~i~~L~~~l~~------~~~~~~~~a~~~L~~l 156 (513)
++.......++..|.|++..+......+- +...+..|+..+.. +...-..+.+.++.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 44555667788899999876554432221 12356777777765 2334567889999999
Q ss_pred hhccccchhhHhcC--C--hHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHh
Q 010291 157 AQDMHNQAGIAHNG--G--LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR 209 (513)
Q Consensus 157 ~~~~~~~~~~~~~~--~--i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 209 (513)
+..++.|..+.+.. . +..|+..+.+.+...+.-++++|.|+|.+.+....+..
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~ 142 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLS 142 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcC
Confidence 99999999988743 3 66788888888877888899999999998887766654
No 183
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.09 E-value=0.096 Score=47.09 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHh
Q 010291 17 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 95 (513)
Q Consensus 17 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 95 (513)
......|++.|.-++--++..+..+.....+..++++|. ...+.++..++.+|..+..+++.+...+-+.+|+..++.+
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 345667889999888889999999999999999999995 5678999999999999999999999999999999999999
Q ss_pred hcCC--ChHHHHHHHHHHHHhh
Q 010291 96 LSSC--CSESQREAALLLGQFA 115 (513)
Q Consensus 96 l~~~--~~~~~~~a~~~L~~l~ 115 (513)
+++. +.+++..++..|.-..
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred HccccccHHHhHHHHHHHHHHH
Confidence 9875 4677777777766554
No 184
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.05 E-value=0.37 Score=46.73 Aligned_cols=162 Identities=12% Similarity=0.154 Sum_probs=115.7
Q ss_pred HHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC------C------------------C----------HHHHHHHHH
Q 010291 22 AAAGALRTLAFKNDENKNQIVECNALPTLILMLRS------E------------------D----------SAIHYEAVG 67 (513)
Q Consensus 22 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~------~------------------~----------~~v~~~a~~ 67 (513)
.|++.|-.+....+.....+.+.+|+..+++.|+. + . ..+.+.-++
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk 82 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK 82 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence 45666666666556666677777777777766531 1 0 112223334
Q ss_pred HHHHhhc---CChhHHHHHHh-CCChHHHHHhhcCC---ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC-
Q 010291 68 VIGNLVH---SSPNIKKEVLA-AGALQPVIGLLSSC---CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ- 139 (513)
Q Consensus 68 ~L~~l~~---~~~~~~~~~~~-~g~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~- 139 (513)
.+..+.. +....-+.+.+ ...+..|..++++. .+.+-..|+.++..+....|.....+.+.|.++.+++.+.
T Consensus 83 ~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~ 162 (379)
T PF06025_consen 83 FLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITA 162 (379)
T ss_pred HHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhc
Confidence 4444444 22222233444 34555666666653 4688899999999999899998899999999999999988
Q ss_pred C---CCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCC
Q 010291 140 S---PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 183 (513)
Q Consensus 140 ~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~ 183 (513)
. ++.++....-.++..+|-+..+.+.+.+.+.++.+++++.+++
T Consensus 163 ~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 163 KGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred cCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHH
Confidence 4 4778888999999999999999999999999999999998754
No 185
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.05 E-value=0.53 Score=44.37 Aligned_cols=188 Identities=17% Similarity=0.144 Sum_probs=114.0
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC--ChhHHHH
Q 010291 7 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHS--SPNIKKE 82 (513)
Q Consensus 7 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~ 82 (513)
..+..+.......|..++..+.++..... ....+.+ ...+..+.+.++.+..+-+..|+.+++-++.. .......
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 44555666778999999999998886432 2222222 24577888888877666677787777777644 1222233
Q ss_pred HHhCCChHHHHHhhcCCC--hHHHHHHHHHHHHhhc---CCchhhHHHHhcCChHH--HHHHhCC----------CCHHH
Q 010291 83 VLAAGALQPVIGLLSSCC--SESQREAALLLGQFAA---TDSDCKVHIVQRGAVRP--LIEMLQS----------PDVQL 145 (513)
Q Consensus 83 ~~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~--L~~~l~~----------~~~~~ 145 (513)
+++ ...+.|...+.+.. ...|..++.+|+-++. .+++.....+ ..+.. .....+. +++.+
T Consensus 126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 333 36778888887654 4566666666666653 2222222111 23332 2222222 23567
Q ss_pred HHHHHHHHHHHhhccccc-hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 010291 146 REMSAFALGRLAQDMHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 198 (513)
Q Consensus 146 ~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 198 (513)
...|+.+.+-|...-+.. ..-.-...++.|..+|.+++..++..|..+|+-|-
T Consensus 203 ~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 777777766666433331 11122456888999999999999999998887664
No 186
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.94 E-value=0.015 Score=33.45 Aligned_cols=28 Identities=21% Similarity=0.481 Sum_probs=25.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 010291 47 LPTLILMLRSEDSAIHYEAVGVIGNLVH 74 (513)
Q Consensus 47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~~ 74 (513)
+|.+++++++++++||..|+.+|+.++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999975
No 187
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.92 E-value=0.079 Score=45.72 Aligned_cols=112 Identities=13% Similarity=0.128 Sum_probs=79.4
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhHHHHHHhC----------------CChHHHHHhhcC------CChHHHHHHHHHHHH
Q 010291 56 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA----------------GALQPVIGLLSS------CCSESQREAALLLGQ 113 (513)
Q Consensus 56 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----------------g~i~~L~~ll~~------~~~~~~~~a~~~L~~ 113 (513)
+++......++.+|.|++...... ..+++. ..+..|+..+.. +..+-..+.+.++.|
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 344556777888999999864444 333322 245666666654 233455778899999
Q ss_pred hhcCCchhhHHHHhc--CC--hHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhc
Q 010291 114 FAATDSDCKVHIVQR--GA--VRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHN 169 (513)
Q Consensus 114 l~~~~~~~~~~~~~~--~~--i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 169 (513)
++.. ++.|..+.+. +. +..|+.++.+.+..-|.-++.+|.|+|.+.+....+...
T Consensus 85 lS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~ 143 (192)
T PF04063_consen 85 LSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSD 143 (192)
T ss_pred hcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCc
Confidence 9754 7778877753 34 778888888888888899999999999888877776663
No 188
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.92 E-value=0.67 Score=43.62 Aligned_cols=150 Identities=20% Similarity=0.166 Sum_probs=96.0
Q ss_pred CCHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCc-hhh
Q 010291 45 NALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCK 122 (513)
Q Consensus 45 g~i~~Lv-~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~ 122 (513)
+.+..++ +.+.+.++.+|+.|+.+|+-.+--+...... .++.+...+..++.+++..|+.++..+..... ...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 3454444 7778899999999999999999765543222 36667777777789999999999988873221 111
Q ss_pred HH-------HHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHH-hcC---CCHHHHHHHH
Q 010291 123 VH-------IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKL-LDS---KNGSLQHNAA 191 (513)
Q Consensus 123 ~~-------~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~l-l~~---~~~~~~~~a~ 191 (513)
.. ......+..+.+.+.+.+++++..++..++.|.-...... ....+..|+-+ +.. ++..++..-.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 11 1123567788888888999999999999999875443322 12233333322 222 2344444444
Q ss_pred HHHHhcccCcc
Q 010291 192 FALYGLADNED 202 (513)
Q Consensus 192 ~~L~~l~~~~~ 202 (513)
..+-..|....
T Consensus 178 ~Ffp~y~~s~~ 188 (298)
T PF12719_consen 178 VFFPVYASSSP 188 (298)
T ss_pred HHHHHHHcCCH
Confidence 45555665443
No 189
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.92 E-value=0.15 Score=52.28 Aligned_cols=191 Identities=18% Similarity=0.183 Sum_probs=129.4
Q ss_pred CCChhHHHHhhccCCHHHHHHHHHHHH-HhhccCchhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhH
Q 010291 2 EGGIPPLVELLEFTDTKVQRAAAGALR-TLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNI 79 (513)
Q Consensus 2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~-~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~ 79 (513)
.|+...|+++.....+.-+..+..+|. .+...... ...+++++.+.+.. ....-...++.++.||+..++..
T Consensus 503 ~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~ 576 (748)
T KOG4151|consen 503 PGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEALEALTNLASISESD 576 (748)
T ss_pred ccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhh
Confidence 366777777777667777777777666 22221111 12345555555542 22233456888999999988888
Q ss_pred HHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHh-cCChHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010291 80 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158 (513)
Q Consensus 80 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 158 (513)
|+.+.+.-+++.+-.++..+++..++.++..+.||..+.--....+.+ ...++.....+...+......++.++..+..
T Consensus 577 r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~s 656 (748)
T KOG4151|consen 577 RQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITS 656 (748)
T ss_pred HHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhh
Confidence 888888877887778888889999999999999998654433344444 4455555555555666677777777776665
Q ss_pred ccccc-h-hhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 010291 159 DMHNQ-A-GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 198 (513)
Q Consensus 159 ~~~~~-~-~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 198 (513)
...+. . ..........++.++.+.+..++...+..+.|+.
T Consensus 657 v~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~ 698 (748)
T KOG4151|consen 657 VVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLF 698 (748)
T ss_pred cchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHH
Confidence 55442 2 3333566777889999999999999888888844
No 190
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.89 E-value=0.13 Score=48.51 Aligned_cols=169 Identities=17% Similarity=0.158 Sum_probs=109.8
Q ss_pred hhHHH-HhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-hHHHH
Q 010291 5 IPPLV-ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-NIKKE 82 (513)
Q Consensus 5 i~~Lv-~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~ 82 (513)
+..|+ ..++++++.+|..|+++|+-.+--+.+.... .++.+...+..++..++..|+.++.-+..-.. ..-+.
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 33444 5668889999999999999988754433322 26677777777799999999999988864221 11111
Q ss_pred -------HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC----CCHHHHHHHHH
Q 010291 83 -------VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS----PDVQLREMSAF 151 (513)
Q Consensus 83 -------~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~----~~~~~~~~a~~ 151 (513)
......+..+...+.+.+++++..++..++.|.-.+--.- ...++..|+-.--+ ++..++.--..
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~ 178 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCLSV 178 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence 1123466778888888999999999999999874322111 12234444333322 35677777777
Q ss_pred HHHHHhhccccchhhHhcCChHHHHHHhcCC
Q 010291 152 ALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK 182 (513)
Q Consensus 152 ~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~ 182 (513)
.+-..+......+..+....++.+..+....
T Consensus 179 Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 179 FFPVYASSSPENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 7777776666555555566666666666543
No 191
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.88 E-value=0.21 Score=44.92 Aligned_cols=99 Identities=16% Similarity=0.085 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcC-CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHh
Q 010291 60 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 138 (513)
Q Consensus 60 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l 138 (513)
.....|++.|..++--.+..|..+.+...+..++.+++. ..+.++..++.+|..+..+++.+...+-+.+++..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 356668899999998889999999999999999999954 5788999999999999999999999999999999999999
Q ss_pred CCC--CHHHHHHHHHHHHHHhh
Q 010291 139 QSP--DVQLREMSAFALGRLAQ 158 (513)
Q Consensus 139 ~~~--~~~~~~~a~~~L~~l~~ 158 (513)
++. +.+++-.++..|.-...
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHc
Confidence 975 66777777776666554
No 192
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.25 Score=52.42 Aligned_cols=208 Identities=21% Similarity=0.173 Sum_probs=120.4
Q ss_pred CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHH
Q 010291 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIK 80 (513)
Q Consensus 2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~ 80 (513)
+++++.|.+.|++.+..++..|++.++.++...| ..+.+ .++...++++.- +++..--.|+-+|..++...--.-
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 3566777888888999999999999999998655 22222 256666776652 234445578888888885321110
Q ss_pred HHHHhCCChHHHHHhhc--------CCChHHHHHHHHHHHHhhcCCchhhHH-HHhcCChHHHHHHhCCCCHHHHHHHHH
Q 010291 81 KEVLAAGALQPVIGLLS--------SCCSESQREAALLLGQFAATDSDCKVH-IVQRGAVRPLIEMLQSPDVQLREMSAF 151 (513)
Q Consensus 81 ~~~~~~g~i~~L~~ll~--------~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~i~~L~~~l~~~~~~~~~~a~~ 151 (513)
..+ ..+++.++.-+. +....+|..|+.+.+.+++.....-.. +.+.=.-..|+..+-+++...|+.|..
T Consensus 416 s~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 111 124555555543 234578999999999998665443111 111111122334445677778888888
Q ss_pred HHHHHhhccccc----hh----------------------hHh-cCChHHHHHH-----hcCCCHHHHHHHHHHHHhccc
Q 010291 152 ALGRLAQDMHNQ----AG----------------------IAH-NGGLVPLLKL-----LDSKNGSLQHNAAFALYGLAD 199 (513)
Q Consensus 152 ~L~~l~~~~~~~----~~----------------------~~~-~~~i~~L~~l-----l~~~~~~~~~~a~~~L~~l~~ 199 (513)
++........+. .. +.+ .|...++++- +.+=|..+++.++++|.+|+.
T Consensus 494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 887766432221 10 111 1223333322 234468888999999998775
Q ss_pred CcchHHHHHhhcCcccccc
Q 010291 200 NEDNVADFIRVGGVQKLQD 218 (513)
Q Consensus 200 ~~~~~~~~~~~g~i~~L~~ 218 (513)
. ..+....+.++++++
T Consensus 574 ~---~pk~~a~~~L~~lld 589 (1133)
T KOG1943|consen 574 T---EPKYLADYVLPPLLD 589 (1133)
T ss_pred h---hHHhhcccchhhhhh
Confidence 2 223344455555554
No 193
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.75 E-value=0.016 Score=33.29 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=25.4
Q ss_pred hhHHHHhhccCCHHHHHHHHHHHHHhhc
Q 010291 5 IPPLVELLEFTDTKVQRAAAGALRTLAF 32 (513)
Q Consensus 5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 32 (513)
+|.++++++++++++|..|+.+|+.+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999986
No 194
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.63 E-value=1.8 Score=43.07 Aligned_cols=101 Identities=20% Similarity=0.164 Sum_probs=64.1
Q ss_pred hHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHh
Q 010291 89 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAH 168 (513)
Q Consensus 89 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 168 (513)
.|.|-..+.+.-.-+...++++++.++..+-. ...+ ...+..|-.+|+++....|-.|.++|..|+...+.+-....
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN 342 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN 342 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC
Confidence 45555566665567777888888777643311 1111 13566788888899999999999999999976655433222
Q ss_pred cCChHHHHHHhcCCCHHHHHHHHHHHHh
Q 010291 169 NGGLVPLLKLLDSKNGSLQHNAAFALYG 196 (513)
Q Consensus 169 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 196 (513)
+.+-.++.+.+..+...|+..|..
T Consensus 343 ----~evEsLIsd~Nr~IstyAITtLLK 366 (898)
T COG5240 343 ----KEVESLISDENRTISTYAITTLLK 366 (898)
T ss_pred ----hhHHHHhhcccccchHHHHHHHHH
Confidence 234556666666666666555543
No 195
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.47 E-value=0.87 Score=42.94 Aligned_cols=192 Identities=20% Similarity=0.107 Sum_probs=109.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHh--CCChHHHHHhhcCCChHHHHHHHHHHHHhhcC--Cchhh
Q 010291 47 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLSSCCSESQREAALLLGQFAAT--DSDCK 122 (513)
Q Consensus 47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~ 122 (513)
+...+..+.+.....|+.++..+.++...... .+.+.. ...+..+.+.++.+..+-+..|+.++.-++.. .....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 34455555667788999999999888754322 122221 13566777777777666666676666666533 22223
Q ss_pred HHHHhcCChHHHHHHhCCC--CHHHHHHHHHHHHHHhhcccc-chhhH-hcCChHHHHHH--hc----------CCCHHH
Q 010291 123 VHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQDMHN-QAGIA-HNGGLVPLLKL--LD----------SKNGSL 186 (513)
Q Consensus 123 ~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~~~~-~~~~~-~~~~i~~L~~l--l~----------~~~~~~ 186 (513)
..+.+ ...|.|.+.+.++ .+.++..++.+|+-++..... -..+. ....+..++.. .. .+++.+
T Consensus 124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 33333 5677888888765 456767777777776642211 11111 00112211111 11 112456
Q ss_pred HHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHH
Q 010291 187 QHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVAL 266 (513)
Q Consensus 187 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~ 266 (513)
...|+.+.+-|...-+.. . +. ..-...++.|..+|.+++.+||.+|-.
T Consensus 203 ~~aAL~aW~lLlt~~~~~-~------------------------------~~-~~~~~~~~~l~~lL~s~d~~VRiAAGE 250 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDS-K------------------------------LE-DLLEEALPALSELLDSDDVDVRIAAGE 250 (309)
T ss_pred HHHHHHHHHHHHhcCCHH-H------------------------------HH-HHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 677776666655322110 0 00 011335889999999999999999999
Q ss_pred HHhhcc
Q 010291 267 ALAHLC 272 (513)
Q Consensus 267 aL~~l~ 272 (513)
+|+-|.
T Consensus 251 aiAll~ 256 (309)
T PF05004_consen 251 AIALLY 256 (309)
T ss_pred HHHHHH
Confidence 998774
No 196
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.22 Score=49.13 Aligned_cols=155 Identities=17% Similarity=0.135 Sum_probs=99.2
Q ss_pred HHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCC
Q 010291 9 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 87 (513)
Q Consensus 9 v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 87 (513)
-+++.+.++-.|.+.+..++.--.+. -+.|++..+++. ..+.|.+||+.|+.+|+-+|.+...
T Consensus 522 ~ell~d~ds~lRy~G~fs~alAy~GT-------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------- 585 (926)
T COG5116 522 NELLYDKDSILRYNGVFSLALAYVGT-------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------- 585 (926)
T ss_pred HHHhcCchHHhhhccHHHHHHHHhcC-------CcchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence 34555566666666665554332211 134667777776 5678899999999999998876544
Q ss_pred ChHHHHHhhc-CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhh
Q 010291 88 ALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI 166 (513)
Q Consensus 88 ~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 166 (513)
.+...+++|. +.++.+|...+.+|+-.|.+..... ++..|-.++.++..-+|+.|+-++..+......+-.-
T Consensus 586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp 658 (926)
T COG5116 586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNP 658 (926)
T ss_pred hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccCh
Confidence 3555566665 4678999999999998886644321 3455666677788889999988888877433332211
Q ss_pred HhcCChHHHHHHhcCCCHHH
Q 010291 167 AHNGGLVPLLKLLDSKNGSL 186 (513)
Q Consensus 167 ~~~~~i~~L~~ll~~~~~~~ 186 (513)
--.+.+..+.+++.+++.+.
T Consensus 659 ~v~~I~k~f~~vI~~Khe~g 678 (926)
T COG5116 659 NVKRIIKKFNRVIVDKHESG 678 (926)
T ss_pred hHHHHHHHHHHHHhhhhHhH
Confidence 12344556666766655443
No 197
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.29 E-value=0.12 Score=43.19 Aligned_cols=145 Identities=19% Similarity=0.174 Sum_probs=96.5
Q ss_pred HHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH
Q 010291 47 LPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124 (513)
Q Consensus 47 i~~Lv~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 124 (513)
+..++..|. ...+++|..+.-++..+- +..++...+ -.-..+-..+...+.+-...+..++..+.-..++....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 445555554 467889999999998884 333333221 23334444555555556677888888887676665555
Q ss_pred HH-hcCChHHHHHHhC--CCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhc-CCCHH-HHHHHHHHHHh
Q 010291 125 IV-QRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD-SKNGS-LQHNAAFALYG 196 (513)
Q Consensus 125 ~~-~~~~i~~L~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~-~~~~a~~~L~~ 196 (513)
+. ..|+++.++.++. .++..++..++.+|..=|.+...|. .+...+++.|-+++. ++++. ++..|+-.|..
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~-~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRT-FISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHH-CCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHH-HHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 54 6889999999998 6788888898988888665554454 445577888999985 44455 67777766654
No 198
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.28 E-value=0.2 Score=52.26 Aligned_cols=189 Identities=12% Similarity=0.072 Sum_probs=123.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH--------HHH----hCCChHHHHHhhcCCChHHHHHHHHHHHHh
Q 010291 47 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK--------EVL----AAGALQPVIGLLSSCCSESQREAALLLGQF 114 (513)
Q Consensus 47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~--------~~~----~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l 114 (513)
...++.+|++ +++-..+..++.-+..+++..+. .+. -..++|.+++.+.+.+...+..-..+|.+.
T Consensus 817 a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshV 894 (1030)
T KOG1967|consen 817 AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSHV 894 (1030)
T ss_pred HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHHH
Confidence 4456666653 45555666666666666554321 111 135788888888877777787778888888
Q ss_pred hcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCC---HHHHHHHH
Q 010291 115 AATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN---GSLQHNAA 191 (513)
Q Consensus 115 ~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~---~~~~~~a~ 191 (513)
...-|...-.---...+|.|++.|.-+|..++..+..++.-+....+.-..-.-...++.++.+-.+.+ ..++..|+
T Consensus 895 l~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~AL 974 (1030)
T KOG1967|consen 895 LTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDAL 974 (1030)
T ss_pred HhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHH
Confidence 765454221112245678888999999999999999999887754433221112234555666655555 56888999
Q ss_pred HHHHhccc-CcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhh
Q 010291 192 FALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAH 270 (513)
Q Consensus 192 ~~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~ 270 (513)
.+|..|.+ -+...-. -+...++..|...|.++..-||+.|..+=.+
T Consensus 975 qcL~aL~~~~P~~~l~---------------------------------~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 975 QCLNALTRRLPTKSLL---------------------------------SFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHHhccCCCcccc---------------------------------cccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 99999987 4432111 1244578888888988888899988876443
No 199
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.23 E-value=0.19 Score=50.50 Aligned_cols=129 Identities=16% Similarity=0.189 Sum_probs=86.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhc
Q 010291 49 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR 128 (513)
Q Consensus 49 ~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 128 (513)
.++..-+ ++...+..|+..+.....+.|+..+. ++..++.+.++++..+|..|...|-.+|.++++....+
T Consensus 27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv--- 97 (556)
T PF05918_consen 27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV--- 97 (556)
T ss_dssp HHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH---
T ss_pred HHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH---
Confidence 3344434 57889999999999999998987665 57889999999999999999999999998877766654
Q ss_pred CChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhc---CCCHHHHHHHHHHHH
Q 010291 129 GAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD---SKNGSLQHNAAFALY 195 (513)
Q Consensus 129 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~~~~~a~~~L~ 195 (513)
...|+++|.++++.-...+-.+|..+...++. +.+..+..-+. .+++.+++.++..|.
T Consensus 98 --aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k-------~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 98 --ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK-------GTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp --HHHHHHHTT---HHHHHHHHHHHHHHHHH-HH-------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred --HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 45899999999887777777777777642221 23334444443 456778888877664
No 200
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=2.3 Score=45.16 Aligned_cols=134 Identities=16% Similarity=0.129 Sum_probs=84.1
Q ss_pred CChhHHHHhhc------c--CCHHHHHHHHHHHHHhhcc---CchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 010291 3 GGIPPLVELLE------F--TDTKVQRAAAGALRTLAFK---NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGN 71 (513)
Q Consensus 3 g~i~~Lv~lL~------~--~~~~~~~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~ 71 (513)
|.++.+++.|. . .++.-+..|++.++++++- ....+.. .+.=.++.+.+.++++-..+|..|+|.++.
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~-mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQ-MEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHH-HHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 45666677775 2 3467788888888888741 1222222 222245666677788888999999999999
Q ss_pred hhcCChhHHHHHHhCCChHHHHHhhc-CCChHHHHHHHHHHHHhhcCCchhhHHHHh--cCChHHHHHHhC
Q 010291 72 LVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQ--RGAVRPLIEMLQ 139 (513)
Q Consensus 72 l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~ 139 (513)
++.-.-..... -..++....+.+. +.+-.|+..|+.+|..+.+..+.....+.. .+.++.|+++.+
T Consensus 489 ~~~~df~d~~~--l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~n 557 (1010)
T KOG1991|consen 489 FSSIDFKDPNN--LSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSN 557 (1010)
T ss_pred HHhccCCChHH--HHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHH
Confidence 98321111111 1234555666666 677889999999999998776654332221 344555555554
No 201
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.17 E-value=0.17 Score=51.96 Aligned_cols=139 Identities=17% Similarity=0.121 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHh-CCChHHHHHhhc
Q 010291 19 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLS 97 (513)
Q Consensus 19 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~ 97 (513)
...+++.++.|++..+...+..+.+..+++.+-.++-..++..+..++.++.||....--....+++ ...++.....+.
T Consensus 558 en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e 637 (748)
T KOG4151|consen 558 ENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLE 637 (748)
T ss_pred HHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHH
Confidence 4567889999999888888888988888888777888889999999999999999875555555655 457777777777
Q ss_pred CCChHHHHHHHHHHHHhhcCCchhhH-HHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010291 98 SCCSESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 157 (513)
Q Consensus 98 ~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 157 (513)
..+......++.++..++.....+.. ..........+..++.+++++++........|+.
T Consensus 638 ~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~ 698 (748)
T KOG4151|consen 638 VADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLF 698 (748)
T ss_pred hhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHH
Confidence 77777778888887767666555544 3334567788889999999999999888888855
No 202
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.13 E-value=0.39 Score=47.25 Aligned_cols=152 Identities=13% Similarity=0.204 Sum_probs=113.5
Q ss_pred hHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCC----HHHHHHHHHHHHHhhcCChhHHH
Q 010291 6 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED----SAIHYEAVGVIGNLVHSSPNIKK 81 (513)
Q Consensus 6 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~----~~v~~~a~~~L~~l~~~~~~~~~ 81 (513)
..+.+.+.+++...+..|...|..++. ++.....++...++..|.+++.+++ .++....++++..+-...- ...
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vsW 163 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VSW 163 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-eee
Confidence 467788899999999999999999998 7888889999999999999998654 3566666666655543211 111
Q ss_pred HHHhCCChHHHHHhhc--CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291 82 EVLAAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 159 (513)
Q Consensus 82 ~~~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~ 159 (513)
..+...++.....+.+ ..+..+...|+..|.++..+++..++.+.+.--+..|+..++..+..++..|...+..+...
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 1222233444444443 24566778899999999988887888888888899999999999999998888888887743
No 203
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.09 E-value=0.85 Score=47.47 Aligned_cols=181 Identities=18% Similarity=0.138 Sum_probs=118.8
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCC
Q 010291 8 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 87 (513)
Q Consensus 8 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 87 (513)
.+..+.++.+.++-.|+..|+.+.+ +.+....+...+++...+..|++.++-+-..|+..+..||.--+ ..
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e-~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~ 802 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIE-KRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------ED 802 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hh
Confidence 3445566778899999999999998 44666777788999999999999999999999998877774322 34
Q ss_pred ChHHHHHh-hcCC---ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccc
Q 010291 88 ALQPVIGL-LSSC---CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 163 (513)
Q Consensus 88 ~i~~L~~l-l~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 163 (513)
+++.+... .+.. .++.+-....++.++...-.+...... ...+..+++..++++...|..++..++++|.--..+
T Consensus 803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 67777763 3321 123333344555555532222111111 145677888888888888999999999998533221
Q ss_pred --hhhHhcCChHHHHHHhc-CCCHHHHHHHHHHHHhcccC
Q 010291 164 --AGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADN 200 (513)
Q Consensus 164 --~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~ 200 (513)
..+. ..+..++.+.. +++..+++.|+..+..+-.+
T Consensus 882 vsd~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 882 VSDFFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred hhHHHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 1121 12333444444 34577888888888877653
No 204
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=94.98 E-value=0.091 Score=48.74 Aligned_cols=88 Identities=24% Similarity=0.257 Sum_probs=63.9
Q ss_pred cccEEEEe-cCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccCHHHHHHHHHHH
Q 010291 345 LSDVTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAA 423 (513)
Q Consensus 345 ~~Dv~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A 423 (513)
..|+.|.. .|..|.+||..++++|.+|..-+..-+. ...+|.-..+-++.|..|++|+|-..-.+..+.-.+++.+.
T Consensus 149 ~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~--~~heI~~~~v~~~~f~~flk~lyl~~na~~~~qynallsi~ 226 (516)
T KOG0511|consen 149 CHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV--QGHEIEAHRVILSAFSPFLKQLYLNTNAEWKDQYNALLSIE 226 (516)
T ss_pred ccchHHHhhccccccHHHHHHHhhhcccCchhhhhcc--ccCchhhhhhhHhhhhHHHHHHHHhhhhhhhhHHHHHHhhh
Confidence 45788776 4677889999999999988654432221 23455555677899999999999874444445557888888
Q ss_pred HHhcHHHHHHH
Q 010291 424 DQYLLEGLKRL 434 (513)
Q Consensus 424 ~~~~~~~l~~~ 434 (513)
.+|+++.+...
T Consensus 227 ~kF~~e~l~~~ 237 (516)
T KOG0511|consen 227 VKFSKEKLSLE 237 (516)
T ss_pred hhccHHHhHHH
Confidence 88888776654
No 205
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.96 E-value=2.6 Score=40.95 Aligned_cols=109 Identities=9% Similarity=0.103 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-C---CCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHH
Q 010291 16 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-S---EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 91 (513)
Q Consensus 16 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 91 (513)
.+.+-..|+..+..+..+.|.....+.+.|.++.+++.+. . ++.++....-.+|+.||-+ ....+.+.+.+.++.
T Consensus 122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~ 200 (379)
T PF06025_consen 122 GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDK 200 (379)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHH
Confidence 3678888999999999988899999999999999998887 3 4677888888899999987 555688888999999
Q ss_pred HHHhhcCCCh-------HHHHHHHHHHHHhhcCCchhhHHH
Q 010291 92 VIGLLSSCCS-------ESQREAALLLGQFAATDSDCKVHI 125 (513)
Q Consensus 92 L~~ll~~~~~-------~~~~~a~~~L~~l~~~~~~~~~~~ 125 (513)
+.+++.+.+. +........+-.|.++.|..+..+
T Consensus 201 ~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i 241 (379)
T PF06025_consen 201 LFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDI 241 (379)
T ss_pred HHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHH
Confidence 9998875321 233334445556666666555443
No 206
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=94.78 E-value=2.3 Score=40.55 Aligned_cols=83 Identities=18% Similarity=0.139 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCC-----ChHHHHHHHHHHHHhhcCCchhhHH-HHhcCCh
Q 010291 58 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-----CSESQREAALLLGQFAATDSDCKVH-IVQRGAV 131 (513)
Q Consensus 58 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~i 131 (513)
+..+...++.||+|+..+++..++...+......+++.+... ..++...-.+.|.-++.-.+..+.. +.+.+++
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 457899999999999999999999999988777777766431 1233333344444444333444443 3456777
Q ss_pred HHHHHHhCC
Q 010291 132 RPLIEMLQS 140 (513)
Q Consensus 132 ~~L~~~l~~ 140 (513)
+.+-+.+.+
T Consensus 190 ~~lt~~led 198 (532)
T KOG4464|consen 190 ELLTNWLED 198 (532)
T ss_pred HHHHHHhhc
Confidence 777777753
No 207
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.76 E-value=0.55 Score=47.74 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=73.1
Q ss_pred CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291 3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 82 (513)
Q Consensus 3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 82 (513)
|.+..+++-..+++..+|.+.+..|..+.. +......-+-.+....+..-+.+..+.||.+|+.+|+.+-.+..+-
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence 445566666778899999999999999987 3333444444556777777778889999999999999997432110
Q ss_pred HHhCCChHHHHHhhcC-CChHHHHHHHHHH
Q 010291 83 VLAAGALQPVIGLLSS-CCSESQREAALLL 111 (513)
Q Consensus 83 ~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L 111 (513)
+..++..+..++.. ++++||+.++..+
T Consensus 161 --e~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 161 --ECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred --cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 13466777777764 6788998765433
No 208
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=94.69 E-value=0.067 Score=43.42 Aligned_cols=98 Identities=15% Similarity=0.135 Sum_probs=74.4
Q ss_pred ccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCC----CCCCCceecCCCCHHHHHHHHHHHhcCccccCHHHHHHHHH
Q 010291 346 SDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLR 421 (513)
Q Consensus 346 ~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~ 421 (513)
.=|.+.|||..|..-|.-|...+.-|-.-|-..-+ .+++.--.+-|=+|..|..+|+|+-.|++-++.-.=..+++
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~eeGvL~ 100 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLSEEGVLE 100 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhhhhccch
Confidence 34778899999999999999888566555533221 22222334445689999999999999999887755567999
Q ss_pred HHHHhcHHHHHHHHHHHHHhcC
Q 010291 422 AADQYLLEGLKRLCEYTIAQDI 443 (513)
Q Consensus 422 ~A~~~~~~~l~~~c~~~l~~~~ 443 (513)
-|++|.++.|.++..+.+.+..
T Consensus 101 EAefyn~~~li~likd~i~dRd 122 (210)
T KOG2715|consen 101 EAEFYNDPSLIQLIKDRIQDRD 122 (210)
T ss_pred hhhccCChHHHHHHHHHHHHHh
Confidence 9999999999999888887753
No 209
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=94.66 E-value=0.69 Score=44.71 Aligned_cols=143 Identities=13% Similarity=0.140 Sum_probs=92.6
Q ss_pred hhHHHHhhcc-CCHHHHHHHHHHHHHhhccCchhHHHHHh--cCCHHHHHHhhcCCCHHHHHHHH-HHHHHhhcCChhHH
Q 010291 5 IPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAV-GVIGNLVHSSPNIK 80 (513)
Q Consensus 5 i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~a~-~~L~~l~~~~~~~~ 80 (513)
+..+++.|.. .++..+..|++.|+.++...+. .+.+ +-+|..+++.-++.++++...|. .++.-++...+..+
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~---~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~ 407 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA---RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC 407 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhchH---hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH
Confidence 3456667765 6788999999999999984332 2222 12455566666655555555444 45666666555432
Q ss_pred HHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010291 81 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158 (513)
Q Consensus 81 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 158 (513)
|..+..++-+.|......++..+..++..-+.......-..+.|.+++...+....+|+.|+.+|..+..
T Consensus 408 --------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 408 --------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred --------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 3344555555666666667777777774433222222335788999999999999999999999998863
No 210
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.63 E-value=2.2 Score=41.50 Aligned_cols=132 Identities=16% Similarity=0.169 Sum_probs=96.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChh---HHHHHHhCCChHHHHHhhcCC-------ChHHHHHHHHHHHHhhcCCc
Q 010291 50 LILMLRSEDSAIHYEAVGVIGNLVHSSPN---IKKEVLAAGALQPVIGLLSSC-------CSESQREAALLLGQFAATDS 119 (513)
Q Consensus 50 Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~g~i~~L~~ll~~~-------~~~~~~~a~~~L~~l~~~~~ 119 (513)
+..+++..+.+-|-.|+....+++.+.+- +++.+++.-|.+.+-+++.+. +.-.+.-+...|...|+..+
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 55666677778888899899999876442 466788888888888888752 22335667778888886533
Q ss_pred hh-hHHHHhcCChHHHHHHhCCC-CHH------HHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCC
Q 010291 120 DC-KVHIVQRGAVRPLIEMLQSP-DVQ------LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 183 (513)
Q Consensus 120 ~~-~~~~~~~~~i~~L~~~l~~~-~~~------~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~ 183 (513)
-. ...++ ..||.|...+... |++ +.+.+..+|..++..+.+...++..|+++.+.++-.-++
T Consensus 96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~ 165 (698)
T KOG2611|consen 96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPD 165 (698)
T ss_pred hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCC
Confidence 11 12233 3688888888753 333 778999999999999899999999999999987765444
No 211
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.58 E-value=0.3 Score=42.33 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=73.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhh-cCChhHHHHHHhCCChHHHHHhhcC---------CChHHHHHHHHHHHHhhc
Q 010291 47 LPTLILMLRSEDSAIHYEAVGVIGNLV-HSSPNIKKEVLAAGALQPVIGLLSS---------CCSESQREAALLLGQFAA 116 (513)
Q Consensus 47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~g~i~~L~~ll~~---------~~~~~~~~a~~~L~~l~~ 116 (513)
...+++.+.+..... ..+..|.-.. ..+....+.+++.||+..|+.+|.. .+.+....++.+|..+..
T Consensus 68 p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n 145 (187)
T PF06371_consen 68 PEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN 145 (187)
T ss_dssp HHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc
Confidence 445667776443322 2222222222 2334567788889999999998863 345788889999999986
Q ss_pred CCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010291 117 TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 157 (513)
Q Consensus 117 ~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 157 (513)
...+....+...+.+..++..+.+++..++..++..|..+|
T Consensus 146 ~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 146 TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 55444444556889999999999999999999999999887
No 212
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=94.55 E-value=1.6 Score=40.09 Aligned_cols=206 Identities=13% Similarity=0.119 Sum_probs=143.2
Q ss_pred HHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH----HH-hcCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 010291 81 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH----IV-QRGAVRPLIEMLQSPDVQLREMSAFALGR 155 (513)
Q Consensus 81 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~----~~-~~~~i~~L~~~l~~~~~~~~~~a~~~L~~ 155 (513)
+.+.+.|.+..++..+..-+.+.+..++.+..|+-..+-+.+.. +. ....+..|+.--.. .+++.-.+...+..
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRE 151 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHH
Confidence 45667899999999999999999999999998887544333322 21 23344555544221 47777777788888
Q ss_pred HhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc-CcchHHHHHhhcCcccccchhhhhhhhHHHHHHHH
Q 010291 156 LAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL 234 (513)
Q Consensus 156 l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~ 234 (513)
..+...-.+.+..+..+.....++..++-++...|..+...+.. +.....++....
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n----------------------- 208 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRN----------------------- 208 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhC-----------------------
Confidence 77777777788888888888888888888888888887776654 333333332211
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcc----eeeecCCchHHHHhhhcCCCcchhhhHHHHHH
Q 010291 235 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR----TIFIDGGGLELLLGLLGSTNPKQQLDGAVALF 310 (513)
Q Consensus 235 ~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~----~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 310 (513)
++.-+.+.--.++++.+.-.+..+...++.+-.+..+. +.+.+...+..+..+|++++..+|.+|-....
T Consensus 209 ------~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFK 282 (342)
T KOG1566|consen 209 ------YDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFK 282 (342)
T ss_pred ------hhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHH
Confidence 11112222445777888889999999999987654432 34444466788999999999999999988777
Q ss_pred Hhhhcc
Q 010291 311 KLANKA 316 (513)
Q Consensus 311 ~l~~~~ 316 (513)
-+..++
T Consensus 283 vfvAnp 288 (342)
T KOG1566|consen 283 VFVANP 288 (342)
T ss_pred HHhcCC
Confidence 766553
No 213
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.45 E-value=0.37 Score=51.76 Aligned_cols=140 Identities=17% Similarity=0.177 Sum_probs=108.9
Q ss_pred CHHHHHHhhc----CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhc-CCChHHHHHHHHHHHHhhcCCch
Q 010291 46 ALPTLILMLR----SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSD 120 (513)
Q Consensus 46 ~i~~Lv~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~ 120 (513)
..|.++...+ .++|+++..|.-+|+.+.--+.+.+.. .++.|...++ ++++.+|.+++.+++-++...|.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 4556666664 367999999999999997654443332 5788999998 68899999999999999877665
Q ss_pred hhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 199 (513)
Q Consensus 121 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 199 (513)
..+ .+-+.|...+.++++.+|+.|..+|.+|-.++ .+.-.|-+..+..++.++++.+..-|=.....|+.
T Consensus 995 lie-----~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 995 LIE-----PWTEHLYRRLRDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ccc-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 433 35567888999999999999999999997643 23345888899999999999988877766666664
No 214
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.44 E-value=3.8 Score=39.73 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=59.1
Q ss_pred hhHHHHhhcc-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC-CCHHHHHH-HHHHHHHhhcCChhHHH
Q 010291 5 IPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYE-AVGVIGNLVHSSPNIKK 81 (513)
Q Consensus 5 i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~-a~~~L~~l~~~~~~~~~ 81 (513)
+..+++-+++ ....+|..++-.|..-+. ++..+..+...|.++.++..+.+ ++..+... ++.++.-++.+.. .-.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence 3445555553 346788888888888887 89999999999999999999963 33323333 3444444554432 223
Q ss_pred HHHhCCChHHHHHhhc
Q 010291 82 EVLAAGALQPVIGLLS 97 (513)
Q Consensus 82 ~~~~~g~i~~L~~ll~ 97 (513)
.+.+.+....++.++.
T Consensus 101 l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhchhHHHHHHHHhc
Confidence 3334455666677776
No 215
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=94.41 E-value=0.17 Score=52.72 Aligned_cols=149 Identities=17% Similarity=0.146 Sum_probs=107.3
Q ss_pred CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 010291 3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 80 (513)
Q Consensus 3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 80 (513)
.++|.+++..+......+.+=+.+|.+...+-|. ..+.. ....|.|++.|.-++..+|..+..++.-+....+...
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 4577888887766666777777888887765444 22221 2457788888888999999999999988876655543
Q ss_pred HHHHhCCChHHHHHhhcCCC---hHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHH
Q 010291 81 KEVLAAGALQPVIGLLSSCC---SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG 154 (513)
Q Consensus 81 ~~~~~~g~i~~L~~ll~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~ 154 (513)
..-+ ...++.++.+-.+.+ ..+|..|..+|..|.+.-|...-.-....++..|.+.|.++..-+|+.|..+=.
T Consensus 945 t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 945 TEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred hHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 2221 235666666655554 578999999999999866665555566778999999999988889988876533
No 216
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.38 E-value=0.35 Score=40.48 Aligned_cols=147 Identities=21% Similarity=0.300 Sum_probs=97.5
Q ss_pred CChhHHHHhhcc--CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 010291 3 GGIPPLVELLEF--TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 80 (513)
Q Consensus 3 g~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 80 (513)
..+..++..|.. ..+++|..+.-++..+- +..+....+ -+-+.+-.++..++.+-...++.++..+-...++..
T Consensus 3 ~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~ 78 (157)
T PF11701_consen 3 DELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVG 78 (157)
T ss_dssp CCCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHH
Confidence 345667776654 56789999999998884 223333222 223344445554455567778888888887777765
Q ss_pred HHHH-hCCChHHHHHhhc--CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC-CCHH-HHHHHHHHHHH
Q 010291 81 KEVL-AAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQ-LREMSAFALGR 155 (513)
Q Consensus 81 ~~~~-~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~-~~~~a~~~L~~ 155 (513)
..++ ..|..+.++.+.. ..+..++..++.+|..-| .+...+ ..+...+++.|-...+. ++.. ++..|+-+|..
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~~r-~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC-IDKSCR-TFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHHHH-HCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-ccHHHH-HHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 5555 5688888888888 677888888888888776 435544 44555789999999964 4555 67777666543
No 217
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.37 E-value=1.4 Score=46.92 Aligned_cols=185 Identities=11% Similarity=0.065 Sum_probs=125.3
Q ss_pred hHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291 6 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVL 84 (513)
Q Consensus 6 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 84 (513)
+.+-..+.++++..|.+|+..+...... +.........|.+..++.... +.|..+...|+.+|..++...... ..-.
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e-~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~ 333 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEE-AKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRKY 333 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhc-cccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHHH
Confidence 3445556778999999999999988873 331111122233444444333 678889999999999998654443 2223
Q ss_pred hCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccc-
Q 010291 85 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ- 163 (513)
Q Consensus 85 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~- 163 (513)
..++.+.++..+......++..+..++...+...+. ....+.++..+++.+|..+..+...+..........
T Consensus 334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~ 406 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT 406 (815)
T ss_pred HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence 356788888888888888887777777666542221 235678889999999999988777776665443321
Q ss_pred -hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291 164 -AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 199 (513)
Q Consensus 164 -~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 199 (513)
..-.-.+.++.++....+.+..++.+|..+++.+..
T Consensus 407 ~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred cchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 111112456667788888889999999999887765
No 218
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.34 E-value=0.34 Score=48.07 Aligned_cols=111 Identities=16% Similarity=0.179 Sum_probs=82.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH-------------HHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHH
Q 010291 47 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI-------------KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 113 (513)
Q Consensus 47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------------~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~ 113 (513)
+..|+++|.+ +++...++..++-+..+.+.. |+.++. ..+|.|++..+..+.+.+.....+|.+
T Consensus 273 ~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~~~k~~yL~ALs~ 349 (415)
T PF12460_consen 273 LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADDEIKSNYLTALSH 349 (415)
T ss_pred HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence 5566666654 778889999999998874432 222221 356777777777777788888899999
Q ss_pred hhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcc
Q 010291 114 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 160 (513)
Q Consensus 114 l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 160 (513)
+..+-|...-.-.-...+|.+++.|..+|.+++..+..+|..+..+.
T Consensus 350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 350 LLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 98776654333333568899999999999999999999999998755
No 219
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.26 E-value=0.33 Score=34.28 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCC
Q 010291 20 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 87 (513)
Q Consensus 20 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 87 (513)
.+.|++++++++. ++.....+.+.++++.++++.. ++...+|-.|..+|+-++.. .+..+.+.+.|
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence 5689999999997 5666666667899999999998 67789999999999999866 55556555544
No 220
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.23 E-value=0.58 Score=50.38 Aligned_cols=218 Identities=14% Similarity=0.118 Sum_probs=125.0
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhHHHHHHhC--CChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHH
Q 010291 56 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP 133 (513)
Q Consensus 56 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 133 (513)
+.+..+|..+-+.|..++.. +.......+. .+...|..-+++.....+...+.+|..+....+..-..++.. .++.
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k-~I~E 742 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK-LIPE 742 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHH
Confidence 44788999999999999876 3332221111 233444445555566677777778877775545222233333 3444
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcC------ChHHHHHHhcCC----CHHHHHHHHHHHHhcccCcch
Q 010291 134 LIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG------GLVPLLKLLDSK----NGSLQHNAAFALYGLADNEDN 203 (513)
Q Consensus 134 L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~------~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~~~~~ 203 (513)
++-.+++.+...++++..+|..++.. ....+.| .+...+..+..+ .......-+-++..+..+
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~i----~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e--- 815 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGAI----QSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE--- 815 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHHH----HhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH---
Confidence 44444888999999999999999840 0111111 233333333322 111111112222222211
Q ss_pred HHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHhhcchhhhHHHHHhhccCC-CCcc
Q 010291 204 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH----GRVLNHLLYLMRVAEKGVQRRVALALAHLCSP-DDQR 278 (513)
Q Consensus 204 ~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~-~~~~ 278 (513)
.....+ .+++..+..+|.+..++++..|++.+.-++.. ++..
T Consensus 816 ---------------------------------~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~ 862 (1176)
T KOG1248|consen 816 ---------------------------------FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEEC 862 (1176)
T ss_pred ---------------------------------HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 111112 23455566677778999999999999988764 4333
Q ss_pred eeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291 279 TIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 315 (513)
Q Consensus 279 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 315 (513)
..-.....++.+..+.++..-.++.++-..+..|.+.
T Consensus 863 l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 863 LSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred HhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 2222334678888888877778887777777777654
No 221
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=94.22 E-value=0.041 Score=51.12 Aligned_cols=141 Identities=18% Similarity=0.187 Sum_probs=111.9
Q ss_pred ccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccC--HHHHHHHHHHH
Q 010291 346 SDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVT--LDIAQDLLRAA 423 (513)
Q Consensus 346 ~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~--~~~~~~ll~~A 423 (513)
.+.++......+++|+.++...|+.|..+....-..+....+..-..+...+..+..++|.+ .+-. ......++.+.
T Consensus 27 ~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~ 105 (319)
T KOG1778|consen 27 DVEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALS 105 (319)
T ss_pred chhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhh
Confidence 34455556678999999999999999988865522233445667778889999999999988 3322 23456677777
Q ss_pred HHhcHHHHHHHHHHHHHh-cCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhh
Q 010291 424 DQYLLEGLKRLCEYTIAQ-DISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNL 487 (513)
Q Consensus 424 ~~~~~~~l~~~c~~~l~~-~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l 487 (513)
..|.++..+..|...+.. .++..++...+..+..|....|...+...+...|....+++.....
T Consensus 106 ~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~ 170 (319)
T KOG1778|consen 106 HVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAY 170 (319)
T ss_pred hhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceee
Confidence 899999999999888877 5788899999999999999999999999999999998886655443
No 222
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.01 E-value=0.17 Score=51.18 Aligned_cols=183 Identities=16% Similarity=0.179 Sum_probs=125.8
Q ss_pred CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291 3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 82 (513)
Q Consensus 3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 82 (513)
+.+|.|++++++.+..+|..-+..+-+... .....+++..+.|.+..-+.+.++.+|+.++.++..|+.- .-..
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k---L~~~ 403 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK---LSKR 403 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh---hchh
Confidence 578999999999999999877766666654 4556677788899999999999999999999998888742 1122
Q ss_pred HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc
Q 010291 83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 162 (513)
Q Consensus 83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 162 (513)
.+....+..+..+-.+++..++.+..-+|+.+........ .+.-...++...++++-+..|..+.++++......+.
T Consensus 404 ~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~ 480 (690)
T KOG1243|consen 404 NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ 480 (690)
T ss_pred hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccccch
Confidence 3333355666666666778889888888888875432222 2222345566677787777888888887776543333
Q ss_pred chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHh
Q 010291 163 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYG 196 (513)
Q Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 196 (513)
... ....++.+..+.-+++..++..|-.++..
T Consensus 481 ~~v--a~kIlp~l~pl~vd~e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 481 SEV--ANKILPSLVPLTVDPEKTVRDTAEKAIRQ 512 (690)
T ss_pred hhh--hhhccccccccccCcccchhhHHHHHHHH
Confidence 221 22456667777777777777766665553
No 223
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=93.95 E-value=9.6 Score=40.80 Aligned_cols=123 Identities=17% Similarity=0.225 Sum_probs=82.7
Q ss_pred HHhcCCHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhc----CCC----hHHHHHH
Q 010291 41 IVECNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS----SCC----SESQREA 107 (513)
Q Consensus 41 i~~~g~i~~Lv~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~----~~~----~~~~~~a 107 (513)
+.+.|++..+++++.+ .........+..|...+.- +.+|+.+++.|+++.|+..+. .+. .++.+..
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 3457899999998874 3345666677777777755 888999999999999998875 323 4666666
Q ss_pred HHHHHHhhcCCchhhH----HHH--------hcCChHHHHHHhCCC----CHHHHHHHHHHHHHHhhccccch
Q 010291 108 ALLLGQFAATDSDCKV----HIV--------QRGAVRPLIEMLQSP----DVQLREMSAFALGRLAQDMHNQA 164 (513)
Q Consensus 108 ~~~L~~l~~~~~~~~~----~~~--------~~~~i~~L~~~l~~~----~~~~~~~a~~~L~~l~~~~~~~~ 164 (513)
..++..+......... ... ....+..|++.+.++ ++.+....+++|-+|+.+.....
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m 264 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKM 264 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHH
Confidence 6666555422111000 000 122367777777754 68899999999999998776644
No 224
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.88 E-value=1.2 Score=44.22 Aligned_cols=185 Identities=20% Similarity=0.200 Sum_probs=112.2
Q ss_pred hHHHHhh-ccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhh-cCCCHHHHHHHHHHHHHhh----c-CChh
Q 010291 6 PPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLV----H-SSPN 78 (513)
Q Consensus 6 ~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~~L~~l~----~-~~~~ 78 (513)
..++.+. +..++..+..+++.+..++..-+... . -.+.+..+...+ ...++..+..++..+.-++ . +++.
T Consensus 192 ~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~ 268 (415)
T PF12460_consen 192 QSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--D-LDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPL 268 (415)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--h-HHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCch
Confidence 3444443 34557888888888888875311111 1 112233333333 2334444555544443333 2 2221
Q ss_pred HHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchh--------hHHHHhc----CChHHHHHHhCCCCHHHH
Q 010291 79 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC--------KVHIVQR----GAVRPLIEMLQSPDVQLR 146 (513)
Q Consensus 79 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--------~~~~~~~----~~i~~L~~~l~~~~~~~~ 146 (513)
. ...+..|+.++.+ +++...++.++.-+..+.+.. ...+... ..+|.|++..+..+...+
T Consensus 269 ~------~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k 340 (415)
T PF12460_consen 269 A------TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIK 340 (415)
T ss_pred H------HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhH
Confidence 1 1245667777766 777888888888887652321 2222222 346677777777776788
Q ss_pred HHHHHHHHHHhhccccchhhHh-cCChHHHHHHhcCCCHHHHHHHHHHHHhcccCc
Q 010291 147 EMSAFALGRLAQDMHNQAGIAH-NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 201 (513)
Q Consensus 147 ~~a~~~L~~l~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 201 (513)
.+...+|.++..+-+..-..-+ ...+|.|++-|..++..++..++.+|..+..+.
T Consensus 341 ~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 341 SNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 8899999999876654333333 345666888899999999999999999988755
No 225
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=93.76 E-value=2.1 Score=44.97 Aligned_cols=180 Identities=14% Similarity=0.065 Sum_probs=118.5
Q ss_pred ccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHH
Q 010291 13 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 91 (513)
Q Consensus 13 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 91 (513)
.+..|....+|.+++...+.....+...+ . ......+..+. +..+-++..|+++++..++. .. -.-...+++..
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~--~v-l~~~~p~ild~ 534 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLL-Q-HFLNATVNALTMDVPPPVKISAVRAFCGYCKV--KV-LLSLQPMILDG 534 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHH-H-HHHHHHHHhhccCCCCchhHHHHHHHHhccCc--ee-ccccchHHHHH
Confidence 34567777788888887776322222211 1 12334444444 56677888888888877732 11 11123467788
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC--CCCHHHHHHHHHHHHHHhhccccchhhHhc
Q 010291 92 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQDMHNQAGIAHN 169 (513)
Q Consensus 92 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 169 (513)
|.++......++......+|+..+..+++... ..++.+.|..+.++. ++||.+...+-.++..++....+...+ .+
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m-~e 612 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPM-QE 612 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcch-HH
Confidence 88888888899999999999999988887543 445567777777664 458888888888888887644444333 33
Q ss_pred CChHHHHHHhcCCC----HHHHHHHHHHHHhccc
Q 010291 170 GGLVPLLKLLDSKN----GSLQHNAAFALYGLAD 199 (513)
Q Consensus 170 ~~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~ 199 (513)
..++.++..+..+. .....-++..|..+.+
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr 646 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLR 646 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHh
Confidence 57888999988766 4555566666665555
No 226
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=93.72 E-value=4.3 Score=38.82 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=113.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhc-CChhHHHHHHhC-C-ChHHHHHhhcCC-----C--------hHHHHHHHHH
Q 010291 47 LPTLILMLRSEDSAIHYEAVGVIGNLVH-SSPNIKKEVLAA-G-ALQPVIGLLSSC-----C--------SESQREAALL 110 (513)
Q Consensus 47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~-g-~i~~L~~ll~~~-----~--------~~~~~~a~~~ 110 (513)
++.+-+.|.+..+.+...+++.|..++. +.......+... + -.+.+..++... . +++|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7777788888888888899999999998 665555555543 3 334555565321 1 2788777665
Q ss_pred HHH-hhcCCchhhHHHH-hcCChHHHHHHhCCCCHHHHHHHHHHHHH-Hhhcccc----chhhHhcCChHHHHHHhcCCC
Q 010291 111 LGQ-FAATDSDCKVHIV-QRGAVRPLIEMLQSPDVQLREMSAFALGR-LAQDMHN----QAGIAHNGGLVPLLKLLDSKN 183 (513)
Q Consensus 111 L~~-l~~~~~~~~~~~~-~~~~i~~L~~~l~~~~~~~~~~a~~~L~~-l~~~~~~----~~~~~~~~~i~~L~~ll~~~~ 183 (513)
+.. +...++..+..+. +.+.+..+.+-|..+++++....+.+|.. +..++.. +..+..+..+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 544 4455565665555 56678999999999999999999999985 4444322 344556677888888887777
Q ss_pred H----HHHHHHHHHHHhcccCcchHHHH
Q 010291 184 G----SLQHNAAFALYGLADNEDNVADF 207 (513)
Q Consensus 184 ~----~~~~~a~~~L~~l~~~~~~~~~~ 207 (513)
+ .+...+-..|..+|.++...-.+
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~Gv~f 245 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKHGVCF 245 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCccccc
Confidence 7 78888888999999877654333
No 227
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.65 E-value=0.66 Score=40.19 Aligned_cols=146 Identities=16% Similarity=0.189 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCC-hhHHHHHHhCCChHHHH
Q 010291 20 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVI 93 (513)
Q Consensus 20 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~ 93 (513)
..+|+..|.-+++ +|+.+..+.+..+--.+-+.|.. ....+|..+++.++.+..+. +..-..+....++|..+
T Consensus 117 vcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 4567777777777 79999988888754445556552 23578999999999998754 45556677788999999
Q ss_pred HhhcCCChHHHHHHHHHHHHhhcCCchhhHHH------H-hcCChHHHHH-HhCCCCHHHHHHHHHHHHHHhhccccchh
Q 010291 94 GLLSSCCSESQREAALLLGQFAATDSDCKVHI------V-QRGAVRPLIE-MLQSPDVQLREMSAFALGRLAQDMHNQAG 165 (513)
Q Consensus 94 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~------~-~~~~i~~L~~-~l~~~~~~~~~~a~~~L~~l~~~~~~~~~ 165 (513)
++++.+..-.+.-|+.++..+..++...+-.. . -...+..++. +.+.+...+.+++.++-..|+.++..|..
T Consensus 196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~l 275 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARAL 275 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHH
Confidence 99998888788888888888875544322111 1 0122333333 33445667888888888888877766654
Q ss_pred h
Q 010291 166 I 166 (513)
Q Consensus 166 ~ 166 (513)
+
T Consensus 276 L 276 (315)
T COG5209 276 L 276 (315)
T ss_pred H
Confidence 4
No 228
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.65 E-value=3.2 Score=45.11 Aligned_cols=178 Identities=15% Similarity=0.146 Sum_probs=102.5
Q ss_pred ccCCHHHHHHHHHHHHHhhccCchhHHHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChH
Q 010291 13 EFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 90 (513)
Q Consensus 13 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 90 (513)
++.+..+|..+.+.|..++.. +.......+ ..+...+.+-+++.....+...+.+|..|....+..-..++..-+.+
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E 742 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE 742 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345788999999999999984 332222221 12233444555556677888888888888765442222222222333
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhc--C--Cc-hhhHHHHhcCChHHHHHHhCCC--CHHHHHHH--HHHHHHHhhccc
Q 010291 91 PVIGLLSSCCSESQREAALLLGQFAA--T--DS-DCKVHIVQRGAVRPLIEMLQSP--DVQLREMS--AFALGRLAQDMH 161 (513)
Q Consensus 91 ~L~~ll~~~~~~~~~~a~~~L~~l~~--~--~~-~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a--~~~L~~l~~~~~ 161 (513)
.++.+ ...+...++.+-.+|..++. . ++ +.+ ....++.++..+..+ ....+..+ +-++..+..
T Consensus 743 vIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~----~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~--- 814 (1176)
T KOG1248|consen 743 VILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEP----ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ--- 814 (1176)
T ss_pred HHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccc----hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH---
Confidence 44444 77778888888888888872 0 00 001 112455566666543 22333222 333444332
Q ss_pred cchhhHhc----CChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291 162 NQAGIAHN----GGLVPLLKLLDSKNGSLQHNAAFALYGLAD 199 (513)
Q Consensus 162 ~~~~~~~~----~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 199 (513)
....+.+. +.++.+..++.+.+++++..|+..+..++.
T Consensus 815 e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~ 856 (1176)
T KOG1248|consen 815 EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVY 856 (1176)
T ss_pred HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 22222332 345556667788999999999999998875
No 229
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=1.2 Score=46.55 Aligned_cols=221 Identities=15% Similarity=0.083 Sum_probs=132.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcC
Q 010291 50 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG 129 (513)
Q Consensus 50 Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 129 (513)
.+..+.++.+.++..++..|..+.... .-...+...+++...+..+++.++-+--.|...+..||..-++ .
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~ 802 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------D 802 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------h
Confidence 334445666778999999999999764 3346666778999999999999999999999988888855443 4
Q ss_pred ChHHHHH-HhCCC---CHHHHHHHHHHHHHHhhcccc-chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcch-
Q 010291 130 AVRPLIE-MLQSP---DVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN- 203 (513)
Q Consensus 130 ~i~~L~~-~l~~~---~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~- 203 (513)
.+|.+.. ..++. .++.+-..-.++.++...-.. -... ..-.+...+...++++...+..++..++++|.-...
T Consensus 803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y-~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKY-KAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHH-HHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 6667766 33322 123343444555555531111 0011 113344566777777777788899999998862211
Q ss_pred HHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-hhcchhhhHHHHHhhccCCCCcce-ee
Q 010291 204 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDDQRT-IF 281 (513)
Q Consensus 204 ~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~-~l 281 (513)
... +-..++..++.+.+. ++..+|.+|+..+..+-.+..... .+
T Consensus 882 vsd----------------------------------~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpi 927 (982)
T KOG4653|consen 882 VSD----------------------------------FFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPI 927 (982)
T ss_pred hhH----------------------------------HHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHH
Confidence 000 011234444555554 567788999988888755422110 00
Q ss_pred ---ecCCchHHHHhhhcC-CCcchhhhHHHHHHHhhh
Q 010291 282 ---IDGGGLELLLGLLGS-TNPKQQLDGAVALFKLAN 314 (513)
Q Consensus 282 ---~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~ 314 (513)
.--.....+...... +++.++..++.++..+-.
T Consensus 928 lr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a 964 (982)
T KOG4653|consen 928 LRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQA 964 (982)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 011233344444443 555667777777666543
No 230
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=93.51 E-value=6 Score=36.52 Aligned_cols=200 Identities=14% Similarity=0.142 Sum_probs=134.1
Q ss_pred CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhc--CCHHHHHHhhc-CC-CHHHHHHHHHHHHHhhcCCh
Q 010291 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTLILMLR-SE-DSAIHYEAVGVIGNLVHSSP 77 (513)
Q Consensus 2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~Lv~lL~-~~-~~~v~~~a~~~L~~l~~~~~ 77 (513)
+|.+..+++.+...+-+.+..++.+..++-+..-+.+...++. .-.+.+-.+++ .. .+++-..+-..|...... +
T Consensus 78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirh-e 156 (342)
T KOG1566|consen 78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRH-E 156 (342)
T ss_pred CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhh-H
Confidence 5677888888888787888888888887765433333222211 11222333333 22 255555554455555444 6
Q ss_pred hHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCC----hHHHHHHhCCCCHHHHHHHHHHH
Q 010291 78 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA----VRPLIEMLQSPDVQLREMSAFAL 153 (513)
Q Consensus 78 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~----i~~L~~~l~~~~~~~~~~a~~~L 153 (513)
...+.+....-.......+..+..++...|..+...+..........+...+. .+.--.++.+.+.-.+..+...|
T Consensus 157 ~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kll 236 (342)
T KOG1566|consen 157 FLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLL 236 (342)
T ss_pred HHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhH
Confidence 66677777778888888888888888888888887776443333333333222 23355677888888999999999
Q ss_pred HHHhhccccchhhH----hcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcc
Q 010291 154 GRLAQDMHNQAGIA----HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED 202 (513)
Q Consensus 154 ~~l~~~~~~~~~~~----~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 202 (513)
+.+-.+..+...+. ....+..++.+|++++..+|..|-....-...++.
T Consensus 237 g~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 237 GELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 99998887755443 34678889999999999999999999988877553
No 231
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.23 E-value=1.1 Score=45.74 Aligned_cols=98 Identities=18% Similarity=0.137 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhc
Q 010291 101 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 180 (513)
Q Consensus 101 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~ 180 (513)
..+...++..+..+-..+++. .++ .|.+..++.-..+++..||..++..|.-+.........-+-.+....+..-+.
T Consensus 60 dRIl~fla~fv~sl~q~d~e~--DlV-~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~ 136 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQLDKEE--DLV-AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLK 136 (892)
T ss_pred HHHHHHHHHHHHhhhccCchh--hHH-HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHh
Confidence 456666666666665443332 122 36677777777888999999999999999875555555555566777777788
Q ss_pred CCCHHHHHHHHHHHHhcccCc
Q 010291 181 SKNGSLQHNAAFALYGLADNE 201 (513)
Q Consensus 181 ~~~~~~~~~a~~~L~~l~~~~ 201 (513)
+..+.++..|+.+|..+-.++
T Consensus 137 Drep~VRiqAv~aLsrlQ~d~ 157 (892)
T KOG2025|consen 137 DREPNVRIQAVLALSRLQGDP 157 (892)
T ss_pred ccCchHHHHHHHHHHHHhcCC
Confidence 888999999999999998533
No 232
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.17 E-value=0.53 Score=40.82 Aligned_cols=106 Identities=17% Similarity=0.137 Sum_probs=70.9
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCHHHHHHhhcC---------CCHHHHHHHHHHHHHhhcCC
Q 010291 7 PLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRS---------EDSAIHYEAVGVIGNLVHSS 76 (513)
Q Consensus 7 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~---------~~~~v~~~a~~~L~~l~~~~ 76 (513)
.+++.+.+..... ..+..|....+. +......+++.||+..|+++|.. .+......++.||..+...
T Consensus 70 ~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~- 146 (187)
T PF06371_consen 70 WYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNT- 146 (187)
T ss_dssp HHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHcc-
Confidence 3455554443221 333333333332 33567778889999999998862 3457888899999999865
Q ss_pred hhHHHHHH-hCCChHHHHHhhcCCChHHHHHHHHHHHHhh
Q 010291 77 PNIKKEVL-AAGALQPVIGLLSSCCSESQREAALLLGQFA 115 (513)
Q Consensus 77 ~~~~~~~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 115 (513)
......++ ..+++..|+..+.+.+..++..++..|..+|
T Consensus 147 ~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 147 KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 44455555 4689999999999999999999999998876
No 233
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.13 E-value=0.76 Score=35.63 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=64.7
Q ss_pred ecCeeehhhHHHHhhcCHHHHHhccCCCCCCCCCceecCCCCHHHHHHHHHHHhcCcccc--------------------
Q 010291 352 VEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDV-------------------- 411 (513)
Q Consensus 352 ~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~-------------------- 411 (513)
.+|+.|.+.+.+ |.+|-..+.|+.... ...-.+..+++...+|..+++|+-...-..
T Consensus 9 ~dge~F~vd~~i-AerSiLikN~l~d~~--~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr 85 (158)
T COG5201 9 IDGEIFRVDENI-AERSILIKNMLCDST--ACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDR 85 (158)
T ss_pred cCCcEEEehHHH-HHHHHHHHHHhcccc--ccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHH
Confidence 367788887764 668999999885321 112346778999999999999997653321
Q ss_pred -----CHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcCC
Q 010291 412 -----TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDIS 444 (513)
Q Consensus 412 -----~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~ 444 (513)
..+.+.++.-+|+|+.++.|...|.+.+.+.+.
T Consensus 86 ~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemir 123 (158)
T COG5201 86 FFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIR 123 (158)
T ss_pred HHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence 224567788888888888888888887766553
No 234
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=93.08 E-value=0.26 Score=35.53 Aligned_cols=50 Identities=32% Similarity=0.393 Sum_probs=35.1
Q ss_pred cCHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcC---ChhhHHHHHHHHHhcCc
Q 010291 411 VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI---SLENVSSMYELSEAFHA 460 (513)
Q Consensus 411 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~---~~~n~~~~~~~a~~~~~ 460 (513)
++.+.+.+++.+|++|++++|...|.+.+...+ +++....++.+...+..
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~ 63 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTP 63 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSH
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCH
Confidence 466789999999999999999999999887765 55556666655555443
No 235
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.00 E-value=0.4 Score=35.81 Aligned_cols=72 Identities=19% Similarity=0.168 Sum_probs=57.0
Q ss_pred hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh
Q 010291 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 78 (513)
Q Consensus 5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~ 78 (513)
+...+..++++.+.+|-.++..|+++..... .......+++..+...|+++++-+-..|+.+|..++...+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3556777889999999999999999998544 22222345677888899999999999999999999976554
No 236
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.99 E-value=0.92 Score=44.18 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=84.7
Q ss_pred ccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhC---CC
Q 010291 13 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA---GA 88 (513)
Q Consensus 13 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~ 88 (513)
.+++..++..|++.|++.+.+-|+-....... .+..++.-|. ..+.+|+..++.+|..+...-.. .-+.. .+
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~---~~l~~~~l~i 343 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN---DDLESYLLNI 343 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh---cchhhhchhH
Confidence 45677899999999999999755544443333 3445554444 55789999999999888743221 11222 23
Q ss_pred hHHHHHhhcCCChHHHHHHHHHHHHhhcCCc-hhhHHHH--hcCChHHHHHHhCCCCHHHHHHHHHHHH
Q 010291 89 LQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIV--QRGAVRPLIEMLQSPDVQLREMSAFALG 154 (513)
Q Consensus 89 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~--~~~~i~~L~~~l~~~~~~~~~~a~~~L~ 154 (513)
.-.+..+.++.+++.+..+...++.|+-... ..+..+. -.+...+++-.+.+++|.+...+-..+.
T Consensus 344 alrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~ 412 (533)
T KOG2032|consen 344 ALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELR 412 (533)
T ss_pred HHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHH
Confidence 3445667788899999988887777762211 1122222 1233445666778888876654444333
No 237
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=92.93 E-value=6.8 Score=35.31 Aligned_cols=138 Identities=23% Similarity=0.220 Sum_probs=90.7
Q ss_pred hhHHHH-hhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291 5 IPPLVE-LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 83 (513)
Q Consensus 5 i~~Lv~-lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 83 (513)
++.|+. +-+..++..+...+..|..++.++..+... ++..+..+...+..+.+..+.+.+..+...++...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 345555 335678999999999999999854122222 24555566666667777778888888876544321
Q ss_pred HhCCChHHHHHhh--------c--CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHh-CCCCHHHHHHHHHH
Q 010291 84 LAAGALQPVIGLL--------S--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFA 152 (513)
Q Consensus 84 ~~~g~i~~L~~ll--------~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~ 152 (513)
+.+..++..+ . +...+.....+.++..+|...|+.- ...++.+..++ ++.++.++..++.+
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHH
Confidence 2333333330 1 1234555666778888987777622 23577888888 77888899999999
Q ss_pred HHHHhh
Q 010291 153 LGRLAQ 158 (513)
Q Consensus 153 L~~l~~ 158 (513)
|..+|.
T Consensus 146 l~~Lc~ 151 (234)
T PF12530_consen 146 LAPLCE 151 (234)
T ss_pred HHHHHH
Confidence 999993
No 238
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=92.86 E-value=0.36 Score=34.08 Aligned_cols=67 Identities=10% Similarity=0.143 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCC-CHHHHHHHHHHHHhcccCcchHHHHHhhcC
Q 010291 146 REMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK-NGSLQHNAAFALYGLADNEDNVADFIRVGG 212 (513)
Q Consensus 146 ~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~ 212 (513)
.+.++|++++++..+.....+.+.+.++.++++..+. ...++--+..+|+-++...+....+.+.|.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence 4678999999998888777777788999999998754 478888889999999988888777766654
No 239
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.84 E-value=1 Score=45.82 Aligned_cols=103 Identities=18% Similarity=0.178 Sum_probs=54.3
Q ss_pred hhHHHHhhc-cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291 5 IPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 83 (513)
Q Consensus 5 i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 83 (513)
+|.++..+. +++|.+|.+|+..++.++-.-.. .+++ .-..|.+-|.+.+..||+.++.++..+.... ++
T Consensus 935 lpllIt~mek~p~P~IR~NaVvglgD~~vcfN~----~~de-~t~yLyrrL~De~~~V~rtclmti~fLilag-----q~ 1004 (1128)
T COG5098 935 LPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT----TADE-HTHYLYRRLGDEDADVRRTCLMTIHFLILAG-----QL 1004 (1128)
T ss_pred HHHHHHHHhhCCCcceeccceeeccccceehhh----hhHH-HHHHHHHHhcchhhHHHHHHHHHHHHHHHcc-----ce
Confidence 344555553 55666666666555555431111 1111 1334555555666666666666666654321 12
Q ss_pred HhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcC
Q 010291 84 LAAGALQPVIGLLSSCCSESQREAALLLGQFAAT 117 (513)
Q Consensus 84 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 117 (513)
.-.|-++.+..+|.+++.++...|-..+..++..
T Consensus 1005 KVKGqlg~ma~~L~deda~Isdmar~fft~~a~K 1038 (1128)
T COG5098 1005 KVKGQLGKMALLLTDEDAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred eeccchhhhHhhccCCcchHHHHHHHHHHHHHhc
Confidence 2245556666666666666666666666666543
No 240
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=92.75 E-value=1.6 Score=46.09 Aligned_cols=170 Identities=15% Similarity=0.175 Sum_probs=107.9
Q ss_pred HHHHhhcCCchhhHHHHhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHhhccccchhhHhcCChH--HHHHHhcCCCH-H
Q 010291 110 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLV--PLLKLLDSKNG-S 185 (513)
Q Consensus 110 ~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~--~L~~ll~~~~~-~ 185 (513)
+|++++...++....+.+.|++..+...++. .+.+++..+...+.|++...+.+........+. .+-.++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 5667787788888889999999999999986 467899999999999997766554433322222 33345544444 7
Q ss_pred HHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHH-HHHHHH--------HHhhhhhHHHHHHHHHH-
Q 010291 186 LQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK-TLKRLE--------EKIHGRVLNHLLYLMRV- 255 (513)
Q Consensus 186 ~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~l~~Lv~lL~~- 255 (513)
....++..|+.+..+.+....- ..+.|+.. ..+.+. .....-+.+.+..++..
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~-----------------~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s 636 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTEC-----------------VFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLS 636 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccc-----------------cchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhccc
Confidence 7788999999887654320000 00011100 000110 01111122224444554
Q ss_pred hhcchhhhHHHHHhhccCC-CCcceeeecCCchHHHHhhhcC
Q 010291 256 AEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGS 296 (513)
Q Consensus 256 ~~~~v~~~a~~aL~~l~~~-~~~~~~l~~~~~i~~L~~ll~~ 296 (513)
..+..+..|++++.+++.. ++.++.+.+.|+++.+.+.-..
T Consensus 637 ~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (699)
T KOG3665|consen 637 KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVL 678 (699)
T ss_pred CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchh
Confidence 6778899999999999864 5577778888888888777654
No 241
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.66 E-value=2.2 Score=42.21 Aligned_cols=151 Identities=15% Similarity=0.153 Sum_probs=107.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCCh----HHHHHHHHHHHHhhcCCchhh
Q 010291 47 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS----ESQREAALLLGQFAATDSDCK 122 (513)
Q Consensus 47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~----~~~~~a~~~L~~l~~~~~~~~ 122 (513)
...+.+.+.+++..-+..|...|..++.+ ....+.++...++..|..++++.+. ++...++.++..+....- ..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs 162 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS 162 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence 45677788888888888899999999987 5666788888999999999987653 566667777776654322 11
Q ss_pred HHHHhcCChHHHHHHhCC--CCHHHHHHHHHHHHHHhhcccc-chhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291 123 VHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 199 (513)
Q Consensus 123 ~~~~~~~~i~~L~~~l~~--~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 199 (513)
...+...++.....+.+. .+..+-..|+..|.++..++.. +..+.+.-.+..|+..++..+..++..|...+..+-.
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 111222233334444432 3556778899999999977764 5566667778889999999999998887777766643
No 242
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.59 E-value=2 Score=42.72 Aligned_cols=96 Identities=21% Similarity=0.277 Sum_probs=51.0
Q ss_pred CChHHHHHh-hcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHhhccccch
Q 010291 87 GALQPVIGL-LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQA 164 (513)
Q Consensus 87 g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~ 164 (513)
|++..++.. .++.+.++++.|+-+|+-+|..++. .+...+++|.+ .++.+|...+.+|+--|.+...+.
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~ 621 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV 621 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence 345555554 4555666666666666666644433 23344444443 356666666666665554443332
Q ss_pred hhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Q 010291 165 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 197 (513)
Q Consensus 165 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l 197 (513)
+++.|-.++.+.++-++..|+-+++.+
T Consensus 622 ------a~diL~~L~~D~~dfVRQ~AmIa~~mI 648 (926)
T COG5116 622 ------ATDILEALMYDTNDFVRQSAMIAVGMI 648 (926)
T ss_pred ------HHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 234455555555555666555555544
No 243
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.56 E-value=0.9 Score=49.01 Aligned_cols=159 Identities=23% Similarity=0.282 Sum_probs=116.4
Q ss_pred ChhHHHHhhc----cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChh
Q 010291 4 GIPPLVELLE----FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPN 78 (513)
Q Consensus 4 ~i~~Lv~lL~----~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~ 78 (513)
..|.+++..+ .++|++|..|.-+|+.+..=+.+.... -.+.|+..|. ++++.+|.+++-+++-++...++
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 3456666663 357999999999999997644443332 4788999998 88999999999999999876555
Q ss_pred HHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010291 79 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158 (513)
Q Consensus 79 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 158 (513)
.-+. .-+.|..-|.+.++.+|+.|..+|.+|...+ .+--.|.+..+..++.+++++++..|-.....|+.
T Consensus 995 lie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 995 LIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 4222 3455677788899999999999999997432 33346999999999999999999888877777764
Q ss_pred ccccchhhHhcCChHHHHHHhcCC
Q 010291 159 DMHNQAGIAHNGGLVPLLKLLDSK 182 (513)
Q Consensus 159 ~~~~~~~~~~~~~i~~L~~ll~~~ 182 (513)
.... +. +.+|.++.-|.++
T Consensus 1065 k~n~---iy--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1065 KGNT---IY--NLLPDILSRLSNG 1083 (1251)
T ss_pred cccc---hh--hhchHHHHhhccC
Confidence 3311 11 3455555555554
No 244
>PRK14707 hypothetical protein; Provisional
Probab=92.46 E-value=16 Score=42.88 Aligned_cols=295 Identities=17% Similarity=0.099 Sum_probs=144.2
Q ss_pred ccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHH
Q 010291 13 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 91 (513)
Q Consensus 13 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 91 (513)
+-++..+...|+..|..-..++++.+..+-..| +...++-|. =++..+...++..|..-..+..+.++.+--.+ |..
T Consensus 384 KWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~-van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~-va~ 461 (2710)
T PRK14707 384 KWPDTPVCAAAASALAEHVVDDLELRKGLDPQG-VSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPIN-VTQ 461 (2710)
T ss_pred cCCCchHHHHHHHHHHHHhccChhhhhhcchhh-HHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHH-HHH
Confidence 457778888888888876666788888776665 445555554 46666666666666655555566665554444 333
Q ss_pred HHHhhc-CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCC-HHHHHHHHHHHHHHhhccccchhhHhc
Q 010291 92 VIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQDMHNQAGIAHN 169 (513)
Q Consensus 92 L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~ 169 (513)
.++.++ -++..+-..++..|..-...+++.++.+--.++...|-.+-+-++ +...+.+.+.-..+.....-.+.+-..
T Consensus 462 ~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~~l~~~~~~~ 541 (2710)
T PRK14707 462 ALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDELQLRKAFDAH 541 (2710)
T ss_pred HHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccchhhhhhhhhH
Confidence 344443 366666666666665544455665555544444444444444454 334445555555554333222222222
Q ss_pred CChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHH---------
Q 010291 170 GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK--------- 240 (513)
Q Consensus 170 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~--------- 240 (513)
+....+-.+-+.++....+.+...|..+.........-+....|..+++...--.....|...+......+
T Consensus 542 ~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~~~~lr~~ 621 (2710)
T PRK14707 542 QVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALSKWPDTAVCAEAVNALAERLVDEPDLRKE 621 (2710)
T ss_pred HHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhccCCCcHHHHHHHHHHHHHhccChhhhhh
Confidence 22222223333444555556666665543333222222233333333322111122233433322222222
Q ss_pred hhhhhHHHHHHHHHH-hhcchhhhHHHHHhh-ccCCCCcceeeecCCchHHHHhhhcC-CCcchhhhHHHHHH
Q 010291 241 IHGRVLNHLLYLMRV-AEKGVQRRVALALAH-LCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALF 310 (513)
Q Consensus 241 ~~~~~l~~Lv~lL~~-~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~ 310 (513)
.+..-+..++.-|.. ++......++..|.. +......+..+ +...+..+++-++. ++.+....++..|.
T Consensus 622 l~~q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~~f-naQ~vAn~LNALSKWPe~e~Cr~Aa~~LA 693 (2710)
T PRK14707 622 LDPVDVTNVLNALSKWPGTEVCAEVARLLAGRLVGDRLLRKTF-NSLDVANALNALSKWPDTPVCAAAAGGMA 693 (2710)
T ss_pred ccHHHHHHHHhhhhcCCCchHHHHHHHHHHHHhhhchhhHhhc-chHHHHHHHHhhhcCCCchHHHHHHHHHH
Confidence 223334455555544 445555555555433 23333323222 23345555555554 55555555555553
No 245
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.39 E-value=4.5 Score=42.59 Aligned_cols=218 Identities=16% Similarity=0.157 Sum_probs=122.9
Q ss_pred hhHHHHHHhCCChHHHHHhhcCCC------hHHHHHHHHHHHHhhcCCc-------hhhHHHHhcCChHHHHHHhCC---
Q 010291 77 PNIKKEVLAAGALQPVIGLLSSCC------SESQREAALLLGQFAATDS-------DCKVHIVQRGAVRPLIEMLQS--- 140 (513)
Q Consensus 77 ~~~~~~~~~~g~i~~L~~ll~~~~------~~~~~~a~~~L~~l~~~~~-------~~~~~~~~~~~i~~L~~~l~~--- 140 (513)
+..++.-...|+....+.-+...+ .+-.+..+|-+..+....+ +....+...+++..++.+..-
T Consensus 536 e~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~ 615 (1516)
T KOG1832|consen 536 ESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPV 615 (1516)
T ss_pred HhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCcc
Confidence 334455555566665555443322 1223444454444443333 223445666777777777753
Q ss_pred -----CCHHHHHHHHHHHHHHhhccccchhhHhc------C--ChHHHHHHhc----CCCHHHHHHHHHHHHhcccCc-c
Q 010291 141 -----PDVQLREMSAFALGRLAQDMHNQAGIAHN------G--GLVPLLKLLD----SKNGSLQHNAAFALYGLADNE-D 202 (513)
Q Consensus 141 -----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~--~i~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~-~ 202 (513)
+..++..+|..+|+-+..-+..|..++.. . ++..++.... -.+++++..|+.+|.|+...+ +
T Consensus 616 w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~ 695 (1516)
T KOG1832|consen 616 WRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPT 695 (1516)
T ss_pred ccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCC
Confidence 23467788888888888878777776542 1 3444433322 126899999999999987644 5
Q ss_pred hHHHHHh-hcCcccccchhhh-hhhhHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHhh-----cchhhhHHHHHhhccCC
Q 010291 203 NVADFIR-VGGVQKLQDGEFI-VQATKDCVAKTLKRL-EEKIHGRVLNHLLYLMRVAE-----KGVQRRVALALAHLCSP 274 (513)
Q Consensus 203 ~~~~~~~-~g~i~~L~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~l~~Lv~lL~~~~-----~~v~~~a~~aL~~l~~~ 274 (513)
++..... .|.-.-= ...+. ......-+...+++. ..+..++.|..|+.+|+-.. ..+|..||.+|.-|+++
T Consensus 696 ~r~s~i~~v~S~~g~-~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~ 774 (1516)
T KOG1832|consen 696 TRPSTIVAVGSQSGD-RRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARD 774 (1516)
T ss_pred cchhhhhhccccCCC-ccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccC
Confidence 5444332 1110000 00000 011111222333333 34566789999999998743 35799999999999999
Q ss_pred CCcceeeecCCch--HHHHhhhc
Q 010291 275 DDQRTIFIDGGGL--ELLLGLLG 295 (513)
Q Consensus 275 ~~~~~~l~~~~~i--~~L~~ll~ 295 (513)
+..|+++.+.-.+ ..+..++.
T Consensus 775 ~tVrQIltKLpLvt~~~~q~lm~ 797 (1516)
T KOG1832|consen 775 DTVRQILTKLPLVTNERAQILMA 797 (1516)
T ss_pred cHHHHHHHhCccccchHHHHHhh
Confidence 9977765544333 23444444
No 246
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.27 E-value=3.5 Score=46.04 Aligned_cols=146 Identities=9% Similarity=0.120 Sum_probs=97.2
Q ss_pred ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 83 (513)
Q Consensus 4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 83 (513)
.+..++..|..+...+|..|+++|..+..-++.... ...+-..+-.-+.++...||+.|+..++......++.-...
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 355677778888899999999999999975443221 11222334455567788999999999998876666543333
Q ss_pred HhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcc
Q 010291 84 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 160 (513)
Q Consensus 84 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 160 (513)
-..+.+-+.+....||..+...++.+|...|...... ..+..++....++...+++.+..++.++...+
T Consensus 894 -----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~---~~cakmlrRv~DEEg~I~kLv~etf~klWF~p 962 (1692)
T KOG1020|consen 894 -----YDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV---DMCAKMLRRVNDEEGNIKKLVRETFLKLWFTP 962 (1692)
T ss_pred -----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH---HHHHHHHHHhccchhHHHHHHHHHHHHHhccC
Confidence 2345555566778899999999999997766543211 12223333333444448888888888887544
No 247
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.16 E-value=2.6 Score=46.90 Aligned_cols=142 Identities=16% Similarity=0.212 Sum_probs=99.4
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH
Q 010291 45 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124 (513)
Q Consensus 45 g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 124 (513)
+.+..++..|..+...+|..|++||.++..-.+... ....+-..+-.-+.+....||+.|+..++...-..++....
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 346777888888889999999999999987655432 11223334445556778899999999999887666654443
Q ss_pred HHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhc---CCCHHHHHHHHHHHHhccc
Q 010291 125 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD---SKNGSLQHNAAFALYGLAD 199 (513)
Q Consensus 125 ~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~~~~~a~~~L~~l~~ 199 (513)
....+..-+.++...||..++..++.+|...++-..+. ..+.++++ +....++.-+..++.++..
T Consensus 893 -----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~-----~~cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 893 -----YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV-----DMCAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred -----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH-----HHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 34577888888899999999999999997666543332 23344443 3334477777777777765
No 248
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=92.10 E-value=5.3 Score=34.18 Aligned_cols=140 Identities=16% Similarity=0.196 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHhhcc-Cch----hHHHHH------hcCCHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhC
Q 010291 19 VQRAAAGALRTLAFK-NDE----NKNQIV------ECNALPTLIL-MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 86 (513)
Q Consensus 19 ~~~~a~~~L~~l~~~-~~~----~~~~i~------~~g~i~~Lv~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 86 (513)
+|..|+.+|..+++. ++. ....+. ..+.-+.|+. ++.++++.+|..|+.+|..+-.++...-...-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 678888999988874 221 111222 1224445554 4458899999999999999987754432222211
Q ss_pred C----Ch---------------HHHHHhhcCC-ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHH----HHHhCCCC
Q 010291 87 G----AL---------------QPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL----IEMLQSPD 142 (513)
Q Consensus 87 g----~i---------------~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L----~~~l~~~~ 142 (513)
. .. ..|+..+..+ +..+......+|..+....|..+-. .|.++.+ ..++.+.|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~---~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLP---PGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcC---HhHHHHHHHHHHHHHhcCC
Confidence 1 11 3344444443 5677888999999999888876542 3555444 45556788
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 010291 143 VQLREMSAFALGRLAQDMH 161 (513)
Q Consensus 143 ~~~~~~a~~~L~~l~~~~~ 161 (513)
+.++..+..+++.+....+
T Consensus 159 ~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSVQP 177 (182)
T ss_pred CcHHHHHHHHHHHHHcCCC
Confidence 8999999999888875443
No 249
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.92 E-value=4 Score=41.77 Aligned_cols=129 Identities=16% Similarity=0.127 Sum_probs=95.1
Q ss_pred CCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhc-CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHH
Q 010291 57 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 135 (513)
Q Consensus 57 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 135 (513)
+++.++..|.-+|..+---+.+.. ..-+|.++..++ +++|.+|.+|+..|+.+........+. .-..|.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLy 977 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLY 977 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHH
Confidence 678999999888887743222221 235788888888 788999999999998887443332222 344677
Q ss_pred HHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291 136 EMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 199 (513)
Q Consensus 136 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 199 (513)
..|.+.+..++..|..++.+|......+ -.|-+..+..+|.++|..+...|-..+..++.
T Consensus 978 rrL~De~~~V~rtclmti~fLilagq~K----VKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 978 RRLGDEDADVRRTCLMTIHFLILAGQLK----VKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHcccee----eccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 8888889999999999999997533222 24777788999999998888877777777775
No 250
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=91.82 E-value=11 Score=36.75 Aligned_cols=171 Identities=16% Similarity=0.137 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHHHHh-hccCchhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhC--CChHH
Q 010291 16 DTKVQRAAAGALRTL-AFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--GALQP 91 (513)
Q Consensus 16 ~~~~~~~a~~~L~~l-~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~ 91 (513)
..+.+..|+.-|..+ +.++....++..+. ++..+++.|.+ .+...++.|++.|..++.+.+. .+.+. -++..
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~-iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~---~l~DstE~ai~K 375 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAE-ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA---RLFDSTEIAICK 375 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHH-HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH---hhhchHHHHHHH
Confidence 345667777655544 44444444443332 45677788886 7888999999999999976433 22222 24444
Q ss_pred HHHhhcCCChHHHHHHH-HHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhh--Hh
Q 010291 92 VIGLLSSCCSESQREAA-LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI--AH 168 (513)
Q Consensus 92 L~~ll~~~~~~~~~~a~-~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~ 168 (513)
+++.-.+.+.++...|. .++.-+++..|... +..+..++...|......++..+..++..-.. +.+ +-
T Consensus 376 ~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~-EeL~~ll 446 (516)
T KOG2956|consen 376 VLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERLSA-EELLNLL 446 (516)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCH-HHHHHhh
Confidence 55555555555554444 45666666666532 33344444445555655666667776642221 122 12
Q ss_pred cCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291 169 NGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 199 (513)
Q Consensus 169 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 199 (513)
....|.+++-..+.+..++..++.+|..+..
T Consensus 447 ~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 447 PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 3556668888888888999998888876653
No 251
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.76 E-value=8.2 Score=38.84 Aligned_cols=107 Identities=20% Similarity=0.159 Sum_probs=71.5
Q ss_pred CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 81 (513)
Q Consensus 2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 81 (513)
+|.+..+++-+.+++..+|.+++..|+.++. .-.-.....-.|.+..|..-+-+..+.||..|+.+|+.+-....+- +
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne-e 167 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE-E 167 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh-H
Confidence 3455667777788899999999999998886 3333334445567777777777788999999999999986432221 1
Q ss_pred HHHhCCChHHHHHhhc-CCChHHHHHHHHHHHHhhcC
Q 010291 82 EVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAAT 117 (513)
Q Consensus 82 ~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~ 117 (513)
......++.++. ++..++++.| |.|+..+
T Consensus 168 ----n~~~n~l~~~vqnDPS~EVRr~a---llni~vd 197 (885)
T COG5218 168 ----NRIVNLLKDIVQNDPSDEVRRLA---LLNISVD 197 (885)
T ss_pred ----HHHHHHHHHHHhcCcHHHHHHHH---HHHeeeC
Confidence 113345555554 3556787754 4666533
No 252
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=91.54 E-value=6.6 Score=33.98 Aligned_cols=143 Identities=16% Similarity=0.175 Sum_probs=86.0
Q ss_pred hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 84 (513)
Q Consensus 5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 84 (513)
++.++++..+++..++..|+..+..+.+..--+.. ..+|.++.+..++++.++..|...+..+....+..-..-.
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~ 84 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRY 84 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 46677777889999999999999988764222222 2588999999999999999999999999876555433322
Q ss_pred hCCChHHHHHhhc---CCCh-HH---HHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC--------CHHHHHHH
Q 010291 85 AAGALQPVIGLLS---SCCS-ES---QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--------DVQLREMS 149 (513)
Q Consensus 85 ~~g~i~~L~~ll~---~~~~-~~---~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--------~~~~~~~a 149 (513)
..| +..-..+-. .+.. .. .......+..+...+...|.. ++..+++.+... .+.-....
T Consensus 85 ~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~-----Fl~~l~k~f~~~~~~~~~~~~~~~l~~~ 158 (187)
T PF12830_consen 85 SEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRK-----FLKSLLKQFDFDLTKLSSESSPSDLDFL 158 (187)
T ss_pred HHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHH-----HHHHHHHHHHhhccccccccchhHHHHH
Confidence 222 222222211 1111 01 334444555555544444444 344566655432 23344555
Q ss_pred HHHHHHHhh
Q 010291 150 AFALGRLAQ 158 (513)
Q Consensus 150 ~~~L~~l~~ 158 (513)
..+..||+.
T Consensus 159 ~Fla~nLA~ 167 (187)
T PF12830_consen 159 LFLAENLAT 167 (187)
T ss_pred HHHHHHHhc
Confidence 666666654
No 253
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.30 E-value=1.6 Score=39.99 Aligned_cols=140 Identities=17% Similarity=0.187 Sum_probs=98.2
Q ss_pred hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 84 (513)
Q Consensus 5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 84 (513)
+...+..|.+.++.....++..|..++..+++....+... +|-.+++-+++....|-+.|+.++..+...-.. .+.
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslKNlRS~VsraA~~t~~difs~ln~---~i~ 165 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN---SID 165 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 4456677788899999999999999988777665555544 566778888888889999999999999753222 222
Q ss_pred hCCChHHHHHhh-cC---CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010291 85 AAGALQPVIGLL-SS---CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 157 (513)
Q Consensus 85 ~~g~i~~L~~ll-~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 157 (513)
+ .+..++..| .. ++.-+++.|-.+|..+...-... .+++.|+..+...++.++..++.+..+..
T Consensus 166 ~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 166 Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 2 233333333 22 34568889999999997443332 24677888888888888888877666653
No 254
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=91.10 E-value=9.9 Score=33.25 Aligned_cols=155 Identities=16% Similarity=0.148 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCC-----ChHHHHHHHHHHHHhhcCCc-hhhHHHHhcCChHHHH
Q 010291 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-----CSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLI 135 (513)
Q Consensus 62 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~ 135 (513)
...|+..|.-++.+ ++.+..+++..+.-.+-.+|... ...+|-.+..+++.+...+. .....+....++|.++
T Consensus 117 vcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 34566666666655 88888888887766666666542 34577888999999985544 4455667788999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHhhccccchhhHh--------cCChHHH-HHHhcCCCHHHHHHHHHHHHhcccCcchHHH
Q 010291 136 EMLQSPDVQLREMSAFALGRLAQDMHNQAGIAH--------NGGLVPL-LKLLDSKNGSLQHNAAFALYGLADNEDNVAD 206 (513)
Q Consensus 136 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--------~~~i~~L-~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 206 (513)
+++..+++--+..++.++..+..++.+-..+.. ...+..+ .++.+.+......+++++-..||.++..+.
T Consensus 196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~- 274 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARA- 274 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHH-
Confidence 999998888888888888888776655433221 1122232 344556678888999999999998776544
Q ss_pred HHhhcCcccccc
Q 010291 207 FIRVGGVQKLQD 218 (513)
Q Consensus 207 ~~~~g~i~~L~~ 218 (513)
+.....-..|.+
T Consensus 275 lL~~~lP~~Lrd 286 (315)
T COG5209 275 LLSSKLPDGLRD 286 (315)
T ss_pred HHhccCCccccc
Confidence 334333334433
No 255
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.38 E-value=1 Score=33.60 Aligned_cols=84 Identities=14% Similarity=0.099 Sum_probs=62.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHH
Q 010291 47 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 126 (513)
Q Consensus 47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 126 (513)
....+..|.++.+-+|..++..|+++..... .......+++..+...++++++-+--+|...|..|+...+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~------ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD------ 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH------
Confidence 3456667788888899999999999997655 12222245777888889999999999999999999966654
Q ss_pred hcCChHHHHHHhCC
Q 010291 127 QRGAVRPLIEMLQS 140 (513)
Q Consensus 127 ~~~~i~~L~~~l~~ 140 (513)
.+++.|++...+
T Consensus 77 --~vl~~L~~~y~~ 88 (92)
T PF10363_consen 77 --EVLPILLDEYAD 88 (92)
T ss_pred --HHHHHHHHHHhC
Confidence 245566655443
No 256
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=90.23 E-value=0.15 Score=46.92 Aligned_cols=54 Identities=22% Similarity=0.405 Sum_probs=45.2
Q ss_pred cCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCch-hhHhhhhhhHHHH
Q 010291 442 DISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRP-GHSNLIQRIIPEI 495 (513)
Q Consensus 442 ~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~-~f~~l~~~~~~~l 495 (513)
.++++|++.++.-|+...++.|.+.|+.|+..|+.+|+.++ ++.-++.+++..|
T Consensus 71 ~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RL 125 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRL 125 (317)
T ss_pred cCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHH
Confidence 48999999999999999999999999999999999999876 5555654443333
No 257
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=89.58 E-value=8.8 Score=39.50 Aligned_cols=190 Identities=14% Similarity=0.096 Sum_probs=108.2
Q ss_pred HhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccc
Q 010291 84 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 163 (513)
Q Consensus 84 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 163 (513)
++.++++.|++++...|..+|-.-+.-+-+.. +......++..++|.+..-+.+.++.+++.++.++..|+..=..+
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i---~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI---DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHh---hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 55678999999999999888865554444443 333445667788999999999999999999998888887311111
Q ss_pred hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhh
Q 010291 164 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 243 (513)
Q Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (513)
......+..+.++-.+.+..++.+..-+++.++.+..... +.+++
T Consensus 404 --~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL------------------------------ 448 (690)
T KOG1243|consen 404 --NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVL------------------------------ 448 (690)
T ss_pred --hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hcccc------------------------------
Confidence 1111122233333334456677777777777765422111 11111
Q ss_pred hhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291 244 RVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 315 (513)
Q Consensus 244 ~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 315 (513)
......-++++-...|.++.+++......-+... +....+|.+.-+.-+++..+|..|-.++......
T Consensus 449 --~~aftralkdpf~paR~a~v~~l~at~~~~~~~~--va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~k 516 (690)
T KOG1243|consen 449 --ASAFTRALKDPFVPARKAGVLALAATQEYFDQSE--VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEK 516 (690)
T ss_pred --chhhhhhhcCCCCCchhhhhHHHhhcccccchhh--hhhhccccccccccCcccchhhHHHHHHHHHHhh
Confidence 1111223444445556666666655443322111 1223455566666666666666666665554433
No 258
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.50 E-value=7.5 Score=41.57 Aligned_cols=156 Identities=19% Similarity=0.158 Sum_probs=93.5
Q ss_pred HHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc------C--CCHHHHHHHHHHHHHhhcC--ChhHHHHHHhCCChH
Q 010291 21 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLR------S--EDSAIHYEAVGVIGNLVHS--SPNIKKEVLAAGALQ 90 (513)
Q Consensus 21 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~------~--~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~ 90 (513)
.+|...+..++... .++. -.|.++.+++.|. . .++.-...|++++++++.- ....-+..++.=.++
T Consensus 390 ~Aa~~~l~~~~~KR--~ke~--l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~ 465 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKR--GKET--LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVN 465 (1010)
T ss_pred HHHHHHHHHHHHhc--chhh--hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHH
Confidence 34556666665431 1111 1245666777776 1 3466677888888888721 011112233333556
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC-CCCHHHHHHHHHHHHHHhhccccchhhHh-
Q 010291 91 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIAH- 168 (513)
Q Consensus 91 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~- 168 (513)
.+...+.++.--+|..|||+++.+++.+-.....+. .++....+.|. +++..|+..|+-+|..+..+.+....-+.
T Consensus 466 hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~ 543 (1010)
T KOG1991|consen 466 HVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSA 543 (1010)
T ss_pred HhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhh
Confidence 666677888889999999999999844333222222 35667777777 67788999999999999876654422222
Q ss_pred --cCChHHHHHHhcCC
Q 010291 169 --NGGLVPLLKLLDSK 182 (513)
Q Consensus 169 --~~~i~~L~~ll~~~ 182 (513)
.+.++.|+++.+.-
T Consensus 544 hvp~~mq~lL~L~ne~ 559 (1010)
T KOG1991|consen 544 HVPPIMQELLKLSNEV 559 (1010)
T ss_pred hhhHHHHHHHHHHHhc
Confidence 23344455555443
No 259
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=89.06 E-value=5.8 Score=40.88 Aligned_cols=137 Identities=18% Similarity=0.125 Sum_probs=86.1
Q ss_pred hcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHh-cCCCHHHHHHHHHHHHhcccCcchHH
Q 010291 127 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVA 205 (513)
Q Consensus 127 ~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~ 205 (513)
...+++.|...+++.+..+++.++..+..++..-+ ...+....++.+..+. .+.+..++.+++-+++.+...-+
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD--- 461 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD--- 461 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH---
Confidence 34567777777888888888888888888775333 2334444555555553 34456777777777776662111
Q ss_pred HHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCC
Q 010291 206 DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGG 285 (513)
Q Consensus 206 ~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~ 285 (513)
...--+.+..+....+..++.+......+..++.........+....
T Consensus 462 ---------------------------------~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~ 508 (700)
T KOG2137|consen 462 ---------------------------------KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAEN 508 (700)
T ss_pred ---------------------------------HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhh
Confidence 11111223444444555788888888888888876555446667778
Q ss_pred chHHHHhhhcCCCcch
Q 010291 286 GLELLLGLLGSTNPKQ 301 (513)
Q Consensus 286 ~i~~L~~ll~~~~~~v 301 (513)
++|.+..+...+.-..
T Consensus 509 VlPlli~ls~~~~L~~ 524 (700)
T KOG2137|consen 509 VLPLLIPLSVAPSLNG 524 (700)
T ss_pred hhhhhhhhhhcccccH
Confidence 8888888877654333
No 260
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.94 E-value=3.3 Score=38.06 Aligned_cols=141 Identities=15% Similarity=0.227 Sum_probs=95.7
Q ss_pred ChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhH
Q 010291 88 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIA 167 (513)
Q Consensus 88 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 167 (513)
++...+..|.+.+++....++..+..|+...++....+.. ..+-.+++-++.....+-..|+.++..+...-.+...-
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~- 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ- 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3455666777888888888888899888666654443332 35667778888888889999999999987543332211
Q ss_pred hcCChHHHHHHh----cCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhh
Q 010291 168 HNGGLVPLLKLL----DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 243 (513)
Q Consensus 168 ~~~~i~~L~~ll----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (513)
.++.++..| ..++.-+++.|-.+|..+..+... .
T Consensus 167 ---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp---------------------------------------~ 204 (334)
T KOG2933|consen 167 ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP---------------------------------------Q 204 (334)
T ss_pred ---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh---------------------------------------H
Confidence 233333333 233455778888888877764432 2
Q ss_pred hhHHHHHHHHHHhhcchhhhHHHHHhhcc
Q 010291 244 RVLNHLLYLMRVAEKGVQRRVALALAHLC 272 (513)
Q Consensus 244 ~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~ 272 (513)
.+++.|...+++.++.++..++.+..+..
T Consensus 205 ~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 205 KLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 35777888888988888888887776664
No 261
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=88.73 E-value=4.4 Score=33.99 Aligned_cols=144 Identities=17% Similarity=0.148 Sum_probs=78.5
Q ss_pred CHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH
Q 010291 46 ALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124 (513)
Q Consensus 46 ~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 124 (513)
.++.|+++|+. .+..+|.+++++||.|..=+|...+.+... .+.-. -...+........ .+. +.....+.
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~~~l---~~~--~~~~~~ee 81 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTDISL---PMM--GISPSSEE 81 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchhhHH---hhc--cCCCchHH
Confidence 46677888884 468999999999999976555543322111 11000 0011111111111 111 11111222
Q ss_pred HHhcCChHHHHHHhCCCCH-HHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 010291 125 IVQRGAVRPLIEMLQSPDV-QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 198 (513)
Q Consensus 125 ~~~~~~i~~L~~~l~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 198 (513)
..-.-++..|+..|+++.- .-...++.++.++......+..-.-...++.++..++..++..++....-|+.|.
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3333467888999987632 3344677777777744333332222356777888888777777777666666543
No 262
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=88.73 E-value=1.5 Score=38.69 Aligned_cols=83 Identities=22% Similarity=0.249 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHhcC-------CHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHH-HHHHhCCC
Q 010291 18 KVQRAAAGALRTLAFKNDENKNQIVECN-------ALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIK-KEVLAAGA 88 (513)
Q Consensus 18 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g-------~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~ 88 (513)
.-|.-|+++|.+++- .+.|...+...+ .+..|+++|. .+++..|+.|+-.|.+++..++... ....+.+.
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 358899999999997 566666655443 4556666666 5789999999999999998776654 55557789
Q ss_pred hHHHHHhhcCCCh
Q 010291 89 LQPVIGLLSSCCS 101 (513)
Q Consensus 89 i~~L~~ll~~~~~ 101 (513)
|..|+.++++.+.
T Consensus 218 i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 218 ISHLIAFIEDAEQ 230 (257)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999986544
No 263
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=88.12 E-value=9.8 Score=40.12 Aligned_cols=102 Identities=23% Similarity=0.171 Sum_probs=60.6
Q ss_pred hHHHHHhhcC----CChHHHHHHHHHHHHhhcCCchh---------hHHHHhcCChHHHHHHhC----CCCHHHHHHHHH
Q 010291 89 LQPVIGLLSS----CCSESQREAALLLGQFAATDSDC---------KVHIVQRGAVRPLIEMLQ----SPDVQLREMSAF 151 (513)
Q Consensus 89 i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~---------~~~~~~~~~i~~L~~~l~----~~~~~~~~~a~~ 151 (513)
+..+..++.. ..+.++..|..+++.+....... ........+++.+...+. ..+.+-+..++.
T Consensus 433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 512 (618)
T PF01347_consen 433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK 512 (618)
T ss_dssp HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 4445555553 35667777887777776321111 111223345666666665 456778888999
Q ss_pred HHHHHhhccccchhhHhcCChHHHHHHhcCC---CHHHHHHHHHHHHhcccC
Q 010291 152 ALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK---NGSLQHNAAFALYGLADN 200 (513)
Q Consensus 152 ~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~ 200 (513)
+|+|+.. ...++.+..++... +..++..|++++..++..
T Consensus 513 aLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 513 ALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH 554 (618)
T ss_dssp HHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT
T ss_pred HhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc
Confidence 9999842 13455677777665 577888999999987653
No 264
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.07 E-value=5 Score=40.27 Aligned_cols=96 Identities=18% Similarity=0.127 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCC
Q 010291 103 SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK 182 (513)
Q Consensus 103 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~ 182 (513)
+.......+......+|+. ..++ .|.+..++.-+.+++..++..++..|+-+...-..-....-.|.+..|.+-+-+.
T Consensus 67 il~fl~~f~~Y~~~~dpeg-~~~V-~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DR 144 (885)
T COG5218 67 ILSFLKRFFEYDMPDDPEG-EELV-AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDR 144 (885)
T ss_pred HHHHHHHHHHhcCCCChhh-hHHH-HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcc
Confidence 3333333333343455554 2233 2667777788888999999999999999886544444555567777788888888
Q ss_pred CHHHHHHHHHHHHhcccC
Q 010291 183 NGSLQHNAAFALYGLADN 200 (513)
Q Consensus 183 ~~~~~~~a~~~L~~l~~~ 200 (513)
.+.++..|+.+|..+-..
T Consensus 145 E~~VR~eAv~~L~~~Qe~ 162 (885)
T COG5218 145 EKAVRREAVKVLCYYQEM 162 (885)
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 899999999999987653
No 265
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=87.72 E-value=6.8 Score=33.07 Aligned_cols=110 Identities=15% Similarity=0.192 Sum_probs=72.6
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCC--ChHHHHHhhcCCC-hHHHHHHHHHHHHhh---cCCc
Q 010291 46 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG--ALQPVIGLLSSCC-SESQREAALLLGQFA---ATDS 119 (513)
Q Consensus 46 ~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~ll~~~~-~~~~~~a~~~L~~l~---~~~~ 119 (513)
.+..+..+|.++++.-|..++..+...+..++ .+.+.+.+ -+..++..++.++ ..+.+.++.+|..+. .+.+
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 35567788899899999999999988886542 23443433 5778888888755 566778888887776 4445
Q ss_pred hhhHHHHh---cCChHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q 010291 120 DCKVHIVQ---RGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 159 (513)
Q Consensus 120 ~~~~~~~~---~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~ 159 (513)
+..+.+.. .++++.+++++++ ......++.+|..+-..
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 54444433 2344555555554 45666777777777643
No 266
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=87.69 E-value=15 Score=37.60 Aligned_cols=162 Identities=21% Similarity=0.136 Sum_probs=93.8
Q ss_pred CCHHHHHHHHHHHHHhhccCchhHHHHH---hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhC--CCh
Q 010291 15 TDTKVQRAAAGALRTLAFKNDENKNQIV---ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--GAL 89 (513)
Q Consensus 15 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~---~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i 89 (513)
..++++.-|+.+|+-+..+...+-..+- ....+..++..+. .++..+..++++|.|+..+ +..++.+... ..+
T Consensus 556 wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~~~i~ 633 (745)
T KOG0301|consen 556 WPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRLESIL 633 (745)
T ss_pred CCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHHHHHh
Confidence 4556677888888888775443333332 1224445555554 5577788899999999877 6555555433 122
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC---C--CCHHHHHHHHHHHHHHhhccccch
Q 010291 90 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ---S--PDVQLREMSAFALGRLAQDMHNQA 164 (513)
Q Consensus 90 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~---~--~~~~~~~~a~~~L~~l~~~~~~~~ 164 (513)
..+.+.-..++..++...+....|++..- .+.-.+.+..+.+...+. + +|-+.....+.+|++|+..+....
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l---~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~ 710 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLL---IQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVI 710 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHH---HhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHH
Confidence 22233223344566655554444544110 001111344444444443 2 244556677888999998888877
Q ss_pred hhHhcCChHHHHHHhcC
Q 010291 165 GIAHNGGLVPLLKLLDS 181 (513)
Q Consensus 165 ~~~~~~~i~~L~~ll~~ 181 (513)
.+...-.++.+.+-+++
T Consensus 711 ~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 711 QLAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHhcCHHHHHHHHHH
Confidence 78777777777776654
No 267
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=87.62 E-value=9.9 Score=40.73 Aligned_cols=138 Identities=17% Similarity=0.180 Sum_probs=98.5
Q ss_pred ccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHH
Q 010291 13 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 92 (513)
Q Consensus 13 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 92 (513)
.+.|..+...|+.+|..++.......... ..++.+.++..++...+.++..+..++-.++..... ....+.+
T Consensus 305 kDaN~~v~~~aa~~l~~ia~~lr~~~~~~-~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I 376 (815)
T KOG1820|consen 305 KDANINVVMLAAQILELIAKKLRPLFRKY-AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAI 376 (815)
T ss_pred cCcchhHHHHHHHHHHHHHHhcchhhHHH-HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHH
Confidence 34577888899999999998644442222 235688899999988888888888887777643221 2356778
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhcCCc-hhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010291 93 IGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158 (513)
Q Consensus 93 ~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 158 (513)
...+.+.++..+..+...+........ .....-.-.+.++.++...++.+.++|..+..++..+-.
T Consensus 377 ~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 377 LEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred HHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 888999999999887766666554333 212222234578888899999999999999999888754
No 268
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.44 E-value=1.1 Score=41.61 Aligned_cols=64 Identities=11% Similarity=0.060 Sum_probs=56.1
Q ss_pred HHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhHHHHHHhC
Q 010291 23 AAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 86 (513)
Q Consensus 23 a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 86 (513)
..+.|++++..+++++..+.+.||++.++.-.. +.+|-+++..+.|+.+|..++.++++.+...
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 567899999999999999999999999887655 6789999999999999999999988776543
No 269
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=87.34 E-value=6.3 Score=36.41 Aligned_cols=155 Identities=18% Similarity=0.142 Sum_probs=88.2
Q ss_pred hccCCHHHHHHHHHHHHHhhccCchhHHHHHhcC--CHHHHHHhhc----CCCHHHHHHHHHHHHHhhcCChhHHHHHHh
Q 010291 12 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN--ALPTLILMLR----SEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 85 (513)
Q Consensus 12 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~Lv~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 85 (513)
+.+..++.+.-++..++-++. ++.....+...+ +...+..++. ..++..+..+++++.|+..+ +..+..+..
T Consensus 72 ~~~Wp~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~-~~~~~~~~~ 149 (268)
T PF08324_consen 72 LLSWPPESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH-PPGRQLLLS 149 (268)
T ss_dssp HCCS-CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS-CCCHHHHHC
T ss_pred HHhCCCccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC-CccHHHHHh
Confidence 333333445566666665555 444444444332 2444555544 24678899999999999876 445555554
Q ss_pred CC--ChHHHHHhhcCC----ChHHHHHHHHHHHHhhcCCchhh-HHHHhcCChHHHHHHh-CC-CCHHHHHHHHHHHHHH
Q 010291 86 AG--ALQPVIGLLSSC----CSESQREAALLLGQFAATDSDCK-VHIVQRGAVRPLIEML-QS-PDVQLREMSAFALGRL 156 (513)
Q Consensus 86 ~g--~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~~l-~~-~~~~~~~~a~~~L~~l 156 (513)
.. .+...+..+... +..++..++..+.|++......+ ..-.....+..+.+.+ .. .+++....++-+|+++
T Consensus 150 ~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL 229 (268)
T PF08324_consen 150 HFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTL 229 (268)
T ss_dssp THHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence 32 222222223333 67888999999999973211111 0001112355566633 33 5999999999999999
Q ss_pred hhccccchhhHh
Q 010291 157 AQDMHNQAGIAH 168 (513)
Q Consensus 157 ~~~~~~~~~~~~ 168 (513)
...+........
T Consensus 230 ~~~~~~~~~~~~ 241 (268)
T PF08324_consen 230 LSSSDSAKQLAK 241 (268)
T ss_dssp HCCSHHHHHHCC
T ss_pred hccChhHHHHHH
Confidence 966655444444
No 270
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=87.02 E-value=47 Score=35.59 Aligned_cols=153 Identities=14% Similarity=0.076 Sum_probs=102.0
Q ss_pred hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKE 82 (513)
Q Consensus 5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~ 82 (513)
+.-|+++....+.++...-..+|...+.-+++... ..+..+.|.++.+.. +++|.+...+-.++-.++.. ..+. .
T Consensus 532 ld~L~qlas~~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~-g 608 (1005)
T KOG2274|consen 532 LDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANY-G 608 (1005)
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhh-c
Confidence 34455555555666666777788877775555433 345566777766554 67888888887787777752 2221 1
Q ss_pred HHhCCChHHHHHhhcCCC----hHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHh
Q 010291 83 VLAAGALQPVIGLLSSCC----SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLA 157 (513)
Q Consensus 83 ~~~~g~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~ 157 (513)
-.+...+|.++..+..++ +.....++..|..+.+..|.......-.-+.|++.++.-. +|.++..++..||+.+.
T Consensus 609 ~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~I 688 (1005)
T KOG2274|consen 609 PMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALI 688 (1005)
T ss_pred chHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence 223347899999998765 6777888888888877766544444444567888777654 57788889999999887
Q ss_pred hcc
Q 010291 158 QDM 160 (513)
Q Consensus 158 ~~~ 160 (513)
...
T Consensus 689 s~~ 691 (1005)
T KOG2274|consen 689 SVT 691 (1005)
T ss_pred hcC
Confidence 653
No 271
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.70 E-value=45 Score=35.09 Aligned_cols=241 Identities=15% Similarity=0.116 Sum_probs=120.3
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhc
Q 010291 49 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR 128 (513)
Q Consensus 49 ~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 128 (513)
.+..+.++.++.+|+..--++..++.-+++. . -+...+..-.....+..+..|.++|+.+..+..-.
T Consensus 68 ~~tKlfQskd~~LRr~vYl~Ikels~isedv--i----ivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~------- 134 (865)
T KOG1078|consen 68 AITKLFQSKDVSLRRMVYLAIKELSKISEDV--I----IVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQ------- 134 (865)
T ss_pred HHHHHHhhcCHHHHHHHHHHHhhccccchhh--h----hhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhH-------
Confidence 3445555777777777777777776544432 0 12334444433445667788888888886332211
Q ss_pred CChHHHHHHhCCCCHHHHHHH-HHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchH-HH
Q 010291 129 GAVRPLIEMLQSPDVQLREMS-AFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV-AD 206 (513)
Q Consensus 129 ~~i~~L~~~l~~~~~~~~~~a-~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~ 206 (513)
++-..+-+.+-+.++.+...| +..++-+......-+... .....-..+.+.-+|.+|++.|..+-.+.... ..
T Consensus 135 ~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~-----neiqea~~s~~~m~QyHalglLyqirk~drla~sk 209 (865)
T KOG1078|consen 135 AIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWA-----NEVQEAVNSDNIMVQYHALGLLYQIRKNDRLAVSK 209 (865)
T ss_pred HHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHH-----HhhhhccCcHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 011112222223333333222 222333322222111111 11122223334456778888888775533221 11
Q ss_pred HHhhcCcccccchhhhhhhhHHHHHH--HHHHHHHH--hhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeee
Q 010291 207 FIRVGGVQKLQDGEFIVQATKDCVAK--TLKRLEEK--IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 282 (513)
Q Consensus 207 ~~~~g~i~~L~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~ 282 (513)
++. .+.+.. .-...+.|... +.+.+... ......+.+=.++++...-+...|+.++.++...... .+.
T Consensus 210 lv~-----~~~~~~-~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r--~l~ 281 (865)
T KOG1078|consen 210 LVQ-----KFTRGS-LKSPLAVCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR--ELA 281 (865)
T ss_pred HHH-----HHcccc-ccchhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHh--hcc
Confidence 111 111100 00001112111 11112111 1223455566677777888999999999988532211 111
Q ss_pred cCCchHHHHhhhcCCCcchhhhHHHHHHHhhhccc
Q 010291 283 DGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 317 (513)
Q Consensus 283 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 317 (513)
. .+..|.-++.++.+.+|..|...|..++-..+
T Consensus 282 p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P 314 (865)
T KOG1078|consen 282 P--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP 314 (865)
T ss_pred h--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC
Confidence 1 78888888999999999999999999986554
No 272
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=86.50 E-value=7.3 Score=29.42 Aligned_cols=93 Identities=16% Similarity=0.135 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhh
Q 010291 18 KVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 96 (513)
Q Consensus 18 ~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll 96 (513)
++|.+|+.-|..--.+.--....+. ..+.+..|++..+.++.-....++..|..++.. +.....+.+.|++..|.++-
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr 80 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLR 80 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHH
Confidence 5677777655433332222233333 345667777777777777888999999998876 66668888889999877777
Q ss_pred cCCChHHHHHHHHHH
Q 010291 97 SSCCSESQREAALLL 111 (513)
Q Consensus 97 ~~~~~~~~~~a~~~L 111 (513)
..-++..+...-.++
T Consensus 81 ~~~~~~~~~~id~il 95 (98)
T PF14726_consen 81 PNVEPNLQAEIDEIL 95 (98)
T ss_pred hcCCHHHHHHHHHHH
Confidence 666666665554444
No 273
>PRK14707 hypothetical protein; Provisional
Probab=86.40 E-value=65 Score=38.32 Aligned_cols=147 Identities=17% Similarity=0.163 Sum_probs=83.7
Q ss_pred ccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHH
Q 010291 13 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 91 (513)
Q Consensus 13 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 91 (513)
+-++..+...|+..|..-...+++.+..+-.. ++...++-|. =++..+...|+..|..=..+..+.++.+-..|+-..
T Consensus 342 KWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q-~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~ 420 (2710)
T PRK14707 342 KWPDNPVCAAAVSALAERLVADPELRKDLEPQ-GVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNA 420 (2710)
T ss_pred cCCCchhHHHHHHHHHHHhccCHhhhcccchh-HHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHH
Confidence 44666777777777776555466666665433 4666666665 345555555555555555565777776655554444
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC-CCHHHHHHHHH-HHHHHhhccc
Q 010291 92 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAF-ALGRLAQDMH 161 (513)
Q Consensus 92 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~-~L~~l~~~~~ 161 (513)
|--+-+-++..+...++..|..-..++.+.+..+--.++.. .++.++. +|..+-..++. ....|+.+.+
T Consensus 421 lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~-~LnalSKWPd~p~c~~aa~~La~~l~~~~~ 491 (2710)
T PRK14707 421 LNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQ-ALDALSKWPDTPICGQTASALAARLAHERR 491 (2710)
T ss_pred HHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHH-HHHHhhcCCCChhHHHHHHHHHHHhcccHH
Confidence 43344447777888888877776667677666554444333 3444443 55444433333 3344443333
No 274
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=86.27 E-value=7.6 Score=32.77 Aligned_cols=108 Identities=22% Similarity=0.201 Sum_probs=70.0
Q ss_pred ChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHh--cCChHHHHHHhCCC-CHHHHHHHHHHHHHHhhccccch
Q 010291 88 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHNQA 164 (513)
Q Consensus 88 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~ 164 (513)
.+..+..++.+.+++-+-.++..+.-.+..++. +.+.+ ...+..+++.++++ ++.+.+.++.+|..+...-....
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 455678888888888887777777777755432 33322 34688899999886 56778899999998885444433
Q ss_pred hhHhc-------CChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291 165 GIAHN-------GGLVPLLKLLDSKNGSLQHNAAFALYGLAD 199 (513)
Q Consensus 165 ~~~~~-------~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 199 (513)
.+.++ +.++.++++++. ......++.+|..+-.
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 33322 234445555553 4555667777776654
No 275
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=86.14 E-value=7 Score=41.42 Aligned_cols=153 Identities=14% Similarity=0.217 Sum_probs=98.6
Q ss_pred HHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCCh--HHHHHhhcCCCh-
Q 010291 26 ALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL--QPVIGLLSSCCS- 101 (513)
Q Consensus 26 ~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i--~~L~~ll~~~~~- 101 (513)
+|.+....+++....+.+.|++..+..+++ -.+.+++..+++.+++++...+. +.......-+ ..+-.++...+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~-~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLEL-RELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHhhcchh
Confidence 788888889999999999999999999999 45778999999999999865322 2221111111 233334444444
Q ss_pred HHHHHHHHHHHHhhcCCchhh-----------------------HHHHhcCChHH-HHHHhCC-CCHHHHHHHHHHHHHH
Q 010291 102 ESQREAALLLGQFAATDSDCK-----------------------VHIVQRGAVRP-LIEMLQS-PDVQLREMSAFALGRL 156 (513)
Q Consensus 102 ~~~~~a~~~L~~l~~~~~~~~-----------------------~~~~~~~~i~~-L~~~l~~-~~~~~~~~a~~~L~~l 156 (513)
+..+.++..|..+....++.. ..........+ +..++.. ..+..+..|.|++.++
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~ 652 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV 652 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence 777888888888876533210 00111122222 4444443 3567888999999999
Q ss_pred hhccc-cchhhHhcCChHHHHHHh
Q 010291 157 AQDMH-NQAGIAHNGGLVPLLKLL 179 (513)
Q Consensus 157 ~~~~~-~~~~~~~~~~i~~L~~ll 179 (513)
..... ..+.+.+.|++..+.+.-
T Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~ 676 (699)
T KOG3665|consen 653 LEQNKEYCKLVRESNGFELIENIR 676 (699)
T ss_pred HHcChhhhhhhHhccchhhhhhcc
Confidence 96544 455566677776665543
No 276
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=86.14 E-value=32 Score=32.87 Aligned_cols=159 Identities=14% Similarity=0.087 Sum_probs=105.1
Q ss_pred hHHHHHhhcCCChHHHHHHHHHHHHhhc-CCchhhHHHHh-cC-ChHHHHHHhCCC-----C--------HHHHHHHHHH
Q 010291 89 LQPVIGLLSSCCSESQREAALLLGQFAA-TDSDCKVHIVQ-RG-AVRPLIEMLQSP-----D--------VQLREMSAFA 152 (513)
Q Consensus 89 i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~-~~-~i~~L~~~l~~~-----~--------~~~~~~a~~~ 152 (513)
+..+...|++....+...+...|..++. ........+.. -+ -.+.+-.++... + +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7778888888888888899999999987 44444444443 22 234555555311 1 2788777777
Q ss_pred HHHHhhcc--ccchhhHh-cCChHHHHHHhcCCCHHHHHHHHHHHHh-cccCcchHHHHHhhcCcccccchhhhhhhhHH
Q 010291 153 LGRLAQDM--HNQAGIAH-NGGLVPLLKLLDSKNGSLQHNAAFALYG-LADNEDNVADFIRVGGVQKLQDGEFIVQATKD 228 (513)
Q Consensus 153 L~~l~~~~--~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~ 228 (513)
+..+.... ..+..+.. .+.+..+.+-+..++.++....+.++.. +..++ ......+.
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~-~v~r~~K~------------------ 198 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS-SVSRSTKC------------------ 198 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC-CCChhhhh------------------
Confidence 66666433 33555555 4556668888988889999999998885 33333 32222221
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhc----chhhhHHHHHhhccCCCC
Q 010291 229 CVAKTLKRLEEKIHGRVLNHLLYLMRVAEK----GVQRRVALALAHLCSPDD 276 (513)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~----~v~~~a~~aL~~l~~~~~ 276 (513)
.+.+..++..|+.+-...++ .+...+-..|..+|.++.
T Consensus 199 ----------~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 199 ----------KLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred ----------hhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCC
Confidence 23456678888887777666 788888888888886543
No 277
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=85.92 E-value=16 Score=32.93 Aligned_cols=137 Identities=18% Similarity=0.113 Sum_probs=89.7
Q ss_pred HHHHH-hhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHH
Q 010291 48 PTLIL-MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 126 (513)
Q Consensus 48 ~~Lv~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 126 (513)
+.++. +-+..++..+...+.+|..++.....+... ++..+..+.+.+..+....+...+..+...++...
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence 44444 334678999999999999999875122122 45666777777777777778888888875544322
Q ss_pred hcCChHHHHHH--h------CC--CCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHh-cCCCHHHHHHHHHHHH
Q 010291 127 QRGAVRPLIEM--L------QS--PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALY 195 (513)
Q Consensus 127 ~~~~i~~L~~~--l------~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~ 195 (513)
+.+..++.. + .+ ...+.....+.++..+|...+++. ...++.+...+ .+.++.++..++.+|.
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g----~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG----VDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH----HHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 233333333 1 11 133445555678888887666521 23466677888 7788889999999999
Q ss_pred hccc
Q 010291 196 GLAD 199 (513)
Q Consensus 196 ~l~~ 199 (513)
.+|.
T Consensus 148 ~Lc~ 151 (234)
T PF12530_consen 148 PLCE 151 (234)
T ss_pred HHHH
Confidence 9994
No 278
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=85.73 E-value=5.4 Score=41.12 Aligned_cols=132 Identities=17% Similarity=0.170 Sum_probs=89.1
Q ss_pred CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291 3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKK 81 (513)
Q Consensus 3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~ 81 (513)
.++|.|.+.+++.+..+|..++..+...+.. -+ ...+..-++|.+-++.. +.+..++..++.|+..+... .+
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~-iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~----lD 461 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAES-ID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR----LD 461 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHh-cc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH----HH
Confidence 3566777777888889999999988888762 22 34445556777766533 67888999999999988821 22
Q ss_pred HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCC
Q 010291 82 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD 142 (513)
Q Consensus 82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~ 142 (513)
...-...+..+....+..++.+......+..++....... ..++...++|.++.+...+.
T Consensus 462 ~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 462 KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence 2222234555666666788888888888888877554442 34455577887777776654
No 279
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=84.78 E-value=55 Score=34.34 Aligned_cols=145 Identities=15% Similarity=0.157 Sum_probs=89.6
Q ss_pred CCChhHHHHhhc-c-------CCHHHHHHHHHHHHHhhc--cCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 010291 2 EGGIPPLVELLE-F-------TDTKVQRAAAGALRTLAF--KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGN 71 (513)
Q Consensus 2 ~g~i~~Lv~lL~-~-------~~~~~~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~ 71 (513)
.|.++-++..|. + +++.-.+.|++.++++.. ..+.-...+.+.=+++.+++.++++---++.+|+..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 477788888883 2 234556667777777654 222222333343456677777788888899999999999
Q ss_pred hhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHh--cCChHHHHHHhCCCCHHHHHHH
Q 010291 72 LVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGAVRPLIEMLQSPDVQLREMS 149 (513)
Q Consensus 72 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~~~~~~~~~~a 149 (513)
+..+ .++...-..+.+...+++.+++-.++-.|+.++..+..+. +....+.+ .+.++.|+.+-+.-+.++...+
T Consensus 487 ~eeD---fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~-q~h~k~sahVp~tmekLLsLSn~feiD~LS~v 562 (970)
T COG5656 487 IEED---FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE-QSHEKFSAHVPETMEKLLSLSNTFEIDPLSMV 562 (970)
T ss_pred HHHh---cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch-hhhHHHHhhhhHHHHHHHHhcccccchHHHHH
Confidence 9543 3333444456677778888888889999999999988664 22222221 3344445544444344444333
Q ss_pred H
Q 010291 150 A 150 (513)
Q Consensus 150 ~ 150 (513)
.
T Consensus 563 M 563 (970)
T COG5656 563 M 563 (970)
T ss_pred H
Confidence 3
No 280
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=84.45 E-value=3.8 Score=33.59 Aligned_cols=71 Identities=13% Similarity=0.129 Sum_probs=58.5
Q ss_pred ChhHHHHhhccCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhc
Q 010291 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVH 74 (513)
Q Consensus 4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~ 74 (513)
++..|..-|+++++.++..|+..|-.++.+. ......+...+.+..|+.++.. .++.|+..++..+...+.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 4566777788999999999999999998753 3566778888899999999986 788999999988888764
No 281
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=84.44 E-value=36 Score=33.70 Aligned_cols=183 Identities=14% Similarity=0.104 Sum_probs=96.1
Q ss_pred hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCh-hHHHH
Q 010291 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSP-NIKKE 82 (513)
Q Consensus 5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~-~~~~~ 82 (513)
+..|+.++.|+|+..|......|.++-......|..++.. +...+.+.+. ..........+..++.+..+.. ..++.
T Consensus 135 i~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~-i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~e 213 (409)
T PF01603_consen 135 IKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKS-INNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEE 213 (409)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHH-HHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHH
Confidence 5678899999999999999999999887666666666553 4556666666 4455667778888888876532 11111
Q ss_pred HHhCCChHHHHHhhcCCC-hHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccc
Q 010291 83 VLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH 161 (513)
Q Consensus 83 ~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 161 (513)
... =....++.+..... ......-..++......++.....+ +..+++.=-..++.-...-+.-+..+...-+
T Consensus 214 h~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~WP~t~s~Kev~FL~el~~il~~~~ 287 (409)
T PF01603_consen 214 HKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHWPKTNSQKEVLFLNELEEILEVLP 287 (409)
T ss_dssp HHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--
T ss_pred HHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCchhHHHHHHHHHHHHHhcC
Confidence 100 01233344444433 2223444455555555555433322 3344444444444444444444444443221
Q ss_pred c-chhhHhcCChHHHHHHhcCCCHHHHHHHHHHH
Q 010291 162 N-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 194 (513)
Q Consensus 162 ~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L 194 (513)
. .-.-+.......+...+.+.+..+.+.|+..+
T Consensus 288 ~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w 321 (409)
T PF01603_consen 288 PEEFQKIMVPLFKRLAKCISSPHFQVAERALYFW 321 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1 11111122344566777888888877776543
No 282
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=84.23 E-value=2.3 Score=37.58 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHhCCCh-------HHHHHhhcC-CChHHHHHHHHHHHHhhcCCchhh-HHHHhcCC
Q 010291 60 AIHYEAVGVIGNLVHSSPNIKKEVLAAGAL-------QPVIGLLSS-CCSESQREAALLLGQFAATDSDCK-VHIVQRGA 130 (513)
Q Consensus 60 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i-------~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~ 130 (513)
.-|..|+.+|.+++.. +.+.+.+...+-. ..|++++.. .+.-.|+.|+..|.+++..++... ....+.+.
T Consensus 139 SPqrlaLEaLcKLsV~-e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVI-ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhee-ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 4588999999999976 4455555555443 444555544 567889999999999998877654 45567889
Q ss_pred hHHHHHHhCCCC
Q 010291 131 VRPLIEMLQSPD 142 (513)
Q Consensus 131 i~~L~~~l~~~~ 142 (513)
+..|+.++.+.+
T Consensus 218 i~~Li~FiE~a~ 229 (257)
T PF12031_consen 218 ISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHHH
Confidence 999999997553
No 283
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=83.80 E-value=4.3 Score=33.25 Aligned_cols=71 Identities=11% Similarity=0.121 Sum_probs=58.1
Q ss_pred ChhHHHHhhccCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhc
Q 010291 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVH 74 (513)
Q Consensus 4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~ 74 (513)
++..|..-|+++++.++..|+..|-.+..+ .......+...+.+..|+.++. ..++.|+..++..+..-+.
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 456677778889999999999999998875 3557777888889999999887 5678899999888877763
No 284
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=83.14 E-value=3.7 Score=43.28 Aligned_cols=130 Identities=18% Similarity=0.160 Sum_probs=79.0
Q ss_pred HHHHhhcc----CCHHHHHHHHHHHHHhhccCchh---------HHHHHhcCCHHHHHHhhc----CCCHHHHHHHHHHH
Q 010291 7 PLVELLEF----TDTKVQRAAAGALRTLAFKNDEN---------KNQIVECNALPTLILMLR----SEDSAIHYEAVGVI 69 (513)
Q Consensus 7 ~Lv~lL~~----~~~~~~~~a~~~L~~l~~~~~~~---------~~~i~~~g~i~~Lv~lL~----~~~~~v~~~a~~~L 69 (513)
.+.+++++ +++.++..|+-+++.+....-.. .........++.+...|. ..+.+-+..++.+|
T Consensus 435 ~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL 514 (618)
T PF01347_consen 435 ELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKAL 514 (618)
T ss_dssp HHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHh
Confidence 34445543 35667777777777776421111 112222345667776666 45678888999999
Q ss_pred HHhhcCChhHHHHHHhCCChHHHHHhhcCC---ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC--CCHH
Q 010291 70 GNLVHSSPNIKKEVLAAGALQPVIGLLSSC---CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQ 144 (513)
Q Consensus 70 ~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~~~ 144 (513)
+|+... ..++.+..++.+. ...+|..|+++|..+....+.. +.+.+++++.+ .+++
T Consensus 515 gN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~E 575 (618)
T PF01347_consen 515 GNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPE 575 (618)
T ss_dssp HHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HH
T ss_pred hccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChh
Confidence 999632 2577778877765 5789999999999887555432 34466777765 4778
Q ss_pred HHHHHHHHHHH
Q 010291 145 LREMSAFALGR 155 (513)
Q Consensus 145 ~~~~a~~~L~~ 155 (513)
+|..|..+|..
T Consensus 576 vRiaA~~~lm~ 586 (618)
T PF01347_consen 576 VRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88887766655
No 285
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=82.77 E-value=28 Score=32.82 Aligned_cols=143 Identities=22% Similarity=0.300 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHHHHhhccCchhHHHHHhc-----------CCHHHHHHhhc------CCCHHHHHHHHHHHHHhhcCChh
Q 010291 16 DTKVQRAAAGALRTLAFKNDENKNQIVEC-----------NALPTLILMLR------SEDSAIHYEAVGVIGNLVHSSPN 78 (513)
Q Consensus 16 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-----------g~i~~Lv~lL~------~~~~~v~~~a~~~L~~l~~~~~~ 78 (513)
.-++|..|+.++.....+|++.+..+++. .....++..|- +.|+.-...|+.+|.++..++++
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 46899999999999999999999887642 11223555554 44666777899999999999999
Q ss_pred HHHHHHhC--C----------ChHHHHHhhcC-----CChHHHHHHHHHHHHhhcCCchhhHHHHhcC-ChHHHHHHhCC
Q 010291 79 IKKEVLAA--G----------ALQPVIGLLSS-----CCSESQREAALLLGQFAATDSDCKVHIVQRG-AVRPLIEMLQS 140 (513)
Q Consensus 79 ~~~~~~~~--g----------~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~~~l~~ 140 (513)
.|+....- | .++.+..+|-. .++.++..-+..|..-..+++.....+...+ .++.|+.....
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~ 210 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQ 210 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS-
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhc
Confidence 88876643 1 13334444433 3556666666666666677788777777654 78889887643
Q ss_pred ---CCHHHHHHHHHHHHHHhh
Q 010291 141 ---PDVQLREMSAFALGRLAQ 158 (513)
Q Consensus 141 ---~~~~~~~~a~~~L~~l~~ 158 (513)
.++-++-.++..|+-+-.
T Consensus 211 ~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 211 SSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp -TCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHH
Confidence 355666666655555443
No 286
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=82.65 E-value=6.4 Score=31.82 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=56.8
Q ss_pred ChhHHHHhhccCCHHHHHHHHHHHHHhhccCch-hHHHHHhcCCHHHHHHhhcC---CCHHHHHHHHHHHHHhhcC
Q 010291 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-NKNQIVECNALPTLILMLRS---EDSAIHYEAVGVIGNLVHS 75 (513)
Q Consensus 4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~~---~~~~v~~~a~~~L~~l~~~ 75 (513)
++..|...|+++++.++..|+..|-.+..+... ....+.....+..++.++.. .++.|+..++..+...+..
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 456677778899999999999999999886443 66667776778888888874 4788999999988877643
No 287
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.77 E-value=30 Score=37.68 Aligned_cols=262 Identities=15% Similarity=0.117 Sum_probs=138.7
Q ss_pred HHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCC----
Q 010291 24 AGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC---- 99 (513)
Q Consensus 24 ~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~---- 99 (513)
..+|..+.+++.+++..+.+..++..+++.+- +.+-|...++++..+....+... ...-+-.+++.|.+.
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpfli--ndehRSslLrivscLitvdpkqv----hhqelmalVdtLksgmvt~ 736 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHRSSLLRIVSCLITVDPKQV----HHQELMALVDTLKSGMVTR 736 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHHHHHHHHHHHHhccCcccc----cHHHHHHHHHHHHhcceec
Confidence 56788888889999999999999998888884 45566666777776655434321 111234455555541
Q ss_pred ----C----hHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC----------CCHHHHHHHHHH---H--HHH
Q 010291 100 ----C----SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS----------PDVQLREMSAFA---L--GRL 156 (513)
Q Consensus 100 ----~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~----------~~~~~~~~a~~~---L--~~l 156 (513)
. .+.......+++.+...+...+..+.++++...|...|-. +|.-+...-... + ..+
T Consensus 737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav 816 (2799)
T KOG1788|consen 737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV 816 (2799)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 1 2344556677888876666667778888888887766631 121111111111 1 123
Q ss_pred hhccccchhhHhcCChHHHHHHhcCCC---HHHHHHHHHHHHhcc----cCcchHHHHHhhcCcccccchhhhhhhhHHH
Q 010291 157 AQDMHNQAGIAHNGGLVPLLKLLDSKN---GSLQHNAAFALYGLA----DNEDNVADFIRVGGVQKLQDGEFIVQATKDC 229 (513)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~L~~ll~~~~---~~~~~~a~~~L~~l~----~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~ 229 (513)
|.+..++.++-..-.-+.+..+|.... -+.-+..+..|..++ ..+....+.....-+..+-+..+..-..
T Consensus 817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntP--- 893 (2799)
T KOG1788|consen 817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTP--- 893 (2799)
T ss_pred hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccC---
Confidence 455556655433333333444444322 000011111111111 1111111111111011110000000000
Q ss_pred HHHH-HHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCC-CcceeeecCCchHHHHhhhc
Q 010291 230 VAKT-LKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLLG 295 (513)
Q Consensus 230 ~~~~-~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~l~~~~~i~~L~~ll~ 295 (513)
.+. ....+.+++.+++..++..+-...+..|..-+..+..+++.. .+...+-..|.++.|++++.
T Consensus 894 -sGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiy 960 (2799)
T KOG1788|consen 894 -SGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIY 960 (2799)
T ss_pred -CCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhh
Confidence 000 011244577888888888888888888999888888888754 46666666788888877764
No 288
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=81.47 E-value=17 Score=33.85 Aligned_cols=70 Identities=14% Similarity=0.172 Sum_probs=47.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH-HHHHhCCChHHHHHhh----c--------CCChHHHHHHHHHHH
Q 010291 46 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK-KEVLAAGALQPVIGLL----S--------SCCSESQREAALLLG 112 (513)
Q Consensus 46 ~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~ll----~--------~~~~~~~~~a~~~L~ 112 (513)
++|.++.++.+.++.++..++.+|..+....+... ..+.+.|..+.+-+.+ . .+...+...+--+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 58999999999999999999999999997655433 2255566555443333 2 233455566666666
Q ss_pred Hhh
Q 010291 113 QFA 115 (513)
Q Consensus 113 ~l~ 115 (513)
.++
T Consensus 200 ~L~ 202 (282)
T PF10521_consen 200 SLL 202 (282)
T ss_pred HHH
Confidence 664
No 289
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=81.20 E-value=6.1 Score=32.17 Aligned_cols=71 Identities=10% Similarity=0.113 Sum_probs=56.4
Q ss_pred ChhHHHHhhccCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCHHHHHHhhcC------CCHHHHHHHHHHHHHhhc
Q 010291 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLVH 74 (513)
Q Consensus 4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~------~~~~v~~~a~~~L~~l~~ 74 (513)
++..+..-|+++++.++..|+..|-.+..+ .......+...+.+..++.++.. .+..|+...+..+..-+.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 456677788899999999999999988874 35567778888889899999852 467899988888776653
No 290
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=81.20 E-value=54 Score=33.86 Aligned_cols=171 Identities=16% Similarity=0.065 Sum_probs=87.0
Q ss_pred CChHHHHHHHHHHHHhhcCCchhhHHHH---hcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhc--CChH
Q 010291 99 CCSESQREAALLLGQFAATDSDCKVHIV---QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHN--GGLV 173 (513)
Q Consensus 99 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~---~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~i~ 173 (513)
-..+.+.-|.-+|+-+..+....-.... ...++..++..++ .++..+..++++|.|+..++.++..+... ..+.
T Consensus 556 wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~ 634 (745)
T KOG0301|consen 556 WPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESILD 634 (745)
T ss_pred CCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh
Confidence 3445556666666666544333222222 1234555555555 56777888999999999887777665542 1222
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhccc--CcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHH
Q 010291 174 PLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLY 251 (513)
Q Consensus 174 ~L~~ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~ 251 (513)
.+.+.-..++..++...+....|++- ...+ .+.+..+.+..
T Consensus 635 ~~~~~~s~~~knl~ia~atlaln~sv~l~~~~-------------------------------------~~~~~~~~l~~ 677 (745)
T KOG0301|consen 635 PVIEASSLSNKNLQIALATLALNYSVLLIQDN-------------------------------------EQLEGKEVLLS 677 (745)
T ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHHhcc-------------------------------------cccchHHHHHH
Confidence 22222222333444333333333321 1100 01112222222
Q ss_pred HHHH-----hhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcC-CCcchhhhHHH
Q 010291 252 LMRV-----AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAV 307 (513)
Q Consensus 252 lL~~-----~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~ 307 (513)
.+.. .+.+....++.||++|+..+.....+.+.-.+..+..-+++ .+.+.....+.
T Consensus 678 ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a~ 739 (745)
T KOG0301|consen 678 AISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKNRSVDSIAKKLKEAVSNPSGKNIAR 739 (745)
T ss_pred HHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHhcCHHHHHHHHHHhccCchhhHHHH
Confidence 2222 23345566778999998877655556565567777776664 33343333333
No 291
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=80.52 E-value=20 Score=33.40 Aligned_cols=70 Identities=17% Similarity=0.188 Sum_probs=49.5
Q ss_pred ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhH-HHHHhcCCHHHHH----Hhhc--------CCCHHHHHHHHHHHH
Q 010291 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLI----LMLR--------SEDSAIHYEAVGVIG 70 (513)
Q Consensus 4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~Lv----~lL~--------~~~~~v~~~a~~~L~ 70 (513)
.+|.++.++.+.++.++..++.+|..+..+.+... ..+.+.|..+.+- .+|. .+...+...|..+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 47889999999999999999999999997543333 2355666554443 3443 244567777777887
Q ss_pred Hhh
Q 010291 71 NLV 73 (513)
Q Consensus 71 ~l~ 73 (513)
.++
T Consensus 200 ~L~ 202 (282)
T PF10521_consen 200 SLL 202 (282)
T ss_pred HHH
Confidence 774
No 292
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=80.40 E-value=64 Score=31.98 Aligned_cols=131 Identities=17% Similarity=0.233 Sum_probs=93.0
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhhccCc---hhHHHHHhcCCHHHHHHhhcCC-------CHHHHHHHHHHHHHhhcCC
Q 010291 7 PLVELLEFTDTKVQRAAAGALRTLAFKND---ENKNQIVECNALPTLILMLRSE-------DSAIHYEAVGVIGNLVHSS 76 (513)
Q Consensus 7 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~---~~~~~i~~~g~i~~Lv~lL~~~-------~~~v~~~a~~~L~~l~~~~ 76 (513)
.+..+++..+...|..|+....+++++.+ .++..+.+.-+.+.+-++|.+. +...+..++..|..+|+.
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~- 93 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV- 93 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-
Confidence 34556677788889999999999998643 4566677877777888888742 334567788888888876
Q ss_pred hhHH--HHHHhCCChHHHHHhhcCC-ChH------HHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC
Q 010291 77 PNIK--KEVLAAGALQPVIGLLSSC-CSE------SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 141 (513)
Q Consensus 77 ~~~~--~~~~~~g~i~~L~~ll~~~-~~~------~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~ 141 (513)
++.. +.++ +.||.|+++++.. +++ +...+-.+|..++.. +.....++..|.++.+.++-.-+
T Consensus 94 pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~ 164 (698)
T KOG2611|consen 94 PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELP 164 (698)
T ss_pred hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCC
Confidence 4331 2222 4688888888752 232 567777788888755 66677888899999998766544
No 293
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=79.73 E-value=39 Score=35.27 Aligned_cols=132 Identities=20% Similarity=0.210 Sum_probs=70.8
Q ss_pred ChHHHHHHhCCC----CHHHHHHHHHHHHHHhhcc----ccchhhHhcCChHHHHHHhc----CCCHHHHHHHHHHHHhc
Q 010291 130 AVRPLIEMLQSP----DVQLREMSAFALGRLAQDM----HNQAGIAHNGGLVPLLKLLD----SKNGSLQHNAAFALYGL 197 (513)
Q Consensus 130 ~i~~L~~~l~~~----~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~i~~L~~ll~----~~~~~~~~~a~~~L~~l 197 (513)
.+..+..+++++ .+.++..|.-+++++.... +..........++.+...+. ..+...+..++.+|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 466777777753 5677888887777776311 11111111234444444442 33444456677788876
Q ss_pred ccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHH-H--hhcchhhhHHHHHhhccCC
Q 010291 198 ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-V--AEKGVQRRVALALAHLCSP 274 (513)
Q Consensus 198 ~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~-~--~~~~v~~~a~~aL~~l~~~ 274 (513)
.... .++.+..++. . .+..+|..|+++|..++..
T Consensus 474 g~~~-------------------------------------------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~ 510 (574)
T smart00638 474 GHPS-------------------------------------------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKR 510 (574)
T ss_pred CChh-------------------------------------------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 6422 2222333333 1 2445788888888777532
Q ss_pred CCcceeeecCCchHHHHhhhcC--CCcchhhhHHHHHHH
Q 010291 275 DDQRTIFIDGGGLELLLGLLGS--TNPKQQLDGAVALFK 311 (513)
Q Consensus 275 ~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~ 311 (513)
.+ ..+-+.|+.+..+ .++++|..|..+|..
T Consensus 511 ~p-------~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 511 DP-------RKVQEVLLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred Cc-------hHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 11 1234556666654 566777666655543
No 294
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=79.59 E-value=7.6 Score=31.40 Aligned_cols=71 Identities=11% Similarity=0.114 Sum_probs=55.6
Q ss_pred ChhHHHHhhccCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhhc
Q 010291 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVH 74 (513)
Q Consensus 4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~~l~~ 74 (513)
++..|..-|+++++.++..|+..|-.+..+ .......+...+.+..|..++... .+.|+..++..+..-+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 355667778889999999999999999886 355677788888899999988843 23488888888877653
No 295
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=79.35 E-value=22 Score=34.59 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc---CCCHHHHHHHHHHHHHhhcCChhH------------HHH
Q 010291 18 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR---SEDSAIHYEAVGVIGNLVHSSPNI------------KKE 82 (513)
Q Consensus 18 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~v~~~a~~~L~~l~~~~~~~------------~~~ 82 (513)
.-|..|+..+..+++..+.....+.. +.+..++.-.. +.+..-+..|+..++.++...... -..
T Consensus 226 TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 34667778888888642222222211 12333322111 346678888999999998754321 233
Q ss_pred HHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHH
Q 010291 83 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 153 (513)
Q Consensus 83 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L 153 (513)
+....++|-|. --.+..+-++..|++.+...-..-+. ..+. ++++.++.+|.+++..+...|+.++
T Consensus 305 Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l~--~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQLL--QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHHH--HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHHH--HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 33444455444 11134567888899988888644332 2222 4899999999999999998888764
No 296
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=78.89 E-value=18 Score=30.26 Aligned_cols=142 Identities=11% Similarity=0.131 Sum_probs=73.9
Q ss_pred hhHHHHhhccC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291 5 IPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 83 (513)
Q Consensus 5 i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 83 (513)
++.|.++|+.+ ++.+|.+++++|+.+..=+|.....+....- .-. -...+.......... .... + ..+..
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~~--~~~~~~~~~~~~l~~-~~~~---~-~~ee~ 82 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SKS--SENSNDESTDISLPM-MGIS---P-SSEEY 82 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--ccc--cccccccchhhHHhh-ccCC---C-chHHH
Confidence 45666777654 6899999999999997644443332221110 000 001111111111110 1111 1 12333
Q ss_pred HhCCChHHHHHhhcCCCh-HHHHHHHHHHHHhhcC-CchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010291 84 LAAGALQPVIGLLSSCCS-ESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 157 (513)
Q Consensus 84 ~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 157 (513)
.-..++..|+..|+++.- .-...++.++.++... ...+.. .-..++|.++..++..++..++....-|..|.
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~--~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVP--YLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchh--HHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 334467778888776542 2333455555555522 122222 22347889999998777788888777777664
No 297
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=78.34 E-value=24 Score=30.30 Aligned_cols=111 Identities=24% Similarity=0.269 Sum_probs=74.8
Q ss_pred hHHHH-hhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcC-------------------CHHHHHHhhc-CCCHHHHHH
Q 010291 6 PPLVE-LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN-------------------ALPTLILMLR-SEDSAIHYE 64 (513)
Q Consensus 6 ~~Lv~-lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g-------------------~i~~Lv~lL~-~~~~~v~~~ 64 (513)
+.|+. ++.++++.+|..|+.++..+..+....-...-+.+ .-..|+..|. ..+..+...
T Consensus 42 ~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q 121 (182)
T PF13251_consen 42 PSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQ 121 (182)
T ss_pred cchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 34444 45788999999999999999886433222221111 1123444555 346778889
Q ss_pred HHHHHHHhhcCChhHHHHHHhCCCh----HHHHHhhcCCChHHHHHHHHHHHHhhcCCc
Q 010291 65 AVGVIGNLVHSSPNIKKEVLAAGAL----QPVIGLLSSCCSESQREAALLLGQFAATDS 119 (513)
Q Consensus 65 a~~~L~~l~~~~~~~~~~~~~~g~i----~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 119 (513)
.+.+|..+....+..|-. .|.+ ..+..++.+.|.+++..+..+++.+.+..+
T Consensus 122 ~lK~la~Lv~~tPY~rL~---~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 122 LLKCLAVLVQATPYHRLP---PGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHccCChhhcC---HhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 999999999888876432 3444 445556678899999999999998875544
No 298
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=78.05 E-value=23 Score=28.64 Aligned_cols=71 Identities=11% Similarity=0.139 Sum_probs=56.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh-HHHHHHhCCChHHHHHhhcC---CChHHHHHHHHHHHHhhc
Q 010291 46 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN-IKKEVLAAGALQPVIGLLSS---CCSESQREAALLLGQFAA 116 (513)
Q Consensus 46 ~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~L~~ll~~---~~~~~~~~a~~~L~~l~~ 116 (513)
++..|-.-|+++++.++..|+.+|-.+..+... ....+.....+..++.++.. .+.+++..+...+.+...
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 467778888899999999999999999987755 55666666777788888875 467899999888888763
No 299
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=77.77 E-value=58 Score=29.94 Aligned_cols=217 Identities=14% Similarity=0.093 Sum_probs=116.6
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291 7 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKEVL 84 (513)
Q Consensus 7 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 84 (513)
.|=..|.++++.+|.+|+..|......-+... ....-+..|++...+ .+......++.++..|.....-.....
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~- 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA- 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH-
Confidence 44567888999999999999998876433221 222224555554432 345555555777766663322111110
Q ss_pred hCCChHHHHHhhc--CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHhhccc
Q 010291 85 AAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMH 161 (513)
Q Consensus 85 ~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~ 161 (513)
...+..+.+-.. +.....|..+-..+..+........ .-...+.+..+++.+.. .||.-...+...+..+...-+
T Consensus 79 -~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 79 -VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred -HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 112222222111 1234567777777877764432222 11234577788888875 488877777777777765444
Q ss_pred cchhhHhcCChHHHHHHhcC---------C-CH-HH-HHHHHHHHHh-cccCcchHHHHHhhcCcccccchhhhhhhhHH
Q 010291 162 NQAGIAHNGGLVPLLKLLDS---------K-NG-SL-QHNAAFALYG-LADNEDNVADFIRVGGVQKLQDGEFIVQATKD 228 (513)
Q Consensus 162 ~~~~~~~~~~i~~L~~ll~~---------~-~~-~~-~~~a~~~L~~-l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~ 228 (513)
. ....+.+.+.+.. + ++ .+ ++.-..+|.+ ++.++
T Consensus 157 ~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~--------------------------- 203 (262)
T PF14500_consen 157 I------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP--------------------------- 203 (262)
T ss_pred c------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH---------------------------
Confidence 2 1223334433321 1 11 11 1111111211 11122
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccC
Q 010291 229 CVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 273 (513)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 273 (513)
......+|.|++-|.++.+.++..++.+|..++.
T Consensus 204 -----------~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 204 -----------LFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIE 237 (262)
T ss_pred -----------hhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 1234578888898998888899999988887654
No 300
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=77.50 E-value=8.5 Score=31.59 Aligned_cols=71 Identities=14% Similarity=0.167 Sum_probs=59.2
Q ss_pred CChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc--chhhHhcCChHHHHHHhcC-CCHHHHHHHHHHHHhccc
Q 010291 129 GAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLAD 199 (513)
Q Consensus 129 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~ 199 (513)
.++..|.+.+.++++.++..|+..|..+..+... +..+.....+..|.+++.. .+..++..++..+...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 3577888999999999999999999999976654 5667778888899999987 678899999988877653
No 301
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=77.20 E-value=12 Score=38.94 Aligned_cols=132 Identities=19% Similarity=0.166 Sum_probs=76.8
Q ss_pred hhHHHHhhccC----CHHHHHHHHHHHHHhhcc---CchhHHHHHhcCCHHHHHHhhc----CCCHHHHHHHHHHHHHhh
Q 010291 5 IPPLVELLEFT----DTKVQRAAAGALRTLAFK---NDENKNQIVECNALPTLILMLR----SEDSAIHYEAVGVIGNLV 73 (513)
Q Consensus 5 i~~Lv~lL~~~----~~~~~~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~Lv~lL~----~~~~~v~~~a~~~L~~l~ 73 (513)
+..+.++++++ .+.++..|+-+++.+... +.......+....++.+.+.|. ..+.+-+...+.+|+|+.
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 474 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG 474 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence 34455555542 345666666666655531 1111101112235666666554 345566777888888886
Q ss_pred cCChhHHHHHHhCCChHHHHHhhc-C--CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC--CCHHHHHH
Q 010291 74 HSSPNIKKEVLAAGALQPVIGLLS-S--CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREM 148 (513)
Q Consensus 74 ~~~~~~~~~~~~~g~i~~L~~ll~-~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~~~~~~~ 148 (513)
.. . .+..+..++. + ....+|..|+++|..++...+.. +-+.+++++.+ .++++|..
T Consensus 475 ~~--~---------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRia 535 (574)
T smart00638 475 HP--S---------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMA 535 (574)
T ss_pred Ch--h---------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHH
Confidence 43 2 3445555554 2 34679999999999997554542 34456666665 47889888
Q ss_pred HHHHHHH
Q 010291 149 SAFALGR 155 (513)
Q Consensus 149 a~~~L~~ 155 (513)
|..+|..
T Consensus 536 A~~~lm~ 542 (574)
T smart00638 536 AVLVLME 542 (574)
T ss_pred HHHHHHh
Confidence 7766655
No 302
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=76.77 E-value=4.9 Score=37.11 Aligned_cols=108 Identities=17% Similarity=0.169 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHHhhccCchhHHHHHhc-C-CHHHHHHhhcCC----CHHHHHHHHHHHHHhhcCChhHH-HHHHhCC
Q 010291 15 TDTKVQRAAAGALRTLAFKNDENKNQIVEC-N-ALPTLILMLRSE----DSAIHYEAVGVIGNLVHSSPNIK-KEVLAAG 87 (513)
Q Consensus 15 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g-~i~~Lv~lL~~~----~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g 87 (513)
..+..+..+++++.|+-. ++..+..+... + .+...+..+... +..+|..++..+.|++......+ ..-.+..
T Consensus 122 ~~~~~~ml~lR~l~NlF~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ 200 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFS-HPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE 200 (268)
T ss_dssp SSHHHHHHHHHHHHHHTT-SCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH
T ss_pred CcHHHHHHHHHHHHHhhC-CCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 467889999999999987 56666665553 2 333333333333 78999999999999974321111 0001111
Q ss_pred ChHHHHHhhc-C-CChHHHHHHHHHHHHhhcCCchhhH
Q 010291 88 ALQPVIGLLS-S-CCSESQREAALLLGQFAATDSDCKV 123 (513)
Q Consensus 88 ~i~~L~~ll~-~-~~~~~~~~a~~~L~~l~~~~~~~~~ 123 (513)
.+..+.+.+. . .+++....++.+|+++...++....
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~ 238 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQ 238 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHH
Confidence 3455566332 2 6899999999999999966544333
No 303
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=76.33 E-value=18 Score=38.50 Aligned_cols=162 Identities=17% Similarity=0.210 Sum_probs=102.5
Q ss_pred hHHHHHhcCCHHHHHHhhcC--------CCHHHHHHHHHHHHHhhcCChhHHHHHHhC--------CChHHHHHhhcC--
Q 010291 37 NKNQIVECNALPTLILMLRS--------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--------GALQPVIGLLSS-- 98 (513)
Q Consensus 37 ~~~~i~~~g~i~~Lv~lL~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--------g~i~~L~~ll~~-- 98 (513)
..+.+.+.+++..++++... +..+....|+..|.-+..- +..+..+... .|+..++..-..
T Consensus 593 ~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~ 671 (1516)
T KOG1832|consen 593 AAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGSN 671 (1516)
T ss_pred HHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeecccccc
Confidence 34556777888888888763 2246777888888777654 5666555532 256666554432
Q ss_pred --CChHHHHHHHHHHHHhhcCCchhhHHHHh-----cCChHHHHHHhC-CCCHHHHHHHHHHHHHHhhccccchhhHhcC
Q 010291 99 --CCSESQREAALLLGQFAATDSDCKVHIVQ-----RGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIAHNG 170 (513)
Q Consensus 99 --~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-----~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 170 (513)
-+++++..|+.++.|+....|+++...+. +|--.. .+. .+.....++...-.++- +....
T Consensus 672 ~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~---~l~~~~ks~~le~~l~~mw~~---------Vr~nd 739 (1516)
T KOG1832|consen 672 SIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI---FLGAGTKSAKLEQVLRQMWEA---------VRGND 739 (1516)
T ss_pred cccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc---cccCCCchHHHHHHHHHHHHH---------HhcCc
Confidence 37899999999999998676665543221 010000 011 11223334444444443 33457
Q ss_pred ChHHHHHHhcCCC-----HHHHHHHHHHHHhcccCcchHHHHHhhc
Q 010291 171 GLVPLLKLLDSKN-----GSLQHNAAFALYGLADNEDNVADFIRVG 211 (513)
Q Consensus 171 ~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~g 211 (513)
+|..|+++++... +.++.-|+.+|.-|++++..+..+.+.-
T Consensus 740 GIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLp 785 (1516)
T KOG1832|consen 740 GIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKLP 785 (1516)
T ss_pred cHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCc
Confidence 8889999998654 5788999999999999887766665543
No 304
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=75.93 E-value=65 Score=29.59 Aligned_cols=164 Identities=12% Similarity=0.082 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhhcc-------CchhHHHHHhcCCHHHHHHhhcCCC----HHHHHHHHHHHHHhhcCChhHHHHHHhCC
Q 010291 19 VQRAAAGALRTLAFK-------NDENKNQIVECNALPTLILMLRSED----SAIHYEAVGVIGNLVHSSPNIKKEVLAAG 87 (513)
Q Consensus 19 ~~~~a~~~L~~l~~~-------~~~~~~~i~~~g~i~~Lv~lL~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 87 (513)
....++..|..++.- +.+.+-.+.-.+.+|.++.-+.+++ ......++..|..+|.... .+
T Consensus 78 t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~ 149 (262)
T PF14225_consen 78 TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LP 149 (262)
T ss_pred cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------Cc
Confidence 345566666666542 2223333333455677777776555 1344456677777774311 12
Q ss_pred ChHHHHHhhcCC----ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccc
Q 010291 88 ALQPVIGLLSSC----CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 163 (513)
Q Consensus 88 ~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 163 (513)
.+..++...... ..+....++..|+.-.. |.. +...+..|+.++..+.+.++..+..+|..+-..-+.+
T Consensus 150 ~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~ 222 (262)
T PF14225_consen 150 NLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR 222 (262)
T ss_pred cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--chh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC
Confidence 344444433322 23444445555544321 222 1234667899999998999999999999998766655
Q ss_pred hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 010291 164 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 198 (513)
Q Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 198 (513)
.. .....+.++.++++++...-....+..+...+
T Consensus 223 ~~-~~~dlispllrlL~t~~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 223 SP-HGADLISPLLRLLQTDLWMEALEVLDEIVTRS 256 (262)
T ss_pred CC-cchHHHHHHHHHhCCccHHHHHHHHHHHHhhc
Confidence 44 44457888999998776544344444444444
No 305
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=75.03 E-value=85 Score=30.50 Aligned_cols=83 Identities=12% Similarity=0.091 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCChhHHHH-HHhCCCh
Q 010291 16 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHSSPNIKKE-VLAAGAL 89 (513)
Q Consensus 16 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~g~i 89 (513)
+..+..+|+.+|.|+..+++..+....+......+++.+.. ...++...-++.|.-++.-....|.. +.+.+|+
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 44788999999999999999999988888777777765542 23455666666676666544555554 5567899
Q ss_pred HHHHHhhcC
Q 010291 90 QPVIGLLSS 98 (513)
Q Consensus 90 ~~L~~ll~~ 98 (513)
+.+.+.+++
T Consensus 190 ~~lt~~led 198 (532)
T KOG4464|consen 190 ELLTNWLED 198 (532)
T ss_pred HHHHHHhhc
Confidence 999999874
No 306
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=74.21 E-value=48 Score=37.02 Aligned_cols=147 Identities=17% Similarity=0.136 Sum_probs=85.6
Q ss_pred ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHH-HHhcCCHHHHHHhhc-----C---C--CHHHHHHHHHHHHHh
Q 010291 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ-IVECNALPTLILMLR-----S---E--DSAIHYEAVGVIGNL 72 (513)
Q Consensus 4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~-i~~~g~i~~Lv~lL~-----~---~--~~~v~~~a~~~L~~l 72 (513)
.++.|+..+-++.+.+|..+..++..+...+...... ..+. ..-.++..+. + + -..||+.++++|..+
T Consensus 78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led-~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~ 156 (1549)
T KOG0392|consen 78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLED-LLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAY 156 (1549)
T ss_pred HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHH-HHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence 4567777778899999999999999987643322111 1111 1112222111 1 1 136889999999888
Q ss_pred hcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHh---cCChHHHHHHhCCCCHHHHHHH
Q 010291 73 VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ---RGAVRPLIEMLQSPDVQLREMS 149 (513)
Q Consensus 73 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~~L~~~l~~~~~~~~~~a 149 (513)
..+-...+ + .-.+..+.+++....++++...+..+..... .+..+.. ..+++..+.-+.+.+.+++..|
T Consensus 157 l~~~~~s~--~--~~~~~il~q~~~q~~w~ir~Ggll~iky~~a----ir~d~l~~~~~~vl~~~i~~L~ds~ddv~~~a 228 (1549)
T KOG0392|consen 157 LKHMDESL--I--KETLDILLQMLRQPNWEIRHGGLLGIKYNVA----IRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVA 228 (1549)
T ss_pred HHhhhhHh--h--HHHHHHHHHHHcCcchhheechHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhcchHHHHHH
Confidence 76532211 1 1246677777777766665444443333321 1111111 1346677778888888999888
Q ss_pred HHHHHHHhhc
Q 010291 150 AFALGRLAQD 159 (513)
Q Consensus 150 ~~~L~~l~~~ 159 (513)
+..+.-....
T Consensus 229 a~~l~~~~s~ 238 (1549)
T KOG0392|consen 229 AQFLVPAPSI 238 (1549)
T ss_pred HHHhhhhhHH
Confidence 8888777643
No 307
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=73.80 E-value=57 Score=27.94 Aligned_cols=75 Identities=19% Similarity=0.179 Sum_probs=50.9
Q ss_pred hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH
Q 010291 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 79 (513)
Q Consensus 5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 79 (513)
+|.+++=|...+..-+.-|...+..+.......+..-+-...|.++-..|.+.++++...++.+|..|+..++..
T Consensus 40 Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 40 LPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred HHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 455555565556666777777777777641222222223456777778888999999999999999997654543
No 308
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=73.34 E-value=33 Score=25.90 Aligned_cols=67 Identities=22% Similarity=0.175 Sum_probs=52.2
Q ss_pred hcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHH
Q 010291 127 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFA 193 (513)
Q Consensus 127 ~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~ 193 (513)
..+.+..|+..++.+++...+.+...+..+...+.....+.+-|+...|.++-...++..+...-..
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~i 94 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEI 94 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4567788999999888888999999999999999888888888888887777655555554444333
No 309
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=73.20 E-value=10 Score=28.65 Aligned_cols=60 Identities=15% Similarity=0.274 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHhcC------------ChhhHHHHHHHHHh--cCcHHHHHHHHHHHHHHHH
Q 010291 417 QDLLRAADQYLLEGLKRLCEYTIAQDI------------SLENVSSMYELSEA--FHAISLRHTCILYIMEHFD 476 (513)
Q Consensus 417 ~~ll~~A~~~~~~~l~~~c~~~l~~~~------------~~~n~~~~~~~a~~--~~~~~L~~~~~~~i~~~~~ 476 (513)
.+++..|+.|+.+.|.+.|.+++..++ +.+....++.--+. .+-.++.+.+.+|+..+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~ 75 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPE 75 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHH
Confidence 468899999999999999999998754 23434444432222 1335788999999986543
No 310
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=72.84 E-value=78 Score=29.08 Aligned_cols=68 Identities=21% Similarity=0.140 Sum_probs=50.3
Q ss_pred hhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcCCCcchhhhHHHHHHHhh
Q 010291 242 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 313 (513)
Q Consensus 242 ~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 313 (513)
+...+..|+.+|..+.+.+|..+..+|..+-...+.+.. ...+.+..|.++++++... +|..+|-...
T Consensus 186 ~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~~~~---eAL~VLd~~v 253 (262)
T PF14225_consen 186 EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTDLWM---EALEVLDEIV 253 (262)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCccHH---HHHHHHHHHH
Confidence 345677889999998899999999999999776554433 6667899999999885543 4555554443
No 311
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=72.76 E-value=3.2 Score=37.67 Aligned_cols=86 Identities=19% Similarity=0.332 Sum_probs=58.6
Q ss_pred CcccEEEEecCeeehhhHHHHhhcC-HHHHHhccCCCC---CCCCCceec-CCCCHHHHHHHHHHHhcCccccCHH-HHH
Q 010291 344 TLSDVTFLVEGRRFYAHRICLLASS-DAFRAMFDGGYR---EKDARDIEI-PNIRWEVFELMMRFIYTGSVDVTLD-IAQ 417 (513)
Q Consensus 344 ~~~Dv~~~~~~~~~~~h~~il~~~s-~~f~~~~~~~~~---e~~~~~i~l-~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~ 417 (513)
...-++..+++..|.+.+.+|.+.- ...-.||.+++. .+...+.++ ++++...|+.+|+|--+|.+..++. .+.
T Consensus 94 ~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvp 173 (438)
T KOG3840|consen 94 EGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVS 173 (438)
T ss_pred CCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCchH
Confidence 3345666677777777777776432 234466766532 233456766 4699999999999999999876543 467
Q ss_pred HHHHHHHHhcHH
Q 010291 418 DLLRAADQYLLE 429 (513)
Q Consensus 418 ~ll~~A~~~~~~ 429 (513)
+|-+++||+.++
T Consensus 174 ELrEACDYLlip 185 (438)
T KOG3840|consen 174 ELREACDYLLVP 185 (438)
T ss_pred HHHhhcceEEee
Confidence 777788777653
No 312
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=72.39 E-value=5.3 Score=30.57 Aligned_cols=44 Identities=27% Similarity=0.343 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHH
Q 010291 20 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 64 (513)
Q Consensus 20 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 64 (513)
...+++.+..++. .|+....+++.|+++.|+.+|.++|.++...
T Consensus 63 Ld~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 63 LDEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 3456788888887 7899999999999999999999988876543
No 313
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=71.87 E-value=16 Score=29.69 Aligned_cols=69 Identities=20% Similarity=0.211 Sum_probs=55.6
Q ss_pred ChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc--chhhHhcCChHHHHHHhcC------CCHHHHHHHHHHHHhcc
Q 010291 130 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLDS------KNGSLQHNAAFALYGLA 198 (513)
Q Consensus 130 ~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~------~~~~~~~~a~~~L~~l~ 198 (513)
++..+.+.++++++.++..|+.+|-.+..+... +..+...+.+..|++++.. .+..++..++..+..-+
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999876543 5667778888889999963 45788888888776554
No 314
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=71.47 E-value=9.4 Score=33.60 Aligned_cols=91 Identities=15% Similarity=0.127 Sum_probs=56.3
Q ss_pred EEEEecCeeehhhHH-HHhhcCHHHHHhccCCCC--CCCCCceecCCCCHHHHHHHHHHHhcCccccCH--HHHHHHHHH
Q 010291 348 VTFLVEGRRFYAHRI-CLLASSDAFRAMFDGGYR--EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTL--DIAQDLLRA 422 (513)
Q Consensus 348 v~~~~~~~~~~~h~~-il~~~s~~f~~~~~~~~~--e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~--~~~~~ll~~ 422 (513)
+.+.+||+.|..-.. ...-.-....+||++... ........++ =+-..|+.+++|+-+....++. .++..+.+.
T Consensus 11 v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fID-RDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~rE 89 (221)
T KOG2723|consen 11 VELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFID-RDGFLFRYVLDYLRTKALLLPEDFAEVERLVRE 89 (221)
T ss_pred eeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEEc-CCcchHHHHHHHhcccccccchhhhhHHHHHHH
Confidence 334456654443322 233344455667765221 1222233332 2567899999999996666665 568999999
Q ss_pred HHHhcHHHHHHHHHHHH
Q 010291 423 ADQYLLEGLKRLCEYTI 439 (513)
Q Consensus 423 A~~~~~~~l~~~c~~~l 439 (513)
|++|+++.+.....+..
T Consensus 90 A~f~~l~~~~~~l~~~~ 106 (221)
T KOG2723|consen 90 AEFFQLEAPVTYLLNSG 106 (221)
T ss_pred HHHHccccHHHHHhccc
Confidence 99999998877654443
No 315
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=70.07 E-value=18 Score=29.58 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=57.3
Q ss_pred CChHHHHHHhCCCCHHHHHHHHHHHHHHhhccc--cchhhHhcCChHHHHHHhc-CCCHHHHHHHHHHHHhccc
Q 010291 129 GAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH--NQAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLAD 199 (513)
Q Consensus 129 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~ 199 (513)
.++..|.+.++++++.++..|+..|..+..+.. -...+...+.++.|.+++. ..++.++..++..+..-+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 357789999999999999999999999987653 3566777888888999887 4567888888888876653
No 316
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=69.92 E-value=1.1e+02 Score=37.32 Aligned_cols=262 Identities=15% Similarity=0.116 Sum_probs=126.8
Q ss_pred hhccCCHHHHHHHHHHHHHhhccCchhHHHH----H--hcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291 11 LLEFTDTKVQRAAAGALRTLAFKNDENKNQI----V--ECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEV 83 (513)
Q Consensus 11 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i----~--~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 83 (513)
.+...+++++..+...+..+...... .... . ...++..+..+-. ++++.++......+. +..-...
T Consensus 489 ~~~~~~~e~r~~~~l~~~~ll~~~~~-~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~l 561 (2341)
T KOG0891|consen 489 YLEADDSEIRKNAALTCCELLKYDII-CSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQL 561 (2341)
T ss_pred HHhcccHHHHHHHHHHHHHHHhhhhh-hhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhh
Confidence 34556788888887766666553222 1110 0 1112222222222 456666666555543 1111234
Q ss_pred HhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccc
Q 010291 84 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 163 (513)
Q Consensus 84 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 163 (513)
.+.+.+..+...+.+....++..+...+++++..+|.....-...-.+..+-++-.+.-..+...+..-+..+.......
T Consensus 562 aQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~ 641 (2341)
T KOG0891|consen 562 AQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVL 641 (2341)
T ss_pred cCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHH
Confidence 44455666777777788888999999999998877743222222112222222222222222222222222222111111
Q ss_pred hhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhh
Q 010291 164 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 243 (513)
Q Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (513)
..-.-...+..++..+.+.+..+...++.++..||...... +...+ +
T Consensus 642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~--------~~~~~------------------------~- 688 (2341)
T KOG0891|consen 642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEE--------MVKWV------------------------D- 688 (2341)
T ss_pred HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccch--------hhhcc------------------------c-
Confidence 11111223345666667777777777888888887633210 00000 1
Q ss_pred hhHHHHHHHHHH-hhcchhhhHHHHHhhccCCCCc--ceeeecCCchHHHHhhhcC-CCcchhhhHHHHHHHh
Q 010291 244 RVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDDQ--RTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALFKL 312 (513)
Q Consensus 244 ~~l~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~~~~--~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l 312 (513)
..++.+...+.+ ++..-+.++.++++++++.... .......-++..|...+.. ....++..+...+.++
T Consensus 689 ~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~ 761 (2341)
T KOG0891|consen 689 ELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLL 761 (2341)
T ss_pred hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhh
Confidence 122223333333 5566688889999999865442 1122222344555555554 3444555555555544
No 317
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.38 E-value=1.5e+02 Score=31.08 Aligned_cols=146 Identities=16% Similarity=0.115 Sum_probs=90.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHh--hccccchhhHh---cCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHH
Q 010291 132 RPLIEMLQSPDVQLREMSAFALGRLA--QDMHNQAGIAH---NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD 206 (513)
Q Consensus 132 ~~L~~~l~~~~~~~~~~a~~~L~~l~--~~~~~~~~~~~---~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 206 (513)
|.|..-|+.++..+|.+|+..+.++- .+++....-.+ ..-...+.++|+++-+.++..|..-+..... .
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s------~ 250 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITS------K 250 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH------H
Confidence 45566677889999999999999986 33322111111 1224458889999888888877665543321 1
Q ss_pred HHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHH----HHHHH-HhhcchhhhHHHHHhhccCCCCcceee
Q 010291 207 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHL----LYLMR-VAEKGVQRRVALALAHLCSPDDQRTIF 281 (513)
Q Consensus 207 ~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L----v~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~l 281 (513)
+. +++-..++..+ ..-+. ++..+||......|..+...+.....+
T Consensus 251 fW------------------------------e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~l 300 (1005)
T KOG1949|consen 251 FW------------------------------EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLL 300 (1005)
T ss_pred HH------------------------------HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHH
Confidence 11 11112222222 22222 255688888888888887776655433
Q ss_pred ecCCchHHHHhhhcCCCcchhhhHHHHHHHhhhc
Q 010291 282 IDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 315 (513)
Q Consensus 282 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 315 (513)
..++|.|-..|.+++..+|.++...|..+-..
T Consensus 301 --e~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 301 --EQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred --HHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 23567777888888889988888877776443
No 318
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=68.29 E-value=14 Score=30.14 Aligned_cols=70 Identities=14% Similarity=0.184 Sum_probs=53.9
Q ss_pred hhHHHHhhccCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCCHHHHHHhhcC-CCHH---HHHHHHHHHHHhhc
Q 010291 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS-EDSA---IHYEAVGVIGNLVH 74 (513)
Q Consensus 5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~-~~~~---v~~~a~~~L~~l~~ 74 (513)
+..|..-|+++++.++..|+..|-.+..+. +.....+.....+..|..++.+ .... |+..++..+..-+.
T Consensus 44 ~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 44 ARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 456667788899999999999999998864 4667777777888889998874 3333 88888888776654
No 319
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=68.23 E-value=9.2 Score=29.39 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=28.6
Q ss_pred ChhhHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q 010291 444 SLENVSSMYELSEAFHAISLRHTCILYIMEH 474 (513)
Q Consensus 444 ~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~ 474 (513)
+.+++..++.+|..|+.+.|.+.|.+++.++
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 3889999999999999999999999999876
No 320
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=68.08 E-value=42 Score=35.13 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=79.4
Q ss_pred cCCHHHHHHhhc-C-------CCHHHHHHHHHHHHHhhc--CChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHH
Q 010291 44 CNALPTLILMLR-S-------EDSAIHYEAVGVIGNLVH--SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 113 (513)
Q Consensus 44 ~g~i~~Lv~lL~-~-------~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~ 113 (513)
.|+++.++..|. + .++.-.+.|++.+.++.. ....-...+++.=+++.++..++++..-++..||..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 477888888884 1 234455667777777754 222223444455567777778888888899999999998
Q ss_pred hhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchh
Q 010291 114 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG 165 (513)
Q Consensus 114 l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~ 165 (513)
+..+-+. ...-..+.+...+++++++..++..|+-++.-+-.+.+...+
T Consensus 487 ~eeDfkd---~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k 535 (970)
T COG5656 487 IEEDFKD---NGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEK 535 (970)
T ss_pred HHHhccc---chHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHH
Confidence 8533222 222234566778888888888888888888888776654433
No 321
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.69 E-value=95 Score=32.51 Aligned_cols=142 Identities=12% Similarity=0.057 Sum_probs=86.7
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhcc-Cch----hHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291 8 LVELLEFTDTKVQRAAAGALRTLAFK-NDE----NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 82 (513)
Q Consensus 8 Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~----~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 82 (513)
|-+-|+-+|..+|.+|+..+.++--- +|+ ....+.+. -...+..+|.++-+.+|..|+.-+..+... -..
T Consensus 179 l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~----fWe 253 (1005)
T KOG1949|consen 179 LWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSK----FWE 253 (1005)
T ss_pred HHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHH----HHH
Confidence 44556778999999999999887421 222 23333333 256788899999999999998887777632 122
Q ss_pred HHhCCChHHHHHhhc-----CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010291 83 VLAAGALQPVIGLLS-----SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 157 (513)
Q Consensus 83 ~~~~g~i~~L~~ll~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 157 (513)
++-..++..++..+- +...++|......|..+.. +|.....+- -++|.+-..|.++...+|..+...|..+-
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~-np~sh~~le--~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD-NPLSHPLLE--QLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-CccchhHHH--HHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 322223333333222 2335777777677777753 343222221 24556666667778888888887777664
No 322
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=67.02 E-value=65 Score=29.60 Aligned_cols=146 Identities=16% Similarity=0.082 Sum_probs=76.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcC--CChHHHHHHHHHHHHhhcCCchhhHHHH
Q 010291 49 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIV 126 (513)
Q Consensus 49 ~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 126 (513)
.|-..|.++++.+|..|+.+|+.+...-+... ....-+..|+.+..+ .|......++.++..|.....-....
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-- 77 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-- 77 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh--
Confidence 45567788999999999999998876554321 222234555555443 34444444455555555221111111
Q ss_pred hcCChHHHHHHhC--CCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcC-CCHHHHHHHHHHHHhccc
Q 010291 127 QRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLAD 199 (513)
Q Consensus 127 ~~~~i~~L~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~ 199 (513)
....+..+.+... +-....|..+...+..+..+....-.-.....+..+++.+.. +||.-...+...+..+..
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 1112333333222 124467788888888887643221111122345556666653 466665655555555543
No 323
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=66.80 E-value=1.1e+02 Score=31.79 Aligned_cols=103 Identities=20% Similarity=0.115 Sum_probs=52.3
Q ss_pred CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291 3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 82 (513)
Q Consensus 3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 82 (513)
+++..+=+.+-++++.++..|+-.++-...+..+-+. -+...|-..+.+++..+|..|+.-|+-.-.++. ++.
T Consensus 415 ~gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~d-----palALLsdyv~~~~s~~ri~aIlGLglayaGsq--~e~ 487 (878)
T KOG2005|consen 415 KGLEQLDKYLYSDESYIKAGALLGIGISNSGVFNECD-----PALALLSDYLQSSSSIHRIGAILGLGLAYAGSQ--REE 487 (878)
T ss_pred hhHHHHHHHhhcCCchhhhccceeeeeeccccccccC-----HHHHHHHHhccCCCceeehHHhhhhHHhhcCCc--hHH
Confidence 3455555555555666665555544433332111110 112334445556677777777776665544322 233
Q ss_pred HHhCCChHHHHHhhcCCC--hHHHHHHHHHHHHhhcC
Q 010291 83 VLAAGALQPVIGLLSSCC--SESQREAALLLGQFAAT 117 (513)
Q Consensus 83 ~~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~ 117 (513)
+. ..|..++.+.+ .++...|..+|+.+..+
T Consensus 488 V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvG 519 (878)
T KOG2005|consen 488 VL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVG 519 (878)
T ss_pred HH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEe
Confidence 32 14555665544 34666666666666533
No 324
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.49 E-value=8.2 Score=36.18 Aligned_cols=61 Identities=8% Similarity=0.021 Sum_probs=52.1
Q ss_pred HHHHHHHhhcCChhHHHHHHhCCChHHHHHh--hcCCChHHHHHHHHHHHHhhcCCchhhHHH
Q 010291 65 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGL--LSSCCSESQREAALLLGQFAATDSDCKVHI 125 (513)
Q Consensus 65 a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l--l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 125 (513)
..+.++++|...+..++.+.+.||++.++.- +++.+|-+++.+..++.+|...+.+++..+
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i 438 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKII 438 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHH
Confidence 5678999999999999999999999988774 446788999999999999998887776654
No 325
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=66.28 E-value=1.3e+02 Score=29.26 Aligned_cols=177 Identities=16% Similarity=0.125 Sum_probs=91.8
Q ss_pred hccCCHHHHHHHHHHHHHhhccCch--hHHHHHhcCCHHHHHHhhc----C-------CCHHHHHHHHHHHHHhhcCChh
Q 010291 12 LEFTDTKVQRAAAGALRTLAFKNDE--NKNQIVECNALPTLILMLR----S-------EDSAIHYEAVGVIGNLVHSSPN 78 (513)
Q Consensus 12 L~~~~~~~~~~a~~~L~~l~~~~~~--~~~~i~~~g~i~~Lv~lL~----~-------~~~~v~~~a~~~L~~l~~~~~~ 78 (513)
|.+.+...|..|-..|.+.-+.... ....+.+ -++.+++.++ + .+..+..+|+++|+.+..+ +.
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~~ 78 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-PE 78 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-HH
Confidence 3455667777787777776553221 1222222 2444444433 2 2567888999999999865 44
Q ss_pred HHHHHHhCC---ChHHHHHhhcCC--ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHh---C--CCCHHHHHH
Q 010291 79 IKKEVLAAG---ALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML---Q--SPDVQLREM 148 (513)
Q Consensus 79 ~~~~~~~~g---~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l---~--~~~~~~~~~ 148 (513)
.-..+-..- .+...+..+.++ +..+....+|+|..=- .++. ++....+..++..+ . -++..+...
T Consensus 79 i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~-f~~~----~~~~~~~~~l~~~l~~i~~~~~s~si~~e 153 (372)
T PF12231_consen 79 IVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK-FSPK----IMTSDRVERLLAALHNIKNRFPSKSIISE 153 (372)
T ss_pred HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CCCc----ccchhhHHHHHHHHHHhhccCCchhHHHH
Confidence 322222211 233444444333 2345555555554432 1121 22333444444433 2 245667788
Q ss_pred HHHHHHHHhhccccchhhHhc--CChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 010291 149 SAFALGRLAQDMHNQAGIAHN--GGLVPLLKLLDSKNGSLQHNAAFALYGLA 198 (513)
Q Consensus 149 a~~~L~~l~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 198 (513)
.+.++.++....+. .+.+. --++.++..+-+....++..|...+..+.
T Consensus 154 rL~i~~~ll~q~p~--~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 154 RLNIYKRLLSQFPQ--QMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 88888888764433 23322 23556666665666666666655554443
No 326
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=66.01 E-value=22 Score=31.32 Aligned_cols=118 Identities=12% Similarity=0.095 Sum_probs=50.8
Q ss_pred hhHHHHHhcCCHHHHHHhhcC---CC---------------HHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhc
Q 010291 36 ENKNQIVECNALPTLILMLRS---ED---------------SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 97 (513)
Q Consensus 36 ~~~~~i~~~g~i~~Lv~lL~~---~~---------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~ 97 (513)
..+..+.+.|++..++.+|+. .. ..+...+...|..++.++..++..+.+. ++.+...+.
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~ 111 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFM 111 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHH
Confidence 556677888999999998872 22 3577889999999999999988877663 333333332
Q ss_pred CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010291 98 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158 (513)
Q Consensus 98 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 158 (513)
......-..+..++..+..++++....+.+. .+..++.++....... .-+..|..++.
T Consensus 112 ~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll~~~gr~~--~~L~~L~~lc~ 169 (207)
T PF01365_consen 112 QLQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELLRKHGRQP--RYLDFLSSLCV 169 (207)
T ss_dssp CCCH-TTHHHHHHHHHHHTT-----------------------------------------
T ss_pred HhhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHHHHcCCCh--HHHHHHhhhcc
Confidence 2221122345667788877777766665554 4888888887733222 23455555554
No 327
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=65.21 E-value=41 Score=32.33 Aligned_cols=110 Identities=20% Similarity=0.219 Sum_probs=63.3
Q ss_pred CHHHHHHhhcCC-------CHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhc----------CCChHHHHHHH
Q 010291 46 ALPTLILMLRSE-------DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS----------SCCSESQREAA 108 (513)
Q Consensus 46 ~i~~Lv~lL~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~----------~~~~~~~~~a~ 108 (513)
.+|.+++.+... +-......++.+..|..+ +...-...-...++.++.++- .+++.+|..|+
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N-~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA 289 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDN-PNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAA 289 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcC-CCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHH
Confidence 356666665421 455566666777777654 444333333346777776662 23468999999
Q ss_pred HHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCC--HHHHHHHHHHHHHHh
Q 010291 109 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD--VQLREMSAFALGRLA 157 (513)
Q Consensus 109 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~--~~~~~~a~~~L~~l~ 157 (513)
..|..++........ -+...++..+.+.+.++. .....-|+..|..+.
T Consensus 290 ~ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 290 RLLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred HHHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 999999854332211 123345556776666542 233566666666553
No 328
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=64.71 E-value=88 Score=27.00 Aligned_cols=108 Identities=15% Similarity=0.133 Sum_probs=66.5
Q ss_pred ChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc--CCCHH--H---HHHHHHHHHHhhcCC
Q 010291 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSA--I---HYEAVGVIGNLVHSS 76 (513)
Q Consensus 4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~--v---~~~a~~~L~~l~~~~ 76 (513)
++|.++.+..++++.++..|...+..+.+..+..-..-...| +..-.++-. .++.. . ...-...|..+..++
T Consensus 46 cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~ 124 (187)
T PF12830_consen 46 CVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSN 124 (187)
T ss_pred HHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcc
Confidence 478899999999999999999999999886655444433344 333332222 11111 1 445556666777766
Q ss_pred hhHHHHHHhCCChHHHHHhhcCC--------ChHHHHHHHHHHHHhhcC
Q 010291 77 PNIKKEVLAAGALQPVIGLLSSC--------CSESQREAALLLGQFAAT 117 (513)
Q Consensus 77 ~~~~~~~~~~g~i~~L~~ll~~~--------~~~~~~~a~~~L~~l~~~ 117 (513)
...|..+ +..|++.++.. ...-......+..||+.-
T Consensus 125 r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~~~~Fla~nLA~l 168 (187)
T PF12830_consen 125 RKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLDFLLFLAENLATL 168 (187)
T ss_pred cHhHHHH-----HHHHHHHHHhhccccccccchhHHHHHHHHHHHHhcC
Confidence 6666665 45566655542 233445566666677643
No 329
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=64.51 E-value=1.4e+02 Score=29.00 Aligned_cols=128 Identities=17% Similarity=0.116 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhc------CCChHHHHHHHHHHHHhhcCCch------------
Q 010291 59 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS------SCCSESQREAALLLGQFAATDSD------------ 120 (513)
Q Consensus 59 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~~------------ 120 (513)
..-|..|+..|..++...+.....+ ....+-.++. +.++.-+..|+..++.++.....
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i----~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v 300 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSI----LMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELV 300 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccc
Confidence 3467788899999986433221111 1122333333 24567778888888999855422
Q ss_pred hhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHH
Q 010291 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 194 (513)
Q Consensus 121 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L 194 (513)
....+....++|.|. --.+..|-++..|++.+...-..- .+..+ .+.++.++..|.+++.-+...|+.++
T Consensus 301 ~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l-~~~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 301 DVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL-PKEQL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred cHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC-CHHHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 112333444455444 112346778888888877764321 12222 35788899999999998988888764
No 330
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=64.25 E-value=17 Score=35.70 Aligned_cols=44 Identities=11% Similarity=0.294 Sum_probs=36.4
Q ss_pred CChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhCchhhHhhhh
Q 010291 443 ISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQ 489 (513)
Q Consensus 443 ~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~ 489 (513)
+..+|+..++..|.+|..+.|.+.|++||.++... ..+|..|++
T Consensus 185 ~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~---~naf~~L~q 228 (521)
T KOG2075|consen 185 LAADTVITTLYAAKKYLVPALERQCVKFLRKNLMA---DNAFLELFQ 228 (521)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC---hHHHHHHHH
Confidence 67999999999999999999999999999876533 345555554
No 331
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=62.19 E-value=54 Score=35.51 Aligned_cols=126 Identities=17% Similarity=0.227 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHH
Q 010291 59 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 137 (513)
Q Consensus 59 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~ 137 (513)
+.++..+.-+|+++|...+...+ ..+|.|++-|+-. +..+|.+.+.+++.+|.. ...+ ....+|.+...
T Consensus 945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~----YTam-~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSS----YTAM-TDRYIPMIAAS 1014 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHH----HHHH-HHHhhHHHHHH
Confidence 45788888899999876444322 3578888877654 456777777777777743 2223 34789999999
Q ss_pred hCCCCHHHHHHHHHHHHHHhhccccchhhHhcCCh--HHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291 138 LQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL--VPLLKLLDSKNGSLQHNAAFALYGLAD 199 (513)
Q Consensus 138 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i--~~L~~ll~~~~~~~~~~a~~~L~~l~~ 199 (513)
|+++++-++..+.-.|.+|....-.+. .|.+ ..++.++ +.+++++..|=..++.+-.
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~~vKw----~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFGIVKW----NGELFIRFMLALL-DANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhhhhhc----chhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHh
Confidence 999999999999999999975332221 2322 2244444 5678888877777777654
No 332
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=60.72 E-value=1.1e+02 Score=31.00 Aligned_cols=139 Identities=18% Similarity=0.147 Sum_probs=83.3
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC--------CCHHHHHHHHHHHHHhhcCChhH
Q 010291 8 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--------EDSAIHYEAVGVIGNLVHSSPNI 79 (513)
Q Consensus 8 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--------~~~~v~~~a~~~L~~l~~~~~~~ 79 (513)
+.+.+.+.++..+..|+..|..=+. .. -.+|.++..+.. .|-.+.....+..+.|..+ +.+
T Consensus 212 It~a~~g~~~~~r~eAL~sL~TDsG----L~------~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N-p~i 280 (576)
T KOG2549|consen 212 ITEACTGSDEPLRQEALQSLETDSG----LQ------QLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN-PNI 280 (576)
T ss_pred HHHHHhcCCHHHHHHHHHhhccCcc----HH------HHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC-Ccc
Confidence 4444445566666666555542221 11 124555555542 3455666677777777644 655
Q ss_pred HHHHHhCCChHHHHHhhc----------CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC--CHHHHH
Q 010291 80 KKEVLAAGALQPVIGLLS----------SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLRE 147 (513)
Q Consensus 80 ~~~~~~~g~i~~L~~ll~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~ 147 (513)
.-.-.-...++.++.++- ++++.+|..|+..+..++......... ....++..+.+.+.++ +....+
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhh
Confidence 444344456777777653 245678999999999998655443333 5556778888888765 455667
Q ss_pred HHHHHHHHHhh
Q 010291 148 MSAFALGRLAQ 158 (513)
Q Consensus 148 ~a~~~L~~l~~ 158 (513)
-++..|..|..
T Consensus 360 Gai~gL~~lg~ 370 (576)
T KOG2549|consen 360 GAIAGLSELGH 370 (576)
T ss_pred hHHHHHHHhhh
Confidence 77777776653
No 333
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=59.36 E-value=77 Score=30.79 Aligned_cols=92 Identities=16% Similarity=0.210 Sum_probs=62.9
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCchhhHH
Q 010291 47 LPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVH 124 (513)
Q Consensus 47 i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~ 124 (513)
+..+++=|+ +.+..+|..++--|..-+.+ +..+..+...|....+...+.+. +..+...++.++..+...+......
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 566776666 44567888888888888876 88899999999999999999554 3335555555555554444443444
Q ss_pred HHhcCChHHHHHHhC
Q 010291 125 IVQRGAVRPLIEMLQ 139 (513)
Q Consensus 125 ~~~~~~i~~L~~~l~ 139 (513)
+.+.+....++.++.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 445566666677776
No 334
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=58.42 E-value=93 Score=31.16 Aligned_cols=79 Identities=19% Similarity=0.150 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhhccCch-hHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHh
Q 010291 17 TKVQRAAAGALRTLAFKNDE-NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 95 (513)
Q Consensus 17 ~~~~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 95 (513)
...|..|+++|+.++..-+. ....+.. +.|+.+|.+....-|..|..++...+...........-....+.|...
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 35688899999999875322 1122211 268889998888888888888888876533211000001234556666
Q ss_pred hcCC
Q 010291 96 LSSC 99 (513)
Q Consensus 96 l~~~ 99 (513)
|..+
T Consensus 177 L~~~ 180 (441)
T PF12054_consen 177 LENP 180 (441)
T ss_pred HcCC
Confidence 6643
No 335
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=57.84 E-value=43 Score=27.04 Aligned_cols=73 Identities=11% Similarity=0.088 Sum_probs=56.0
Q ss_pred ChHHHHHhhcCCChHHHHHHHHHHHHhhcCC-chhhHHHHhcCChHHHHHHhCCC--CHHHHHHHHHHHHHHhhcc
Q 010291 88 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQDM 160 (513)
Q Consensus 88 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~~ 160 (513)
++..|..-+.+.++.++..|+..|..+...+ +.....+...+++..|..+++.. .+.++..++..+.+.+...
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4566777777888999999999888888553 44556677788999999999875 3448888998888887543
No 336
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=56.71 E-value=1.3e+02 Score=25.86 Aligned_cols=74 Identities=18% Similarity=0.130 Sum_probs=44.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCch
Q 010291 47 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120 (513)
Q Consensus 47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 120 (513)
++.+++=|...+.--+-.|......+.......+-.-+-...+..+-..|++.++++...++.+|..|+..++.
T Consensus 40 Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 40 LPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred HHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 45555555543333445555555555433111111222234677778888899999999999999999655443
No 337
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=56.57 E-value=1.3e+02 Score=29.00 Aligned_cols=109 Identities=12% Similarity=0.087 Sum_probs=63.7
Q ss_pred ChHHHHHhhcCC-------ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC----------CCHHHHHHHH
Q 010291 88 ALQPVIGLLSSC-------CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS----------PDVQLREMSA 150 (513)
Q Consensus 88 ~i~~L~~ll~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~----------~~~~~~~~a~ 150 (513)
.+|.++.++... +.......+..+..|.. ++.......-..+++.++.++-. ++-.+|+.|+
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~-N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA 289 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD-NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAA 289 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc-CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHH
Confidence 567777776532 45566667777777763 34433333333478888877732 2347899999
Q ss_pred HHHHHHhhccccchhhHhcCChHHHHHHhcCCC-H-HHHHHHHHHHHhc
Q 010291 151 FALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN-G-SLQHNAAFALYGL 197 (513)
Q Consensus 151 ~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~-~-~~~~~a~~~L~~l 197 (513)
..|..++......-.-+.......+.+.+.++. + ....-|+..|..|
T Consensus 290 ~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 290 RLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 999999965544333333344546666665443 2 2244455555444
No 338
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=56.47 E-value=26 Score=28.68 Aligned_cols=45 Identities=33% Similarity=0.324 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcC
Q 010291 62 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT 117 (513)
Q Consensus 62 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 117 (513)
+..|+..|+.+-.+ --+..|+.+|.+++.++...|+.+|.+..-.
T Consensus 80 ~~~Av~LLGtM~GG-----------YNV~~LI~~L~~~d~~lA~~Aa~aLk~TlLv 124 (154)
T PF11791_consen 80 PAEAVELLGTMLGG-----------YNVQPLIDLLKSDDEELAEEAAEALKNTLLV 124 (154)
T ss_dssp HHHHHHHHTTS-SS-----------TTHHHHHHGG--G-TTTHHHHHHHHHT--TT
T ss_pred HHHHHHHHhhccCC-----------CcHHHHHHHHcCCcHHHHHHHHHHHHhhHHH
Confidence 44555565555432 1478999999999999999999999887633
No 339
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=56.33 E-value=23 Score=40.06 Aligned_cols=148 Identities=13% Similarity=0.124 Sum_probs=88.4
Q ss_pred CCChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 010291 2 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 81 (513)
Q Consensus 2 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 81 (513)
.|++|.|-.-|.+++..+|..|...++.+.. .+..+..=........++.-+.+.+.++|..++....++-.+++...+
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~-~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFS-DKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHh-cchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhh
Confidence 3678888888999999999999999999986 333332211223455666666788899999999888887766665433
Q ss_pred HHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010291 82 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158 (513)
Q Consensus 82 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 158 (513)
... ....+-. .+.|++++.....++.... . .......+.. .+..+...+.+....||..|+..|..+-.
T Consensus 337 ~~~---~~~~l~~--~~~D~~~rir~~v~i~~~~-v-~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 337 AST---ILLALRE--RDLDEDVRVRTQVVIVACD-V-MKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred HHH---HHHHHHh--hcCChhhhheeeEEEEEee-h-hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 221 1111111 2234433322221111110 0 0111112222 56666677777888888888888877654
No 340
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=55.28 E-value=2.4e+02 Score=28.55 Aligned_cols=71 Identities=18% Similarity=0.167 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHh------hcchhhhHHHHHhhccCCC--CcceeeecCC--chHHHHhhhcCCCcchhhhHHHHHHHhh
Q 010291 244 RVLNHLLYLMRVA------EKGVQRRVALALAHLCSPD--DQRTIFIDGG--GLELLLGLLGSTNPKQQLDGAVALFKLA 313 (513)
Q Consensus 244 ~~l~~Lv~lL~~~------~~~v~~~a~~aL~~l~~~~--~~~~~l~~~~--~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 313 (513)
..+..|..+|.++ +..+...|+..+..+..+. +....+--.- .++.+...++.+++.+-.+....+.++.
T Consensus 250 ~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 250 SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 3567777777432 2334556777777765444 2222222222 6788888888888888778777777777
Q ss_pred h
Q 010291 314 N 314 (513)
Q Consensus 314 ~ 314 (513)
.
T Consensus 330 ~ 330 (464)
T PF11864_consen 330 D 330 (464)
T ss_pred h
Confidence 4
No 341
>PHA03098 kelch-like protein; Provisional
Probab=55.03 E-value=49 Score=34.17 Aligned_cols=84 Identities=12% Similarity=0.064 Sum_probs=54.8
Q ss_pred cCHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcC------------ChhhHHHHHHHHHhc---CcHHHHHHHHHHHH---
Q 010291 411 VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI------------SLENVSSMYELSEAF---HAISLRHTCILYIM--- 472 (513)
Q Consensus 411 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~------------~~~n~~~~~~~a~~~---~~~~L~~~~~~~i~--- 472 (513)
++.++..+++.+|+.|+.+.|.+.|.+++.+++ +.+....++. .+.. +-..+.+.+++|+.
T Consensus 105 l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ll~-~~~L~v~~E~~v~~av~~W~~~~~ 183 (534)
T PHA03098 105 IDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKILS-DDKLNVSSEDVVLEIIIKWLTSKK 183 (534)
T ss_pred CCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHhc-CCCcCcCCHHHHHHHHHHHHhcCh
Confidence 678999999999999999999999999988753 2222222221 1222 34467888888884
Q ss_pred ----HHHHHhhCchhhHhhhhhhHHHH
Q 010291 473 ----EHFDKLSTRPGHSNLIQRIIPEI 495 (513)
Q Consensus 473 ----~~~~~~~~~~~f~~l~~~~~~~l 495 (513)
+++.++.+.--|..++.+.+.++
T Consensus 184 ~~r~~~~~~ll~~vR~~~~~~~~l~~~ 210 (534)
T PHA03098 184 NNKYKDICLILKVLRITFLSEEGIKKL 210 (534)
T ss_pred hhhHhHHHHHHhhccccccCHHHHHHH
Confidence 24456665555555544444433
No 342
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.96 E-value=3.5e+02 Score=30.29 Aligned_cols=270 Identities=16% Similarity=0.165 Sum_probs=142.9
Q ss_pred hccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc--CChhHHHHHHhCCCh
Q 010291 12 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH--SSPNIKKEVLAAGAL 89 (513)
Q Consensus 12 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i 89 (513)
|++.+.+.+...+..+..+-..++++....-+.--++.++.-+......+|...+.+|-.-.. +.-..++.
T Consensus 476 LkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPeqEL------- 548 (2799)
T KOG1788|consen 476 LKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPEQEL------- 548 (2799)
T ss_pred HHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcHHHH-------
Confidence 466788888888888888877788888888788888888887776566666665555433221 11111121
Q ss_pred HHHHHhhcCCC-hHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC------CCHHHHHHHHHHHHHHh-hccc
Q 010291 90 QPVIGLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS------PDVQLREMSAFALGRLA-QDMH 161 (513)
Q Consensus 90 ~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~------~~~~~~~~a~~~L~~l~-~~~~ 161 (513)
-.|.-+|..+- ..++...+.....+.+.+...+..+.+-|+++.|...++. +|. ... +.... +++.
T Consensus 549 lSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdq---ysg---vsehydrnps 622 (2799)
T KOG1788|consen 549 LSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQ---YSG---VSEHYDRNPS 622 (2799)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcch---hhh---HHHHhhcCCC
Confidence 12344454432 3344444455566666777778888899999999877764 221 111 11111 1111
Q ss_pred c---chhhHhcCChHHHHHHhcCCC--HHHH------HHHHHHHHhcc-cCcchHHHHHhhcCcccccchhhhhhhhHHH
Q 010291 162 N---QAGIAHNGGLVPLLKLLDSKN--GSLQ------HNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDC 229 (513)
Q Consensus 162 ~---~~~~~~~~~i~~L~~ll~~~~--~~~~------~~a~~~L~~l~-~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~ 229 (513)
+ ++.+-...++-.--+++.+++ ..+. ...-.+|..+- .+.++...+.++.++..++.-..+..-...
T Consensus 623 s~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpflindehRSs- 701 (2799)
T KOG1788|consen 623 SPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLINDEHRSS- 701 (2799)
T ss_pred CchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeeechHHHHH-
Confidence 1 111111111111122233321 1111 11122343333 477888888888887776553321111111
Q ss_pred HHHHHHHHHH----HhhhhhHHHHHHHHHHhh--------c----chhhhHHHHHhhcc-CCCCcceeeecCCchHHHHh
Q 010291 230 VAKTLKRLEE----KIHGRVLNHLLYLMRVAE--------K----GVQRRVALALAHLC-SPDDQRTIFIDGGGLELLLG 292 (513)
Q Consensus 230 ~~~~~~~~~~----~~~~~~l~~Lv~lL~~~~--------~----~v~~~a~~aL~~l~-~~~~~~~~l~~~~~i~~L~~ 292 (513)
+...+..+-. -.+.+-+-.++..|+++- . .......++++.+. .+...+..+.+++|...|..
T Consensus 702 lLrivscLitvdpkqvhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlt 781 (2799)
T KOG1788|consen 702 LLRIVSCLITVDPKQVHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLT 781 (2799)
T ss_pred HHHHHHHHhccCcccccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHH
Confidence 1111111111 123456777888888721 1 22334445555554 24456778899999888877
Q ss_pred hhc
Q 010291 293 LLG 295 (513)
Q Consensus 293 ll~ 295 (513)
.+.
T Consensus 782 tLh 784 (2799)
T KOG1788|consen 782 TLH 784 (2799)
T ss_pred HHH
Confidence 764
No 343
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=53.01 E-value=62 Score=28.92 Aligned_cols=130 Identities=12% Similarity=0.039 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCC---------C---------HHHHHHHHHHHHhcccCcch
Q 010291 142 DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK---------N---------GSLQHNAAFALYGLADNEDN 203 (513)
Q Consensus 142 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~---------~---------~~~~~~a~~~L~~l~~~~~~ 203 (513)
+..-...+|..+..|...+++.+.+.+.+.++.+.+.|..- + ......-...|+.++.++..
T Consensus 77 ~~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~G 156 (226)
T PF14666_consen 77 NQKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNG 156 (226)
T ss_pred chHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhH
Confidence 35566778888888888877777777777777777666432 1 12333455678888888888
Q ss_pred HHHHHhhcCcccccchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhcc
Q 010291 204 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC 272 (513)
Q Consensus 204 ~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~ 272 (513)
...+.+.+....+.+..... .....+...+..+..-.++..=..|-..|.+++..+|..|..-|+.+.
T Consensus 157 l~lLe~~~if~~l~~i~~~~-~~~~l~klil~~LDY~~~~~~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 157 LKLLERWNIFTMLYHIFSLS-SRDDLLKLILSSLDYSVDGHPRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHCCHHHHHHHHHccC-chHHHHHHHHhhCCCCCccHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 77777777766654422221 112222223333333344444444555667777788888888776654
No 344
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=50.82 E-value=2.3e+02 Score=30.30 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=48.6
Q ss_pred ChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC-CHHHHHHHHHHHHHHh
Q 010291 100 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLA 157 (513)
Q Consensus 100 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~ 157 (513)
.+.-|..++..|+.+....+...-.+.+...++.|+++|..+ +..+...|+.+|..|-
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 456778889999999988888888889999999999999865 7777788888887775
No 345
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=49.79 E-value=21 Score=27.44 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHH
Q 010291 63 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 105 (513)
Q Consensus 63 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~ 105 (513)
...+..+..++.. |+.-..+++.|+++.|+.+|.+++.++..
T Consensus 64 d~~Ik~l~~La~~-P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLATA-PELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccCC-hhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 3566777888866 67788999999999999999998877653
No 346
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=49.24 E-value=57 Score=23.35 Aligned_cols=38 Identities=13% Similarity=0.264 Sum_probs=30.7
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Q 010291 437 YTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFD 476 (513)
Q Consensus 437 ~~l~~~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~ 476 (513)
+|+ .++.+..+.++..|...+...|.+.|.++++..+.
T Consensus 7 ~F~--~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~ 44 (78)
T PF01466_consen 7 EFL--DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIK 44 (78)
T ss_dssp HHT---S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHT
T ss_pred HHH--HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhc
Confidence 445 46888899999999999999999999999988765
No 347
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.10 E-value=5.5e+02 Score=30.88 Aligned_cols=245 Identities=15% Similarity=0.052 Sum_probs=108.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCchhhHHH
Q 010291 47 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHI 125 (513)
Q Consensus 47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~ 125 (513)
...++..|...++..+..+..++..++...+.. .+ -.+..+.+..-+.+. ++-.|..-..+++.+-.........-
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~f-~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA--PF-VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc--ch-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 334445555666777777777777776542221 11 112233344444443 34334333344444432211111111
Q ss_pred HhcCChHHHHHHhCCC-CHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchH
Q 010291 126 VQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV 204 (513)
Q Consensus 126 ~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 204 (513)
.....+..+..+.+++ +|.++..++.++.-+......-....-+..+..+..++.+..+. ......++...-..++..
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~-~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTS-HVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcc-hhhhhhhhccccccchhH
Confidence 1122355666666765 56999999888888875443322222223343444554432221 111111111111111111
Q ss_pred HHHHhhcCcccccchhh--hhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhhHHHHHhhccCCCCcceeee
Q 010291 205 ADFIRVGGVQKLQDGEF--IVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 282 (513)
Q Consensus 205 ~~~~~~g~i~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~ 282 (513)
..+... ..+.|-.... +.. ......+-...-++.++++.++.++..++.++-.-.+. .+-
T Consensus 1034 ~alitt-lgpeL~~N~~~d~t~---------------~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr--~~n 1095 (2067)
T KOG1822|consen 1034 DALITT-LGPELGPNGDKDSTS---------------TLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR--HVN 1095 (2067)
T ss_pred HHHHHh-cccccCCCCcccchh---------------HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch--hcc
Confidence 111110 0011110000 000 01111222233344556888899999999888543221 111
Q ss_pred cCCchHHHHhhhcCCCcchhhhHHHHHHHhh
Q 010291 283 DGGGLELLLGLLGSTNPKQQLDGAVALFKLA 313 (513)
Q Consensus 283 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 313 (513)
-.-.|+.|..++.+..--.|......+..+.
T Consensus 1096 ~~~lV~~L~~~l~s~~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1096 LDSLVLQLCSLLSSSYLILRRASFSCLRQLV 1126 (2067)
T ss_pred HHHHHHHHHHHhcchhhhhhhhHHhhhhHHh
Confidence 2234677777777665555555555555554
No 348
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=48.44 E-value=80 Score=24.53 Aligned_cols=69 Identities=9% Similarity=0.109 Sum_probs=46.1
Q ss_pred ChhHHHHhhccCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCHHHHHHh-----hc-CCCHHHHHHHHHHHHHh
Q 010291 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILM-----LR-SEDSAIHYEAVGVIGNL 72 (513)
Q Consensus 4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~l-----L~-~~~~~v~~~a~~~L~~l 72 (513)
++..|..-|+++++.++..|+..|-.+..+ ++.....+........++.. .. ..+..+|..+..++...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 345556667778999999999999998875 34566666666555555442 11 23677888887776544
No 349
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=48.28 E-value=27 Score=34.65 Aligned_cols=64 Identities=22% Similarity=0.264 Sum_probs=48.9
Q ss_pred HHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChH-HHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291 136 EMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLV-PLLKLLDSKNGSLQHNAAFALYGLAD 199 (513)
Q Consensus 136 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~-~L~~ll~~~~~~~~~~a~~~L~~l~~ 199 (513)
.+.-..++++++.+..++.+++.+.++|........+. .+++++..+.+.+-+.+..++..+..
T Consensus 335 ~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 335 SLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 33445789999999999999999988887665544333 47788888888777778888877764
No 350
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=48.03 E-value=2.4e+02 Score=26.50 Aligned_cols=122 Identities=16% Similarity=0.133 Sum_probs=82.7
Q ss_pred HHHHHhCCChHHHHHhhcC-----------------------CChHHHHHHHHHHHHhhcCCchhh--------------
Q 010291 80 KKEVLAAGALQPVIGLLSS-----------------------CCSESQREAALLLGQFAATDSDCK-------------- 122 (513)
Q Consensus 80 ~~~~~~~g~i~~L~~ll~~-----------------------~~~~~~~~a~~~L~~l~~~~~~~~-------------- 122 (513)
++.+.+.|.++.|-++++. ++..++..-++.+.++|..++...
T Consensus 2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence 3556677888888777652 122467777888888886432111
Q ss_pred -------HHHHhcCChHHHHHHhCCC--CHHHHHHHHHHHHHHhhcccc---chhhHhcCChHHHHHHhcCCC---HHHH
Q 010291 123 -------VHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQDMHN---QAGIAHNGGLVPLLKLLDSKN---GSLQ 187 (513)
Q Consensus 123 -------~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~i~~L~~ll~~~~---~~~~ 187 (513)
..-.+.|.+..+++.+... +...+-.-+.++....++... |..+.+.|.++.++..+-++. ..+.
T Consensus 82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~ 161 (303)
T PF12463_consen 82 LNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVL 161 (303)
T ss_pred ccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHH
Confidence 1112467778888777653 667788888889998877765 445677888988887765543 4577
Q ss_pred HHHHHHHHhcccCc
Q 010291 188 HNAAFALYGLADNE 201 (513)
Q Consensus 188 ~~a~~~L~~l~~~~ 201 (513)
....-.|+.|.+..
T Consensus 162 Q~~FDLLGELiK~n 175 (303)
T PF12463_consen 162 QSNFDLLGELIKFN 175 (303)
T ss_pred HHHHHHHHHHHCCC
Confidence 77788888888744
No 351
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=47.99 E-value=1.3e+02 Score=32.58 Aligned_cols=110 Identities=15% Similarity=0.174 Sum_probs=69.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHH
Q 010291 47 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 126 (513)
Q Consensus 47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 126 (513)
...+...+..++..+-...+.++.+++.-..-..+. ....++.-..-.+..-..+......+|..++..+++....+.
T Consensus 443 W~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~ 520 (727)
T PF12726_consen 443 WKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELL 520 (727)
T ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 344445555566666666666666665321100000 111222222222233345667778899999888777666555
Q ss_pred -hcCChHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010291 127 -QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158 (513)
Q Consensus 127 -~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 158 (513)
+.+....++.++-+++.++.+.|...|.....
T Consensus 521 ~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 521 SDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred cCcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 57889999999999999999999999999874
No 352
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=47.65 E-value=45 Score=29.34 Aligned_cols=95 Identities=17% Similarity=0.233 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhh
Q 010291 17 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 96 (513)
Q Consensus 17 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll 96 (513)
..+...+.+.|..++.+++.++..+.+. ++.++..+.......-..+..+|..+..++......+.+.. +..++.++
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll 151 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHH
Confidence 3577888999999999999999988775 44333333322222223567788888888888777766554 88888888
Q ss_pred cCCChHHHHHHHHHHHHhhc
Q 010291 97 SSCCSESQREAALLLGQFAA 116 (513)
Q Consensus 97 ~~~~~~~~~~a~~~L~~l~~ 116 (513)
.....+. .-...|..++.
T Consensus 152 ~~~gr~~--~~L~~L~~lc~ 169 (207)
T PF01365_consen 152 RKHGRQP--RYLDFLSSLCV 169 (207)
T ss_dssp --------------------
T ss_pred HHcCCCh--HHHHHHhhhcc
Confidence 7633222 23345555553
No 353
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=47.38 E-value=1e+02 Score=25.21 Aligned_cols=70 Identities=10% Similarity=0.100 Sum_probs=50.7
Q ss_pred hhHHHHhhcc-CCHHHHHHHHHHHHHhhccC-chhHHHHHhcCCHHH-HHHhhcC---CCHHHHHHHHHHHHHhhc
Q 010291 5 IPPLVELLEF-TDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPT-LILMLRS---EDSAIHYEAVGVIGNLVH 74 (513)
Q Consensus 5 i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~-Lv~lL~~---~~~~v~~~a~~~L~~l~~ 74 (513)
+..|..-|++ .++.++..|+..|-.+..+. ......+...+.+.. |+.++.. .+..|+...+..+...+.
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 4455555653 58889999998888887753 456677777788887 8888862 345888888888877763
No 354
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=47.10 E-value=50 Score=26.79 Aligned_cols=50 Identities=16% Similarity=0.144 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhccC-chhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 010291 18 KVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 73 (513)
Q Consensus 18 ~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~ 73 (513)
-++...+.++..++... |.. ....++.+++++.+ ++.-....+.+|..+.
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~-----Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~ 53 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQ-----WPDFLEDLLQLLQS-SPQHLELVLRILRILP 53 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT-----STTHHHHHHHHHHT-THHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhh-----CchHHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence 45667777777777632 111 22456777777775 4666666777776665
No 355
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=46.46 E-value=3.3e+02 Score=27.57 Aligned_cols=90 Identities=17% Similarity=0.179 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCC------CCHHHHHHHHHHHHHHhhcccc--chhhHhcC--C
Q 010291 102 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS------PDVQLREMSAFALGRLAQDMHN--QAGIAHNG--G 171 (513)
Q Consensus 102 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~------~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~--~ 171 (513)
++...+-.++.||+...-.. ..+..|..+|.+ ++..+..-|+..+..+..+... ...+--.- .
T Consensus 230 ~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~v 302 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSV 302 (464)
T ss_pred ccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHH
Confidence 55566666888887433221 246678888832 2456677888888888765522 22222222 5
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 010291 172 LVPLLKLLDSKNGSLQHNAAFALYGLA 198 (513)
Q Consensus 172 i~~L~~ll~~~~~~~~~~a~~~L~~l~ 198 (513)
++.+...++.+++.+-...+..+.++-
T Consensus 303 l~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 303 LPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 666778888777666666666666555
No 356
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=46.05 E-value=1.5e+02 Score=23.52 Aligned_cols=70 Identities=13% Similarity=0.202 Sum_probs=44.7
Q ss_pred ChHHHHHhhcCCChHHHHHHHHHHHHhhcCCc-hhhHHHHh-cCChHHHHHHhCCCC--------HHHHHHHHHHHHHHh
Q 010291 88 ALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQ-RGAVRPLIEMLQSPD--------VQLREMSAFALGRLA 157 (513)
Q Consensus 88 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~-~~~i~~L~~~l~~~~--------~~~~~~a~~~L~~l~ 157 (513)
++..|..-|++.++.|+..++.+|-.++...+ ..+..+.. ...|..+.+.-..+| ..||..|-.++..+.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 46778888888889999999999999996554 33433332 334444444443222 356666666665554
No 357
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=45.45 E-value=65 Score=30.82 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhhccccchhhHhcC--ChHHHHHHhcCCC---HHHHHHHHHHHHhcccCcchHHHHHh
Q 010291 145 LREMSAFALGRLAQDMHNQAGIAHNG--GLVPLLKLLDSKN---GSLQHNAAFALYGLADNEDNVADFIR 209 (513)
Q Consensus 145 ~~~~a~~~L~~l~~~~~~~~~~~~~~--~i~~L~~ll~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~ 209 (513)
++..|..++..+.........+...+ .+..|++++..++ ..++..|+.+|..++.+......++.
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~ 307 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLR 307 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 44455555555554445556666655 7888999998664 67899999999999987666555543
No 358
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=45.26 E-value=1.6e+02 Score=23.95 Aligned_cols=70 Identities=21% Similarity=0.306 Sum_probs=52.7
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-hhHHHHHHhCCChHHHHHhhcCCC-hH---HHHHHHHHHHHhh
Q 010291 46 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLSSCC-SE---SQREAALLLGQFA 115 (513)
Q Consensus 46 ~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~---~~~~a~~~L~~l~ 115 (513)
++..|..-|+++++.++..|+.+|-.+..+. +..+..+.....+..|..++.+.. .. |+..+...+..-.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 4667788888999999999999999998876 345566666667888888776533 33 7888877776665
No 359
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.90 E-value=1.3e+02 Score=29.22 Aligned_cols=113 Identities=13% Similarity=0.153 Sum_probs=72.4
Q ss_pred hHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHh
Q 010291 6 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 85 (513)
Q Consensus 6 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 85 (513)
..|+..+++-+..+|..|+..|..+...++.... .-...+++.+..+.-+.+..+|.....++-.+.......+.....
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 4566677888999999999999998875443222 122335666777777888889998888887765432222111111
Q ss_pred CCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCc
Q 010291 86 AGALQPVIGLLSSCCSESQREAALLLGQFAATDS 119 (513)
Q Consensus 86 ~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 119 (513)
.-..+.+...+.+..++++..+...|.-+....+
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 1123344444556678888888888888775443
No 360
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.27 E-value=66 Score=36.60 Aligned_cols=147 Identities=15% Similarity=0.104 Sum_probs=77.2
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH
Q 010291 45 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124 (513)
Q Consensus 45 g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 124 (513)
|++|.|-.-|.+++..+|..|+..++.+..+....- .--........+.-+.+.+.++|..++....+....++.....
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l-~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQL-SETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhh-cccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence 678888888888999999999999999987633221 1001124445555556677788877777666655444432221
Q ss_pred HHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291 125 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 199 (513)
Q Consensus 125 ~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 199 (513)
. +.+..+- ..+.|+.++....-++.. +........+... .+..+.+.+.+....|+..|+.-|..+-.
T Consensus 338 ~---~~~~~l~--~~~~D~~~rir~~v~i~~-~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 338 S---TILLALR--ERDLDEDVRVRTQVVIVA-CDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred H---HHHHHHH--hhcCChhhhheeeEEEEE-eehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 1 1112222 123343333221111111 1100111111122 34445556667777888888777766543
No 361
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=43.04 E-value=26 Score=33.57 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=30.5
Q ss_pred cCHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcC
Q 010291 411 VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI 443 (513)
Q Consensus 411 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~ 443 (513)
+++.++...+++|.+|+++++++.|.++|..++
T Consensus 170 lspkta~~yYea~ckYgle~vk~kc~ewl~~nl 202 (488)
T KOG4682|consen 170 LSPKTACGYYEAACKYGLESVKKKCLEWLLNNL 202 (488)
T ss_pred cChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 788999999999999999999999999997753
No 362
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=42.84 E-value=1.1e+02 Score=33.50 Aligned_cols=103 Identities=12% Similarity=0.133 Sum_probs=65.9
Q ss_pred CHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH
Q 010291 46 ALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124 (513)
Q Consensus 46 ~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 124 (513)
++..+++-++ ++...++..|+..+...-.+.+. ....+. ++..|-.+.++....++..++..|..+...+|...
T Consensus 577 V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~--~~~fe~-~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~-- 651 (1529)
T KOG0413|consen 577 VVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDE--ASKFEV-VLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLF-- 651 (1529)
T ss_pred HHHHHHHHhccCCCcccchhhHHHHHHHHhccch--hhcchh-HHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhh--
Confidence 4556666666 45566788888877766655332 122222 25556666677788899999999999886666433
Q ss_pred HHhcCChHHHHHHhCCCCHHHHHHHHHHH
Q 010291 125 IVQRGAVRPLIEMLQSPDVQLREMSAFAL 153 (513)
Q Consensus 125 ~~~~~~i~~L~~~l~~~~~~~~~~a~~~L 153 (513)
-++..++..|+.++.+.+..+.+.|...|
T Consensus 652 ~~~~~wl~~li~~~~d~es~v~e~a~~~i 680 (1529)
T KOG0413|consen 652 SLSSKWLHTLISMLNDTESDVTEHARKLI 680 (1529)
T ss_pred hhhHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 23445667777777776666666655533
No 363
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=42.84 E-value=1.2e+02 Score=30.91 Aligned_cols=171 Identities=17% Similarity=0.143 Sum_probs=93.7
Q ss_pred CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc--C---------CCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291 15 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--S---------EDSAIHYEAVGVIGNLVHSSPNIKKEV 83 (513)
Q Consensus 15 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~--~---------~~~~v~~~a~~~L~~l~~~~~~~~~~~ 83 (513)
++.++...|-..|..+... +-+..+|..|..+.. . .++.+|...+..|..-... .-
T Consensus 249 ~~~~V~~~ae~~LKr~~~~-------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A------a~ 315 (501)
T PF13001_consen 249 SNSSVSDRAEDLLKRLSVS-------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA------AT 315 (501)
T ss_pred CcchHHHHHHHHHhhcCCC-------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH------Hh
Confidence 4556666677777766652 223345556665544 1 3456777655555443110 00
Q ss_pred HhCCChHHHHHhhcCC--ChHHHHHHHHHH---HHhhcCCchhhHHHHhcCChHHHHHHhC--------CCCHHHHHHHH
Q 010291 84 LAAGALQPVIGLLSSC--CSESQREAALLL---GQFAATDSDCKVHIVQRGAVRPLIEMLQ--------SPDVQLREMSA 150 (513)
Q Consensus 84 ~~~g~i~~L~~ll~~~--~~~~~~~a~~~L---~~l~~~~~~~~~~~~~~~~i~~L~~~l~--------~~~~~~~~~a~ 150 (513)
.....+..+..-+.+. +..++..+...+ .......+......+...+...+.+.+. ..+...+..+-
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aY 395 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAY 395 (501)
T ss_pred CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHH
Confidence 1112333344444454 456666666666 4444443433333332233333333442 24778999999
Q ss_pred HHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291 151 FALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 199 (513)
Q Consensus 151 ~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 199 (513)
.+|+.|+...+.-- .-+.+.+..|+.-|..++++++..+-.+|..++.
T Consensus 396 e~lG~L~~~~p~l~-~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 396 ETLGLLAKRAPSLF-SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHccCcccc-cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 99999996554321 1123456667777777788888777777777764
No 364
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=42.42 E-value=2.7e+02 Score=25.38 Aligned_cols=94 Identities=18% Similarity=0.316 Sum_probs=55.9
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH--HHHhCCChHHHHHhhcCCC--hHHHHHHHHHHHHhhcCC
Q 010291 43 ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK--EVLAAGALQPVIGLLSSCC--SESQREAALLLGQFAATD 118 (513)
Q Consensus 43 ~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~ 118 (513)
+....++++++++.++..+-. .++-... +..-. ..+..|-++.|..++.+++ .-+|..|..+|..++...
T Consensus 71 e~~A~~~li~l~~~~~~~~~~----l~GD~~t--E~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~ 144 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLED----LFGDFIT--EDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEG 144 (249)
T ss_pred hhhhHHHHHHHHcCCcchHHH----HHcchhH--hHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcC
Confidence 456789999999854431111 1111110 11111 1122466788888888764 567889999999999888
Q ss_pred chhhHHHHhcCChHHHHHH-hCCCCHH
Q 010291 119 SDCKVHIVQRGAVRPLIEM-LQSPDVQ 144 (513)
Q Consensus 119 ~~~~~~~~~~~~i~~L~~~-l~~~~~~ 144 (513)
+..|..+++ .+..++.. +...+..
T Consensus 145 ~~~Re~vi~--~f~~ll~~~l~~~~~~ 169 (249)
T PF06685_consen 145 PISREEVIQ--YFRELLNYFLERNPSF 169 (249)
T ss_pred CCCHHHHHH--HHHHHHHHHhccCchH
Confidence 888887765 44445444 4444444
No 365
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=40.57 E-value=3.2e+02 Score=29.17 Aligned_cols=113 Identities=21% Similarity=0.232 Sum_probs=75.8
Q ss_pred CChhHHHHhhccCCHHHHHHHHHHHHHhhccCc--hhHHHHHh----cCCH--------------HHHHHhhcC--CCHH
Q 010291 3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKND--ENKNQIVE----CNAL--------------PTLILMLRS--EDSA 60 (513)
Q Consensus 3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~--~~~~~i~~----~g~i--------------~~Lv~lL~~--~~~~ 60 (513)
.-|..|+.+|.+++..+...+-..+........ .....+++ .|-. +.++..|.. ..+.
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s~~~~~il~~~~~P~~K~~~~~l~~~~~~~~ 83 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNSQRALEILVGVQEPHDKHLFDKLNDYFVKPS 83 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCcHHHHHHHHhcCCccHHHHHHHHHHHHcCch
Confidence 457788999999888777777776665554221 12222222 1211 223333331 3457
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCC-ChHHHHHHHHHHHHhh
Q 010291 61 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFA 115 (513)
Q Consensus 61 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~ 115 (513)
-|..++..|+.+....+...-.+.+...++.|+.+|..+ +..+...|+.+|..|.
T Consensus 84 ~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 84 YRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred hHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 789999999999988788878888989999999988754 5666677777777776
No 366
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=40.47 E-value=1.9e+02 Score=23.00 Aligned_cols=85 Identities=14% Similarity=0.195 Sum_probs=50.3
Q ss_pred HHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-hHHHHHHhC-CChHHHHHhhcCCC---
Q 010291 26 ALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-NIKKEVLAA-GALQPVIGLLSSCC--- 100 (513)
Q Consensus 26 ~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~-g~i~~L~~ll~~~~--- 100 (513)
-|.+++..++..... ++..|..-|++.++.|+..++.+|-.++.... ..+..+.+. ..|..+.++-...+
T Consensus 24 Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~ 98 (122)
T cd03572 24 EIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLK 98 (122)
T ss_pred HHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCccc
Confidence 445555543333332 46788888888889999999999999987443 444444332 34444444433222
Q ss_pred -----hHHHHHHHHHHHHhh
Q 010291 101 -----SESQREAALLLGQFA 115 (513)
Q Consensus 101 -----~~~~~~a~~~L~~l~ 115 (513)
..||..|-.++.-+.
T Consensus 99 Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 99 GDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred CcchhHHHHHHHHHHHHHHh
Confidence 256666665555554
No 367
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=40.42 E-value=2.9e+02 Score=25.18 Aligned_cols=117 Identities=21% Similarity=0.224 Sum_probs=64.5
Q ss_pred hCCChHHHHHhhcCCChHH--------HHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC--CHHHHHHHHHHHH
Q 010291 85 AAGALQPVIGLLSSCCSES--------QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALG 154 (513)
Q Consensus 85 ~~g~i~~L~~ll~~~~~~~--------~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~ 154 (513)
+..+.+.++++++.++..+ -+....++..+ -.|-++.|..++.++ +.-++..|+.+|.
T Consensus 71 e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv------------~~G~~~~L~~li~~~~~~~yvR~aa~~aL~ 138 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV------------GDGDIEPLKELIEDPDADEYVRMAAISALA 138 (249)
T ss_pred hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH------------hCCCHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 3457899999997655421 12222233333 346677888888887 6679999999999
Q ss_pred HHhhcccc-chhhHhcCChHHHHHH-hcCCCHHHHHHHHHHHHhccc--CcchHHHHHhhcCccc
Q 010291 155 RLAQDMHN-QAGIAHNGGLVPLLKL-LDSKNGSLQHNAAFALYGLAD--NEDNVADFIRVGGVQK 215 (513)
Q Consensus 155 ~l~~~~~~-~~~~~~~~~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~i~~ 215 (513)
.++...+. |..+++ .+..++.. +...+..+...-+..+..|.. --...++..+.|.|+.
T Consensus 139 ~l~~~~~~~Re~vi~--~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~ 201 (249)
T PF06685_consen 139 FLVHEGPISREEVIQ--YFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDP 201 (249)
T ss_pred HHHHcCCCCHHHHHH--HHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence 99966554 554442 23333333 333323333333334444432 1123334445565554
No 368
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=40.40 E-value=36 Score=18.81 Aligned_cols=27 Identities=44% Similarity=0.454 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc
Q 010291 18 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 55 (513)
Q Consensus 18 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~ 55 (513)
.+|..|+.+|+++.. ++ .++.|++.|+
T Consensus 2 ~vR~~aa~aLg~~~~--~~---------a~~~L~~~l~ 28 (30)
T smart00567 2 LVRHEAAFALGQLGD--EE---------AVPALIKALE 28 (30)
T ss_pred HHHHHHHHHHHHcCC--Hh---------HHHHHHHHhc
Confidence 578899999999853 22 4566666654
No 369
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=40.15 E-value=3.9e+02 Score=28.96 Aligned_cols=106 Identities=14% Similarity=0.086 Sum_probs=61.7
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc--chhhHhc
Q 010291 92 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN--QAGIAHN 169 (513)
Q Consensus 92 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~ 169 (513)
+...+..++..+......++.+++.-..-.... ...-++.-....+..-..+......+|..++.-++. +..+.+.
T Consensus 446 l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~d~ 523 (727)
T PF12726_consen 446 LLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLSDP 523 (727)
T ss_pred HHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcCc
Confidence 333344455555555666666655221110000 111122222222222234667778888888865443 3334456
Q ss_pred CChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291 170 GGLVPLLKLLDSKNGSLQHNAAFALYGLAD 199 (513)
Q Consensus 170 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 199 (513)
+....++.++-++++++...|...|.....
T Consensus 524 ~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 524 DAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred chhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 788889999999999999999999998775
No 370
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=39.91 E-value=90 Score=23.06 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=35.1
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHhcC------------ChhhHHHHHHHHHhc--CcHHHHHHHHHHHHHH
Q 010291 418 DLLRAADQYLLEGLKRLCEYTIAQDI------------SLENVSSMYELSEAF--HAISLRHTCILYIMEH 474 (513)
Q Consensus 418 ~ll~~A~~~~~~~l~~~c~~~l~~~~------------~~~n~~~~~~~a~~~--~~~~L~~~~~~~i~~~ 474 (513)
+++.+|+.|+.+.|.+.|..++.+++ +.+....++.--+.. +-..+.+.+.+|+..+
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~ 73 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHD 73 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCC
Confidence 56778999999999999999877642 233333332221111 2345667777777654
No 371
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=39.84 E-value=59 Score=25.43 Aligned_cols=38 Identities=8% Similarity=0.157 Sum_probs=31.0
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291 46 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 84 (513)
Q Consensus 46 ~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 84 (513)
+|+.|+.-|.+++++|...|+.+|...+.+. ...+.++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH
Confidence 5788999999999999999999999999875 4434433
No 372
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=39.69 E-value=1.3e+02 Score=28.71 Aligned_cols=62 Identities=15% Similarity=0.250 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHhcC--CHHHHHHhhcCC---CHHHHHHHHHHHHHhhcCChhHHH
Q 010291 19 VQRAAAGALRTLAFKNDENKNQIVECN--ALPTLILMLRSE---DSAIHYEAVGVIGNLVHSSPNIKK 81 (513)
Q Consensus 19 ~~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~Lv~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~ 81 (513)
+|..|+..+..+.. ++.....+...+ .+..|++++..+ ...+|..|+.+|..++.+.....+
T Consensus 238 iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 238 IRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHH
Confidence 44445555544443 566677777766 899999999843 468999999999999987555443
No 373
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=39.27 E-value=56 Score=30.63 Aligned_cols=51 Identities=29% Similarity=0.353 Sum_probs=38.4
Q ss_pred hhHHHHhhccCCHHHHHHHHHHHHHhhccCc--------------hhHHHHHhcCCHHHHHHhhc
Q 010291 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKND--------------ENKNQIVECNALPTLILMLR 55 (513)
Q Consensus 5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~--------------~~~~~i~~~g~i~~Lv~lL~ 55 (513)
+..+++-|.+++...|..|+++|..++.|.- .|...+.+.|+++.+..+|+
T Consensus 62 i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 62 IEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 5667788888899999999999999998632 22234556677777777776
No 374
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=39.11 E-value=1.2e+02 Score=23.69 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=31.5
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHhcccCcchHHHHHh
Q 010291 171 GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR 209 (513)
Q Consensus 171 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 209 (513)
+++.|+.-|.++++++...|+.+|...|.++.....++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 467788999999999999999999999987755554443
No 375
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=39.11 E-value=4.1e+02 Score=28.47 Aligned_cols=74 Identities=12% Similarity=0.137 Sum_probs=58.5
Q ss_pred ChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhh
Q 010291 88 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI 166 (513)
Q Consensus 88 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 166 (513)
.|+.|..+..+.-.+++..++.++.++....|+.... ++..++.-|.++...+...|...|.+|....++-+.+
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 5666666666677899999999999998787776543 4567899999998899999999999998777775443
No 376
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=39.01 E-value=57 Score=26.78 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhcchhhhHHHHHhhc
Q 010291 246 LNHLLYLMRVAEKGVQRRVALALAHL 271 (513)
Q Consensus 246 l~~Lv~lL~~~~~~v~~~a~~aL~~l 271 (513)
+..|+.+|.+.+..+...|+.+|.+-
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT-
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 45556666666666666666666543
No 377
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=38.73 E-value=4.8e+02 Score=29.28 Aligned_cols=92 Identities=10% Similarity=0.027 Sum_probs=63.7
Q ss_pred CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhH--hcCChHHH
Q 010291 98 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIA--HNGGLVPL 175 (513)
Q Consensus 98 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~i~~L 175 (513)
+-++++|..++..|+--+..-| ..+.+...+.-+-..|.+.+..||..++.+|..|....+....+. -+..=..+
T Consensus 298 DV~~~IRaiCiqeLgiWi~~yP---~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RI 374 (1048)
T KOG2011|consen 298 DVDPDIRAICIQELGIWIKSYP---EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRI 374 (1048)
T ss_pred cCchHHHHHHHHHHHHHHHhcc---HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 4568899888887777664433 356676778888888999999999999999999998765554432 23444457
Q ss_pred HHHh-cCCCHHHHHHHHH
Q 010291 176 LKLL-DSKNGSLQHNAAF 192 (513)
Q Consensus 176 ~~ll-~~~~~~~~~~a~~ 192 (513)
+++. .+.+..++...+.
T Consensus 375 VeMadrd~~~~Vrav~L~ 392 (1048)
T KOG2011|consen 375 VEMADRDRNVSVRAVGLV 392 (1048)
T ss_pred HHHHhhhcchhHHHHHHH
Confidence 7776 3334555544444
No 378
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=38.68 E-value=3.8e+02 Score=26.12 Aligned_cols=135 Identities=11% Similarity=0.058 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHHHhhccCchhHHHHHhcC---CHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChH
Q 010291 16 DTKVQRAAAGALRTLAFKNDENKNQIVECN---ALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 90 (513)
Q Consensus 16 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g---~i~~Lv~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 90 (513)
+.++-.+|+++|+.+.. +++....+-+.- ++...+..+.+ .+..+....+++|..--.. ..++....+.
T Consensus 59 ~~~L~~qALkll~~~l~-~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~-----~~~~~~~~~~ 132 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLY-HPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS-----PKIMTSDRVE 132 (372)
T ss_pred chHHHHHHHHHHHHHHc-cHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-----CcccchhhHH
Confidence 55778899999999887 566655554432 34555556543 3566666666666543222 2233344455
Q ss_pred HHHHhhcC-----CChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010291 91 PVIGLLSS-----CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 157 (513)
Q Consensus 91 ~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 157 (513)
.++..+.. +...+......++.++....|..-.. .....++.++..+-+....++..|...+..+.
T Consensus 133 ~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~-~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 133 RLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIK-HADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 55554432 44577888899999998655543211 12337788888887777778877766666654
No 379
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=37.75 E-value=26 Score=33.51 Aligned_cols=57 Identities=12% Similarity=0.206 Sum_probs=41.9
Q ss_pred ceecCCCCHHHHHHHHHHHhcCcc-c------------cCHHHHHHHHHHHHHhcHHHHHHHHHHHHHhc
Q 010291 386 DIEIPNIRWEVFELMMRFIYTGSV-D------------VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQD 442 (513)
Q Consensus 386 ~i~l~~~~~~~~~~~l~~~Y~~~~-~------------~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 442 (513)
.+.+.+++.+.+-.+|.....-.. + +..+++..++.+|.+|+++.|...|..|+.++
T Consensus 107 ~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrn 176 (620)
T KOG4350|consen 107 KIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRN 176 (620)
T ss_pred ceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcC
Confidence 577777777766666654443222 1 34567888999999999999999999999764
No 380
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=37.70 E-value=26 Score=34.72 Aligned_cols=70 Identities=23% Similarity=0.312 Sum_probs=47.9
Q ss_pred hHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010291 89 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158 (513)
Q Consensus 89 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 158 (513)
...+-.+....++++++.+..++.+++.+...-+..+-....-..++..+..+.+++-+.+..++..+..
T Consensus 330 ~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 330 LKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 3344445556889999999999999986644433233334455667778877777777777777776654
No 381
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=37.63 E-value=66 Score=26.07 Aligned_cols=49 Identities=27% Similarity=0.304 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHH
Q 010291 101 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 153 (513)
Q Consensus 101 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L 153 (513)
.++...+..++......-+ ...+.+.+.++.+.+++..++ ++..|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 5667777777777764222 334555667788888885443 466666654
No 382
>PHA02713 hypothetical protein; Provisional
Probab=37.52 E-value=53 Score=34.09 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=31.2
Q ss_pred cCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Q 010291 442 DISLENVSSMYELSEAFHAISLRHTCILYIMEHF 475 (513)
Q Consensus 442 ~~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~ 475 (513)
.++.+|+.+++..|..+..+.|.+.|.+|+.+++
T Consensus 90 ~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l 123 (557)
T PHA02713 90 HISSMNVIDVLKCADYLLIDDLVTDCESYIKDYT 123 (557)
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhC
Confidence 4789999999999999999999999999998653
No 383
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=36.80 E-value=3.4e+02 Score=26.01 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=35.2
Q ss_pred HHHHhhc-cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 010291 7 PLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 74 (513)
Q Consensus 7 ~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~ 74 (513)
.+..++. ..++......+.++..-...- ..-....+++.+..-+++..+.+|+.-+..++....
T Consensus 26 ~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 26 GLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 3444443 345555656666555444311 011122345555666666666688888888888775
No 384
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=36.66 E-value=39 Score=20.80 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=26.8
Q ss_pred HHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHH
Q 010291 110 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 153 (513)
Q Consensus 110 ~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L 153 (513)
+|..+...++.. +....+.+.+...+.++++.+|+.|..+|
T Consensus 2 ~l~~iv~~dp~l---l~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTL---LDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccc---cchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 345555444432 22334667788889999999999988653
No 385
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=36.46 E-value=5.4e+02 Score=27.17 Aligned_cols=74 Identities=19% Similarity=0.234 Sum_probs=48.4
Q ss_pred CChhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHh--------cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 010291 3 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--------CNALPTLILMLRSEDSAIHYEAVGVIGNLVH 74 (513)
Q Consensus 3 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--------~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~ 74 (513)
|-++.+|+.++.++++++..|+..+....+.+...-..+.+ .+.+..+..-+ .+++.++..+.+|+-|+.
T Consensus 48 ~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~--~~~n~Kk~laDIlSvLam 125 (878)
T KOG2005|consen 48 GDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESM--ADSNLKKWLADILSVLAM 125 (878)
T ss_pred hhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhc--cCchhHhHHHHHHHHHhe
Confidence 45678999999999999999999999887643322111111 12222222222 356778888888888886
Q ss_pred CChh
Q 010291 75 SSPN 78 (513)
Q Consensus 75 ~~~~ 78 (513)
...+
T Consensus 126 t~se 129 (878)
T KOG2005|consen 126 TMSE 129 (878)
T ss_pred eecc
Confidence 5444
No 386
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=36.04 E-value=2.4e+02 Score=23.00 Aligned_cols=70 Identities=19% Similarity=0.188 Sum_probs=53.2
Q ss_pred ChHHHHHHhCC-CCHHHHHHHHHHHHHHhhcccc--chhhHhcCChHH-HHHHhcC---CCHHHHHHHHHHHHhccc
Q 010291 130 AVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVP-LLKLLDS---KNGSLQHNAAFALYGLAD 199 (513)
Q Consensus 130 ~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~-L~~ll~~---~~~~~~~~a~~~L~~l~~ 199 (513)
++..|.+.+.. .++.++..|+..|-.+..+... ...+...+.++. |++++.. .+..++..++..+...+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 56678888874 5889999999999998876643 566777888887 8999863 235788888888876653
No 387
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.86 E-value=1e+02 Score=33.59 Aligned_cols=93 Identities=16% Similarity=0.075 Sum_probs=61.4
Q ss_pred hhHHHHhhccCCHHHHHHHHHHHHHhhcc--CchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 010291 5 IPPLVELLEFTDTKVQRAAAGALRTLAFK--NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 82 (513)
Q Consensus 5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 82 (513)
+..-..+|.+++..+|..|+.++....-- ..++.-.-.-...++.++..+...++-+...|+.++.+++..+.+.-..
T Consensus 805 l~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~s 884 (1014)
T KOG4524|consen 805 LGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVAS 884 (1014)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34556778889999999999988754310 1122222122346899999999999999999999999998765543222
Q ss_pred HHhCCChHHHHHhhc
Q 010291 83 VLAAGALQPVIGLLS 97 (513)
Q Consensus 83 ~~~~g~i~~L~~ll~ 97 (513)
=.-..++|.+-.++.
T Consensus 885 R~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 885 RFLEDVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHHHHHHHHH
Confidence 222345555554443
No 388
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=35.03 E-value=2.7e+02 Score=23.36 Aligned_cols=82 Identities=17% Similarity=0.150 Sum_probs=54.3
Q ss_pred HHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhH-hcC-ChHHHHH-HhcCCC--HHHHHHHHHHHHhcc
Q 010291 124 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIA-HNG-GLVPLLK-LLDSKN--GSLQHNAAFALYGLA 198 (513)
Q Consensus 124 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~-~i~~L~~-ll~~~~--~~~~~~a~~~L~~l~ 198 (513)
.++.....+.+++.+.++++.+-..+++++..+.... +..+. +.+ .+..+.. ++.+++ ...+..++.++..++
T Consensus 68 ~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~--~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 68 NLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRF--RSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 3455667778888887777888899999999988432 22222 112 2333443 565544 456778999999999
Q ss_pred cCcchHHHH
Q 010291 199 DNEDNVADF 207 (513)
Q Consensus 199 ~~~~~~~~~ 207 (513)
.++.....+
T Consensus 146 ~~p~~l~~l 154 (168)
T PF12783_consen 146 KDPQFLVDL 154 (168)
T ss_pred hChhHHHHH
Confidence 887654443
No 389
>PLN03205 ATR interacting protein; Provisional
Probab=34.65 E-value=1.1e+02 Score=29.52 Aligned_cols=111 Identities=14% Similarity=0.204 Sum_probs=68.2
Q ss_pred hhHHHHhhccCCHHHHHHHHHHHHHhhcc--CchhHHHHHhcCCHHHHHHhhc-----CCCHHHHHHHHHHHHHhhc--C
Q 010291 5 IPPLVELLEFTDTKVQRAAAGALRTLAFK--NDENKNQIVECNALPTLILMLR-----SEDSAIHYEAVGVIGNLVH--S 75 (513)
Q Consensus 5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~--~~~~~~~i~~~g~i~~Lv~lL~-----~~~~~v~~~a~~~L~~l~~--~ 75 (513)
+++|+.+..-++..+..++++.|..+.++ +.+.+-.....--+-.|.+++. +....++..|+.+..-+.. +
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssn 404 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMSTD 404 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhccc
Confidence 45666666777888888888877766543 1222211112222334555443 3456678788776655554 3
Q ss_pred ChhHHHHHHhCCChHHHHHhhcCC-ChHHHHHHHHHHHHhh
Q 010291 76 SPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFA 115 (513)
Q Consensus 76 ~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~ 115 (513)
....|+.+....++..+.++|+.+ ...++..+...|.-|.
T Consensus 405 a~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLL 445 (652)
T PLN03205 405 AYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLL 445 (652)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 333467777777888899998864 4678888877766664
No 390
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=34.58 E-value=5e+02 Score=32.31 Aligned_cols=156 Identities=20% Similarity=0.154 Sum_probs=82.6
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH
Q 010291 45 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 124 (513)
Q Consensus 45 g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 124 (513)
+.+..+...+.++.-.++..+...+++++..++...-..+....+..+-.+-.+....+...++.-+..+....+.....
T Consensus 565 ~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~ 644 (2341)
T KOG0891|consen 565 DLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISP 644 (2341)
T ss_pred hhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHh
Confidence 33444555555666778888888888888776633222212222222222222222333333333333332221211111
Q ss_pred HHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc-chhhHhcCChHHHHHHhcC-CCHHHHHHHHHHHHhcccCcc
Q 010291 125 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLADNED 202 (513)
Q Consensus 125 ~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~ 202 (513)
. -...+..++..+.+++..+...+..++..||..... -....+ ..+..+.+.+.. ++..-+..++.++.+++....
T Consensus 645 ~-v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~ 722 (2341)
T KOG0891|consen 645 Y-VGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESSTG 722 (2341)
T ss_pred h-cCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccc
Confidence 1 123456677777888888888899999999865542 112222 334444444443 345566778888888876543
No 391
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=34.27 E-value=6.2e+02 Score=27.24 Aligned_cols=101 Identities=23% Similarity=0.237 Sum_probs=72.8
Q ss_pred hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 84 (513)
Q Consensus 5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 84 (513)
|+.|..+-..+-+.++.+++.++..+..+.|+.-..+ +..+|+-|.+++..+-..|...|.+|....|..+..+
T Consensus 306 ievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~L-----L~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv- 379 (988)
T KOG2038|consen 306 IEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNL-----LVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV- 379 (988)
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHH-----HHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh-
Confidence 3444444455668999999999999988777754443 6678899999999999999999999988878765443
Q ss_pred hCCChHHHHHhhcCCC--hHHHHHHHHHHHHhh
Q 010291 85 AAGALQPVIGLLSSCC--SESQREAALLLGQFA 115 (513)
Q Consensus 85 ~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l~ 115 (513)
+..+.+++-.++ ....++|+..|..+.
T Consensus 380 ----i~EIer~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 380 ----IDEIERLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred ----HHHHHHHHcccCccccceeehhhhhhhhH
Confidence 445555554443 344566777777665
No 392
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=34.03 E-value=5e+02 Score=26.08 Aligned_cols=207 Identities=18% Similarity=0.202 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHHHhcCChH-HHHHHhCCCCHHHHHHHHHHHHHHhhccccchhhH-hcCChHHHHHHh
Q 010291 102 ESQREAALLLGQFAATDSDCKVHIVQRGAVR-PLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIA-HNGGLVPLLKLL 179 (513)
Q Consensus 102 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~i~~L~~ll 179 (513)
..|..|+.+|+.++..-+..... .... .|+..|+++...-|..++-++...+.....+..-. -....+.|..+|
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~----~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQ----EIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHH----HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 55677888998888653322111 1222 68899999988888888888888886544332111 112233466777
Q ss_pred cCCCHHHHHHHHHHHHhccc-CcchHHHHHhhcCcc-----cc---cc-------hhhhhhhhHHHHHHHHHHHHHHhhh
Q 010291 180 DSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQ-----KL---QD-------GEFIVQATKDCVAKTLKRLEEKIHG 243 (513)
Q Consensus 180 ~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~-----~L---~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (513)
..+...........+..+-. .......+...|.++ .| ++ ..++.......+....+.+......
T Consensus 178 ~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~ 257 (441)
T PF12054_consen 178 ENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSP 257 (441)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 64443222333333333221 112222333444411 11 11 1122222222222221111111100
Q ss_pred --------------hhHHHHHHHH----HHhhcchhhhHHHHHhhccCCCCcceeeecCCchHHHHhhhcC-CCcchhhh
Q 010291 244 --------------RVLNHLLYLM----RVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLD 304 (513)
Q Consensus 244 --------------~~l~~Lv~lL----~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~ 304 (513)
.-+...+... ..-+..|+..++.++..+-.-|+- + +-.|..|++-++. .+..+|..
T Consensus 258 ~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~K---L--nPiIrpLMdSIK~Een~~LQ~r 332 (441)
T PF12054_consen 258 SQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKK---L--NPIIRPLMDSIKREENELLQQR 332 (441)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC---c--cHHHHHHHHHhhccccHHHHHH
Confidence 0111111111 113344555556666665433321 1 2346666666654 78889999
Q ss_pred HHHHHHHhhhccc
Q 010291 305 GAVALFKLANKAT 317 (513)
Q Consensus 305 a~~~L~~l~~~~~ 317 (513)
++.+|..|.....
T Consensus 333 sA~slA~Li~~~~ 345 (441)
T PF12054_consen 333 SAESLARLIQLCV 345 (441)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987655
No 393
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=32.80 E-value=1.3e+02 Score=33.84 Aligned_cols=106 Identities=12% Similarity=0.155 Sum_probs=62.5
Q ss_pred hhHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH-H
Q 010291 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE-V 83 (513)
Q Consensus 5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~-~ 83 (513)
.+.+..++.+..+.++..|++++..+... ..++.+.. ++..++.++++.+.-+++.++..+..+....-. +.. -
T Consensus 818 l~~l~~~~~s~~~a~r~~~ar~i~~~~k~--~~~e~m~~--v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~-~~l~~ 892 (1549)
T KOG0392|consen 818 LPRLFFFVRSIHIAVRYAAARCIGTMFKS--ATRETMAT--VINGFLPLLGDLDKFVRRQGADELIELLDAVLM-VGLVP 892 (1549)
T ss_pred hhHHHHhcccchHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHHhhhccchhhHhhhhhHHHHHHHHHHhhc-ccccc
Confidence 35566667788899999999999998863 33333222 355666777765555555555444333211000 000 0
Q ss_pred HhCCChHHHHHhhcCCChHHHHHHHHHHHHhh
Q 010291 84 LAAGALQPVIGLLSSCCSESQREAALLLGQFA 115 (513)
Q Consensus 84 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 115 (513)
...=.+++|...+.+....+|..+..++..+.
T Consensus 893 ~~~Llv~pllr~msd~~d~vR~aat~~fa~li 924 (1549)
T KOG0392|consen 893 YNPLLVVPLLRRMSDQIDSVREAATKVFAKLI 924 (1549)
T ss_pred cceeehhhhhcccccchHHHHHHHHHHHHHHh
Confidence 00113455666667777888888888877765
No 394
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=32.65 E-value=1.6e+02 Score=30.21 Aligned_cols=98 Identities=14% Similarity=0.119 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHH---HHhhccCchhHH----HHHhcCCHHHHHHh-----hcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 010291 16 DTKVQRAAAGAL---RTLAFKNDENKN----QIVECNALPTLILM-----LRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 83 (513)
Q Consensus 16 ~~~~~~~a~~~L---~~l~~~~~~~~~----~i~~~g~i~~Lv~l-----L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 83 (513)
+...+..++..+ .....+-+.... ..+..++.+.+ +. -...+...|..+-.+|+.|+...+..- .
T Consensus 334 ~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~-~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~--~ 410 (501)
T PF13001_consen 334 NSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLI-QDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLF--S 410 (501)
T ss_pred ccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcccc-ccccccCCCcccHHHHHHHHHHHHHHHccCcccc--c
Confidence 456666666666 444433222221 12233444444 10 113467899999999999998766541 1
Q ss_pred HhCCChHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 010291 84 LAAGALQPVIGLLSSCCSESQREAALLLGQFAA 116 (513)
Q Consensus 84 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 116 (513)
-+.+.+..|..-|+++.++++...-.+|..++.
T Consensus 411 ~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 411 KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 234567778888888889999888888888873
No 395
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=32.61 E-value=4.1e+02 Score=27.00 Aligned_cols=79 Identities=16% Similarity=0.174 Sum_probs=50.9
Q ss_pred hhHHHHhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHhhcccc--------------chhhHhcCChHHHHHHhcC-CCH
Q 010291 121 CKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHN--------------QAGIAHNGGLVPLLKLLDS-KNG 184 (513)
Q Consensus 121 ~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~--------------~~~~~~~~~i~~L~~ll~~-~~~ 184 (513)
....+.+.++++.|+.+|.. .+++++.+|+..|..+..-..+ -+.+.....+..|+..+-. ...
T Consensus 54 ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~ 133 (475)
T PF04499_consen 54 ILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGG 133 (475)
T ss_pred HHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCc
Confidence 34455678999999999984 3778999999888887643322 1233444556666655442 335
Q ss_pred HHHHHHHHHHHhccc
Q 010291 185 SLQHNAAFALYGLAD 199 (513)
Q Consensus 185 ~~~~~a~~~L~~l~~ 199 (513)
....+++.++..|-+
T Consensus 134 s~lvn~v~IlieLIR 148 (475)
T PF04499_consen 134 SSLVNGVSILIELIR 148 (475)
T ss_pred chHHHHHHHHHHHHH
Confidence 555667777766664
No 396
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=32.15 E-value=24 Score=19.15 Aligned_cols=26 Identities=46% Similarity=0.538 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc
Q 010291 19 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 55 (513)
Q Consensus 19 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~ 55 (513)
+|..|+++|+.+.. + ..++.|++.|+
T Consensus 1 VR~~Aa~aLg~igd--~---------~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD--P---------RAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S--H---------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC--H---------HHHHHHHHHhc
Confidence 57788888888875 2 24666666654
No 397
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=31.32 E-value=4.9e+02 Score=25.16 Aligned_cols=123 Identities=19% Similarity=0.211 Sum_probs=69.3
Q ss_pred cccCCCCCCCCCcccchhhcccCCCcccEEEEecCeeehhhHHHHhhcCHHHHHhccCCCC----CCCCCceecCCCCHH
Q 010291 320 SSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYR----EKDARDIEIPNIRWE 395 (513)
Q Consensus 320 ~~i~~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~----e~~~~~i~l~~~~~~ 395 (513)
-++.+.|.++.+...-. ....-+++.+.|+.|...|.-|.. |=..++.+.-+ ..+..+.- -|-+|+
T Consensus 20 ~Pva~~PmP~aP~~~~~------r~De~lvlNvSGrRFeTWknTLer---yPdTLLGSsEkeFFy~~dt~eYF-FDRDPd 89 (632)
T KOG4390|consen 20 MPVAQQPMPPAPGVKAK------RQDELLVLNVSGRRFETWKNTLER---YPDTLLGSSEKEFFYDEDTGEYF-FDRDPD 89 (632)
T ss_pred eecccCCCCCCchhhhh------ccCcEEEEeccccchhHHHhHHHh---CchhhhCCcchheeecCCccccc-ccCChH
Confidence 34455555555543221 122346677889999998888873 33444433211 11122222 245899
Q ss_pred HHHHHHHHHhcCccccCHHHHHHHH-HHHHHhc-HHHHHHHHHHHHHhcCChhhHHHHH
Q 010291 396 VFELMMRFIYTGSVDVTLDIAQDLL-RAADQYL-LEGLKRLCEYTIAQDISLENVSSMY 452 (513)
Q Consensus 396 ~~~~~l~~~Y~~~~~~~~~~~~~ll-~~A~~~~-~~~l~~~c~~~l~~~~~~~n~~~~~ 452 (513)
.|+.+|.|--||++..+......-+ +--.+|+ +++|+.-|..-=-+.-.-+|+-.+.
T Consensus 90 iFRhvLnFYRTGkLHyPR~ECi~AyDeELaF~Gl~PeligDCCyEeYkDrkrENaERL~ 148 (632)
T KOG4390|consen 90 IFRHVLNFYRTGKLHYPRHECISAYDEELAFYGLVPELIGDCCYEEYKDRKRENAERLQ 148 (632)
T ss_pred HHHHHHHHhhcCcccCchHHHHHHhhhhhhHhcccHHHHhhhhhHHHhhhhhhhHHHhh
Confidence 9999999999999987755433322 2223444 6888877754332333445555444
No 398
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.32 E-value=6.6e+02 Score=26.63 Aligned_cols=140 Identities=19% Similarity=0.142 Sum_probs=76.8
Q ss_pred HHHHhh-ccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010291 7 PLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVL 84 (513)
Q Consensus 7 ~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 84 (513)
.+.+-| .+.++..|.+|=.+|..++. +++.- ..-.-+|. ...+.-+..|..+|.++..+.... ....
T Consensus 9 ~lCk~LY~s~D~~~R~~AE~~L~e~s~-specl---------skCqlll~~gs~pYs~mlAst~L~Klvs~~t~l-pl~q 77 (1082)
T KOG1410|consen 9 SLCKDLYESTDPTARHRAEKALAELSE-SPECL---------SKCQLLLERGSYPYSQMLASTCLMKLVSRKTPL-PLEQ 77 (1082)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcc-CHHHH---------HHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCC-cHHH
Confidence 344433 56788999999999999987 55532 22222333 334556667777888877653311 1111
Q ss_pred hCCChHHHHHhhcCCChHHH----HHHHHHHHHhhcC--CchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 010291 85 AAGALQPVIGLLSSCCSESQ----REAALLLGQFAAT--DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 157 (513)
Q Consensus 85 ~~g~i~~L~~ll~~~~~~~~----~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 157 (513)
..++-..+++.+....|... ...+..+..++.. ....+....-.+.+..+.+.++.++.+--..++.+|..|.
T Consensus 78 rldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLv 156 (1082)
T KOG1410|consen 78 RLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLV 156 (1082)
T ss_pred HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 12334556677766544433 3333333444311 1111222222356777888888777666666777777665
No 399
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=31.30 E-value=2e+02 Score=21.06 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=41.9
Q ss_pred HhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhc----CCChHHHHHHHHH
Q 010291 42 VECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS----SCCSESQREAALL 110 (513)
Q Consensus 42 ~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~----~~~~~~~~~a~~~ 110 (513)
.+...+.++..++. ..+.++|+..+.++.++..... .-+.. |.+.+...+. +++.++...|-.+
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~----~~i~S-GW~~if~il~~aa~~~~e~lv~~af~~ 82 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG----ENIKS-GWKVIFSILRAAAKDNDESLVRLAFQI 82 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH----HHHHh-ccHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 34456778888866 5688999999999999985432 22333 4777766664 3445555554443
No 400
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=30.95 E-value=4.6e+02 Score=29.38 Aligned_cols=133 Identities=18% Similarity=0.193 Sum_probs=86.1
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchh-hHHHHhcCChHHH
Q 010291 56 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-KVHIVQRGAVRPL 134 (513)
Q Consensus 56 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L 134 (513)
+-.+++|..++..|+--...-| ..+++...+..+=..|.+.+.+||..++.+|..|...+... ......+.+=..+
T Consensus 298 DV~~~IRaiCiqeLgiWi~~yP---~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RI 374 (1048)
T KOG2011|consen 298 DVDPDIRAICIQELGIWIKSYP---EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRI 374 (1048)
T ss_pred cCchHHHHHHHHHHHHHHHhcc---HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 4578899988888887775444 45666677888888889999999999999999998663321 1122334455556
Q ss_pred HHHh-CCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHh
Q 010291 135 IEML-QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYG 196 (513)
Q Consensus 135 ~~~l-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 196 (513)
+.+. ++-+..|+......+..+.. ..++...-+..+..++.+.++.++..|...+..
T Consensus 375 VeMadrd~~~~Vrav~L~~~~~~~~-----~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 375 VEMADRDRNVSVRAVGLVLCLLLSS-----SGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHHhhhcchhHHHHHHHHHHHHhc-----ccccChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 6666 33456666555444433321 122233345567788888888777777665553
No 401
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=30.72 E-value=1.3e+02 Score=22.08 Aligned_cols=66 Identities=17% Similarity=0.265 Sum_probs=42.3
Q ss_pred HhcCChHHHHHHhCC-CCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHh----cCCCHHHHHHHHHHHH
Q 010291 126 VQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL----DSKNGSLQHNAAFALY 195 (513)
Q Consensus 126 ~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll----~~~~~~~~~~a~~~L~ 195 (513)
.+..++.++..++.. ++.++++..+.++.++..... .-+.+| -+.++..+ .+++..+...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~---~~i~SG-W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG---ENIKSG-WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH---HHHHhc-cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 455678888888654 588999999999999986433 223334 33444333 3445666666665543
No 402
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=30.44 E-value=2.9e+02 Score=27.71 Aligned_cols=95 Identities=18% Similarity=0.168 Sum_probs=55.9
Q ss_pred cccEEEEecCeeehhhHHHHhhcCHHH--HHhccC-----------CCCCCCCCceecCCCCHHHHHHHHHHHhcCcccc
Q 010291 345 LSDVTFLVEGRRFYAHRICLLASSDAF--RAMFDG-----------GYREKDARDIEIPNIRWEVFELMMRFIYTGSVDV 411 (513)
Q Consensus 345 ~~Dv~~~~~~~~~~~h~~il~~~s~~f--~~~~~~-----------~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~ 411 (513)
..-+.+.|||.++...+..|.. .|.= ..+... ++. ...++.-.+ =+|..|..+++|.+||++..
T Consensus 30 ~~~i~lNVGG~r~~l~~~tL~~-~P~TRL~rL~~~~~~~~~l~~cDdyd-~~~~EyfFD-R~P~~F~~Vl~fYrtGkLH~ 106 (477)
T KOG3713|consen 30 DRRVRLNVGGTRHELYWSTLKR-FPLTRLGRLADCNSHEERLELCDDYD-PVTNEYFFD-RHPGAFAYVLNFYRTGKLHV 106 (477)
T ss_pred CcEEEEeeCCeeEEehHHHHhh-CchhHHHHHHhcccchhhhhhccccC-cccCeeeec-cChHHHHHHHHHHhcCeecc
Confidence 3468888999887777766664 2211 111110 011 112233332 38999999999999999987
Q ss_pred CHHH-HHHHHHHHHHhcHHH--HHHHHHHHHHhc
Q 010291 412 TLDI-AQDLLRAADQYLLEG--LKRLCEYTIAQD 442 (513)
Q Consensus 412 ~~~~-~~~ll~~A~~~~~~~--l~~~c~~~l~~~ 442 (513)
+.+- .....+--+|++++. +-.-|.....++
T Consensus 107 p~~vC~~~F~eEL~yWgI~~~~le~CC~~~~~~~ 140 (477)
T KOG3713|consen 107 PADVCPLSFEEELDYWGIDEAHLESCCWMRYRQR 140 (477)
T ss_pred ccccchHHHHHHHHHhCCChhhhhHHhHHHHhhc
Confidence 6654 334445567777765 334455555443
No 403
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=29.95 E-value=2.1e+02 Score=25.01 Aligned_cols=74 Identities=19% Similarity=0.148 Sum_probs=46.1
Q ss_pred hHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHh
Q 010291 6 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 85 (513)
Q Consensus 6 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 85 (513)
+.+.+.++++++-++..++..+...... .... .....+...+.+++..++....++|..++..+++....+++
T Consensus 123 ~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~~-----~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~ 195 (213)
T PF08713_consen 123 ELLEKWAKSDNEWVRRAAIVMLLRYIRK--EDFD-----ELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQ 195 (213)
T ss_dssp HHHHHHHHCSSHHHHHHHHHCTTTHGGG--CHHH-----HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh--cCHH-----HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 3444556777888887777666555542 1111 12333444556788999999999999999887776555544
Q ss_pred C
Q 010291 86 A 86 (513)
Q Consensus 86 ~ 86 (513)
.
T Consensus 196 ~ 196 (213)
T PF08713_consen 196 K 196 (213)
T ss_dssp H
T ss_pred H
Confidence 3
No 404
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.33 E-value=6.4e+02 Score=27.38 Aligned_cols=123 Identities=13% Similarity=0.140 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcC
Q 010291 19 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 98 (513)
Q Consensus 19 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~ 98 (513)
....|+..|...++ .+.....+...+++..+.+...-++..+|.. -+.+.+.+.+..+-+-++.
T Consensus 309 Lvs~Al~FLt~V~~-r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~e---------------DeElFED~pleYiRRDlEG 372 (960)
T KOG1992|consen 309 LVSKALQFLTSVSR-RPHYAELFEGENVLAQICEKVVLPNLILREE---------------DEELFEDNPLEYIRRDLEG 372 (960)
T ss_pred HHHHHHHHHHHHHh-hhhhHhhhcchHHHHHHHHhhcccccccchh---------------hHHHhccCHHHHHHHhccc
Confidence 33444555555554 3444444444555555544443333222221 1455666778888888888
Q ss_pred CChHHH-HHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHh-CCCC--HHHHHHHHHHHHHHhh
Q 010291 99 CCSESQ-REAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPD--VQLREMSAFALGRLAQ 158 (513)
Q Consensus 99 ~~~~~~-~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~--~~~~~~a~~~L~~l~~ 158 (513)
.|.+.| +.|+..+..|+...+.....++. +.+..++.-. +.++ =.-+..+......++.
T Consensus 373 sDvdTRRR~a~dlvrgL~~~fe~~vt~v~~-~~v~~~l~~y~~nPS~nWk~kd~aiyL~talai 435 (960)
T KOG1992|consen 373 SDVDTRRRAAIDLVRGLCKNFEGQVTGVFS-SEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAI 435 (960)
T ss_pred CCcchhHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHhccCCCccccccchhhhhhHHHHh
Confidence 887765 55777888898666544333333 2344444333 2232 1223445555555553
No 405
>PHA02790 Kelch-like protein; Provisional
Probab=28.87 E-value=45 Score=33.89 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=30.0
Q ss_pred CChhhHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q 010291 443 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 474 (513)
Q Consensus 443 ~~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~ 474 (513)
++.+|+.+++..|..+..+.+.+.|.+|+.++
T Consensus 88 it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~ 119 (480)
T PHA02790 88 IDSHNVVNLLRASILTSVEFIIYTCINFILRD 119 (480)
T ss_pred EecccHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 68999999999999999999999999999853
No 406
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=28.68 E-value=2e+02 Score=25.20 Aligned_cols=76 Identities=17% Similarity=0.172 Sum_probs=48.4
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHH
Q 010291 46 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 125 (513)
Q Consensus 46 ~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 125 (513)
..+.+...+.++++-.|..++.++...... .. .+ ..+..+...+.+++.-++....|+|..++..+++.....
T Consensus 121 ~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~-~~-~~-----~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~ 193 (213)
T PF08713_consen 121 ALELLEKWAKSDNEWVRRAAIVMLLRYIRK-ED-FD-----ELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEF 193 (213)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHCTTTHGGG-CH-HH-----HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHh-cC-HH-----HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 344455566678888888887666555544 11 11 123444555677888999999999999998887766655
Q ss_pred Hhc
Q 010291 126 VQR 128 (513)
Q Consensus 126 ~~~ 128 (513)
++.
T Consensus 194 l~~ 196 (213)
T PF08713_consen 194 LQK 196 (213)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 407
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=28.58 E-value=6.6e+02 Score=25.79 Aligned_cols=138 Identities=13% Similarity=0.085 Sum_probs=80.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcC--------CChHHHHHHHHHHHHhhcCCchh
Q 010291 50 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--------CCSESQREAALLLGQFAATDSDC 121 (513)
Q Consensus 50 Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--------~~~~~~~~a~~~L~~l~~~~~~~ 121 (513)
+.+.+-++++..+..|+..|. .+ +... -.++.++.++.. .+-++........+.|. +++..
T Consensus 212 It~a~~g~~~~~r~eAL~sL~---TD-sGL~------~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl-~Np~i 280 (576)
T KOG2549|consen 212 ITEACTGSDEPLRQEALQSLE---TD-SGLQ------QLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLL-DNPNI 280 (576)
T ss_pred HHHHHhcCCHHHHHHHHHhhc---cC-ccHH------HHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHh-cCCcc
Confidence 334444456666666655542 22 2221 135666666643 34566677777777775 44554
Q ss_pred hHHHHhcCChHHHHHHhCCC----------CHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCC--HHHHHH
Q 010291 122 KVHIVQRGAVRPLIEMLQSP----------DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN--GSLQHN 189 (513)
Q Consensus 122 ~~~~~~~~~i~~L~~~l~~~----------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~~~~~ 189 (513)
...-.-...+|.++.++-+. +-.+|..|+..+..++.+....-.-.....+..+.+.+.+.. .....-
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence 44333345778888777432 235899999999999987766544455566777777776552 334444
Q ss_pred HHHHHHhcc
Q 010291 190 AAFALYGLA 198 (513)
Q Consensus 190 a~~~L~~l~ 198 (513)
++..|..|.
T Consensus 361 ai~gL~~lg 369 (576)
T KOG2549|consen 361 AIAGLSELG 369 (576)
T ss_pred HHHHHHHhh
Confidence 444444443
No 408
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.49 E-value=4.4e+02 Score=25.73 Aligned_cols=111 Identities=15% Similarity=0.095 Sum_probs=69.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHH
Q 010291 47 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 126 (513)
Q Consensus 47 i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 126 (513)
+.-|+..+++.+..+|..|+.-|..+....+.... .--.-+++.+..++.+.+..+|.....++.++............
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 56778888899999999999988888765444322 11123566667777778888888888777776533222221111
Q ss_pred hcCChHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010291 127 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158 (513)
Q Consensus 127 ~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 158 (513)
-.=.++.+-..+..-.++++..+...|.-+..
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~ 170 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLE 170 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHH
Confidence 11123333444455677777777777776654
No 409
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=27.50 E-value=2.6e+02 Score=32.84 Aligned_cols=110 Identities=14% Similarity=0.125 Sum_probs=65.1
Q ss_pred CCHHHHHH----hhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCch
Q 010291 45 NALPTLIL----MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 120 (513)
Q Consensus 45 g~i~~Lv~----lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 120 (513)
...+.++. +|++.++.++..+......+-...+. ..+..++..|+..+.++...-...|+.+|..|+...+.
T Consensus 431 ~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~ 506 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPS 506 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHH
Confidence 34555554 45678899999988877777655433 22233677888887666554556889999999865444
Q ss_pred hhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcc
Q 010291 121 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 160 (513)
Q Consensus 121 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 160 (513)
..... +..+..+++.+..-+..=......+|+.++...
T Consensus 507 ~l~~f--a~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~ 544 (1426)
T PF14631_consen 507 ELQPF--ATFLKGILDYLDNLSLQQIRKLFDILCTLAFSD 544 (1426)
T ss_dssp HHHHT--HHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 32221 234555555665544444455577777777543
No 410
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=27.03 E-value=2.6e+02 Score=27.13 Aligned_cols=71 Identities=7% Similarity=0.078 Sum_probs=53.9
Q ss_pred CChHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc--chhhHhcCChHHHHHHhc-CCCHHHHHHHHHHHHhccc
Q 010291 129 GAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLAD 199 (513)
Q Consensus 129 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~ 199 (513)
.++..+.+.|...|+.|...|+..+..++.+... +..+........|..++. ...+.+.+.....+.+.+.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999999999876654 455556667777888888 5567777766666655554
No 411
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=26.94 E-value=4.5e+02 Score=26.68 Aligned_cols=38 Identities=26% Similarity=0.253 Sum_probs=29.3
Q ss_pred HHHHHHhCCChHHHHHhhcC-CChHHHHHHHHHHHHhhc
Q 010291 79 IKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAA 116 (513)
Q Consensus 79 ~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~ 116 (513)
..+.+.+.+.++.|+.+|.. .+++++..|+.+|..+..
T Consensus 54 ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~ 92 (475)
T PF04499_consen 54 ILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIR 92 (475)
T ss_pred HHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 34455568899999999974 457888889988888764
No 412
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=26.77 E-value=1.9e+02 Score=21.50 Aligned_cols=59 Identities=22% Similarity=0.146 Sum_probs=40.5
Q ss_pred CCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCC--CHHHHHHHHHHHHHHh
Q 010291 98 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLA 157 (513)
Q Consensus 98 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~ 157 (513)
+++..+|..|+..|..++....... .-.+..++..+.+.+.++ ......-|+..|..+.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~-~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSY-PTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3567899999999999985433221 123345677888888765 5566777787777773
No 413
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=26.39 E-value=3.5e+02 Score=22.60 Aligned_cols=76 Identities=17% Similarity=0.200 Sum_probs=46.5
Q ss_pred hHHHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHh-cC-CHHHHHH-hhcCCC--HHHHHHHHHHHHHhhcCChhHH
Q 010291 6 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CN-ALPTLIL-MLRSED--SAIHYEAVGVIGNLVHSSPNIK 80 (513)
Q Consensus 6 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g-~i~~Lv~-lL~~~~--~~v~~~a~~~L~~l~~~~~~~~ 80 (513)
+.+++.+.++++.+-..+++.+..+... .+..+.. .+ .+..++. ++.+++ ..-|..++.++..++.+..-..
T Consensus 76 ~~Ll~~~~~~~~~i~~~slri~~~l~~~---~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~ 152 (168)
T PF12783_consen 76 PALLKNLSSSDFPIFSRSLRIFLTLLSR---FRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLV 152 (168)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHH
Confidence 4455555566688888888888888752 3333322 12 2344443 666433 4677889999999998754444
Q ss_pred HHHH
Q 010291 81 KEVL 84 (513)
Q Consensus 81 ~~~~ 84 (513)
+...
T Consensus 153 ~lf~ 156 (168)
T PF12783_consen 153 DLFV 156 (168)
T ss_pred HHHH
Confidence 4433
No 414
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=24.08 E-value=6.3e+02 Score=26.29 Aligned_cols=135 Identities=8% Similarity=-0.011 Sum_probs=80.4
Q ss_pred cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHh--CCChHH
Q 010291 14 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQP 91 (513)
Q Consensus 14 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~ 91 (513)
+-++.+|..+...|+.....-|+ .+++..++.+.--.|.+.+..+|.....+|..++...+... .+.+ ...-..
T Consensus 286 Dv~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d-~ir~f~eRFk~r 361 (740)
T COG5537 286 DVDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTD-AIRRFVERFKDR 361 (740)
T ss_pred chhHHHHHHHHHHHHHHHhcchH---HHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHH
Confidence 34567777777777776653333 33343456666667778889999999999999998766542 1111 123345
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 010291 92 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 158 (513)
Q Consensus 92 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 158 (513)
+++++..+..-||..+...+..+.... ..+...+..+.+++-+..|+-++.....+.++|.
T Consensus 362 ILE~~r~D~d~VRi~sik~l~~lr~lg------~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 362 ILEFLRTDSDCVRICSIKSLCYLRILG------VLSSSEILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHHHHhhccchhhHHHHHHHHHHHHhc------ccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 556555444447777777776664221 1112234445555655555555555666666664
No 415
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=23.86 E-value=6.3e+02 Score=23.99 Aligned_cols=140 Identities=11% Similarity=0.150 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHH-hhcC--------CCHHHHHHHHHHHHHhhcCChhHHHHHHhCCC
Q 010291 18 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL-MLRS--------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 88 (513)
Q Consensus 18 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~-lL~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 88 (513)
.++.+.++.+.......+ .... +....++++++ .|.+ .++++......++.++-....+.-..+.+ .+
T Consensus 42 ~iKkeIL~Li~t~i~~~~-~~~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAE-DPEE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AV 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S--HHH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHhccC-CHHH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HH
Confidence 356666777776666333 3333 44557888887 4431 24555555555555554432232333332 24
Q ss_pred hHHHHHhhcC---CChHHHHHHHHHHHHhhcCCchhhHHHH---hcCChHHHHHHhCCCCHHHHHHHHHHHHHHhhcc
Q 010291 89 LQPVIGLLSS---CCSESQREAALLLGQFAATDSDCKVHIV---QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 160 (513)
Q Consensus 89 i~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~---~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 160 (513)
....+.++.. +.|+.+..--..|..+.......-..+- -..++..++..+++++.++.+.++.+|..+...-
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~ 196 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNV 196 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 4555566654 3477777666666666644332211110 0135678888899999999999999998887543
No 416
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=23.84 E-value=2.5e+02 Score=27.22 Aligned_cols=70 Identities=9% Similarity=0.097 Sum_probs=53.3
Q ss_pred ChhHHHHhhccCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhh
Q 010291 4 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLV 73 (513)
Q Consensus 4 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~l~ 73 (513)
++..+.+-|++.++.+...|+..+..++.+ ....+..+....+...|..++. +..+.|++....++-+.+
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWs 117 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWS 117 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 466778888899999999999988888764 3456677777788888888888 567777777666665555
No 417
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=23.78 E-value=7.2e+02 Score=25.91 Aligned_cols=135 Identities=12% Similarity=0.009 Sum_probs=83.3
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHH--hcCChHH
Q 010291 56 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV--QRGAVRP 133 (513)
Q Consensus 56 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~ 133 (513)
+-++.+|..+...|+--...-|.. +....++...-..|.+.+..++.....++..+++..|... .+. -..+...
T Consensus 286 Dv~d~IRv~c~~~L~dwi~lvP~y---f~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d-~ir~f~eRFk~r 361 (740)
T COG5537 286 DVDDVIRVLCSMSLRDWIGLVPDY---FRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTD-AIRRFVERFKDR 361 (740)
T ss_pred chhHHHHHHHHHHHHHHHhcchHH---HHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHH
Confidence 456777888877777666554443 3333467777777888899999999999999998877543 222 1345666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291 134 LIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 199 (513)
Q Consensus 134 L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 199 (513)
++.++..+..-||..+...+..+..- ...+...+..+..++-+..++-+......+.++|.
T Consensus 362 ILE~~r~D~d~VRi~sik~l~~lr~l-----g~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 362 ILEFLRTDSDCVRICSIKSLCYLRIL-----GVLSSSEILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHHHHhhccchhhHHHHHHHHHHHHh-----cccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 77777665334887777777776421 11222334445555555555544444445555553
No 418
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=23.48 E-value=6.4e+02 Score=23.94 Aligned_cols=137 Identities=12% Similarity=0.092 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHhCCChHHHHH-hhcC--------CChHHHHHHHHHHHHhhcCCchhhHHHHhcCC
Q 010291 60 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG-LLSS--------CCSESQREAALLLGQFAATDSDCKVHIVQRGA 130 (513)
Q Consensus 60 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~--------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 130 (513)
.+++..+..+.......++. +. +....++.++. +|.+ .++++..-....+.++-..-.+....+.+ .+
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~-~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDP-EE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AV 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-H-HH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHhccCCH-HH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HH
Confidence 45667777777776654433 22 33456777666 3432 35566666666666665433333333433 45
Q ss_pred hHHHHHHhCCC---CHHHHHHHHHHHHHHhhccccchhhHh----cCChHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010291 131 VRPLIEMLQSP---DVQLREMSAFALGRLAQDMHNQAGIAH----NGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 199 (513)
Q Consensus 131 i~~L~~~l~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~----~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 199 (513)
....+.++.++ .|+.+..-...|.++.......-.-.. ...++.++..+++.+.++...++.++..+..
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 56677777653 688998888888888764322111011 1345667777889999999999999888765
No 419
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=23.08 E-value=3.6e+02 Score=20.81 Aligned_cols=69 Identities=10% Similarity=0.043 Sum_probs=45.6
Q ss_pred ChHHHHHhhcCCChHHHHHHHHHHHHhhcCC-chhhHHHHhcCChHHHHHHhC------CCCHHHHHHHHHHHHHH
Q 010291 88 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQ------SPDVQLREMSAFALGRL 156 (513)
Q Consensus 88 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~------~~~~~~~~~a~~~L~~l 156 (513)
++..|..-|.+.++.+...|+.+|..+.... +.....+....++..++.... ..+..+++.+...+...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 4566777777888999999999999988544 344455555555555554311 23667888777766554
No 420
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=22.92 E-value=3.6e+02 Score=20.85 Aligned_cols=81 Identities=12% Similarity=0.165 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhhccCc-hhHHHHHhc-------CCHHHHHHhhc----------CCCHHHHHHHHHHHHHhhcC-Ch
Q 010291 17 TKVQRAAAGALRTLAFKND-ENKNQIVEC-------NALPTLILMLR----------SEDSAIHYEAVGVIGNLVHS-SP 77 (513)
Q Consensus 17 ~~~~~~a~~~L~~l~~~~~-~~~~~i~~~-------g~i~~Lv~lL~----------~~~~~v~~~a~~~L~~l~~~-~~ 77 (513)
.......++.|.-+|+|+. +.+..++.. +.|..++.+|. ..+.++...+..+|..++.+ ..
T Consensus 7 ~~~~~~ilr~LQLlCEghn~~lQnylR~Q~~~~~s~nlV~~~~~ll~~l~~~~~~~~~~~~~~~~q~~~tL~E~iQGPC~ 86 (109)
T PF08454_consen 7 MEIIQRILRFLQLLCEGHNLDLQNYLRQQPNNKNSYNLVSETVDLLDSLQEFGKDINSDNIELIIQCFDTLTEFIQGPCI 86 (109)
T ss_pred HHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3445667788888887643 444444432 23444444432 23456677778888888877 67
Q ss_pred hHHHHHHhCCChHHHHHhhc
Q 010291 78 NIKKEVLAAGALQPVIGLLS 97 (513)
Q Consensus 78 ~~~~~~~~~g~i~~L~~ll~ 97 (513)
+++..+.+..++..+..++.
T Consensus 87 eNQ~~l~~s~~~~~i~~lL~ 106 (109)
T PF08454_consen 87 ENQIALANSKFLDIINDLLS 106 (109)
T ss_pred HhHHHHHHccHHHHHHHHHh
Confidence 78888888888887777764
No 421
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=22.76 E-value=8.8e+02 Score=29.51 Aligned_cols=155 Identities=12% Similarity=0.084 Sum_probs=87.7
Q ss_pred HHHHHhcCCHHHHHHhhc----CCCHHHHHHHHHHHHHhhcCChhHHH---HHHhCCChHHHHHhhcC-CChHHHHHHHH
Q 010291 38 KNQIVECNALPTLILMLR----SEDSAIHYEAVGVIGNLVHSSPNIKK---EVLAAGALQPVIGLLSS-CCSESQREAAL 109 (513)
Q Consensus 38 ~~~i~~~g~i~~Lv~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~---~~~~~g~i~~L~~ll~~-~~~~~~~~a~~ 109 (513)
|..+....+...+.+.+. +++..++..|+..|..++...-+..+ .-.+...+.++..++.+ .+.++++..+.
T Consensus 1126 Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILe 1205 (1780)
T PLN03076 1126 RIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIR 1205 (1780)
T ss_pred chheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 444444454444444332 45678889999999888853222111 12233466777776654 56799999999
Q ss_pred HHHHhhcCCchhhHHHHhcCChHHHHHHh----CCCCHHHHHHHHHHHHHHhhccccchhhHhcC----ChHHHHHHhcC
Q 010291 110 LLGQFAATDSDCKVHIVQRGAVRPLIEML----QSPDVQLREMSAFALGRLAQDMHNQAGIAHNG----GLVPLLKLLDS 181 (513)
Q Consensus 110 ~L~~l~~~~~~~~~~~~~~~~i~~L~~~l----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~----~i~~L~~ll~~ 181 (513)
++.++..... .-+.+|+ +.+..++ .++++.+...|..++..+..+.-..-.....+ .+..+.+....
T Consensus 1206 Cv~qmI~s~~----~nIkSGW-ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q 1280 (1780)
T PLN03076 1206 CVSQMVLSRV----NNVKSGW-KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNS 1280 (1780)
T ss_pred HHHHHHHHHH----hhhhcCc-HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhC
Confidence 9999874322 2234443 3344444 35678888888888887765322100000012 23334444433
Q ss_pred C-CHHHHHHHHHHHHhc
Q 010291 182 K-NGSLQHNAAFALYGL 197 (513)
Q Consensus 182 ~-~~~~~~~a~~~L~~l 197 (513)
. +.++-..|+..|+++
T Consensus 1281 ~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1281 RFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred cCcccccHHHHHHHHHH
Confidence 3 356666777777755
No 422
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.41 E-value=1.9e+02 Score=29.09 Aligned_cols=65 Identities=18% Similarity=0.139 Sum_probs=48.3
Q ss_pred hhHHHHhhccCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHH
Q 010291 5 IPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVI 69 (513)
Q Consensus 5 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L 69 (513)
+..|.+.+++.++.++..|+..|--+..+. ......+.+.+++.-+|.+.+. .+..||..++..|
T Consensus 40 vralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI 107 (470)
T KOG1087|consen 40 VRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELI 107 (470)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHH
Confidence 344555566778899999999777777653 3445578888999999988884 4678888887776
No 423
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=22.41 E-value=2.6e+02 Score=21.24 Aligned_cols=55 Identities=18% Similarity=0.333 Sum_probs=38.7
Q ss_pred cEEEEecC--eeehhhHHHHhhcCHHHHHhccCC---CCCCCCCceecCCCCHHHHHHHHHHH
Q 010291 347 DVTFLVEG--RRFYAHRICLLASSDAFRAMFDGG---YREKDARDIEIPNIRWEVFELMMRFI 404 (513)
Q Consensus 347 Dv~~~~~~--~~~~~h~~il~~~s~~f~~~~~~~---~~e~~~~~i~l~~~~~~~~~~~l~~~ 404 (513)
-+.+.||+ +.|-++...|. .|.|+.++... |.-..+..|.+| .+...|+.++..+
T Consensus 40 ~~~VyVG~~~~Rfvvp~~~L~--hp~f~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 40 HFAVYVGEERRRFVVPVSYLN--HPLFQELLEQAEEEFGFDQDGPLTIP-CDVVLFEHLLWLL 99 (100)
T ss_pred eEEEEeCccceEEEechHHcC--chhHHHHHHHHhhhcCcCCCCcEEee-CCHHHHHHHHHHh
Confidence 45666665 67778777775 69999999532 222335678888 6888999888765
No 424
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=22.38 E-value=6.6e+02 Score=23.68 Aligned_cols=77 Identities=13% Similarity=0.217 Sum_probs=58.8
Q ss_pred CChhHHHHhhcc--CCHHHHHHHHHHHHHhhccCch--hHHHHHhcCCHHHHHHhhcCC---CHHHHHHHHHHHHHhhcC
Q 010291 3 GGIPPLVELLEF--TDTKVQRAAAGALRTLAFKNDE--NKNQIVECNALPTLILMLRSE---DSAIHYEAVGVIGNLVHS 75 (513)
Q Consensus 3 g~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~--~~~~i~~~g~i~~Lv~lL~~~---~~~v~~~a~~~L~~l~~~ 75 (513)
|.+..+++.+.. .+...+..-+.++....++.+. -+..+.+.|.++.++..+-++ +..+.+.+...||.+.+.
T Consensus 95 gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK~ 174 (303)
T PF12463_consen 95 GLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIKF 174 (303)
T ss_pred cHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHCC
Confidence 566777777754 3566788888899999887554 455677889999999876643 356889999999999988
Q ss_pred ChhH
Q 010291 76 SPNI 79 (513)
Q Consensus 76 ~~~~ 79 (513)
+...
T Consensus 175 n~~~ 178 (303)
T PF12463_consen 175 NRDA 178 (303)
T ss_pred CHHH
Confidence 7654
No 425
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=22.00 E-value=3.7e+02 Score=20.61 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=42.5
Q ss_pred ChhHHHHhhcc----CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcC
Q 010291 4 GIPPLVELLEF----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHS 75 (513)
Q Consensus 4 ~i~~Lv~lL~~----~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~~l~~~ 75 (513)
.+..+...+.+ .+...+.++++.|..+.+-... .+. .+.|.+..+|++ ..++++..|+.+...+...
T Consensus 12 il~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~---~i~--~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 12 ILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGS---HIS--SARPQIMACLQSALEIPELREEALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHH---HHH--HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Confidence 34445555544 4567889999999988862212 111 235666666663 4568899988888777653
No 426
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=21.10 E-value=3e+02 Score=20.43 Aligned_cols=57 Identities=19% Similarity=0.134 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHHHhhccccchhhHhcCChHHHHHHhcCCC--HHHHHHHHHHHHhc
Q 010291 141 PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN--GSLQHNAAFALYGL 197 (513)
Q Consensus 141 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~~~~~a~~~L~~l 197 (513)
++-.+|+.|+..|..++........-........+.+.+.+++ .....-|+..|..|
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3557999999999999966544333344456667777777554 44555666666665
No 427
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.80 E-value=1.6e+03 Score=27.45 Aligned_cols=128 Identities=16% Similarity=0.078 Sum_probs=65.9
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhC
Q 010291 8 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 86 (513)
Q Consensus 8 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 86 (513)
++..|..++|-.+..+..+++.++.-- .....+ .+..+..+.-|++ .++..|..-.-+++.+-++....-..-...
T Consensus 881 ~~~sl~~~~p~~rc~~~ea~arLaq~v-~~~~f~--a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~ 957 (2067)
T KOG1822|consen 881 IVNSLINPNPKLRCAAAEALARLAQVV-GSAPFV--ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLN 957 (2067)
T ss_pred HhhhhccCChHHHHHHHHHHHHHHHhc-cccchH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcc
Confidence 344455677788888888888887621 111111 1234555555554 455555554445555543322111100112
Q ss_pred CChHHHHHhhcCCC-hHHHHHHHHHHHHhhcCCchhhHHHHhcCChHHHHHHhC
Q 010291 87 GALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 139 (513)
Q Consensus 87 g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~ 139 (513)
.++..+..+-.++. +.|+..++.++.-+......-....+ ...+..+..++-
T Consensus 958 t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~v-e~tlsl~~~lLl 1010 (2067)
T KOG1822|consen 958 TSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLV-EPTLSLCLKLLL 1010 (2067)
T ss_pred cHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhH-HHHHHHHHHHcC
Confidence 34556666666654 59999999999888744433332222 233344444443
Done!